BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005193
(709 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5YLB4|GYRB_NICBE DNA gyrase subunit B, chloroplastic/mitochondrial OS=Nicotiana
benthamiana GN=GYRB PE=2 SV=1
Length = 731
Score = 1147 bits (2967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/730 (80%), Positives = 642/730 (87%), Gaps = 25/730 (3%)
Query: 4 LLLKAPYLHIRVLMASRCFC---------SFSS------SLFFKPRTNFAIRGVSSQVLT 48
LL P H MASR SFSS S+ PR +R +S +L
Sbjct: 3 LLKPFPLQHSLRCMASRFLLHSHYHTHTLSFSSISLSRPSIVLNPRVINKLRRLSDAILI 62
Query: 49 RSNVVLPRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLH 108
R N+V RAF+SSS TEAF+EN SK YGSEQIQVLEGL+ VRKRP MYIGSTGPRGLH
Sbjct: 63 R-NMVSLRAFMSSSTTTEAFQENTKSKGYGSEQIQVLEGLDPVRKRPGMYIGSTGPRGLH 121
Query: 109 HLVYEILDNAVDEAQAGYASNIEVALLADNS---------IPIDLHPATNKSALETVLTV 159
HLVYEILDNAVDEAQAG+A+ I+V L ADNS IP +LHP T KS+LETVLTV
Sbjct: 122 HLVYEILDNAVDEAQAGFATKIDVVLHADNSVSIADNGRGIPTELHPVTKKSSLETVLTV 181
Query: 160 LHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLT 219
LHAGGKFGGSSSGY+VSGGLHGVGLSVVNALS++LEVT+WRDG EY QKYSRGKP+TTL
Sbjct: 182 LHAGGKFGGSSSGYNVSGGLHGVGLSVVNALSQALEVTIWRDGKEYQQKYSRGKPITTLI 241
Query: 220 CHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSD 279
CH LPV+ +DRQGT IRFWPDK+VFTT +QFD+NTIAGRIRELAFLNP+LTIAL+KED D
Sbjct: 242 CHDLPVEMRDRQGTAIRFWPDKEVFTTEMQFDYNTIAGRIRELAFLNPELTIALKKEDID 301
Query: 280 PEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTML 339
PEK Q NEYF+AGGL EYV+WLN DKKPLHDV+GFRK+ DGITID+ALQWCSDAYSDTML
Sbjct: 302 PEKIQCNEYFYAGGLVEYVKWLNADKKPLHDVLGFRKEADGITIDMALQWCSDAYSDTML 361
Query: 340 GYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRV 399
GYANSIRTIDGGTHI+GVKA+LTR LN+LGKKSKT+K+KDISLSGEHVREGLTC+ISV+V
Sbjct: 362 GYANSIRTIDGGTHIDGVKAALTRILNNLGKKSKTIKEKDISLSGEHVREGLTCVISVKV 421
Query: 400 PNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKR 459
PNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSL+ALKAALAAKR
Sbjct: 422 PNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLNALKAALAAKR 481
Query: 460 ARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLR 519
AR+LVRQKSVL+SSSLPGKLADCS+T PEE+EIFIVEGDSAGGSAKQGRDRRFQAILPLR
Sbjct: 482 ARELVRQKSVLKSSSLPGKLADCSATNPEEAEIFIVEGDSAGGSAKQGRDRRFQAILPLR 541
Query: 520 GKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIR 579
GKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIR
Sbjct: 542 GKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKEALRYHKIIILTDADVDGAHIR 601
Query: 580 TLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSI 639
TLLLTFF+RYQ+ LF+EGCIYVGVPPLYKVERGKQV YCYDDAELKKV+ SFPSNA Y+I
Sbjct: 602 TLLLTFFFRYQRALFEEGCIYVGVPPLYKVERGKQVYYCYDDAELKKVQRSFPSNASYNI 661
Query: 640 QRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAA 699
QRFKGLGEMMP QLWETT+NPE R+LKQLV+EDAAEANVVFSSLMG+RVD RK+LIQN+A
Sbjct: 662 QRFKGLGEMMPAQLWETTMNPETRLLKQLVVEDAAEANVVFSSLMGSRVDIRKQLIQNSA 721
Query: 700 NLVNLDHLDI 709
+++NL+ LDI
Sbjct: 722 SMMNLEQLDI 731
>sp|Q94BZ7|GYRBM_ARATH DNA gyrase subunit B, mitochondrial OS=Arabidopsis thaliana
GN=GYRBM PE=2 SV=1
Length = 732
Score = 1104 bits (2855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/685 (80%), Positives = 608/685 (88%), Gaps = 14/685 (2%)
Query: 34 RTNFAIRGVSSQVLTRSNVVLPRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRK 93
R F + V SQ L + N + R FLS TEA +E SK Y SEQIQVLEGL+ VRK
Sbjct: 53 RLKFQLTSVLSQRLIQRNAISSR-FLS----TEASQETTTSKGYSSEQIQVLEGLDPVRK 107
Query: 94 RPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS---------IPIDL 144
RP MYIGSTG RGLHHLVYEILDNA+DEAQAGYAS ++V L AD S IP DL
Sbjct: 108 RPGMYIGSTGSRGLHHLVYEILDNAIDEAQAGYASKVDVVLHADGSVSVVDNGRGIPTDL 167
Query: 145 HPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGME 204
HPAT KS+LETVLTVLHAGGKFGG+SSGYSVSGGLHGVGLSVVNALSE+LEV+VWRDGME
Sbjct: 168 HPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGLSVVNALSEALEVSVWRDGME 227
Query: 205 YHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAF 264
+ Q YSRGKP+TTLTC VLP++SK +GT IRFWPDK+VFTTAI+FDHNTIAGRIRELAF
Sbjct: 228 HKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEVFTTAIEFDHNTIAGRIRELAF 287
Query: 265 LNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITID 324
LNPK+TI+L+KED DPEK QY+EY FAGGL EYV WLNTDK P+HDV+GFR++++G T+D
Sbjct: 288 LNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTDKNPIHDVLGFRREINGATVD 347
Query: 325 LALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 384
+ALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN+L KKSKTVK+KDISLSG
Sbjct: 348 VALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSG 407
Query: 385 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSIL 444
EHVREGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTE+LELHPD+L+SI+
Sbjct: 408 EHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEFLELHPDILESII 467
Query: 445 SKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSA 504
SKSL+A KAALAAKRAR+LVR KSVL+SSSLPGKLADCSST PE SEIFIVEGDSAGGSA
Sbjct: 468 SKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPEVSEIFIVEGDSAGGSA 527
Query: 505 KQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHK 564
KQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDFKKE LRYHK
Sbjct: 528 KQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFKKENLRYHK 587
Query: 565 IIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAEL 624
IIILTDADVDGAHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KVERGK QYCYDDA+L
Sbjct: 588 IIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDADL 647
Query: 625 KKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLM 684
KK+ S+FP+NA Y+IQRFKGLGEMMP QLWETT+NPE R+LKQLV++D AEAN+ FSSLM
Sbjct: 648 KKITSNFPANASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSSLM 707
Query: 685 GARVDTRKELIQNAANLVNLDHLDI 709
GARVD RKELI+NAA +NL LDI
Sbjct: 708 GARVDVRKELIKNAATRINLQRLDI 732
>sp|Q9SS38|GYRBP_ARATH DNA gyrase subunit B, chloroplastic OS=Arabidopsis thaliana
GN=GYRBC PE=2 SV=3
Length = 730
Score = 1085 bits (2806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/686 (79%), Positives = 612/686 (89%), Gaps = 11/686 (1%)
Query: 33 PRTNFAIRGVSSQVLTRSNVVLPRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVR 92
PR F + V SQ L + N V P++F+SS++ E+ +E+ SK Y SE IQVLEGL+ VR
Sbjct: 47 PRIKFQLANVFSQRLVQRNAVSPKSFMSSTM--ESLQESSTSKDYSSEHIQVLEGLDPVR 104
Query: 93 KRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS---------IPID 143
KRP MYIGSTG RGLHHLVYEILDNA+DEAQAG+AS I+V L +D+S IP D
Sbjct: 105 KRPGMYIGSTGSRGLHHLVYEILDNAIDEAQAGFASKIDVVLHSDDSVSISDNGRGIPTD 164
Query: 144 LHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGM 203
LHPAT KS+LETVLTVLHAGGKFGG SSGYSVSGGLHGVGLSVVNALSE+LEV V RDGM
Sbjct: 165 LHPATGKSSLETVLTVLHAGGKFGGKSSGYSVSGGLHGVGLSVVNALSEALEVIVRRDGM 224
Query: 204 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELA 263
E+ QKYSRGKPVTTLTCHVLP +S+ QGT IRFWPDK+VFTTAIQFDHNTIAGRIRELA
Sbjct: 225 EFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEVFTTAIQFDHNTIAGRIRELA 284
Query: 264 FLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITI 323
FLNPK+TI+L+KED DPE++ Y+EYF+AGGL EYV WLNTDKKPLHDV+GFRK+++G T+
Sbjct: 285 FLNPKVTISLKKEDDDPERDVYSEYFYAGGLTEYVSWLNTDKKPLHDVLGFRKEINGSTV 344
Query: 324 DLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 383
D++LQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSL KK K +K+KDISLS
Sbjct: 345 DVSLQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLS 404
Query: 384 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSI 443
GEHVREGLTCI+SV+VPNPEFEGQTKTRLGNPEVRK+VDQSVQEYLTEYLELHPDVL+SI
Sbjct: 405 GEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESI 464
Query: 444 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGS 503
+SKSL+A KAALAAKRAR+LVR KSVL+SSSLPGKLADCSST P ESEIFIVEGDSAGGS
Sbjct: 465 ISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGS 524
Query: 504 AKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYH 563
AKQGRDRRFQAILPLRGKILN+ERKDEAAMYKNEEIQNLI LGLGVKGEDF KE LRYH
Sbjct: 525 AKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYH 584
Query: 564 KIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAE 623
KIIILTDADVDGAHIRTLLLTFF+RYQ+ LFD GCIYVGVPPL+KVERGKQ YCYDDA
Sbjct: 585 KIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAA 644
Query: 624 LKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 683
LKK+ +SFP NA Y+IQRFKGLGEMMP QLWETT+NP+ R+LKQLV++DAAE N+VFSSL
Sbjct: 645 LKKITASFPGNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVVDDAAETNMVFSSL 704
Query: 684 MGARVDTRKELIQNAANLVNLDHLDI 709
MGARVD RKELI++AA +NL++LDI
Sbjct: 705 MGARVDVRKELIKSAATRMNLENLDI 730
>sp|Q5NBJ3|GYRB_ORYSJ DNA gyrase subunit B, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=GYRB PE=2 SV=1
Length = 729
Score = 1042 bits (2694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/668 (77%), Positives = 589/668 (88%), Gaps = 10/668 (1%)
Query: 51 NVVLPRAFLSSSIATEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHL 110
N V RAF++S+ A+EA +E V+ Y + +QVLE L+ VR RP MYIGSTG RGLHHL
Sbjct: 63 NGVAVRAFMASTAASEAMQEKRVAGEYTAANVQVLEALDGVRTRPGMYIGSTGSRGLHHL 122
Query: 111 VYEILDNAVDEAQAGYASNIEVALLADNS---------IPIDLHPATNKSALETVLTVLH 161
VYEILDNAVDEAQAGYA+ ++V L DNS IP D+HP T KS +ETVLT++H
Sbjct: 123 VYEILDNAVDEAQAGYATKVDVILHGDNSVSVTDNGRGIPTDIHPQTKKSCVETVLTLMH 182
Query: 162 AGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCH 221
AGGKFGGS SGY+VSGGLHGVGLSVVNALSE+LEVTVWRDG EY Q YSRGK +T LT
Sbjct: 183 AGGKFGGSKSGYTVSGGLHGVGLSVVNALSEALEVTVWRDGKEYRQNYSRGKAITMLTSR 242
Query: 222 VLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPE 281
L +S RQGTRIRFWPDK +FTT + FD NTIAGRIRELAFLNP+LTIAL KE+ D +
Sbjct: 243 TLSDESSSRQGTRIRFWPDKHIFTTTMDFDFNTIAGRIRELAFLNPELTIALTKEEDDLQ 302
Query: 282 KNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGY 341
Q+NEY +AGGL EYV+WLNTDKK LHD + FRK++DGIT+D++LQWCSD+YSDT+LGY
Sbjct: 303 V-QHNEYCYAGGLVEYVKWLNTDKKSLHDPIAFRKEMDGITVDVSLQWCSDSYSDTVLGY 361
Query: 342 ANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPN 401
ANSIRTIDGGTHI+G+K SLTRT+N+ KKSKT+KDKDISLSGEHVREG+TCII+V+VPN
Sbjct: 362 ANSIRTIDGGTHIDGLKTSLTRTINNFAKKSKTLKDKDISLSGEHVREGMTCIIAVKVPN 421
Query: 402 PEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRAR 461
PEFEGQTKTRLGNPEVR++V+QSVQE LTEYLELHPDVLDSILSKSL+ALKAALAAKRAR
Sbjct: 422 PEFEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRAR 481
Query: 462 DLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGK 521
+LVR KSVL+SSSLPGKLADC+S+ PEESEIFIVEGDSAGGSAKQGRDR+FQAILPLRGK
Sbjct: 482 ELVRTKSVLKSSSLPGKLADCASSDPEESEIFIVEGDSAGGSAKQGRDRKFQAILPLRGK 541
Query: 522 ILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTL 581
ILN+ER+DEAA+YKNEEIQNLI ALGLGVKGEDF KEALRYHKI+ILTDADVDGAHIRTL
Sbjct: 542 ILNIERRDEAALYKNEEIQNLIVALGLGVKGEDFNKEALRYHKIVILTDADVDGAHIRTL 601
Query: 582 LLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQR 641
LLTFF+RYQK LFDEGCIYVGVPPLYKVERGKQ YCYDDA+LK++ ++FP+NA Y IQR
Sbjct: 602 LLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKELVNTFPTNASYHIQR 661
Query: 642 FKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANL 701
FKGLGEMMP QLWETT++PE+RMLKQL +EDAAEANVVFSSLMG RVD RK+LIQNAA++
Sbjct: 662 FKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSLMGTRVDVRKQLIQNAASM 721
Query: 702 VNLDHLDI 709
VNL+HLDI
Sbjct: 722 VNLEHLDI 729
>sp|P77993|GYRB_THEMA DNA gyrase subunit B OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=gyrB PE=3 SV=2
Length = 636
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/650 (51%), Positives = 452/650 (69%), Gaps = 34/650 (5%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y +E I+VL+GLE VR RP MYIGSTG RGLHHLVYE++DN+VDEA AGY I V L
Sbjct: 4 YSAESIKVLKGLEPVRMRPGMYIGSTGKRGLHHLVYEVVDNSVDEALAGYCDWIRVTLHE 63
Query: 137 DNS---------IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 187
D S IP+D+HP +SALE V TVLHAGGKF S Y +SGGLHGVG+SVV
Sbjct: 64 DGSVEVEDNGRGIPVDIHPEEGRSALEVVFTVLHAGGKF--SKDSYKISGGLHGVGVSVV 121
Query: 188 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 247
NALSE LEV V RDG Y Q+Y RGKPVT + + D+ GT +RF PD +F+
Sbjct: 122 NALSEWLEVRVHRDGKIYRQRYERGKPVTPVEV----IGETDKHGTIVRFKPDPLIFSET 177
Query: 248 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 307
+FD + + R+RE+AFL P L I E D + + F GG+ EYV++LN KK
Sbjct: 178 -EFDPDILEHRLREIAFLVPGLKI----EFEDRINGEKKTFKFDGGIVEYVKYLNRGKKA 232
Query: 308 LHDVVGFRKDV--------DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 359
LHDV+ ++ D + +++A Q+ +D+YS+ ++ +AN+I+T+DGGTH+ K+
Sbjct: 233 LHDVIHIKRTEKVKTKNGEDEVIVEIAFQY-TDSYSEDIVSFANTIKTVDGGTHVTAFKS 291
Query: 360 SLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRK 419
+LTR +N GKK +K KD S GE VREGLT +ISV V NPEFEGQTK++LGN EV++
Sbjct: 292 TLTRLMNEYGKKHNFLK-KDDSFQGEDVREGLTAVISVYVKNPEFEGQTKSKLGNEEVKE 350
Query: 420 VVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKL 479
V ++++E L + + +P+++ +ILSK +S +A AAKRAR++VR+K+VL++++LPGKL
Sbjct: 351 AVTKAMREELKKIFDANPELVKTILSKIMSTKQAREAAKRAREMVRRKNVLQNTTLPGKL 410
Query: 480 ADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEI 539
ADCSST E++E+FIVEGDSAGGSAKQ RDR FQA+LP+RGKILNVE+ + KNE+I
Sbjct: 411 ADCSSTHREKTELFIVEGDSAGGSAKQARDREFQAVLPIRGKILNVEKSSLDRLLKNEQI 470
Query: 540 QNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCI 599
++I A+G G+ G+DF + LRY +III+TDAD+DGAHIRTLLLT FYRY + L ++G +
Sbjct: 471 SDIIVAVGTGI-GDDFDESKLRYGRIIIMTDADIDGAHIRTLLLTLFYRYMRPLIEQGRV 529
Query: 600 YVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLN 659
Y+ +PPLY+++ G++ Y Y D EL + K + IQR+KGLGEM P QLWETT+N
Sbjct: 530 YIALPPLYRIKAGREEFYVYSDQELAEYKEKLQGKRI-EIQRYKGLGEMNPEQLWETTMN 588
Query: 660 PEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 709
PE R + ++ IEDA EA+ +F LMG +R+E I+ A + + LDI
Sbjct: 589 PETRKIIRVTIEDAEEADRLFEILMGNDPSSRREFIERHA--LKVKELDI 636
>sp|P94604|GYRB_CLOAB DNA gyrase subunit B OS=Clostridium acetobutylicum (strain ATCC 824
/ DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gyrB
PE=3 SV=2
Length = 637
Score = 634 bits (1636), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/646 (51%), Positives = 447/646 (69%), Gaps = 28/646 (4%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
++ Y QIQVLEGLEAVRKRP MYIGSTG RGLHHLVYEI+DN++DEA AGY S+I+V
Sbjct: 5 NEIYDESQIQVLEGLEAVRKRPGMYIGSTGTRGLHHLVYEIVDNSIDEALAGYCSHIKVF 64
Query: 134 LLADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 184
+ DNS+ PI +H K +E ++T+LHAGGKFGG + Y VSGGLHGVG
Sbjct: 65 IHKDNSVTVSDDGRGMPIGIHHKMKKPTVEVIMTILHAGGKFGGGA--YRVSGGLHGVGA 122
Query: 185 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 244
SVVNALSE+ EV V +G + Q Y RGK + + D GT+I F PD ++F
Sbjct: 123 SVVNALSETCEVEVKTEGHIWKQTYHRGKVASPFE----KIGDSDEHGTKIYFKPDPEIF 178
Query: 245 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYF-FAGGLEEYVQWLNT 303
++D++T++ R+RELAFLN + I L E D NE F + GGL+ +V +LN
Sbjct: 179 EDT-EYDYDTLSQRLRELAFLNKGIKIELTDERHDK-----NEIFHYEGGLKSFVSYLNR 232
Query: 304 DKKPL-HDVVGFRKDVD-GITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASL 361
+K+ + + + +D ++++ALQ+ +D Y++ + +AN+I TI+GGTH+ G K +L
Sbjct: 233 NKEVVFKEPIYVEGSIDSNYSVEIALQY-NDGYNENIFSFANNIHTIEGGTHLAGFKTAL 291
Query: 362 TRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 421
TR +N KK +K+ D +LSGE +REGLT ++SV++ P+FEGQTKT+LGN EVR +V
Sbjct: 292 TRVINDYAKKFGYLKENDKNLSGEDIREGLTAVVSVKLTEPQFEGQTKTKLGNTEVRGIV 351
Query: 422 DQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLAD 481
D + E ++ YLE +P + ++ K+L A +A AAK+AR++ R+KSVL S+SLPGKLAD
Sbjct: 352 DSIISERVSTYLEENPQIGKLVIDKALVASRAREAAKKAREITRRKSVLESTSLPGKLAD 411
Query: 482 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 541
CSS EE EI+IVEGDSAGGSAKQGR+RRFQAILPLRGKI+NVE++ + +EEI+
Sbjct: 412 CSSKDAEECEIYIVEGDSAGGSAKQGRNRRFQAILPLRGKIMNVEKQRIDKILNSEEIKA 471
Query: 542 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 601
+ A G G+ G+DF LRYHKIII+TDADVDGAHIRTL+LTFFYRY L EG +++
Sbjct: 472 MATAFGGGI-GKDFDVSKLRYHKIIIMTDADVDGAHIRTLILTFFYRYMTELISEGHVFI 530
Query: 602 GVPPLYKVERGKQVQYCYDDAELKKV-KSSFPSNALYSIQRFKGLGEMMPVQLWETTLNP 660
PPLYKV + ++ Y Y D EL+ V + + IQR+KGLGEM P QLWETT+NP
Sbjct: 531 AQPPLYKVTKTRKEYYAYSDKELEDVLQDVGGKDKNTDIQRYKGLGEMNPEQLWETTMNP 590
Query: 661 EQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 705
EQR L ++ IEDA A+ +F+ LMG +VD R++ I +NA +VNLD
Sbjct: 591 EQRTLIKVNIEDAMAADEIFTILMGDKVDPRRKFIEENATKVVNLD 636
>sp|P05652|GYRB_BACSU DNA gyrase subunit B OS=Bacillus subtilis (strain 168) GN=gyrB PE=3
SV=1
Length = 638
Score = 634 bits (1635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/641 (50%), Positives = 440/641 (68%), Gaps = 21/641 (3%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
+Y QIQVLEGLEAVRKRP MYIGST +GLHHLV+EI+DN++DEA AGY ++I + +
Sbjct: 7 SYDENQIQVLEGLEAVRKRPGMYIGSTNSKGLHHLVWEIVDNSIDEALAGYCTDINIQIE 66
