Query 005191
Match_columns 709
No_of_seqs 602 out of 3385
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 18:10:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 2E-43 7E-48 335.8 10.1 166 3-173 6-172 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 3E-43 1E-47 339.5 11.3 169 2-173 32-202 (204)
3 2a5y_B CED-4; apoptosis; HET: 100.0 1.4E-41 4.9E-46 388.2 23.1 298 185-495 131-472 (549)
4 3sfz_A APAF-1, apoptotic pepti 100.0 5.1E-37 1.7E-41 382.9 27.0 307 176-495 118-453 (1249)
5 1z6t_A APAF-1, apoptotic prote 100.0 4.1E-35 1.4E-39 338.3 27.9 301 176-491 118-449 (591)
6 1vt4_I APAF-1 related killer D 100.0 9E-35 3.1E-39 338.3 19.7 278 182-487 128-436 (1221)
7 3h16_A TIR protein; bacteria T 99.9 8.2E-28 2.8E-32 227.4 5.7 120 2-122 17-137 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.9 6.4E-24 2.2E-28 197.9 0.8 133 3-139 8-145 (146)
9 1fyx_A TOLL-like receptor 2; b 99.8 2.6E-21 8.8E-26 181.3 2.8 100 2-103 2-107 (149)
10 2js7_A Myeloid differentiation 99.8 5.2E-21 1.8E-25 181.1 4.5 99 3-103 14-117 (160)
11 2j67_A TOLL like receptor 10; 99.8 1.3E-20 4.3E-25 181.3 3.8 97 3-101 33-134 (178)
12 1t3g_A X-linked interleukin-1 99.8 8.3E-20 2.8E-24 172.7 7.0 100 4-103 1-114 (159)
13 2qen_A Walker-type ATPase; unk 99.8 1.8E-17 6.2E-22 177.2 21.8 291 176-488 6-349 (350)
14 2fna_A Conserved hypothetical 99.7 3.1E-17 1.1E-21 175.8 18.0 291 176-487 7-356 (357)
15 1w5s_A Origin recognition comp 99.7 9.3E-16 3.2E-20 168.0 19.8 284 179-473 19-371 (412)
16 2qby_B CDC6 homolog 3, cell di 99.6 5.9E-13 2E-17 144.3 26.8 277 181-473 19-339 (384)
17 2qby_A CDC6 homolog 1, cell di 99.5 4.7E-13 1.6E-17 144.7 22.2 283 179-473 17-348 (386)
18 1fnn_A CDC6P, cell division co 99.5 4.5E-12 1.5E-16 137.4 25.5 303 180-494 15-387 (389)
19 2v1u_A Cell division control p 99.5 2.9E-12 9.8E-17 138.7 23.1 282 179-473 16-351 (387)
20 3j0a_A TOLL-like receptor 5; m 99.5 3.8E-14 1.3E-18 169.8 7.0 100 3-104 668-775 (844)
21 1njg_A DNA polymerase III subu 99.3 6.9E-11 2.4E-15 118.4 16.3 199 178-389 19-231 (250)
22 2chg_A Replication factor C sm 99.2 7.8E-10 2.7E-14 109.2 17.4 189 178-388 13-206 (226)
23 1sxj_B Activator 1 37 kDa subu 99.0 1.2E-09 4.1E-14 115.0 13.7 186 178-386 17-210 (323)
24 1hqc_A RUVB; extended AAA-ATPa 99.0 4.1E-08 1.4E-12 103.5 21.2 266 178-486 8-311 (324)
25 1iqp_A RFCS; clamp loader, ext 98.9 1E-08 3.6E-13 107.9 14.9 190 178-389 21-215 (327)
26 2chq_A Replication factor C sm 98.7 1.9E-07 6.5E-12 97.8 17.6 182 178-387 13-205 (319)
27 1jr3_A DNA polymerase III subu 98.7 1.1E-07 3.9E-12 102.0 15.3 196 179-387 13-222 (373)
28 3te6_A Regulatory protein SIR3 98.6 3.2E-07 1.1E-11 96.0 13.0 164 183-354 21-211 (318)
29 3bos_A Putative DNA replicatio 98.6 1.1E-07 3.8E-12 95.1 8.9 176 180-388 26-219 (242)
30 3pfi_A Holliday junction ATP-d 98.6 1.7E-06 5.8E-11 91.7 18.1 254 179-476 26-316 (338)
31 3h4m_A Proteasome-activating n 98.5 1.3E-06 4.5E-11 90.1 16.3 183 177-385 12-230 (285)
32 1jbk_A CLPB protein; beta barr 98.5 2.6E-07 9E-12 88.5 10.3 50 180-231 20-69 (195)
33 1d2n_A N-ethylmaleimide-sensit 98.5 4.9E-06 1.7E-10 85.3 18.3 197 182-406 33-263 (272)
34 1sxj_D Activator 1 41 kDa subu 98.5 2.4E-06 8.3E-11 90.8 16.3 197 178-386 33-235 (353)
35 1sxj_A Activator 1 95 kDa subu 98.4 2.5E-06 8.4E-11 96.0 16.3 191 178-384 35-250 (516)
36 3d8b_A Fidgetin-like protein 1 98.4 5.2E-06 1.8E-10 88.8 18.0 203 156-388 63-297 (357)
37 2z4s_A Chromosomal replication 98.4 5.1E-07 1.7E-11 99.5 10.1 184 181-386 104-306 (440)
38 3uk6_A RUVB-like 2; hexameric 98.4 3.7E-06 1.3E-10 90.1 16.2 202 181-387 43-304 (368)
39 2qz4_A Paraplegin; AAA+, SPG7, 98.4 8.3E-06 2.9E-10 82.7 17.0 182 181-385 5-221 (262)
40 1sxj_E Activator 1 40 kDa subu 98.3 3E-06 1E-10 90.3 13.3 199 179-387 11-238 (354)
41 3eie_A Vacuolar protein sortin 98.3 5.3E-06 1.8E-10 87.4 14.7 184 178-386 14-228 (322)
42 3pvs_A Replication-associated 98.3 3.4E-06 1.2E-10 92.8 13.5 181 178-387 22-216 (447)
43 3syl_A Protein CBBX; photosynt 98.3 5.4E-06 1.9E-10 86.5 13.4 150 183-354 32-217 (309)
44 1l8q_A Chromosomal replication 98.3 5.4E-06 1.8E-10 87.3 12.9 179 180-382 9-204 (324)
45 3b9p_A CG5977-PA, isoform A; A 98.2 1.2E-05 4E-10 83.5 14.9 184 178-386 17-233 (297)
46 2zan_A Vacuolar protein sortin 98.2 3.2E-05 1.1E-09 85.2 18.5 186 178-386 130-345 (444)
47 1xwi_A SKD1 protein; VPS4B, AA 98.2 3.2E-05 1.1E-09 81.4 17.7 183 180-387 10-224 (322)
48 2p65_A Hypothetical protein PF 98.2 5.2E-06 1.8E-10 79.1 10.6 50 180-231 20-69 (187)
49 2qp9_X Vacuolar protein sortin 98.2 1.8E-05 6.2E-10 84.5 15.1 183 179-386 48-261 (355)
50 3vfd_A Spastin; ATPase, microt 98.2 2.4E-05 8.2E-10 84.6 15.9 185 178-387 111-327 (389)
51 3u61_B DNA polymerase accessor 98.2 8.6E-06 3E-10 85.7 12.0 179 178-384 22-214 (324)
52 1a5t_A Delta prime, HOLB; zinc 98.1 4.5E-05 1.5E-09 80.7 16.3 181 189-387 9-206 (334)
53 3cf0_A Transitional endoplasmi 98.1 4.5E-05 1.5E-09 79.4 16.0 176 180-381 13-223 (301)
54 3pxg_A Negative regulator of g 98.0 4.6E-05 1.6E-09 84.5 15.1 149 179-354 177-338 (468)
55 1qvr_A CLPB protein; coiled co 98.0 1.8E-05 6.1E-10 94.5 12.2 51 179-231 167-217 (854)
56 1sxj_C Activator 1 40 kDa subu 98.0 8.7E-05 3E-09 78.6 15.6 184 179-384 22-210 (340)
57 1in4_A RUVB, holliday junction 98.0 0.00026 8.9E-09 74.8 18.5 256 180-479 23-317 (334)
58 3hu3_A Transitional endoplasmi 97.9 7.7E-05 2.6E-09 82.9 13.3 180 181-385 203-414 (489)
59 4b4t_J 26S protease regulatory 97.9 0.00012 4.2E-09 78.4 14.2 173 181-379 147-354 (405)
60 3n70_A Transport activator; si 97.9 2.3E-05 7.9E-10 72.2 7.3 47 183-229 2-48 (145)
61 1ofh_A ATP-dependent HSL prote 97.8 7.4E-05 2.5E-09 77.6 11.6 48 182-229 15-74 (310)
62 1lv7_A FTSH; alpha/beta domain 97.8 7.7E-05 2.6E-09 75.5 10.9 180 179-384 9-223 (257)
63 2r62_A Cell division protease 97.7 4.4E-05 1.5E-09 77.8 7.7 154 179-354 8-196 (268)
64 3pxi_A Negative regulator of g 97.7 0.0002 6.7E-09 84.4 14.2 149 179-354 177-338 (758)
65 1r6b_X CLPA protein; AAA+, N-t 97.7 0.00014 4.7E-09 85.7 12.8 151 180-354 184-362 (758)
66 4b4t_L 26S protease subunit RP 97.7 0.00069 2.3E-08 73.7 16.9 173 181-379 180-387 (437)
67 2w58_A DNAI, primosome compone 97.7 0.00011 3.6E-09 71.5 9.3 61 180-240 23-89 (202)
68 4b4t_H 26S protease regulatory 97.7 0.0012 4.3E-08 71.7 18.1 172 182-379 209-415 (467)
69 4b4t_K 26S protease regulatory 97.7 0.00043 1.5E-08 75.2 14.4 173 181-379 171-379 (428)
70 3ec2_A DNA replication protein 97.7 7.3E-05 2.5E-09 71.3 7.5 26 205-230 38-63 (180)
71 4b4t_M 26S protease regulatory 97.6 0.00064 2.2E-08 73.9 15.5 173 180-378 179-386 (434)
72 2gno_A DNA polymerase III, gam 97.6 0.00021 7.1E-09 74.4 11.4 145 187-354 2-152 (305)
73 4fcw_A Chaperone protein CLPB; 97.6 0.00032 1.1E-08 72.9 12.6 49 183-231 18-73 (311)
74 1ojl_A Transcriptional regulat 97.6 0.00019 6.6E-09 74.8 10.0 48 182-229 2-49 (304)
75 2ce7_A Cell division protein F 97.5 0.0008 2.7E-08 74.2 14.7 174 181-379 15-221 (476)
76 2c9o_A RUVB-like 1; hexameric 97.5 0.0019 6.4E-08 71.2 17.3 50 181-230 36-88 (456)
77 2bjv_A PSP operon transcriptio 97.5 0.00038 1.3E-08 70.8 10.5 49 182-230 6-54 (265)
78 4b4t_I 26S protease regulatory 97.5 0.0018 6.3E-08 69.7 15.9 173 181-379 181-388 (437)
79 3co5_A Putative two-component 97.4 4.3E-05 1.5E-09 70.2 1.4 48 182-229 4-51 (143)
80 3cf2_A TER ATPase, transitiona 97.3 0.00068 2.3E-08 79.2 10.6 172 182-379 204-407 (806)
81 2kjq_A DNAA-related protein; s 97.2 0.00046 1.6E-08 63.8 6.7 28 204-231 35-62 (149)
82 3pxi_A Negative regulator of g 97.2 0.0009 3.1E-08 78.8 10.4 149 182-353 491-674 (758)
83 3t15_A Ribulose bisphosphate c 97.2 0.0012 4.1E-08 68.3 9.8 27 204-230 35-61 (293)
84 1eiw_A Hypothetical protein MT 97.1 0.00045 1.6E-08 60.1 5.1 73 3-98 2-74 (111)
85 1ixz_A ATP-dependent metallopr 97.1 0.0039 1.4E-07 62.6 12.9 51 180-230 14-74 (254)
86 1ypw_A Transitional endoplasmi 97.0 0.0021 7.2E-08 75.9 10.5 150 181-354 203-385 (806)
87 1iy2_A ATP-dependent metallopr 96.9 0.0025 8.4E-08 65.2 9.7 52 179-230 37-98 (278)
88 2dhr_A FTSH; AAA+ protein, hex 96.9 0.0034 1.2E-07 69.6 11.1 171 180-379 29-236 (499)
89 1um8_A ATP-dependent CLP prote 96.9 0.0066 2.3E-07 64.9 12.7 25 205-229 72-96 (376)
90 2x8a_A Nuclear valosin-contain 96.6 0.012 4.1E-07 60.0 11.4 124 208-354 47-191 (274)
91 3m6a_A ATP-dependent protease 96.5 0.013 4.4E-07 66.0 12.2 48 184-231 83-134 (543)
92 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0029 9.9E-08 74.4 6.9 48 182-229 458-512 (758)
93 2qgz_A Helicase loader, putati 96.4 0.0095 3.3E-07 61.9 9.4 51 190-240 136-188 (308)
94 2cvh_A DNA repair and recombin 96.0 0.015 5.2E-07 56.5 8.5 44 194-240 9-52 (220)
95 3cf2_A TER ATPase, transitiona 96.0 0.0091 3.1E-07 69.7 7.7 150 182-354 477-661 (806)
96 1g5t_A COB(I)alamin adenosyltr 95.8 0.019 6.6E-07 55.1 7.9 117 206-324 29-163 (196)
97 1jr3_D DNA polymerase III, del 95.7 0.33 1.1E-05 50.8 17.9 165 193-385 8-184 (343)
98 1qvr_A CLPB protein; coiled co 95.6 0.011 3.7E-07 70.4 6.5 50 182-231 558-614 (854)
99 2vhj_A Ntpase P4, P4; non- hyd 95.6 0.014 4.6E-07 60.6 6.0 25 204-228 122-146 (331)
100 3hr8_A Protein RECA; alpha and 95.5 0.032 1.1E-06 59.0 8.7 49 192-240 47-96 (356)
101 2r44_A Uncharacterized protein 95.4 0.0063 2.1E-07 63.8 3.0 47 181-231 26-72 (331)
102 1qhx_A CPT, protein (chloramph 95.4 0.0076 2.6E-07 56.7 3.2 25 206-230 4-28 (178)
103 1rz3_A Hypothetical protein rb 95.3 0.021 7.3E-07 55.1 6.3 45 187-231 3-48 (201)
104 3jvv_A Twitching mobility prot 95.3 0.0047 1.6E-07 65.5 1.7 111 205-327 123-234 (356)
105 2eyu_A Twitching motility prot 95.3 0.019 6.7E-07 58.0 6.1 110 204-326 24-135 (261)
106 3hws_A ATP-dependent CLP prote 95.2 0.012 4.1E-07 62.5 4.5 46 184-229 17-75 (363)
107 3c8u_A Fructokinase; YP_612366 95.2 0.014 4.9E-07 56.6 4.7 38 193-230 10-47 (208)
108 2b8t_A Thymidine kinase; deoxy 95.2 0.0097 3.3E-07 58.7 3.2 110 204-324 11-126 (223)
109 3kb2_A SPBC2 prophage-derived 95.0 0.012 4E-07 54.9 3.3 25 206-230 2-26 (173)
110 1v5w_A DMC1, meiotic recombina 95.0 0.084 2.9E-06 55.6 10.0 37 193-229 110-146 (343)
111 1g8p_A Magnesium-chelatase 38 94.9 0.014 4.9E-07 61.3 3.8 51 178-230 20-70 (350)
112 3dm5_A SRP54, signal recogniti 94.7 0.3 1E-05 52.9 13.8 29 204-232 99-127 (443)
113 3kl4_A SRP54, signal recogniti 94.7 0.18 6.3E-06 54.5 12.1 29 204-232 96-124 (433)
114 3e70_C DPA, signal recognition 94.7 0.09 3.1E-06 54.9 9.4 30 203-232 127-156 (328)
115 3trf_A Shikimate kinase, SK; a 94.7 0.016 5.5E-07 54.8 3.3 25 205-229 5-29 (185)
116 3vaa_A Shikimate kinase, SK; s 94.7 0.017 6E-07 55.6 3.5 26 204-229 24-49 (199)
117 3nbx_X ATPase RAVA; AAA+ ATPas 94.7 0.022 7.7E-07 63.1 4.8 45 182-230 22-66 (500)
118 1zu4_A FTSY; GTPase, signal re 94.6 0.082 2.8E-06 55.1 8.8 29 204-232 104-132 (320)
119 1ex7_A Guanylate kinase; subst 94.6 0.012 4.3E-07 56.2 2.3 28 206-233 2-29 (186)
120 1nks_A Adenylate kinase; therm 94.6 0.032 1.1E-06 52.8 5.1 26 206-231 2-27 (194)
121 3lw7_A Adenylate kinase relate 94.5 0.018 6.1E-07 53.5 3.2 20 206-225 2-21 (179)
122 1ly1_A Polynucleotide kinase; 94.5 0.019 6.6E-07 53.8 3.4 22 206-227 3-24 (181)
123 2z43_A DNA repair and recombin 94.5 0.07 2.4E-06 55.7 8.0 38 193-230 95-132 (324)
124 3uie_A Adenylyl-sulfate kinase 94.5 0.036 1.2E-06 53.3 5.4 27 204-230 24-50 (200)
125 1odf_A YGR205W, hypothetical 3 94.5 0.032 1.1E-06 57.3 5.1 29 203-231 29-57 (290)
126 2cbz_A Multidrug resistance-as 94.4 0.078 2.7E-06 52.7 7.8 26 204-229 30-55 (237)
127 2rhm_A Putative kinase; P-loop 94.4 0.024 8.2E-07 53.9 3.9 26 204-229 4-29 (193)
128 3tlx_A Adenylate kinase 2; str 94.4 0.027 9.2E-07 56.3 4.4 27 203-229 27-53 (243)
129 3bh0_A DNAB-like replicative h 94.4 0.072 2.5E-06 55.3 7.7 66 189-262 53-118 (315)
130 1j8m_F SRP54, signal recogniti 94.3 0.14 4.8E-06 52.7 9.6 35 205-239 98-132 (297)
131 1zp6_A Hypothetical protein AT 94.3 0.024 8.4E-07 53.8 3.6 25 204-228 8-32 (191)
132 2ewv_A Twitching motility prot 94.2 0.016 5.4E-07 61.9 2.2 111 204-325 135-245 (372)
133 3hyn_A Putative signal transdu 94.2 0.21 7.2E-06 46.6 9.4 105 5-114 5-133 (189)
134 2q6t_A DNAB replication FORK h 94.2 0.28 9.7E-06 53.4 12.3 68 188-263 184-252 (444)
135 1kht_A Adenylate kinase; phosp 94.2 0.025 8.5E-07 53.6 3.3 26 206-231 4-29 (192)
136 1kag_A SKI, shikimate kinase I 94.2 0.021 7.1E-07 53.4 2.7 25 206-230 5-29 (173)
137 2xxa_A Signal recognition part 94.1 0.2 6.9E-06 54.4 10.8 29 204-232 99-127 (433)
138 2dr3_A UPF0273 protein PH0284; 94.1 0.039 1.3E-06 54.5 4.7 37 204-240 22-58 (247)
139 1kgd_A CASK, peripheral plasma 94.1 0.028 9.5E-07 53.2 3.4 26 205-230 5-30 (180)
140 1zuh_A Shikimate kinase; alpha 94.1 0.027 9.3E-07 52.4 3.3 26 205-230 7-32 (168)
141 2yvu_A Probable adenylyl-sulfa 94.1 0.051 1.8E-06 51.4 5.4 28 204-231 12-39 (186)
142 3iij_A Coilin-interacting nucl 94.1 0.022 7.7E-07 53.6 2.7 25 205-229 11-35 (180)
143 3t61_A Gluconokinase; PSI-biol 94.1 0.021 7.3E-07 54.9 2.6 25 205-229 18-42 (202)
144 3ice_A Transcription terminati 94.0 0.071 2.4E-06 56.5 6.7 40 204-243 173-213 (422)
145 1knq_A Gluconate kinase; ALFA/ 93.9 0.04 1.4E-06 51.6 4.2 25 205-229 8-32 (175)
146 2vli_A Antibiotic resistance p 93.9 0.025 8.7E-07 53.2 2.8 26 205-230 5-30 (183)
147 1tev_A UMP-CMP kinase; ploop, 93.9 0.034 1.2E-06 52.8 3.6 25 205-229 3-27 (196)
148 2c95_A Adenylate kinase 1; tra 93.9 0.033 1.1E-06 53.0 3.6 26 204-229 8-33 (196)
149 1xjc_A MOBB protein homolog; s 93.9 0.053 1.8E-06 50.9 4.8 34 204-237 3-37 (169)
150 1tue_A Replication protein E1; 93.9 0.041 1.4E-06 53.2 4.1 41 189-230 43-83 (212)
151 1ukz_A Uridylate kinase; trans 93.8 0.037 1.3E-06 53.2 3.9 26 204-229 14-39 (203)
152 1sky_E F1-ATPase, F1-ATP synth 93.8 0.087 3E-06 57.4 7.1 32 206-237 152-183 (473)
153 2jaq_A Deoxyguanosine kinase; 93.8 0.03 1E-06 53.6 3.2 24 207-230 2-25 (205)
154 1vma_A Cell division protein F 93.8 0.15 5.1E-06 52.7 8.7 29 204-232 103-131 (306)
155 4eun_A Thermoresistant glucoki 93.8 0.033 1.1E-06 53.6 3.5 26 204-229 28-53 (200)
156 3a00_A Guanylate kinase, GMP k 93.8 0.032 1.1E-06 53.1 3.3 28 206-233 2-29 (186)
157 2ze6_A Isopentenyl transferase 93.8 0.033 1.1E-06 55.9 3.6 24 206-229 2-25 (253)
158 2w0m_A SSO2452; RECA, SSPF, un 93.8 0.053 1.8E-06 53.0 5.0 37 204-240 22-58 (235)
159 1nn5_A Similar to deoxythymidy 93.8 0.057 1.9E-06 52.2 5.1 28 205-232 9-36 (215)
160 2qor_A Guanylate kinase; phosp 93.7 0.028 9.5E-07 54.3 2.8 27 204-230 11-37 (204)
161 3tau_A Guanylate kinase, GMP k 93.7 0.034 1.2E-06 53.9 3.5 27 204-230 7-33 (208)
162 1via_A Shikimate kinase; struc 93.7 0.032 1.1E-06 52.3 3.1 24 207-230 6-29 (175)
163 1uj2_A Uridine-cytidine kinase 93.7 0.037 1.3E-06 55.4 3.8 28 203-230 20-47 (252)
164 3cm0_A Adenylate kinase; ATP-b 93.7 0.04 1.4E-06 52.0 3.8 25 205-229 4-28 (186)
165 1gvn_B Zeta; postsegregational 93.7 0.054 1.9E-06 55.5 5.0 26 204-229 32-57 (287)
166 2plr_A DTMP kinase, probable t 93.7 0.04 1.4E-06 53.1 3.8 28 205-232 4-31 (213)
167 2bwj_A Adenylate kinase 5; pho 93.7 0.035 1.2E-06 53.0 3.3 25 205-229 12-36 (199)
168 1y63_A LMAJ004144AAA protein; 93.6 0.038 1.3E-06 52.4 3.5 25 204-228 9-33 (184)
169 2ga8_A Hypothetical 39.9 kDa p 93.6 0.047 1.6E-06 57.4 4.4 30 204-233 23-52 (359)
170 2r6a_A DNAB helicase, replicat 93.6 0.37 1.3E-05 52.7 11.8 49 191-240 190-239 (454)
171 2iyv_A Shikimate kinase, SK; t 93.6 0.029 9.8E-07 53.0 2.5 24 206-229 3-26 (184)
172 1qf9_A UMP/CMP kinase, protein 93.6 0.05 1.7E-06 51.4 4.2 25 205-229 6-30 (194)
173 2pjz_A Hypothetical protein ST 93.5 0.19 6.3E-06 50.8 8.6 25 205-229 30-54 (263)
174 1e6c_A Shikimate kinase; phosp 93.5 0.033 1.1E-06 51.9 2.7 24 206-229 3-26 (173)
175 3tr0_A Guanylate kinase, GMP k 93.5 0.04 1.4E-06 52.9 3.5 25 205-229 7-31 (205)
176 1aky_A Adenylate kinase; ATP:A 93.5 0.041 1.4E-06 53.8 3.5 25 205-229 4-28 (220)
177 1uf9_A TT1252 protein; P-loop, 93.5 0.045 1.5E-06 52.4 3.7 26 203-228 6-31 (203)
178 2cdn_A Adenylate kinase; phosp 93.4 0.047 1.6E-06 52.5 3.7 25 205-229 20-44 (201)
179 2zts_A Putative uncharacterize 93.4 0.073 2.5E-06 52.6 5.3 38 203-240 28-66 (251)
180 2wwf_A Thymidilate kinase, put 93.4 0.046 1.6E-06 52.8 3.7 28 205-232 10-37 (212)
181 2r2a_A Uncharacterized protein 93.3 0.24 8.2E-06 47.7 8.6 23 206-228 6-28 (199)
182 2j41_A Guanylate kinase; GMP, 93.3 0.044 1.5E-06 52.6 3.5 25 205-229 6-30 (207)
183 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.047 1.6E-06 55.0 3.7 26 205-230 4-29 (260)
184 2pbr_A DTMP kinase, thymidylat 93.3 0.045 1.5E-06 51.9 3.4 25 207-231 2-26 (195)
185 3upu_A ATP-dependent DNA helic 93.3 0.3 1E-05 53.5 10.5 29 206-234 46-74 (459)
186 2pt5_A Shikimate kinase, SK; a 93.3 0.047 1.6E-06 50.6 3.4 23 207-229 2-24 (168)
187 1cke_A CK, MSSA, protein (cyti 93.3 0.044 1.5E-06 53.6 3.4 24 206-229 6-29 (227)
188 3tqc_A Pantothenate kinase; bi 93.3 0.073 2.5E-06 55.4 5.1 47 184-230 69-117 (321)
189 3asz_A Uridine kinase; cytidin 93.3 0.048 1.6E-06 52.8 3.6 27 204-230 5-31 (211)
190 3ney_A 55 kDa erythrocyte memb 93.2 0.047 1.6E-06 52.6 3.4 27 204-230 18-44 (197)
191 2bdt_A BH3686; alpha-beta prot 93.2 0.047 1.6E-06 51.8 3.4 22 206-227 3-24 (189)
192 3p32_A Probable GTPase RV1496/ 93.2 0.11 3.9E-06 54.8 6.7 42 191-232 65-106 (355)
193 2px0_A Flagellar biosynthesis 93.2 0.18 6.3E-06 51.8 8.1 28 204-231 104-131 (296)
194 1n0w_A DNA repair protein RAD5 93.2 0.072 2.5E-06 52.5 4.9 37 193-229 12-48 (243)
195 4a1f_A DNAB helicase, replicat 93.2 0.22 7.7E-06 52.1 8.8 65 191-263 33-97 (338)
196 3bgw_A DNAB-like replicative h 93.1 0.24 8E-06 54.1 9.1 52 188-240 181-232 (444)
197 2qt1_A Nicotinamide riboside k 93.1 0.05 1.7E-06 52.5 3.4 26 204-229 20-45 (207)
198 4a74_A DNA repair and recombin 93.0 0.054 1.9E-06 52.9 3.5 26 204-229 24-49 (231)
199 2pez_A Bifunctional 3'-phospho 93.0 0.062 2.1E-06 50.5 3.8 28 204-231 4-31 (179)
200 3umf_A Adenylate kinase; rossm 93.0 0.061 2.1E-06 52.7 3.8 27 203-229 27-53 (217)
201 2z0h_A DTMP kinase, thymidylat 93.0 0.054 1.8E-06 51.5 3.4 25 207-231 2-26 (197)
202 2zr9_A Protein RECA, recombina 93.0 0.079 2.7E-06 55.9 4.9 49 192-240 47-96 (349)
203 2pt7_A CAG-ALFA; ATPase, prote 92.9 0.14 4.6E-06 53.6 6.7 106 205-325 171-276 (330)
204 1u94_A RECA protein, recombina 92.9 0.08 2.7E-06 56.0 5.0 49 192-240 49-98 (356)
205 2if2_A Dephospho-COA kinase; a 92.9 0.051 1.7E-06 52.2 3.2 21 207-227 3-23 (204)
206 3fb4_A Adenylate kinase; psych 92.9 0.054 1.9E-06 52.6 3.4 23 207-229 2-24 (216)
207 1zd8_A GTP:AMP phosphotransfer 92.8 0.053 1.8E-06 53.2 3.2 25 205-229 7-31 (227)
208 3fwy_A Light-independent proto 92.8 0.096 3.3E-06 54.4 5.3 36 204-239 47-82 (314)
209 2ehv_A Hypothetical protein PH 92.8 0.072 2.5E-06 52.7 4.2 37 204-240 29-66 (251)
210 2wsm_A Hydrogenase expression/ 92.8 0.1 3.5E-06 50.6 5.1 42 189-232 16-57 (221)
211 1zak_A Adenylate kinase; ATP:A 92.7 0.05 1.7E-06 53.2 2.9 27 204-230 4-30 (222)
212 1gtv_A TMK, thymidylate kinase 92.7 0.039 1.3E-06 53.4 2.0 25 207-231 2-26 (214)
213 2bbw_A Adenylate kinase 4, AK4 92.7 0.058 2E-06 53.7 3.4 25 205-229 27-51 (246)
214 3dl0_A Adenylate kinase; phosp 92.7 0.058 2E-06 52.4 3.3 23 207-229 2-24 (216)
215 2v54_A DTMP kinase, thymidylat 92.7 0.061 2.1E-06 51.5 3.3 25 205-229 4-28 (204)
216 1jjv_A Dephospho-COA kinase; P 92.6 0.059 2E-06 51.9 3.1 22 206-227 3-24 (206)
217 1lvg_A Guanylate kinase, GMP k 92.5 0.051 1.7E-06 52.3 2.5 25 205-229 4-28 (198)
218 2grj_A Dephospho-COA kinase; T 92.5 0.067 2.3E-06 51.3 3.3 24 205-228 12-35 (192)
219 1ye8_A Protein THEP1, hypothet 92.5 0.071 2.4E-06 50.5 3.4 24 207-230 2-25 (178)
220 2hf9_A Probable hydrogenase ni 92.5 0.12 4.2E-06 50.3 5.3 29 204-232 37-65 (226)
221 2p5t_B PEZT; postsegregational 92.4 0.063 2.2E-06 53.8 3.2 27 204-230 31-57 (253)
222 4gp7_A Metallophosphoesterase; 92.4 0.061 2.1E-06 50.4 2.9 23 204-226 8-30 (171)
223 3be4_A Adenylate kinase; malar 92.4 0.06 2.1E-06 52.5 2.9 24 206-229 6-29 (217)
224 1m7g_A Adenylylsulfate kinase; 92.3 0.083 2.8E-06 51.2 3.8 27 204-230 24-50 (211)
225 3io5_A Recombination and repai 92.3 0.14 4.8E-06 52.9 5.6 34 207-240 30-65 (333)
226 2ck3_D ATP synthase subunit be 92.3 0.47 1.6E-05 51.6 9.9 55 204-262 152-207 (482)
227 1g41_A Heat shock protein HSLU 92.3 0.085 2.9E-06 57.3 4.1 49 183-231 16-76 (444)
228 4e22_A Cytidylate kinase; P-lo 92.2 0.078 2.7E-06 53.1 3.6 26 204-229 26-51 (252)
229 1rj9_A FTSY, signal recognitio 92.2 0.12 4.1E-06 53.4 5.0 36 204-240 101-136 (304)
230 3k1j_A LON protease, ATP-depen 92.0 0.073 2.5E-06 60.6 3.5 48 180-231 39-86 (604)
231 2jeo_A Uridine-cytidine kinase 92.0 0.088 3E-06 52.4 3.7 26 204-229 24-49 (245)
232 1q57_A DNA primase/helicase; d 92.0 0.45 1.5E-05 52.7 9.9 54 203-263 240-294 (503)
233 3ake_A Cytidylate kinase; CMP 92.0 0.084 2.9E-06 50.7 3.4 23 207-229 4-26 (208)
234 3l0o_A Transcription terminati 92.0 0.3 1E-05 51.8 7.7 40 204-243 174-214 (427)
235 1a7j_A Phosphoribulokinase; tr 92.0 0.062 2.1E-06 55.2 2.6 27 204-230 4-30 (290)
236 1u0j_A DNA replication protein 91.9 0.13 4.3E-06 51.9 4.7 38 191-228 90-127 (267)
237 1znw_A Guanylate kinase, GMP k 91.9 0.082 2.8E-06 51.1 3.1 26 204-229 19-44 (207)
238 3e1s_A Exodeoxyribonuclease V, 91.8 0.46 1.6E-05 53.6 9.6 28 205-232 204-231 (574)
239 3aez_A Pantothenate kinase; tr 91.8 0.096 3.3E-06 54.3 3.7 28 203-230 88-115 (312)
240 2f6r_A COA synthase, bifunctio 91.8 0.096 3.3E-06 53.4 3.7 24 204-227 74-97 (281)
241 1vht_A Dephospho-COA kinase; s 91.8 0.1 3.5E-06 50.7 3.7 23 205-227 4-26 (218)
242 1s96_A Guanylate kinase, GMP k 91.8 0.09 3.1E-06 51.6 3.3 27 204-230 15-41 (219)
243 3d3q_A TRNA delta(2)-isopenten 91.7 0.094 3.2E-06 54.9 3.6 25 206-230 8-32 (340)
244 1e4v_A Adenylate kinase; trans 91.7 0.094 3.2E-06 50.9 3.4 23 207-229 2-24 (214)
245 1z6g_A Guanylate kinase; struc 91.7 0.076 2.6E-06 51.9 2.7 26 204-229 22-47 (218)
246 2xb4_A Adenylate kinase; ATP-b 91.7 0.095 3.3E-06 51.3 3.4 23 207-229 2-24 (223)
247 3nwj_A ATSK2; P loop, shikimat 91.7 0.075 2.6E-06 53.3 2.7 26 205-230 48-73 (250)
248 1xp8_A RECA protein, recombina 91.6 0.14 4.9E-06 54.2 4.9 49 192-240 60-109 (366)
249 1ak2_A Adenylate kinase isoenz 91.5 0.1 3.6E-06 51.4 3.6 26 205-230 16-41 (233)
250 1cr0_A DNA primase/helicase; R 91.5 0.21 7.3E-06 51.0 6.0 37 204-240 34-71 (296)
251 1np6_A Molybdopterin-guanine d 91.5 0.17 6E-06 47.6 4.8 27 205-231 6-32 (174)
252 3crm_A TRNA delta(2)-isopenten 91.4 0.1 3.6E-06 54.1 3.5 24 206-229 6-29 (323)
253 3r20_A Cytidylate kinase; stru 91.4 0.11 3.6E-06 51.6 3.3 25 205-229 9-33 (233)
254 3exa_A TRNA delta(2)-isopenten 91.3 0.11 3.8E-06 53.6 3.5 25 205-229 3-27 (322)
255 3foz_A TRNA delta(2)-isopenten 91.3 0.13 4.4E-06 53.0 4.0 26 204-229 9-34 (316)
256 3a8t_A Adenylate isopentenyltr 91.3 0.086 2.9E-06 55.0 2.7 25 205-229 40-64 (339)
257 3b9q_A Chloroplast SRP recepto 91.2 0.18 6.1E-06 52.0 5.1 28 204-231 99-126 (302)
258 2qmh_A HPR kinase/phosphorylas 91.2 0.1 3.6E-06 50.1 3.0 25 205-229 34-58 (205)
259 1htw_A HI0065; nucleotide-bind 91.2 0.13 4.5E-06 47.5 3.6 26 204-229 32-57 (158)
260 3sr0_A Adenylate kinase; phosp 91.1 0.12 4.2E-06 50.1 3.4 88 207-305 2-94 (206)
261 1yrb_A ATP(GTP)binding protein 91.0 0.21 7.2E-06 49.8 5.3 27 204-230 13-39 (262)
262 1fx0_B ATP synthase beta chain 91.0 0.26 8.8E-06 53.9 6.2 54 204-261 164-218 (498)
263 2r8r_A Sensor protein; KDPD, P 91.0 0.25 8.6E-06 48.4 5.6 27 206-232 7-33 (228)
264 3cmu_A Protein RECA, recombina 90.8 0.22 7.7E-06 63.3 6.3 48 193-240 1414-1462(2050)
265 3end_A Light-independent proto 90.8 0.22 7.4E-06 51.3 5.3 36 204-239 40-75 (307)
266 3lnc_A Guanylate kinase, GMP k 90.8 0.086 2.9E-06 51.9 2.1 25 205-229 27-52 (231)
267 1ltq_A Polynucleotide kinase; 90.7 0.13 4.4E-06 52.7 3.4 23 206-228 3-25 (301)
268 2f1r_A Molybdopterin-guanine d 90.7 0.095 3.2E-06 49.2 2.2 26 206-231 3-28 (171)
269 1sq5_A Pantothenate kinase; P- 90.7 0.15 5.1E-06 52.7 3.9 28 203-230 78-105 (308)
270 2orw_A Thymidine kinase; TMTK, 90.6 0.22 7.5E-06 47.3 4.7 26 206-231 4-29 (184)
271 1svm_A Large T antigen; AAA+ f 90.5 0.18 6.2E-06 53.7 4.4 29 201-229 165-193 (377)
272 1g8f_A Sulfate adenylyltransfe 90.5 0.19 6.4E-06 55.7 4.6 46 186-231 376-421 (511)
273 3zvl_A Bifunctional polynucleo 90.4 0.12 4.2E-06 55.8 3.0 26 204-229 257-282 (416)
274 1cp2_A CP2, nitrogenase iron p 90.4 0.25 8.4E-06 49.6 5.1 34 206-239 2-35 (269)
275 4eaq_A DTMP kinase, thymidylat 90.3 0.18 6.3E-06 49.6 4.0 28 204-231 25-52 (229)
276 2og2_A Putative signal recogni 90.3 0.24 8.3E-06 52.3 5.1 28 204-231 156-183 (359)
277 1nlf_A Regulatory protein REPA 90.3 0.22 7.7E-06 50.4 4.7 28 204-231 29-56 (279)
278 1q3t_A Cytidylate kinase; nucl 90.2 0.17 5.8E-06 49.9 3.7 26 204-229 15-40 (236)
279 2i3b_A HCR-ntpase, human cance 90.2 0.14 4.7E-06 49.0 2.9 24 207-230 3-26 (189)
280 2afh_E Nitrogenase iron protei 90.2 0.27 9.2E-06 50.1 5.2 28 205-232 2-29 (289)
281 2ocp_A DGK, deoxyguanosine kin 90.0 0.18 6E-06 50.0 3.6 26 205-230 2-27 (241)
282 1pzn_A RAD51, DNA repair and r 90.0 0.16 5.6E-06 53.5 3.5 35 195-229 121-155 (349)
283 2p67_A LAO/AO transport system 90.0 0.4 1.4E-05 50.2 6.6 30 203-232 54-83 (341)
284 3cmw_A Protein RECA, recombina 89.8 0.5 1.7E-05 59.4 8.1 51 190-240 716-767 (1706)
285 2j37_W Signal recognition part 89.8 0.36 1.2E-05 53.3 6.3 29 204-232 100-128 (504)
286 2v3c_C SRP54, signal recogniti 89.8 0.18 6E-06 54.8 3.7 29 204-232 98-126 (432)
287 1ls1_A Signal recognition part 89.8 0.3 1E-05 50.1 5.2 29 204-232 97-125 (295)
288 2yhs_A FTSY, cell division pro 89.7 0.29 9.8E-06 53.8 5.2 36 204-240 292-327 (503)
289 3b85_A Phosphate starvation-in 89.5 0.17 5.8E-06 49.1 3.0 24 205-228 22-45 (208)
290 2i1q_A DNA repair and recombin 89.5 0.29 1E-05 50.7 5.0 37 193-229 86-122 (322)
291 3eph_A TRNA isopentenyltransfe 89.5 0.2 6.8E-06 53.5 3.6 25 206-230 3-27 (409)
292 3tif_A Uncharacterized ABC tra 89.4 0.16 5.5E-06 50.3 2.8 24 204-227 30-53 (235)
293 4edh_A DTMP kinase, thymidylat 89.4 0.59 2E-05 45.4 6.8 28 205-232 6-33 (213)
294 1puj_A YLQF, conserved hypothe 89.4 2.5 8.5E-05 42.9 11.7 24 204-227 119-142 (282)
295 2onk_A Molybdate/tungstate ABC 89.3 0.18 6.3E-06 50.1 3.1 25 203-228 23-47 (240)
296 1oix_A RAS-related protein RAB 89.1 0.2 7E-06 47.4 3.2 24 205-228 29-52 (191)
297 2qm8_A GTPase/ATPase; G protei 89.1 0.53 1.8E-05 49.2 6.6 29 203-231 53-81 (337)
298 2dyk_A GTP-binding protein; GT 89.1 0.23 8E-06 44.9 3.4 23 206-228 2-24 (161)
299 4hlc_A DTMP kinase, thymidylat 89.1 0.33 1.1E-05 47.0 4.6 29 206-234 3-31 (205)
300 2pcj_A ABC transporter, lipopr 89.0 0.17 5.8E-06 49.7 2.5 24 204-227 29-52 (224)
301 2axn_A 6-phosphofructo-2-kinas 88.9 0.36 1.2E-05 53.7 5.4 30 204-233 34-63 (520)
302 3lda_A DNA repair protein RAD5 88.9 0.2 6.7E-06 53.8 3.2 37 192-228 165-201 (400)
303 2f9l_A RAB11B, member RAS onco 88.7 0.21 7.3E-06 47.5 3.0 24 205-228 5-28 (199)
304 2wji_A Ferrous iron transport 88.7 0.24 8.3E-06 45.5 3.3 22 206-227 4-25 (165)
305 3tqf_A HPR(Ser) kinase; transf 88.6 0.26 8.9E-06 46.1 3.4 24 205-228 16-39 (181)
306 2j9r_A Thymidine kinase; TK1, 88.5 0.73 2.5E-05 44.7 6.6 110 204-324 27-138 (214)
