Query 005193
Match_columns 709
No_of_seqs 207 out of 1678
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 18:13:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gfh_A DNA topoisomerase 2; to 100.0 7E-166 2E-170 1497.4 29.3 600 75-705 5-664 (1177)
2 3lnu_A Topoisomerase IV subuni 100.0 6E-110 2E-114 911.5 30.4 377 75-467 22-408 (408)
3 1ei1_A DNA gyrase B, GYRB; ATP 100.0 2E-103 8E-108 861.0 32.6 378 75-463 2-390 (391)
4 1s16_A Topoisomerase IV subuni 100.0 9E-100 3E-104 832.9 33.8 373 75-462 3-387 (390)
5 1pvg_A DNA topoisomerase II; G 100.0 7.6E-96 3E-100 805.5 23.3 353 74-458 9-416 (418)
6 3k9f_C DNA topoisomerase 4 sub 100.0 3.1E-96 1E-100 744.0 18.4 237 463-702 21-261 (268)
7 1kij_A DNA gyrase subunit B; t 100.0 1.4E-93 4.8E-98 784.8 30.5 376 76-463 2-389 (390)
8 3nuh_B DNA gyrase subunit B; t 100.0 3.5E-94 1.2E-98 769.0 14.8 249 459-709 3-420 (420)
9 1zxm_A TOPO IIA ATPase, DNA to 100.0 3E-93 1E-97 781.5 19.0 352 79-454 3-394 (400)
10 3m4i_A DNA gyrase subunit B; G 100.0 6.2E-92 2.1E-96 705.8 13.8 228 479-709 9-242 (242)
11 2xkj_E Topoisomerase IV; type 100.0 1.8E-86 6E-91 763.4 18.1 255 444-703 1-256 (767)
12 3cwv_A DNA gyrase, B subunit, 100.0 8.6E-85 2.9E-89 709.3 24.7 343 85-451 9-362 (369)
13 3l4j_A DNA topoisomerase 2; to 100.0 1.9E-76 6.5E-81 673.4 15.1 229 473-705 4-244 (757)
14 3qx3_A DNA topoisomerase 2-bet 100.0 7.8E-76 2.7E-80 668.9 10.6 221 473-699 34-267 (803)
15 2xcs_B DNA gyrase subunit B, D 100.0 1.7E-72 5.7E-77 640.8 13.3 196 472-702 3-198 (692)
16 4duh_A DNA gyrase subunit B; s 100.0 1.3E-64 4.5E-69 514.1 10.8 207 76-292 4-220 (220)
17 4emv_A DNA topoisomerase IV, B 100.0 1.7E-63 6E-68 507.2 8.6 208 75-292 9-226 (226)
18 3ttz_A DNA gyrase subunit B; p 100.0 1.6E-53 5.5E-58 426.6 7.3 187 77-294 2-198 (198)
19 3fv5_A DNA topoisomerase 4 sub 100.0 1.6E-50 5.5E-55 406.2 11.3 192 87-290 1-201 (201)
20 2q2e_B Type 2 DNA topoisomeras 100.0 1E-35 3.6E-40 341.4 -1.6 301 81-434 12-334 (621)
21 2zbk_B Type 2 DNA topoisomeras 99.8 1.6E-20 5.6E-25 212.8 -2.1 279 81-403 6-310 (530)
22 1b63_A MUTL; DNA mismatch repa 99.7 2.4E-17 8.2E-22 177.3 12.1 278 81-405 4-302 (333)
23 3na3_A DNA mismatch repair pro 99.7 1.4E-16 4.8E-21 171.7 16.1 282 79-405 6-305 (348)
24 3h4l_A DNA mismatch repair pro 99.7 1.6E-15 5.4E-20 164.8 17.9 274 81-405 5-328 (367)
25 1mu5_A Type II DNA topoisomera 99.6 5.3E-14 1.8E-18 157.7 20.6 314 80-424 6-444 (471)
26 1h7s_A PMS1 protein homolog 2; 99.6 2.9E-14 9.8E-19 155.1 15.9 275 80-405 13-333 (365)
27 2ior_A Chaperone protein HTPG; 95.8 0.0096 3.3E-07 60.5 5.8 153 108-274 49-231 (235)
28 2wer_A ATP-dependent molecular 94.8 0.069 2.4E-06 53.5 8.3 161 108-278 28-212 (220)
29 1yc1_A HSP 86, heat shock prot 94.5 0.069 2.3E-06 55.2 7.8 160 108-278 70-253 (264)