Query: 136 ADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 186
DNSI P+ +H + A+E ++TVLHAGGKF GS GY VSGGLHGVG SV
Sbjct: 67 KDNSITVVDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGS--GYKVSGGLHGVGASV 124
Query: 187 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 246
VNALS L+VTV RDG + Q Y RG PVT L + D GT F PD ++F+
Sbjct: 125 VNALSTELDVTVHRDGKIHRQTYKRGVPVTDLEI----IGETDHTGTTTHFVPDPEIFSE 180
Query: 247 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 306
++D++ +A R+RELAFL + I + ED + + NEY + GG++ YV++LN K+
Sbjct: 181 TTEYDYDLLANRVRELAFLTKGVNITI--EDKREGQERKNEYHYEGGIKSYVEYLNRSKE 238
Query: 307 PLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 365
+H+ + + DGIT+++ALQ+ +D+Y+ + + N+I T +GGTH G K LTR +
Sbjct: 239 VVHEEPIYIEGEKDGITVEVALQY-NDSYTSNIYSFTNNINTYEGGTHEAGFKTGLTRVI 297
Query: 366 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 425
N +K +K+ D +LSG+ VREGLT IIS++ P+P+FEGQTKT+LGN E R + D
Sbjct: 298 NDYARKKGLIKENDPNLSGDDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDTLF 357
Query: 426 QEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSST 485
+ ++ +PD I+ K L A +A +AAK+AR+L R+KS L S+LPGKLADCSS
Sbjct: 358 STAMETFMLENPDAAKKIVDKGLMAARARMAAKKARELTRRKSALEISNLPGKLADCSSK 417
Query: 486 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 545
P SE++IVEGDSAGGSAKQGRDR FQAILPLRGKILNVE+ + N E++++I A
Sbjct: 418 DPSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITA 477
Query: 546 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 605
LG G+ GEDF E RYHK++I+TDADVDGAHIRTLLLTFFYRY + + + G +Y+ PP
Sbjct: 478 LGTGI-GEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPP 536
Query: 606 LYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRML 665
LYKV++GK+V+Y Y+D EL+++ + P +QR+KGLGEM QLWETT++P R L
Sbjct: 537 LYKVQQGKRVEYAYNDKELEELLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPSSRTL 596
Query: 666 KQLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 705
Q+ +EDA +A+ F LMG +V+ R+ I+ NA + NLD
Sbjct: 597 LQVTLEDAMDADETFEMLMGDKVEPRRNFIEANARYVKNLD 637
>sp|O50627|GYRB_BACHD DNA gyrase subunit B OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=gyrB PE=3
SV=1
Length = 637
Score = 624 bits (1609), Expect = e-178, Method: Compositional matrix adjust.
Identities = 329/642 (51%), Positives = 434/642 (67%), Gaps = 22/642 (3%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AG+ I V +
Sbjct: 6 QAYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNSIDEAMAGFCDEIGVVI 65
Query: 135 LADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 185
DNSI P+ +H + A+E ++TVLHAGGKFGG S LHGVG S
Sbjct: 66 EEDNSITVTDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGG--LHGVGAS 123
Query: 186 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 245
VVNALS LEV V R+G ++QK+ RG P L + + DR GT+I F PD +FT
Sbjct: 124 VVNALSTMLEVEVHREGKVHYQKFHRGVPAADLEV----IGTTDRTGTKIHFKPDGDIFT 179
Query: 246 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 305
F+++T+A R+RELAFLN L I + E+ + +E+ + GG+ +V+ LN +
Sbjct: 180 ETTVFEYDTLASRLRELAFLNKGLRIKITDM---REEEKSDEFHYEGGIASFVEHLNRTR 236
Query: 306 KPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 364
+ LH+ + + G+ +++A+Q+ +D ++ + +AN+I T +GGTH G K LTR
Sbjct: 237 ETLHETPIHIEGEKQGVYVEIAVQY-NDGFTSNIYSFANNINTHEGGTHESGFKTGLTRV 295
Query: 365 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 424
+N +K K+ D +L+GE VREGLT IISV++P+P+FEGQTKT+LGN E R + D
Sbjct: 296 INDYARKHNLFKESDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSL 355
Query: 425 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSS 484
E+ + +L HP V ++ K L A +A AAK+AR+L R+KS L SSLPGKLADCSS
Sbjct: 356 FTEHFSRFLIEHPQVARKLVDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCSS 415
Query: 485 TTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 544
SEI+IVEGDSAGGSAKQGRDR FQAILPLRGKILNVE+ + N EI+ +I
Sbjct: 416 RDASISEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILANNEIRAIIT 475
Query: 545 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 604
ALG G+ G+DF E RYHKIII+TDADVDGAHIRTL+LTFFYRY + L + G +Y+ P
Sbjct: 476 ALGTGI-GDDFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQP 534
Query: 605 PLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRM 664
PLYKV++GK +QY Y DAEL+++ S P A IQR+KGLGEM P QLWETT++P QR
Sbjct: 535 PLYKVQQGKDIQYAYGDAELQEILSQLPDKAKPGIQRYKGLGEMNPSQLWETTMDPGQRT 594
Query: 665 LKQLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 705
+ Q+ +EDA +A+ +F LMG RV+ R++ IQ NA + NLD
Sbjct: 595 VLQVTLEDAMKADEIFEILMGDRVEPRRDFIQENARYVKNLD 636
>sp|Q8CQK4|GYRB_STAES DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC
12228) GN=gyrB PE=3 SV=1
Length = 643
Score = 617 bits (1592), Expect = e-176, Method: Compositional matrix adjust.
Identities = 334/642 (52%), Positives = 435/642 (67%), Gaps = 20/642 (3%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYAS+IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYASHIEVV 70
Query: 134 LLADN---------SIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 184
+ DN IP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 185 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 244
SVVNALS+ LEV V R+G YHQ Y +G P L + D+ GT IRF DK++F
Sbjct: 129 SVVNALSQDLEVYVHRNGTIYHQAYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIF 184
Query: 245 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 304
T +++ T+ RIRELAFLN + I L+ E E+ + + Y + GG++ YV LN +
Sbjct: 185 TETTVYNYETLQKRIRELAFLNKGIQITLKDERE--EEVREDSYHYEGGIKSYVDLLNEN 242
Query: 305 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 363
K+PLHD + + D I +++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 243 KEPLHDEPIYIHQSKDDIEVEIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 301
Query: 364 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 423
LNS G +SK +K+ LSGE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 302 VLNSYGTQSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDR 361
Query: 424 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 483
E+ +L +P V I+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCS
Sbjct: 362 LFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCS 421
Query: 484 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 543
S PEESEIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 422 SKNPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 481
Query: 544 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 603
A G G+ GE F RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 482 TAFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 540
Query: 604 PPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQR 663
PPLYK+ +GKQ Y ++D EL K+K + +SI R+KGLGEM QLWETT+NPE R
Sbjct: 541 PPLYKLTQGKQKYYVFNDRELDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHR 600
Query: 664 MLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
+ Q+ +EDA +A+ F LMG V+ R++ I++ A NLD
Sbjct: 601 SMLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYANLD 642
>sp|Q5HK03|GYRB_STAEQ DNA gyrase subunit B OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=gyrB PE=3 SV=1
Length = 643
Score = 617 bits (1592), Expect = e-176, Method: Compositional matrix adjust.
Identities = 334/642 (52%), Positives = 435/642 (67%), Gaps = 20/642 (3%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYAS+IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYASHIEVV 70
Query: 134 LLADN---------SIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 184
+ DN IP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 185 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 244
SVVNALS+ LEV V R+G YHQ Y +G P L + D+ GT IRF DK++F
Sbjct: 129 SVVNALSQDLEVYVHRNGTIYHQAYKQGVPQFDLK----EIGDTDKTGTAIRFKADKEIF 184
Query: 245 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 304
T +++ T+ RIRELAFLN + I L+ E E+ + + Y + GG++ YV LN +
Sbjct: 185 TETTVYNYETLQKRIRELAFLNKGIQITLKDERE--EEVREDSYHYEGGIKSYVDLLNEN 242
Query: 305 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 363
K+PLHD + + D I +++ALQ+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 243 KEPLHDEPIYIHQSKDDIEVEIALQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 301
Query: 364 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 423
LNS G +SK +K+ LSGE REGLT ++S++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 302 VLNSYGTQSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVDR 361
Query: 424 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 483
E+ +L +P V I+ K + A +A +AAK+AR++ R+KS L SSLPGKLADCS
Sbjct: 362 LFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADCS 421
Query: 484 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 543
S PEESEIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 422 SKNPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 481
Query: 544 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 603
A G G+ GE F RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 482 TAFGTGIGGE-FDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 540
Query: 604 PPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQR 663
PPLYK+ +GKQ Y ++D EL K+K + +SI R+KGLGEM QLWETT+NPE R
Sbjct: 541 PPLYKLTQGKQKYYVFNDRELDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHR 600
Query: 664 MLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
+ Q+ +EDA +A+ F LMG V+ R++ I++ A NLD
Sbjct: 601 SMLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYANLD 642
>sp|P0A0K7|GYRB_STAAW DNA gyrase subunit B OS=Staphylococcus aureus (strain MW2) GN=gyrB
PE=3 SV=2
Length = 644
Score = 607 bits (1565), Expect = e-172, Method: Compositional matrix adjust.
Identities = 334/642 (52%), Positives = 435/642 (67%), Gaps = 19/642 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70
Query: 134 LLADN---------SIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 184
+ DN IP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 185 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 244
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 245 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 304
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 305 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 363
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 364 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 423
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 424 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 483
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 484 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 543
S +PEE EIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 482
Query: 544 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 603
A G G+ G DF RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 483 TAFGTGIGG-DFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 541
Query: 604 PPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQR 663
PPLYK+ +GKQ Y Y+D EL K+KS +SI R+KGLGEM QLWETT+NPE R
Sbjct: 542 PPLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHR 601
Query: 664 MLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
L Q+ +EDA EA+ F LMG V+ R++ I++ A NLD
Sbjct: 602 ALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLD 643
>sp|P0A0K8|GYRB_STAAU DNA gyrase subunit B OS=Staphylococcus aureus GN=gyrB PE=1 SV=2
Length = 644
Score = 607 bits (1565), Expect = e-172, Method: Compositional matrix adjust.
Identities = 334/642 (52%), Positives = 435/642 (67%), Gaps = 19/642 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70
Query: 134 LLADN---------SIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 184
+ DN IP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 185 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 244
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 245 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 304
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 305 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 363
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 364 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 423
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 424 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 483
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 484 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 543
S +PEE EIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 482
Query: 544 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 603
A G G+ G DF RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 483 TAFGTGIGG-DFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 541
Query: 604 PPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQR 663
PPLYK+ +GKQ Y Y+D EL K+KS +SI R+KGLGEM QLWETT+NPE R
Sbjct: 542 PPLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHR 601
Query: 664 MLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
L Q+ +EDA EA+ F LMG V+ R++ I++ A NLD
Sbjct: 602 ALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLD 643
>sp|Q6GD85|GYRB_STAAS DNA gyrase subunit B OS=Staphylococcus aureus (strain MSSA476)
GN=gyrB PE=3 SV=3
Length = 644
Score = 607 bits (1565), Expect = e-172, Method: Compositional matrix adjust.
Identities = 334/642 (52%), Positives = 435/642 (67%), Gaps = 19/642 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70
Query: 134 LLADN---------SIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 184
+ DN IP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 185 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 244
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 245 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 304
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 305 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 363
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 364 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 423
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 424 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 483
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 484 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 543
S +PEE EIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 482
Query: 544 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 603
A G G+ G DF RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 483 TAFGTGIGG-DFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 541
Query: 604 PPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQR 663
PPLYK+ +GKQ Y Y+D EL K+KS +SI R+KGLGEM QLWETT+NPE R
Sbjct: 542 PPLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHR 601
Query: 664 MLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
L Q+ +EDA EA+ F LMG V+ R++ I++ A NLD
Sbjct: 602 ALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLD 643
>sp|Q2FKQ1|GYRB_STAA3 DNA gyrase subunit B OS=Staphylococcus aureus (strain USA300)
GN=gyrB PE=3 SV=3
Length = 644
Score = 607 bits (1565), Expect = e-172, Method: Compositional matrix adjust.
Identities = 334/642 (52%), Positives = 435/642 (67%), Gaps = 19/642 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70
Query: 134 LLADN---------SIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 184
+ DN IP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 185 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 244
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 245 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 304
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 305 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 363
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 364 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 423
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 424 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 483
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 484 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 543
S +PEE EIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 482
Query: 544 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 603
A G G+ G DF RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 483 TAFGTGIGG-DFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 541
Query: 604 PPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQR 663
PPLYK+ +GKQ Y Y+D EL K+KS +SI R+KGLGEM QLWETT+NPE R
Sbjct: 542 PPLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHR 601
Query: 664 MLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
L Q+ +EDA EA+ F LMG V+ R++ I++ A NLD
Sbjct: 602 ALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLD 643
>sp|P66937|GYRB_STAAN DNA gyrase subunit B OS=Staphylococcus aureus (strain N315) GN=gyrB
PE=1 SV=2
Length = 644
Score = 607 bits (1564), Expect = e-172, Method: Compositional matrix adjust.