307 3cr8_A Sulfate adenylyltranfer 88.5 0.29 9.8E-06 54.8 4.3 28 204-231 368-395 (552)
308 1b0u_A Histidine permease; ABC 88.5 0.2 6.9E-06 50.5 2.8 25 204-228 31-55 (262)
309 2v9p_A Replication protein E1; 88.5 0.32 1.1E-05 50.1 4.2 27 203-229 124-150 (305)
310 2zej_A Dardarin, leucine-rich 88.4 0.2 7E-06 46.9 2.6 21 207-227 4-24 (184)
311 1mv5_A LMRA, multidrug resista 88.4 0.23 7.8E-06 49.4 3.0 24 204-227 27-50 (243)
312 2ce2_X GTPase HRAS; signaling 88.4 0.24 8.1E-06 44.8 2.9 22 207-228 5-26 (166)
313 1ypw_A Transitional endoplasmi 88.3 0.24 8.3E-06 58.2 3.7 51 181-231 476-537 (806)
314 3zq6_A Putative arsenical pump 88.3 0.45 1.6E-05 49.4 5.4 36 205-240 14-49 (324)
315 2d2e_A SUFC protein; ABC-ATPas 88.2 0.24 8.1E-06 49.5 3.0 25 204-228 28-52 (250)
316 2zu0_C Probable ATP-dependent 88.2 0.25 8.7E-06 49.9 3.3 25 204-228 45-69 (267)
317 3fdi_A Uncharacterized protein 88.2 0.27 9.4E-06 47.3 3.4 25 206-230 7-31 (201)
318 3v9p_A DTMP kinase, thymidylat 88.2 0.59 2E-05 45.9 5.8 28 205-232 25-52 (227)
319 3kjh_A CO dehydrogenase/acetyl 88.1 0.33 1.1E-05 47.7 4.1 32 208-239 3-34 (254)
320 3gfo_A Cobalt import ATP-bindi 88.1 0.21 7.1E-06 50.8 2.5 24 204-227 33-56 (275)
321 2olj_A Amino acid ABC transpor 88.0 0.23 7.7E-06 50.1 2.8 25 204-228 49-73 (263)
322 3cmu_A Protein RECA, recombina 88.0 1.1 3.7E-05 57.2 9.4 57 184-240 361-418 (2050)
323 3ug7_A Arsenical pump-driving 88.0 0.64 2.2E-05 48.9 6.3 38 203-240 24-61 (349)
324 3lv8_A DTMP kinase, thymidylat 87.9 0.72 2.5E-05 45.6 6.3 35 205-239 27-62 (236)
325 4g1u_C Hemin import ATP-bindin 87.9 0.22 7.5E-06 50.3 2.5 24 204-227 36-59 (266)
326 1ji0_A ABC transporter; ATP bi 87.8 0.22 7.6E-06 49.4 2.5 24 204-227 31-54 (240)
327 3hjn_A DTMP kinase, thymidylat 87.8 0.82 2.8E-05 43.8 6.5 33 207-239 2-34 (197)
328 2ghi_A Transport protein; mult 87.8 0.24 8.2E-06 49.8 2.8 25 204-228 45-69 (260)
329 3ea0_A ATPase, para family; al 87.7 0.53 1.8E-05 46.2 5.3 29 204-232 3-32 (245)
330 2vp4_A Deoxynucleoside kinase; 87.7 0.22 7.4E-06 49.0 2.4 25 204-228 19-43 (230)
331 1m8p_A Sulfate adenylyltransfe 87.7 0.46 1.6E-05 53.5 5.4 28 204-231 395-422 (573)
332 1g6h_A High-affinity branched- 87.7 0.23 7.8E-06 49.9 2.5 24 204-227 32-55 (257)
333 1vpl_A ABC transporter, ATP-bi 87.7 0.25 8.4E-06 49.6 2.8 24 204-227 40-63 (256)
334 1z2a_A RAS-related protein RAB 87.6 0.34 1.2E-05 44.0 3.6 24 205-228 5-28 (168)
335 4tmk_A Protein (thymidylate ki 87.6 0.78 2.7E-05 44.6 6.3 27 206-232 4-30 (213)
336 2ff7_A Alpha-hemolysin translo 87.6 0.23 7.9E-06 49.5 2.5 25 204-228 34-58 (247)
337 4dzz_A Plasmid partitioning pr 87.6 0.47 1.6E-05 45.2 4.7 35 206-240 2-37 (206)
338 2h92_A Cytidylate kinase; ross 87.6 0.26 8.8E-06 47.7 2.8 24 206-229 4-27 (219)
339 2pze_A Cystic fibrosis transme 87.6 0.24 8.1E-06 48.8 2.5 26 204-229 33-58 (229)
340 2gks_A Bifunctional SAT/APS ki 87.6 0.61 2.1E-05 52.2 6.2 28 204-231 371-398 (546)
341 2ixe_A Antigen peptide transpo 87.5 0.25 8.6E-06 50.0 2.8 25 204-228 44-68 (271)
342 1p5z_B DCK, deoxycytidine kina 87.5 0.17 5.7E-06 50.9 1.4 26 204-229 23-48 (263)
343 2wjg_A FEOB, ferrous iron tran 87.5 0.25 8.7E-06 46.2 2.6 24 205-228 7-30 (188)
344 3ld9_A DTMP kinase, thymidylat 87.5 0.38 1.3E-05 47.1 4.0 28 204-231 20-47 (223)
345 4akg_A Glutathione S-transfera 87.4 1.4 4.7E-05 58.2 10.0 143 206-375 1268-1452(2695)
346 1fzq_A ADP-ribosylation factor 87.4 0.41 1.4E-05 44.7 4.0 25 204-228 15-39 (181)
347 3gmt_A Adenylate kinase; ssgci 87.4 0.3 1E-05 48.0 3.2 24 206-229 9-32 (230)
348 1sgw_A Putative ABC transporte 87.4 0.21 7.1E-06 48.7 2.0 25 204-228 34-58 (214)
349 2ged_A SR-beta, signal recogni 87.4 0.32 1.1E-05 45.7 3.3 25 204-228 47-71 (193)
350 3con_A GTPase NRAS; structural 87.3 0.29 1E-05 45.8 3.0 23 206-228 22-44 (190)
351 2fz4_A DNA repair protein RAD2 87.3 3.4 0.00012 40.5 10.9 38 187-229 95-132 (237)
352 4gzl_A RAS-related C3 botulinu 87.2 0.34 1.2E-05 46.3 3.4 24 205-228 30-53 (204)
353 2yz2_A Putative ABC transporte 87.2 0.27 9.2E-06 49.6 2.8 24 204-227 32-55 (266)
354 1kao_A RAP2A; GTP-binding prot 87.2 0.31 1.1E-05 44.2 3.0 23 206-228 4-26 (167)
355 2www_A Methylmalonic aciduria 87.2 0.57 1.9E-05 49.3 5.4 29 204-232 73-101 (349)
356 2ffh_A Protein (FFH); SRP54, s 87.1 0.55 1.9E-05 50.7 5.2 29 204-232 97-125 (425)
357 1svi_A GTP-binding protein YSX 87.1 0.24 8.1E-06 46.7 2.2 25 204-228 22-46 (195)
358 2nzj_A GTP-binding protein REM 87.0 0.38 1.3E-05 44.1 3.6 23 205-227 4-26 (175)
359 1bif_A 6-phosphofructo-2-kinas 87.0 0.53 1.8E-05 51.6 5.3 30 204-233 38-67 (469)
360 2qi9_C Vitamin B12 import ATP- 87.0 0.27 9.1E-06 49.2 2.5 26 204-229 25-50 (249)
361 1z08_A RAS-related protein RAB 87.0 0.32 1.1E-05 44.4 3.0 24 205-228 6-29 (170)
362 1c1y_A RAS-related protein RAP 86.9 0.32 1.1E-05 44.1 3.0 22 207-228 5-26 (167)
363 1nij_A Hypothetical protein YJ 86.9 0.34 1.2E-05 50.3 3.4 25 204-228 3-27 (318)
364 1r8s_A ADP-ribosylation factor 86.9 0.34 1.2E-05 44.0 3.1 21 208-228 3-23 (164)
365 3sop_A Neuronal-specific septi 86.9 0.31 1.1E-05 49.3 3.1 22 207-228 4-25 (270)
366 1tq4_A IIGP1, interferon-induc 86.8 0.29 9.8E-06 52.7 2.8 24 204-227 68-91 (413)
367 2nq2_C Hypothetical ABC transp 86.8 0.28 9.6E-06 49.1 2.6 25 204-228 30-54 (253)
368 1ek0_A Protein (GTP-binding pr 86.8 0.34 1.1E-05 44.1 3.0 22 207-228 5-26 (170)
369 3q85_A GTP-binding protein REM 86.8 0.32 1.1E-05 44.4 2.8 22 206-227 3-24 (169)
370 1m7b_A RND3/RHOE small GTP-bin 86.7 0.33 1.1E-05 45.4 2.9 24 205-228 7-30 (184)
371 2erx_A GTP-binding protein DI- 86.7 0.31 1E-05 44.5 2.6 22 206-227 4-25 (172)
372 2lkc_A Translation initiation 86.7 0.36 1.2E-05 44.5 3.1 24 204-227 7-30 (178)
373 3q72_A GTP-binding protein RAD 86.6 0.31 1E-05 44.4 2.6 21 207-227 4-24 (166)
374 3f9v_A Minichromosome maintena 86.6 0.19 6.5E-06 57.0 1.4 49 181-229 294-351 (595)
375 1z0j_A RAB-22, RAS-related pro 86.6 0.34 1.2E-05 44.1 3.0 23 206-228 7-29 (170)
376 2ihy_A ABC transporter, ATP-bi 86.6 0.28 9.6E-06 49.9 2.5 25 204-228 46-70 (279)
377 1u8z_A RAS-related protein RAL 86.6 0.47 1.6E-05 43.0 3.9 24 205-228 4-27 (168)
378 3fkq_A NTRC-like two-domain pr 86.5 0.63 2.1E-05 49.4 5.3 38 203-240 141-179 (373)
379 3vkw_A Replicase large subunit 86.5 1.4 4.7E-05 47.6 8.0 25 203-227 159-183 (446)
380 1nrj_B SR-beta, signal recogni 86.4 0.4 1.4E-05 46.1 3.4 25 204-228 11-35 (218)
381 2gj8_A MNME, tRNA modification 86.4 0.34 1.2E-05 45.0 2.8 23 206-228 5-27 (172)
382 3ihw_A Centg3; RAS, centaurin, 86.4 0.35 1.2E-05 45.4 3.0 24 205-228 20-43 (184)
383 1g16_A RAS-related protein SEC 86.4 0.36 1.2E-05 44.0 2.9 23 206-228 4-26 (170)
384 1ky3_A GTP-binding protein YPT 86.4 0.36 1.2E-05 44.6 3.0 25 204-228 7-31 (182)
385 1wms_A RAB-9, RAB9, RAS-relate 86.4 0.36 1.2E-05 44.4 3.0 24 205-228 7-30 (177)
386 3kta_A Chromosome segregation 86.3 0.37 1.3E-05 45.1 3.0 24 206-229 27-50 (182)
387 3io3_A DEHA2D07832P; chaperone 86.3 0.64 2.2E-05 48.8 5.1 38 203-240 16-55 (348)
388 1r2q_A RAS-related protein RAB 86.2 0.37 1.3E-05 43.8 3.0 23 206-228 7-29 (170)
389 4f4c_A Multidrug resistance pr 86.1 1.4 4.7E-05 54.8 8.8 25 204-228 443-467 (1321)
390 3iqw_A Tail-anchored protein t 86.1 0.65 2.2E-05 48.5 5.0 37 204-240 15-51 (334)
391 2hxs_A RAB-26, RAS-related pro 86.0 0.37 1.3E-05 44.4 2.9 24 205-228 6-29 (178)
392 3t1o_A Gliding protein MGLA; G 86.0 0.4 1.4E-05 45.0 3.1 27 205-231 14-40 (198)
393 2iwr_A Centaurin gamma 1; ANK 86.0 0.32 1.1E-05 45.0 2.4 23 206-228 8-30 (178)
394 3c5c_A RAS-like protein 12; GD 86.0 0.38 1.3E-05 45.2 3.0 24 205-228 21-44 (187)
395 3fvq_A Fe(3+) IONS import ATP- 85.9 0.39 1.3E-05 50.6 3.3 25 204-228 29-53 (359)
396 1x6v_B Bifunctional 3'-phospho 85.9 0.48 1.6E-05 53.7 4.1 27 204-230 51-77 (630)
397 3vr4_D V-type sodium ATPase su 85.9 0.43 1.5E-05 51.6 3.6 89 205-296 151-258 (465)
398 2fn4_A P23, RAS-related protei 85.8 0.51 1.7E-05 43.4 3.7 25 204-228 8-32 (181)
399 1m2o_B GTP-binding protein SAR 85.8 0.39 1.3E-05 45.3 2.9 23 206-228 24-46 (190)
400 2yv5_A YJEQ protein; hydrolase 85.8 0.51 1.7E-05 48.5 4.0 31 191-226 156-186 (302)
401 1z0f_A RAB14, member RAS oncog 85.8 0.4 1.4E-05 44.1 3.0 24 205-228 15-38 (179)
402 1upt_A ARL1, ADP-ribosylation 85.8 0.4 1.4E-05 43.7 3.0 24 205-228 7-30 (171)
403 2cjw_A GTP-binding protein GEM 85.7 0.4 1.4E-05 45.4 3.0 22 206-227 7-28 (192)
404 3nh6_A ATP-binding cassette SU 85.7 0.29 1E-05 50.5 2.1 24 204-227 79-102 (306)
405 3pqc_A Probable GTP-binding pr 85.6 0.47 1.6E-05 44.4 3.4 25 204-228 22-46 (195)
406 3bc1_A RAS-related protein RAB 85.6 0.41 1.4E-05 44.7 3.0 24 205-228 11-34 (195)
407 2cxx_A Probable GTP-binding pr 85.5 0.39 1.3E-05 44.8 2.8 22 207-228 3-24 (190)
408 4dsu_A GTPase KRAS, isoform 2B 85.5 0.42 1.4E-05 44.5 3.0 23 206-228 5-27 (189)
409 3def_A T7I23.11 protein; chlor 85.4 0.64 2.2E-05 46.6 4.5 25 204-228 35-59 (262)
410 3kkq_A RAS-related protein M-R 85.4 0.43 1.5E-05 44.3 3.0 24 205-228 18-41 (183)
411 2y8e_A RAB-protein 6, GH09086P 85.3 0.43 1.5E-05 43.9 2.9 22 206-227 15-36 (179)
412 2bbs_A Cystic fibrosis transme 85.3 0.38 1.3E-05 49.2 2.7 25 204-228 63-87 (290)
413 1mh1_A RAC1; GTP-binding, GTPa 85.3 0.44 1.5E-05 44.2 3.0 23 206-228 6-28 (186)
414 2bme_A RAB4A, RAS-related prot 85.2 0.43 1.5E-05 44.3 2.9 24 205-228 10-33 (186)
415 1lw7_A Transcriptional regulat 85.2 0.44 1.5E-05 50.4 3.3 26 205-230 170-195 (365)
416 2oil_A CATX-8, RAS-related pro 85.1 0.44 1.5E-05 44.8 3.0 24 205-228 25-48 (193)
417 3hdt_A Putative kinase; struct 85.1 0.52 1.8E-05 46.2 3.5 26 205-230 14-39 (223)
418 3bwd_D RAC-like GTP-binding pr 85.1 0.45 1.5E-05 44.0 3.0 23 206-228 9-31 (182)
419 2a9k_A RAS-related protein RAL 85.0 0.46 1.6E-05 44.1 3.0 24 205-228 18-41 (187)
420 3t5g_A GTP-binding protein RHE 85.0 0.46 1.6E-05 44.0 2.9 23 205-227 6-28 (181)
421 3tmk_A Thymidylate kinase; pho 85.0 0.56 1.9E-05 45.7 3.6 27 205-231 5-31 (216)
422 3tui_C Methionine import ATP-b 85.0 0.47 1.6E-05 50.1 3.3 24 204-227 53-76 (366)
423 1h65_A Chloroplast outer envel 85.0 0.69 2.3E-05 46.5 4.5 25 204-228 38-62 (270)
424 2efe_B Small GTP-binding prote 84.9 0.46 1.6E-05 43.9 3.0 24 205-228 12-35 (181)
425 3cbq_A GTP-binding protein REM 84.9 0.35 1.2E-05 46.0 2.1 23 204-226 22-44 (195)
426 1f6b_A SAR1; gtpases, N-termin 84.9 0.4 1.4E-05 45.6 2.5 23 205-227 25-47 (198)
427 2atv_A RERG, RAS-like estrogen 84.8 0.46 1.6E-05 44.8 3.0 24 205-228 28-51 (196)
428 3tw8_B RAS-related protein RAB 84.8 0.48 1.7E-05 43.6 3.0 24 204-227 8-31 (181)
429 3dz8_A RAS-related protein RAB 84.8 0.49 1.7E-05 44.5 3.1 24 205-228 23-46 (191)
430 2g6b_A RAS-related protein RAB 84.8 0.47 1.6E-05 43.7 3.0 24 205-228 10-33 (180)
431 2yyz_A Sugar ABC transporter, 84.8 0.48 1.6E-05 50.0 3.3 25 204-228 28-52 (359)
432 3rlf_A Maltose/maltodextrin im 84.7 0.48 1.7E-05 50.3 3.3 25 204-228 28-52 (381)
433 3ez2_A Plasmid partition prote 84.7 1.2 4.2E-05 47.5 6.6 29 203-231 106-135 (398)
434 3cio_A ETK, tyrosine-protein k 84.7 1.2 4E-05 45.7 6.2 38 203-240 102-140 (299)
435 1z47_A CYSA, putative ABC-tran 84.6 0.46 1.6E-05 50.0 3.0 25 204-228 40-64 (355)
436 2it1_A 362AA long hypothetical 84.6 0.49 1.7E-05 50.0 3.3 25 204-228 28-52 (362)
437 3clv_A RAB5 protein, putative; 84.6 0.48 1.6E-05 44.5 3.0 24 205-228 7-30 (208)
438 2bov_A RAla, RAS-related prote 84.6 0.48 1.6E-05 44.9 3.0 24 205-228 14-37 (206)
439 1vg8_A RAS-related protein RAB 84.5 0.49 1.7E-05 44.9 3.0 25 204-228 7-31 (207)
440 2oze_A ORF delta'; para, walke 84.5 0.64 2.2E-05 47.4 4.0 35 205-239 34-71 (298)
441 2ew1_A RAS-related protein RAB 84.4 0.49 1.7E-05 45.2 2.9 24 205-228 26-49 (201)
442 1gwn_A RHO-related GTP-binding 84.3 0.5 1.7E-05 45.3 2.9 24 205-228 28-51 (205)
443 3oes_A GTPase rhebl1; small GT 84.3 0.5 1.7E-05 44.9 2.9 25 204-228 23-47 (201)
444 1pui_A ENGB, probable GTP-bind 84.3 0.34 1.2E-05 46.2 1.8 24 204-227 25-48 (210)
445 1v43_A Sugar-binding transport 84.3 0.52 1.8E-05 50.0 3.3 25 204-228 36-60 (372)
446 2fg5_A RAB-22B, RAS-related pr 84.2 0.51 1.7E-05 44.4 2.9 24 205-228 23-46 (192)
447 2fh5_B SR-beta, signal recogni 84.2 0.51 1.7E-05 45.2 3.0 24 205-228 7-30 (214)
448 1zd9_A ADP-ribosylation factor 84.1 0.52 1.8E-05 44.2 3.0 24 205-228 22-45 (188)
449 3reg_A RHO-like small GTPase; 84.1 0.52 1.8E-05 44.3 3.0 24 205-228 23-46 (194)
450 2c61_A A-type ATP synthase non 84.0 0.69 2.4E-05 50.3 4.2 88 205-295 152-258 (469)
451 2gf0_A GTP-binding protein DI- 84.0 0.52 1.8E-05 44.3 2.9 23 205-227 8-30 (199)
452 3d31_A Sulfate/molybdate ABC t 84.0 0.44 1.5E-05 50.0 2.6 25 204-228 25-49 (348)
453 2gf9_A RAS-related protein RAB 84.0 0.54 1.8E-05 44.0 3.0 24 205-228 22-45 (189)
454 2a5j_A RAS-related protein RAB 83.9 0.54 1.8E-05 44.2 3.0 24 205-228 21-44 (191)
455 2g3y_A GTP-binding protein GEM 83.8 0.51 1.8E-05 45.7 2.8 23 205-227 37-59 (211)
456 3tkl_A RAS-related protein RAB 83.8 0.55 1.9E-05 44.1 3.0 24 205-228 16-39 (196)
457 1g29_1 MALK, maltose transport 83.8 0.52 1.8E-05 50.0 3.0 25 204-228 28-52 (372)
458 1z06_A RAS-related protein RAB 83.7 0.56 1.9E-05 43.9 3.0 24 205-228 20-43 (189)
459 4dkx_A RAS-related protein RAB 83.7 0.55 1.9E-05 45.7 3.0 21 207-227 15-35 (216)
460 3bfv_A CAPA1, CAPB2, membrane 83.7 1.4 4.9E-05 44.3 6.2 38 203-240 80-118 (271)
461 1zbd_A Rabphilin-3A; G protein 83.6 0.5 1.7E-05 44.8 2.6 24 205-228 8-31 (203)
462 3llu_A RAS-related GTP-binding 83.6 0.46 1.6E-05 45.0 2.3 24 205-228 20-43 (196)
463 1byi_A Dethiobiotin synthase; 83.5 1 3.5E-05 43.5 4.9 27 206-232 2-29 (224)
464 2p5s_A RAS and EF-hand domain 83.5 0.57 2E-05 44.4 3.0 25 204-228 27-51 (199)
465 2qnr_A Septin-2, protein NEDD5 83.4 0.5 1.7E-05 48.6 2.7 21 207-227 20-40 (301)
466 1x3s_A RAS-related protein RAB 83.4 0.58 2E-05 43.8 3.0 24 205-228 15-38 (195)
467 1tf7_A KAIC; homohexamer, hexa 83.4 0.99 3.4E-05 50.2 5.3 38 194-231 270-307 (525)
468 1moz_A ARL1, ADP-ribosylation 83.3 0.43 1.5E-05 44.2 2.0 24 204-227 17-40 (183)
469 1oxx_K GLCV, glucose, ABC tran 83.2 0.42 1.4E-05 50.4 2.0 25 204-228 30-54 (353)
470 2bcg_Y Protein YP2, GTP-bindin 83.2 0.59 2E-05 44.4 2.9 24 205-228 8-31 (206)
471 3gqb_B V-type ATP synthase bet 83.1 0.95 3.2E-05 49.0 4.7 26 205-230 147-172 (464)
472 3gd7_A Fusion complex of cysti 83.1 0.61 2.1E-05 49.7 3.3 35 204-240 46-80 (390)
473 1p9r_A General secretion pathw 83.1 1 3.4E-05 48.6 5.0 85 204-301 166-251 (418)
474 1jwy_B Dynamin A GTPase domain 83.0 0.63 2.1E-05 47.8 3.3 25 204-228 23-47 (315)
475 2h17_A ADP-ribosylation factor 83.0 0.54 1.8E-05 43.7 2.5 24 205-228 21-44 (181)
476 2b6h_A ADP-ribosylation factor 82.8 0.57 1.9E-05 44.2 2.6 23 205-227 29-51 (192)
477 1zj6_A ADP-ribosylation factor 82.8 0.6 2.1E-05 43.6 2.8 24 204-227 15-38 (187)
478 2atx_A Small GTP binding prote 82.8 0.63 2.2E-05 43.7 2.9 24 205-228 18-41 (194)
479 2q3h_A RAS homolog gene family 82.8 0.6 2.1E-05 44.1 2.8 24 205-228 20-43 (201)
480 3lxx_A GTPase IMAP family memb 82.8 0.71 2.4E-05 45.3 3.4 25 204-228 28-52 (239)
481 2j0v_A RAC-like GTP-binding pr 82.8 0.63 2.1E-05 44.5 2.9 24 205-228 9-32 (212)
482 2woo_A ATPase GET3; tail-ancho 82.8 1.2 4.1E-05 46.3 5.3 37 204-240 18-54 (329)
483 2ck3_A ATP synthase subunit al 82.7 1.1 3.8E-05 49.1 5.1 55 204-261 161-222 (510)
484 1c9k_A COBU, adenosylcobinamid 82.7 0.56 1.9E-05 44.3 2.5 29 208-240 2-30 (180)
485 2fv8_A H6, RHO-related GTP-bin 82.7 0.63 2.2E-05 44.4 2.9 23 206-228 26-48 (207)
486 1wcv_1 SOJ, segregation protei 82.7 0.81 2.8E-05 45.5 3.8 37 204-240 5-42 (257)
487 4bas_A ADP-ribosylation factor 82.6 0.71 2.4E-05 43.4 3.2 24 204-227 16-39 (199)
488 2qe7_A ATP synthase subunit al 82.6 3.2 0.00011 45.3 8.7 88 204-296 161-264 (502)
489 1ksh_A ARF-like protein 2; sma 82.5 0.6 2E-05 43.5 2.6 25 204-228 17-41 (186)
490 2o52_A RAS-related protein RAB 82.5 0.62 2.1E-05 44.2 2.8 24 204-227 24-47 (200)
491 3cph_A RAS-related protein SEC 82.4 0.66 2.3E-05 44.2 3.0 24 205-228 20-43 (213)
492 3ch4_B Pmkase, phosphomevalona 82.4 1 3.4E-05 43.3 4.1 26 204-229 10-35 (202)
493 1ihu_A Arsenical pump-driving 82.4 1 3.6E-05 50.8 5.0 36 204-239 7-42 (589)
494 2j1l_A RHO-related GTP-binding 82.4 0.63 2.2E-05 44.8 2.8 23 205-227 34-56 (214)
495 2hup_A RAS-related protein RAB 82.4 0.67 2.3E-05 44.1 2.9 24 205-228 29-52 (201)
496 2gza_A Type IV secretion syste 82.3 0.55 1.9E-05 49.6 2.5 35 205-240 175-209 (361)
497 2gco_A H9, RHO-related GTP-bin 82.3 0.68 2.3E-05 44.0 2.9 23 206-228 26-48 (201)
498 2qu8_A Putative nucleolar GTP- 82.1 0.8 2.7E-05 44.5 3.5 25 204-228 28-52 (228)
499 1ega_A Protein (GTP-binding pr 82.1 0.73 2.5E-05 47.3 3.3 24 205-228 8-31 (301)
500 2fu5_C RAS-related protein RAB 82.0 0.43 1.5E-05 44.3 1.4 23 205-227 8-30 (183)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=2e-43 Score=335.80 Aligned_cols=166 Identities=49% Similarity=0.779 Sum_probs=143.9
Q ss_pred CCcceEEecCCcccccCchHHHHHHHHHhCCCceEEcC-CCCCCCcccHHHHHHHHhccceeEEeccCcccchhhHHHHH
Q 005191 3 SCKYDVFLSFRGEDTRDNFLSHLVVALQEKKIKTFIDE-ELTRGDQISPALVKAIEESMISVIIFSKNYASSKWCLDELV 81 (709)
Q Consensus 3 ~~~ydvFiS~~~~D~~~~f~~~L~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~ai~~S~~~ivvlS~~y~~S~wc~~El~ 81 (709)
+++|||||||+|+|++.+|+++|+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||+||++|+||++||.
T Consensus 6 ~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~ 85 (176)
T 3jrn_A 6 ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELV 85 (176)
T ss_dssp -CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHH
T ss_pred CCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHH
Confidence 57899999999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHhhhhCCceeEeEEeecCCCcccccCCchhhhhhhhhhhhccchhHHHHHHHHHHHhhhccCCCCCCCCcchhhhHH
Q 005191 82 KILKCHKKNIQLVIPIFYNVDPSVVRNQTGSFKDAFVKHDKQFNKKMPEKVQKWRAVLTEASNLSGWDSNTTRPDAKLVK 161 (709)
Q Consensus 82 ~~~~~~~~~~~~vlPvf~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~v~~w~~aL~~v~~~~g~~~~~~~~e~~~i~ 161 (709)
+|++|.+..++.|+||||+|+|++||+|+|+|+++|.+|+.+.. ++++++||+||.++++++||++. .+|+++|+
T Consensus 86 ~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~---~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i~ 160 (176)
T 3jrn_A 86 TIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASRED---PEKVLKWRQALTNFAQLSGDCSG--DDDSKLVD 160 (176)
T ss_dssp HHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSC---HHHHHHHHHHHHHHTTSCCEECC--SCHHHHHH
T ss_pred HHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccC---HHHHHHHHHHHHHHhcccceecC--CCHHHHHH
Confidence 99999988999999999999999999999999999999998833 38999999999999999999984 67999999
Q ss_pred HHHHHHHhhhhc
Q 005191 162 EITADILEKLEK 173 (709)
Q Consensus 162 ~i~~~i~~~l~~ 173 (709)
+|+.+|+++|++
T Consensus 161 ~Iv~~v~~~l~~ 172 (176)
T 3jrn_A 161 KIANEISNKKTI 172 (176)
T ss_dssp HHHHHHHTTCC-
T ss_pred HHHHHHHHHhcC
Confidence 999999999987
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=3e-43 Score=339.53 Aligned_cols=169 Identities=43% Similarity=0.804 Sum_probs=160.4
Q ss_pred CCCcceEEecCCcccccCchHHHHHHHHHhCCCceEEcC-CCCCCCcccHHHHHHHHhccceeEEeccCcccchhhHHHH
Q 005191 2 ASCKYDVFLSFRGEDTRDNFLSHLVVALQEKKIKTFIDE-ELTRGDQISPALVKAIEESMISVIIFSKNYASSKWCLDEL 80 (709)
Q Consensus 2 ~~~~ydvFiS~~~~D~~~~f~~~L~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~ai~~S~~~ivvlS~~y~~S~wc~~El 80 (709)
+.++|||||||+|+|++++|+++|+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||+||++|.||++||
T Consensus 32 ~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL 111 (204)
T 3ozi_A 32 PSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMEL 111 (204)
T ss_dssp --CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHH
T ss_pred CCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHH
Confidence 468999999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhh-CCceeEeEEeecCCCcccccCCchhhhhhhhhhhhccchhHHHHHHHHHHHhhhccCCCCCCCCcchhhh
Q 005191 81 VKILKCHKK-NIQLVIPIFYNVDPSVVRNQTGSFKDAFVKHDKQFNKKMPEKVQKWRAVLTEASNLSGWDSNTTRPDAKL 159 (709)
Q Consensus 81 ~~~~~~~~~-~~~~vlPvf~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~v~~w~~aL~~v~~~~g~~~~~~~~e~~~ 159 (709)
.+|++|.+. .++.|+||||+|+|++||+|+|+|+++|.+|+.++.. +++++||.||.++++++||++..+.++.++
T Consensus 112 ~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~---~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~ 188 (204)
T 3ozi_A 112 AEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDG---QTIQNWKDALKKVGDLKGWHIGKNDKQGAI 188 (204)
T ss_dssp HHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCH---HHHHHHHHHHHHHHTSCBEEECTTSCHHHH
T ss_pred HHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCH---HHHHHHHHHHHHHhccCceecCCCCCHHHH
Confidence 999999865 5789999999999999999999999999999998865 789999999999999999999988889999
Q ss_pred HHHHHHHHHhhhhc
Q 005191 160 VKEITADILEKLEK 173 (709)
Q Consensus 160 i~~i~~~i~~~l~~ 173 (709)
|++|+.+|+++|+.
T Consensus 189 i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 189 ADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999875
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.4e-41 Score=388.18 Aligned_cols=298 Identities=18% Similarity=0.165 Sum_probs=236.8
Q ss_pred cccchhhhHHHhhhhcc-CCCceEEEEEccCCCchhHHHHHHHH----HhhhcccceEEEeeecccccccCCHHHHHHHH
Q 005191 185 IGLESHVEQVRSLLAIG-LPDVRLVGIWGMGGIGKTTIAGVVFN----QFSQKFEGKYFMANVREESEKCGGLVHLRNQV 259 (709)
Q Consensus 185 vGR~~el~~L~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~----~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~l 259 (709)
+||+.++++|.++|..+ .++.++|+|+||||+||||||+++|+ ++..+|+.++|+. ++.... .+...++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~--~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP--KSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST--THHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC--CCHHHHHHHH
Confidence 49999999999999765 34589999999999999999999996 6888999999995 433221 3577899999
Q ss_pred HHHhcCCCC--CCCCCC------hhHHHHHHHccC-ceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCchhhhhhc
Q 005191 260 LSKLLGENF--DIGTPK------IPQYIRDRLQRM-KVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDKTILERY 330 (709)
Q Consensus 260 l~~l~~~~~--~~~~~~------~~~~l~~~L~~k-r~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~~~~ 330 (709)
+.+++.... ...+.+ +...+++.|.++ |+||||||||+.+++ .+.. .+||+||||||+..++..+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGC
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHc
Confidence 999865421 111111 478899999996 999999999998866 2221 2799999999999998877
Q ss_pred C-cceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhhcCCChhhHHHHHHH-hhcCC
Q 005191 331 G-THRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSFHRKSKPDWVNTLNN-LKRIS 408 (709)
Q Consensus 331 ~-~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~~~~~~ew~~~L~~-L~~~~ 408 (709)
+ ...+|+|++|+.++|++||.++++.... ++...+++.+|+++|+|+||||+++|+.|+.++. +|...+.. +....
T Consensus 282 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~ 359 (549)
T 2a5y_B 282 SQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRG 359 (549)
T ss_dssp CSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHC
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhccc
Confidence 5 4478999999999999999999876533 3577889999999999999999999999987642 23232322 33324
Q ss_pred CCcHHhHHHHhhcCCCHHHHHHHH-----------hccccccCcchhHHHHHHhcC--Cch-----------HHHHHHHH
Q 005191 409 DSDIYGVLKIGYDELSWEEKNLFL-----------DIACFFNGDDREHVMWILNDD--YYS-----------VQYGLNVL 464 (709)
Q Consensus 409 ~~~i~~~L~~Sy~~L~~~~k~~fl-----------~lA~Fp~~~~~~~l~~l~~~~--g~~-----------~~~~l~~L 464 (709)
..++..++..||+.||++.|.||+ |||+||++++.+ +.+|.++ |+. +..+|++|
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L 437 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRL 437 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHH
Confidence 567888999999999999999999 999999998766 7788887 443 23489999
Q ss_pred HhCCCeEEe----CCEEEEcHHHHHHHHHHHhhhc
Q 005191 465 VNKSLIKIS----YNKLQMHDLLQEMGREIVCQEF 495 (709)
Q Consensus 465 ~~rsLI~~~----~~~~~mHdlvr~~a~~~~~~e~ 495 (709)
+++||++.. ..+|+|||+||+||++++.+++
T Consensus 438 ~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 438 SKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 999999976 2479999999999999887765
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.1e-37 Score=382.87 Aligned_cols=307 Identities=20% Similarity=0.258 Sum_probs=246.9
Q ss_pred CCCCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHH---hhhcccceEEEeeecccccccCCH
Q 005191 176 AAISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQ---FSQKFEGKYFMANVREESEKCGGL 252 (709)
Q Consensus 176 ~~~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~v~~~~~~~~~~~~l 252 (709)
..|..+..||||++++++|.++|...+++.++|+|+||||+||||||++++++ ...+|...+||..+..... ...
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~ 195 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK--SGL 195 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH--HHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc--hHH
Confidence 45667788999999999999999766667899999999999999999999986 3556877775555544322 233
Q ss_pred HHHHHHHHHHhcCCCCCCCC--C--C-hhHHHHHHHccC--ceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCchh
Q 005191 253 VHLRNQVLSKLLGENFDIGT--P--K-IPQYIRDRLQRM--KVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDKT 325 (709)
Q Consensus 253 ~~l~~~ll~~l~~~~~~~~~--~--~-~~~~l~~~L~~k--r~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~~ 325 (709)
...+..++..+......... . + +...++..+.++ |+||||||||+..+++.+ ++|++||||||++.
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 44455666666433221111 1 1 556667777666 999999999998877664 67899999999998
Q ss_pred hhhh-cCcceEEEecC-CChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhhcCCChhhHHHHHHH
Q 005191 326 ILER-YGTHRIYEVEG-LNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSFHRKSKPDWVNTLNN 403 (709)
Q Consensus 326 v~~~-~~~~~~~~L~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~~~~~~ew~~~L~~ 403 (709)
++.. ......+++++ |+.+||++||...++.. .+...+.+.+|+++|+|+||||+++|++|+.++ .+|...++.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~ 344 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 344 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHH
Confidence 8854 44567889996 99999999999887432 334556799999999999999999999998766 579999888
Q ss_pred hhcCCC-----------CcHHhHHHHhhcCCCHHHHHHHHhccccccCc--chhHHHHHHhcCCchHHHHHHHHHhCCCe
Q 005191 404 LKRISD-----------SDIYGVLKIGYDELSWEEKNLFLDIACFFNGD--DREHVMWILNDDYYSVQYGLNVLVNKSLI 470 (709)
Q Consensus 404 L~~~~~-----------~~i~~~L~~Sy~~L~~~~k~~fl~lA~Fp~~~--~~~~l~~l~~~~g~~~~~~l~~L~~rsLI 470 (709)
+..... ..+..+|..||+.||+++|.||++||+||+++ +.+.++.+|.+++..++.+|++|+++|||
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSC
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccce
Confidence 765431 34889999999999999999999999999885 78999999999999999999999999999
Q ss_pred EEe-CC---EEEEcHHHHHHHHHHHhhhc
Q 005191 471 KIS-YN---KLQMHDLLQEMGREIVCQEF 495 (709)
Q Consensus 471 ~~~-~~---~~~mHdlvr~~a~~~~~~e~ 495 (709)
+.. ++ +|+||++||+|+++.+.++.