30 2gqp_A Endoplasmin; GRP94, HSP 94.5 0.099 3.4E-06 53.1 8.7 163 107-278 33-222 (236)
31 3t0h_A Heat shock protein HSP 94.3 0.09 3.1E-06 53.2 7.8 159 108-277 34-216 (228)
32 3o0i_A HSP90AA1 protein; HSP90 93.6 0.1 3.4E-06 53.8 6.8 159 108-277 62-244 (256)
33 3peh_A Endoplasmin homolog; st 92.9 0.29 9.8E-06 51.0 8.9 158 108-278 48-233 (281)
34 2ioq_A Chaperone protein HTPG; 92.7 0.52 1.8E-05 54.3 11.6 153 108-271 29-210 (624)
35 1y4s_A Chaperone protein HTPG; 92.1 0.42 1.4E-05 54.4 9.8 153 108-271 29-210 (559)
36 3nmq_A Heat shock protein HSP 90.6 0.34 1.2E-05 49.3 6.3 159 108-278 41-224 (239)
37 1qy5_A Endoplasmin; GRP94, NEC 90.4 0.31 1.1E-05 50.5 5.9 161 108-278 30-218 (269)
38 1th8_A Anti-sigma F factor; SP 87.6 0.29 9.8E-06 44.5 2.9 94 105-209 38-136 (145)
39 2o1u_A Endoplasmin; GRP94, HSP 87.3 1.2 4.2E-05 51.5 8.6 157 108-275 47-232 (666)
40 2zbk_B Type 2 DNA topoisomeras 86.1 4.8 0.00017 45.4 12.5 100 321-435 350-457 (530)
41 2cg9_A ATP-dependent molecular 85.7 1.5 5.1E-05 50.9 8.2 155 108-273 28-207 (677)
42 3a0y_A Sensor protein; ATP-LID 76.0 4.2 0.00014 36.3 6.1 33 104-138 45-77 (152)
43 3zxo_A Redox sensor histidine 75.9 0.97 3.3E-05 39.7 1.7 62 106-194 43-104 (129)
44 1bxd_A ENVZ(290-450), protein 71.5 3.5 0.00012 37.6 4.4 94 103-209 44-147 (161)
45 2q8g_A [pyruvate dehydrogenase 65.5 2.5 8.7E-05 45.5 2.4 89 105-194 242-340 (407)
46 3jz3_A Sensor protein QSEC; he 65.4 3.7 0.00013 39.0 3.3 71 105-194 116-194 (222)
47 1id0_A PHOQ histidine kinase; 64.3 6 0.0002 35.4 4.3 31 103-137 41-71 (152)
48 3zxq_A Hypoxia sensor histidin 62.3 3.3 0.00011 35.9 2.1 28 106-136 39-66 (124)
49 4ew8_A Sensor protein DIVL; si 60.7 9.9 0.00034 37.4 5.6 31 105-137 154-184 (268)
50 1r62_A Nitrogen regulation pro 60.6 5.9 0.0002 35.5 3.6 32 103-135 45-76 (160)
51 3ke6_A Protein RV1364C/MT1410; 58.3 14 0.00049 39.6 6.7 84 107-210 298-384 (399)
52 2q2e_B Type 2 DNA topoisomeras 58.0 27 0.00091 40.2 9.1 93 321-424 353-451 (621)
53 3sl2_A Sensor histidine kinase 56.8 2.8 9.6E-05 39.0 0.7 23 103-125 40-62 (177)
54 1gkz_A [3-methyl-2-oxobutanoat 55.6 3.9 0.00013 43.6 1.6 33 104-136 236-274 (388)
55 2btz_A Pyruvate dehydrogenase 53.6 2 6.8E-05 46.1 -1.1 89 104-194 229-327 (394)
56 3a0r_A Sensor protein; four he 53.1 11 0.00037 38.5 4.5 30 105-136 243-272 (349)
57 3ehg_A Sensor kinase (YOCF pro 50.9 17 0.0006 31.7 4.9 30 105-137 39-68 (128)
58 2c2a_A Sensor histidine kinase 50.1 7.2 0.00024 38.4 2.4 33 103-135 135-168 (258)
59 2e0a_A Pyruvate dehydrogenase 48.7 7.2 0.00025 41.7 2.3 89 105-194 229-327 (394)
60 1t6t_1 Putative protein; struc 36.4 11 0.00037 34.1 1.0 27 561-587 60-87 (118)
61 3ehh_A Sensor kinase (YOCF pro 34.2 32 0.0011 32.5 4.1 30 106-138 130-159 (218)