Identities = 334/642 (52%), Positives = 435/642 (67%), Gaps = 19/642 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANKIEVV 70
Query: 134 LLADN---------SIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 184
+ DN IP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 185 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 244
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 245 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 304
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 305 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 363
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 364 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 423
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 424 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 483
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 484 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 543
S +PEE EIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 482
Query: 544 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 603
A G G+ G DF RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 483 TAFGTGIGG-DFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 541
Query: 604 PPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQR 663
PPLYK+ +GKQ Y Y+D EL K+KS +SI R+KGLGEM QLWETT+NPE R
Sbjct: 542 PPLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHR 601
Query: 664 MLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
L Q+ +EDA EA+ F LMG V+ R++ I++ A NLD
Sbjct: 602 ALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLD 643
>sp|P66936|GYRB_STAAM DNA gyrase subunit B OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=gyrB PE=1 SV=2
Length = 644
Score = 607 bits (1564), Expect = e-172, Method: Compositional matrix adjust.
Identities = 334/642 (52%), Positives = 435/642 (67%), Gaps = 19/642 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANKIEVV 70
Query: 134 LLADN---------SIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 184
+ DN IP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 185 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 244
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 245 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 304
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 305 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 363
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 364 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 423
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 424 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 483
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 484 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 543
S +PEE EIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 482
Query: 544 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 603
A G G+ G DF RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 483 TAFGTGIGG-DFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 541
Query: 604 PPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQR 663
PPLYK+ +GKQ Y Y+D EL K+KS +SI R+KGLGEM QLWETT+NPE R
Sbjct: 542 PPLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHR 601
Query: 664 MLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
L Q+ +EDA EA+ F LMG V+ R++ I++ A NLD
Sbjct: 602 ALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLD 643
>sp|Q6GKU0|GYRB_STAAR DNA gyrase subunit B OS=Staphylococcus aureus (strain MRSA252)
GN=gyrB PE=3 SV=3
Length = 644
Score = 606 bits (1563), Expect = e-172, Method: Compositional matrix adjust.
Identities = 334/642 (52%), Positives = 434/642 (67%), Gaps = 19/642 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEAVRKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70
Query: 134 LLADN---------SIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 184
+ DN IP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 185 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 244
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 245 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 304
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 305 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 363
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 364 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 423
LNS G SK +K+ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 424 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 483
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 484 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 543
S +PEE EIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 482
Query: 544 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 603
A G G+ G DF RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 483 TAFGTGIGG-DFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 541
Query: 604 PPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQR 663
PPLYK+ +GKQ Y Y+D EL K+KS +SI R+KGLGEM QLWETT+NPE R
Sbjct: 542 PPLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHR 601
Query: 664 MLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
L Q+ +EDA EA+ F LMG V+ R++ I++ A NLD
Sbjct: 602 ALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLD 643
>sp|Q5HJZ1|GYRB_STAAC DNA gyrase subunit B OS=Staphylococcus aureus (strain COL) GN=gyrB
PE=3 SV=3
Length = 644
Score = 605 bits (1560), Expect = e-172, Method: Compositional matrix adjust.
Identities = 333/642 (51%), Positives = 434/642 (67%), Gaps = 19/642 (2%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ YG+ QIQVLEGLEA RKRP MYIGST RGLHHLV+EI+DN++DEA AGYA+ IEV
Sbjct: 11 TDNYGAGQIQVLEGLEAARKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70
Query: 134 LLADN---------SIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 184
+ DN IP+D+ + A+E +LTVLHAGGKFGG S LHGVG
Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGG--LHGVGS 128
Query: 185 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 244
SVVNALS+ LEV V R+ YHQ Y +G P L V + D+ GT IRF D ++F
Sbjct: 129 SVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLK----EVGTTDKTGTVIRFKADGEIF 184
Query: 245 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 304
T +++ T+ RIRELAFLN + I LR E D E + + Y + GG++ YV+ LN +
Sbjct: 185 TETTVYNYETLQQRIRELAFLNKGIQITLRDE-RDEENVREDSYHYEGGIKSYVELLNEN 243
Query: 305 KKPLHDV-VGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 363
K+P+HD + + D I +++A+Q+ S Y+ +L YAN+I T +GGTH +G K +LTR
Sbjct: 244 KEPIHDEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTR 302
Query: 364 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 423
LNS G SK +K++ LSGE REG+T IIS++ +P+FEGQTKT+LGN EVR+VVD+
Sbjct: 303 VLNSYGLSSKIMKEEKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDK 362
Query: 424 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 483
E+ +L +P V +++ K + A +A +AAK+AR++ R+KS L +SLPGKLADCS
Sbjct: 363 LFSEHFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCS 422
Query: 484 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 543
S +PEE EIF+VEGDSAGGS K GRD R QAILPLRGKILNVE+ + N EI+ +I
Sbjct: 423 SKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMI 482
Query: 544 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 603
A G G+ G DF RYHKI+I+TDADVDGAHIRTLLLTFFYR+ + L + G +Y+
Sbjct: 483 TAFGTGIGG-DFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ 541
Query: 604 PPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQR 663
PPLYK+ +GKQ Y Y+D EL K+KS +SI R+KGLGEM QLWETT+NPE R
Sbjct: 542 PPLYKLTQGKQKYYVYNDRELDKLKSELNPTPKWSIARYKGLGEMNADQLWETTMNPEHR 601
Query: 664 MLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
L Q+ +EDA EA+ F LMG V+ R++ I++ A NLD
Sbjct: 602 ALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLD 643
>sp|Q9X3Y6|GYRB_BACAN DNA gyrase subunit B OS=Bacillus anthracis GN=gyrB PE=3 SV=2
Length = 640
Score = 597 bits (1540), Expect = e-170, Method: Compositional matrix adjust.
Identities = 325/643 (50%), Positives = 437/643 (67%), Gaps = 26/643 (4%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
+Y QIQVLEGLEAVRKRP MYIGST +GLHHLV+EI+DN++DEA AGY I V++
Sbjct: 10 SYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSIE 69
Query: 136 ADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 186
DNSI P+ + + A+E ++TVLHAGGKFGG S LHGVG SV
Sbjct: 70 EDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGG--LHGVGASV 127
Query: 187 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 246
VNALS LEV V R+G ++QKY RG PV L + D+ GT RF PD ++F
Sbjct: 128 VNALSTELEVFVHREGKIHYQKYERGIPVADLKV----IGDTDQTGTITRFKPDPEIFQE 183
Query: 247 AIQFDHNTIAGRIRELAFLNP--KLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 304
++ +T+A R+RELAFLN KLTI ++E Q E+ + GG++ YV+ LN
Sbjct: 184 TTVYEFDTLATRMRELAFLNRNIKLTIEDKRE-----HKQKKEFHYEGGIKSYVEHLNRS 238
Query: 305 KKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 363
K+P+H+ V DGI ++++LQ+ ++ Y++ + + N+I T +GGTH G K +LTR
Sbjct: 239 KQPIHEEPVYVEGSKDGIQVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTR 297
Query: 364 TLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ 423
+N G+K+ +KD D +L+GE VREGLT I+S++ PNP+FEGQTKT+LGN E R + +
Sbjct: 298 VINDYGRKNSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITES 357
Query: 424 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS 483
E ++L +P+V I+ K A +A +AAK+AR+L R+KS L SSLPGKLADCS
Sbjct: 358 VFSEAFEKFLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCS 417
Query: 484 STTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLI 543
S P SEI+IVEGDSAGGSAKQGRDR FQAILPL+GKI+NVE+ + N+E++ +I
Sbjct: 418 SKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTII 477
Query: 544 RALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 603
A+G + G DF E RYHK+II+TDADVDGAHIRTLLLTFFYRY + + + G IY+
Sbjct: 478 TAIGTNIGG-DFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQ 536
Query: 604 PPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQR 663
PPL+KV++GK++QY Y++ EL+K+ + P+ IQR+KGLGEM P QLWETT++PE R
Sbjct: 537 PPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVR 596
Query: 664 MLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 705
L Q+ ++DA EA+ F LMG +V+ R+ IQ NA + NLD
Sbjct: 597 SLLQVSLQDAIEADETFEILMGDKVEPRRNFIQENAKYVKNLD 639
>sp|D4GZ01|GYRB_HALVD DNA gyrase subunit B OS=Haloferax volcanii (strain ATCC 29605 / DSM
3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 /
DS2) GN=gyrB PE=1 SV=1
Length = 639
Score = 593 bits (1530), Expect = e-168, Method: Compositional matrix adjust.
Identities = 321/635 (50%), Positives = 430/635 (67%), Gaps = 20/635 (3%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
YG+ QIQVLEGLEAVRKRPAMYIGST RGLHHLVYE++DN++DEA AG+ IEVAL
Sbjct: 7 YGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDAIEVALHE 66
Query: 137 DNS---------IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 187
D S IP+D H ++ ALE ++TVLHAGGKF S Y VSGGLHGVG+SVV
Sbjct: 67 DGSVSVTDNGRGIPVDTHEQYDRPALEVIMTVLHAGGKFDNKS--YQVSGGLHGVGVSVV 124
Query: 188 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 247
NALS LEV V RDG + ++ G+P V ++ + GT IRFWPD +F T
Sbjct: 125 NALSSELEVEVKRDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGIFETT 184
Query: 248 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 307
+FD T+ R+RELAFLN + I+L SD ++ + + F GG+ E+V++LN K
Sbjct: 185 -EFDFKTLENRLRELAFLNSGVEISL----SDERTDESSTFLFEGGIREFVEYLNETKTA 239
Query: 308 LHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 366
LHD V+ + + +GI +++A+Q +D ++ +AN+I T +GGTH+ G K +LTR +N
Sbjct: 240 LHDDVIYYDDESEGIEVEIAMQ-ATDELQGSIHAFANNINTREGGTHLTGFKTALTRVVN 298
Query: 367 SLGKKSKTVKDKD-ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 425
+ D D +L GE VREGLT +IS++ P+P+FEGQTKT+LGN EVR +V+
Sbjct: 299 DYANTHDMLDDLDGDNLRGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRGIVESVT 358
Query: 426 QEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSST 485
+ L + E +PD +I+SK++ A +A AAK+A +L R+KS L S+SLPGKLADC S
Sbjct: 359 HQQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLPGKLADCQSR 418
Query: 486 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 545
P ESE+FIVEGDSAGGSAKQGRDR+FQAILPL+GKILNVE+ + +N+EI+ LI A
Sbjct: 419 DPAESELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRALITA 478
Query: 546 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 605
+G GV G++F E RY ++I++TDADVDGAHIRTLLLT YR+ + L + G +Y PP
Sbjct: 479 IGGGV-GDEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYAAQPP 537
Query: 606 LYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRML 665
LY+V D+AE ++ + +QRFKGLGEM P QLW+TT+NPE R+L
Sbjct: 538 LYRVRYRGNTYDAMDEAERDRIIEEECNGNPTQVQRFKGLGEMNPDQLWDTTMNPENRVL 597
Query: 666 KQLVIEDAAEANVVFSSLMGARVDTRKELIQNAAN 700
K++ +EDAA A+ +F+ LMG V RK+ I++ AN
Sbjct: 598 KRITVEDAAAADRMFNILMGDAVGPRKQFIKDHAN 632
>sp|P0DG05|GYRB_STRPQ DNA gyrase subunit B OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=gyrB PE=3 SV=1
Length = 650
Score = 591 bits (1523), Expect = e-168, Method: Compositional matrix adjust.
Identities = 311/647 (48%), Positives = 442/647 (68%), Gaps = 26/647 (4%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V +
Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFI 72
Query: 135 LADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 185
ADNSI P+D+ T + A+ETV TVLHAGGKFGG S Y VSGGLHGVG S
Sbjct: 73 EADNSITVVDDGRGIPVDIQVKTGRPAVETVFTVLHAGGKFGGGS--YKVSGGLHGVGSS 130
Query: 186 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 245
VVNALS L+V V+++G ++Q++ RG V L + + D GT + F PD ++FT
Sbjct: 131 VVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEV----IGTTDVTGTTVHFTPDPEIFT 186
Query: 246 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 305
QFD++ +A RI+ELAFLN L I++ + S E+ ++ + + GG+ YV++LN K
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKK 244
Query: 306 KPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 364
+ + + +++GI +++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR
Sbjct: 245 DVIFETPIYTDGELEGIAVEVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRV 303
Query: 365 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 424
+N KK+K +K+ + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++
Sbjct: 304 INDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRL 363
Query: 425 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSS 484
E +L +P V I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS
Sbjct: 364 FSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSS 423
Query: 485 TTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 544
++E+FIVEGDSAGGSAK GR+R FQAILP+RGKILNVE+ + NEEI++L
Sbjct: 424 NDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFT 483
Query: 545 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 604
A+G G G DF RY K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ P
Sbjct: 484 AMGTGF-GADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQP 542
Query: 605 PLYKVERGKQV-QYCY----DDAELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTL 658
P+Y V+ G ++ +Y + +LK + + ++QR+KGLGEM QLWETT+
Sbjct: 543 PIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTM 602
Query: 659 NPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
+PE R++ ++ ++DAAEA+ VF LMG RV+ R++ I+ A LD
Sbjct: 603 DPENRLMARVTVDDAAEADKVFDMLMGDRVEPRRDFIEENAVYSTLD 649
>sp|P0DG04|GYRB_STRP3 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=gyrB PE=3 SV=1
Length = 650
Score = 591 bits (1523), Expect = e-168, Method: Compositional matrix adjust.
Identities = 311/647 (48%), Positives = 442/647 (68%), Gaps = 26/647 (4%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V +
Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFI 72
Query: 135 LADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 185
ADNSI P+D+ T + A+ETV TVLHAGGKFGG S Y VSGGLHGVG S
Sbjct: 73 EADNSITVVDDGRGIPVDIQVKTGRPAVETVFTVLHAGGKFGGGS--YKVSGGLHGVGSS 130
Query: 186 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 245
VVNALS L+V V+++G ++Q++ RG V L + + D GT + F PD ++FT
Sbjct: 131 VVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEV----IGTTDVTGTTVHFTPDPEIFT 186
Query: 246 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 305
QFD++ +A RI+ELAFLN L I++ + S E+ ++ + + GG+ YV++LN K
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKK 244
Query: 306 KPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 364
+ + + +++GI +++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR
Sbjct: 245 DVIFETPIYTDGELEGIAVEVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRV 303
Query: 365 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 424
+N KK+K +K+ + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++
Sbjct: 304 INDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRL 363
Query: 425 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSS 484
E +L +P V I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS
Sbjct: 364 FSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSS 423
Query: 485 TTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 544
++E+FIVEGDSAGGSAK GR+R FQAILP+RGKILNVE+ + NEEI++L
Sbjct: 424 NDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFT 483
Query: 545 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 604
A+G G G DF RY K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ P
Sbjct: 484 AMGTGF-GADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQP 542
Query: 605 PLYKVERGKQV-QYCY----DDAELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTL 658
P+Y V+ G ++ +Y + +LK + + ++QR+KGLGEM QLWETT+
Sbjct: 543 PIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTM 602
Query: 659 NPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
+PE R++ ++ ++DAAEA+ VF LMG RV+ R++ I+ A LD
Sbjct: 603 DPENRLMARVTVDDAAEADKVFDMLMGDRVEPRRDFIEENAVYSTLD 649
>sp|P21558|GYRB_HALL2 DNA gyrase subunit B OS=Haloferax lucentense (strain DSM 14919 /
JCM 9276 / NCIMB 13854 / Aa 2.2) GN=gyrB PE=3 SV=1
Length = 639
Score = 588 bits (1516), Expect = e-167, Method: Compositional matrix adjust.