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence 977 33 49999999999999877663
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=338.30 Aligned_cols=301 Identities=20% Similarity=0.252 Sum_probs=231.1
Q ss_pred CCCCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh---hhcccc-eEEEeeecccccccCC
Q 005191 176 AAISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF---SQKFEG-KYFMANVREESEKCGG 251 (709)
Q Consensus 176 ~~~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~---~~~f~~-~~~v~~~~~~~~~~~~ 251 (709)
..|..+..||||+.++++|.++|...+++.++|+|+||||+||||||.+++++. ..+|+. ++|+. +..... ..
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~~--~~ 194 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQDK--SG 194 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCCH--HH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCch--HH
Confidence 456677889999999999999998655678999999999999999999999864 677965 55554 433211 11
Q ss_pred HHHHHHHHHHHhcCCCC--CCCCC--C-hhHHHHHHHcc--CceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCch
Q 005191 252 LVHLRNQVLSKLLGENF--DIGTP--K-IPQYIRDRLQR--MKVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDK 324 (709)
Q Consensus 252 l~~l~~~ll~~l~~~~~--~~~~~--~-~~~~l~~~L~~--kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~ 324 (709)
+......+...++.... ..... + ....++..+.+ +++||||||+|+...++.+ +++++||||||+.
T Consensus 195 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 195 LLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCG
T ss_pred HHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCc
Confidence 22222333344432111 11111 1 55667777766 7899999999997776543 5789999999999
Q ss_pred hhhhhcCcceEEEe---cCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhhcCCChhhHHHHH
Q 005191 325 TILERYGTHRIYEV---EGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSFHRKSKPDWVNTL 401 (709)
Q Consensus 325 ~v~~~~~~~~~~~L---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~~~~~~ew~~~L 401 (709)
.++..+. ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.++... .+|...+
T Consensus 268 ~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l 342 (591)
T 1z6t_A 268 SVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYL 342 (591)
T ss_dssp GGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHH
T ss_pred HHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHH
Confidence 8776543 334555 5899999999999988532 223346789999999999999999999998753 4798888
Q ss_pred HHhhcCC-----------CCcHHhHHHHhhcCCCHHHHHHHHhccccccC--cchhHHHHHHhcCCchHHHHHHHHHhCC
Q 005191 402 NNLKRIS-----------DSDIYGVLKIGYDELSWEEKNLFLDIACFFNG--DDREHVMWILNDDYYSVQYGLNVLVNKS 468 (709)
Q Consensus 402 ~~L~~~~-----------~~~i~~~L~~Sy~~L~~~~k~~fl~lA~Fp~~--~~~~~l~~l~~~~g~~~~~~l~~L~~rs 468 (709)
+.+.... ...+..++..||+.||++.|.||+++|+||++ ++.+.+..+|..++..+..++++|+++|
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~ 422 (591)
T 1z6t_A 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKS 422 (591)
T ss_dssp HHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCc
Confidence 8876432 13688999999999999999999999999986 4778899999988778899999999999
Q ss_pred CeEEe--C--CEEEEcHHHHHHHHHHH
Q 005191 469 LIKIS--Y--NKLQMHDLLQEMGREIV 491 (709)
Q Consensus 469 LI~~~--~--~~~~mHdlvr~~a~~~~ 491 (709)
||+.. + ..|+||+++|+++++..
T Consensus 423 Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 423 LLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp SSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred CeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 99866 2 26999999999999873
No 6
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9e-35 Score=338.29 Aligned_cols=278 Identities=17% Similarity=0.141 Sum_probs=213.6
Q ss_pred CCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHH--HhhhcccceEEEeeecccccccCCHHHHHHHH
Q 005191 182 DGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFN--QFSQKFEGKYFMANVREESEKCGGLVHLRNQV 259 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~l 259 (709)
+..|||+.++++|.++|... ++.++|+|+||||+||||||+++++ +++.+|+..++|..++.. .+...+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~----~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC----NSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCS----SSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCC----CCHHHHHHHH
Confidence 44599999999999999753 3479999999999999999999997 478889985444445432 3455555555
Q ss_pred HHHh---cCCCC-CCCC-------CC-hhHHHHHHH---ccCceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCch
Q 005191 260 LSKL---LGENF-DIGT-------PK-IPQYIRDRL---QRMKVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDK 324 (709)
Q Consensus 260 l~~l---~~~~~-~~~~-------~~-~~~~l~~~L---~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~ 324 (709)
+..+ ..... .... .+ ....+++.| .++|+||||||||+.++|+.+. +||+||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 5543 11100 0000 01 345566655 5799999999999998888762 689999999999
Q ss_pred hhhhhcCcceEEEec------CCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhhcCC--Chhh
Q 005191 325 TILERYGTHRIYEVE------GLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSFHRK--SKPD 396 (709)
Q Consensus 325 ~v~~~~~~~~~~~L~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~~~--~~~e 396 (709)
.++..+.....|.++ +|+.+||++||++.. +.. ..++..++ |+|+||||+++|+.|+++ +.++
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 887644443456666 999999999999884 322 12333443 999999999999999886 5677
Q ss_pred HHHHHHHhhcCCCCcHHhHHHHhhcCCCHHH-HHHHHhccccccCc--chhHHHHHHhcCC-chHHHHHHHHHhCCCeEE
Q 005191 397 WVNTLNNLKRISDSDIYGVLKIGYDELSWEE-KNLFLDIACFFNGD--DREHVMWILNDDY-YSVQYGLNVLVNKSLIKI 472 (709)
Q Consensus 397 w~~~L~~L~~~~~~~i~~~L~~Sy~~L~~~~-k~~fl~lA~Fp~~~--~~~~l~~l~~~~g-~~~~~~l~~L~~rsLI~~ 472 (709)
|... ....+..+|..||+.||+++ |.||++||+||+++ +.+.+..+|.++| ..++.+|++|+++|||+.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSB
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEE
Confidence 8652 34679999999999999999 99999999999875 6678999999885 358889999999999998
Q ss_pred e--CCEEEEcHHHHHHH
Q 005191 473 S--YNKLQMHDLLQEMG 487 (709)
Q Consensus 473 ~--~~~~~mHdlvr~~a 487 (709)
. .++|+|||++++++
T Consensus 420 d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 420 QPKESTISIPSIYLELK 436 (1221)
T ss_dssp CSSSSEEBCCCHHHHHH
T ss_pred eCCCCEEEehHHHHHHh
Confidence 6 56899999998843
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.94 E-value=8.2e-28 Score=227.36 Aligned_cols=120 Identities=19% Similarity=0.386 Sum_probs=112.1
Q ss_pred CCCcceEEecCCcccccCchHHHHHHHHHhCCCceEEcC-CCCCCCcccHHHHHHHHhccceeEEeccCcccchhhHHHH
Q 005191 2 ASCKYDVFLSFRGEDTRDNFLSHLVVALQEKKIKTFIDE-ELTRGDQISPALVKAIEESMISVIIFSKNYASSKWCLDEL 80 (709)
Q Consensus 2 ~~~~ydvFiS~~~~D~~~~f~~~L~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~ai~~S~~~ivvlS~~y~~S~wc~~El 80 (709)
+.++|||||||+++| +..|+.+|+.+|+++|+++|+|+ ++.+|+.+.++|.++|++|+++|+|+|++|++|.||+.||
T Consensus 17 ~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El 95 (154)
T 3h16_A 17 SAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKEL 95 (154)
T ss_dssp -CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHH
T ss_pred CCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHH
Confidence 357899999999999 55799999999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCceeEeEEeecCCCcccccCCchhhhhhhhhh
Q 005191 81 VKILKCHKKNIQLVIPIFYNVDPSVVRNQTGSFKDAFVKHDK 122 (709)
Q Consensus 81 ~~~~~~~~~~~~~vlPvf~~v~p~~vr~~~g~~~~~~~~~~~ 122 (709)
..++++...+++.|+||||+|+|++|++|.|.|+++|.....
T Consensus 96 ~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~ 137 (154)
T 3h16_A 96 DGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS 137 (154)
T ss_dssp HHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT
T ss_pred HHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC
Confidence 999998877788999999999999999999999998876543
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.87 E-value=6.4e-24 Score=197.86 Aligned_cols=133 Identities=21% Similarity=0.351 Sum_probs=91.6
Q ss_pred CCcceEEecCCcccccCchHHHHHHHHHh--CCCceEEcC-CCCCCCcccHHHHHHHHhccceeEEeccCcccchhhHHH
Q 005191 3 SCKYDVFLSFRGEDTRDNFLSHLVVALQE--KKIKTFIDE-ELTRGDQISPALVKAIEESMISVIIFSKNYASSKWCLDE 79 (709)
Q Consensus 3 ~~~ydvFiS~~~~D~~~~f~~~L~~~L~~--~g~~~~~d~-~~~~g~~~~~~i~~ai~~S~~~ivvlS~~y~~S~wc~~E 79 (709)
+.+|||||||+++| ..||.+|+.+|++ .|+++|+++ ++.+|+.+.++|.+||++|+++|+|+|++|++|.||..|
T Consensus 8 ~k~YDvFISy~~~D--~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~E 85 (146)
T 3ub2_A 8 SKDYDVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQ 85 (146)
T ss_dssp SSSEEEEEECCGGG--HHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHH
T ss_pred CCcceEEEeCChhh--HHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHH
Confidence 45799999999999 5589999999998 599999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCceeEeEEeecCCCcccccCC--chhhhhhhhhhhhccchhHHHHHHHHHH
Q 005191 80 LVKILKCHKKNIQLVIPIFYNVDPSVVRNQTG--SFKDAFVKHDKQFNKKMPEKVQKWRAVL 139 (709)
Q Consensus 80 l~~~~~~~~~~~~~vlPvf~~v~p~~vr~~~g--~~~~~~~~~~~~~~~~~~~~v~~w~~aL 139 (709)
+..++.+...+..+||||||+|+++++..... .|.+. ..++..|.. +.+.|.+|++++
T Consensus 86 l~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~-~~~d~~f~~-l~~~v~~~~~~~ 145 (146)
T 3ub2_A 86 MLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDG-RGPDGGFRQ-VKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEET-TSGGGGHHH-HHHHHHHHHTTC
T ss_pred HHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeec-cChHhhHHH-HHHHHHHHHHhc
Confidence 99999987434447889999998776654332 11122 233444432 235677777653
No 9
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.81 E-value=2.6e-21 Score=181.32 Aligned_cols=100 Identities=23% Similarity=0.405 Sum_probs=90.1
Q ss_pred CCCcceEEecCCcccccCchHHH-HHHHHHhC--CCceEEcC-CCCCCCcccHHHHHHHHhccceeEEeccCcccchhhH
Q 005191 2 ASCKYDVFLSFRGEDTRDNFLSH-LVVALQEK--KIKTFIDE-ELTRGDQISPALVKAIEESMISVIIFSKNYASSKWCL 77 (709)
Q Consensus 2 ~~~~ydvFiS~~~~D~~~~f~~~-L~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~ai~~S~~~ivvlS~~y~~S~wc~ 77 (709)
.+..|||||||+++| ..||.+ |+..|+++ |+++|+|+ |+.+|+++.++|.+||++|+++|+|+||+|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D--~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERD--AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCccc--HHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 468899999999999 479997 99999987 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hhhCCceeEeEEee-cCC
Q 005191 78 DELVKILKC-HKKNIQLVIPIFYN-VDP 103 (709)
Q Consensus 78 ~El~~~~~~-~~~~~~~vlPvf~~-v~p 103 (709)
.|+..++.+ .+.++++||||||+ +++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~ 107 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEK 107 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCT
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCCh
Confidence 999998853 35566789999987 444
No 10
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.81 E-value=5.2e-21 Score=181.13 Aligned_cols=99 Identities=20% Similarity=0.343 Sum_probs=90.1
Q ss_pred CCcceEEecCCcccccCchHHHHHHHHHhC--CCceEEcC-CCCCCCcccHHHHHHHH-hccceeEEeccCcccchhhHH
Q 005191 3 SCKYDVFLSFRGEDTRDNFLSHLVVALQEK--KIKTFIDE-ELTRGDQISPALVKAIE-ESMISVIIFSKNYASSKWCLD 78 (709)
Q Consensus 3 ~~~ydvFiS~~~~D~~~~f~~~L~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~ai~-~S~~~ivvlS~~y~~S~wc~~ 78 (709)
+..|||||||+++| .+||.+|+.+|+++ |+++|+|+ ++.+|+++.++|.++|+ +|+++|+|+|++|++|.||..
T Consensus 14 ~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~ 91 (160)
T 2js7_A 14 PERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDF 91 (160)
T ss_dssp TTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHH
T ss_pred CcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHH
Confidence 57899999999999 78999999999985 69999999 99999999999999999 799999999999999999999
Q ss_pred HHHHHHHhh-hhCCceeEeEEeecCC
Q 005191 79 ELVKILKCH-KKNIQLVIPIFYNVDP 103 (709)
Q Consensus 79 El~~~~~~~-~~~~~~vlPvf~~v~p 103 (709)
|+..++.+. +..+++||||+|+.-+
T Consensus 92 El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 92 QTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHccCCCEEEEEEEcccc
Confidence 999999875 3445689999998654
No 11
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.80 E-value=1.3e-20 Score=181.29 Aligned_cols=97 Identities=24% Similarity=0.437 Sum_probs=84.7
Q ss_pred CCcceEEecCCcccccCchHHH-HHHHHHh--CCCceEEcC-CCCCCCcccHHHHHHHHhccceeEEeccCcccchhhHH
Q 005191 3 SCKYDVFLSFRGEDTRDNFLSH-LVVALQE--KKIKTFIDE-ELTRGDQISPALVKAIEESMISVIIFSKNYASSKWCLD 78 (709)
Q Consensus 3 ~~~ydvFiS~~~~D~~~~f~~~-L~~~L~~--~g~~~~~d~-~~~~g~~~~~~i~~ai~~S~~~ivvlS~~y~~S~wc~~ 78 (709)
+.+|||||||+++| .+||.+ |+..|++ .|+++|+|+ |+.+|+++.++|.+||++|+++|+|+||+|++|.||..
T Consensus 33 ~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~ 110 (178)
T 2j67_A 33 NVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHY 110 (178)
T ss_dssp SCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGT
T ss_pred CccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHH
Confidence 56899999999999 579986 9999998 899999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-hhCCceeEeEEeec
Q 005191 79 ELVKILKCH-KKNIQLVIPIFYNV 101 (709)
Q Consensus 79 El~~~~~~~-~~~~~~vlPvf~~v 101 (709)
|+..++.+. +..+++||||||+-
T Consensus 111 El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 111 EFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp HHHHTTCC-------CEEEEESSC
T ss_pred HHHHHHHHHHhcCCCEEEEEEecC
Confidence 999998644 44567899999883
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.79 E-value=8.3e-20 Score=172.67 Aligned_cols=100 Identities=22% Similarity=0.326 Sum_probs=88.0
Q ss_pred CcceEEecCCccccc---------CchHHHHHH-HHH-hCCCceEEcC-CCCCCCcccHHHHHHHHhccceeEEeccCcc
Q 005191 4 CKYDVFLSFRGEDTR---------DNFLSHLVV-ALQ-EKKIKTFIDE-ELTRGDQISPALVKAIEESMISVIIFSKNYA 71 (709)
Q Consensus 4 ~~ydvFiS~~~~D~~---------~~f~~~L~~-~L~-~~g~~~~~d~-~~~~g~~~~~~i~~ai~~S~~~ivvlS~~y~ 71 (709)
..|||||||+++|+. .+||.++.. .|+ +.|+++|+|+ |+.+|+.+.++|.++|++|+.+|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 379999999999963 468888665 699 7999999999 9999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHhh-hhCCceeEeEEeecCC
Q 005191 72 -SSKWCLDELVKILKCH-KKNIQLVIPIFYNVDP 103 (709)
Q Consensus 72 -~S~wc~~El~~~~~~~-~~~~~~vlPvf~~v~p 103 (709)
.|.||..|+..++.+. ..++.+||||+|+-.+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999876 5567899999887444
No 13
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.77 E-value=1.8e-17 Score=177.24 Aligned_cols=291 Identities=15% Similarity=0.093 Sum_probs=178.7
Q ss_pred CCCCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccc--cccCCHH
Q 005191 176 AAISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREES--EKCGGLV 253 (709)
Q Consensus 176 ~~~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~--~~~~~l~ 253 (709)
.++..+..|+||+.+++.|.+++..+ +++.|+|++|+|||||+++++++. . .+|+. ..... .......
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~-~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER----P-GILID-CRELYAERGHITRE 75 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS----S-EEEEE-HHHHHHTTTCBCHH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc----C-cEEEE-eecccccccCCCHH
Confidence 45566788999999999999998742 689999999999999999999875 1 45554 22211 0001334
Q ss_pred HHHHHHHHHhcC----------------CCCCCCCCC---hhHHHHHHHcc-CceEEEecCCCChhh---------hhhh
Q 005191 254 HLRNQVLSKLLG----------------ENFDIGTPK---IPQYIRDRLQR-MKVFIVLDDVNKYGQ---------LEYF 304 (709)
Q Consensus 254 ~l~~~ll~~l~~----------------~~~~~~~~~---~~~~l~~~L~~-kr~LLVLDdv~~~~~---------~~~l 304 (709)
.+...+...+.. ......... ....+.+.... ++++|||||++.... +..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 444544444321 000000111 23334444432 499999999965332 2222
Q ss_pred hcCCCCCCCCeEEEEEcCchhhhhh-----------c-CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHH
Q 005191 305 DGGLDRFGPGSRIIVTTRDKTILER-----------Y-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAA 372 (709)
Q Consensus 305 ~~~l~~~~~gsrIIvTTR~~~v~~~-----------~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv 372 (709)
..... ..++.++|+|++....... . .....+++.+|+.+|+.+++.......... ...+.+..++
T Consensus 156 ~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~ 232 (350)
T 2qen_A 156 AYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAV 232 (350)
T ss_dssp HHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHH
T ss_pred HHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Confidence 22111 1257889999887543221 1 113578999999999999997654211111 1235678999
Q ss_pred HHhcCCchHHHHHhhhhcC-CChhhHHHHHHHhhcCCCCcHHhHHHHhhcCC---CHHHHHHHHhccccccCcchhHHHH
Q 005191 373 HYAKGNPLALQVLGSSFHR-KSKPDWVNTLNNLKRISDSDIYGVLKIGYDEL---SWEEKNLFLDIACFFNGDDREHVMW 448 (709)
Q Consensus 373 ~~~gGlPLAL~~la~~L~~-~~~~ew~~~L~~L~~~~~~~i~~~L~~Sy~~L---~~~~k~~fl~lA~Fp~~~~~~~l~~ 448 (709)
+.|+|+|+++..++..+.. .+...+. ..+. +.+...+...+..+ ++..+.++..+|+ . ..+...+..
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~-g-~~~~~~l~~ 303 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAM---KRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL-G-YNRWSLIRD 303 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHH---HHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-T-CCSHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHH---HHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh-C-CCCHHHHHH
Confidence 9999999999999876532 2222221 1110 11112222223333 7899999999998 3 345566666
Q ss_pred HHh-----cCCchHHHHHHHHHhCCCeEEeCCEEEE-cHHHHHHHH
Q 005191 449 ILN-----DDYYSVQYGLNVLVNKSLIKISYNKLQM-HDLLQEMGR 488 (709)
Q Consensus 449 l~~-----~~g~~~~~~l~~L~~rsLI~~~~~~~~m-Hdlvr~~a~ 488 (709)
.+. ........+++.|.+.+||...++.|.+ |++++++.+
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 304 YLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 552 2223456789999999999988777765 889888764
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.74 E-value=3.1e-17 Score=175.76 Aligned_cols=291 Identities=14% Similarity=0.100 Sum_probs=173.0
Q ss_pred CCCCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccc-cccCCHHH
Q 005191 176 AAISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREES-EKCGGLVH 254 (709)
Q Consensus 176 ~~~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~-~~~~~l~~ 254 (709)
.++..+..|+||+++++.|.+ +.. +++.|+|++|+|||+|+++++++... ..+|+. ..... ........
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNL---PYIYLD-LRKFEERNYISYKD 76 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEE-GGGGTTCSCCCHHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEE-chhhccccCCCHHH
Confidence 445567889999999999999 763 69999999999999999999987643 245554 22210 00011222
Q ss_pred HHHHHHHHhc-------------CC-------C--CCCC----CCChhHHHHHHHcc---CceEEEecCCCChh-----h
Q 005191 255 LRNQVLSKLL-------------GE-------N--FDIG----TPKIPQYIRDRLQR---MKVFIVLDDVNKYG-----Q 300 (709)
Q Consensus 255 l~~~ll~~l~-------------~~-------~--~~~~----~~~~~~~l~~~L~~---kr~LLVLDdv~~~~-----~ 300 (709)
....+...+. .. . .... .......+.+.+.. ++++|||||++... .
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 2222222210 00 0 0000 11223333344432 49999999995422 2
Q ss_pred hhhhhcCCCCCCCCeEEEEEcCchhhhhh----------c-C-cceEEEecCCChHHHHHHhhhcccccCCCChhhHHHH
Q 005191 301 LEYFDGGLDRFGPGSRIIVTTRDKTILER----------Y-G-THRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHS 368 (709)
Q Consensus 301 ~~~l~~~l~~~~~gsrIIvTTR~~~v~~~----------~-~-~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~ 368 (709)
+..++..+....++.++|+|++....... . + ....+++.+|+.+|+.+++...........+. .
T Consensus 157 ~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~ 232 (357)
T 2fna_A 157 LLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----Y 232 (357)
T ss_dssp CHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----H
T ss_pred HHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----H
Confidence 22222221111247889999997643221 1 1 13678999999999999998754211111111 2
Q ss_pred HHHHHHhcCCchHHHHHhhhhcC-CChhhHHHH-HHHhhcCCCCcHHhHHHHhh---cCCCHHHHHHHHhccccccCcch
Q 005191 369 ETAAHYAKGNPLALQVLGSSFHR-KSKPDWVNT-LNNLKRISDSDIYGVLKIGY---DELSWEEKNLFLDIACFFNGDDR 443 (709)
Q Consensus 369 ~~Iv~~~gGlPLAL~~la~~L~~-~~~~ew~~~-L~~L~~~~~~~i~~~L~~Sy---~~L~~~~k~~fl~lA~Fp~~~~~ 443 (709)
..|++.|+|+|+++..++..+.. .+...|... .+... ..+..-+...+ ..|++..+.++..+|+ . . +.
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~ 305 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KW 305 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CH
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CH
Confidence 78999999999999999877643 233333211 11110 01111122111 1688999999999998 3 3 55
Q ss_pred hHHHHHH----h--cCCchHHHHHHHHHhCCCeEEeCCEEE-EcHHHHHHH
Q 005191 444 EHVMWIL----N--DDYYSVQYGLNVLVNKSLIKISYNKLQ-MHDLLQEMG 487 (709)
Q Consensus 444 ~~l~~l~----~--~~g~~~~~~l~~L~~rsLI~~~~~~~~-mHdlvr~~a 487 (709)
..+.... . ........+++.|.+.+||...++.|+ .|++++++.
T Consensus 306 ~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 306 SDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 6655432 2 122346778999999999998766676 589999874
No 15
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.68 E-value=9.3e-16 Score=168.02 Aligned_cols=284 Identities=13% Similarity=-0.011 Sum_probs=170.5
Q ss_pred CCCCCccccchhhhHHHhhh-hc--cC--CCceEEEE--EccCCCchhHHHHHHHHHhhhcc-----cc-eEEEeeeccc
Q 005191 179 SDSDGLIGLESHVEQVRSLL-AI--GL--PDVRLVGI--WGMGGIGKTTIAGVVFNQFSQKF-----EG-KYFMANVREE 245 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~f-----~~-~~~v~~~~~~ 245 (709)
..+..|+||+.+++.|.+.+ .. .. ...+.+.| +|++|+|||+||+.+++.....+ .. .+|+. ..
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 95 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN-AF-- 95 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE-GG--
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE-CC--
Confidence 34578999999999999988 52 11 23566777 99999999999999999875532 22 23443 11
Q ss_pred ccccCCHHHHHHHHHHHhcCCCCCCCC--CChhHHHHHHHc--cCceEEEecCCCCh--------hhhhhhhcCCCCC--
Q 005191 246 SEKCGGLVHLRNQVLSKLLGENFDIGT--PKIPQYIRDRLQ--RMKVFIVLDDVNKY--------GQLEYFDGGLDRF-- 311 (709)
Q Consensus 246 ~~~~~~l~~l~~~ll~~l~~~~~~~~~--~~~~~~l~~~L~--~kr~LLVLDdv~~~--------~~~~~l~~~l~~~-- 311 (709)
.. .....+...++..++........ .+....+.+.+. +++++|||||++.. +.+..+...+...
T Consensus 96 -~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 96 -NA-PNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp -GC-CSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC
T ss_pred -CC-CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc
Confidence 11 45667788888887543221111 114455666654 67999999999653 3333333222111
Q ss_pred -C--CCeEEEEEcCchhhhhhc---------CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhc---
Q 005191 312 -G--PGSRIIVTTRDKTILERY---------GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAK--- 376 (709)
Q Consensus 312 -~--~gsrIIvTTR~~~v~~~~---------~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~g--- 376 (709)
+ .+..+|+||+...+.... .....+.+++|+.+++.++|..++...........+....+++.++
T Consensus 174 ~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 174 RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDK 253 (412)
T ss_dssp TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGG
T ss_pred CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhc
Confidence 2 455688888765432111 1122389999999999999976542111111122456888999999
Q ss_pred ---CCchHHHHHhhhhc------CC---ChhhHHHHHHHhhcCCCCcHHhHHHHhhcCCCHHHHHHHHhcccccc----C
Q 005191 377 ---GNPLALQVLGSSFH------RK---SKPDWVNTLNNLKRISDSDIYGVLKIGYDELSWEEKNLFLDIACFFN----G 440 (709)
Q Consensus 377 ---GlPLAL~~la~~L~------~~---~~~ew~~~L~~L~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~lA~Fp~----~ 440 (709)
|+|..+..+..... +. +.+.+...+..... ...+..++..||+..+.++..+|.+.. .
T Consensus 254 ~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 254 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEW 327 (412)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSS
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCC
Confidence 99976665543321 11 22333333332110 234556778999999999999997642 2
Q ss_pred cchhHHHH----HH-hcCC------chHHHHHHHHHhCCCeEEe
Q 005191 441 DDREHVMW----IL-NDDY------YSVQYGLNVLVNKSLIKIS 473 (709)
Q Consensus 441 ~~~~~l~~----l~-~~~g------~~~~~~l~~L~~rsLI~~~ 473 (709)
++...+.. +. ...| .....+++.|.+.+||...
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 23333221 22 1112 2256789999999999875
No 16
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.56 E-value=5.9e-13 Score=144.27 Aligned_cols=277 Identities=13% Similarity=0.026 Sum_probs=173.4
Q ss_pred CCCccccchhhhHHHhhhhc--cCCCceEEEEEccCCCchhHHHHHHHHHhhhcc-------cc-eEEEeeecccccccC
Q 005191 181 SDGLIGLESHVEQVRSLLAI--GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF-------EG-KYFMANVREESEKCG 250 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-------~~-~~~v~~~~~~~~~~~ 250 (709)
+..++||+.+++++.+++.. .....+.+.|+|++|+|||+||+.+++.+.... .. .+++. ... . .
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~~~---~-~ 93 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CRE---V-G 93 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-HHH---H-C
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-Ccc---C-C
Confidence 47899999999999988864 234467899999999999999999999874431 22 23333 211 1 3
Q ss_pred -CHHHHHHHHHHHhcCCCCCCCCC---ChhHHHHHHHccCceEEEecCCCChh------h-hhhhhcCCCCCCCCeEEEE
Q 005191 251 -GLVHLRNQVLSKLLGENFDIGTP---KIPQYIRDRLQRMKVFIVLDDVNKYG------Q-LEYFDGGLDRFGPGSRIIV 319 (709)
Q Consensus 251 -~l~~l~~~ll~~l~~~~~~~~~~---~~~~~l~~~L~~kr~LLVLDdv~~~~------~-~~~l~~~l~~~~~gsrIIv 319 (709)
....+...++..+.+........ +....+.+.+..++.+|||||++... . +..+.... .+..+|+
T Consensus 94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~ 169 (384)
T 2qby_B 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIM 169 (384)
T ss_dssp SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEE
Confidence 55667777777773322221111 14666777777766699999996532 2 33333332 6788999
Q ss_pred EcCchhhhhhc------CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhc---CCch-HHHHHhhhh
Q 005191 320 TTRDKTILERY------GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAK---GNPL-ALQVLGSSF 389 (709)
Q Consensus 320 TTR~~~v~~~~------~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~g---GlPL-AL~~la~~L 389 (709)
||+........ .....+.+++++.++..+++..++...........+..+.+++.++ |+|. ++..+-...
T Consensus 170 ~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~ 249 (384)
T 2qby_B 170 ISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAA 249 (384)
T ss_dssp ECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 99875321111 1123899999999999999998753111111122345778888888 9887 333332222
Q ss_pred --c----CCChhhHHHHHHHhhcCCCCcHHhHHHHhhcCCCHHHHHHHHhcccccc-CcchhHHHHHHhcCC------ch
Q 005191 390 --H----RKSKPDWVNTLNNLKRISDSDIYGVLKIGYDELSWEEKNLFLDIACFFN-GDDREHVMWILNDDY------YS 456 (709)
Q Consensus 390 --~----~~~~~ew~~~L~~L~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~lA~Fp~-~~~~~~l~~l~~~~g------~~ 456 (709)
. .-+.+.+...++... ...+..++..|++.++..+..++.... +...+....+....| ..
T Consensus 250 ~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 322 (384)
T 2qby_B 250 QLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRR 322 (384)
T ss_dssp HHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHH
T ss_pred HHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHH
Confidence 1 124566666666542 245777889999999999888887111 111112222222211 23
Q ss_pred HHHHHHHHHhCCCeEEe
Q 005191 457 VQYGLNVLVNKSLIKIS 473 (709)
Q Consensus 457 ~~~~l~~L~~rsLI~~~ 473 (709)
...++..|.++|+|...
T Consensus 323 ~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 323 FSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 56789999999999874
No 17
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=4.7e-13 Score=144.69 Aligned_cols=283 Identities=14% Similarity=0.088 Sum_probs=169.8
Q ss_pred CCCCCccccchhhhHHHhhhhcc--CCCceEEEEEccCCCchhHHHHHHHHHhhhccc---ceEEEeeecccccccCCHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIG--LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFE---GKYFMANVREESEKCGGLV 253 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~v~~~~~~~~~~~~l~ 253 (709)
..+..|+||+.+++.+.+++... ....+.+.|+|++|+||||||+.+++.....+. ..+|+. ... . ....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~~~---~-~~~~ 91 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-TRQ---I-DTPY 91 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-HHH---H-CSHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-CCC---C-CCHH
Confidence 44588999999999999988752 345678999999999999999999998766542 233333 211 1 3344
Q ss_pred HHHHHHHHHhcCCCCCCCC-C-ChhHHHHHHHcc--CceEEEecCCCCh------hhhhhhhcCCCC-CCCCeEEEEEcC
Q 005191 254 HLRNQVLSKLLGENFDIGT-P-KIPQYIRDRLQR--MKVFIVLDDVNKY------GQLEYFDGGLDR-FGPGSRIIVTTR 322 (709)
Q Consensus 254 ~l~~~ll~~l~~~~~~~~~-~-~~~~~l~~~L~~--kr~LLVLDdv~~~------~~~~~l~~~l~~-~~~gsrIIvTTR 322 (709)
.+...++..++........ . +....+.+.+.. ++.+||||+++.. +.+..+...+.. ...+..+|+||+
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 5566665555332211111 1 134455555543 4899999999542 233333322211 134567788887
Q ss_pred chhhhhhcC-------cceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhc---CCchHHHHHhhhhc--
Q 005191 323 DKTILERYG-------THRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAK---GNPLALQVLGSSFH-- 390 (709)
Q Consensus 323 ~~~v~~~~~-------~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~g---GlPLAL~~la~~L~-- 390 (709)
......... ....+.+++++.++..+++...+...........+..+.+++.++ |+|..+..+.....
T Consensus 172 ~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 172 DVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp CGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 664322211 125899999999999999987653111111223455677888888 99985444332221
Q ss_pred ----C---CChhhHHHHHHHhhcCCCCcHHhHHHHhhcCCCHHHHHHHHhcccccc-C---cchh-------HHHHHHhc
Q 005191 391 ----R---KSKPDWVNTLNNLKRISDSDIYGVLKIGYDELSWEEKNLFLDIACFFN-G---DDRE-------HVMWILND 452 (709)
Q Consensus 391 ----~---~~~~ew~~~L~~L~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~lA~Fp~-~---~~~~-------~l~~l~~~ 452 (709)
+ -+.+.+...++... ...+..++..||+..+.++..++.+.. + +... .+......
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~ 324 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV 324 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC
Confidence 1 13444555554432 245677788999999999888885322 2 2232 22222222
Q ss_pred CC---chHHHHHHHHHhCCCeEEe
Q 005191 453 DY---YSVQYGLNVLVNKSLIKIS 473 (709)
Q Consensus 453 ~g---~~~~~~l~~L~~rsLI~~~ 473 (709)
.. .....+++.|.+.|+|...
T Consensus 325 ~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 325 EAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 22 2356789999999999864
No 18
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.48 E-value=4.5e-12 Score=137.43 Aligned_cols=303 Identities=13% Similarity=0.047 Sum_probs=181.5
Q ss_pred CCCCccccchhhhHHHhhhhcc----CCCceEEEEEccCCCchhHHHHHHHHHhhhcc-cceEEEeeecccccccCCHHH
Q 005191 180 DSDGLIGLESHVEQVRSLLAIG----LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF-EGKYFMANVREESEKCGGLVH 254 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~v~~~~~~~~~~~~l~~ 254 (709)
.++.++||+.+++.+.+++... .+..+.+.|+|++|+|||||++.+++...... ...+++. .. . ......
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~-~~---~-~~~~~~ 89 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN-GF---I-YRNFTA 89 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE-TT---T-CCSHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe-Cc---c-CCCHHH
Confidence 4578999999999999988752 22234899999999999999999998875542 2233333 11 1 134566
Q ss_pred HHHHHHHHhcCCCCCCCCC--ChhHHHHHHHc--cCceEEEecCCCC--hhhhhhhhcCCCCCC----CCeEEEEEcCch
Q 005191 255 LRNQVLSKLLGENFDIGTP--KIPQYIRDRLQ--RMKVFIVLDDVNK--YGQLEYFDGGLDRFG----PGSRIIVTTRDK 324 (709)
Q Consensus 255 l~~~ll~~l~~~~~~~~~~--~~~~~l~~~L~--~kr~LLVLDdv~~--~~~~~~l~~~l~~~~----~gsrIIvTTR~~ 324 (709)
+...++..++......... +....+.+.+. +++.+||||+++. ......+...+.... .+..+|++|+..
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 7777777774332211111 13444544443 5688999999965 344445544432211 467788888766
Q ss_pred hhhhhcC-------cceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHh---------cCCchHHHHHhhh
Q 005191 325 TILERYG-------THRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYA---------KGNPLALQVLGSS 388 (709)
Q Consensus 325 ~v~~~~~-------~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~---------gGlPLAL~~la~~ 388 (709)
....... ....+.+++++.++..+++...+...........+..+.+++.+ +|+|..+..+...
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~ 249 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHH
Confidence 4332221 12378999999999999998876321111122345678899999 7988655554332
Q ss_pred hc------CC---ChhhHHHHHHHhhcCCCCcHHhHHHHhhcCCCHHHHHHHHhccccc---c--CcchhHHHHHHhc--
Q 005191 389 FH------RK---SKPDWVNTLNNLKRISDSDIYGVLKIGYDELSWEEKNLFLDIACFF---N--GDDREHVMWILND-- 452 (709)
Q Consensus 389 L~------~~---~~~ew~~~L~~L~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~lA~Fp---~--~~~~~~l~~l~~~-- 452 (709)
.. +. +.+.....+... ... .+...+..|++..+.++..++.+. . ......+...+..
T Consensus 250 a~~~a~~~~~~~i~~~~v~~~~~~~---~~~----~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEV---LFG----ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHH---SCC----CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHHH---hhh----hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 21 11 222333333322 122 233446678999999988888654 2 2344444332221
Q ss_pred -----C---CchHHHHHHHHHhCCCeEEe-C-------CEEE-------EcHHHHHHHHHHHhhh
Q 005191 453 -----D---YYSVQYGLNVLVNKSLIKIS-Y-------NKLQ-------MHDLLQEMGREIVCQE 494 (709)
Q Consensus 453 -----~---g~~~~~~l~~L~~rsLI~~~-~-------~~~~-------mHdlvr~~a~~~~~~e 494 (709)
. ......+++.|.+.++|... . +++. .|+++..+...++.+|
T Consensus 323 ~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 323 EEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 1 12355789999999999874 2 2222 3677776666666554
No 19
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.47 E-value=2.9e-12 Score=138.67 Aligned_cols=282 Identities=13% Similarity=0.053 Sum_probs=170.3
Q ss_pred CCCCCccccchhhhHHHhhhhcc--CCCceEEEEEccCCCchhHHHHHHHHHhhhcc-----cc-eEEEeeecccccccC
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIG--LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF-----EG-KYFMANVREESEKCG 250 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~~-~~~v~~~~~~~~~~~ 250 (709)
..+..++||+.+++.+..++... ....+.+.|+|++|+|||+||+.+++...... .. .+++. .. ...
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~-~~----~~~ 90 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN-AR----HRE 90 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE-TT----TSC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE-CC----cCC
Confidence 34588999999999999988642 34567899999999999999999999765432 22 23333 11 114
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCC--ChhHHHHHHHc--cCceEEEecCCCChhh-------hhhhhcCCCCC--CCCeEE
Q 005191 251 GLVHLRNQVLSKLLGENFDIGTP--KIPQYIRDRLQ--RMKVFIVLDDVNKYGQ-------LEYFDGGLDRF--GPGSRI 317 (709)
Q Consensus 251 ~l~~l~~~ll~~l~~~~~~~~~~--~~~~~l~~~L~--~kr~LLVLDdv~~~~~-------~~~l~~~l~~~--~~gsrI 317 (709)
....+...++..++......... +....+.+.+. +++.+||||+++.... +..+....... ..+..+
T Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 170 (387)
T 2v1u_A 91 TPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSL 170 (387)
T ss_dssp SHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEE
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEE
Confidence 55667777887775432221111 13455555653 4588999999975432 22222222111 345678
Q ss_pred EEEcCchhhh--------hhcCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhc---CCchHHHHH-
Q 005191 318 IVTTRDKTIL--------ERYGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAK---GNPLALQVL- 385 (709)
Q Consensus 318 IvTTR~~~v~--------~~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~g---GlPLAL~~l- 385 (709)
|.||+..... ..+ ....+.+++++.++..+++...+...........+..+.++++++ |+|..+..+
T Consensus 171 I~~t~~~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 171 VGITNSLGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp EEECSCSTTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred EEEECCCchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 8888765321 111 125789999999999999988753211111222345778888888 999433332
Q ss_pred hhhh---c--C---CChhhHHHHHHHhhcCCCCcHHhHHHHhhcCCCHHHHHHHHhccccccCc---chhHHHH----HH
Q 005191 386 GSSF---H--R---KSKPDWVNTLNNLKRISDSDIYGVLKIGYDELSWEEKNLFLDIACFFNGD---DREHVMW----IL 450 (709)
Q Consensus 386 a~~L---~--~---~~~~ew~~~L~~L~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~lA~Fp~~~---~~~~l~~----l~ 450 (709)
.... . + -+.+.+...++... ...+..++..|++..+..+..++....+. ....+.+ +.