Identities = 319/635 (50%), Positives = 428/635 (67%), Gaps = 20/635 (3%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
YG+ QIQVLEGLEAVRKRPAMYIGST RGLHHLVYE++DN++DEA AG+ IEVAL
Sbjct: 7 YGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDAIEVALHE 66
Query: 137 DNS---------IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 187
D S IP+ H ++ ALE ++TVLHAGGKF S Y VSGGLHGVG++VV
Sbjct: 67 DGSVSVTDNGRGIPVGTHEQYDRPALEVIMTVLHAGGKFDNKS--YQVSGGLHGVGVTVV 124
Query: 188 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 247
NALS LEV V DG + ++ G+P V ++ + GT IRFWPD +F T
Sbjct: 125 NALSSELEVEVKHDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGIFETT 184
Query: 248 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 307
+FD T+ R+RELAFLN + I+L SD ++ + + F GG+ E+V++LN K
Sbjct: 185 -EFDFKTLENRLRELAFLNSGVEISL----SDERTDESSTFLFEGGIREFVEYLNETKTA 239
Query: 308 LHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 366
LHD V+ + + +GI +++A+Q +D ++ +AN+I T +GGTH+ G K +LTR +N
Sbjct: 240 LHDDVIYYDDESEGIEVEIAMQ-ATDELQGSIHAFANNINTREGGTHLTGFKTALTRVVN 298
Query: 367 SLGKKSKTVKDKD-ISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 425
+ D D +L GE VREGLT +ISV+ P+P+FEGQTKT+LGN EVR +V+
Sbjct: 299 DYANSHDMLDDLDGDNLRGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESVT 358
Query: 426 QEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSST 485
+ L + E +PD +I+SK++ A +A AAK+A +L R+KS L S+SLPGKLADC S
Sbjct: 359 HQQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLPGKLADCQSR 418
Query: 486 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 545
P ESE+FIVEGDSAGGSAKQGRDR+FQAILPL+GKILNVE+ + +N+EI+ LI A
Sbjct: 419 DPSESELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRALITA 478
Query: 546 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 605
+G GV G++F E RY ++I++TDADVDGAHIRTLLLT YR+ + L + G +Y PP
Sbjct: 479 IGGGV-GDEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYAAQPP 537
Query: 606 LYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRML 665
LY+V D+AE ++ + +QRFKGLGEM P QLW+TT+NPE R+L
Sbjct: 538 LYRVRYRGNTYDAMDEAERDRIIEEECNGNPTQVQRFKGLGEMNPDQLWDTTMNPENRVL 597
Query: 666 KQLVIEDAAEANVVFSSLMGARVDTRKELIQNAAN 700
K++ +EDAA A+ +F+ LMG V RK+ I++ AN
Sbjct: 598 KRITVEDAAAADRMFNILMGDAVGPRKQFIKDHAN 632
>sp|O29720|GYRB_ARCFU DNA gyrase subunit B OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=gyrB PE=3
SV=2
Length = 632
Score = 580 bits (1496), Expect = e-164, Method: Compositional matrix adjust.
Identities = 312/639 (48%), Positives = 430/639 (67%), Gaps = 27/639 (4%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y ++ I+VL+ LEAVRKRP MYIG G RGLHHL++E++DNAVDEA AGY I+V+L
Sbjct: 10 YTAKDIEVLDDLEAVRKRPGMYIGGVGVRGLHHLLWEVVDNAVDEALAGYCDTIKVSLHK 69
Query: 137 DNS---------IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 187
D S IP ++H KSALE V+T LHAGGKF S Y VSGGLHGVG+SVV
Sbjct: 70 DGSASVEDNGRGIPTEMHE-LGKSALEIVMTKLHAGGKF--SKKVYRVSGGLHGVGVSVV 126
Query: 188 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 247
NALSE LEV V R+G Y+QKY RG + GT +RF PD+++F T
Sbjct: 127 NALSEWLEVWVKRNGKIYYQKYQRGSRSPEAGHRTEVLGETKEHGTTVRFKPDREIFETT 186
Query: 248 IQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKP 307
+F + +A R++ELA+LN L I L E E+ + F G+ V+ LN ++KP
Sbjct: 187 -EFKYEIVAQRLKELAYLNRGLKIILFDEREGKEET----FHFEDGIIGLVRSLNRNRKP 241
Query: 308 LHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNS 367
LH+ + DG+++++A+Q+ +D+ + + +AN+I T +GG+H+ G +A LTR +N
Sbjct: 242 LHEPIYIETTKDGVSVEVAIQF-TDSDVENIQAFANNINTSEGGSHVVGFRAGLTRAVNE 300
Query: 368 LGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQE 427
GKK K ++G +REGLT +ISV+VP P+FEGQTKT+L N +V+ VV+ +V
Sbjct: 301 YGKKHLK---KFEPVTGVDIREGLTAVISVKVPEPQFEGQTKTKLTNSDVKTVVESAVYS 357
Query: 428 YLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTP 487
+ +LE +P +++L+K + KA AAKRA++LV++K+ L ++LPGKLADCSS P
Sbjct: 358 GVLRWLEENPAQAETLLNKFILNKKAREAAKRAKELVKRKNEL-ITTLPGKLADCSSKNP 416
Query: 488 EESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALG 547
EE E+FIVEG+SAGGSAKQ RDRRFQAILP++GKI+NVE+ A + KN+EI+ +I A+G
Sbjct: 417 EERELFIVEGESAGGSAKQARDRRFQAILPIKGKIINVEKAGMARVLKNDEIKAIISAIG 476
Query: 548 LGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLY 607
G+ G+DF RY +III+TDADVDGAHIRTLLLTFFYRY + L + G +Y+ PPLY
Sbjct: 477 AGI-GKDFDITKARYRRIIIMTDADVDGAHIRTLLLTFFYRYMRPLIESGYLYIAQPPLY 535
Query: 608 KVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQ 667
++++GK+ Y Y D ELK+ +QR+KGLGEM P QLWETT+NPE R+L Q
Sbjct: 536 QIKKGKKSYYAYSDEELKRTLEQVGGG---EVQRYKGLGEMNPQQLWETTMNPENRILIQ 592
Query: 668 LVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 705
+ +EDA A+ +FS LMG V++R+ I ++ + NLD
Sbjct: 593 VTLEDAKRADELFSILMGEDVESRRNFIMAHSKEVKNLD 631
>sp|P33769|GYRB_BORBU DNA gyrase subunit B OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=gyrB PE=3 SV=4
Length = 634
Score = 573 bits (1476), Expect = e-162, Method: Compositional matrix adjust.
Identities = 312/648 (48%), Positives = 438/648 (67%), Gaps = 34/648 (5%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y + IQVL+GLEAVRKRP MYIGS GLHHLVYE++DN++DEA AG+ I+V +
Sbjct: 2 NYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDRIDVIIN 61
Query: 136 ADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 186
DN+I P D+H SALE VLT LH+GGKF + Y VSGGLHGVG+SV
Sbjct: 62 LDNTITVIDNGRGIPTDIHEEEGISALELVLTKLHSGGKFNKGT--YKVSGGLHGVGISV 119
Query: 187 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 246
VNALS LEV V RDG + Q +S+G P T V V GT++ F D ++F T
Sbjct: 120 VNALSSFLEVYVNRDGKIFRQTFSKGIP----TSKVEVVGESSVTGTKVTFLADSEIFET 175
Query: 247 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 306
+ ++ + + R++ELAFLN K+ I++ ED K + ++++F GG++ +V +L D K
Sbjct: 176 -LDYNFDVLEKRLKELAFLNDKIYISI--EDKRIGKEKSSKFYFEGGIKSFVDYLTNDSK 232
Query: 307 PLHD----VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLT 362
+ GF DV +++ L+W +++YSD +L + N+I T +GGTH+ G ++ LT
Sbjct: 233 AFQSEPYYIDGFINDV---IVNVGLKW-TESYSDNILSFVNNINTREGGTHVMGFRSGLT 288
Query: 363 RTLNSLGKKSKTVKDKDI-SLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 421
+ +N K SK K KDI +L+G+ +EGLT +ISV+VP P+FEGQTK++LGN E+RK+V
Sbjct: 289 KAMNEAFKNSKISK-KDIPNLTGDDFKEGLTAVISVKVPEPQFEGQTKSKLGNSEIRKIV 347
Query: 422 DQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLAD 481
+ V E+L E + L+P +D+IL K++ A +A AA++AR+ R+K+ S +LPGKLAD
Sbjct: 348 EVVVYEHLLEIINLNPLEIDTILGKAIKAARAREAARKARESERKKNAFESLALPGKLAD 407
Query: 482 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 541
C+S P E EI+IVEGDSAGGSAK GR+R FQAILPL GK+LNVE+ E + N+++
Sbjct: 408 CTSKNPLEREIYIVEGDSAGGSAKMGRNRFFQAILPLWGKMLNVEKTREDKVITNDKLIP 467
Query: 542 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 601
+I +LG GV G+ F LRYHKIII+ DADVDG+HIRTLLL FF+RY + L + G IY+
Sbjct: 468 IIASLGAGV-GKTFDITKLRYHKIIIMADADVDGSHIRTLLLAFFFRYMRDLIENGYIYI 526
Query: 602 GVPPLYKVERGKQVQYCYDDAELKKVKSSFPS---NALYSIQRFKGLGEMMPVQLWETTL 658
+PPLYK++ ++ Y Y++ E +K S + N++ S+QR+KGLGEM P QLWETT+
Sbjct: 527 AMPPLYKIKYDNRIYYFYEEKEKEKFLDSIETKNRNSI-SLQRYKGLGEMNPTQLWETTM 585
Query: 659 NPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 705
+P +R ++ + I+DA EA +F +LMG V+ RKE I QNA N++NLD
Sbjct: 586 DPARRKMRLMNIDDAIEAEKIFVTLMGDLVEPRKEFIEQNALNVINLD 633
>sp|O08399|GYRB_TREPA DNA gyrase subunit B OS=Treponema pallidum (strain Nichols) GN=gyrB
PE=1 SV=1
Length = 637
Score = 572 bits (1474), Expect = e-162, Method: Compositional matrix adjust.
Identities = 321/649 (49%), Positives = 427/649 (65%), Gaps = 37/649 (5%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL-- 134
Y + I VLEGLEAVRKRP MYIGSTGP GLHHLVYE++DN +DEA AGY I V L
Sbjct: 5 YSASSITVLEGLEAVRKRPGMYIGSTGPNGLHHLVYEVVDNCIDEAMAGYCDRITVVLEQ 64
Query: 135 -----LADNS--IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 187
+ DN IP+D+HP SALE VLT LHAGGKF S Y VSGGLHGVG+SVV
Sbjct: 65 GNVVRVEDNGRGIPVDVHPHEGVSALEVVLTKLHAGGKFDKKS--YKVSGGLHGVGVSVV 122
Query: 188 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSK---DRQGTRIRFWPDKQVF 244
NALS +EVTV+RDG EY+QK++ G P+ PV+ + +++GT IR+ D +F
Sbjct: 123 NALSLWVEVTVYRDGAEYYQKFNVGMPLA-------PVEKRGVSEKRGTIIRWQADPSIF 175
Query: 245 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 304
+ +D + + R+RELAFLN + I LR E K E+ F GG+ +V +LN
Sbjct: 176 KETVAYDFDVLLTRLRELAFLNSTVVIQLRDERLATAKQV--EFAFEGGIRHFVSYLNRG 233
Query: 305 K-----KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 359
K +PL+ + G + DV +++ALQ+ D Y++ + + N I T +GGTH+EG K+
Sbjct: 234 KSVVPERPLY-IEGSKSDV---LVEVALQY-HDGYTENVQSFVNDINTREGGTHLEGFKS 288
Query: 360 SLTRTLNSLGKKSKTVKDK---DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPE 416
+LTR N KKS + K + L GE VR GLT ++SV++P P+FEGQTKT+LGN E
Sbjct: 289 ALTRVANDFLKKSPKLAKKIEREEKLVGEDVRAGLTVVLSVKIPEPQFEGQTKTKLGNSE 348
Query: 417 VRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLP 476
VR +VD V E LT Y E +P VL IL KS++ +A LAA+RA++ R+KS + S LP
Sbjct: 349 VRGIVDSLVGERLTLYFEQNPGVLTKILEKSIAEAQARLAARRAKEAARRKSGMDSFGLP 408
Query: 477 GKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKN 536
GKLADCS P + E++IVEGDSAGGSAK+GRD + QAILPL GK+LNVE+ + N
Sbjct: 409 GKLADCSLKDPAKCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVLHN 468
Query: 537 EEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDE 596
E++Q +I LG GV G+DF +RYHK+II+ DADVDG+HIRTLLLTFF+RY + +
Sbjct: 469 EKLQPIIATLGTGV-GKDFDLTRIRYHKVIIMADADVDGSHIRTLLLTFFFRYLPQIIEA 527
Query: 597 GCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWET 656
G +Y+ +PPLY++ K+ Y Y D E + S + ++QR+KGLGEM QLWET
Sbjct: 528 GYVYLAMPPLYRIAWSKKELYVYSDTERDEALESIGKKSGVAVQRYKGLGEMDGTQLWET 587
Query: 657 TLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
T+NP +R + Q+V+ DA EA+ VFS+LMG V+ R++ I+ A LD
Sbjct: 588 TMNPVRRKMMQVVLSDAVEADRVFSTLMGEDVEPRRKFIEENAIYARLD 636
>sp|P34031|GYRB_SPICI DNA gyrase subunit B OS=Spiroplasma citri GN=gyrB PE=3 SV=1
Length = 640
Score = 572 bits (1473), Expect = e-162, Method: Compositional matrix adjust.
Identities = 304/647 (46%), Positives = 426/647 (65%), Gaps = 28/647 (4%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y SE IQ+LEGLEA+RKRP MYIG+T RGLHHLV+EI+DN++DE A +A+ I++ L
Sbjct: 4 NYNSESIQILEGLEAIRKRPGMYIGATNARGLHHLVWEIVDNSIDEVLANFANKIKIILN 63
Query: 136 ADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 186
D SI PI++HP T S LETV T+LHAGGKF S+ Y +SGGLHGVG SV
Sbjct: 64 KDESITVIDNGRGIPIEIHPKTKVSTLETVFTILHAGGKF--DSNTYKISGGLHGVGASV 121
Query: 187 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 246
VNALS+ L+V V ++ +Y ++ G + T + V S GT + F PD+++F
Sbjct: 122 VNALSKYLKVEVRKNNKKYVMEFHNGGQILT---PIKEVGSTSETGTTVTFLPDEKIFKE 178
Query: 247 AIQFDHNTIAGRIRELAFLNPKLTIAL---RKEDSDPEKNQYNEYFFAGGLEEYVQWLN- 302
F +TI RI++L FLN L I+L R+ED EK Y F G+++YV LN
Sbjct: 179 TTIFSFSTIQNRIKQLVFLNKGLEISLVDLREEDE--EKTVL--YQFNNGIKDYVLELNK 234
Query: 303 TDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLT 362
T PL+DV D I ++ LQ+ +D YS+ + + N+I T +GGTH EG + ++
Sbjct: 235 TIGTPLNDVFYVEGIEDNIVVEFGLQY-NDNYSENIFSFCNNINTHEGGTHEEGARLAIV 293
Query: 363 RTLNSLGKK--SKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKV 420
R +N+ K +K K + + + ++EG+T IIS+R P P++EGQT +L N EV+K+
Sbjct: 294 REINNYFKNQINKNNKGNEDKFTWDDIKEGMTIIISIRHPEPQYEGQTNQKLLNSEVKKI 353
Query: 421 VDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLA 480
V V + L+ YL +P+ I+ K +LKA + A+RA+++ R+K V+ S SLPGKL+
Sbjct: 354 VSNIVGKGLSSYLLENPEDAKKIIEKISLSLKATIVAQRAKEITRRKIVMDSFSLPGKLS 413
Query: 481 DCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQ 540
DC + + +E++IVEGDSAGGSAK GR+R+FQAILPLRGKILNVE+ + +++N EI
Sbjct: 414 DCETKDAKIAELYIVEGDSAGGSAKSGRNRKFQAILPLRGKILNVEKAKQIKIFENNEIN 473
Query: 541 NLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIY 600
++I ALG G+K ++F + LRY K+II+TDADVDGAHIR LLLTFFYRY K L + G IY
Sbjct: 474 SIITALGAGIK-DNFNDKKLRYQKVIIMTDADVDGAHIRILLLTFFYRYMKDLIENGNIY 532
Query: 601 VGVPPLYKVERGKQVQYCY-DDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLN 659
+ PPLYKVE Q++Y Y D+ + N Y+IQR+KGLGEM P QLWETT++
Sbjct: 533 IAQPPLYKVENSNQIRYVYSDNELELYKEELLKQNKNYTIQRYKGLGEMNPEQLWETTMD 592
Query: 660 PEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 705
PE+R+L ++ + +A EAN++ + LMG V+ RK+ I +NA + NLD
Sbjct: 593 PERRLLLKVSVNNAFEANLICNELMGENVEPRKKFIRENAKYVKNLD 639
>sp|O87545|GYRB_TREDE DNA gyrase subunit B OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=gyrB PE=3 SV=1
Length = 638
Score = 569 bits (1467), Expect = e-161, Method: Compositional matrix adjust.
Identities = 309/644 (47%), Positives = 426/644 (66%), Gaps = 25/644 (3%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL- 134
Y + I VL+GLEAVRKRP MYIGSTGP GLHHLVYE++DN +DEA AG+ I V L
Sbjct: 5 NYSANNITVLKGLEAVRKRPGMYIGSTGPDGLHHLVYEVVDNCIDEAMAGFCDKILVVLE 64
Query: 135 ------LADNS--IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 186
+ DN IP+D+HP SALE VLT LHAGGKF S Y VSGGLHGVG+SV
Sbjct: 65 PNDIVRVEDNGRGIPVDIHPTEKISALELVLTRLHAGGKFDKGS--YKVSGGLHGVGVSV 122
Query: 187 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 246
VNALS +E V++DG E++ K+ +G ++ V + ++ GT IR+ D +FT
Sbjct: 123 VNALSVWMEAKVYKDGFEHYAKFEKG----SILEPVKKIGETEKSGTVIRWAVDPSIFTE 178
Query: 247 AIQFDHNTIAGRIRELAFLNPKLTIALRKED-SDPEKNQYNEYFFAGGLEEYVQWLNTDK 305
++ +A R+RELAFLN K++I +R E S P++ + F GG+ ++V +LN K
Sbjct: 179 TTVYNFEVLATRLRELAFLNSKISITMRDERLSTPKEVTFA---FEGGISQFVSYLNESK 235
Query: 306 KPL-HDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 364
+ V + + I ++A+Q+ +D Y++ +L + N I T +GGTH+EG K +LTR
Sbjct: 236 QVFPKSPVFIEGEKNDILCEVAIQY-NDGYNENLLSFVNDINTREGGTHLEGFKTALTRV 294
Query: 365 LNSLGKK-SKTVK--DKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVV 421
+N KK K VK DK+ L+GE VR GLT I+SV+VP P+FEGQTKT+LGN +VR +V
Sbjct: 295 MNDFLKKYPKLVKKMDKEEKLTGEDVRAGLTAIVSVKVPEPQFEGQTKTKLGNSDVRGIV 354
Query: 422 DQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLAD 481
D V E LT + E +P+ ++ +L K ++ A +AA+RA++ R+KS L S LPGKLAD
Sbjct: 355 DSFVNEKLTLFFEQNPNEVEKVLEKCVAEAAARIAARRAKEATRRKSGLDSFGLPGKLAD 414
Query: 482 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 541
CS PE E++IVEGDSAGGSAK+GRD + QAILPL GK+LNVE+ + NE++Q
Sbjct: 415 CSLKDPESCEVYIVEGDSAGGSAKKGRDSKTQAILPLWGKMLNVEKTRLDKVVNNEKLQP 474
Query: 542 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 601
+I LG G+ G+DF E LRYHK+II+ DADVDG+HIRTLLLTFF+RY + ++G +Y+
Sbjct: 475 IIATLGTGI-GKDFNIEKLRYHKVIIMADADVDGSHIRTLLLTFFFRYMPQVIEKGHVYL 533
Query: 602 GVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPE 661
+PPLYK+ K+ Y Y+D E V ++QR+KGLGEM QLWETT++P
Sbjct: 534 AMPPLYKISHNKKEWYVYNDDERDSVLDQIGRGNNAAVQRYKGLGEMDGTQLWETTMDPA 593
Query: 662 QRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
+R + ++ + DA EA+ +FS+LMG V+ R++ I+ A NLD
Sbjct: 594 RRKMMRVTLPDAVEADRIFSTLMGEEVEPRRKFIEENAVYANLD 637
>sp|P22447|GYRB_MYCPN DNA gyrase subunit B OS=Mycoplasma pneumoniae (strain ATCC 29342 /
M129) GN=gyrB PE=1 SV=1
Length = 650
Score = 561 bits (1447), Expect = e-159, Method: Compositional matrix adjust.
Identities = 300/659 (45%), Positives = 425/659 (64%), Gaps = 33/659 (5%)
Query: 69 KENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYAS 128
++N ++ Y S I++LEGLEAVRKRP MYIGSTG GLHH+++EI+DN++DEA G+AS
Sbjct: 2 EDNNKTQAYDSSSIKILEGLEAVRKRPGMYIGSTGEEGLHHMIWEIIDNSIDEAMGGFAS 61
Query: 129 NIEVALLADN----------SIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGG 178
+++ L DN IP+D+HP TN+S +ETV TVLHAGGKF S Y VSGG
Sbjct: 62 TVKLTL-KDNFVTIVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDS--YKVSGG 118
Query: 179 LHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFW 238
LHGVG SVVNALS S +V V R+ +Y + G V + D + GT++ F
Sbjct: 119 LHGVGASVVNALSSSFKVWVAREHQQYFLAFHNGGEVIGDLVNEGKCDKE--HGTKVEFV 176
Query: 239 PDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYV 298
PD V + + IA R+++LAFLN + I D + Q + + GGL +Y+
Sbjct: 177 PDFTVMEKS-DYKQTVIASRLQQLAFLNKGIQIDFV--DERRQNPQSFSWKYDGGLVQYI 233
Query: 299 QWLNTDKKPLHDVVGFRKDVDG-----------ITIDLALQWCSDAYSDTMLGYANSIRT 347
LN +K+PL + + F + D I +++A Q+ + Y+ ++ + N+I T
Sbjct: 234 HHLNNEKEPLFEDIIFGEKTDTVKSVSRDESYTIKVEVAFQY-NKTYNQSIFSFCNNINT 292
Query: 348 IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQ 407
+GGTH+EG + +L + +N ++K +K+ D ++ + + EGLT IIS++ PNP++EGQ
Sbjct: 293 TEGGTHVEGFRNALVKIINRFAVENKFLKETDEKITRDDICEGLTAIISIKHPNPQYEGQ 352
Query: 408 TKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQK 467
TK +LGN EVR +V+ V E ++ +P ++I+ K+L A +A ++ AR+L R+K
Sbjct: 353 TKKKLGNTEVRPLVNSIVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRK 412
Query: 468 SVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVER 527
S S SLPGKLADC++ P SE++IVEGDSAGG+AK GRDR FQAILPLRGKILNVE+
Sbjct: 413 SPFDSGSLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEK 472
Query: 528 KDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFY 587
++ N EI L+ A+G G+K DF+ E LRY+KIII+TDADVDGAHIRTLLLTFF+
Sbjct: 473 SHFEQIFNNVEISALVMAVGCGIK-PDFELEKLRYNKIIIMTDADVDGAHIRTLLLTFFF 531
Query: 588 RYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGE 647
R+ L ++G IY+ PPLYKV + Y D +L++ K P N Y++QR+KGLGE
Sbjct: 532 RFMYPLVEQGNIYIAQPPLYKVSYSNKDLYMQTDVQLEEWKQQHP-NLKYNLQRYKGLGE 590
Query: 648 MMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 705
M +QLWETT++P+ R L ++ +EDA+ A+ FS LMG V R+E I QNA N+ N+D
Sbjct: 591 MDAIQLWETTMDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIEQNARNVKNID 649
>sp|Q9A0L0|GYRB_STRP1 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M1 GN=gyrB
PE=3 SV=1
Length = 650
Score = 561 bits (1445), Expect = e-159, Method: Compositional matrix adjust.
Identities = 306/647 (47%), Positives = 437/647 (67%), Gaps = 26/647 (4%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V +
Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFI 72
Query: 135 LADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 185
ADNSI P+D+ T + A+ETV TVLHAGGKFGG S LHGVG S
Sbjct: 73 EADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGG--LHGVGSS 130
Query: 186 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 245
VVNALS L+V V+++G ++Q++ RG V L + + D GT + F PD ++FT
Sbjct: 131 VVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEV----IGTTDVTGTTVHFTPDPEIFT 186
Query: 246 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 305
QFD++ +A RI+ELAFLN L I++ + S E+ ++ + + GG+ YV++LN K
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEH--FLYEGGIGSYVEFLNDKK 244
Query: 306 KPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 364
+ + + +++GI +++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR
Sbjct: 245 DVIFETPIYTDGELEGIAVEVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRV 303
Query: 365 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 424
+N KK+K +K+ + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++
Sbjct: 304 INDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRL 363
Query: 425 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSS 484
E +L +P V I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS
Sbjct: 364 FSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSS 423
Query: 485 TTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 544
++E+FIVEGDSAGGSAK GR+R FQAILP+RGKILNVE+ + NEEI++L
Sbjct: 424 NDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFT 483
Query: 545 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 604
A+G G G DF RY K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ P
Sbjct: 484 AMGTGF-GADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQP 542
Query: 605 PLYKVERGKQV-QYCY----DDAELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTL 658
P+Y V+ G ++ +Y + +LK + + ++QR+KGLGEM QLWETT+
Sbjct: 543 PIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTM 602
Query: 659 NPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
+PE R++ ++ ++DAAEA+ VF LMG RV+ R++ I+ A LD
Sbjct: 603 DPENRLMARVTVDDAAEADKVFDMLMGDRVEPRRDFIEENAVYSTLD 649
>sp|Q8P1M4|GYRB_STRP8 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=gyrB PE=3 SV=1
Length = 650
Score = 560 bits (1443), Expect = e-158, Method: Compositional matrix adjust.
Identities = 306/647 (47%), Positives = 437/647 (67%), Gaps = 26/647 (4%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V +
Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFI 72
Query: 135 LADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 185
ADNSI P+D+ T + A+ETV TVLHAGGKFGG S LHGVG S
Sbjct: 73 EADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGG--LHGVGSS 130
Query: 186 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 245
VVNALS L+V V+++G ++Q++ RG V L + + D GT + F PD ++FT
Sbjct: 131 VVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEI----IGTTDVTGTTVHFTPDPEIFT 186
Query: 246 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 305
QFD++ +A RI+ELAFLN L I++ + S E+ ++ + + GG+ YV++LN K
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKK 244
Query: 306 KPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 364
+ + + +++GI +++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR
Sbjct: 245 DVIFETPIYTDGELEGIAVEVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRV 303
Query: 365 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 424
+N KK+K +K+ + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++
Sbjct: 304 INDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRL 363
Query: 425 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSS 484
E +L +P V I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS
Sbjct: 364 FSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSS 423
Query: 485 TTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 544
++E+FIVEGDSAGGSAK GR+R FQAILP+RGKILNVE+ + NEEI++L
Sbjct: 424 NDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFT 483
Query: 545 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 604
A+G G G DF RY K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ P
Sbjct: 484 AMGTGF-GADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQP 542
Query: 605 PLYKVERGKQV-QYCY----DDAELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTL 658
P+Y V+ G ++ +Y + +LK + + ++QR+KGLGEM QLWETT+
Sbjct: 543 PIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTM 602
Query: 659 NPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
+PE R++ ++ ++DAAEA+ VF LMG RV+ R++ I+ A LD
Sbjct: 603 DPENRLMARVTVDDAAEADKVFDMLMGDRVEPRRDFIEENAVYSTLD 649
>sp|Q5XD05|GYRB_STRP6 DNA gyrase subunit B OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=gyrB PE=3 SV=1
Length = 650
Score = 560 bits (1443), Expect = e-158, Method: Compositional matrix adjust.
Identities = 306/647 (47%), Positives = 437/647 (67%), Gaps = 26/647 (4%)
Query: 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVAL 134
+ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA AG+AS+I+V +
Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFI 72
Query: 135 LADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 185
ADNSI P+D+ T + A+ETV TVLHAGGKFGG S LHGVG S
Sbjct: 73 EADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGG--LHGVGSS 130
Query: 186 VVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 245
VVNALS L+V V+++G ++Q++ RG V L + + D GT + F PD ++FT
Sbjct: 131 VVNALSTQLDVRVYKNGQIHYQEFKRGAVVADLEI----IGTTDVTGTTVHFTPDPEIFT 186
Query: 246 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 305
QFD++ +A RI+ELAFLN L I++ + S E+ ++ + + GG+ YV++LN K
Sbjct: 187 ETTQFDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEH--FHYEGGIGSYVEFLNDKK 244
Query: 306 KPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRT 364
+ + + +++GI +++A+Q+ + +Y +T++ +AN+I T +GGTH +G +A+LTR
Sbjct: 245 DVIFETPIYTDGELEGIAVEVAMQYTT-SYQETVMSFANNIHTHEGGTHEQGFRAALTRV 303
Query: 365 LNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQS 424
+N KK+K +K+ + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN EV K+ ++
Sbjct: 304 INDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRL 363
Query: 425 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSS 484
E +L +P V I+ K + A KA +AAKRAR++ R+KS L S+LPGKLADCSS
Sbjct: 364 FSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSS 423
Query: 485 TTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 544
++E+FIVEGDSAGGSAK GR+R FQAILP+RGKILNVE+ + NEEI++L
Sbjct: 424 NDANQNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFT 483
Query: 545 ALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVP 604
A+G G G DF RY K++I+TDADVDGAHIRTLLLT YR+ + + + G +Y+ P
Sbjct: 484 AMGTGF-GADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQP 542
Query: 605 PLYKVERGKQV-QYCY----DDAELKKVKSSFP-SNALYSIQRFKGLGEMMPVQLWETTL 658
P+Y V+ G ++ +Y + +LK + + ++QR+KGLGEM QLWETT+
Sbjct: 543 PIYGVKVGSEIKEYIQPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTM 602
Query: 659 NPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
+PE R++ ++ ++DAAEA+ VF LMG RV+ R++ I+ A LD
Sbjct: 603 DPENRLMARVTVDDAAEADKVFDMLMGDRVEPRRDFIEENAVYSTLD 649
>sp|P47249|GYRB_MYCGE DNA gyrase subunit B OS=Mycoplasma genitalium (strain ATCC 33530 /
G-37 / NCTC 10195) GN=gyrB PE=3 SV=1
Length = 650
Score = 557 bits (1436), Expect = e-158, Method: Compositional matrix adjust.
Identities = 301/659 (45%), Positives = 427/659 (64%), Gaps = 33/659 (5%)
Query: 69 KENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYAS 128
+EN + Y S I+VLEGLEAVRKRP MYIGSTG GLHH+++EI+DN++DEA G+AS
Sbjct: 2 EENNKANIYDSSSIKVLEGLEAVRKRPGMYIGSTGEEGLHHMIWEIVDNSIDEAMGGFAS 61
Query: 129 NIEVALLADN----------SIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGG 178
+++ L DN IP+D+HP TN+S +ETV TVLHAGGKF S Y VSGG
Sbjct: 62 FVKLTL-EDNFVTRVEDDGRGIPVDIHPKTNRSTVETVFTVLHAGGKFDNDS--YKVSGG 118
Query: 179 LHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFW 238
LHGVG SVVNALS S +V V+R +Y +S G V + V +S+ GT + F
Sbjct: 119 LHGVGASVVNALSSSFKVWVFRQNKKYFLSFSDGGKV--IGDLVQEGNSEKEHGTIVEFV 176
Query: 239 PDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYV 298
PD V + + I R+++LAFLN + I D+ + Q + + GGL EY+
Sbjct: 177 PDFSVMEKS-DYKQTVIVSRLQQLAFLNKGIRIDFV--DNRKQNPQSFSWKYDGGLVEYI 233
Query: 299 QWLNTDKKPLHD----------VVGFRKDVD-GITIDLALQWCSDAYSDTMLGYANSIRT 347
LN +K+PL + V +D + + +++A Q+ + Y+ ++ + N+I T
Sbjct: 234 HHLNNEKEPLFNEVIADEKTETVKAVNRDENYTVKVEVAFQY-NKTYNQSIFSFCNNINT 292
Query: 348 IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQ 407
+GGTH+EG + +L + +N ++K +KD D ++ + V EGLT IIS++ PNP++EGQ
Sbjct: 293 TEGGTHVEGFRNALVKIINRFAVENKFLKDSDEKINRDDVCEGLTAIISIKHPNPQYEGQ 352
Query: 408 TKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQK 467
TK +LGN EVR +V+ V E ++ +P ++I+ K+L A +A ++ AR+L R+K
Sbjct: 353 TKKKLGNTEVRPLVNSVVSEIFERFMLENPQEANAIIRKTLLAQEARRRSQEARELTRRK 412
Query: 468 SVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVER 527
S S SLPGKLADC++ P SE++IVEGDSAGG+AK GRDR FQAILPLRGKILNVE+
Sbjct: 413 SPFDSGSLPGKLADCTTRDPSISELYIVEGDSAGGTAKTGRDRYFQAILPLRGKILNVEK 472
Query: 528 KDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFY 587
+ ++ N EI L+ A+G G+K DF+ E LRY KI+I+TDADVDGAHIRTLLLTFF+
Sbjct: 473 SNFEQIFNNAEISALVMAIGCGIK-PDFELEKLRYSKIVIMTDADVDGAHIRTLLLTFFF 531
Query: 588 RYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGE 647
R+ L ++G I++ PPLYKV + Y + D +L++ KS P N + +QR+KGLGE
Sbjct: 532 RFMYPLVEQGNIFIAQPPLYKVSYSHKDLYMHTDVQLEQWKSQNP-NVKFGLQRYKGLGE 590
Query: 648 MMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 705
M +QLWETT++P+ R L ++ +EDA+ A+ FS LMG V R+E I+ NA ++ N+D
Sbjct: 591 MDALQLWETTMDPKVRTLLKVTVEDASIADKAFSLLMGDEVPPRREFIEKNARSVKNID 649
>sp|Q9L7L3|GYRB_MYCPA DNA gyrase subunit B OS=Mycobacterium paratuberculosis (strain ATCC
BAA-968 / K-10) GN=gyrB PE=3 SV=1
Length = 677
Score = 553 bits (1426), Expect = e-156, Method: Compositional matrix adjust.