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 2221 1 1 13455555555432 23566778999999999888887443232 2332222 22
Q ss_pred hcC---C---chHHHHHHHHHhCCCeEEe
Q 005191 451 NDD---Y---YSVQYGLNVLVNKSLIKIS 473 (709)
Q Consensus 451 ~~~---g---~~~~~~l~~L~~rsLI~~~ 473 (709)
... . ..+..+++.|...|++...
T Consensus 323 ~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 323 STLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 111 1 1356789999999999874
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.45 E-value=3.8e-14 Score=169.85 Aligned_cols=100 Identities=19% Similarity=0.339 Sum_probs=89.6
Q ss_pred CCcceEEecCCcccccCchH-HHHHHHHHh-----CCCceEEcC-CCCCCCcccHHHHHHHHhccceeEEeccCcccchh
Q 005191 3 SCKYDVFLSFRGEDTRDNFL-SHLVVALQE-----KKIKTFIDE-ELTRGDQISPALVKAIEESMISVIIFSKNYASSKW 75 (709)
Q Consensus 3 ~~~ydvFiS~~~~D~~~~f~-~~L~~~L~~-----~g~~~~~d~-~~~~g~~~~~~i~~ai~~S~~~ivvlS~~y~~S~w 75 (709)
.++|||||||+++| ..|| .+|...||. .|+++|+++ |+.||+.+.++|.+||++|+++|+|+|++|+.|.|
T Consensus 668 ~~~yd~fisy~~~d--~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~w 745 (844)
T 3j0a_A 668 MYKYDAYLCFSSKD--FTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGW 745 (844)
T ss_dssp CCCCSEEEECCSTT--HHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTS
T ss_pred ceeccEEEEeeCCc--HHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChH
Confidence 46899999999999 5677 779999985 589999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhh-hhCCceeEeEEeecCCC
Q 005191 76 CLDELVKILKCH-KKNIQLVIPIFYNVDPS 104 (709)
Q Consensus 76 c~~El~~~~~~~-~~~~~~vlPvf~~v~p~ 104 (709)
|..|+..++.+. ++.+++||||||+.-|.
T Consensus 746 c~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 746 CLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp TTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 999999888765 55667899999985543
No 21
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.27 E-value=6.9e-11 Score=118.40 Aligned_cols=199 Identities=14% Similarity=0.099 Sum_probs=119.5
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRN 257 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~ 257 (709)
|.....++||+..++.+..++..+. ..+.+.|+|++|+||||||+.+++.....+.....-. ..... ..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~---------~~~~~-~~ 87 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC---------GVCDN-CR 87 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC---------SCSHH-HH
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC---------cccHH-HH
Confidence 3445679999999999999987542 2358899999999999999999987654321100000 00000 00
Q ss_pred HHHHHhcCCCCCC--CCCChhHHHHHHH--------ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCchh
Q 005191 258 QVLSKLLGENFDI--GTPKIPQYIRDRL--------QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDKT 325 (709)
Q Consensus 258 ~ll~~l~~~~~~~--~~~~~~~~l~~~L--------~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~~ 325 (709)
.+........... ........+.+.+ .+++.+|||||++. ...++.+...+.....+..+|+||+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp HHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred HHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 0000000000000 0000111111111 24679999999964 4455666555544456788888887653
Q ss_pred hhh-h-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhh
Q 005191 326 ILE-R-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSF 389 (709)
Q Consensus 326 v~~-~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L 389 (709)
... . ......+++++++.++..+++...+..... ....+..+.|++.|+|+|..+..+...+
T Consensus 168 ~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 168 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 221 1 122368899999999999999887643221 1223567899999999999988876544
No 22
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.16 E-value=7.8e-10 Score=109.24 Aligned_cols=189 Identities=11% Similarity=0.103 Sum_probs=116.6
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc-ccceEEEeeecccccccCCHHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK-FEGKYFMANVREESEKCGGLVHLR 256 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~v~~~~~~~~~~~~l~~l~ 256 (709)
|.....++||+..++.+.+++.... .+.+.|+|++|+|||+||+.+++.+... +...+...+... . .....+.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~ 86 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD---E-RGIDVVR 86 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC---T-TCHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc---c-cChHHHH
Confidence 3445679999999999999997542 3348999999999999999999876443 222222221111 1 2222222
Q ss_pred HHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEcCchhhh-hh-cCc
Q 005191 257 NQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTTRDKTIL-ER-YGT 332 (709)
Q Consensus 257 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTTR~~~v~-~~-~~~ 332 (709)
. .+........ ....++.+|||||++.. ...+.+...+.....+.++|+||+..... .. ...
T Consensus 87 ~-~~~~~~~~~~-------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 87 H-KIKEFARTAP-------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp H-HHHHHHTSCC-------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred H-HHHHHhcccC-------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence 2 1221111000 01246889999999653 34444544444345678888888765321 11 112
Q ss_pred ceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhh
Q 005191 333 HRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSS 388 (709)
Q Consensus 333 ~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~ 388 (709)
...+++++++.++..+++...+...... ...+..+.+++.++|+|..+..+...
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3478999999999999998876432211 22356778899999999976554443
No 23
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.04 E-value=1.2e-09 Score=115.03 Aligned_cols=186 Identities=15% Similarity=0.212 Sum_probs=113.7
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc-ccc-eEEEeeecccccccCCHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK-FEG-KYFMANVREESEKCGGLVHL 255 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~-~~~v~~~~~~~~~~~~l~~l 255 (709)
|.....++|++..++.+.+++..+. .+.+.|+|++|+|||++|+.+++.+... +.. .+.+. . +.. .+.. .
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~---~~~-~~~~-~ 88 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN-A---SDD-RGID-V 88 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC-T---TSC-CSHH-H
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec-C---ccc-cChH-H
Confidence 3445679999999999999987543 2338999999999999999999986432 222 12222 1 111 1221 2
Q ss_pred HHHHHHHhcCCCCCCCCCChhHHHHHHH-ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCchhh-hhh-c
Q 005191 256 RNQVLSKLLGENFDIGTPKIPQYIRDRL-QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDKTI-LER-Y 330 (709)
Q Consensus 256 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L-~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~~v-~~~-~ 330 (709)
.+.++..+..... .+ .+++.++|+||++. ....+.+...+.....++.+|+||+...- ... .
T Consensus 89 i~~~~~~~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~ 155 (323)
T 1sxj_B 89 VRNQIKHFAQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ 155 (323)
T ss_dssp HHTHHHHHHHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH
Confidence 2222222210000 01 34588999999975 33444454444433567888888866432 111 1
Q ss_pred CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchH-HHHHh
Q 005191 331 GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLA-LQVLG 386 (709)
Q Consensus 331 ~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLA-L~~la 386 (709)
.....+++++++.++..+++...+...... ...+....+++.++|+|.. +..+.
T Consensus 156 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 156 SQCAILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhceEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 223589999999999999998776322211 1235678899999999954 44443
No 24
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.95 E-value=4.1e-08 Score=103.50 Aligned_cols=266 Identities=14% Similarity=0.075 Sum_probs=156.2
Q ss_pred CCCCCCccccchhhhHHHhhhhc---cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAI---GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVH 254 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~ 254 (709)
|.....++|++..++.+...+.. .......+.|+|++|+|||+||+.+++.....| .++. .... .....
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~~~~----~~~~~ 79 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GPAI----EKPGD 79 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-TTTC----CSHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-cccc----CChHH
Confidence 34557899999999999888763 122346788999999999999999998764222 2222 1111 11111
Q ss_pred HHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh--hhhhhhcCCCCC------------------CCC
Q 005191 255 LRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG--QLEYFDGGLDRF------------------GPG 314 (709)
Q Consensus 255 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~--~~~~l~~~l~~~------------------~~g 314 (709)
+ ...+.. . ..++.+|+||+++... ....+...+... .++
T Consensus 80 l----~~~l~~----------------~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 80 L----AAILAN----------------S-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp H----HHHHTT----------------T-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred H----HHHHHH----------------h-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 1 111110 0 1346799999997532 222222111110 124
Q ss_pred eEEEEEcCchhhh-hhc--CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhhcC
Q 005191 315 SRIIVTTRDKTIL-ERY--GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSFHR 391 (709)
Q Consensus 315 srIIvTTR~~~v~-~~~--~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~~ 391 (709)
.++|.||...... ... ....++.+++++.++..+++...+..... ....+..+.++++++|+|..+..+...+..
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLFRRVRD 216 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHHHTT
T ss_pred EEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 5677666544211 111 12357899999999999998877633221 122456788999999999888776655432
Q ss_pred C---------ChhhHHHHHHHhhcCCCCcHHhHHHHhhcCCCHHHHHHHHhcccc-c-cCcchhHHHHHHhcCCchHHHH
Q 005191 392 K---------SKPDWVNTLNNLKRISDSDIYGVLKIGYDELSWEEKNLFLDIACF-F-NGDDREHVMWILNDDYYSVQYG 460 (709)
Q Consensus 392 ~---------~~~ew~~~L~~L~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~lA~F-p-~~~~~~~l~~l~~~~g~~~~~~ 460 (709)
. +.+.....+.. +......|++.++..+..+... . +......+.+.+..........
T Consensus 217 ~a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~ 284 (324)
T 1hqc_A 217 FAQVAGEEVITRERALEALAA------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEV 284 (324)
T ss_dssp TSTTTSCSCCCHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHH------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHH
Confidence 1 12222222222 2223456788787777766543 2 2345777777765554445555
Q ss_pred HHH-HHhCCCeEEeCCEEEEcHHHHHH
Q 005191 461 LNV-LVNKSLIKISYNKLQMHDLLQEM 486 (709)
Q Consensus 461 l~~-L~~rsLI~~~~~~~~mHdlvr~~ 486 (709)
++. +++.++|+.......+-+...++
T Consensus 285 l~~~~i~~~li~~~~~g~~~~~~~~~~ 311 (324)
T 1hqc_A 285 HEPYLIRQGLLKRTPRGRVPTELAYRH 311 (324)
T ss_dssp THHHHHHTTSEEEETTEEEECHHHHHH
T ss_pred HhHHHHHhcchhcCCccceecHHHHHH
Confidence 655 88999998876555665555544
No 25
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=1e-08 Score=107.93 Aligned_cols=190 Identities=16% Similarity=0.165 Sum_probs=114.5
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe-eecccccccCCHHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA-NVREESEKCGGLVHLR 256 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~-~~~~~~~~~~~l~~l~ 256 (709)
|.....++|++..++.+.+++..+ ..+.+.|+|++|+|||++|+.+++.+........++. +.... .+.. ..
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~----~~~~-~~ 93 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE----RGIN-VI 93 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH----HHHH-TT
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc----CchH-HH
Confidence 344567999999999999998754 3334899999999999999999997643321111111 11110 0000 00
Q ss_pred HHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEcCchhh-hhhc-Cc
Q 005191 257 NQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTTRDKTI-LERY-GT 332 (709)
Q Consensus 257 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTTR~~~v-~~~~-~~ 332 (709)
...+....... ....+++.++|+||++.. +..+.+...+.....++++|+||..... .... ..
T Consensus 94 ~~~~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 94 REKVKEFARTK-------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp HHHHHHHHHSC-------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred HHHHHHHHhhC-------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 11111110000 001256789999999753 4455555444444567888888876532 1111 12
Q ss_pred ceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhh
Q 005191 333 HRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSF 389 (709)
Q Consensus 333 ~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L 389 (709)
...+++.+++.++..+++...+..... ....+..+.|++.++|+|..+..+...+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 247899999999999998876632221 1234567889999999998765554433
No 26
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.75 E-value=1.9e-07 Score=97.84 Aligned_cols=182 Identities=12% Similarity=0.129 Sum_probs=113.4
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh-cccceEEEeeecccccccCCHHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ-KFEGKYFMANVREESEKCGGLVHLR 256 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~v~~~~~~~~~~~~l~~l~ 256 (709)
|.....++|++..++.+.+++..+ ..+.+.|+|++|+|||++|+.+++.+.. .+...+...+....... ..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~----- 84 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI-DV----- 84 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT-TT-----
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh-HH-----
Confidence 334567999999999999988754 2333899999999999999999987632 22111111111110000 01
Q ss_pred HHHHHHhcCCCCCCCCCChhHHHHHHH------ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCchh-hh
Q 005191 257 NQVLSKLLGENFDIGTPKIPQYIRDRL------QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDKT-IL 327 (709)
Q Consensus 257 ~~ll~~l~~~~~~~~~~~~~~~l~~~L------~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~~-v~ 327 (709)
....+.... .+++.++|+|+++. .+..+.+...+.....+.++|+||.... +.
T Consensus 85 ------------------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~ 146 (319)
T 2chq_A 85 ------------------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRII 146 (319)
T ss_dssp ------------------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSC
T ss_pred ------------------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcc
Confidence 111122211 24578999999964 3445566666655556788888876553 11
Q ss_pred hh-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhh
Q 005191 328 ER-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGS 387 (709)
Q Consensus 328 ~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~ 387 (709)
.. ......+++.+++.++..+++...+..... ....+..+.+++.++|++..+.....
T Consensus 147 ~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 147 EPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV--KITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp HHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC--CBCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred hHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 122358899999999999999877632221 12245678888999999986654433
No 27
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.72 E-value=1.1e-07 Score=101.99 Aligned_cols=196 Identities=13% Similarity=0.102 Sum_probs=114.9
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQ 258 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ 258 (709)
.....++|++..++.+...+..+. ..+.+.|+|++|+||||+|+.+++.+....... ........ ....
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---------~~~~~~~~-~~~~ 81 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---------ATPCGVCD-NCRE 81 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---------SSCCSSSH-HHHH
T ss_pred CchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---------CCCCcccH-HHHH
Confidence 345679999999999999987542 245788999999999999999998764321100 00000000 0111
Q ss_pred HHHHhcCC-----CCCCCCCChhHHHHHHH-----ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCchh-
Q 005191 259 VLSKLLGE-----NFDIGTPKIPQYIRDRL-----QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDKT- 325 (709)
Q Consensus 259 ll~~l~~~-----~~~~~~~~~~~~l~~~L-----~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~~- 325 (709)
+....... .......+....+.+.+ .+++.++|+||++. ....+.+...+.....+..+|++|....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 11000000 00001111223333333 24578999999964 3445555554444455677777776542
Q ss_pred hhhh-cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhh
Q 005191 326 ILER-YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGS 387 (709)
Q Consensus 326 v~~~-~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~ 387 (709)
+... ......+++.+++.++..+++...+..... ....+....|++.++|+|..+..+..
T Consensus 162 l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred CcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 1111 122368899999999999999876632221 11235578899999999998776553
No 28
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.58 E-value=3.2e-07 Score=95.96 Aligned_cols=164 Identities=9% Similarity=0.004 Sum_probs=98.7
Q ss_pred CccccchhhhHHHhhhhc--cCCCceEEEEEccCCCchhHHHHHHHHHhhhccc-----c--eEEEeeecccccccCCHH
Q 005191 183 GLIGLESHVEQVRSLLAI--GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFE-----G--KYFMANVREESEKCGGLV 253 (709)
Q Consensus 183 ~~vGR~~el~~L~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-----~--~~~v~~~~~~~~~~~~l~ 253 (709)
.+.||++|+++|...|.. ..+....+.|+|++|+|||++++.+++++..... . .+++... ...+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~-----~~~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL-----ELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT-----CCC--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc-----ccCCHH
Confidence 388999999999988864 2345778899999999999999999998754321 1 2233311 113445
Q ss_pred HHHHHHHHHhcCCCCCCCCCChhHHHHHHH------ccCceEEEecCCCChhhhhhhhcCCCC---CCCCeEEEEEcCch
Q 005191 254 HLRNQVLSKLLGENFDIGTPKIPQYIRDRL------QRMKVFIVLDDVNKYGQLEYFDGGLDR---FGPGSRIIVTTRDK 324 (709)
Q Consensus 254 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L------~~kr~LLVLDdv~~~~~~~~l~~~l~~---~~~gsrIIvTTR~~ 324 (709)
.+...++.++.+..... ......+.+.+ .+++++++||+++...+-+.+...+.+ ......||.++...
T Consensus 96 ~~~~~I~~~L~g~~~~~--~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 96 ALYEKIWFAISKENLCG--DISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp HHHHHHHHHHSCCC--C--CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred HHHHHHHHHhcCCCCCc--hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCc
Confidence 67778888885443221 12233333332 356899999999764322222211111 11223344444332
Q ss_pred hh----h-----hhcCcceEEEecCCChHHHHHHhhhcc
Q 005191 325 TI----L-----ERYGTHRIYEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 325 ~v----~-----~~~~~~~~~~L~~L~~~ea~~Lf~~~a 354 (709)
+. + ..+ ....+.+++++.+|-.+++.+++
T Consensus 174 d~~~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 174 VTIREQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CCCHHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHH
T ss_pred ccchhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHH
Confidence 11 1 122 12578999999999999988776
No 29
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.57 E-value=1.1e-07 Score=95.14 Aligned_cols=176 Identities=12% Similarity=0.094 Sum_probs=101.1
Q ss_pred CCCCccccc---hhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHH
Q 005191 180 DSDGLIGLE---SHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLR 256 (709)
Q Consensus 180 ~~~~~vGR~---~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~ 256 (709)
..+.|+|++ ..++.+..+.... ..+.+.|+|++|+|||+||+.+++..........++. ....... +
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~---~---- 95 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASI---S---- 95 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGS---C----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHH---H----
Confidence 446788743 4455555555432 4578899999999999999999998765533444544 2111110 0
Q ss_pred HHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh--h--hhhhhcCCCCC-CCC-eEEEEEcCchh-----
Q 005191 257 NQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG--Q--LEYFDGGLDRF-GPG-SRIIVTTRDKT----- 325 (709)
Q Consensus 257 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~--~--~~~l~~~l~~~-~~g-srIIvTTR~~~----- 325 (709)
.+.. +.+ .++.+|||||++... . .+.+...+... ..+ .++|+||+...
T Consensus 96 ----------------~~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 96 ----------------TALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ----------------GGGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ----------------HHHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0000 011 346799999996432 1 22232221110 112 24777776431
Q ss_pred ----hhhhcCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhh
Q 005191 326 ----ILERYGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSS 388 (709)
Q Consensus 326 ----v~~~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~ 388 (709)
+...+.....+++++++.++..+++...+..... ....+..+.+++.++|++-.+..+...
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVLDR 219 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 1111112268999999999999999877632221 122456778889999998776655443
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.55 E-value=1.7e-06 Score=91.66 Aligned_cols=254 Identities=16% Similarity=0.132 Sum_probs=146.5
Q ss_pred CCCCCccccchhhhHHHhhhhcc---CCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIG---LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHL 255 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l 255 (709)
.....++|++..++.+..++... ......+.|+|++|+|||+||+.+++.....| +.+. .... .....+
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~~----~~~~~~ 97 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APMI----EKSGDL 97 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGGC----CSHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chhc----cchhHH
Confidence 34567999999999999988742 23456789999999999999999988754332 1111 1110 111111
Q ss_pred HHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh--hhhhhhhcCCCCC------------------CCCe
Q 005191 256 RNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY--GQLEYFDGGLDRF------------------GPGS 315 (709)
Q Consensus 256 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~--~~~~~l~~~l~~~------------------~~gs 315 (709)
..++.. ..++.+|+||+++.. .....+...+... .++.
T Consensus 98 -~~~~~~---------------------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 98 -AAILTN---------------------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp -HHHHHT---------------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred -HHHHHh---------------------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 111110 135679999999642 2222222211110 1234
Q ss_pred EEEEEcCchhh-hhhc--CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhhc--
Q 005191 316 RIIVTTRDKTI-LERY--GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSFH-- 390 (709)
Q Consensus 316 rIIvTTR~~~v-~~~~--~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~-- 390 (709)
.+|.+|..... .... .....+.+++++.++..+++...+.... .....+..+.+++.+.|+|-.+..+...+.
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 233 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRDF 233 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 56666654321 1111 1236899999999999999887763222 122345677888899999966655443321
Q ss_pred ----CC---ChhhHHHHHHHhhcCCCCcHHhHHHHhhcCCCHHHHHHHHhcccccc-CcchhHHHHHHhcCCchHHHHHH
Q 005191 391 ----RK---SKPDWVNTLNNLKRISDSDIYGVLKIGYDELSWEEKNLFLDIACFFN-GDDREHVMWILNDDYYSVQYGLN 462 (709)
Q Consensus 391 ----~~---~~~ew~~~L~~L~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~lA~Fp~-~~~~~~l~~l~~~~g~~~~~~l~ 462 (709)
+. +.+.....+.. +..+...++...+..+..++-... ......+...+..........++
T Consensus 234 a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~ 301 (338)
T 3pfi_A 234 ADVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIE 301 (338)
T ss_dssp HHHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTH
T ss_pred HHhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHh
Confidence 11 12222222222 223344566665666666655422 23577777777665555666677
Q ss_pred -HHHhCCCeEEeCCE
Q 005191 463 -VLVNKSLIKISYNK 476 (709)
Q Consensus 463 -~L~~rsLI~~~~~~ 476 (709)
.|++.++|......
T Consensus 302 ~~l~~~gli~~~~~g 316 (338)
T 3pfi_A 302 PYLLANGYIERTAKG 316 (338)
T ss_dssp HHHHHTTSEEEETTE
T ss_pred HHHHHcCceecCCCc
Confidence 89999999887433
No 31
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.54 E-value=1.3e-06 Score=90.08 Aligned_cols=183 Identities=20% Similarity=0.237 Sum_probs=105.5
Q ss_pred CCCCCCCccccchhhhHHHhhhhcc-----------CCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccc
Q 005191 177 AISDSDGLIGLESHVEQVRSLLAIG-----------LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREE 245 (709)
Q Consensus 177 ~~~~~~~~vGR~~el~~L~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~ 245 (709)
+......++|.+..+++|.+.+... ....+.+.|+|++|+|||+||+.+++.....| ........
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~----~~v~~~~~ 87 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF----IRVVGSEL 87 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE----EEEEGGGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehHHH
Confidence 3345577999999999998877431 13456789999999999999999998764322 11111111
Q ss_pred ccccCC-HHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh----------------hhhhhhhcCC
Q 005191 246 SEKCGG-LVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY----------------GQLEYFDGGL 308 (709)
Q Consensus 246 ~~~~~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~----------------~~~~~l~~~l 308 (709)
.....+ .... ....+.......+.+|+||+++.. ..+..+...+
T Consensus 88 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 148 (285)
T 3h4m_A 88 VKKFIGEGASL-------------------VKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM 148 (285)
T ss_dssp CCCSTTHHHHH-------------------HHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH
T ss_pred HHhccchHHHH-------------------HHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh
Confidence 111000 0000 111222233456789999999542 1122222221
Q ss_pred C--CCCCCeEEEEEcCchhhhh-----hcCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcC-Cch
Q 005191 309 D--RFGPGSRIIVTTRDKTILE-----RYGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKG-NPL 380 (709)
Q Consensus 309 ~--~~~~gsrIIvTTR~~~v~~-----~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gG-lPL 380 (709)
. ....+..||.||....... .......+.+++++.++..+++...+.......+ .....++..+.| .|-
T Consensus 149 ~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~ 225 (285)
T 3h4m_A 149 DGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGA 225 (285)
T ss_dssp HTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHH
T ss_pred hCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHH
Confidence 1 1134677888887653322 1123457899999999999999877633221111 124667777777 454
Q ss_pred HHHHH
Q 005191 381 ALQVL 385 (709)
Q Consensus 381 AL~~l 385 (709)
.|..+
T Consensus 226 ~i~~l 230 (285)
T 3h4m_A 226 ELKAI 230 (285)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 32
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.54 E-value=2.6e-07 Score=88.53 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=42.2
Q ss_pred CCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 180 DSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
....++||+++++.+.+.+... ..+.+.|+|++|+|||+||+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567999999999999998753 3466889999999999999999987644
No 33
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.47 E-value=4.9e-06 Score=85.31 Aligned_cols=197 Identities=18% Similarity=0.121 Sum_probs=102.7
Q ss_pred CCccccchhhhHHHh-------hhhc-cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHH
Q 005191 182 DGLIGLESHVEQVRS-------LLAI-GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLV 253 (709)
Q Consensus 182 ~~~vGR~~el~~L~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~ 253 (709)
..++|....++.+.. .+.. .....+.+.|+|++|+|||+||+.+++.....| +.+........ ....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~~g--~~~~ 107 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKMIG--FSET 107 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGCTT--CCHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHhcC--CchH
Confidence 467888877666665 2221 234568899999999999999999998743221 11211100000 0000
Q ss_pred HHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh------------hhhhhhhcCCC---CCCCCeEEE
Q 005191 254 HLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY------------GQLEYFDGGLD---RFGPGSRII 318 (709)
Q Consensus 254 ~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~------------~~~~~l~~~l~---~~~~gsrII 318 (709)
..... ....+......++.+|+||+++.. ..++.+...+. ..+....||
T Consensus 108 ~~~~~----------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 108 AKCQA----------------MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp HHHHH----------------HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred HHHHH----------------HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 00000 111222233456889999998542 11222322222 123445577
Q ss_pred EEcCchhhhhh---cC-cceEEEecCCCh-HHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc------hHHHHHhh
Q 005191 319 VTTRDKTILER---YG-THRIYEVEGLNC-NEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP------LALQVLGS 387 (709)
Q Consensus 319 vTTR~~~v~~~---~~-~~~~~~L~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP------LAL~~la~ 387 (709)
.||........ .+ ....+.+++++. ++..+++.... ..+ .+....+++.+.|.+ -++..+-.
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~ 244 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NFK---DKERTTIAQQVKGKKVWIGIKKLLMLIEM 244 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CSC---HHHHHHHHHHHTTSEEEECHHHHHHHHHH
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CCC---HHHHHHHHHHhcCCCccccHHHHHHHHHH
Confidence 78877644332 11 246788999988 55566554421 111 345778888888842 22222222
Q ss_pred hhcCCChhhHHHHHHHhhc
Q 005191 388 SFHRKSKPDWVNTLNNLKR 406 (709)
Q Consensus 388 ~L~~~~~~ew~~~L~~L~~ 406 (709)
.........+..+++.+..
T Consensus 245 a~~~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 245 SLQMDPEYRVRKFLALLRE 263 (272)
T ss_dssp HTTSCGGGHHHHHHHHHHH
T ss_pred HhhhchHHHHHHHHHHHHH
Confidence 2222334556666655543
No 34
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.46 E-value=2.4e-06 Score=90.81 Aligned_cols=197 Identities=13% Similarity=0.118 Sum_probs=111.7
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh--cccceEEEeeecccccccCCHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ--KFEGKYFMANVREESEKCGGLVHL 255 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f~~~~~v~~~~~~~~~~~~l~~l 255 (709)
|.....++|++..++.+..++..+.. ..+.|+|++|+||||+|+.+++.+.. .+...+...+.... .+...+
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~----~~~~~~ 106 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE----RGISIV 106 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC----CCHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc----cchHHH
Confidence 34457799999999999999875432 23889999999999999999987642 22222221111110 122222
Q ss_pred HHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEEEEcCchh-hhhhc-C
Q 005191 256 RNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRIIVTTRDKT-ILERY-G 331 (709)
Q Consensus 256 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrIIvTTR~~~-v~~~~-~ 331 (709)
.+........... ..... .....-..++-+|++|+++.. .....+...+.......++|++|.... +.... .
T Consensus 107 -~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 107 -REKVKNFARLTVS-KPSKH--DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp -TTHHHHHHHSCCC-CCCTT--HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred -HHHHHHHhhhccc-ccchh--hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 2222222110000 00000 001111235579999999642 333444443333345667777775442 21111 1
Q ss_pred cceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHh
Q 005191 332 THRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLG 386 (709)
Q Consensus 332 ~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la 386 (709)
....+.+.+++.++..+.+...+..... ....+..+.|++.++|+|..+..+.
T Consensus 183 R~~~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 183 QCSKFRFKALDASNAIDRLRFISEQENV--KCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2247899999999999998876632221 1224567889999999998655443
No 35
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.43 E-value=2.5e-06 Score=96.03 Aligned_cols=191 Identities=14% Similarity=0.136 Sum_probs=104.3
Q ss_pred CCCCCCccccchhhhHHHhhhhccC---------------CCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeee
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGL---------------PDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANV 242 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~---------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~ 242 (709)
|.....++|++..+++|.+++.... +..+.+.|+|++|+|||++|+.+++.+. + .+...+.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~--~~i~in~ 110 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--Y--DILEQNA 110 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--C--EEEEECT
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--C--CEEEEeC
Confidence 3445679999999999999986410 1347899999999999999999999862 1 1211111
Q ss_pred cccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHH--HHccCceEEEecCCCChh-----hhhhhhcCCCCCCCCe
Q 005191 243 REESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRD--RLQRMKVFIVLDDVNKYG-----QLEYFDGGLDRFGPGS 315 (709)
Q Consensus 243 ~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~--~L~~kr~LLVLDdv~~~~-----~~~~l~~~l~~~~~gs 315 (709)
... .. .......+....... .. ........+ ...+++.+|+||+++... .+..+...+.. .+.
T Consensus 111 s~~----~~-~~~~~~~i~~~~~~~-~~--~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~ 180 (516)
T 1sxj_A 111 SDV----RS-KTLLNAGVKNALDNM-SV--VGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TST 180 (516)
T ss_dssp TSC----CC-HHHHHHTGGGGTTBC-CS--TTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSS
T ss_pred CCc----ch-HHHHHHHHHHHhccc-cH--HHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCC
Confidence 111 11 112222222111100 00 000000000 113568899999996421 12333322221 233
Q ss_pred EEEEEcCchh---hhhhcCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHH
Q 005191 316 RIIVTTRDKT---ILERYGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQV 384 (709)
Q Consensus 316 rIIvTTR~~~---v~~~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~ 384 (709)
.||+++.+.. +.........+.+++++.++..+.+...+...... ...+....|++.++|.+-.+..
T Consensus 181 ~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~--i~~~~l~~la~~s~GdiR~~i~ 250 (516)
T 1sxj_A 181 PLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK--LDPNVIDRLIQTTRGDIRQVIN 250 (516)
T ss_dssp CEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHTTTCHHHHHH
T ss_pred CEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHH
Confidence 4555554321 22222234678999999999999887766432211 1124577889999996654433
No 36
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.43 E-value=5.2e-06 Score=88.81 Aligned_cols=203 Identities=13% Similarity=0.142 Sum_probs=111.2
Q ss_pred hhhhHHHHHHHHHhhhhcccCCCCCCCCccccchhhhHHHhhhhc----------cCCCceEEEEEccCCCchhHHHHHH
Q 005191 156 DAKLVKEITADILEKLEKLSAAISDSDGLIGLESHVEQVRSLLAI----------GLPDVRLVGIWGMGGIGKTTIAGVV 225 (709)
Q Consensus 156 e~~~i~~i~~~i~~~l~~~~~~~~~~~~~vGR~~el~~L~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v 225 (709)
+...++.+...+... .++..-..++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.+
T Consensus 63 ~~~~~~~i~~~i~~~-----~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 63 EPKMIELIMNEIMDH-----GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CHHHHHHHHHHTBCC-----SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH
T ss_pred ChHHHHHHHhhcccC-----CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH
Confidence 334444444444332 2334456799999999999887742 1123568899999999999999999
Q ss_pred HHHhhhcccceEEEeeecccccccCC-HHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh------
Q 005191 226 FNQFSQKFEGKYFMANVREESEKCGG-LVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY------ 298 (709)
Q Consensus 226 ~~~~~~~f~~~~~v~~~~~~~~~~~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~------ 298 (709)
++..... ++..+.........+ .... ....+......++.+|+||+++..
T Consensus 138 a~~~~~~----~~~i~~~~l~~~~~g~~~~~-------------------~~~~~~~a~~~~~~vl~iDEid~l~~~~~~ 194 (357)
T 3d8b_A 138 ASQSGAT----FFSISASSLTSKWVGEGEKM-------------------VRALFAVARCQQPAVIFIDEIDSLLSQRGD 194 (357)
T ss_dssp HHHTTCE----EEEEEGGGGCCSSTTHHHHH-------------------HHHHHHHHHHTCSEEEEEETHHHHTBC---
T ss_pred HHHcCCe----EEEEehHHhhccccchHHHH-------------------HHHHHHHHHhcCCeEEEEeCchhhhccCCC
Confidence 9875322 222222211111000 0000 111112222356789999999432
Q ss_pred -------hhhhhhhcCCC----CCCCCeEEEEEcCchhhhh-h--cCcceEEEecCCChHHHHHHhhhcccccCCCChhh
Q 005191 299 -------GQLEYFDGGLD----RFGPGSRIIVTTRDKTILE-R--YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDL 364 (709)
Q Consensus 299 -------~~~~~l~~~l~----~~~~gsrIIvTTR~~~v~~-~--~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~ 364 (709)
.....++..+. ....+..||.||....... . -.....+.++..+.++..+++...+...... ..
T Consensus 195 ~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~ 272 (357)
T 3d8b_A 195 GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LS 272 (357)
T ss_dssp ---CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CC
T ss_pred CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--cc
Confidence 11222222211 1134556666775542111 1 1233577899999999888887665222111 12
Q ss_pred HHHHHHHHHHhcC-CchHHHHHhhh
Q 005191 365 LKHSETAAHYAKG-NPLALQVLGSS 388 (709)
Q Consensus 365 ~~~~~~Iv~~~gG-lPLAL~~la~~ 388 (709)
.+....|++.+.| .|-.|..+...
T Consensus 273 ~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 273 EEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3457788888888 55566665443
No 37
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.42 E-value=5.1e-07 Score=99.48 Aligned_cols=184 Identities=12% Similarity=0.087 Sum_probs=106.0
Q ss_pred CCCcc-ccchhh--hHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccce--EEEeeecccccccCCHHHH
Q 005191 181 SDGLI-GLESHV--EQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGK--YFMANVREESEKCGGLVHL 255 (709)
Q Consensus 181 ~~~~v-GR~~el--~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~--~~v~~~~~~~~~~~~l~~l 255 (709)
.+.|+ |..... ..+........ ....+.|+|++|+||||||+.+++.+...++.. +++. ...+
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-----------~~~~ 171 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKF 171 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-----------HHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHH
Confidence 34566 655443 23333333222 267899999999999999999999876665332 2332 1123
Q ss_pred HHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh----hhhhhhcCCCC-CCCCeEEEEEcCchh-----
Q 005191 256 RNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG----QLEYFDGGLDR-FGPGSRIIVTTRDKT----- 325 (709)
Q Consensus 256 ~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~----~~~~l~~~l~~-~~~gsrIIvTTR~~~----- 325 (709)
...+...+... ....+.+.+..++.+|+|||++... .-+.+...+.. ...|..||+||.+..
T Consensus 172 ~~~~~~~~~~~--------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 172 LNDLVDSMKEG--------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHHHHHTT--------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHHHHHcc--------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 33444443221 1223444444467899999995422 22233322211 135678888887631
Q ss_pred ----hhhhcCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHh
Q 005191 326 ----ILERYGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLG 386 (709)
Q Consensus 326 ----v~~~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la 386 (709)
+...+....++.+++++.++-.+++.+.+...... ...+....|++.++|++--+.-+.
T Consensus 244 l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~--i~~e~l~~la~~~~gn~R~l~~~L 306 (440)
T 2z4s_A 244 FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_dssp CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHCCSCHHHHHHHH
T ss_pred HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHHH
Confidence 11222223578899999999999998776322111 112456778888999887655443
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.40 E-value=3.7e-06 Score=90.06 Aligned_cols=202 Identities=15% Similarity=0.083 Sum_probs=106.6
Q ss_pred CCCccccchhhhHHH---hhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHH
Q 005191 181 SDGLIGLESHVEQVR---SLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRN 257 (709)
Q Consensus 181 ~~~~vGR~~el~~L~---~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~ 257 (709)
.+.++|++...+.+. +.+..+....+.+.|+|++|+|||+||+.+++.+....+. +.+. ................
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIA-GSEIFSLEMSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEE-GGGGSCSSSCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-cccc-chhhhhcccchhHHHH
Confidence 567999999877644 4444443334789999999999999999999987543221 1111 1111111122233333
Q ss_pred HHHHHhcC---------------------CCC------CCCCCChhHHHHHHH---------ccC----ceEEEecCCCC
Q 005191 258 QVLSKLLG---------------------ENF------DIGTPKIPQYIRDRL---------QRM----KVFIVLDDVNK 297 (709)
Q Consensus 258 ~ll~~l~~---------------------~~~------~~~~~~~~~~l~~~L---------~~k----r~LLVLDdv~~ 297 (709)
+.+....+ ... .....+....+++.+ .++ +.+|+||+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 33332100 000 000000122222211 122 46999999965
Q ss_pred h--hhhhhhhcCCCCCCCCeEEEEEcCc------------h-hhhh-hcCcceEEEecCCChHHHHHHhhhcccccCCCC
Q 005191 298 Y--GQLEYFDGGLDRFGPGSRIIVTTRD------------K-TILE-RYGTHRIYEVEGLNCNEALRLFCSCAFKENHCP 361 (709)
Q Consensus 298 ~--~~~~~l~~~l~~~~~gsrIIvTTR~------------~-~v~~-~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~ 361 (709)
. +....+...+...... .++++|.. . .+.. .......+.+++++.++..+++...+.....
T Consensus 201 l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~-- 277 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV-- 277 (368)
T ss_dssp SBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC--
T ss_pred cChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC--
Confidence 3 3444444444332333 34444421 1 1111 1112245799999999999999877633221
Q ss_pred hhhHHHHHHHHHHhc-CCchHHHHHhh
Q 005191 362 EDLLKHSETAAHYAK-GNPLALQVLGS 387 (709)
Q Consensus 362 ~~~~~~~~~Iv~~~g-GlPLAL~~la~ 387 (709)
....+..+.+++.+. |.|-.+..+..
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~ll~ 304 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQLIT 304 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 123456788899998 88876655443
No 39
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.37 E-value=8.3e-06 Score=82.74 Aligned_cols=182 Identities=17% Similarity=0.155 Sum_probs=98.3
Q ss_pred CCCccccchhhhHHHhhhhc---c-------CCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccC
Q 005191 181 SDGLIGLESHVEQVRSLLAI---G-------LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCG 250 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~ 250 (709)
...++|.+...+.+.+++.. . ....+.+.|+|++|+|||++|+.+++.....| +.+. .........
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~~ 80 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVIG 80 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSST
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhcc
Confidence 35688888887777665431 1 12346688999999999999999998764322 1222 111111000
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh-----------------hhhhhhhcCCCC--C
Q 005191 251 GLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY-----------------GQLEYFDGGLDR--F 311 (709)
Q Consensus 251 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~-----------------~~~~~l~~~l~~--~ 311 (709)
+.. .. .....+.......+.+|+||+++.. ..+..++..+.. .
T Consensus 81 ~~~---~~---------------~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 81 GLG---AA---------------RVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp THH---HH---------------HHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred Chh---HH---------------HHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 000 00 0112222233446789999999753 112233322211 1
Q ss_pred CCCeEEEEEcCchhhhh-hc----CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCch-HHHHH
Q 005191 312 GPGSRIIVTTRDKTILE-RY----GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPL-ALQVL 385 (709)
Q Consensus 312 ~~gsrIIvTTR~~~v~~-~~----~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPL-AL~~l 385 (709)
..+..||.||....... .. .....+.++..+.++-.+++...+..... ..........+++.+.|.+- .|..+
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 23556777776543221 11 23367889999999999998877633221 11222234677888887654 44443
No 40
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=3e-06 Score=90.29 Aligned_cols=199 Identities=11% Similarity=0.075 Sum_probs=107.4
Q ss_pred CCCCCccccchhhhHHHhhh-hccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEee----------------
Q 005191 179 SDSDGLIGLESHVEQVRSLL-AIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMAN---------------- 241 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~---------------- 241 (709)
.....++|.+..++.+.+++ ..+. ... +.|+|++|+||||+|+.++..+.......+.+..
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 34467999999999999988 5332 234 8999999999999999999864322111111100
Q ss_pred -------ecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh--hhhhhhhcCCCCCC
Q 005191 242 -------VREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY--GQLEYFDGGLDRFG 312 (709)
Q Consensus 242 -------~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~ 312 (709)
... +..........++++..+.... .... .. .+. .+..++-++|||++... ...+.+...+....
T Consensus 89 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~~--~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 89 SSPYHLEITP-SDMGNNDRIVIQELLKEVAQME-QVDF--QD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ECSSEEEECC-C----CCHHHHHHHHHHHTTTT-C----------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred cccceEEecH-hhcCCcchHHHHHHHHHHHHhc-cccc--cc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 000 0000000001222222221100 0000 00 000 02346779999999753 23344443333334
Q ss_pred CCeEEEEEcCchh-hhhhc-CcceEEEecCCChHHHHHHhhhcccccCCCChhh-HHHHHHHHHHhcCCchHHHHHhh
Q 005191 313 PGSRIIVTTRDKT-ILERY-GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDL-LKHSETAAHYAKGNPLALQVLGS 387 (709)
Q Consensus 313 ~gsrIIvTTR~~~-v~~~~-~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~-~~~~~~Iv~~~gGlPLAL~~la~ 387 (709)
.+..+|++|.+.. +.... +....+++++++.++..+.+...+..... ... .+.+..|++.++|.+-.+..+..
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI--QLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--EECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5678888776542 22211 22368899999999999999877632221 111 35578899999999876655443
No 41
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.32 E-value=5.3e-06 Score=87.41 Aligned_cols=184 Identities=15% Similarity=0.090 Sum_probs=103.5
Q ss_pred CCCCCCccccchhhhHHHhhhh----------ccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccc
Q 005191 178 ISDSDGLIGLESHVEQVRSLLA----------IGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESE 247 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~ 247 (709)
+..-..++|.+..++.|.+.+. ......+-+.|+|++|+|||+||+.+++.....| +..+......
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~~ 89 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVS 89 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHHHT
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHHhh
Confidence 3445678999999999888772 1112246789999999999999999998754332 1111111000
Q ss_pred cc-CCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh-------------hhhhhhcC---CCC
Q 005191 248 KC-GGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG-------------QLEYFDGG---LDR 310 (709)
Q Consensus 248 ~~-~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~-------------~~~~l~~~---l~~ 310 (709)
.. ...... ....+......++.+|+||+++... ....++.. +..
T Consensus 90 ~~~g~~~~~-------------------~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 90 KWMGESEKL-------------------VKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp TTGGGHHHH-------------------HHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT
T ss_pred cccchHHHH-------------------HHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc
Confidence 00 000000 1112222224567899999996421 12222222 212
Q ss_pred CCCCeEEEEEcCchhhhhh---cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCC-chHHHHHh
Q 005191 311 FGPGSRIIVTTRDKTILER---YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGN-PLALQVLG 386 (709)
Q Consensus 311 ~~~gsrIIvTTR~~~v~~~---~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGl-PLAL~~la 386 (709)
...+..||.||........ -.....+.++..+.++-.+++..++...... ........|++.+.|. +-.|..+.
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV--LTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp SCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC--CCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred cCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2456667767765432211 0233577889999999999998876332211 1233567788888773 44444443
No 42
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.32 E-value=3.4e-06 Score=92.85 Aligned_cols=181 Identities=15% Similarity=0.241 Sum_probs=105.8
Q ss_pred CCCCCCccccchhh---hHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHH
Q 005191 178 ISDSDGLIGLESHV---EQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVH 254 (709)
Q Consensus 178 ~~~~~~~vGR~~el---~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~ 254 (709)
|.....++|.+..+ ..|...+..+ ..+.+.|+|++|+||||||+.+++.....|. -+. ... .+...
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~---a~~---~~~~~ 90 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVE---RIS---AVT---SGVKE 90 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEE---TTT---CCHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEE---ecc---CCHHH
Confidence 34457799999888 6777777654 3478999999999999999999987644331 111 110 22222
Q ss_pred HHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh--hhhhhhhcCCCCCCCCeEEE-EEcCchh--hhh-
Q 005191 255 LRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY--GQLEYFDGGLDRFGPGSRII-VTTRDKT--ILE- 328 (709)
Q Consensus 255 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~--~~~~~l~~~l~~~~~gsrII-vTTR~~~--v~~- 328 (709)
+ +.++... ......+++.+|+||+++.. .+.+.++..+.. ....+| .||.+.. +..
T Consensus 91 i-r~~~~~a---------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 91 I-REAIERA---------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp H-HHHHHHH---------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHH
T ss_pred H-HHHHHHH---------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHH
Confidence 2 1111111 01111356889999999753 233444444332 223344 3555542 111
Q ss_pred hcCcceEEEecCCChHHHHHHhhhcccccC-----CCChhhHHHHHHHHHHhcCCchHHHHHhh
Q 005191 329 RYGTHRIYEVEGLNCNEALRLFCSCAFKEN-----HCPEDLLKHSETAAHYAKGNPLALQVLGS 387 (709)
Q Consensus 329 ~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~~Iv~~~gGlPLAL~~la~ 387 (709)
......++.+++++.++..+++.+.+-... .......+..+.+++.++|++-.+..+..
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 112345889999999999999887663211 11123346678888999999876655443
No 43
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.28 E-value=5.4e-06 Score=86.46 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=87.1
Q ss_pred CccccchhhhHHHhhhhcc-------------CCCceEEEEEccCCCchhHHHHHHHHHhhhccc--ceEEEe-eecccc
Q 005191 183 GLIGLESHVEQVRSLLAIG-------------LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFE--GKYFMA-NVREES 246 (709)
Q Consensus 183 ~~vGR~~el~~L~~~L~~~-------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~~~v~-~~~~~~ 246 (709)
.++|.+...+.|.+.+... ......+.|+|++|+|||+||+.+++.+..... ...++. +.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 4788888888777655421 234567899999999999999999987644321 111222 111110
Q ss_pred cccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHc-cCceEEEecCCC-----------ChhhhhhhhcCCCCCCCC
Q 005191 247 EKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQ-RMKVFIVLDDVN-----------KYGQLEYFDGGLDRFGPG 314 (709)
Q Consensus 247 ~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~-~kr~LLVLDdv~-----------~~~~~~~l~~~l~~~~~g 314 (709)
.. . .......+...+. .++.+|+||+++ .......+...+.....+
T Consensus 112 ~~------------------~----~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~ 169 (309)
T 3syl_A 112 GQ------------------Y----IGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD 169 (309)
T ss_dssp CS------------------S----TTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT
T ss_pred hh------------------c----ccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC
Confidence 00 0 0001111222221 145699999997 333445555444444556
Q ss_pred eEEEEEcCchhhh------hhc--CcceEEEecCCChHHHHHHhhhcc
Q 005191 315 SRIIVTTRDKTIL------ERY--GTHRIYEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 315 srIIvTTR~~~v~------~~~--~~~~~~~L~~L~~~ea~~Lf~~~a 354 (709)
..||.||...... ... .....+.+++++.++-.+++...+
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 170 LVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp CEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHH
Confidence 7788887643211 000 123688999999999999987766
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.26 E-value=5.4e-06 Score=87.34 Aligned_cols=179 Identities=15% Similarity=0.112 Sum_probs=97.9
Q ss_pred CCCCcc-ccchh--hhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHH
Q 005191 180 DSDGLI-GLESH--VEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLR 256 (709)
Q Consensus 180 ~~~~~v-GR~~e--l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~ 256 (709)
..+.|+ |.... ...+..+..........+.|+|++|+||||||+.+++.....-...+++. . ..+.
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~----------~~~~ 77 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A----------DDFA 77 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H----------HHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H----------HHHH
Confidence 345666 54332 33344444433223567899999999999999999998754422233333 1 1122
Q ss_pred HHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh----hhhhhhcCCCC-CCCCeEEEEEcCchh------
Q 005191 257 NQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG----QLEYFDGGLDR-FGPGSRIIVTTRDKT------ 325 (709)
Q Consensus 257 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~----~~~~l~~~l~~-~~~gsrIIvTTR~~~------ 325 (709)
..+...+... ....+.+.+. ++.+|+|||++... ..+.+...+.. ...+..||+||....
T Consensus 78 ~~~~~~~~~~--------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l 148 (324)
T 1l8q_A 78 QAMVEHLKKG--------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGV 148 (324)
T ss_dssp HHHHHHHHHT--------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTS
T ss_pred HHHHHHHHcC--------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHh
Confidence 2333332110 1222233332 46799999996432 12222222110 124567888775431
Q ss_pred ---hhhhcCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHH
Q 005191 326 ---ILERYGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLAL 382 (709)
Q Consensus 326 ---v~~~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL 382 (709)
+...+....++++++ +.++..+++...+..... ....+..+.|++.+ |++-.+
T Consensus 149 ~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~--~l~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 149 SDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL--ELRKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp CHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHC-SSHHHH
T ss_pred hhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhC-CCHHHH
Confidence 112222236789999 999999999887632221 12235577788888 876543
No 45
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.24 E-value=1.2e-05 Score=83.49 Aligned_cols=184 Identities=16% Similarity=0.105 Sum_probs=101.2
Q ss_pred CCCCCCccccchhhhHHHhhhhcc----------CCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccc
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIG----------LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESE 247 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~ 247 (709)
+..-..++|.+..++.+.+.+... ....+.+.|+|++|+|||+||+.++......| +.+. ......
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~-~~~l~~ 92 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF---LNIS-AASLTS 92 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEE-STTTSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEee-HHHHhh
Confidence 344567999999999998876421 12356889999999999999999998763322 1111 111110
Q ss_pred cc-CCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh-------------hhhhhhc---CCCC
Q 005191 248 KC-GGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG-------------QLEYFDG---GLDR 310 (709)
Q Consensus 248 ~~-~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~-------------~~~~l~~---~l~~ 310 (709)
.. ...... ....+......++.+|+||+++... ....++. ....
T Consensus 93 ~~~~~~~~~-------------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 153 (297)
T 3b9p_A 93 KYVGDGEKL-------------------VRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPG 153 (297)
T ss_dssp SSCSCHHHH-------------------HHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-
T ss_pred cccchHHHH-------------------HHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccc
Confidence 00 000011 1111222224567899999995421 1111221 1111
Q ss_pred --CCCCeEEEEEcCchhhhh-hc--CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCch-HHHH
Q 005191 311 --FGPGSRIIVTTRDKTILE-RY--GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPL-ALQV 384 (709)
Q Consensus 311 --~~~gsrIIvTTR~~~v~~-~~--~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPL-AL~~ 384 (709)
.+.+..||.||....... .. .....+.++..+.++..+++...+...... ...+....+++.+.|.+- .|..
T Consensus 154 ~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 154 NPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp -----CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHH
Confidence 123456677776542111 10 123567788888888888887665322211 123456788889999875 5544
Q ss_pred Hh
Q 005191 385 LG 386 (709)
Q Consensus 385 la 386 (709)
+.
T Consensus 232 l~ 233 (297)
T 3b9p_A 232 LA 233 (297)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 46
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.22 E-value=3.2e-05 Score=85.21 Aligned_cols=186 Identities=14% Similarity=0.129 Sum_probs=104.7
Q ss_pred CCCCCCccccchhhhHHHhhhhc----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccc
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAI----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESE 247 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~ 247 (709)
+..-..++|.+...+.|.+.+.. .....+.+.|+|++|+|||+||+.+++.... ..|+. + ..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~-v---~~ 201 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFS-I---SS 201 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEE-E---CC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEE-E---eH
Confidence 34456799999988888876621 1123478899999999999999999997621 11222 1 00
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh-------------hhhhhhhcCCCC---C
Q 005191 248 KCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY-------------GQLEYFDGGLDR---F 311 (709)
Q Consensus 248 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~-------------~~~~~l~~~l~~---~ 311 (709)
.. +. ....+ .........+...-..++.+|+||+++.. .....++..+.. .
T Consensus 202 --~~---l~----~~~~g----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 268 (444)
T 2zan_A 202 --SD---LV----SKWLG----ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 268 (444)
T ss_dssp --C--------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC
T ss_pred --HH---HH----hhhcc----hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC
Confidence 00 10 11100 01111223333333457899999999753 122334444332 2
Q ss_pred CCCeEEEEEcCchhhhhh---cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCC-chHHHHHh
Q 005191 312 GPGSRIIVTTRDKTILER---YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGN-PLALQVLG 386 (709)
Q Consensus 312 ~~gsrIIvTTR~~~v~~~---~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGl-PLAL~~la 386 (709)
..+..||.||..+..... -.....+.++..+.++-.+++..++..... .........|++.+.|. +-.|..+.
T Consensus 269 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 269 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN--SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE--ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667777765432111 123457788888888888888777632211 11234567888888884 44444443
No 47
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.21 E-value=3.2e-05 Score=81.35 Aligned_cols=183 Identities=12% Similarity=0.108 Sum_probs=100.5
Q ss_pred CCCCccccchhhhHHHhhhhc----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccccc
Q 005191 180 DSDGLIGLESHVEQVRSLLAI----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKC 249 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~ 249 (709)
.-..++|.+...+.|.+.+.. .....+.+.|+|++|+|||+||+.+++.... ..++..........
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~~~- 85 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLVSK- 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSCCS-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHHhh-
Confidence 345688888887777765521 1123478899999999999999999997621 11111111111000
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCC-hhHHH-HHHHccCceEEEecCCCChh-------------hhhhhhcC---CCCC
Q 005191 250 GGLVHLRNQVLSKLLGENFDIGTPK-IPQYI-RDRLQRMKVFIVLDDVNKYG-------------QLEYFDGG---LDRF 311 (709)
Q Consensus 250 ~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l-~~~L~~kr~LLVLDdv~~~~-------------~~~~l~~~---l~~~ 311 (709)
. ....+ ....+ ...-..++.+|+||+++... ....++.. +...
T Consensus 86 -----------------~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 146 (322)
T 1xwi_A 86 -----------------W--LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 146 (322)
T ss_dssp -----------------S--CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC
T ss_pred -----------------h--hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc
Confidence 0 00011 11222 22224578899999997531 11222221 1112
Q ss_pred CCCeEEEEEcCchhhhh-h--cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCC-chHHHHHhh
Q 005191 312 GPGSRIIVTTRDKTILE-R--YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGN-PLALQVLGS 387 (709)
Q Consensus 312 ~~gsrIIvTTR~~~v~~-~--~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGl-PLAL~~la~ 387 (709)
..+..||.||..+.... . -.....+.++..+.++-.+++..+....... ........|++.+.|. +-.|..+..
T Consensus 147 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 147 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp CTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566666775542211 1 1234678899999999899887766322111 1234567888888886 434554443
No 48
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.21 E-value=5.2e-06 Score=79.09 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=41.9
Q ss_pred CCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 180 DSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
....++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3467999999999999988753 3456789999999999999999987644
No 49
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.18 E-value=1.8e-05 Score=84.50 Aligned_cols=183 Identities=15% Similarity=0.122 Sum_probs=101.5
Q ss_pred CCCCCccccchhhhHHHhhhhc----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccc
Q 005191 179 SDSDGLIGLESHVEQVRSLLAI----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEK 248 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~ 248 (709)
..-..++|.+..++.|.+.+.. .....+-+.|+|++|+|||+||+.+++.....| +.....
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~----- 118 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSS----- 118 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHH-----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHH-----
Confidence 3446689999998888877631 112245688999999999999999999864322 111111
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCCCChhHH-HHHHHccCceEEEecCCCChh-------------hhhhhhcCCC---CC
Q 005191 249 CGGLVHLRNQVLSKLLGENFDIGTPKIPQY-IRDRLQRMKVFIVLDDVNKYG-------------QLEYFDGGLD---RF 311 (709)
Q Consensus 249 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~-l~~~L~~kr~LLVLDdv~~~~-------------~~~~l~~~l~---~~ 311 (709)
.+ .... .. ........ +......++.+|+||+++... ....++..+. ..
T Consensus 119 -----~l----~~~~----~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 184 (355)
T 2qp9_X 119 -----DL----VSKW----MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND 184 (355)
T ss_dssp -----HH----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC--
T ss_pred -----HH----hhhh----cc-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc
Confidence 01 1000 00 00011222 222224578999999996432 1222322221 11
Q ss_pred CCCeEEEEEcCchhhhh-h--cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCC-chHHHHHh
Q 005191 312 GPGSRIIVTTRDKTILE-R--YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGN-PLALQVLG 386 (709)
Q Consensus 312 ~~gsrIIvTTR~~~v~~-~--~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGl-PLAL~~la 386 (709)
..+..||.||....... . -.....+.++..+.++-.+++..++...... ........|++.+.|. |-.|..+.
T Consensus 185 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV--LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34566666776542111 1 1234677899999999999988776332211 1134567888888884 44455444
No 50
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.17 E-value=2.4e-05 Score=84.64 Aligned_cols=185 Identities=16% Similarity=0.095 Sum_probs=101.5
Q ss_pred CCCCCCccccchhhhHHHhhhhc----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccc
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAI----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESE 247 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~ 247 (709)
+.....++|.+..++.|.+.+.. .....+.+.|+|++|+|||+||+.+++..... ++..+......
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~~ 186 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT----FFNISAASLTS 186 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE----EEEECSCCC--
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc----EEEeeHHHhhc
Confidence 34456799999999999887732 11224688999999999999999998875322 22221111110
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCCCCCCh-hHHHHHHHccCceEEEecCCCCh-------------hhhhhhhcCCC----
Q 005191 248 KCGGLVHLRNQVLSKLLGENFDIGTPKI-PQYIRDRLQRMKVFIVLDDVNKY-------------GQLEYFDGGLD---- 309 (709)
Q Consensus 248 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~-~~~l~~~L~~kr~LLVLDdv~~~-------------~~~~~l~~~l~---- 309 (709)
. .. + ..... ...+.......+.+|+||+++.. .....++..+.
T Consensus 187 ~------~~-------g------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 247 (389)
T 3vfd_A 187 K------YV-------G------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS 247 (389)
T ss_dssp ------------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-
T ss_pred c------cc-------c------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc
Confidence 0 00 0 00001 11122222346689999999643 01112221111
Q ss_pred CCCCCeEEEEEcCchhhhh-h--cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCch-HHHHH
Q 005191 310 RFGPGSRIIVTTRDKTILE-R--YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPL-ALQVL 385 (709)
Q Consensus 310 ~~~~gsrIIvTTR~~~v~~-~--~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPL-AL~~l 385 (709)
.......||.||....... . -.....+.++..+.++-.+++...+..... ....+....+++.+.|..- +|..+
T Consensus 248 ~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 248 AGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS--PLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp ----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC--CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 1123455666665532211 1 123356889999999999998876633221 1223456788888888554 55555
Q ss_pred hh
Q 005191 386 GS 387 (709)
Q Consensus 386 a~ 387 (709)
..
T Consensus 326 ~~ 327 (389)
T 3vfd_A 326 AK 327 (389)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 51
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.16 E-value=8.6e-06 Score=85.67 Aligned_cols=179 Identities=14% Similarity=0.114 Sum_probs=103.3
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHH
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRN 257 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~ 257 (709)
|.....++|.+..++.+.+++..+. ..+++.+.|++|+|||++|+.+++.+... .+.+. . +. .+.. ..+
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-~---~~--~~~~-~i~ 90 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-G---SD--CKID-FVR 90 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-T---TT--CCHH-HHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-c---cc--cCHH-HHH
Confidence 3445789999999999999988542 34678888999999999999999876322 12222 1 11 2222 222
Q ss_pred HHHHHh-cCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh---hhhhhhcCCCCCCCCeEEEEEcCchhh-hhhc-C
Q 005191 258 QVLSKL-LGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG---QLEYFDGGLDRFGPGSRIIVTTRDKTI-LERY-G 331 (709)
Q Consensus 258 ~ll~~l-~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~---~~~~l~~~l~~~~~gsrIIvTTR~~~v-~~~~-~ 331 (709)
..+... .... ..+++.+|++|+++... ..+.+...+.....+.++|+||....- .... .
T Consensus 91 ~~~~~~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 91 GPLTNFASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp THHHHHHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred HHHHHHHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 222221 1000 02367899999998654 344444433322356778888766431 1111 1
Q ss_pred cceEEEecCCChHHHHHHh-------hhcccccCCCChhhH-HHHHHHHHHhcCCchHHHH
Q 005191 332 THRIYEVEGLNCNEALRLF-------CSCAFKENHCPEDLL-KHSETAAHYAKGNPLALQV 384 (709)
Q Consensus 332 ~~~~~~L~~L~~~ea~~Lf-------~~~a~~~~~~~~~~~-~~~~~Iv~~~gGlPLAL~~ 384 (709)
...++++++++.++-.+++ ...+..... .... +....+++.++|.+-.+..
T Consensus 156 R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 156 RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI--AIADMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC--CBSCHHHHHHHHHHTCSCTTHHHH
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHhCCCCHHHHHH
Confidence 2257899999988743332 222211111 1112 5677888889888765433
No 52
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.11 E-value=4.5e-05 Score=80.68 Aligned_cols=181 Identities=10% Similarity=0.050 Sum_probs=99.7
Q ss_pred hhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCC
Q 005191 189 SHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENF 268 (709)
Q Consensus 189 ~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~ 268 (709)
+..+.+...+..+ .-.+.+.++|++|+|||++|+.+++.+....... ... .+.......+.........
T Consensus 9 ~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~---------~~~-c~~c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 9 PDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG---------HKS-CGHCRGCQLMQAGTHPDYY 77 (334)
T ss_dssp HHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT---------TBC-CSCSHHHHHHHHTCCTTEE
T ss_pred HHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC---------CCC-CCCCHHHHHHhcCCCCCEE
Confidence 3445555555533 2356789999999999999999998764322100 000 0000001111100000000
Q ss_pred CCC----CCC-hhH---HHHHHH-----ccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCchh-hhhhc-C
Q 005191 269 DIG----TPK-IPQ---YIRDRL-----QRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDKT-ILERY-G 331 (709)
Q Consensus 269 ~~~----~~~-~~~---~l~~~L-----~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~~-v~~~~-~ 331 (709)
... ... ..+ .+.+.+ .+++-++|+|+++. .+..+.++..+....+++.+|++|.+.. +.... +
T Consensus 78 ~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~S 157 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRS 157 (334)
T ss_dssp EECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT
T ss_pred EEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhh
Confidence 000 000 111 222222 24567999999975 3445556655554456677777776653 22221 2
Q ss_pred cceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhh
Q 005191 332 THRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGS 387 (709)
Q Consensus 332 ~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~ 387 (709)
....+++++++.++..+.+.... .. ..+.+..+++.++|.|..+..+..
T Consensus 158 Rc~~~~~~~~~~~~~~~~L~~~~----~~---~~~~~~~l~~~s~G~~r~a~~~l~ 206 (334)
T 1a5t_A 158 RCRLHYLAPPPEQYAVTWLSREV----TM---SQDALLAALRLSAGSPGAALALFQ 206 (334)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHC----CC---CHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred cceeeeCCCCCHHHHHHHHHHhc----CC---CHHHHHHHHHHcCCCHHHHHHHhc
Confidence 33678999999999999988765 11 134567889999999987655443
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.11 E-value=4.5e-05 Score=79.44 Aligned_cols=176 Identities=16% Similarity=0.190 Sum_probs=99.0
Q ss_pred CCCCccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccc
Q 005191 180 DSDGLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEK 248 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~ 248 (709)
.-..++|.+..+++|.+.+.. +-...+.+.|+|++|+|||+||+.++......| +.+.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~-------- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK-------- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC--------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE--------
Confidence 345688999888888877642 123456789999999999999999998764221 1111
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCCCC-hhHHHHHHHccCceEEEecCCCChh----------------hhhhhhcCCCC-
Q 005191 249 CGGLVHLRNQVLSKLLGENFDIGTPK-IPQYIRDRLQRMKVFIVLDDVNKYG----------------QLEYFDGGLDR- 310 (709)
Q Consensus 249 ~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~kr~LLVLDdv~~~~----------------~~~~l~~~l~~- 310 (709)
...+. ....+. ... ....+.......+.+|+||+++... ....++..+..
T Consensus 82 ---~~~l~----~~~~g~-----~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 82 ---GPELL----TMWFGE-----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp ---HHHHH----HHHHTT-----CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred ---hHHHH----hhhcCc-----hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 11122 222111 112 3333444445678999999997421 11222222211
Q ss_pred -CCCCeEEEEEcCchhhhh-h-c---CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchH
Q 005191 311 -FGPGSRIIVTTRDKTILE-R-Y---GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLA 381 (709)
Q Consensus 311 -~~~gsrIIvTTR~~~v~~-~-~---~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLA 381 (709)
...+..||.||....... . . .....+.++..+.++-.+++............. ....++..+.|.|-+
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~---~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 150 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV---DLEFLAKMTNGFSGA 223 (301)
T ss_dssp CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC---CHHHHHHTCSSCCHH
T ss_pred cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc---hHHHHHHHcCCCCHH
Confidence 134567777776553221 1 1 234678999999998888887665222111110 134455566666543
No 54
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.03 E-value=4.6e-05 Score=84.50 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=84.4
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcc-c----ceEEEe-eecccccccCCH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF-E----GKYFMA-NVREESEKCGGL 252 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~----~~~~v~-~~~~~~~~~~~l 252 (709)
...+.++||+.+++.+...+... ...-+.|+|++|+|||+||+.+++.+.... + ..-++. +..
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------- 245 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------- 245 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---------
Confidence 34567999999999999998753 234567999999999999999999864432 1 111221 110
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCchhhh-----
Q 005191 253 VHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDKTIL----- 327 (709)
Q Consensus 253 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~----- 327 (709)
.... +.........+...-..++.+|++| ...+....+.+.+. ....++|.+|......
T Consensus 246 --------~~~~----g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 --------TKYR----GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred --------cccc----chHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 0000 0001113333333334568899999 23333334444443 2345666666554311
Q ss_pred -hh-cCcceEEEecCCChHHHHHHhhhcc
Q 005191 328 -ER-YGTHRIYEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 328 -~~-~~~~~~~~L~~L~~~ea~~Lf~~~a 354 (709)
.. .....++.+++++.++..+++....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11 1122468999999999999987654
No 55
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.02 E-value=1.8e-05 Score=94.51 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=42.2
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...+.++||+.+++.+...|... ..+.+.|+|++|+|||+||+.+++.+..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 34567999999999999998753 2345689999999999999999998744
No 56
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=8.7e-05 Score=78.60 Aligned_cols=184 Identities=14% Similarity=0.192 Sum_probs=103.5
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc-ccceEEEeeecccccccCCHHHHHH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK-FEGKYFMANVREESEKCGGLVHLRN 257 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~v~~~~~~~~~~~~l~~l~~ 257 (709)
..-..++|.+..++.|...+..+ +...+.++|++|+||||+|+.++..+... +...+.-.+. +.. .+...+.
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~---~~~-~~~~~ir- 94 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA---SDD-RGIDVVR- 94 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT---TSC-CSHHHHH-
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC---ccc-ccHHHHH-
Confidence 34456889988888888888754 32238999999999999999999876432 2111111111 110 1222221
Q ss_pred HHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCchh-hhhh-cCcc
Q 005191 258 QVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDKT-ILER-YGTH 333 (709)
Q Consensus 258 ~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~~-v~~~-~~~~ 333 (709)
..+..+..... .+.+.+-++|+|+++. .+..+.+...+.......++|++|.... +... .+..
T Consensus 95 ~~i~~~~~~~~-------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 95 NQIKDFASTRQ-------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp THHHHHHHBCC-------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHHhhcc-------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 11111110000 0112367899999964 3333444433333345667777765442 1111 1122
Q ss_pred eEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHH
Q 005191 334 RIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQV 384 (709)
Q Consensus 334 ~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~ 384 (709)
..+.+.+++.++..+.+...+-.... .-..+..+.+++.++|.+--+..
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~--~i~~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKL--KLSPNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC--CBCHHHHHHHHHHHTTCHHHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 47899999999988888765521111 12234577889999998875433
No 57
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.96 E-value=0.00026 Score=74.75 Aligned_cols=256 Identities=15% Similarity=0.148 Sum_probs=135.5
Q ss_pred CCCCccccchhhhHHHhhhhcc---CCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHH
Q 005191 180 DSDGLIGLESHVEQVRSLLAIG---LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLR 256 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~ 256 (709)
.-..++|.+..++.+...+..+ ......+.|+|++|+||||||+.++..+...+. .. .+... .....+
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~-sg~~~---~~~~~l- 93 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VT-SGPVL---VKQGDM- 93 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EE-ETTTC---CSHHHH-
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EE-echHh---cCHHHH-
Confidence 3456889888788777766532 223467899999999999999999997643221 11 00000 000111
Q ss_pred HHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh--hhhhhhhcCCCCC--------C----------CCeE
Q 005191 257 NQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY--GQLEYFDGGLDRF--------G----------PGSR 316 (709)
Q Consensus 257 ~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~--~~~~~l~~~l~~~--------~----------~gsr 316 (709)
..+ ...+ .++.++++|++... ...+.+...+... + +...
T Consensus 94 ~~~--------------------~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 94 AAI--------------------LTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp HHH--------------------HHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred HHH--------------------HHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 011 1111 23457778887532 2222222111100 0 1122
Q ss_pred EE-EEcCchhhhhhc--CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHHhhhhc---
Q 005191 317 II-VTTRDKTILERY--GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVLGSSFH--- 390 (709)
Q Consensus 317 II-vTTR~~~v~~~~--~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~la~~L~--- 390 (709)
++ .|++...+.... .......+++.+.++-.+++.+.+-... .....+.+..|++.+.|.|-.+..+...+.
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 32 344433222111 1224678999999999999987763211 123346688999999999976544433221
Q ss_pred ---CC---ChhhHHHHHHHhhcCCCCcHHhHHHHhhcCCCHHHHHHHHhccc-ccc-CcchhHHHHHHhcCCchHHHHHH
Q 005191 391 ---RK---SKPDWVNTLNNLKRISDSDIYGVLKIGYDELSWEEKNLFLDIAC-FFN-GDDREHVMWILNDDYYSVQYGLN 462 (709)
Q Consensus 391 ---~~---~~~ew~~~L~~L~~~~~~~i~~~L~~Sy~~L~~~~k~~fl~lA~-Fp~-~~~~~~l~~l~~~~g~~~~~~l~ 462 (709)
+. +.+..+..++.+. ..-..|+...+..+..++- |.. +...+.+......+....++..+
T Consensus 231 ~~~~~~~It~~~v~~al~~~~------------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~ 298 (334)
T 1in4_A 231 TVVKADRINTDIVLKTMEVLN------------IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYE 298 (334)
T ss_dssp HHHTCSSBCHHHHHHHHHHHT------------CCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTH
T ss_pred HHcCCCCcCHHHHHHHHHHhC------------CCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHH
Confidence 11 2233333333321 1113566666565554432 322 23556666666554333444444
Q ss_pred -HHHhCCCeEEe-CCEEEE
Q 005191 463 -VLVNKSLIKIS-YNKLQM 479 (709)
Q Consensus 463 -~L~~rsLI~~~-~~~~~m 479 (709)
.|...++|+.. .|+.-.
T Consensus 299 ~~l~~~g~i~~~~~gr~~~ 317 (334)
T 1in4_A 299 PYLLQAGFLARTPRGRIVT 317 (334)
T ss_dssp HHHHHTTSEEEETTEEEEC
T ss_pred HHHHHcCCeecccccHHhh
Confidence 79999999988 555543
No 58
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.88 E-value=7.7e-05 Score=82.92 Aligned_cols=180 Identities=16% Similarity=0.192 Sum_probs=100.0
Q ss_pred CCCccccchhhhHHHhhhhcc-----------CCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccccc
Q 005191 181 SDGLIGLESHVEQVRSLLAIG-----------LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKC 249 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~ 249 (709)
...++|.+..+++|.+++... ....+-+.|+|++|+|||+||+.+++..... ++..+........
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~----fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE----EEEEEHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC----EEEEEchHhhhhh
Confidence 356899999999998877532 2345678999999999999999998875322 2222111111100
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh-------------hhhhhhhcCCC--CCCCC
Q 005191 250 GGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY-------------GQLEYFDGGLD--RFGPG 314 (709)
Q Consensus 250 ~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~-------------~~~~~l~~~l~--~~~~g 314 (709)
.+ .... .....+.....+++.+|+||+++.. .....++..+. ....+
T Consensus 279 ~g--~~~~----------------~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 279 AG--ESES----------------NLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp TT--HHHH----------------HHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred cc--hhHH----------------HHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 00 0000 0222333344567889999999421 11122222221 11345
Q ss_pred eEEEEEcCchhh-hhh----cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCC-chHHHHH
Q 005191 315 SRIIVTTRDKTI-LER----YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGN-PLALQVL 385 (709)
Q Consensus 315 srIIvTTR~~~v-~~~----~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGl-PLAL~~l 385 (709)
..||.||..... ... ......+.++..+.++-.+++..++.......+ ....++++.+.|. +-.|..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCCcHHHHHHH
Confidence 566767765532 111 123457899999999999999877632211111 1135566666664 4444443
No 59
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.88 E-value=0.00012 Score=78.43 Aligned_cols=173 Identities=19% Similarity=0.232 Sum_probs=99.3
Q ss_pred CCCccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccccc
Q 005191 181 SDGLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKC 249 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~ 249 (709)
-..+.|.++..++|.+.+.. +-..++-+.++|++|.|||.||+++++.....| +...........
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~ 222 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKY 222 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhccc
Confidence 35688899888888776532 223467789999999999999999999865443 222122211110
Q ss_pred CC-HHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh----------------hhhhhhcCCCC--
Q 005191 250 GG-LVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG----------------QLEYFDGGLDR-- 310 (709)
Q Consensus 250 ~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~----------------~~~~l~~~l~~-- 310 (709)
.+ -....+ ..+...-...+++|++|+++... .+..++..+..
T Consensus 223 vGese~~vr-------------------~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 223 IGEGSRMVR-------------------ELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp TTHHHHHHH-------------------HHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred cchHHHHHH-------------------HHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 11 111111 11222224578999999996321 12223322221
Q ss_pred CCCCeEEEEEcCchhhhh-----hcCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 311 FGPGSRIIVTTRDKTILE-----RYGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 311 ~~~gsrIIvTTR~~~v~~-----~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
...+..||.||..+.... ....+..+.++..+.++-.++|..+.-+..... .. ....|++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~-dv--dl~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTR-GI--NLRKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCS-SC--CHHHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCc-cC--CHHHHHHHCCCCC
Confidence 134556677776553321 123457889999999988898876653222111 11 1467777887754
No 60
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.86 E-value=2.3e-05 Score=72.20 Aligned_cols=47 Identities=26% Similarity=0.184 Sum_probs=37.1
Q ss_pred CccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 183 GLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 183 ~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.++|+...++++.+.+..-.....-|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999998886433334557899999999999999998864
No 61
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.83 E-value=7.4e-05 Score=77.55 Aligned_cols=48 Identities=23% Similarity=0.182 Sum_probs=37.5
Q ss_pred CCccccchhhhHHHhhhhc------------cCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 182 DGLIGLESHVEQVRSLLAI------------GLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..++|.+..++.+...+.. .......+.|+|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3588999888888877653 01234568899999999999999999876
No 62
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.81 E-value=7.7e-05 Score=75.54 Aligned_cols=180 Identities=15% Similarity=0.123 Sum_probs=92.7
Q ss_pred CCCCCccccchhhhHHHhhhhc---c-------CCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccc
Q 005191 179 SDSDGLIGLESHVEQVRSLLAI---G-------LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEK 248 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~ 248 (709)
.....++|.+...+++.+.+.. . ....+-+.|+|++|+||||||+.+++.....| +.+. .......
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~~ 84 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVEM 84 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTTS
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHHH
Confidence 3456788988877777665431 0 11234588999999999999999998753222 2222 1111000
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCCCC-hhHHHHHHHccCceEEEecCCCCh----------------hhhhhhhcCCCC-
Q 005191 249 CGGLVHLRNQVLSKLLGENFDIGTPK-IPQYIRDRLQRMKVFIVLDDVNKY----------------GQLEYFDGGLDR- 310 (709)
Q Consensus 249 ~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~L~~kr~LLVLDdv~~~----------------~~~~~l~~~l~~- 310 (709)
... .... ....+.......+.++++|+++.. .....++..+..
T Consensus 85 ------------------~~~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (257)
T 1lv7_A 85 ------------------FVG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF 145 (257)
T ss_dssp ------------------CCC-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC
T ss_pred ------------------hhh-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc
Confidence 000 0000 122222333446789999998321 112222221111
Q ss_pred -CCCCeEEEEEcCchhhh-hhc----CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcC-CchHHH
Q 005191 311 -FGPGSRIIVTTRDKTIL-ERY----GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKG-NPLALQ 383 (709)
Q Consensus 311 -~~~gsrIIvTTR~~~v~-~~~----~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gG-lPLAL~ 383 (709)
...+..||.||...... ... .....+.++..+.++-.+++..+.-.....++ .....++..+.| ++--|.
T Consensus 146 ~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 146 EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHH
T ss_pred ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHH
Confidence 12455677777655322 111 12457788888888877777665422111111 113445666667 554444
Q ss_pred H
Q 005191 384 V 384 (709)
Q Consensus 384 ~ 384 (709)
.
T Consensus 223 ~ 223 (257)
T 1lv7_A 223 N 223 (257)
T ss_dssp H
T ss_pred H
Confidence 3
No 63
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.73 E-value=4.4e-05 Score=77.81 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=83.8
Q ss_pred CCCCCccccchhhhHHHhhhhc----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccc
Q 005191 179 SDSDGLIGLESHVEQVRSLLAI----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEK 248 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~ 248 (709)
.....++|.+..++.+.+.+.. +....+-+.|+|++|+|||+||+.+++.....|-. +. ......
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v~-~~~~~~- 82 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MG-GSSFIE- 82 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CC-SCTTTT-
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ec-hHHHHH-
Confidence 3456799999988888876541 11123447899999999999999999876433211 11 000000
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh-----------------hhhhhhcCCCCC
Q 005191 249 CGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG-----------------QLEYFDGGLDRF 311 (709)
Q Consensus 249 ~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~-----------------~~~~l~~~l~~~ 311 (709)
...+ .........+......++.+|+||+++... .+..++..+...
T Consensus 83 -------------~~~~----~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (268)
T 2r62_A 83 -------------MFVG----LGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF 145 (268)
T ss_dssp -------------SCSS----SCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS
T ss_pred -------------hhcc----hHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc
Confidence 0000 011112222333334567899999995421 123343333221
Q ss_pred ---CCCeEEEEEcCchhhhh-hc----CcceEEEecCCChHHHHHHhhhcc
Q 005191 312 ---GPGSRIIVTTRDKTILE-RY----GTHRIYEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 312 ---~~gsrIIvTTR~~~v~~-~~----~~~~~~~L~~L~~~ea~~Lf~~~a 354 (709)
.....||.||....... .. .....+.++..+.++-.+++...+
T Consensus 146 ~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 146 GSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred ccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 12245666776553211 11 123456777788777777776554
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.73 E-value=0.0002 Score=84.42 Aligned_cols=149 Identities=13% Similarity=0.134 Sum_probs=85.7
Q ss_pred CCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcc------cceEEEeeecccccccCCH
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF------EGKYFMANVREESEKCGGL 252 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~v~~~~~~~~~~~~l 252 (709)
...+.+|||+.+++.+...|... ...-+.|+|++|+|||++|+.+++.+.... ...++..+.