Identities = 311/684 (45%), Positives = 434/684 (63%), Gaps = 54/684 (7%)
Query: 67 AFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGY 126
A ++ YG+ I VLEGLEAVRKRP MYIGSTG RGLHHL++E++DN+VDEA AGY
Sbjct: 2 AAQKKKAQDEYGASAITVLEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNSVDEAMAGY 61
Query: 127 ASNIEVALLADNS---------IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSG 177
A ++V +L D S IP+ +H AT ++ V+T LHAGGKFGG +SGY+VSG
Sbjct: 62 ADRVDVRILDDGSVEVADNGRGIPVAMH-ATGAPTVDVVMTQLHAGGKFGGENSGYNVSG 120
Query: 178 GLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF 237
GLHGVG+SVVNALS LEV + RDG E+ Q Y P T ++ R GT IRF
Sbjct: 121 GLHGVGVSVVNALSTRLEVNIARDGYEWSQYYDHAVPGTLKQG-----EATKRTGTTIRF 175
Query: 238 WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKE--------------------- 276
W D +F T ++D T+A R++E+AFLN LTI L E
Sbjct: 176 WADPDIFETT-EYDFETVARRLQEMAFLNKGLTINLTDERVTNEEVVDEVVSDTADAPKS 234
Query: 277 -------DSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQ 328
+ P K ++ + + GGL ++V+ +N K P+H ++ F G +++A+Q
Sbjct: 235 AQEKAAESAAPHKVKHRTFHYPGGLVDFVKHINRTKNPIHQSIIDFGGKGPGHEVEIAMQ 294
Query: 329 WCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVR 388
W + YS+++ +AN+I T +GGTH EG +++LT +N K K +KDKD +L+G+ +R
Sbjct: 295 W-NGGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDKKLLKDKDPNLTGDDIR 353
Query: 389 EGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSL 448
EGL +ISV+V P+FEGQTKT+LGN EV+ V + E LT + E +P I++K++
Sbjct: 354 EGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPADAKVIVNKAV 413
Query: 449 SALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGR 508
S+ +A +AA++AR+LVR+KS LPGKLADC ST P +SE+++VEGDSAGGSAK GR
Sbjct: 414 SSAQARIAARKARELVRRKSATDLGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGR 473
Query: 509 DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIIL 568
D FQAILPLRGKI+NVE+ + KN E+Q +I ALG G+ E F LRYHKI+++
Sbjct: 474 DSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDE-FDITKLRYHKIVLM 532
Query: 569 TDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE-RGKQVQYCYDDAELK-- 625
DADVDG HI TLLLT +R+ + L + G +++ PPLYK++ + ++ Y D E
Sbjct: 533 ADADVDGQHISTLLLTLLFRFMRPLIEHGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGL 592
Query: 626 ---KVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSS 682
+K+ N IQR+KGLGEM +LWETT++P R+L+Q+ ++DAA A+ +FS
Sbjct: 593 LEAGLKAGKKINKDDGIQRYKGLGEMDAKELWETTMDPTVRVLRQVTLDDAAAADELFSI 652
Query: 683 LMGARVDTRKELI-QNAANLVNLD 705
LMG VD R+ I +NA ++ LD
Sbjct: 653 LMGEDVDARRSFITRNAKDVRFLD 676
>sp|P47720|GYRB_MYCGA DNA gyrase subunit B OS=Mycoplasma gallisepticum (strain R(low /
passage 15 / clone 2)) GN=gyrB PE=3 SV=2
Length = 648
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 304/658 (46%), Positives = 427/658 (64%), Gaps = 36/658 (5%)
Query: 71 NPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNI 130
N Y S+ I+VLEGL AVRKRP MYIGST +GLHH+++EI+DN+VDE AGY + +
Sbjct: 3 NTKKDQYSSQSIKVLEGLSAVRKRPGMYIGSTDQKGLHHMIWEIIDNSVDEMMAGYGTTV 62
Query: 131 EVALLADN----------SIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLH 180
++ L DN IP+D+H TNKS +ETVLT+LHAGGKF S YS+SGGLH
Sbjct: 63 KLTL-KDNYLVEVEDDGRGIPVDIHEKTNKSTVETVLTILHAGGKF--DSDTYSMSGGLH 119
Query: 181 GVGLSVVNALSESLEVTVWRD-GMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWP 239
GVG SVVNALS S +V V RD + Y + G P+ L ++ DSK +QGTRI+F P
Sbjct: 120 GVGASVVNALSSSFKVWVNRDYKIHYIEFKDGGVPLKPL--EIIGTDSK-KQGTRIQFVP 176
Query: 240 DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQ 299
D + ++D IA RI +LAFLN + E +D + Q E+ + GG+++YV+
Sbjct: 177 DFSIME-QFEYDETIIADRIEQLAFLNKGIKFIFNDERTDKKTKQ--EWLYEGGIKQYVE 233
Query: 300 WLNTDKKPLHDVVGFRKDVDGITI-----------DLALQWCSDAYSDTMLGYANSIRTI 348
LN K+P+ + + + +T+ ++A Q+ ++ Y ++ + N+I T
Sbjct: 234 NLNASKEPIIPQIIYGEKKTKVTLPKRNLEVTMLLEVAFQY-TNGYYNSTYSFCNNIHTN 292
Query: 349 DGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQT 408
GGTH EG K +L + +N + K +K+ D +S E + EGLT IIS++ P+++GQT
Sbjct: 293 QGGTHEEGFKNALYKIINRYALEKKFIKETDGKISKEDLSEGLTAIISIKHSEPQYQGQT 352
Query: 409 KTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKS 468
K RLGN EVR+ + V E L + +P+ I +K++SA+ + ++ A + R KS
Sbjct: 353 KDRLGNTEVREFTNSVVSELLERFFLENPEEAAKITAKAVSAMFSRKRSEAALESAR-KS 411
Query: 469 VLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERK 528
S+SLPGKLADC++ E SE++IVEGDSAGGSAK GRDR +QAILPLRGK+LNVE+
Sbjct: 412 PFESASLPGKLADCTTKDMEISELYIVEGDSAGGSAKSGRDRFYQAILPLRGKVLNVEKA 471
Query: 529 DEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYR 588
+ ++KNEEI+ LI A+G GV E F + +RY+KIII+TDADVDGAHIR LLLTFF+R
Sbjct: 472 NHEKIFKNEEIRTLITAIGAGVNPE-FSLDKIRYNKIIIMTDADVDGAHIRILLLTFFFR 530
Query: 589 YQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEM 648
+ L ++G +Y+ PPLY+V KQ +Y Y DA+L++ K+ P N Y +QR+KGLGEM
Sbjct: 531 HMFPLIEKGHVYIAQPPLYRVSYNKQNKYIYSDAQLEEWKNQNP-NVRYELQRYKGLGEM 589
Query: 649 MPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ-NAANLVNLD 705
VQLWETT++PE+R L ++ I DAA A+ FS LMG V R++ I+ NA ++ N+D
Sbjct: 590 DDVQLWETTMDPEKRTLLKVSINDAANADKTFSLLMGDEVSPRRDFIEKNAKSVKNID 647
>sp|Q59192|PARE_BACSU DNA topoisomerase 4 subunit B OS=Bacillus subtilis (strain 168)
GN=parE PE=3 SV=2
Length = 655
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 302/638 (47%), Positives = 405/638 (63%), Gaps = 34/638 (5%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y + IQVLEGLEAVRKRP MYIGST RGLHHLVYEI+DN+VDE AG+ +I V +
Sbjct: 9 YNEDAIQVLEGLEAVRKRPGMYIGSTDARGLHHLVYEIVDNSVDEVLAGHGDHIIVKIHK 68
Query: 137 DNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 187
DNSI P +H K E +LTVLHAGGKFG GY SGGLHGVG SVV
Sbjct: 69 DNSISVQDRGRGMPTGMHK-LGKPTPEVILTVLHAGGKFG--QGGYKTSGGLHGVGASVV 125
Query: 188 NALSESLEVTVWRDGMEYHQKYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 246
NALSE L VT+ RDG Y Q++ G KPVT+L + + GT F PD +F+T
Sbjct: 126 NALSEWLTVTIERDGFVYQQRFENGGKPVTSLE----KIGKTKKTGTLTHFKPDPTMFST 181
Query: 247 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 306
++ T++ R+RE AFL L I L E +D Q +++ G+E +V +LN +K
Sbjct: 182 TT-YNFETLSERLRESAFLLKGLKIELIDERND----QREVFYYENGIEAFVAYLNEEKD 236
Query: 307 PLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLN 366
L +VV F + I +D A Q+ +D YS+ +L + N++RT DGGTH G K ++TR N
Sbjct: 237 VLSEVVSFEGEHHSIEVDFAFQF-NDGYSENILSFVNNVRTKDGGTHESGAKTAMTRAFN 295
Query: 367 SLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQS 424
+K +K+KD +L G +REGL+ IISVR+P +FEGQTK +LG E R VD
Sbjct: 296 EYARKVALLKEKDKNLEGTDIREGLSAIISVRIPEELLQFEGQTKGKLGTSEARSAVDAI 355
Query: 425 VQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVR--QKSVLRSSSLPGKLADC 482
V E L +LE + D ++ K++ A +A AA++AR+ R +K ++L GKL
Sbjct: 356 VSEQLAYFLEENRDTATLLVKKAIKASQAREAARKAREEARSGKKRKKSEATLSGKLTPA 415
Query: 483 SSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 542
S P ++E+++VEGDSAGGSAKQGRDRRFQA+LPLRGK++N E+ A ++KNEEI +
Sbjct: 416 GSRNPAKNELYLVEGDSAGGSAKQGRDRRFQAVLPLRGKVINTEKAKLADIFKNEEINTI 475
Query: 543 IRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVG 602
I A+G GV G DF + + Y KIII+TDAD DGAHI+ LLLTFFYRY K L + G +++
Sbjct: 476 IHAIGGGV-GADFSIDDINYDKIIIMTDADTDGAHIQVLLLTFFYRYMKPLIEHGKVFIA 534
Query: 603 VPPLYKVERGKQ----VQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTL 658
+PPLYKV +G ++Y + D E+ V Y+IQR+KGLGEM QLWETT+
Sbjct: 535 LPPLYKVSKGSGKKEIIEYAWSDEEMGDVLKKVGKG--YTIQRYKGLGEMNADQLWETTM 592
Query: 659 NPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 696
NPE R L ++ I+DAA ++LMG +V+ R++ I+
Sbjct: 593 NPESRTLVRVKIDDAARVERRVTTLMGDKVEPRRKWIE 630
>sp|Q9ZFK1|GYRB_BORHE DNA gyrase subunit B OS=Borrelia hermsii GN=gyrB PE=3 SV=1
Length = 634
Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust.
Identities = 303/643 (47%), Positives = 424/643 (65%), Gaps = 24/643 (3%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
+Y + IQVL+GLEAVRKRP MYIGS GLHHLVYE++DN++DEA AG+ IEV +
Sbjct: 2 SYVASNIQVLKGLEAVRKRPGMYIGSVSINGLHHLVYEVVDNSIDEALAGFCDKIEVVIN 61
Query: 136 ADNS---------IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 186
+DNS IP D+H SALE VLT LH+GGKF + Y VSGGLHGVG+SV
Sbjct: 62 SDNSVTVNDNGRGIPTDVHEEEGISALELVLTKLHSGGKFNKGT--YKVSGGLHGVGISV 119
Query: 187 VNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 246
VNALS L V V RDG + Q YSRG P T V + +GT++ F D ++F T
Sbjct: 120 VNALSSFLAVIVSRDGKLFKQTYSRGIP----TSEVDIIGVSSARGTKVTFLADSEIFET 175
Query: 247 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 306
+++D T++ R+RELAFLN K+ I++ ED K ++ E++F GG++ +V ++ + K
Sbjct: 176 -LEYDFETLSKRLRELAFLNDKIRISI--EDRRSGKEKFLEFYFEGGIKAFVDYITNNSK 232
Query: 307 PLHDVVGF-RKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 365
+ + F D + + + L+W ++ YSD +L + N+I T +GGTH+ G K+ + +
Sbjct: 233 NIQNEPYFIEGSCDDVIVSVGLKW-TEGYSDHILSFVNNINTREGGTHVAGFKSGFLKAM 291
Query: 366 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV 425
+ + SK K SL+ + +EGLT +IS+++P P+FEGQTK +LGN V+K+V+ V
Sbjct: 292 SEAFRDSKISKKDVPSLTLDDFKEGLTAVISIKIPEPQFEGQTKGKLGNSYVKKIVETIV 351
Query: 426 QEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSST 485
+ L + ++ + +D IL+K++ A +A AA++AR+ R+KS S +LPGKLADC+S
Sbjct: 352 HDGLLKVIDDNLLEVDIILNKAIRAARAREAARKARESERKKSAFESLALPGKLADCASK 411
Query: 486 TPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRA 545
P E EI+IVEGDSAGGSAK GRDR QAILPL GK+LNVE+ E + N+++ +I +
Sbjct: 412 NPAEREIYIVEGDSAGGSAKMGRDRFSQAILPLWGKMLNVEKTREDKVITNDKLIPIIAS 471
Query: 546 LGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPP 605
LG GV G+ F E LRYHKIII+ DADVDG+HIRTLLLTFF+RY + L + G +Y+ +PP
Sbjct: 472 LGAGV-GKTFYIEKLRYHKIIIMADADVDGSHIRTLLLTFFFRYMRELIENGHVYIAMPP 530
Query: 606 LYKVERGKQVQYCYDDAELKKVKSSFPSNAL--YSIQRFKGLGEMMPVQLWETTLNPEQR 663
LYK++ + Y YDD E + S + S+QR+KGLGEM P QLWETT+NP R
Sbjct: 531 LYKLKYENREHYFYDDLEKEAFLGSIETGKRDKVSLQRYKGLGEMNPTQLWETTMNPATR 590
Query: 664 MLKQLVIEDAAEANVVFSSLMGARVDTRKELI-QNAANLVNLD 705
+K + I DA +A +F +LMG V+ R+E I QNA ++VNLD
Sbjct: 591 KMKLIKINDAIQAEKIFVTLMGDDVEPRREFIEQNALDVVNLD 633
>sp|P0A4M0|GYRB_STRR6 DNA gyrase subunit B OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=gyrB PE=3 SV=1
Length = 648
Score = 549 bits (1415), Expect = e-155, Method: Compositional matrix adjust.
Identities = 310/658 (47%), Positives = 437/658 (66%), Gaps = 29/658 (4%)
Query: 65 TEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQA 124
TE K N ++ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA A
Sbjct: 2 TEEIK-NLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 60
Query: 125 GYASNIEVALLADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSV 175
G+AS+I+V + D+SI P+D+ T + A+ETV TVLHAGGKFGG S
Sbjct: 61 GFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSG 120
Query: 176 SGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRI 235
LHGVG SVVNALS L+V V ++G ++Q+Y RG V L V D+ GT +
Sbjct: 121 G--LHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEI----VGDTDKTGTTV 174
Query: 236 RFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLE 295
F PD ++FT FD + + RI+ELAFLN L I++ + E+ ++ Y + GG+
Sbjct: 175 HFTPDPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKH--YHYEGGIA 232
Query: 296 EYVQWLNTDKKPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHI 354
YV+++N +K + D + ++D IT+++A+Q+ + Y + ++ +AN+I T +GGTH
Sbjct: 233 SYVEYINENKDVIFDTPIYTDGEMDDITVEVAMQYTT-GYHENVMSFANNIHTHEGGTHE 291
Query: 355 EGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGN 414
+G + +LTR +N +K+K +KD + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN
Sbjct: 292 QGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 351
Query: 415 PEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSS 474
EV K+ ++ E +++L +P + I+ K + A KA +AAKRAR++ R+KS L S+
Sbjct: 352 SEVVKITNRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISN 411
Query: 475 LPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMY 534
LPGKLADCSS P E+E+FIVEGDSAGGSAK GR+R FQAILP+RGKILNVE+ +
Sbjct: 412 LPGKLADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKIL 471
Query: 535 KNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLF 594
NEEI++L A+G G G +F RY K++++TDADVDGAHIRTLLLT YRY K +
Sbjct: 472 ANEEIRSLFTAMGTGF-GAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPIL 530
Query: 595 DEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYS-------IQRFKGLGE 647
+ G +Y+ PP+Y V+ G +++ +++K + A YS IQR+KGLGE
Sbjct: 531 EAGYVYIAQPPIYGVKVGSEIKEYIQPGADQEIKLQ-EALARYSEGRTKPTIQRYKGLGE 589
Query: 648 MMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
M QLWETT++PE R++ ++ ++DAAEA+ +F LMG RV+ R+E I+ A LD
Sbjct: 590 MDDHQLWETTMDPEHRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLD 647
>sp|P0A4L9|GYRB_STRPN DNA gyrase subunit B OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=gyrB PE=3 SV=1
Length = 648
Score = 549 bits (1415), Expect = e-155, Method: Compositional matrix adjust.