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------- 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------- 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----------
Confidence 34567999999999999998753 234578999999999999999999864321 111221110
Q ss_pred HHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCchhhh-----
Q 005191 253 VHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDKTIL----- 327 (709)
Q Consensus 253 ~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~----- 327 (709)
+....+.........+......++.+|++| ...+....+.+.+. ....++|.||......
T Consensus 245 -----------g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 -----------GTKYRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -----------cccccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 000000111113344444445678999999 22333334444443 2345677666554311
Q ss_pred -hhc-CcceEEEecCCChHHHHHHhhhcc
Q 005191 328 -ERY-GTHRIYEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 328 -~~~-~~~~~~~L~~L~~~ea~~Lf~~~a 354 (709)
... .....+.+++++.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 100 122568999999999999987554
No 65
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.72 E-value=0.00014 Score=85.73 Aligned_cols=151 Identities=16% Similarity=0.183 Sum_probs=87.4
Q ss_pred CCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc------ccceEEEeeecccccccCCHH
Q 005191 180 DSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK------FEGKYFMANVREESEKCGGLV 253 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~v~~~~~~~~~~~~l~ 253 (709)
..+.++||+.+++.+.+.|... ...-+.|+|++|+|||++|+.+++.+... ....++........
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~------- 254 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL------- 254 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------
T ss_pred CCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh-------
Confidence 4467999999999999998754 34557899999999999999999876432 12233322111110
Q ss_pred HHHHHHHHHhcCCCCCCCCCChhHHHH---HHH-ccCceEEEecCCCCh----------hh-hhhhhcCCCCCCCCeEEE
Q 005191 254 HLRNQVLSKLLGENFDIGTPKIPQYIR---DRL-QRMKVFIVLDDVNKY----------GQ-LEYFDGGLDRFGPGSRII 318 (709)
Q Consensus 254 ~l~~~ll~~l~~~~~~~~~~~~~~~l~---~~L-~~kr~LLVLDdv~~~----------~~-~~~l~~~l~~~~~gsrII 318 (709)
.+.. ...+....++ +.+ ..++.+|++|+++.. .. ...+...+. ..+..+|
T Consensus 255 ----------~~~~---~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I 319 (758)
T 1r6b_X 255 ----------AGTK---YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVI 319 (758)
T ss_dssp ----------CCCC---CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEE
T ss_pred ----------cccc---ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEE
Confidence 0000 0001112222 222 235789999999754 11 222333333 2345666
Q ss_pred EEcCchhhhhh-------cCcceEEEecCCChHHHHHHhhhcc
Q 005191 319 VTTRDKTILER-------YGTHRIYEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 319 vTTR~~~v~~~-------~~~~~~~~L~~L~~~ea~~Lf~~~a 354 (709)
.+|........ ......+.+++++.++..+++....
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 66654432111 1122468899999999888886544
No 66
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00069 Score=73.72 Aligned_cols=173 Identities=21% Similarity=0.255 Sum_probs=98.6
Q ss_pred CCCccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccccc
Q 005191 181 SDGLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKC 249 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~ 249 (709)
-..+.|.+...++|.+.+.. +-..++-|.++|++|+|||.||+++++.....| +...........
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhcccc
Confidence 45678899888888776532 223468899999999999999999999865432 222222221110
Q ss_pred CC-HHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh----------------hhhhhhcCCC--C
Q 005191 250 GG-LVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG----------------QLEYFDGGLD--R 310 (709)
Q Consensus 250 ~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~----------------~~~~l~~~l~--~ 310 (709)
.+ ..... ...+...-...+++|++|+++... .+..++..+. .
T Consensus 256 ~Gese~~i-------------------r~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 256 IGESARII-------------------REMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp SSHHHHHH-------------------HHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred chHHHHHH-------------------HHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 11 01111 111222234578999999996310 1222332222 1
Q ss_pred CCCCeEEEEEcCchhhhhh-----cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 311 FGPGSRIIVTTRDKTILER-----YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 311 ~~~gsrIIvTTR~~~v~~~-----~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
...+..||.||..+..+.. ...+..+.++..+.++-.++|..+..+....... ....+++.+.|.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~---dl~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF---DFEAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC---CHHHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc---CHHHHHHhCCCCC
Confidence 1245567777765543221 1245678898888888888887665322211111 1456777777754
No 67
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.69 E-value=0.00011 Score=71.48 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=39.8
Q ss_pred CCCCccccch----hhhHHHhhhhccCCC--ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 180 DSDGLIGLES----HVEQVRSLLAIGLPD--VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 180 ~~~~~vGR~~----el~~L~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
..+.|++.+. .++.+.+++...... .+.+.|+|++|+|||+||+.+++....+....+++.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3456776553 334444555432221 278899999999999999999998765544455554
No 68
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.0012 Score=71.67 Aligned_cols=172 Identities=16% Similarity=0.179 Sum_probs=98.1
Q ss_pred CCccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccC
Q 005191 182 DGLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCG 250 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~ 250 (709)
..+.|.++..++|.+.+.. +-..++-|.++|++|+|||.||+++++.....| +............
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcccC
Confidence 5688999888888775431 223478899999999999999999999865443 2221222111101
Q ss_pred C-HHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh----------------hhhhhhcCCCC--C
Q 005191 251 G-LVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG----------------QLEYFDGGLDR--F 311 (709)
Q Consensus 251 ~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~----------------~~~~l~~~l~~--~ 311 (709)
+ -.... ...+...-...+++|++|+++... ....++..+.. .
T Consensus 285 Gesek~i-------------------r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 285 GEGARMV-------------------RELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp SHHHHHH-------------------HHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred CHHHHHH-------------------HHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 1 01111 112222234578999999996321 11122222211 1
Q ss_pred CCCeEEEEEcCchhhhh-----hcCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 312 GPGSRIIVTTRDKTILE-----RYGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 312 ~~gsrIIvTTR~~~v~~-----~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
..+..||.||.....+. ....+..+.++..+.++-.++|..+.-+..... .. ....|++.|.|.-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~-dv--dl~~LA~~T~GfS 415 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVER-GI--RWELISRLCPNST 415 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCS-SC--CHHHHHHHCCSCC
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCC-CC--CHHHHHHHCCCCC
Confidence 34556677775553221 113457889999999988888876663221111 11 1456777787753
No 69
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00043 Score=75.19 Aligned_cols=173 Identities=20% Similarity=0.212 Sum_probs=92.3
Q ss_pred CCCccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccccc
Q 005191 181 SDGLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKC 249 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~ 249 (709)
-..+.|.+...++|.+.+.. +-..++-+.++|++|+|||+||+++++.....| +...........
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~----~~v~~~~l~~~~ 246 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF----IRVNGSEFVHKY 246 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecchhhccc
Confidence 35688999888888776532 223467899999999999999999999865432 222222211110
Q ss_pred CC-HHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh------------h----hhhhhhcCCC--C
Q 005191 250 GG-LVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY------------G----QLEYFDGGLD--R 310 (709)
Q Consensus 250 ~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~------------~----~~~~l~~~l~--~ 310 (709)
.+ .....+ ..+...-...++++++|+++.. . .+..++..+. .
T Consensus 247 ~Ge~e~~ir-------------------~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 247 LGEGPRMVR-------------------DVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp CSHHHHHHH-------------------HHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred cchhHHHHH-------------------HHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 11 111111 1222223457899999998421 0 1222322221 1
Q ss_pred CCCCeEEEEEcCchhhhh-----hcCcceEEEecCCChHH-HHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 311 FGPGSRIIVTTRDKTILE-----RYGTHRIYEVEGLNCNE-ALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 311 ~~~gsrIIvTTR~~~v~~-----~~~~~~~~~L~~L~~~e-a~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
...+..||.||..+.... ....+..++++.++..+ -.++|..+.-+....++. ....+++.+.|.-
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~---dl~~lA~~t~G~s 379 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA---DLDSLIIRNDSLS 379 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC---CHHHHHHHTTTCC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc---CHHHHHHHCCCCC
Confidence 134566777776553221 11234667887665544 455555444221111111 1466777777753
No 70
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.66 E-value=7.3e-05 Score=71.31 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...+.|+|++|+||||||+.++..+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999875
No 71
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.00064 Score=73.91 Aligned_cols=173 Identities=14% Similarity=0.170 Sum_probs=98.2
Q ss_pred CCCCccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccc
Q 005191 180 DSDGLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEK 248 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~ 248 (709)
.-..+.|.+...++|.+.+.. +-..++-|.++|++|+|||.||++++......| +..........
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~~ 254 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLVQM 254 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCSS
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhhhc
Confidence 346788999888888775421 223467899999999999999999999864432 22222222111
Q ss_pred cCC-HHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh-------h---------hhhhhhcCCCCC
Q 005191 249 CGG-LVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY-------G---------QLEYFDGGLDRF 311 (709)
Q Consensus 249 ~~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~-------~---------~~~~l~~~l~~~ 311 (709)
..+ -....+.+ +...-...+++|++|+++.. . .+..++..+...
T Consensus 255 ~vGese~~ir~l-------------------F~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 255 YIGEGAKLVRDA-------------------FALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp CSSHHHHHHHHH-------------------HHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred ccchHHHHHHHH-------------------HHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 111 11111111 12222357899999998521 0 112233333222
Q ss_pred --CCCeEEEEEcCchhhhh-h----cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCC
Q 005191 312 --GPGSRIIVTTRDKTILE-R----YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGN 378 (709)
Q Consensus 312 --~~gsrIIvTTR~~~v~~-~----~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGl 378 (709)
..+..||.||..+..+. . ...+..+.++..+.++-.++|..+.-+-..... . ....|++.+.|.
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d-v--dl~~lA~~t~G~ 386 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDD-I--NWQELARSTDEF 386 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSC-C--CHHHHHHHCSSC
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCc-C--CHHHHHHhCCCC
Confidence 23456676776654322 1 134578899988988888888766532221111 1 146677777775
No 72
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.65 E-value=0.00021 Score=74.45 Aligned_cols=145 Identities=11% Similarity=0.025 Sum_probs=88.4
Q ss_pred cchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhh---hcccceEEEeeecccccccCCHHHHHHHHHHHh
Q 005191 187 LESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFS---QKFEGKYFMANVREESEKCGGLVHLRNQVLSKL 263 (709)
Q Consensus 187 R~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l 263 (709)
-++.++.|.+.+..+. .+.+.++|++|+||||+|..+++... ...+....+.. .....++..+ +++....
T Consensus 2 ~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~----~~~~~~id~i-r~li~~~ 74 (305)
T 2gno_A 2 AKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP----EGENIGIDDI-RTIKDFL 74 (305)
T ss_dssp --CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECC----SSSCBCHHHH-HHHHHHH
T ss_pred hHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcC----CcCCCCHHHH-HHHHHHH
Confidence 3455667777776543 67899999999999999999987531 12233333331 1101222222 2343333
Q ss_pred cCCCCCCCCCChhHHHHHHHccCceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCch-hhhhhcCcceEEEecC
Q 005191 264 LGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDK-TILERYGTHRIYEVEG 340 (709)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~-~v~~~~~~~~~~~L~~ 340 (709)
..... .+++-++|+|+++. .+..+.++..+....+.+.+|++|.++ .+.+..... ++++++
T Consensus 75 ~~~p~---------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 75 NYSPE---------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp TSCCS---------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred hhccc---------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 21110 23466899999974 445566666555445677877776554 344433334 899999
Q ss_pred CChHHHHHHhhhcc
Q 005191 341 LNCNEALRLFCSCA 354 (709)
Q Consensus 341 L~~~ea~~Lf~~~a 354 (709)
++.++..+.+.+..
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999987765
No 73
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.63 E-value=0.00032 Score=72.92 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=38.6
Q ss_pred CccccchhhhHHHhhhhccC-------CCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 183 GLIGLESHVEQVRSLLAIGL-------PDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 183 ~~vGR~~el~~L~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
.++|.+..++.+...+.... .....+.|+|++|+|||++|+.+++....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 58899988888888776421 11358999999999999999999997644
No 74
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.59 E-value=0.00019 Score=74.75 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=39.0
Q ss_pred CCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 182 DGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+.++|+...+.++.+.+.........|.|+|++|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 458999999999988887533344567899999999999999998854
No 75
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.54 E-value=0.0008 Score=74.24 Aligned_cols=174 Identities=14% Similarity=0.156 Sum_probs=95.1
Q ss_pred CCCccccchhhhHHHhhhhc--c--------CCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccC
Q 005191 181 SDGLIGLESHVEQVRSLLAI--G--------LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCG 250 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~ 250 (709)
...++|.++.++++.+.... . ..-.+-+.|+|++|+|||+||+.++......| +............
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~~~~~ 90 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFVELFV 90 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTTTCCT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHHHHHh
Confidence 35688888877777665431 0 11234588999999999999999998753322 2111111111100
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh----------------hhhhhhhcCCCC--CC
Q 005191 251 GLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY----------------GQLEYFDGGLDR--FG 312 (709)
Q Consensus 251 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~----------------~~~~~l~~~l~~--~~ 312 (709)
+.. .......+.......+.+|+||+++.. ..+..++..+.. ..
T Consensus 91 g~~------------------~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 91 GVG------------------AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp THH------------------HHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ccc------------------HHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 000 000222334444567899999999532 122333322211 12
Q ss_pred CCeEEEEEcCchhhhh-h-c---CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 313 PGSRIIVTTRDKTILE-R-Y---GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 313 ~gsrIIvTTR~~~v~~-~-~---~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
.+..||.||..+..+. . . .....+.++..+.++-.+++..++-.....++. ....+++.+.|+.
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 4567777776664332 1 1 233578888888888778876655222111111 1345777788876
No 76
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.51 E-value=0.0019 Score=71.23 Aligned_cols=50 Identities=26% Similarity=0.313 Sum_probs=38.5
Q ss_pred CCCccccchhhhHHHhhhh---ccCCCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 181 SDGLIGLESHVEQVRSLLA---IGLPDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...++|.+...+.+..++. .+....+-+.++|++|+|||+||+.+++.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 4779999988776655443 3333346788999999999999999998764
No 77
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.49 E-value=0.00038 Score=70.75 Aligned_cols=49 Identities=29% Similarity=0.230 Sum_probs=35.9
Q ss_pred CCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 182 DGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
..++|.+..+..+.+.+.........+.|+|++|+|||+||+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4589999999988877654222345678999999999999999998654
No 78
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.0018 Score=69.67 Aligned_cols=173 Identities=20% Similarity=0.229 Sum_probs=97.1
Q ss_pred CCCccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccccc
Q 005191 181 SDGLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKC 249 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~ 249 (709)
-..+.|.++..++|.+.+.. +-...+-|.++|++|.|||.||++++......| +.....+.....
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk~ 256 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQKY 256 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCSS
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhcc
Confidence 35677888888888776531 223467899999999999999999999865443 222222211111
Q ss_pred CC-HHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh----------------hhhhhhcCCC--C
Q 005191 250 GG-LVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG----------------QLEYFDGGLD--R 310 (709)
Q Consensus 250 ~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~----------------~~~~l~~~l~--~ 310 (709)
.+ .....+. .+...-...+++|++|+++... .+..++..+. .
T Consensus 257 vGesek~ir~-------------------lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 257 LGDGPRLCRQ-------------------IFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp SSHHHHHHHH-------------------HHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred CchHHHHHHH-------------------HHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 11 1111111 1222224578999999986310 1122322221 1
Q ss_pred CCCCeEEEEEcCchhhhh-hc----CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 311 FGPGSRIIVTTRDKTILE-RY----GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 311 ~~~gsrIIvTTR~~~v~~-~~----~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
...+..||.||.....+. .+ ..+..+.++..+.++-.++|..+.-+...... . ....|++.+.|.-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~d-v--dl~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSED-V--NLETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSC-C--CHHHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCc-C--CHHHHHHhCCCCC
Confidence 134556777776554332 11 23467888888888888888776632221111 0 1456777777653
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.37 E-value=4.3e-05 Score=70.22 Aligned_cols=48 Identities=13% Similarity=0.053 Sum_probs=34.9
Q ss_pred CCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 182 DGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
-.++|++..++++.+.+..-.....-|.|+|++|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 358999999999888876422233457899999999999999887754
No 80
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.29 E-value=0.00068 Score=79.18 Aligned_cols=172 Identities=17% Similarity=0.228 Sum_probs=97.1
Q ss_pred CCccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccC
Q 005191 182 DGLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCG 250 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~ 250 (709)
..+.|.++.+++|.+.+.. +-..++-|.++|++|+|||+||+.++++...+| +..+..+......
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~----~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE----EEEEHHHHHSSCT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE----EEEEhHHhhcccc
Confidence 4578899988888876531 112367899999999999999999998764332 2221111111000
Q ss_pred C-HHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCChh-------------hhhhhhcCCCCC--CCC
Q 005191 251 G-LVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKYG-------------QLEYFDGGLDRF--GPG 314 (709)
Q Consensus 251 ~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~~-------------~~~~l~~~l~~~--~~g 314 (709)
+ .... +...+.......+.+|+||+++... ....++..+... ..+
T Consensus 280 gese~~-------------------lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 280 GESESN-------------------LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp THHHHH-------------------HHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC
T ss_pred hHHHHH-------------------HHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC
Confidence 0 0011 2222333335678999999995311 122222222111 234
Q ss_pred eEEEEEcCchhhhh-hc----CcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 315 SRIIVTTRDKTILE-RY----GTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 315 srIIvTTR~~~v~~-~~----~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
..||.||....... .+ .-.+.++++..+.++-.++|..+.-+.....+ .....|++.+.|.-
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d---vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD---VDLEQVANETHGHV 407 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT---CCHHHHHHHCCSCC
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhcCCCC
Confidence 45666665543221 11 23568899999999888888776632211111 11567788887764
No 81
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.22 E-value=0.00046 Score=63.83 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=24.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
....+.|+|++|+|||||++.++.....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3468899999999999999999987654
No 82
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.19 E-value=0.0009 Score=78.76 Aligned_cols=149 Identities=15% Similarity=0.154 Sum_probs=81.6
Q ss_pred CCccccchhhhHHHhhhhccC-------CCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHH
Q 005191 182 DGLIGLESHVEQVRSLLAIGL-------PDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVH 254 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~ 254 (709)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++.....-...+.+. ...........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 568999998888888776321 11237899999999999999999997643322333333 22222210000
Q ss_pred HHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCC--hhhhhhhhcCCCC-----------CCCCeEEEEEc
Q 005191 255 LRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNK--YGQLEYFDGGLDR-----------FGPGSRIIVTT 321 (709)
Q Consensus 255 l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~--~~~~~~l~~~l~~-----------~~~gsrIIvTT 321 (709)
.......++ .....+|+||+++. .+....++..+.. ...+.+||+||
T Consensus 568 -----------------~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 568 -----------------GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp --------------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred -----------------cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 001222222 12345999999964 2333333322211 12356888888
Q ss_pred Cchh-----h----hhhc------CcceEEEecCCChHHHHHHhhhc
Q 005191 322 RDKT-----I----LERY------GTHRIYEVEGLNCNEALRLFCSC 353 (709)
Q Consensus 322 R~~~-----v----~~~~------~~~~~~~L~~L~~~ea~~Lf~~~ 353 (709)
.... + ...+ ..+.++.+++|+.++-.+++...
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 7310 0 0001 12357888999888877776544
No 83
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.15 E-value=0.0012 Score=68.27 Aligned_cols=27 Identities=33% Similarity=0.644 Sum_probs=24.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.++.+.|+|++|+|||+||+.+++.+.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457888999999999999999999874
No 84
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.12 E-value=0.00045 Score=60.06 Aligned_cols=73 Identities=7% Similarity=0.047 Sum_probs=53.4
Q ss_pred CCcceEEecCCcccccCchHHHHHHHHHhCCCceEEcCCCCCCCcccHHHHHHHHhccceeEEeccCcccchhhHHHHHH
Q 005191 3 SCKYDVFLSFRGEDTRDNFLSHLVVALQEKKIKTFIDEELTRGDQISPALVKAIEESMISVIIFSKNYASSKWCLDELVK 82 (709)
Q Consensus 3 ~~~ydvFiS~~~~D~~~~f~~~L~~~L~~~g~~~~~d~~~~~g~~~~~~i~~ai~~S~~~ivvlS~~y~~S~wc~~El~~ 82 (709)
..+|.+||||+.+| . .+.|...|.+.|+..- | +.|+.|.++|++.++....|+||..|+..
T Consensus 2 ~~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 2 TAEIRLYITEGEVE-D---YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCCEEEEECCCCSH-H---HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred CceEEEEEecccHh-H---HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 35799999999998 2 4555555555565332 2 45778999999999999999999999976
Q ss_pred HHHhhhhCCceeEeEE
Q 005191 83 ILKCHKKNIQLVIPIF 98 (709)
Q Consensus 83 ~~~~~~~~~~~vlPvf 98 (709)
+. +.+..|+-|.
T Consensus 63 A~----~~gkpIigV~ 74 (111)
T 1eiw_A 63 AR----KSSKPIITVR 74 (111)
T ss_dssp HT----TTTCCEEEEC
T ss_pred HH----HcCCCEEEEE
Confidence 54 3445566553
No 85
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.10 E-value=0.0039 Score=62.63 Aligned_cols=51 Identities=22% Similarity=0.267 Sum_probs=34.1
Q ss_pred CCCCccccchhhhHHHhhhhc--c--------CCCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 180 DSDGLIGLESHVEQVRSLLAI--G--------LPDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
..+.++|.+....++.+.... . -.-.+-+.|+|++|+|||||++.++....
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 345677877666555544321 0 01122389999999999999999998764
No 86
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.95 E-value=0.0021 Score=75.88 Aligned_cols=150 Identities=18% Similarity=0.267 Sum_probs=85.6
Q ss_pred CCCccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccccc
Q 005191 181 SDGLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKC 249 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~ 249 (709)
-..++|.+..+++|.+++.. +-.....+.|+|++|+||||||+.++......| +.+. ........
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~~~ 278 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSKL 278 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSSSS
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhhhh
Confidence 46699999999999888753 223456799999999999999999988754332 2222 11110000
Q ss_pred CC-HHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHccCceEEEecCCCCh----------------hhhhhhhcCCCCCC
Q 005191 250 GG-LVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQRMKVFIVLDDVNKY----------------GQLEYFDGGLDRFG 312 (709)
Q Consensus 250 ~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~~kr~LLVLDdv~~~----------------~~~~~l~~~l~~~~ 312 (709)
.+ .... ....+.......+.++++|+++.. ..+-.+...... .
T Consensus 279 ~g~~~~~-------------------l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~ 338 (806)
T 1ypw_A 279 AGESESN-------------------LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-R 338 (806)
T ss_dssp TTHHHHH-------------------HHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-T
T ss_pred hhhHHHH-------------------HHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-c
Confidence 00 0000 112222333456789999999421 111122222221 2
Q ss_pred CCeEEEEEcCchhhhh-hc----CcceEEEecCCChHHHHHHhhhcc
Q 005191 313 PGSRIIVTTRDKTILE-RY----GTHRIYEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 313 ~gsrIIvTTR~~~v~~-~~----~~~~~~~L~~L~~~ea~~Lf~~~a 354 (709)
.+..+|.||....... .. .....+.+...+.++-.+++...+
T Consensus 339 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 3456666666542221 11 223567888888888888887665
No 87
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.94 E-value=0.0025 Score=65.20 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=35.8
Q ss_pred CCCCCccccchhhhHHHhhhhcc-C---------CCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 179 SDSDGLIGLESHVEQVRSLLAIG-L---------PDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 179 ~~~~~~vGR~~el~~L~~~L~~~-~---------~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...+.++|.+...+++.+....- . .-.+-+.|+|++|+|||||++.++....
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 34456888887766666544210 0 0122389999999999999999998764
No 88
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.90 E-value=0.0034 Score=69.57 Aligned_cols=171 Identities=15% Similarity=0.149 Sum_probs=91.1
Q ss_pred CCCCccccchhhhHHHhhhhc---c-------CCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeeccccccc
Q 005191 180 DSDGLIGLESHVEQVRSLLAI---G-------LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKC 249 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~ 249 (709)
....++|.+....++.+.... . -.-.+-+.|+|++|+|||+||+.++...... .+.+. ........
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~~~~~~ 104 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVEMF 104 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGGGTSSC
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhHHHHhh
Confidence 446788988877766655421 0 0112348999999999999999999875421 12222 11111110
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHc----cCceEEEecCCCCh----------------hhhhhhhcCCC
Q 005191 250 GGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQ----RMKVFIVLDDVNKY----------------GQLEYFDGGLD 309 (709)
Q Consensus 250 ~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~----~kr~LLVLDdv~~~----------------~~~~~l~~~l~ 309 (709)
.+. ....++..++ ..+.++++|+++.. ..+..++..+.
T Consensus 105 ~g~----------------------~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 105 VGV----------------------GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp TTH----------------------HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred hhh----------------------HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 000 1122222222 23579999999531 11233333332
Q ss_pred CC--CCCeEEEEEcCchhhhhh-----cCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCc
Q 005191 310 RF--GPGSRIIVTTRDKTILER-----YGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNP 379 (709)
Q Consensus 310 ~~--~~gsrIIvTTR~~~v~~~-----~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlP 379 (709)
.+ ..+..++.||..+..+.. ......+.++..+.++-.+++..++-+....++. ....+++.+.|+.
T Consensus 163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 236 (499)
T ss_dssp GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCSCC
T ss_pred ccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCCCC
Confidence 11 233455666666544321 1234578899999888888887665221111111 1345667777765
No 89
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.87 E-value=0.0066 Score=64.91 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+.|+|++|+|||++|+.+++.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999876
No 90
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.56 E-value=0.012 Score=60.03 Aligned_cols=124 Identities=16% Similarity=0.079 Sum_probs=66.3
Q ss_pred EEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHH-HccC
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDR-LQRM 286 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~-L~~k 286 (709)
+.|+|++|+||||||+.++...... .+.+. ....... ......+ ....+.+. -...
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~~~--~~~~~~~-----------------~i~~vf~~a~~~~ 103 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELLNM--YVGESER-----------------AVRQVFQRAKNSA 103 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTCSS--TTHHHHH-----------------HHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHHhh--hhhHHHH-----------------HHHHHHHHHHhcC
Confidence 8999999999999999999875431 22222 1111110 0000000 11111111 1345
Q ss_pred ceEEEecCCCChh-------------hhhhhhcCCCC--CCCCeEEEEEcCchhhhhhc-----CcceEEEecCCChHHH
Q 005191 287 KVFIVLDDVNKYG-------------QLEYFDGGLDR--FGPGSRIIVTTRDKTILERY-----GTHRIYEVEGLNCNEA 346 (709)
Q Consensus 287 r~LLVLDdv~~~~-------------~~~~l~~~l~~--~~~gsrIIvTTR~~~v~~~~-----~~~~~~~L~~L~~~ea 346 (709)
+.++++|+++... ....+...+.. .....-++.+|..+...... ..+..+.++..+.++-
T Consensus 104 p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r 183 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183 (274)
T ss_dssp SEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHH
T ss_pred CCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHH
Confidence 7899999986421 11122222211 12234556677666543321 3457788888898888
Q ss_pred HHHhhhcc
Q 005191 347 LRLFCSCA 354 (709)
Q Consensus 347 ~~Lf~~~a 354 (709)
.+++....
T Consensus 184 ~~il~~~~ 191 (274)
T 2x8a_A 184 LAILKTIT 191 (274)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 88887655
No 91
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.50 E-value=0.013 Score=66.00 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=34.0
Q ss_pred ccccchhhhHHHhhhhc----cCCCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 184 LIGLESHVEQVRSLLAI----GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 184 ~vGR~~el~~L~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
.+|-+.....+.+.+.. .......+.|+|++|+||||||+.++.....
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 67776666655443321 1124568999999999999999999987643
No 92
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.46 E-value=0.0029 Score=74.39 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=37.8
Q ss_pred CCccccchhhhHHHhhhhccC-------CCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 182 DGLIGLESHVEQVRSLLAIGL-------PDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 468899998888877665311 123478999999999999999999876
No 93
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.37 E-value=0.0095 Score=61.90 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=34.2
Q ss_pred hhhHHHhhhhccCC-CceEEEEEccCCCchhHHHHHHHHHhh-hcccceEEEe
Q 005191 190 HVEQVRSLLAIGLP-DVRLVGIWGMGGIGKTTIAGVVFNQFS-QKFEGKYFMA 240 (709)
Q Consensus 190 el~~L~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~v~ 240 (709)
.++.+.+++....+ ....+.|+|++|+|||+||..+++... .....+.++.
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33444455553222 246788999999999999999999876 5433344443
No 94
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.04 E-value=0.015 Score=56.50 Aligned_cols=44 Identities=25% Similarity=0.165 Sum_probs=29.9
Q ss_pred HHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 194 VRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 194 L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
|...+..+-....++.|.|++|+|||||+..++. ..-..++|+.
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 3344432333457999999999999999999988 2223455554
No 95
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.02 E-value=0.0091 Score=69.72 Aligned_cols=150 Identities=17% Similarity=0.237 Sum_probs=76.2
Q ss_pred CCccccchhhhHHHhhhhc-----------cCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccC
Q 005191 182 DGLIGLESHVEQVRSLLAI-----------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCG 250 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~ 250 (709)
..+.|.++..++|.+.+.. +....+-+.++|++|.|||.||++++...... |+. + +
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-----f~~-v---~---- 543 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS-I---K---- 543 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-----EEE-C---C----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-----eEE-e---c----
Confidence 4566777777777665532 11224668899999999999999999986433 222 1 0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCChhHHH-HHHHccCceEEEecCCCChh----------------hhhhhhcCCCCC--
Q 005191 251 GLVHLRNQVLSKLLGENFDIGTPKIPQYI-RDRLQRMKVFIVLDDVNKYG----------------QLEYFDGGLDRF-- 311 (709)
Q Consensus 251 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~l-~~~L~~kr~LLVLDdv~~~~----------------~~~~l~~~l~~~-- 311 (709)
.. .++....++ .+.....+ ...-...+++|+||+++... ....|+..+...
T Consensus 544 -~~----~l~s~~vGe-----se~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 544 -GP----ELLTMWFGE-----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp -HH----HHHTTTCSS-----CHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred -cc----hhhccccch-----HHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 01 111111110 11122222 22334578999999995310 123333222211
Q ss_pred CCCeEEEEEcCchhhh-----hhcCcceEEEecCCChHHHHHHhhhcc
Q 005191 312 GPGSRIIVTTRDKTIL-----ERYGTHRIYEVEGLNCNEALRLFCSCA 354 (709)
Q Consensus 312 ~~gsrIIvTTR~~~v~-----~~~~~~~~~~L~~L~~~ea~~Lf~~~a 354 (709)
..+.-||-||..+..+ ....-+..+.++..+.++-.++|..+.
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 2233444455444221 111245677887777777778887665
No 96
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.84 E-value=0.019 Score=55.10 Aligned_cols=117 Identities=19% Similarity=0.112 Sum_probs=58.8
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHh--cCCCCCCCCC------C---
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKL--LGENFDIGTP------K--- 274 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l--~~~~~~~~~~------~--- 274 (709)
..|.|++..|.||||.|...+-+...+--.+.++.-+... .. .+...+...+.-.+ .+........ .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~-~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WP-NGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SC-CHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CC-ccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4566666677999999999988866654444444322211 11 22233333331000 0010000000 0
Q ss_pred -hhHHHHHHHccC-ceEEEecCCCC-----hhhhhhhhcCCCCCCCCeEEEEEcCch
Q 005191 275 -IPQYIRDRLQRM-KVFIVLDDVNK-----YGQLEYFDGGLDRFGPGSRIIVTTRDK 324 (709)
Q Consensus 275 -~~~~l~~~L~~k-r~LLVLDdv~~-----~~~~~~l~~~l~~~~~gsrIIvTTR~~ 324 (709)
.....++.+.+. -=|||||++.. .-..+.+...+........||+|+|+.
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 222334444444 45999999832 222233333333334677899999987
No 97
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.75 E-value=0.33 Score=50.77 Aligned_cols=165 Identities=13% Similarity=-0.034 Sum_probs=99.8
Q ss_pred HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh-cccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCC
Q 005191 193 QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ-KFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIG 271 (709)
Q Consensus 193 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~ 271 (709)
++.+.+. + .-.++..++|+.|.||++.+..+...+.. .|+....+. ... . .++..+...+-..
T Consensus 8 ~l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~---~-~~~~~l~~~~~~~--------- 71 (343)
T 1jr3_D 8 QLRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-IDP---N-TDWNAIFSLCQAM--------- 71 (343)
T ss_dssp THHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CCT---T-CCHHHHHHHHHHH---------
T ss_pred HHHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ecC---C-CCHHHHHHHhcCc---------
Confidence 3444444 2 24678999999999999999999887543 343211111 111 1 3333333222111
Q ss_pred CCChhHHHHHHHccCceEEEecCCCC---hhhhhhhhcCCCCCCCCeEEEEEcCc-------hhhhhhc-CcceEEEecC
Q 005191 272 TPKIPQYIRDRLQRMKVFIVLDDVNK---YGQLEYFDGGLDRFGPGSRIIVTTRD-------KTILERY-GTHRIYEVEG 340 (709)
Q Consensus 272 ~~~~~~~l~~~L~~kr~LLVLDdv~~---~~~~~~l~~~l~~~~~gsrIIvTTR~-------~~v~~~~-~~~~~~~L~~ 340 (709)
-+.+++-++|+|+++. .+..+.+...+....+++.+|++|.. ..+.... ....+++..+
T Consensus 72 ----------plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~ 141 (343)
T 1jr3_D 72 ----------SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQT 141 (343)
T ss_dssp ----------HHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECC
T ss_pred ----------CCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeC
Confidence 1234566888999864 34556666555544567777766643 1233332 2346889999
Q ss_pred CChHHHHHHhhhcccccCCCChhhHHHHHHHHHHhcCCchHHHHH
Q 005191 341 LNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYAKGNPLALQVL 385 (709)
Q Consensus 341 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~gGlPLAL~~l 385 (709)
++.++..+.+.+.+-... -.-..+.+..+++.++|.+..+...
T Consensus 142 l~~~~l~~~l~~~~~~~g--~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 142 PEQAQLPRWVAARAKQLN--LELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp CCTTHHHHHHHHHHHHTT--CEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhchHHHHHHHH
Confidence 999999988877663221 1223456888999999998877654
No 98
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.64 E-value=0.011 Score=70.44 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=38.8
Q ss_pred CCccccchhhhHHHhhhhccC-------CCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 182 DGLIGLESHVEQVRSLLAIGL-------PDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
..++|.+..++.+...+.... .....+.|+|++|+|||++|+.+++....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 357999998888887775321 11358899999999999999999987643
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.57 E-value=0.014 Score=60.62 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..+++.|+|++|+|||+||.+++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3467889999999999999999886
No 100
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.48 E-value=0.032 Score=59.01 Aligned_cols=49 Identities=24% Similarity=0.237 Sum_probs=35.5
Q ss_pred hHHHhhhh-ccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 192 EQVRSLLA-IGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 192 ~~L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
..|...|. .+-+..+++.|.|++|+||||||.+++......-..++|+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34555554 33345689999999999999999999987665434456665
No 101
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.41 E-value=0.0063 Score=63.75 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=38.8
Q ss_pred CCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 181 SDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...++|++..++.+...+..+ .-+.|+|++|+|||+||+.+++....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 356999999998888877643 36889999999999999999987643
No 102
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.38 E-value=0.0076 Score=56.73 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.5
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.+|.|.|++|+||||+|+.+++++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998754
No 103
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.35 E-value=0.021 Score=55.11 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=33.2
Q ss_pred cchhhhHHHhhhhcc-CCCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 187 LESHVEQVRSLLAIG-LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 187 R~~el~~L~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
|++.++.+.+.+... .....+++|.|++|+|||||++.+...+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 445566666655532 235689999999999999999999886643
No 104
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.33 E-value=0.0047 Score=65.51 Aligned_cols=111 Identities=13% Similarity=0.108 Sum_probs=66.0
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEE-EeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYF-MANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRL 283 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~-v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 283 (709)
..+++|.|+.|.|||||.+.+...+.......++ +....+.... .. ...+...............+...|
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~--~~-------~~~v~q~~~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHE--SK-------KCLVNQREVHRDTLGFSEALRSAL 193 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC--CS-------SSEEEEEEBTTTBSCHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhh--cc-------ccceeeeeeccccCCHHHHHHHHh
Confidence 3599999999999999999998876544333332 2211110000 00 000000001111122566888899
Q ss_pred ccCceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCchhhh
Q 005191 284 QRMKVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDKTIL 327 (709)
Q Consensus 284 ~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~~v~ 327 (709)
...+=+|++|...+.+.++.+.... ..|..||+||......
T Consensus 194 ~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 194 REDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 9999999999998777666544432 2466788888876544
No 105
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.31 E-value=0.019 Score=58.02 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=63.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeec--ccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVR--EESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRD 281 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~--~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~ 281 (709)
...+++|+|+.|.|||||.+.+...+...+...+++.... ...+....+ +...............+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~----------v~q~~~gl~~~~l~~~la~ 93 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSI----------VNQREVGEDTKSFADALRA 93 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSE----------EEEEEBTTTBSCHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCccee----------eeHHHhCCCHHHHHHHHHH
Confidence 4579999999999999999999886654434444443110 000000000 0000001111235666777
Q ss_pred HHccCceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCchhh
Q 005191 282 RLQRMKVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDKTI 326 (709)
Q Consensus 282 ~L~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~~v 326 (709)
.+..++=+|++|...+.+....+.... ..|..|++||.+...
T Consensus 94 aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 94 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 777788899999997655544433321 246678888876543
No 106
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.23 E-value=0.012 Score=62.54 Aligned_cols=46 Identities=20% Similarity=0.117 Sum_probs=34.2
Q ss_pred ccccchhhhHHHhhhh-------------ccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 184 LIGLESHVEQVRSLLA-------------IGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 184 ~vGR~~el~~L~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
++|.+..++.+...+. ........+.|+|++|+|||++|+.+++..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 6777777777666652 111134678899999999999999999876
No 107
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.23 E-value=0.014 Score=56.61 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=28.2
Q ss_pred HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 193 QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 193 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
+|.+.+....+...+++|.|++|.|||||++.+...+.
T Consensus 10 ~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 10 GVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34343332234568999999999999999999988765
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.17 E-value=0.0097 Score=58.70 Aligned_cols=110 Identities=16% Similarity=0.010 Sum_probs=57.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCC--CCCCCC-hhHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENF--DIGTPK-IPQYIR 280 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~--~~~~~~-~~~~l~ 280 (709)
...++.|+|..|+||||++..++++...+-..+.++...-+.. . ..++++.++.... ...... +.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~-------~~~i~srlG~~~~~~~~~~~~~i~~~i~ 82 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-S-------IRNIQSRTGTSLPSVEVESAPEILNYIM 82 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-G-------CSSCCCCCCCSSCCEEESSTHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-H-------HHHHHHhcCCCccccccCCHHHHHHHHH
Confidence 3578999999999999999999998766544444443111100 0 0112222221111 111111 222333
Q ss_pred HHHcc-CceEEEecCCCC--hhhhhhhhcCCCCCCCCeEEEEEcCch
Q 005191 281 DRLQR-MKVFIVLDDVNK--YGQLEYFDGGLDRFGPGSRIIVTTRDK 324 (709)
Q Consensus 281 ~~L~~-kr~LLVLDdv~~--~~~~~~l~~~l~~~~~gsrIIvTTR~~ 324 (709)
+.+.+ +.-+||+|.+.. .++++.+.. +. ..|..||+|.+..
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~--~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANI-LA--ENGFVVIISGLDK 126 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHH-HH--HTTCEEEEECCSB
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHH-HH--hCCCeEEEEeccc
Confidence 22222 345999999843 334443332 11 1267899999843
No 109
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.04 E-value=0.012 Score=54.90 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=22.1
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.+|+|.|++|+||||+|+.++.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988753
No 110
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.95 E-value=0.084 Score=55.55 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=28.3
Q ss_pred HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 193 QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 193 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.|-.+|..+-+...++.|.|++|+||||||.+++...
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444454333456899999999999999999998864
No 111
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.89 E-value=0.014 Score=61.28 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=35.8
Q ss_pred CCCCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 178 ISDSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 178 ~~~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
+.....++|.+...+.+...+... ...-+.|+|++|+|||+||+.+++...
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 344566999988655544333322 223488999999999999999998754
No 112
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.74 E-value=0.3 Score=52.91 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=25.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
.+.+|.++|.+|+||||++..++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999877654
No 113
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.73 E-value=0.18 Score=54.54 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=25.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
...++.++|++|+||||++..++..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999999877654
No 114
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.72 E-value=0.09 Score=54.94 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=25.5
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
+...+++|+|+.|+||||++..++..+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 346899999999999999999998866543
No 115
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.67 E-value=0.016 Score=54.82 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+.|.|.|++|+||||+|+.+++++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999875
No 116
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.66 E-value=0.017 Score=55.55 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
....|.|.|++|+||||+++.++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999876
No 117
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.65 E-value=0.022 Score=63.08 Aligned_cols=45 Identities=24% Similarity=0.201 Sum_probs=37.5
Q ss_pred CCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 182 DGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 182 ~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
..++|++..++.+...+..+ .-+.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 36899999998888777633 4688999999999999999988653
No 118
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.62 E-value=0.082 Score=55.07 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=25.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
...+++|+|++|+||||++..++..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999999877654
No 119
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.62 E-value=0.012 Score=56.19 Aligned_cols=28 Identities=32% Similarity=0.593 Sum_probs=23.1
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcc
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKF 233 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 233 (709)
|.|.|+|++|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5688999999999999999887754433
No 120
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.56 E-value=0.032 Score=52.83 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=23.1
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
..|.|.|++|+||||+|+.+++++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998753
No 121
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.55 E-value=0.018 Score=53.51 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=18.6
Q ss_pred eEEEEEccCCCchhHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVV 225 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v 225 (709)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 122
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.55 E-value=0.019 Score=53.81 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.5
Q ss_pred eEEEEEccCCCchhHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 123
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.53 E-value=0.07 Score=55.68 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=27.9
Q ss_pred HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 193 QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 193 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.|..+|..+-+...++.|+|.+|+|||+||.+++....
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 33344433323457999999999999999999988653
No 124
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.51 E-value=0.036 Score=53.34 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=24.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...+|+|.|++|.|||||++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999998775
No 125
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.45 E-value=0.032 Score=57.29 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=25.2
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
....+|+|.|.+|+||||||+.+...+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45789999999999999999999887654
No 126
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.44 E-value=0.078 Score=52.67 Aligned_cols=26 Identities=23% Similarity=0.472 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+++|+|+.|.|||||.+.++.-+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999987643
No 127
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.43 E-value=0.024 Score=53.87 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+|.|.|++|+||||+|+.++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999998875
No 128
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.43 E-value=0.027 Score=56.25 Aligned_cols=27 Identities=19% Similarity=-0.002 Sum_probs=23.5
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.....|+|.|++|+||||+|+.+.+++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998764
No 129
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.40 E-value=0.072 Score=55.34 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=41.9
Q ss_pred hhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHH
Q 005191 189 SHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSK 262 (709)
Q Consensus 189 ~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~ 262 (709)
.-+..|.+++ .+-....++.|.|.+|+||||||..++.....+-..++|+. . + ....++...+...
T Consensus 53 TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s-l----E--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 53 SGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS-L----E--MGKKENIKRLIVT 118 (315)
T ss_dssp CSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE-S----S--SCHHHHHHHHHHH
T ss_pred CChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE-C----C--CCHHHHHHHHHHH
Confidence 3344454545 33345679999999999999999999887654434555554 1 1 3344555555544
No 130
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.30 E-value=0.14 Score=52.69 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=27.3
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEE
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFM 239 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v 239 (709)
..+++++|.+|+||||++..++..+...-..+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 67999999999999999999998776543333333
No 131
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.28 E-value=0.024 Score=53.81 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|++|+|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999875
No 132
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.21 E-value=0.016 Score=61.93 Aligned_cols=111 Identities=15% Similarity=0.116 Sum_probs=62.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRL 283 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 283 (709)
...+++|+|+.|.|||||+..+...+.......+.+... .. . ..... . ..-+...............++..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~-~~--e-~~~~~---~-~~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PI--E-YVFKH---K-KSIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES-SC--C-SCCCC---S-SSEEEEEEBTTTBSCSHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc-cH--h-hhhcc---C-ceEEEeeecCCCHHHHHHHHHHHh
Confidence 457899999999999999999988765432344433210 00 0 00000 0 000000000111122566788888
Q ss_pred ccCceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCchh
Q 005191 284 QRMKVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDKT 325 (709)
Q Consensus 284 ~~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~~ 325 (709)
...+-+|++|.+.+.+.+....... ..|..|+.|+....
T Consensus 207 ~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 207 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 8888899999997766554433322 34566777776554
No 133
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=94.20 E-value=0.21 Score=46.60 Aligned_cols=105 Identities=21% Similarity=0.232 Sum_probs=71.2
Q ss_pred cceEEecC--------------CcccccCchHHHHHHHHHhCCCceEEcC-CCC-------C-CCcccHHHHHHHHhccc
Q 005191 5 KYDVFLSF--------------RGEDTRDNFLSHLVVALQEKKIKTFIDE-ELT-------R-GDQISPALVKAIEESMI 61 (709)
Q Consensus 5 ~ydvFiS~--------------~~~D~~~~f~~~L~~~L~~~g~~~~~d~-~~~-------~-g~~~~~~i~~ai~~S~~ 61 (709)
+=-+||+| ..+| -.....|...-....+--|.|. +.. . -+.|-..+.+.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 34578998 3445 4456666666666666556675 431 2 34688899999999999
Q ss_pred eeEEeccCcccchhhHHHHHHHHHhhhhCCceeEeEEeecC-CCcccccCCchh
Q 005191 62 SVIIFSKNYASSKWCLDELVKILKCHKKNIQLVIPIFYNVD-PSVVRNQTGSFK 114 (709)
Q Consensus 62 ~ivvlS~~y~~S~wc~~El~~~~~~~~~~~~~vlPvf~~v~-p~~vr~~~g~~~ 114 (709)
.|+++|++...|.|-.+|+..++. ..+.+||-|..+-+ .+++.+..|++.
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~ 133 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFK 133 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBC
T ss_pred EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccch
Confidence 999999999999999999987762 34456777764422 234444445433
No 134
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.18 E-value=0.28 Score=53.43 Aligned_cols=68 Identities=18% Similarity=0.093 Sum_probs=42.7
Q ss_pred chhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcc-cceEEEeeecccccccCCHHHHHHHHHHHh
Q 005191 188 ESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKF-EGKYFMANVREESEKCGGLVHLRNQVLSKL 263 (709)
Q Consensus 188 ~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l 263 (709)
..-...|..++ .+-....++.|.|.+|+||||||..++....... ..++|+. . + ....++...++...
T Consensus 184 ~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s-l----E--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 184 RTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS-L----E--MPAAQLTLRMMCSE 252 (444)
T ss_dssp CCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE-S----S--SCHHHHHHHHHHHH
T ss_pred cCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE-C----C--CCHHHHHHHHHHHH
Confidence 33344455555 3334567999999999999999999998766432 3455554 1 1 33445666655443
No 135
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.18 E-value=0.025 Score=53.60 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=23.1
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
..|.|.|++|+||||+++.++.++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999987653
No 136
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.17 E-value=0.021 Score=53.35 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.1
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.+|+|+|++|+|||||++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988753
No 137
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.12 E-value=0.2 Score=54.37 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=25.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
..++|.++|.+|+||||++..++..+..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999887765
No 138
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.09 E-value=0.039 Score=54.55 Aligned_cols=37 Identities=22% Similarity=0.148 Sum_probs=28.8
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
...++.|.|++|+||||||.+++......-..++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4578999999999999999998876654434555654
No 139
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.08 E-value=0.028 Score=53.22 Aligned_cols=26 Identities=15% Similarity=0.413 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988653
No 140
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.08 E-value=0.027 Score=52.40 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...|+|.|++|+||||+|+.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999988753
No 141
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.08 E-value=0.051 Score=51.45 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=24.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...+|.|.|++|+||||+++.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999988754
No 142
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.06 E-value=0.022 Score=53.65 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+.|.|.|++|+||||+++.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998875
No 143
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.05 E-value=0.021 Score=54.94 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..+|+|.|++|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998875
No 144
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.04 E-value=0.071 Score=56.52 Aligned_cols=40 Identities=10% Similarity=-0.043 Sum_probs=29.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhccc-ceEEEeeec
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFE-GKYFMANVR 243 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~v~~~~ 243 (709)
....++|+|++|+|||||++.+++.+..+.+ ..+.+..++
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIG 213 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID 213 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEES
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEec
Confidence 3568999999999999999999987765443 333334344
No 145
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.92 E-value=0.04 Score=51.56 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..+++|.|++|+||||+++.++..+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 5789999999999999999998764
No 146
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.88 E-value=0.025 Score=53.23 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=18.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
..+|.|.|++|+||||+|+.+++++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999987653
No 147
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.87 E-value=0.034 Score=52.77 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..+|+|.|++|+||||+|+.+++.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999998764
No 148
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.86 E-value=0.033 Score=52.99 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+|+|.|++|+||||+|+.+++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998865
No 149
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.86 E-value=0.053 Score=50.87 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=26.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc-ccceE
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK-FEGKY 237 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~ 237 (709)
..++++|.|.+|+|||||+..+...+..+ +...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ 37 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT 37 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeE
Confidence 35789999999999999999999887654 44333
No 150
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.85 E-value=0.041 Score=53.20 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=30.8
Q ss_pred hhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 189 SHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 189 ~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.-+..+..++.. -+..+.+.|+|++|+|||++|..+++.+.
T Consensus 43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 335566666653 23345799999999999999999998764
No 151
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.84 E-value=0.037 Score=53.21 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+|+|.|++|+||||+|+.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998764
No 152
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.84 E-value=0.087 Score=57.45 Aligned_cols=32 Identities=25% Similarity=0.523 Sum_probs=25.7
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcccceE
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKY 237 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~ 237 (709)
+.++|+|.+|+|||||+..+......++...+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 46889999999999999999987665554443
No 153
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.83 E-value=0.03 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=21.7
Q ss_pred EEEEEccCCCchhHHHHHHHHHhh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.|+|.|++|+||||+++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998764
No 154
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.83 E-value=0.15 Score=52.71 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=25.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
...+++|+|++|+||||++..++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 46899999999999999999999877654
No 155
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.82 E-value=0.033 Score=53.58 Aligned_cols=26 Identities=42% Similarity=0.475 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+++|.|++|+|||||++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998875
No 156
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.82 E-value=0.032 Score=53.07 Aligned_cols=28 Identities=32% Similarity=0.593 Sum_probs=23.8
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcc
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKF 233 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 233 (709)
++++|.|+.|+|||||++.+...+...|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5789999999999999999998765444
No 157
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.81 E-value=0.033 Score=55.94 Aligned_cols=24 Identities=29% Similarity=0.210 Sum_probs=21.7
Q ss_pred eEEEEEccCCCchhHHHHHHHHHh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.++.|.|++|+||||||+.++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998865
No 158
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.78 E-value=0.053 Score=52.95 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=27.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
...+++|.|++|+|||||+..++......-..+.|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3478999999999999999999976544333444443
No 159
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.76 E-value=0.057 Score=52.18 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.6
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
...|+|.|++|+||||+|+.+++++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999887544
No 160
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.74 E-value=0.028 Score=54.35 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...+++|.|++|+|||||++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 357899999999999999999988763
No 161
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.73 E-value=0.034 Score=53.94 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...+++|+|++|+|||||++.+...+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999988654
No 162
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.72 E-value=0.032 Score=52.35 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.5
Q ss_pred EEEEEccCCCchhHHHHHHHHHhh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.|.|.|++|+||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999988753
No 163
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.70 E-value=0.037 Score=55.42 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=23.9
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
....+|+|.|++|+||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467899999999999999999988654
No 164
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.69 E-value=0.04 Score=52.01 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...|+|.|++|+||||+|+.+++++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998765
No 165
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.68 E-value=0.054 Score=55.52 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...++.|.|++|+||||+|+.+..++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 166
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.67 E-value=0.04 Score=53.12 Aligned_cols=28 Identities=25% Similarity=0.333 Sum_probs=24.2
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
...|+|.|++|+||||+|+.+++.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3689999999999999999999876543
No 167
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.66 E-value=0.035 Score=52.98 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..+|+|.|++|+||||+|+.+++++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998875
No 168
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.63 E-value=0.038 Score=52.40 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
....|+|+|++|+||||+++.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999886
No 169
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.60 E-value=0.047 Score=57.37 Aligned_cols=30 Identities=30% Similarity=0.317 Sum_probs=25.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKF 233 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 233 (709)
....+.|.|++|+||||+++.++..+...|
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 456789999999999999999998765444
No 170
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.59 E-value=0.37 Score=52.68 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=33.5
Q ss_pred hhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhccc-ceEEEe
Q 005191 191 VEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFE-GKYFMA 240 (709)
Q Consensus 191 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~v~ 240 (709)
...|.+.+ .+-....++.|.|.+|+||||||..++..+..... .++|+.
T Consensus 190 ~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 190 FTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred cHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 33444444 23334579999999999999999999987765322 455554
No 171
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.57 E-value=0.029 Score=53.05 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.4
Q ss_pred eEEEEEccCCCchhHHHHHHHHHh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+|.|.|++|+||||+|+.++.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998875
No 172
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.55 E-value=0.05 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..+|+|.|++|+||||+|+.+++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 173
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.55 E-value=0.19 Score=50.78 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..+++|.|+.|.|||||.+.++--.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999987643
No 174
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.51 E-value=0.033 Score=51.93 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.6
Q ss_pred eEEEEEccCCCchhHHHHHHHHHh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..|.|.|++|+||||+|+.+++++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998875
No 175
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.49 E-value=0.04 Score=52.88 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 176
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.48 E-value=0.041 Score=53.77 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...|.|.|++|+||||+|+.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678999999999999999998875
No 177
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.46 E-value=0.045 Score=52.40 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.0
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHH
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
+...+|+|.|+.|+||||+|+.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34679999999999999999999875
No 178
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.40 E-value=0.047 Score=52.46 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...|+|.|++|+||||+|+.++..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998875
No 179
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.39 E-value=0.073 Score=52.61 Aligned_cols=38 Identities=29% Similarity=0.260 Sum_probs=27.6
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhh-hcccceEEEe
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFS-QKFEGKYFMA 240 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~v~ 240 (709)
+...++.|.|.+|+|||+||.+++.... ..-..++|+.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 3457999999999999999999876543 3333444544
No 180
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.38 E-value=0.046 Score=52.79 Aligned_cols=28 Identities=14% Similarity=0.276 Sum_probs=24.4
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
..+|+|.|++|+||||+++.+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876543
No 181
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.34 E-value=0.24 Score=47.71 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=19.0
Q ss_pred eEEEEEccCCCchhHHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
-+..|+|.+|.|||++|......
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 36789999999999999876544
No 182
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.34 E-value=0.044 Score=52.63 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..+++|.|++|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 183
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.31 E-value=0.047 Score=55.05 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=23.2
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 184
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.31 E-value=0.045 Score=51.91 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=22.3
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
+|+|.|++|+||||+|+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987643
No 185
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.28 E-value=0.3 Score=53.47 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=24.4
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhccc
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFE 234 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 234 (709)
+.+.|.|.+|+|||+++..+...+.....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999987765433
No 186
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.27 E-value=0.047 Score=50.60 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=21.0
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.|+|.|++|+||||+|+.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 187
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.27 E-value=0.044 Score=53.56 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.7
Q ss_pred eEEEEEccCCCchhHHHHHHHHHh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+|+|+|++|+||||+++.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998764
No 188
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.26 E-value=0.073 Score=55.41 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=33.5
Q ss_pred ccccchhhhHHHhhhhcc--CCCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 184 LIGLESHVEQVRSLLAIG--LPDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 184 ~vGR~~el~~L~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
++|-...+..+...+... ...+.+++|.|++|+|||||++.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455555555555544432 34567999999999999999999877654
No 189
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.26 E-value=0.048 Score=52.76 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...+++|.|+.|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988654
No 190
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.21 E-value=0.047 Score=52.60 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
..++++|+|++|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999987654
No 191
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.21 E-value=0.047 Score=51.80 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.3
Q ss_pred eEEEEEccCCCchhHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
.+++|.|++|.|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999976
No 192
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.21 E-value=0.11 Score=54.84 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=30.7
Q ss_pred hhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 191 VEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 191 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
..++...+....++..+|+|+|.+|+|||||+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 334444444334567899999999999999999998876443
No 193
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.20 E-value=0.18 Score=51.76 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=24.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...+++|+|++|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999987754
No 194
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.20 E-value=0.072 Score=52.47 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=27.3
Q ss_pred HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 193 QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 193 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.|-.+|..+-+...++.|.|++|+|||||+..++...
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3444443332345799999999999999999998853
No 195
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.19 E-value=0.22 Score=52.05 Aligned_cols=65 Identities=20% Similarity=0.150 Sum_probs=41.1
Q ss_pred hhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHh
Q 005191 191 VEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKL 263 (709)
Q Consensus 191 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l 263 (709)
...|.+++. +-....++.|.|.+|+||||||..++.....+-..+.|+. . . ....++...++...
T Consensus 33 ~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS-l-----E-ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 33 FVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS-L-----E-MSAEQLALRALSDL 97 (338)
T ss_dssp CHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE-S-----S-SCHHHHHHHHHHHH
T ss_pred ChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-C-----C-CCHHHHHHHHHHHh
Confidence 344444442 2234579999999999999999999987655333444554 1 1 33455666665544
No 196
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.07 E-value=0.24 Score=54.07 Aligned_cols=52 Identities=17% Similarity=0.099 Sum_probs=34.9
Q ss_pred chhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 188 ESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 188 ~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
..-+..|.+++. +-....++.|.|.+|+||||||.+++.....+-..++|+.
T Consensus 181 ~TG~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 181 PSGFTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CCSCHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCcHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 333444444442 3334579999999999999999999987765523444543
No 197
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.06 E-value=0.05 Score=52.49 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+|+|+|++|.||||+|+.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999987753
No 198
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.97 E-value=0.054 Score=52.88 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+++|.|++|+|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999998743
No 199
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.97 E-value=0.062 Score=50.52 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...+|+|.|+.|+||||+++.+...+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3568999999999999999999887643
No 200
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.97 E-value=0.061 Score=52.66 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=24.0
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998864
No 201
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.96 E-value=0.054 Score=51.54 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.3
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
.|+|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987644
No 202
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.95 E-value=0.079 Score=55.93 Aligned_cols=49 Identities=27% Similarity=0.261 Sum_probs=35.0
Q ss_pred hHHHhhhh-ccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 192 EQVRSLLA-IGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 192 ~~L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
..|...|. .+-+..+++.|.|++|+||||||.+++......-..++|+.
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34444554 33345679999999999999999999987655444566665
No 203
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.95 E-value=0.14 Score=53.64 Aligned_cols=106 Identities=16% Similarity=0.120 Sum_probs=59.4
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHHc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRLQ 284 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L~ 284 (709)
...++|+|+.|.|||||++.+...+.. ....+.+....+.... ... ..+.-- .. ........+...|.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~--~~~-------~~i~~~-~g-gg~~~r~~la~aL~ 238 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK--HHK-------NYTQLF-FG-GNITSADCLKSCLR 238 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS--SCS-------SEEEEE-CB-TTBCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc--cch-------hEEEEE-eC-CChhHHHHHHHHhh
Confidence 358999999999999999998876543 2445555432211100 000 000000 00 22236667788888
Q ss_pred cCceEEEecCCCChhhhhhhhcCCCCCCCCeEEEEEcCchh
Q 005191 285 RMKVFIVLDDVNKYGQLEYFDGGLDRFGPGSRIIVTTRDKT 325 (709)
Q Consensus 285 ~kr~LLVLDdv~~~~~~~~l~~~l~~~~~gsrIIvTTR~~~ 325 (709)
.++-+|++|...+.+.++.+. .+. ..+..+|+||....
T Consensus 239 ~~p~ilildE~~~~e~~~~l~-~~~--~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 239 MRPDRIILGELRSSEAYDFYN-VLC--SGHKGTLTTLHAGS 276 (330)
T ss_dssp SCCSEEEECCCCSTHHHHHHH-HHH--TTCCCEEEEEECSS
T ss_pred hCCCEEEEcCCChHHHHHHHH-HHh--cCCCEEEEEEcccH
Confidence 889999999997755444333 222 11223566665443
No 204
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.93 E-value=0.08 Score=56.00 Aligned_cols=49 Identities=29% Similarity=0.300 Sum_probs=35.0
Q ss_pred hHHHhhhh-ccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 192 EQVRSLLA-IGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 192 ~~L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
..|..+|. .+-+..+++.|.|.+|+||||||.+++......-..++|+.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34444454 23334679999999999999999999987665544566766
No 205
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.92 E-value=0.051 Score=52.24 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=19.8
Q ss_pred EEEEEccCCCchhHHHHHHHH
Q 005191 207 LVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~ 227 (709)
.|+|.|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 206
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.91 E-value=0.054 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.4
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 207
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.82 E-value=0.053 Score=53.24 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...|.|.|++|+||||+|+.+++++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998864
No 208
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.81 E-value=0.096 Score=54.40 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=28.3
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEE
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFM 239 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v 239 (709)
+.++|+|.|-|||||||.+..++.-+...-..+..+
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 579999999999999999999888776543333333
No 209
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.80 E-value=0.072 Score=52.70 Aligned_cols=37 Identities=27% Similarity=0.199 Sum_probs=26.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh-hcccceEEEe
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS-QKFEGKYFMA 240 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~v~ 240 (709)
...+++|.|++|+|||||++.++.... ..-....++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 457999999999999999999885332 2233444443
No 210
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.76 E-value=0.1 Score=50.65 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=30.2
Q ss_pred hhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 189 SHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 189 ~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
+..+.+...+.. ...+.++|+|.+|+|||||+..+.......
T Consensus 16 ~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 16 RLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 334444444432 256899999999999999999998875444
No 211
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.74 E-value=0.05 Score=53.21 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
....|.|.|++|+||||+|+.+++++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999988753
No 212
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.73 E-value=0.039 Score=53.41 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.3
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
+|+|.|++|+||||+++.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987643
No 213
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.72 E-value=0.058 Score=53.74 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..+++|.|++|+|||||++.+++++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999764
No 214
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.70 E-value=0.058 Score=52.39 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.|+|.|++|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 215
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.65 E-value=0.061 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...|+|.|++|+||||+++.+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998876
No 216
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.57 E-value=0.059 Score=51.91 Aligned_cols=22 Identities=45% Similarity=0.564 Sum_probs=20.1
Q ss_pred eEEEEEccCCCchhHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 217
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.51 E-value=0.051 Score=52.30 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+.++|+|++|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3678999999999999999998754
No 218
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.51 E-value=0.067 Score=51.34 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..+|+|+|+.|+||||+|+.+.+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999876
No 219
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.46 E-value=0.071 Score=50.46 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.2
Q ss_pred EEEEEccCCCchhHHHHHHHHHhh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988653
No 220
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.46 E-value=0.12 Score=50.25 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.3
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
....|+|+|.+|+|||||+..+.......
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 46789999999999999999998865433
No 221
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.45 E-value=0.063 Score=53.82 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...++.|.|++|+||||+|+.+...+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999988753
No 222
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.40 E-value=0.061 Score=50.39 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=19.8
Q ss_pred CceEEEEEccCCCchhHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVF 226 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~ 226 (709)
...+++|.|++|.|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 35789999999999999999643
No 223
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.36 E-value=0.06 Score=52.50 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.7
Q ss_pred eEEEEEccCCCchhHHHHHHHHHh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..|.|.|++|+||||+|+.+++++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998875
No 224
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.34 E-value=0.083 Score=51.22 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...+|.|.|++|+||||+++.+...+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357899999999999999999988765
No 225
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.28 E-value=0.14 Score=52.88 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=27.4
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhhcc--cceEEEe
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQKF--EGKYFMA 240 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~v~ 240 (709)
++.|.|++|+|||||+.+++......+ ..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 789999999999999999988776553 3456665
No 226
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.27 E-value=0.47 Score=51.63 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=36.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcc-cceEEEeeecccccccCCHHHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKF-EGKYFMANVREESEKCGGLVHLRNQVLSK 262 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~v~~~~~~~~~~~~l~~l~~~ll~~ 262 (709)
..+.++|.|.+|+|||+|+..+++.+.... +..+| ..+++.. ....++.+.+...
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~-~~iGER~---rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF-AGVGERT---REGNDLYHEMIES 207 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEE-EEESCCH---HHHHHHHHHHHHH
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEE-EECCCcc---hHHHHHHHHhhhc
Confidence 346889999999999999999999764433 33444 3344332 2345555555543
No 227
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.26 E-value=0.085 Score=57.31 Aligned_cols=49 Identities=22% Similarity=0.177 Sum_probs=33.3
Q ss_pred CccccchhhhHHHhhhhc------------cCCCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 183 GLIGLESHVEQVRSLLAI------------GLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 183 ~~vGR~~el~~L~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
.++|-+...+.+...+.. .....+-+.++|++|+|||++|+.++..+..
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 466666666655544421 0112456889999999999999999987643
No 228
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.23 E-value=0.078 Score=53.15 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+|+|.|+.|+||||+++.++.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999875
No 229
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.19 E-value=0.12 Score=53.37 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=27.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
...+++|+|++|+|||||+..++..+... ...+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 46799999999999999999998866543 3334443
No 230
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.05 E-value=0.073 Score=60.62 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=39.3
Q ss_pred CCCCccccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 180 DSDGLIGLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 180 ~~~~~vGR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..+..
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 3456899998888888777743 58899999999999999999986543
No 231
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.05 E-value=0.088 Score=52.39 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+++|.|+.|.|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999988754
No 232
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.03 E-value=0.45 Score=52.70 Aligned_cols=54 Identities=7% Similarity=-0.015 Sum_probs=36.7
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhhhc-ccceEEEeeecccccccCCHHHHHHHHHHHh
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFSQK-FEGKYFMANVREESEKCGGLVHLRNQVLSKL 263 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l 263 (709)
....++.|.|.+|+||||||.+++.....+ -..++|+. . + ....++...++...
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s-~----E--~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM-L----E--ESVEETAEDLIGLH 294 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE-S----S--SCHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe-c----c--CCHHHHHHHHHHHH
Confidence 346789999999999999999999887654 33455654 1 1 23345555555443
No 233
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.00 E-value=0.084 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.4
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+|+|.|+.|+||||+|+.++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998865
No 234
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.00 E-value=0.3 Score=51.77 Aligned_cols=40 Identities=18% Similarity=0.044 Sum_probs=28.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhccc-ceEEEeeec
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFE-GKYFMANVR 243 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~v~~~~ 243 (709)
..+.++|.|.+|+|||+|+.++++.+..+.+ ..+.+..++
T Consensus 174 rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIG 214 (427)
T 3l0o_A 174 KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLID 214 (427)
T ss_dssp TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECS
T ss_pred CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEec
Confidence 3467899999999999999999997765433 333444344
No 235
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.99 E-value=0.062 Score=55.16 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=20.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
+..+|+|.|++|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 236
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.91 E-value=0.13 Score=51.90 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=29.7
Q ss_pred hhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHH
Q 005191 191 VEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 191 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+..+|....+....+.|+|++|.|||.+|..+++.
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34466777654344567999999999999999999885
No 237
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.85 E-value=0.082 Score=51.10 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+++|.|+.|+|||||++.+...+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35789999999999999999998765
No 238
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.80 E-value=0.46 Score=53.56 Aligned_cols=28 Identities=32% Similarity=0.289 Sum_probs=23.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
.+++.|+|.+|.||||++..+...+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 3688999999999999999998876554
No 239
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.79 E-value=0.096 Score=54.34 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.4
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
....+++|.|+.|+|||||++.+...+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4568999999999999999999887654
No 240
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.77 E-value=0.096 Score=53.45 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
...+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999983
No 241
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.76 E-value=0.1 Score=50.73 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 242
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.76 E-value=0.09 Score=51.57 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...+++|.|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 457999999999999999999988654
No 243
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.73 E-value=0.094 Score=54.86 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.5
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.+|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 244
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.71 E-value=0.094 Score=50.91 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.7
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.|+|.|++|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998865
No 245
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.70 E-value=0.076 Score=51.95 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998754
No 246
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.67 E-value=0.095 Score=51.34 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEEccCCCchhHHHHHHHHHh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.|.|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998875
No 247
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.65 E-value=0.075 Score=53.26 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...|+|.|++|+||||+++.++..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999998653
No 248
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.62 E-value=0.14 Score=54.24 Aligned_cols=49 Identities=27% Similarity=0.277 Sum_probs=34.8
Q ss_pred hHHHhhhh-ccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 192 EQVRSLLA-IGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 192 ~~L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
..|-..|. .+-+..+++.|.|.+|+||||||.+++......-..++|+.
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 34444454 22234578999999999999999999887655444667776
No 249
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.52 E-value=0.1 Score=51.37 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...|.|.|++|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998753
No 250
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.52 E-value=0.21 Score=51.02 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=28.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhccc-ceEEEe
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFE-GKYFMA 240 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~v~ 240 (709)
...+++|.|++|+|||||+..++..+..... .+.|+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4579999999999999999999987654433 344443
No 251
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.45 E-value=0.17 Score=47.56 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=23.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
.++++|.|.+|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987654
No 252
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.40 E-value=0.1 Score=54.13 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=22.1
Q ss_pred eEEEEEccCCCchhHHHHHHHHHh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+|.|.|++|+||||||..++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999875
No 253
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.35 E-value=0.11 Score=51.56 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..+|+|.|++|.||||+|+.++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998875
No 254
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.34 E-value=0.11 Score=53.60 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..+|+|.|++|+||||||..++.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3688999999999999999998864
No 255
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.29 E-value=0.13 Score=53.01 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...++.|.|+.|+||||||..+++++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999998874
No 256
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.27 E-value=0.086 Score=55.02 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
..+|.|.|+.|+||||||..++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999875
No 257
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.25 E-value=0.18 Score=52.00 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...+++|+|+.|+||||+++.++..+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999887654
No 258
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.22 E-value=0.1 Score=50.08 Aligned_cols=25 Identities=28% Similarity=0.121 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+.|.|.|++|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999998864
No 259
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.15 E-value=0.13 Score=47.54 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+++|.|+.|.|||||++.++.-+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45799999999999999999998865
No 260
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.07 E-value=0.12 Score=50.10 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=46.2
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhhcccceEEEee---ecccccccCCHHHHHHHHHHHhcCCCCCCCCCC-hhHHHHHH
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMAN---VREESEKCGGLVHLRNQVLSKLLGENFDIGTPK-IPQYIRDR 282 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~---~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~l~~~ 282 (709)
+|.|.|++|+||||+|+.+++++. ...++. +++.......+-...+..+.. +. .-.++ ....+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~istGdllR~~i~~~t~lg~~~~~~~~~--G~---lvpd~iv~~lv~~~ 71 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHISTGDILREAVQKGTPLGKKAKEYMER--GE---LVPDDLIIALIEEV 71 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHHHHHHHTCHHHHHHHHHHHH--TC---CCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhcChhhhhHHHHHhc--CC---cCCHHHHHHHHHHh
Confidence 477899999999999999988641 122320 000000001111111111111 11 11222 56677777
Q ss_pred HccCceEEEecCC-CChhhhhhhh
Q 005191 283 LQRMKVFIVLDDV-NKYGQLEYFD 305 (709)
Q Consensus 283 L~~kr~LLVLDdv-~~~~~~~~l~ 305 (709)
+..... +|||.. .+..|.+.+.
T Consensus 72 l~~~~~-~ilDGfPRt~~Qa~~l~ 94 (206)
T 3sr0_A 72 FPKHGN-VIFDGFPRTVKQAEALD 94 (206)
T ss_dssp CCSSSC-EEEESCCCSHHHHHHHH
T ss_pred hccCCc-eEecCCchhHHHHHHHH
Confidence 766554 688998 5566665553
No 261
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.98 E-value=0.21 Score=49.80 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...++.+.|.||+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 367888999999999999999998766
No 262
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=90.97 E-value=0.26 Score=53.90 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=36.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc-ccceEEEeeecccccccCCHHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK-FEGKYFMANVREESEKCGGLVHLRNQVLS 261 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~v~~~~~~~~~~~~l~~l~~~ll~ 261 (709)
..+.++|.|.+|+|||+|+.++++.+... -+..+|. .+++.. ....++.+.+..
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGER~---rEv~e~~~~~~~ 218 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGERT---REGNDLYMEMKE 218 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESCCS---HHHHHHHHHHHH
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-EcccCc---HHHHHHHHhhhc
Confidence 34678999999999999999999986543 3444444 344432 234555555554
No 263
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.97 E-value=0.25 Score=48.41 Aligned_cols=27 Identities=19% Similarity=0.011 Sum_probs=22.9
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
-.|.+.|.||+||||+|..++.....+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 347789999999999999999877654
No 264
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.82 E-value=0.22 Score=63.31 Aligned_cols=48 Identities=29% Similarity=0.326 Sum_probs=34.9
Q ss_pred HHHhhhh-ccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 193 QVRSLLA-IGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 193 ~L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
.|..+|. .+-+..+.+.|+|++|+|||+||.+++.....+=....|+.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3444444 22335689999999999999999999987665545566665
No 265
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.80 E-value=0.22 Score=51.26 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=28.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEE
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFM 239 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v 239 (709)
..++|+|+|-||+||||+|..++..+...-..+..+
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 568899999999999999999998876653333333
No 266
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.77 E-value=0.086 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=16.5
Q ss_pred ceEEEEEccCCCchhHHHHHHH-HHh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVF-NQF 229 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~-~~~ 229 (709)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 643
No 267
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.69 E-value=0.13 Score=52.69 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=21.0
Q ss_pred eEEEEEccCCCchhHHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.+|.|.|++|+||||+|+.+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 268
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.68 E-value=0.095 Score=49.25 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.9
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
.+++|+|.+|+|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999887654
No 269
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.66 E-value=0.15 Score=52.72 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=24.3
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
....+++|.|+.|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999999988654
No 270
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.58 E-value=0.22 Score=47.27 Aligned_cols=26 Identities=27% Similarity=0.093 Sum_probs=22.0
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
.++.|+|+.|+||||++..++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999888876543
No 271
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.49 E-value=0.18 Score=53.66 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=24.4
Q ss_pred cCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 201 GLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 201 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+-+....++|+|++|.|||||++.++...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33456799999999999999999998754
No 272
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.47 E-value=0.19 Score=55.69 Aligned_cols=46 Identities=9% Similarity=-0.008 Sum_probs=31.7
Q ss_pred ccchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 186 GLESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 186 GR~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
.|.+-.+.+.+..........+|.+.|++|+||||+|+.+++++..
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3433344444444222234578999999999999999999998764
No 273
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.40 E-value=0.12 Score=55.85 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+|.|+|++|+||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46899999999999999999988764
No 274
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.38 E-value=0.25 Score=49.61 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=26.1
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcccceEEE
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFM 239 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v 239 (709)
++|+|.|-||+||||+|..++..+..+-..+..+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 5788899999999999999998876543333333
No 275
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.29 E-value=0.18 Score=49.61 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=24.8
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
....|+|.|++|+||||+++.+...+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999998765
No 276
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.26 E-value=0.24 Score=52.26 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...+++|+|+.|+||||++..++..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 4679999999999999999999887654
No 277
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.25 E-value=0.22 Score=50.42 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...++.|.|++|+|||||+..++..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3579999999999999999999875543
No 278
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.21 E-value=0.17 Score=49.93 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+|+|.|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998764
No 279
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.20 E-value=0.14 Score=48.95 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=21.3
Q ss_pred EEEEEccCCCchhHHHHHHHHHhh
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988654
No 280
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.16 E-value=0.27 Score=50.06 Aligned_cols=28 Identities=32% Similarity=0.609 Sum_probs=24.2
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
.++|+|.|-||+||||+|..++..+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 3678889999999999999999887654
No 281
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.03 E-value=0.18 Score=49.97 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...|+|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998764
No 282
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.03 E-value=0.16 Score=53.48 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=27.2
Q ss_pred HhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 195 RSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 195 ~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...|..+-+...++.|+|++|+|||||+..++...
T Consensus 121 D~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 121 DKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34443333456899999999999999999998865
No 283
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.02 E-value=0.4 Score=50.24 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=25.3
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
.+..+++|+|.+|+|||||+..+...+...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 457899999999999999999998765443
No 284
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.85 E-value=0.5 Score=59.38 Aligned_cols=51 Identities=27% Similarity=0.273 Sum_probs=36.0
Q ss_pred hhhHHHhhhh-ccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 190 HVEQVRSLLA-IGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 190 el~~L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
-..+|..+|. .+-....++.|.|.+|+||||||.+++......-..+.|+.
T Consensus 716 G~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 716 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 3445555554 23334679999999999999999999987765434555664
No 285
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.84 E-value=0.36 Score=53.31 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=24.3
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
..++|+|+|.+|+||||++..++..+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46799999999999999999999877654
No 286
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.81 E-value=0.18 Score=54.82 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=25.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
..++|+|+|.+|+||||++..++..+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999876654
No 287
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.78 E-value=0.3 Score=50.14 Aligned_cols=29 Identities=34% Similarity=0.348 Sum_probs=25.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
...+++|+|.+|+||||++..++..+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999876654
No 288
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.69 E-value=0.29 Score=53.75 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=28.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
...+++|+|.+|+|||||++.++..+... ...+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 46799999999999999999998876543 3444443
No 289
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.54 E-value=0.17 Score=49.14 Aligned_cols=24 Identities=33% Similarity=0.163 Sum_probs=21.2
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..+++|.|+.|.|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999988764
No 290
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.51 E-value=0.29 Score=50.71 Aligned_cols=37 Identities=27% Similarity=0.305 Sum_probs=27.6
Q ss_pred HHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 193 QVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 193 ~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.|..+|..+-+...++.|.|.+|+|||+||.+++...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444444333346899999999999999999998763
No 291
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.49 E-value=0.2 Score=53.55 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=22.3
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.+|+|.|++|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998753
No 292
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.45 E-value=0.16 Score=50.30 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
...+++|.|+.|.|||||.+.++.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457999999999999999998865
No 293
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.39 E-value=0.59 Score=45.41 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=24.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
...|+|.|+.|+||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999987654
No 294
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=89.38 E-value=2.5 Score=42.85 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
..-.++|+|.+|+|||||...+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCceEEEEecCCCchHHHHHHHhc
Confidence 345788999999999999988865
No 295
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.33 E-value=0.18 Score=50.06 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=22.1
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHH
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.. .+++|.|+.|.|||||.+.++.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 35 79999999999999999998763
No 296
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.15 E-value=0.2 Score=47.40 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.-.++|.|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998874
No 297
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.09 E-value=0.53 Score=49.21 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=24.6
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
....+++|.|++|+|||||...+...+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45689999999999999999999876543
No 298
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.06 E-value=0.23 Score=44.87 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.3
Q ss_pred eEEEEEccCCCchhHHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
+-|+|.|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998864
No 299
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.05 E-value=0.33 Score=46.95 Aligned_cols=29 Identities=24% Similarity=0.528 Sum_probs=25.0
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhccc
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFE 234 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 234 (709)
..|+|-|..|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 46889999999999999999998865554
No 300
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.99 E-value=0.17 Score=49.73 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
...+++|.|+.|.|||||.+.++-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998875
No 301
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=88.93 E-value=0.36 Score=53.75 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=25.3
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKF 233 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 233 (709)
...+|.++|++|.||||+|+.+++.+...+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 457899999999999999999998765443
No 302
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.90 E-value=0.2 Score=53.83 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=26.9
Q ss_pred hHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHH
Q 005191 192 EQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 192 ~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..|-.+|..+-....++.|.|++|+|||||+..++-.