Identities = 310/658 (47%), Positives = 437/658 (66%), Gaps = 29/658 (4%)
Query: 65 TEAFKENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQA 124
TE K N ++ Y + QIQVLEGLEAVR RP MYIGST GLHHLV+EI+DN++DEA A
Sbjct: 2 TEEIK-NLQAQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALA 60
Query: 125 GYASNIEVALLADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSV 175
G+AS+I+V + D+SI P+D+ T + A+ETV TVLHAGGKFGG S
Sbjct: 61 GFASHIQVFIEPDDSITVVDDGRGIPVDIQEKTGRPAVETVFTVLHAGGKFGGGGYKVSG 120
Query: 176 SGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRI 235
LHGVG SVVNALS L+V V ++G ++Q+Y RG V L V D+ GT +
Sbjct: 121 G--LHGVGSSVVNALSTQLDVHVHKNGKIHYQEYRRGHVVADLEI----VGDTDKTGTTV 174
Query: 236 RFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLE 295
F PD ++FT FD + + RI+ELAFLN L I++ + E+ ++ Y + GG+
Sbjct: 175 HFTPDPKIFTETTIFDFDKLNKRIQELAFLNRGLQISITDKRQGLEQTKH--YHYEGGIA 232
Query: 296 EYVQWLNTDKKPLHDVVGFRK-DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHI 354
YV+++N +K + D + ++D IT+++A+Q+ + Y + ++ +AN+I T +GGTH
Sbjct: 233 SYVEYINENKDVIFDTPIYTDGEMDDITVEVAMQYTT-GYHENVMSFANNIHTHEGGTHE 291
Query: 355 EGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGN 414
+G + +LTR +N +K+K +KD + +L+GE VREGLT +ISV+ PNP+FEGQTKT+LGN
Sbjct: 292 QGFRTALTRVINDYARKNKLLKDNEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGN 351
Query: 415 PEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSS 474
EV K+ ++ E +++L +P + I+ K + A KA +AAKRAR++ R+KS L S+
Sbjct: 352 SEVVKITNRLFSEAFSDFLMENPQIAKRIVEKGILAAKARVAAKRAREVTRKKSGLEISN 411
Query: 475 LPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMY 534
LPGKLADCSS P E+E+FIVEGDSAGGSAK GR+R FQAILP+RGKILNVE+ +
Sbjct: 412 LPGKLADCSSNNPAETELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKASMDKIL 471
Query: 535 KNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLF 594
NEEI++L A+G G G +F RY K++++TDADVDGAHIRTLLLT YRY K +
Sbjct: 472 ANEEIRSLFTAMGTGF-GAEFDVSKARYQKLVLMTDADVDGAHIRTLLLTLIYRYMKPIL 530
Query: 595 DEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYS-------IQRFKGLGE 647
+ G +Y+ PP+Y V+ G +++ +++K + A YS IQR+KGLGE
Sbjct: 531 EAGYVYIAQPPIYGVKVGSEIKEYIQPGADQEIKLQ-EALARYSEGRTKPTIQRYKGLGE 589
Query: 648 MMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705
M QLWETT++PE R++ ++ ++DAAEA+ +F LMG RV+ R+E I+ A LD
Sbjct: 590 MDDHQLWETTMDPEHRLMARVSVDDAAEADKIFDMLMGDRVEPRREFIEENAVYSTLD 647
>sp|P43053|GYRB_MYCHP DNA gyrase subunit B OS=Mycoplasma hominis (strain ATCC 23114 /
NBRC 14850 / NCTC 10111 / PG21) GN=gyrB PE=3 SV=2
Length = 648
Score = 548 bits (1413), Expect = e-155, Method: Compositional matrix adjust.
Identities = 299/652 (45%), Positives = 418/652 (64%), Gaps = 32/652 (4%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
Y ++ IQ+LEGLEAVRKRP MYIGS G +GLHHL++EI+DN+VDEA AG+A+ I++ L
Sbjct: 10 YNADNIQILEGLEAVRKRPGMYIGSIGFKGLHHLLWEIVDNSVDEAMAGFATEIKIKLYP 69
Query: 137 DNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 187
+N I P +H T KSA+ET+LTVLHAGGKF GS+ Y VSGGLHGVG SVV
Sbjct: 70 NNVIEVEDNGRGMPTGIHSGTKKSAVETILTVLHAGGKFDGSN--YKVSGGLHGVGASVV 127
Query: 188 NALSESLEVTVWRDGMEYHQKYSRGK-PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTT 246
NALS EV V RDG ++Q++ G PV L V+ S+ GT I+F PD +
Sbjct: 128 NALSSEFEVWVKRDGKLHYQQFRNGGIPVKPL--EVIGNVSEVETGTTIKFHPDYTIMEK 185
Query: 247 AIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKK 306
FD +TI +++A+LN L I + + EKN + F GGL +YV+ LN KK
Sbjct: 186 E-NFDFDTIIDHSKQIAYLNKGLKITVE----NVEKNIIKVFCFEGGLIDYVKELNKGKK 240
Query: 307 PLHDVVGFRKDV---------DGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGV 357
+ V + + V + +++A+Q+ ++AY+++++ YAN+I+TIDGGTH +G
Sbjct: 241 LIVPEVIYAEGVFNDKNFTNGQDVIVEVAMQY-NEAYTNSIVSYANNIQTIDGGTHEQGF 299
Query: 358 KASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEV 417
+L R N+ + +K K ++ E V+EGL IIS++ +P FEGQTK +L N +
Sbjct: 300 YDALVRIYNNYAETNKLFKTSSEKITREDVKEGLVAIISIKHTDPIFEGQTKGKLENKDA 359
Query: 418 RKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPG 477
R ++ + + L YL +P++ +I+ K L + L +AR+ R+ + L +LPG
Sbjct: 360 RIATNKILSDSLERYLNENPEIARAIIEKCLLSQHTRLLEIKAREASRKGNGLDLGNLPG 419
Query: 478 KLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNE 537
KLADCSS E E+FIVEG+SAGGSAK GRDR QAILPLRGK++N E+ A++ N+
Sbjct: 420 KLADCSSKNAEIRELFIVEGNSAGGSAKMGRDRSIQAILPLRGKVINAEKNSFASVLSNK 479
Query: 538 EIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEG 597
EI +I ALG G+ E F L+YHKIII+TDADVDGAHI TLLLTFFYRY K L + G
Sbjct: 480 EIATMIHALGTGINTE-FDINKLKYHKIIIMTDADVDGAHITTLLLTFFYRYMKPLIEYG 538
Query: 598 CIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETT 657
+Y+ PPLYK+ GK V+Y Y+D + +++ + +IQR+KGLGEM P QLWETT
Sbjct: 539 FVYLAQPPLYKITSGKNVEYAYNDLQKEQIMAKLEDKRNVAIQRYKGLGEMDPEQLWETT 598
Query: 658 LNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 709
++PE R + Q+ I+DAA + VF++LMG ++ R + IQ A N ++DI
Sbjct: 599 MDPETRKMLQVQIDDAAICDTVFATLMGEEIEPRHDFIQENAKYAN--NIDI 648
>sp|Q9ZAQ6|GYRB_MYCAT DNA gyrase subunit B OS=Mycoplasma arthritidis GN=gyrB PE=3 SV=1
Length = 638
Score = 545 bits (1403), Expect = e-154, Method: Compositional matrix adjust.
Identities = 294/613 (47%), Positives = 402/613 (65%), Gaps = 30/613 (4%)
Query: 69 KENPVSKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYAS 128
K+ +SK YG++ IQ LEGLEAVRKRP MYIGS G RGLHHL++EI+DN+VDEA AG+A+
Sbjct: 3 KQEEISK-YGAKNIQFLEGLEAVRKRPGMYIGSIGFRGLHHLIWEIVDNSVDEAMAGFAT 61
Query: 129 NIEVALLADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGL 179
NIEV L +N I P+D+HP T KSA+ET+LTVL+AGGKF S+ Y VSGGL
Sbjct: 62 NIEVKLHPNNEIEVIDNGRGMPVDIHPTTKKSAVETILTVLYAGGKF--DSTNYKVSGGL 119
Query: 180 HGVGLSVVNALSESLEVTVWRDGMEYHQKY-SRGKPVTTLTCHVLPVDSKDRQGTRIRFW 238
HGVG+SVVNALS+S EV V R G Y+QKY + G PV L V+ +KD GTRI+F
Sbjct: 120 HGVGVSVVNALSDSFEVWVKRGGKFYYQKYINGGHPVKPL--EVIGEVNKDETGTRIKFH 177
Query: 239 PDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYV 298
PD Q+ + FD TI +++A+LN L+I+ D KN + F GG+ +YV
Sbjct: 178 PDYQIMD-KVAFDFGTIIDHAKQIAYLNKGLSISCE----DITKNTIRNFCFEGGIIDYV 232
Query: 299 QWLNTDKKPL-HDVV----GFRK---DVDGITIDLALQWCSDAYSDTMLGYANSIRTIDG 350
LN KK + D++ FR + + +++A+Q+ ++ Y+ ++ YAN+I+T +G
Sbjct: 233 SELNRGKKVIIPDIIYAEGTFRDKTPNAQDVIVNVAIQY-NETYTSNIVSYANNIQTGEG 291
Query: 351 GTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKT 410
GTH +G +LTR N + +K K+ + +S E ++GL IIS++ +P FEGQTK
Sbjct: 292 GTHEQGFYDALTRIYNKYAEDNKLFKNNNEKISREDTKDGLVAIISIKHTDPIFEGQTKG 351
Query: 411 RLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVL 470
+L N + R ++ + E L Y+ +P +I+ K L ++ LAA AR+ R+K
Sbjct: 352 KLENKDARIATNKIISEQLERYMAENPSHAKAIIEKCLLTQRSRLAANAAREASRKKEGS 411
Query: 471 RSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDE 530
+LPGKLADCSS E E+FIVEG+SAGGSAK GRDR QAILPLRGKI+N E++D
Sbjct: 412 EFGNLPGKLADCSSKNAEVRELFIVEGNSAGGSAKMGRDRATQAILPLRGKIINAEKQDF 471
Query: 531 AAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQ 590
++ N+E+ ++I ALG G+ E F L+YHKI+I+TDADVDGAHI TLLLTFFYRY
Sbjct: 472 TSVMSNKEVSSMIHALGTGITDE-FNINKLKYHKIVIMTDADVDGAHIATLLLTFFYRYM 530
Query: 591 KTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMP 650
+ L + G +Y+ PPLYK+ K +Y Y+DA+ +++ S + SIQR+KGLGEM P
Sbjct: 531 RPLIEYGFVYIAQPPLYKISTAKVTEYAYNDAQKEEILSKLEDSKNISIQRYKGLGEMDP 590
Query: 651 VQLWETTLNPEQR 663
QLWETT+NP R
Sbjct: 591 EQLWETTMNPATR 603
>sp|P0C5C5|GYRB_MYCTU DNA gyrase subunit B OS=Mycobacterium tuberculosis GN=gyrB PE=1
SV=1
Length = 675
Score = 544 bits (1401), Expect = e-153, Method: Compositional matrix adjust.
Identities = 302/674 (44%), Positives = 424/674 (62%), Gaps = 56/674 (8%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
YG+ I +LEGLEAVRKRP MYIGSTG RGLHHL++E++DNAVDEA AGYA+ + V LL
Sbjct: 12 YGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGYATTVNVVLLE 71
Query: 137 DNS---------IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 187
D IP+ H A+ ++ V+T LHAGGKF S Y++SGGLHGVG+SVV
Sbjct: 72 DGGVEVADDGRGIPVATH-ASGIPTVDVVMTQLHAGGKF--DSDAYAISGGLHGVGVSVV 128
Query: 188 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 247
NALS LEV + RDG E+ Q Y + +P+ P + G+ +RFW D VF T
Sbjct: 129 NALSTRLEVEIKRDGYEWSQVYEKSEPLGLKQG--APTK---KTGSTVRFWADPAVFETT 183
Query: 248 IQFDHNTIAGRIRELAFLNPKLTIALRKE----------------------------DSD 279
++D T+A R++E+AFLN LTI L E +
Sbjct: 184 -EYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTA 242
Query: 280 PEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTM 338
P K + + + GGL ++V+ +N K +H +V F G +++A+QW + YS+++
Sbjct: 243 PHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNA-GYSESV 301
Query: 339 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVR 398
+AN+I T +GGTH EG +++LT +N K K +KDKD +L+G+ +REGL +ISV+
Sbjct: 302 HTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVK 361
Query: 399 VPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAK 458
V P+FEGQTKT+LGN EV+ V + E LT + E +P +++K++S+ +A +AA+
Sbjct: 362 VSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAAR 421
Query: 459 RARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPL 518
+AR+LVR+KS LPGKLADC ST P +SE+++VEGDSAGGSAK GRD FQAILPL
Sbjct: 422 KARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPL 481
Query: 519 RGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHI 578
RGKI+NVE+ + KN E+Q +I ALG G+ E F LRYHKI+++ DADVDG HI
Sbjct: 482 RGKIINVEKARIDRVLKNTEVQAIITALGTGIHDE-FDIGKLRYHKIVLMADADVDGQHI 540
Query: 579 RTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE-RGKQVQYCYDDAELK-----KVKSSFP 632
TLLLT +R+ + L + G +++ PPLYK++ + ++ Y D E +K+
Sbjct: 541 STLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKK 600
Query: 633 SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRK 692
N IQR+KGLGEM +LWETT++P R+L+Q+ ++DAA A+ +FS LMG VD R+
Sbjct: 601 INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARR 660
Query: 693 ELI-QNAANLVNLD 705
I +NA ++ LD
Sbjct: 661 SFITRNAKDVRFLD 674
>sp|A5TY73|GYRB_MYCTA DNA gyrase subunit B OS=Mycobacterium tuberculosis (strain ATCC
25177 / H37Ra) GN=gyrB PE=3 SV=2
Length = 675
Score = 544 bits (1401), Expect = e-153, Method: Compositional matrix adjust.
Identities = 302/674 (44%), Positives = 424/674 (62%), Gaps = 56/674 (8%)
Query: 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136
YG+ I +LEGLEAVRKRP MYIGSTG RGLHHL++E++DNAVDEA AGYA+ + V LL
Sbjct: 12 YGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGYATTVNVVLLE 71
Query: 137 DNS---------IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVV 187
D IP+ H A+ ++ V+T LHAGGKF S Y++SGGLHGVG+SVV
Sbjct: 72 DGGVEVADDGRGIPVATH-ASGIPTVDVVMTQLHAGGKF--DSDAYAISGGLHGVGVSVV 128
Query: 188 NALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTA 247
NALS LEV + RDG E+ Q Y + +P+ P + G+ +RFW D VF T
Sbjct: 129 NALSTRLEVEIKRDGYEWSQVYEKSEPLGLKQG--APTK---KTGSTVRFWADPAVFETT 183
Query: 248 IQFDHNTIAGRIRELAFLNPKLTIALRKE----------------------------DSD 279
++D T+A R++E+AFLN LTI L E +
Sbjct: 184 -EYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTA 242
Query: 280 PEKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTM 338
P K + + + GGL ++V+ +N K +H +V F G +++A+QW + YS+++
Sbjct: 243 PHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNA-GYSESV 301
Query: 339 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVR 398
+AN+I T +GGTH EG +++LT +N K K +KDKD +L+G+ +REGL +ISV+
Sbjct: 302 HTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVK 361
Query: 399 VPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAK 458
V P+FEGQTKT+LGN EV+ V + E LT + E +P +++K++S+ +A +AA+
Sbjct: 362 VSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAAR 421
Query: 459 RARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPL 518
+AR+LVR+KS LPGKLADC ST P +SE+++VEGDSAGGSAK GRD FQAILPL
Sbjct: 422 KARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPL 481
Query: 519 RGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHI 578
RGKI+NVE+ + KN E+Q +I ALG G+ E F LRYHKI+++ DADVDG HI
Sbjct: 482 RGKIINVEKARIDRVLKNTEVQAIITALGTGIHDE-FDIGKLRYHKIVLMADADVDGQHI 540
Query: 579 RTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVE-RGKQVQYCYDDAELK-----KVKSSFP 632
TLLLT +R+ + L + G +++ PPLYK++ + ++ Y D E +K+
Sbjct: 541 STLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKK 600
Query: 633 SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRK 692
N IQR+KGLGEM +LWETT++P R+L+Q+ ++DAA A+ +FS LMG VD R+
Sbjct: 601 INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARR 660
Query: 693 ELI-QNAANLVNLD 705
I +NA ++ LD
Sbjct: 661 SFITRNAKDVRFLD 674
>sp|P66939|PARE_STAAN DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain
N315) GN=parE PE=1 SV=1
Length = 663
Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust.
Identities = 290/639 (45%), Positives = 409/639 (64%), Gaps = 31/639 (4%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y + IQVLEGLEAVRKRP MYIGST RGLHHLVYEI+DN+VDE GY + I+V +
Sbjct: 6 NYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTIN 65
Query: 136 ADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 186
D SI P +H + K +E + TVLHAGGKFG GY SGGLHGVG SV
Sbjct: 66 KDGSISIEDNGRGMPTGIHKS-GKPTVEVIFTVLHAGGKFG--QGGYKTSGGLHGVGASV 122
Query: 187 VNALSESLEVTVWRDGMEYHQKYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 245
VNALSE LEV + RDG YHQ + G P + L + T++ F PD +F
Sbjct: 123 VNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTG----TKVTFKPDDTIFK 178
Query: 246 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 305
+ F+ + ++ R++E AFL L I L S E+ ++ Y + G++E+V ++N K
Sbjct: 179 ASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEH--YHYEEGIKEFVSYVNEGK 236
Query: 306 KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 365
+ LHDV F + +GI +D+A Q+ +D YS+++L + N++RT DGGTH G K ++TR
Sbjct: 237 EVLHDVATFSGEANGIEVDVAFQY-NDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVF 295
Query: 366 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQ 423
N ++ +K KD +L G +REGLT ++SVR+P +FEGQTK++LG E R VD
Sbjct: 296 NDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDS 355
Query: 424 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVR--QKSVLRSSSLPGKLAD 481
V + L YLE + S++ K++ A +A AA++AR+ R +K+ + + L GKL
Sbjct: 356 VVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTP 415
Query: 482 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 541
S E++E+++VEGDSAGGSAK GRDR+FQAILPLRGK++N E+ ++KNEEI
Sbjct: 416 AQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINT 475
Query: 542 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 601
+I +G GV G DFK E Y+++II+TDAD DGAHI+ LLLTFF++Y K L G +++
Sbjct: 476 IIHTIGAGV-GTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFI 534
Query: 602 GVPPLYKVERG----KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETT 657
+PPLYK+E+G K+V+Y + D EL K++ +++QR+KGLGEM P QLWETT
Sbjct: 535 ALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKG--FTLQRYKGLGEMNPEQLWETT 592
Query: 658 LNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 696
+NPE R L ++ +ED ++ ++LMG +V R+E I+
Sbjct: 593 MNPETRTLIRVQVEDEVRSSKRVTTLMGDKVQPRREWIE 631
>sp|P66938|PARE_STAAM DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=parE PE=3 SV=1
Length = 663
Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust.