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3444455433334679999999999999999987643
No 303
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.66 E-value=0.21 Score=47.49 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.-.++|.|.+|+|||||...+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999874
No 304
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.66 E-value=0.24 Score=45.49 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.0
Q ss_pred eEEEEEccCCCchhHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
..|+|.|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999876
No 305
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.65 E-value=0.26 Score=46.14 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.+-+.|.|.+|+||||||.++..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 467889999999999999999885
No 306
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.54 E-value=0.73 Score=44.68 Aligned_cols=110 Identities=15% Similarity=0.021 Sum_probs=53.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRL 283 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L 283 (709)
...+..++|.-|.||||.+...+.+...+-..+..+...... . .+. ..+.+.++........... ..+.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~--R-~ge----~~i~s~~g~~~~a~~~~~~-~~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDN--R-YSE----EDVVSHNGLKVKAVPVSAS-KDIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------------CCEEECSSG-GGGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCC--c-chH----HHHHhhcCCeeEEeecCCH-HHHHHHH
Confidence 357888999999999999999988876554344433311110 0 111 1233333211111000101 1122222
Q ss_pred ccCceEEEecCCC--ChhhhhhhhcCCCCCCCCeEEEEEcCch
Q 005191 284 QRMKVFIVLDDVN--KYGQLEYFDGGLDRFGPGSRIIVTTRDK 324 (709)
Q Consensus 284 ~~kr~LLVLDdv~--~~~~~~~l~~~l~~~~~gsrIIvTTR~~ 324 (709)
.++--+|++|.+. +.++++.+... . ..|..||+|.++.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l-~--~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVL-A--NRGYRVIVAGLDQ 138 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHH-H--HTTCEEEEEECSB
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHH-h--hCCCEEEEEeccc
Confidence 2333499999983 34455443321 1 2377899999854
No 307
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.49 E-value=0.29 Score=54.82 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...+++|.|+.|+|||||++.++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 4578999999999999999999988754
No 308
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.49 E-value=0.2 Score=50.46 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++.-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999988753
No 309
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.45 E-value=0.32 Score=50.13 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=23.5
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
+...+++|+|+.|.|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 355799999999999999999988754
No 310
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.45 E-value=0.2 Score=46.95 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=19.0
Q ss_pred EEEEEccCCCchhHHHHHHHH
Q 005191 207 LVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~ 227 (709)
-|+|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998876
No 311
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.39 E-value=0.23 Score=49.42 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
...+++|.|+.|.|||||.+.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999875
No 312
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.35 E-value=0.24 Score=44.83 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEEccCCCchhHHHHHHHHH
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
-|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 313
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.28 E-value=0.24 Score=58.24 Aligned_cols=51 Identities=24% Similarity=0.329 Sum_probs=38.1
Q ss_pred CCCccccchhhhHHHhhhhcc-----------CCCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 181 SDGLIGLESHVEQVRSLLAIG-----------LPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
-..++|.+...+.|.+.+... -.....+.++|++|+|||+||+.++.....
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 356788888888777766421 123456889999999999999999997643
No 314
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.26 E-value=0.45 Score=49.41 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=27.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
..++...|-||+||||+|..++..+...-..+..+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 467777899999999999999998776633344443
No 315
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.20 E-value=0.24 Score=49.53 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998873
No 316
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=88.18 E-value=0.25 Score=49.86 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++--
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998874
No 317
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=88.16 E-value=0.27 Score=47.30 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=23.0
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.+|+|.|+.|+||||+|+.+++++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999864
No 318
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.16 E-value=0.59 Score=45.89 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=21.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
...|+|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999999987654
No 319
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=88.09 E-value=0.33 Score=47.75 Aligned_cols=32 Identities=28% Similarity=0.600 Sum_probs=24.6
Q ss_pred EEEEccCCCchhHHHHHHHHHhhhcccceEEE
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFM 239 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v 239 (709)
|+|.|-||+||||+|..++..+...-..+..+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 56699999999999999999876653333333
No 320
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.09 E-value=0.21 Score=50.78 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
...+++|.|+.|.|||||++.++-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 356899999999999999998865
No 321
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.02 E-value=0.23 Score=50.13 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++--
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 4579999999999999999998753
No 322
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.01 E-value=1.1 Score=57.20 Aligned_cols=57 Identities=25% Similarity=0.259 Sum_probs=40.2
Q ss_pred ccccchhhhHHHhhhh-ccCCCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 184 LIGLESHVEQVRSLLA-IGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 184 ~vGR~~el~~L~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
..+...-...|-.+|. .+-+..+++.|.|++|+||||||.+++......-..++|+.
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3344444556666665 33345689999999999999999999988765544566665
No 323
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=87.95 E-value=0.64 Score=48.85 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=28.4
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
+..+++...|-||+||||+|..++..+...-..+..+.
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 44667777899999999999999988776533344443
No 324
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.86 E-value=0.72 Score=45.60 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=27.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhc-ccceEEE
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQK-FEGKYFM 239 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~v 239 (709)
...|.|.|+.|+||||+++.+.+.+... ++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 4689999999999999999999987654 4434433
No 325
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.86 E-value=0.22 Score=50.34 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
...+++|.|+.|.|||||++.++.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457999999999999999999875
No 326
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.84 E-value=0.22 Score=49.44 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
...+++|.|+.|.|||||.+.++-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999875
No 327
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.82 E-value=0.82 Score=43.76 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=26.3
Q ss_pred EEEEEccCCCchhHHHHHHHHHhhhcccceEEE
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFM 239 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v 239 (709)
.|+|-|.-|+||||.++.+++.+..+-..+.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 478899999999999999999887764444443
No 328
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.77 E-value=0.24 Score=49.85 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++.-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4569999999999999999998764
No 329
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=87.74 E-value=0.53 Score=46.20 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=23.9
Q ss_pred CceEEEEE-ccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIW-GMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~-G~gGiGKTtLA~~v~~~~~~~ 232 (709)
..++|+|+ +-||+||||+|..++..+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhC
Confidence 35677777 568999999999999988765
No 330
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.72 E-value=0.22 Score=49.01 Aligned_cols=25 Identities=32% Similarity=0.064 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+|+|.|+.|.|||||++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4679999999999999999988765
No 331
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=87.71 E-value=0.46 Score=53.45 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=24.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...+|.|.|++|+||||+|+.+.+++..
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 3578999999999999999999988653
No 332
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.68 E-value=0.23 Score=49.91 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.3
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
...+++|.|+.|.|||||.+.++.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356999999999999999999865
No 333
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.66 E-value=0.25 Score=49.64 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
...+++|.|+.|.|||||.+.++-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999999875
No 334
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.63 E-value=0.34 Score=44.04 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999998874
No 335
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.62 E-value=0.78 Score=44.56 Aligned_cols=27 Identities=37% Similarity=0.507 Sum_probs=24.0
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
..|++.|+.|+||||+++.+++.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999987654
No 336
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.61 E-value=0.23 Score=49.53 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++.-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998653
No 337
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=87.59 E-value=0.47 Score=45.17 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=26.0
Q ss_pred eEEEEE-ccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 206 RLVGIW-GMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 206 ~vv~I~-G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
++|+|+ +-||+||||+|..++..+..+-..+..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 567777 77899999999999998776433444444
No 338
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.58 E-value=0.26 Score=47.75 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.4
Q ss_pred eEEEEEccCCCchhHHHHHHHHHh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+|+|.|+.|+||||+++.+...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999988764
No 339
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.57 E-value=0.24 Score=48.84 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+++|.|+.|.|||||.+.++.-+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999987643
No 340
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=87.55 E-value=0.61 Score=52.16 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=24.3
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...+|.+.|++|+||||+|+.+...+..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 3578999999999999999999987654
No 341
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.54 E-value=0.25 Score=50.04 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++.-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4579999999999999999998753
No 342
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.53 E-value=0.17 Score=50.89 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
....|+|.|..|+||||+|+.+++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999887765
No 343
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.53 E-value=0.25 Score=46.16 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999863
No 344
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.51 E-value=0.38 Score=47.13 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=25.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
....|.|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999998765
No 345
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=87.43 E-value=1.4 Score=58.18 Aligned_cols=143 Identities=12% Similarity=0.048 Sum_probs=0.0
Q ss_pred eEEEEEccCCCchhHHHHHHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHHH--
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDRL-- 283 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~L-- 283 (709)
+-+.++|++|+|||++|+.+.... ..+....+-......+.. ....+...+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~-~~~~~~~infsa~ts~~~--------------------------~~~~i~~~~~~ 1320 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS-SLYDVVGINFSKDTTTEH--------------------------ILSALHRHTNY 1320 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC-SSCEEEEEECCTTCCHHH--------------------------HHHHHHHHBCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC-CCCceEEEEeecCCCHHH--------------------------HHHHHHHHhhh
Q ss_pred -------------ccCceEEEecCCCChh--------hhhhhhcCCCCCC------------CCeEEEEEcCchh-----
Q 005191 284 -------------QRMKVFIVLDDVNKYG--------QLEYFDGGLDRFG------------PGSRIIVTTRDKT----- 325 (709)
Q Consensus 284 -------------~~kr~LLVLDdv~~~~--------~~~~l~~~l~~~~------------~gsrIIvTTR~~~----- 325 (709)
.++++++.+||++-.. ..+.+...+...+ .+..+|.++-...
T Consensus 1321 ~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~ 1400 (2695)
T 4akg_A 1321 VTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRI 1400 (2695)
T ss_dssp EEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCC
T ss_pred ccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCc
Q ss_pred --hhhhcCcceEEEecCCChHHHHHHhhhcccccCCCChhhHHHHHHHHHHh
Q 005191 326 --ILERYGTHRIYEVEGLNCNEALRLFCSCAFKENHCPEDLLKHSETAAHYA 375 (709)
Q Consensus 326 --v~~~~~~~~~~~L~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~Iv~~~ 375 (709)
-..-.....++.++..+.++-.++|.....+.-...+.....+..++..+
T Consensus 1401 ~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1401 PMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp CCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH
T ss_pred cCChhhhheeeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
No 346
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.42 E-value=0.41 Score=44.71 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...-|+|.|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999988754
No 347
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=87.41 E-value=0.3 Score=48.03 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.3
Q ss_pred eEEEEEccCCCchhHHHHHHHHHh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
-.++|.|++|+||||+|+.+++++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 457999999999999999998865
No 348
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.36 E-value=0.21 Score=48.74 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++.-
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998763
No 349
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.35 E-value=0.32 Score=45.72 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=21.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999998764
No 350
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.29 E-value=0.29 Score=45.84 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.2
Q ss_pred eEEEEEccCCCchhHHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
--|+|.|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999864
No 351
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=87.28 E-value=3.4 Score=40.52 Aligned_cols=38 Identities=21% Similarity=0.110 Sum_probs=26.8
Q ss_pred cchhhhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHh
Q 005191 187 LESHVEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 187 R~~el~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
|+.+.+.+..++.. . -+.|+|+.|.|||.+|..++...
T Consensus 95 ~~~Q~~ai~~~~~~----~-~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVD----K-RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTT----S-EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC----C-CEEEEeCCCCCHHHHHHHHHHHc
Confidence 44455555555542 1 27789999999999999887764
No 352
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=87.20 E-value=0.34 Score=46.30 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999988863
No 353
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.18 E-value=0.27 Score=49.63 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
...+++|.|+.|.|||||.+.++-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 457999999999999999999875
No 354
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.18 E-value=0.31 Score=44.15 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=19.9
Q ss_pred eEEEEEccCCCchhHHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
--|+|.|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988763
No 355
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=87.15 E-value=0.57 Score=49.25 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=24.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
+..+|+|+|.+|+|||||...+.......
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 47899999999999999999998765443
No 356
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=87.08 E-value=0.55 Score=50.70 Aligned_cols=29 Identities=34% Similarity=0.348 Sum_probs=25.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 232 (709)
...+++|+|++|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45789999999999999999999877654
No 357
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.07 E-value=0.24 Score=46.68 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
+...|+|.|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4677899999999999999998763
No 358
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.04 E-value=0.38 Score=44.10 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.1
Q ss_pred ceEEEEEccCCCchhHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
.--|+|.|.+|+|||||...+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 35688999999999999998875
No 359
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=87.03 E-value=0.53 Score=51.62 Aligned_cols=30 Identities=20% Similarity=0.094 Sum_probs=24.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcc
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKF 233 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 233 (709)
...+|.++|++|+||||+++.+++.+...|
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 346889999999999999999998765444
No 360
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=86.97 E-value=0.27 Score=49.18 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+++|.|+.|.|||||.+.++--+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999987644
No 361
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.95 E-value=0.32 Score=44.37 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998864
No 362
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.94 E-value=0.32 Score=44.15 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEEccCCCchhHHHHHHHHH
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
-|+|.|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998863
No 363
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.93 E-value=0.34 Score=50.26 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4679999999999999999998865
No 364
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.93 E-value=0.34 Score=43.97 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=18.9
Q ss_pred EEEEccCCCchhHHHHHHHHH
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~ 228 (709)
|+|.|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998764
No 365
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=86.91 E-value=0.31 Score=49.26 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=20.0
Q ss_pred EEEEEccCCCchhHHHHHHHHH
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.++|+|+.|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 366
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=86.82 E-value=0.29 Score=52.73 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
....++|.|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 557999999999999999999987
No 367
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=86.77 E-value=0.28 Score=49.13 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++.-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998764
No 368
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.76 E-value=0.34 Score=44.13 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.4
Q ss_pred EEEEEccCCCchhHHHHHHHHH
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 369
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=86.76 E-value=0.32 Score=44.43 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.0
Q ss_pred eEEEEEccCCCchhHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
--|+|.|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999998864
No 370
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.74 E-value=0.33 Score=45.38 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998874
No 371
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.69 E-value=0.31 Score=44.51 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=19.6
Q ss_pred eEEEEEccCCCchhHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
--|+|.|.+|+|||||...+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999999886
No 372
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=86.65 E-value=0.36 Score=44.52 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
....|+|.|.+|+|||||...+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456788999999999999999876
No 373
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.65 E-value=0.31 Score=44.39 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=18.4
Q ss_pred EEEEEccCCCchhHHHHHHHH
Q 005191 207 LVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~ 227 (709)
-|+|.|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998854
No 374
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=86.64 E-value=0.19 Score=57.02 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=34.6
Q ss_pred CCCccccchhhhHHHhhhhccCC---------CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 181 SDGLIGLESHVEQVRSLLAIGLP---------DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 181 ~~~~vGR~~el~~L~~~L~~~~~---------~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+.++|.+...+.+...+..+.. +..-+.++|++|+|||+||+.+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 35689998776666555543310 01158899999999999999988754
No 375
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=86.63 E-value=0.34 Score=44.12 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.2
Q ss_pred eEEEEEccCCCchhHHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
--|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999998874
No 376
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.61 E-value=0.28 Score=49.89 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++.-
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3568999999999999999988763
No 377
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.60 E-value=0.47 Score=42.95 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..-|+|.|.+|+|||||...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999998864
No 378
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=86.55 E-value=0.63 Score=49.37 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=28.4
Q ss_pred CCceEEEEE-ccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 203 PDVRLVGIW-GMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 203 ~~~~vv~I~-G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
.+.++|+|+ |-||+||||+|..++..+...-..+..+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 356888887 59999999999999988766533444444
No 379
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=86.49 E-value=1.4 Score=47.65 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCceEEEEEccCCCchhHHHHHHHH
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
...++..|.|.+|.||||+..+.++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 4578999999999999999988764
No 380
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.43 E-value=0.4 Score=46.13 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
....|.|.|.+|+|||||...+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998874
No 381
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.42 E-value=0.34 Score=44.98 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.3
Q ss_pred eEEEEEccCCCchhHHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999864
No 382
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.42 E-value=0.35 Score=45.39 Aligned_cols=24 Identities=25% Similarity=0.219 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999888763
No 383
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.42 E-value=0.36 Score=44.01 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.0
Q ss_pred eEEEEEccCCCchhHHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
--|+|.|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998763
No 384
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=86.41 E-value=0.36 Score=44.60 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...-|+|.|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3567889999999999999988764
No 385
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=86.35 E-value=0.36 Score=44.44 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..-|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998763
No 386
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.32 E-value=0.37 Score=45.09 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=20.9
Q ss_pred eEEEEEccCCCchhHHHHHHHHHh
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
.+.+|+|+.|.|||||+..++.-+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 388999999999999999987643
No 387
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=86.30 E-value=0.64 Score=48.84 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=28.8
Q ss_pred CCceEEEEEccCCCchhHHHHHHHHHhh--hcccceEEEe
Q 005191 203 PDVRLVGIWGMGGIGKTTIAGVVFNQFS--QKFEGKYFMA 240 (709)
Q Consensus 203 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~v~ 240 (709)
+..+++.+.|-||+||||+|..++..+. ..-..+..+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3468999999999999999999998877 4433334443
No 388
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=86.20 E-value=0.37 Score=43.80 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=20.1
Q ss_pred eEEEEEccCCCchhHHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
--|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998863
No 389
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=86.14 E-value=1.4 Score=54.82 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
....++|+|+.|.|||||++.+...
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CCcEEEEEecCCCcHHHHHHHhccc
Confidence 3569999999999999999988763
No 390
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=86.10 E-value=0.65 Score=48.51 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=29.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
..+++.+.|-||+||||+|..++..+...-..+..+.
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4678889999999999999999988776544444444
No 391
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=86.05 E-value=0.37 Score=44.39 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346789999999999999998763
No 392
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=86.02 E-value=0.4 Score=44.96 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
.--|+|.|.+|+|||||.+.+......
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 456789999999999999766654433
No 393
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=86.00 E-value=0.32 Score=44.98 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.1
Q ss_pred eEEEEEccCCCchhHHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
--|+|.|.+|+|||||...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998874
No 394
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=85.96 E-value=0.38 Score=45.19 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346789999999999999988764
No 395
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=85.92 E-value=0.39 Score=50.60 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++--
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4579999999999999999988764
No 396
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=85.90 E-value=0.48 Score=53.69 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=24.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...+|.|.|++|+||||+|+.+.+++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998864
No 397
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=85.89 E-value=0.43 Score=51.64 Aligned_cols=89 Identities=10% Similarity=0.079 Sum_probs=48.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhccc---ceEEEeeecccccccCCHHHHHHHHHHHh--cCCC--CCCCCCC-hh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFE---GKYFMANVREESEKCGGLVHLRNQVLSKL--LGEN--FDIGTPK-IP 276 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~v~~~~~~~~~~~~l~~l~~~ll~~l--~~~~--~~~~~~~-~~ 276 (709)
.+.++|.|.+|+|||+|+.++++....+.+ ..+.+..+++.. ....++.+.+...- .... ....+.. ..
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~---~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~ 227 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITF---EEAEFFMEDFRQTGAIDRSVMFMNLANDPAIE 227 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECH---HHHHHHHHHHHHHTGGGGEEEEEEETTSCHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCc---HHHHHHHHHHhhcCCccceEEEEECCCCCHHH
Confidence 345789999999999999999887554222 233333344332 23445555544321 0000 0111111 11
Q ss_pred --------HHHHHHHc---cCceEEEecCCC
Q 005191 277 --------QYIRDRLQ---RMKVFIVLDDVN 296 (709)
Q Consensus 277 --------~~l~~~L~---~kr~LLVLDdv~ 296 (709)
-.+.++++ ++.+||++||+-
T Consensus 228 r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 228 RIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 12344443 689999999993
No 398
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=85.84 E-value=0.51 Score=43.44 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...-|+|.|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567889999999999999998874
No 399
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=85.82 E-value=0.39 Score=45.31 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.2
Q ss_pred eEEEEEccCCCchhHHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..|+|.|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998863
No 400
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=85.78 E-value=0.51 Score=48.53 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=24.7
Q ss_pred hhHHHhhhhccCCCceEEEEEccCCCchhHHHHHHH
Q 005191 191 VEQVRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVF 226 (709)
Q Consensus 191 l~~L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~ 226 (709)
+++|.+.+. ..+++|.|++|+|||||.+.+.
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH
Confidence 455555554 3588999999999999999988
No 401
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=85.77 E-value=0.4 Score=44.08 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..-|+|.|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467889999999999999999864
No 402
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=85.77 E-value=0.4 Score=43.74 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..-|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998763
No 403
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=85.71 E-value=0.4 Score=45.40 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.6
Q ss_pred eEEEEEccCCCchhHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
--|+|+|.+|+|||||...+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999999999875
No 404
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.68 E-value=0.29 Score=50.48 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
...+++|+|+.|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 457999999999999999998865
No 405
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=85.59 E-value=0.47 Score=44.39 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
....|+|.|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999998764
No 406
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=85.56 E-value=0.41 Score=44.66 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999998863
No 407
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=85.54 E-value=0.39 Score=44.76 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.4
Q ss_pred EEEEEccCCCchhHHHHHHHHH
Q 005191 207 LVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
-|+|.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998763
No 408
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=85.49 E-value=0.42 Score=44.47 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.1
Q ss_pred eEEEEEccCCCchhHHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
--|+|.|.+|+|||||...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999864
No 409
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=85.42 E-value=0.64 Score=46.56 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
....|+|.|.+|+|||||...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998864
No 410
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=85.38 E-value=0.43 Score=44.32 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.0
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998864
No 411
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=85.34 E-value=0.43 Score=43.86 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.5
Q ss_pred eEEEEEccCCCchhHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
--|+|.|.+|+|||||...+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4578899999999999999875
No 412
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.29 E-value=0.38 Score=49.19 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++.-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4579999999999999999998764
No 413
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=85.27 E-value=0.44 Score=44.22 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=19.9
Q ss_pred eEEEEEccCCCchhHHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
--|+|.|.+|+|||||...+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999988763
No 414
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=85.25 E-value=0.43 Score=44.35 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998864
No 415
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=85.25 E-value=0.44 Score=50.36 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
...++|+|+.|.|||||++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999887643
No 416
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=85.13 E-value=0.44 Score=44.77 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998873
No 417
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=85.11 E-value=0.52 Score=46.17 Aligned_cols=26 Identities=12% Similarity=0.104 Sum_probs=23.4
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
..+|+|.|+.|+||||+|+.+++++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 418
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=85.09 E-value=0.45 Score=44.00 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=19.8
Q ss_pred eEEEEEccCCCchhHHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
--|+|.|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999988763
No 419
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=85.00 E-value=0.46 Score=44.06 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..-|+|.|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999998863
No 420
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=84.98 E-value=0.46 Score=44.03 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
..-|+|.|.+|+|||||...+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45788999999999999999885
No 421
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=84.98 E-value=0.56 Score=45.72 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=24.2
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
...|.+.|+.|+||||+++.+.+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999998765
No 422
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=84.95 E-value=0.47 Score=50.10 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
...+++|.|+.|.|||||.+.+.-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 457999999999999999998875
No 423
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=84.95 E-value=0.69 Score=46.52 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
....|++.|.+|+|||||...+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998864
No 424
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=84.94 E-value=0.46 Score=43.86 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..-|+|.|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998864
No 425
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=84.91 E-value=0.35 Score=45.95 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=19.9
Q ss_pred CceEEEEEccCCCchhHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVF 226 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~ 226 (709)
..--|+|.|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 34678899999999999999885
No 426
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=84.86 E-value=0.4 Score=45.65 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=19.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
..-|+|.|.+|+|||||...+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999998864
No 427
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.82 E-value=0.46 Score=44.84 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998864
No 428
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=84.82 E-value=0.48 Score=43.61 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=20.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
..--|+|.|.+|+|||||...+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 356788999999999999998865
No 429
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.78 E-value=0.49 Score=44.47 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346789999999999999998874
No 430
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.78 E-value=0.47 Score=43.74 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999998763
No 431
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=84.77 E-value=0.48 Score=49.98 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 4578999999999999999988764
No 432
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=84.73 E-value=0.48 Score=50.31 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++--
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcC
Confidence 4578999999999999999988764
No 433
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=84.71 E-value=1.2 Score=47.48 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=23.8
Q ss_pred CCceEEEEE-ccCCCchhHHHHHHHHHhhh
Q 005191 203 PDVRLVGIW-GMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 203 ~~~~vv~I~-G~gGiGKTtLA~~v~~~~~~ 231 (709)
...++|+|+ |-||+||||+|..++..+..
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~ 135 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRA 135 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 346777776 88999999999999987763
No 434
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=84.71 E-value=1.2 Score=45.66 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=28.6
Q ss_pred CCceEEEEEcc-CCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 203 PDVRLVGIWGM-GGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 203 ~~~~vv~I~G~-gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
...++|.|+|. ||+||||+|..++..+...-..+..+.
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 34688999886 899999999999988766533444444
No 435
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=84.65 E-value=0.46 Score=50.04 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|+|||||.+.++--
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3568999999999999999988764
No 436
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=84.64 E-value=0.49 Score=49.97 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4578999999999999999988764
No 437
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=84.63 E-value=0.48 Score=44.51 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999874
No 438
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=84.57 E-value=0.48 Score=44.86 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..-|+|.|.+|+|||||...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457889999999999999998763
No 439
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=84.50 E-value=0.49 Score=44.93 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...-|+|.|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3567889999999999999998764
No 440
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=84.46 E-value=0.64 Score=47.36 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=24.9
Q ss_pred ceEEEEEc---cCCCchhHHHHHHHHHhhhcccceEEE
Q 005191 205 VRLVGIWG---MGGIGKTTIAGVVFNQFSQKFEGKYFM 239 (709)
Q Consensus 205 ~~vv~I~G---~gGiGKTtLA~~v~~~~~~~f~~~~~v 239 (709)
.++++|++ -||+||||+|..++..+...-..+..+
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 35666665 999999999999998776543333333
No 441
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.41 E-value=0.49 Score=45.23 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..-|+|.|.+|+|||||...+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457889999999999999998764
No 442
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=84.33 E-value=0.5 Score=45.33 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999874
No 443
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=84.30 E-value=0.5 Score=44.86 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...-|+|.|.+|+|||||...+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3457889999999999999998874
No 444
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=84.29 E-value=0.34 Score=46.25 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=20.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
....++|.|.+|+|||||...+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999988764
No 445
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=84.25 E-value=0.52 Score=49.96 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++--
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4579999999999999999988764
No 446
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=84.24 E-value=0.51 Score=44.43 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999864
No 447
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=84.16 E-value=0.51 Score=45.21 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999998864
No 448
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=84.13 E-value=0.52 Score=44.18 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346789999999999999999863
No 449
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=84.09 E-value=0.52 Score=44.33 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999998874
No 450
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=84.04 E-value=0.69 Score=50.28 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=48.4
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcc---cceEEEeeecccccccCCHHHHHHHHHHHhcCCC----CCCCCCCh--
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKF---EGKYFMANVREESEKCGGLVHLRNQVLSKLLGEN----FDIGTPKI-- 275 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f---~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~----~~~~~~~~-- 275 (709)
.+.++|.|.+|+|||+|+..+++....+. +..+.+..+++.. ....++.+.+...-.... ....+...
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~---~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~ 228 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITN---EEAQYFMSDFEKTGALERAVVFLNLADDPAVE 228 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECH---HHHHHHHHHHHHHSGGGGEEEEEEETTSCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCc---HHHHHHHHHHHhccCccceEEEEECCCCCHHH
Confidence 45677889999999999999998754322 1233333344332 234555555544310000 01111111
Q ss_pred -------hHHHHHHHc---cCceEEEecCC
Q 005191 276 -------PQYIRDRLQ---RMKVFIVLDDV 295 (709)
Q Consensus 276 -------~~~l~~~L~---~kr~LLVLDdv 295 (709)
.-.+.++++ ++.+||++||+
T Consensus 229 r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 229 RIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 112334443 68999999997
No 451
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.03 E-value=0.52 Score=44.31 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCchhHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
.--|+|.|.+|+|||||...+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 45688999999999999999876
No 452
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=84.01 E-value=0.44 Score=50.03 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++--
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcC
Confidence 4568999999999999999988764
No 453
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=83.96 E-value=0.54 Score=44.04 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998764
No 454
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=83.89 E-value=0.54 Score=44.16 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999998763
No 455
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=83.85 E-value=0.51 Score=45.70 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
.--|+|.|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35688999999999999998874
No 456
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=83.81 E-value=0.55 Score=44.06 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457889999999999999998874
No 457
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=83.81 E-value=0.52 Score=50.00 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 3468999999999999999988764
No 458
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=83.68 E-value=0.56 Score=43.91 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..-|+|.|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999998763
No 459
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=83.68 E-value=0.55 Score=45.69 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.7
Q ss_pred EEEEEccCCCchhHHHHHHHH
Q 005191 207 LVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~ 227 (709)
-|.|.|.+|+|||+|...+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 477899999999999999876
No 460
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=83.67 E-value=1.4 Score=44.31 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=28.7
Q ss_pred CCceEEEEEcc-CCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 203 PDVRLVGIWGM-GGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 203 ~~~~vv~I~G~-gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
...++|.|+|. ||+||||+|..++..+...-..+..+.
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 35688999865 899999999999988776544445544
No 461
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=83.62 E-value=0.5 Score=44.76 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998763
No 462
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=83.55 E-value=0.46 Score=44.99 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=19.7
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+.++
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456789999999999999866654
No 463
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=83.52 E-value=1 Score=43.52 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=22.1
Q ss_pred eEEEEEc-cCCCchhHHHHHHHHHhhhc
Q 005191 206 RLVGIWG-MGGIGKTTIAGVVFNQFSQK 232 (709)
Q Consensus 206 ~vv~I~G-~gGiGKTtLA~~v~~~~~~~ 232 (709)
++|.|.| -||+||||+|..++..+..+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~ 29 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAA 29 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4677776 48999999999999877655
No 464
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=83.47 E-value=0.57 Score=44.36 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=21.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...-|+|.|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3567889999999999999998763
No 465
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=83.42 E-value=0.5 Score=48.57 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=18.5
Q ss_pred EEEEEccCCCchhHHHHHHHH
Q 005191 207 LVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 207 vv~I~G~gGiGKTtLA~~v~~ 227 (709)
-|+|.|.+|+|||||...++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 458999999999999999764
No 466
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=83.42 E-value=0.58 Score=43.77 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999999864
No 467
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=83.41 E-value=0.99 Score=50.23 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=27.8
Q ss_pred HHhhhhccCCCceEEEEEccCCCchhHHHHHHHHHhhh
Q 005191 194 VRSLLAIGLPDVRLVGIWGMGGIGKTTIAGVVFNQFSQ 231 (709)
Q Consensus 194 L~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 231 (709)
+...|..+-....+++|.|++|+|||||+..++.....
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 33444332234579999999999999999999886544
No 468
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.32 E-value=0.43 Score=44.23 Aligned_cols=24 Identities=33% Similarity=0.273 Sum_probs=20.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
...-|+|.|.+|+|||||...+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456788999999999999988764
No 469
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=83.21 E-value=0.42 Score=50.36 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...+++|.|+.|.|||||.+.++--
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578999999999999999988764
No 470
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=83.16 E-value=0.59 Score=44.42 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..-|+|.|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998763
No 471
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=83.14 E-value=0.95 Score=48.96 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=21.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhh
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFS 230 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 230 (709)
.+.++|.|.+|+|||+|+.++++...
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHH
Confidence 45678999999999999999988654
No 472
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=83.09 E-value=0.61 Score=49.75 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=26.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
...+++|.|+.|+|||||.+.++--.. ....+++.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~ 80 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQID 80 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEES
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEEC
Confidence 457999999999999999999886432 34455553
No 473
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.08 E-value=1 Score=48.58 Aligned_cols=85 Identities=12% Similarity=0.109 Sum_probs=47.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe-eecccccccCCHHHHHHHHHHHhcCCCCCCCCCChhHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA-NVREESEKCGGLVHLRNQVLSKLLGENFDIGTPKIPQYIRDR 282 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~-~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~l~~~ 282 (709)
...+++|+|+.|.|||||...+...+... ...+++. ..-+... ... .+.. ............++..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~~ed~ie~~~--~~~--------~q~~--v~~~~g~~f~~~lr~~ 232 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILTVEDPIEFDI--DGI--------GQTQ--VNPRVDMTFARGLRAI 232 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEEEESSCCSCC--SSS--------EEEE--CBGGGTBCHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEEecccchhcc--CCc--------ceEE--EccccCcCHHHHHHHH
Confidence 45689999999999999999998876543 3333332 1110000 000 0000 0000011145567777
Q ss_pred HccCceEEEecCCCChhhh
Q 005191 283 LQRMKVFIVLDDVNKYGQL 301 (709)
Q Consensus 283 L~~kr~LLVLDdv~~~~~~ 301 (709)
++..+-++++.++.+....
T Consensus 233 Lrq~pd~i~vgEiRd~et~ 251 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETA 251 (418)
T ss_dssp GGGCCSEEEESCCCSHHHH
T ss_pred hccCCCeEEEcCcCCHHHH
Confidence 7777888888888765433
No 474
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=83.00 E-value=0.63 Score=47.76 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.9
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
....|+|+|.+|+|||||...+...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 4678999999999999999998753
No 475
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=82.96 E-value=0.54 Score=43.73 Aligned_cols=24 Identities=33% Similarity=0.195 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999998763
No 476
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=82.84 E-value=0.57 Score=44.24 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=19.9
Q ss_pred ceEEEEEccCCCchhHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
.--|+|.|.+|+|||||...+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999998864
No 477
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=82.81 E-value=0.6 Score=43.60 Aligned_cols=24 Identities=33% Similarity=0.198 Sum_probs=21.0
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
...-|+|.|.+|+|||||...+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456788999999999999999885
No 478
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=82.79 E-value=0.63 Score=43.69 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999864
No 479
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=82.79 E-value=0.6 Score=44.13 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=20.0
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999988753
No 480
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=82.78 E-value=0.71 Score=45.34 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567899999999999999998863
No 481
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=82.77 E-value=0.63 Score=44.49 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999988763
No 482
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=82.76 E-value=1.2 Score=46.27 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=27.8
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
..+++...|-||+||||+|..++..+...-..+..++
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3567778899999999999999988776533344443
No 483
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=82.74 E-value=1.1 Score=49.08 Aligned_cols=55 Identities=20% Similarity=0.122 Sum_probs=32.4
Q ss_pred CceEEEEEccCCCchhHHHH-HHHHHhhh------cccceEEEeeecccccccCCHHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAG-VVFNQFSQ------KFEGKYFMANVREESEKCGGLVHLRNQVLS 261 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~-~v~~~~~~------~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~ 261 (709)
..+.++|.|.+|+|||+||. .+++.... +-+..+.+..+++... ...++.+.+..
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~---Ev~~~~~~~~~ 222 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRS---TVAQLVKRLTD 222 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHH---HHHHHHHHHHH
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcH---HHHHHHHHHHh
Confidence 34677899999999999964 66665542 2344444444444322 24444444443
No 484
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=82.72 E-value=0.56 Score=44.27 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=22.8
Q ss_pred EEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 208 VGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 208 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
+.|+|.+|.|||++|.+++.. . ...+|+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~---~-~~~~yia 30 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD---A-PQVLYIA 30 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS---C-SSEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhc---C-CCeEEEe
Confidence 679999999999999999865 1 2355655
No 485
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.70 E-value=0.63 Score=44.39 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.2
Q ss_pred eEEEEEccCCCchhHHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.-|+|.|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999988763
No 486
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=82.67 E-value=0.81 Score=45.53 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=27.2
Q ss_pred CceEEEEE-ccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 204 DVRLVGIW-GMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 204 ~~~vv~I~-G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
..++|+|+ +-||+||||+|..++..+...-..+..+.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 45788886 78899999999999998766533334443
No 487
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=82.64 E-value=0.71 Score=43.37 Aligned_cols=24 Identities=33% Similarity=0.284 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
....|+|.|.+|+|||||...+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457889999999999999998876
No 488
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=82.57 E-value=3.2 Score=45.32 Aligned_cols=88 Identities=15% Similarity=0.081 Sum_probs=46.7
Q ss_pred CceEEEEEccCCCchhHHHH-HHHHHhhhcccceEEEeeecccccccCCHHHHHHHHHHHhcCCCC----CCCCCC-hhH
Q 005191 204 DVRLVGIWGMGGIGKTTIAG-VVFNQFSQKFEGKYFMANVREESEKCGGLVHLRNQVLSKLLGENF----DIGTPK-IPQ 277 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~-~v~~~~~~~f~~~~~v~~~~~~~~~~~~l~~l~~~ll~~l~~~~~----~~~~~~-~~~ 277 (709)
..+.++|.|.+|+|||+||. .+++.. +-+..+.+..+++.. ....++.+.+...-..... ...++. ..+
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~--~~dv~~V~~~iGeR~---~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r 235 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQK--GQDVICIYVAIGQKQ---STVAGVVETLRQHDALDYTIVVTASASEPAPLL 235 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGG--SCSEEEEEEEESCCH---HHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhh--cCCcEEEEEECCCcc---hHHHHHHHHHhhCCCcceeEEEEECCCCCHHHH
Confidence 34678899999999999965 666654 234343444444332 2244455554432111000 111111 111
Q ss_pred --------HHHHHH--ccCceEEEecCCC
Q 005191 278 --------YIRDRL--QRMKVFIVLDDVN 296 (709)
Q Consensus 278 --------~l~~~L--~~kr~LLVLDdv~ 296 (709)
.+.+++ +++.+||++||+-
T Consensus 236 ~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 236 YLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 223333 4689999999983
No 489
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=82.51 E-value=0.6 Score=43.47 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...-|+|.|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998763
No 490
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=82.48 E-value=0.62 Score=44.21 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=20.6
Q ss_pred CceEEEEEccCCCchhHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
..--|+|.|.+|+|||||...+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 345688999999999999999875
No 491
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.43 E-value=0.66 Score=44.20 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
..-|+|.|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457889999999999999998863
No 492
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=82.43 E-value=1 Score=43.30 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHh
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQF 229 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 229 (709)
...+|+|+|++|+||+++|..+.+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45799999999999999998886654
No 493
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=82.41 E-value=1 Score=50.80 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=27.7
Q ss_pred CceEEEEEccCCCchhHHHHHHHHHhhhcccceEEE
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFM 239 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v 239 (709)
..+++.+.|.||+||||+|..++..+...-..+..+
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlv 42 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLV 42 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEE
Confidence 457888999999999999999998776553333443
No 494
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=82.37 E-value=0.63 Score=44.77 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.2
Q ss_pred ceEEEEEccCCCchhHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
.--|+|.|.+|+|||||...+..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45688999999999999999875
No 495
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=82.35 E-value=0.67 Score=44.08 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.--|+|.|.+|+|||||...+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 456889999999999999998763
No 496
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=82.28 E-value=0.55 Score=49.62 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=26.4
Q ss_pred ceEEEEEccCCCchhHHHHHHHHHhhhcccceEEEe
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQFSQKFEGKYFMA 240 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~v~ 240 (709)
...++|+|+.|.|||||++.+...+.. ....+.+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie 209 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIE 209 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEEC
Confidence 458999999999999999999876543 23444444
No 497
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=82.27 E-value=0.68 Score=43.96 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.2
Q ss_pred eEEEEEccCCCchhHHHHHHHHH
Q 005191 206 RLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 206 ~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
.-|+|.|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999998863
No 498
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=82.15 E-value=0.8 Score=44.50 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCchhHHHHHHHHH
Q 005191 204 DVRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 204 ~~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
....|+|.|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998763
No 499
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=82.12 E-value=0.73 Score=47.30 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCchhHHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFNQ 228 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~~ 228 (709)
...|+|.|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999998764
No 500
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=81.97 E-value=0.43 Score=44.27 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=10.3
Q ss_pred ceEEEEEccCCCchhHHHHHHHH
Q 005191 205 VRLVGIWGMGGIGKTTIAGVVFN 227 (709)
Q Consensus 205 ~~vv~I~G~gGiGKTtLA~~v~~ 227 (709)
..-|+|.|.+|+|||||...+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEECCCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999998875
Done!