Identities = 290/639 (45%), Positives = 409/639 (64%), Gaps = 31/639 (4%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y + IQVLEGLEAVRKRP MYIGST RGLHHLVYEI+DN+VDE GY + I+V +
Sbjct: 6 NYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTIN 65
Query: 136 ADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 186
D SI P +H + K +E + TVLHAGGKFG GY SGGLHGVG SV
Sbjct: 66 KDGSISIEDNGRGMPTGIHKS-GKPTVEVIFTVLHAGGKFG--QGGYKTSGGLHGVGASV 122
Query: 187 VNALSESLEVTVWRDGMEYHQKYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 245
VNALSE LEV + RDG YHQ + G P + L + T++ F PD +F
Sbjct: 123 VNALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTG----TKVTFKPDDTIFK 178
Query: 246 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 305
+ F+ + ++ R++E AFL L I L S E+ ++ Y + G++E+V ++N K
Sbjct: 179 ASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEH--YHYEEGIKEFVSYVNEGK 236
Query: 306 KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 365
+ LHDV F + +GI +D+A Q+ +D YS+++L + N++RT DGGTH G K ++TR
Sbjct: 237 EVLHDVATFSGEANGIEVDVAFQY-NDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVF 295
Query: 366 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQ 423
N ++ +K KD +L G +REGLT ++SVR+P +FEGQTK++LG E R VD
Sbjct: 296 NDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDS 355
Query: 424 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVR--QKSVLRSSSLPGKLAD 481
V + L YLE + S++ K++ A +A AA++AR+ R +K+ + + L GKL
Sbjct: 356 VVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTP 415
Query: 482 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 541
S E++E+++VEGDSAGGSAK GRDR+FQAILPLRGK++N E+ ++KNEEI
Sbjct: 416 AQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINT 475
Query: 542 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 601
+I +G GV G DFK E Y+++II+TDAD DGAHI+ LLLTFF++Y K L G +++
Sbjct: 476 IIHTIGAGV-GTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFI 534
Query: 602 GVPPLYKVERG----KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETT 657
+PPLYK+E+G K+V+Y + D EL K++ +++QR+KGLGEM P QLWETT
Sbjct: 535 ALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKG--FTLQRYKGLGEMNPEQLWETT 592
Query: 658 LNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 696
+NPE R L ++ +ED ++ ++LMG +V R+E I+
Sbjct: 593 MNPETRTLIRVQVEDEVRSSKRVTTLMGDKVQPRREWIE 631
>sp|P0A0K9|PARE_STAAW DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain MW2)
GN=parE PE=3 SV=1
Length = 663
Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust.
Identities = 290/639 (45%), Positives = 409/639 (64%), Gaps = 31/639 (4%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y + IQVLEGLEAVRKRP MYIGST RGLHHLVYEI+DN+VDE GY + I+V +
Sbjct: 6 NYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTIN 65
Query: 136 ADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 186
D SI P +H + K +E + TVLHAGGKFG GY SGGLHGVG SV
Sbjct: 66 KDGSISIEDNGRGMPTGIHKS-GKPTVEVIFTVLHAGGKFG--QGGYKTSGGLHGVGASV 122
Query: 187 VNALSESLEVTVWRDGMEYHQKYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 245
VNALSE LEV + RDG YHQ + G P + L + T++ F PD +F
Sbjct: 123 VNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTG----TKVTFKPDDTIFK 178
Query: 246 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 305
+ F+ + ++ R++E AFL L I L S E+ ++ Y + G++E+V ++N K
Sbjct: 179 ASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEH--YHYEEGIKEFVSYVNEGK 236
Query: 306 KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 365
+ LHDV F + +GI +D+A Q+ +D YS+++L + N++RT DGGTH G K ++TR
Sbjct: 237 EVLHDVATFSGEANGIEVDVAFQY-NDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVF 295
Query: 366 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQ 423
N ++ +K KD +L G +REGLT ++SVR+P +FEGQTK++LG E R VD
Sbjct: 296 NDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDS 355
Query: 424 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVR--QKSVLRSSSLPGKLAD 481
V + L YLE + S++ K++ A +A AA++AR+ R +K+ + + L GKL
Sbjct: 356 VVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTP 415
Query: 482 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 541
S E++E+++VEGDSAGGSAK GRDR+FQAILPLRGK++N E+ ++KNEEI
Sbjct: 416 AQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINT 475
Query: 542 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 601
+I +G GV G DFK E Y+++II+TDAD DGAHI+ LLLTFF++Y K L G +++
Sbjct: 476 IIHTIGAGV-GTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFI 534
Query: 602 GVPPLYKVERG----KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETT 657
+PPLYK+E+G K+V+Y + D EL K++ +++QR+KGLGEM P QLWETT
Sbjct: 535 ALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKG--FTLQRYKGLGEMNPEQLWETT 592
Query: 658 LNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 696
+NPE R L ++ +ED ++ ++LMG +V R+E I+
Sbjct: 593 MNPETRTLIRVQVEDEVRSSKRVTTLMGDKVQPRREWIE 631
>sp|P0C1S7|PARE_STAAU DNA topoisomerase 4 subunit B OS=Staphylococcus aureus GN=parE PE=3
SV=1
Length = 663
Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust.
Identities = 290/639 (45%), Positives = 409/639 (64%), Gaps = 31/639 (4%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y + IQVLEGLEAVRKRP MYIGST RGLHHLVYEI+DN+VDE GY + I+V +
Sbjct: 6 NYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTIN 65
Query: 136 ADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 186
D SI P +H + K +E + TVLHAGGKFG GY SGGLHGVG SV
Sbjct: 66 KDGSISIEDNGRGMPTGIHKS-GKPTVEVIFTVLHAGGKFG--QGGYKTSGGLHGVGASV 122
Query: 187 VNALSESLEVTVWRDGMEYHQKYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 245
VNALSE LEV + RDG YHQ + G P + L + T++ F PD +F
Sbjct: 123 VNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTG----TKVTFKPDDTIFK 178
Query: 246 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 305
+ F+ + ++ R++E AFL L I L S E+ ++ Y + G++E+V ++N K
Sbjct: 179 ASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEH--YHYEEGIKEFVSYVNEGK 236
Query: 306 KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 365
+ LHDV F + +GI +D+A Q+ +D YS+++L + N++RT DGGTH G K ++TR
Sbjct: 237 EVLHDVATFSGEANGIEVDVAFQY-NDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVF 295
Query: 366 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQ 423
N ++ +K KD +L G +REGLT ++SVR+P +FEGQTK++LG E R VD
Sbjct: 296 NDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDS 355
Query: 424 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVR--QKSVLRSSSLPGKLAD 481
V + L YLE + S++ K++ A +A AA++AR+ R +K+ + + L GKL
Sbjct: 356 VVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTP 415
Query: 482 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 541
S E++E+++VEGDSAGGSAK GRDR+FQAILPLRGK++N E+ ++KNEEI
Sbjct: 416 AQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINT 475
Query: 542 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 601
+I +G GV G DFK E Y+++II+TDAD DGAHI+ LLLTFF++Y K L G +++
Sbjct: 476 IIHTIGAGV-GTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFI 534
Query: 602 GVPPLYKVERG----KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETT 657
+PPLYK+E+G K+V+Y + D EL K++ +++QR+KGLGEM P QLWETT
Sbjct: 535 ALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKG--FTLQRYKGLGEMNPEQLWETT 592
Query: 658 LNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 696
+NPE R L ++ +ED ++ ++LMG +V R+E I+
Sbjct: 593 MNPETRTLIRVQVEDEVRSSKRVTTLMGDKVQPRREWIE 631
>sp|Q5HG65|PARE_STAAC DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain COL)
GN=parE PE=3 SV=2
Length = 663
Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust.
Identities = 290/639 (45%), Positives = 409/639 (64%), Gaps = 31/639 (4%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y + IQVLEGLEAVRKRP MYIGST RGLHHLVYEI+DN+VDE GY + I+V +
Sbjct: 6 NYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTIN 65
Query: 136 ADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 186
D SI P +H + K +E + TVLHAGGKFG GY SGGLHGVG SV
Sbjct: 66 KDGSISIEDNGRGMPTGIHKS-GKPTVEVIFTVLHAGGKFG--QGGYKTSGGLHGVGASV 122
Query: 187 VNALSESLEVTVWRDGMEYHQKYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 245
VNALSE LEV + RDG YHQ + G P + L + T++ F PD +F
Sbjct: 123 VNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTG----TKVTFKPDDTIFK 178
Query: 246 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 305
+ F+ + ++ R++E AFL L I L S E+ ++ Y + G++E+V ++N K
Sbjct: 179 ASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEH--YHYEEGIKEFVSYVNEGK 236
Query: 306 KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 365
+ LHDV F + +GI +D+A Q+ +D YS+++L + N++RT DGGTH G K ++TR
Sbjct: 237 EVLHDVATFSGEANGIEVDVAFQY-NDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVF 295
Query: 366 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQ 423
N ++ +K KD +L G +REGLT ++SVR+P +FEGQTK++LG E R VD
Sbjct: 296 NDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDS 355
Query: 424 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVR--QKSVLRSSSLPGKLAD 481
V + L YLE + S++ K++ A +A AA++AR+ R +K+ + + L GKL
Sbjct: 356 VVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTP 415
Query: 482 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 541
S E++E+++VEGDSAGGSAK GRDR+FQAILPLRGK++N E+ ++KNEEI
Sbjct: 416 AQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINT 475
Query: 542 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 601
+I +G GV G DFK E Y+++II+TDAD DGAHI+ LLLTFF++Y K L G +++
Sbjct: 476 IIHTIGAGV-GTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFI 534
Query: 602 GVPPLYKVERG----KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETT 657
+PPLYK+E+G K+V+Y + D EL K++ +++QR+KGLGEM P QLWETT
Sbjct: 535 ALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKG--FTLQRYKGLGEMNPEQLWETT 592
Query: 658 LNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 696
+NPE R L ++ +ED ++ ++LMG +V R+E I+
Sbjct: 593 MNPETRTLIRVQVEDEVRSSKRVTTLMGDKVQPRREWIE 631
>sp|Q2FYS5|PARE_STAA8 DNA topoisomerase 4 subunit B OS=Staphylococcus aureus (strain NCTC
8325) GN=parE PE=3 SV=1
Length = 663
Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust.
Identities = 290/639 (45%), Positives = 409/639 (64%), Gaps = 31/639 (4%)
Query: 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135
Y + IQVLEGLEAVRKRP MYIGST RGLHHLVYEI+DN+VDE GY + I+V +
Sbjct: 6 NYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTIN 65
Query: 136 ADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSV 186
D SI P +H + K +E + TVLHAGGKFG GY SGGLHGVG SV
Sbjct: 66 KDGSISIEDNGRGMPTGIHKS-GKPTVEVIFTVLHAGGKFG--QGGYKTSGGLHGVGASV 122
Query: 187 VNALSESLEVTVWRDGMEYHQKYSRG-KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 245
VNALSE LEV + RDG YHQ + G P + L + T++ F PD +F
Sbjct: 123 VNALSEWLEVEIHRDGNIYHQSFKNGGSPSSGLVKKGKTKKTG----TKVTFKPDDTIFK 178
Query: 246 TAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 305
+ F+ + ++ R++E AFL L I L S E+ ++ Y + G++E+V ++N K
Sbjct: 179 ASTSFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEH--YHYEEGIKEFVSYVNEGK 236
Query: 306 KPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTL 365
+ LHDV F + +GI +D+A Q+ +D YS+++L + N++RT DGGTH G K ++TR
Sbjct: 237 EVLHDVATFSGEANGIEVDVAFQY-NDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVF 295
Query: 366 NSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNP--EFEGQTKTRLGNPEVRKVVDQ 423
N ++ +K KD +L G +REGLT ++SVR+P +FEGQTK++LG E R VD
Sbjct: 296 NDYARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDS 355
Query: 424 SVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVR--QKSVLRSSSLPGKLAD 481
V + L YLE + S++ K++ A +A AA++AR+ R +K+ + + L GKL
Sbjct: 356 VVADKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTP 415
Query: 482 CSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQN 541
S E++E+++VEGDSAGGSAK GRDR+FQAILPLRGK++N E+ ++KNEEI
Sbjct: 416 AQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINT 475
Query: 542 LIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYV 601
+I +G GV G DFK E Y+++II+TDAD DGAHI+ LLLTFF++Y K L G +++
Sbjct: 476 IIHTIGAGV-GTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFI 534
Query: 602 GVPPLYKVERG----KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETT 657
+PPLYK+E+G K+V+Y + D EL K++ +++QR+KGLGEM P QLWETT
Sbjct: 535 ALPPLYKLEKGKGKTKRVEYAWTDEELNKLQKELGKG--FTLQRYKGLGEMNPEQLWETT 592
Query: 658 LNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 696
+NPE R L ++ +ED ++ ++LMG +V R+E I+
Sbjct: 593 MNPETRTLIRVQVEDEVRSSKRVTTLMGDKVQPRREWIE 631
>sp|P50074|GYRBR_STRSH DNA gyrase subunit B, novobiocin-resistant OS=Streptomyces
spheroides GN=gyrBR PE=2 SV=1
Length = 677
Score = 543 bits (1399), Expect = e-153, Method: Compositional matrix adjust.
Identities = 312/667 (46%), Positives = 423/667 (63%), Gaps = 43/667 (6%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVA 133
+ +Y + I VL+GL+AVRKRP MYIGSTG RGLHHLV E++DN+VDEA AG A I+V
Sbjct: 23 TASYDANAITVLDGLDAVRKRPGMYIGSTGERGLHHLVQELVDNSVDEALAGVADRIDVT 82
Query: 134 LLADNS---------IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGL 184
+LAD IP+ +HP + A+E VLTVLHAGGKFGG G S LHGVGL
Sbjct: 83 VLADGGVRVVDNGRGIPVGMHPVEKRPAVEVVLTVLHAGGKFGGGGYGVSGG--LHGVGL 140
Query: 185 SVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVF 244
SVVNALS L +W DG + Q Y G P L H ++ R GT + FW D +F
Sbjct: 141 SVVNALSTRLSAEIWTDGHRWTQDYRDGAPTAPLARH----EATSRTGTSLTFWADGDIF 196
Query: 245 TTAIQFDHNTIAGRIRELAFLNPKLTIALRKE-------------DSDPEKNQYNEYFFA 291
T ++ T+A R +E+AFLN LT+ L E DSDP + Y +
Sbjct: 197 ETT-EYSFETLARRHQEMAFLNGGLTLTLTDERSSARATAAVDEADSDPTAKTVS-YRYD 254
Query: 292 GGLEEYVQWLNTDK-KPLHDVVGFRKDVDG---ITIDLALQWCSDAYSDTMLGYANSIRT 347
GG+ ++V LN K +P H V D ++ ++ALQW Y+D++ YAN+I T
Sbjct: 255 GGITDFVVHLNARKGEPAHPSVITIAAEDTERLLSAEIALQWNGQ-YTDSVYSYANAIHT 313
Query: 348 IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQ 407
+GGTH EG + +LT +N ++ + ++DKD +LSGE +REGLT IISV V P+FEGQ
Sbjct: 314 HEGGTHEEGFRTALTTVVNRYAREKRLLRDKDANLSGEDIREGLTAIISVNVGEPQFEGQ 373
Query: 408 TKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQK 467
TKT+LGN EVR ++ + V E+L ++ + +P+ I+ K++ A A +AA++ARDL R+K
Sbjct: 374 TKTKLGNTEVRTLLQKIVHEHLADWFDRNPNEAVDIVRKAVQAATARVAARKARDLTRRK 433
Query: 468 SVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVER 527
+L +++LPGKL+DC S P SEIFIVEGDSAGGSAK GR+ ++QAILP+RGKILNVE+
Sbjct: 434 GLLETAALPGKLSDCQSNDPATSEIFIVEGDSAGGSAKAGRNPQYQAILPIRGKILNVEK 493
Query: 528 KDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFY 587
+ +N+E Q LI A G GV EDF LRYHKII++ DADVDG HI TLLLTF +
Sbjct: 494 ARIDKVLQNQENQALISAFGTGVH-EDFDIAKLRYHKIILMADADVDGQHISTLLLTFLF 552
Query: 588 RYQKTLFDEGCIYVGVPPLYKVERGKQ-VQYCYDDAE----LKKVKSSFPSNALYSIQRF 642
R+ + L +EG +++ PPLYK++ ++ V+Y Y D E L++ + SIQRF
Sbjct: 553 RFMRPLVEEGHVHLSRPPLYKIKWSREHVEYAYSDRERNTLLERGRRDGRRIRDDSIQRF 612
Query: 643 KGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV 702
KGLGEM +L TT++P+ R+L Q+ ++DAA A+ +FS LMG V+ R+ IQ A V
Sbjct: 613 KGLGEMNAEELRVTTMDPDHRVLGQVTLDDAAFADDLFSVLMGEDVEARRHFIQRNAQDV 672
Query: 703 NLDHLDI 709
LDI
Sbjct: 673 RF--LDI 677
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 253,002,041
Number of Sequences: 539616
Number of extensions: 10721314
Number of successful extensions: 32682
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 31450
Number of HSP's gapped (non-prelim): 264
length of query: 709
length of database: 191,569,459
effective HSP length: 125
effective length of query: 584
effective length of database: 124,117,459
effective search space: 72484596056
effective search space used: 72484596056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)