62 1y8o_A [pyruvate dehydrogenase 30.4 6.3 0.00022 42.6 -1.8 89 105-194 252-351 (419)
63 2fcj_A Small toprim domain pro 25.8 18 0.00062 32.7 0.6 55 561-630 49-103 (119)
64 3ied_A Heat shock protein; HSP 22.7 94 0.0032 31.9 5.3 66 176-242 174-242 (272)
65 1ysr_A Sensor-type histidine k 22.3 59 0.002 28.6 3.5 30 104-136 44-73 (150)
66 4h62_V Mediator of RNA polymer 21.0 56 0.0019 21.7 2.1 18 108-125 11-28 (31)
No 1
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-166 Score=1497.43 Aligned_cols=600 Identities=24% Similarity=0.350 Sum_probs=493.2
Q ss_pred CCCCcccceeccChhhHhhCCCeeeccCCCC-----------------------chhHHHHHHHHhhHHhhccCC-CCeE
Q 005193 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPR-----------------------GLHHLVYEILDNAVDEAQAGY-ASNI 130 (709)
Q Consensus 75 ~~Y~~~~Iq~L~glE~VrkRPgMYIGst~~~-----------------------GL~hlv~EIldNavDe~~~g~-~~~I 130 (709)
..|.+++||+|+||||||||||||||||++. ||||||||||||||||+++|+ |+.|
T Consensus 5 ~~~~~~~yq~L~~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~I 84 (1177)
T 4gfh_A 5 PVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRI 84 (1177)
T ss_dssp --CHHHHSEECCHHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEE
T ss_pred CCchhhcccccccchhhhcCCCCccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCeE
Confidence 3477889999999999999999999999865 999999999999999999997 6899
Q ss_pred EEEEec-CCc---------cccccCCCCCccceEEEEeeeccCCCCCCCCCceeeccCcccccceeeeeecceeEEEEE-
Q 005193 131 EVALLA-DNS---------IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW- 199 (709)
Q Consensus 131 ~V~i~~-Dgs---------IPvd~h~~~g~~~~E~v~t~LhaGgkFd~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~- 199 (709)
+|+||. ||+ ||||+||++|+|+||+|||+||||||||++ +|++||||||||+|||||||++|.|+|+
T Consensus 85 ~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~--~ykvSGGLHGVG~svVNALS~~~~vev~~ 162 (1177)
T 4gfh_A 85 DVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTEFILETAD 162 (1177)
T ss_dssp EEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCS--SCCCCSCCSSCHHHHHHHTEEEEEEEEEE
T ss_pred EEEEECCCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCC--CCeEeccCCChhhhHHhhcCCceEEEEEE
Confidence 999994 776 999999999999999999999999999998 9999999999999999999999999985
Q ss_pred -eCCEEEEEEccCCCCCcceeeeccCCCCCCCCCeEEEEEcCcccccccccCCHHHHHHHHHHHhhcC---CCcEEEEee
Q 005193 200 -RDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN---PKLTIALRK 275 (709)
Q Consensus 200 -r~Gk~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~Ln---pGL~I~l~d 275 (709)
|+|+.|+|+|++|+++.+++.+ ...+.+++||+|+||||++||++ ..|+++++..|++++|+|| +++.+.+++
T Consensus 163 ~r~Gk~y~q~f~~g~~~~~~~~i--~~~~~~~tGT~V~F~PD~~iF~~-~~~~~d~l~~~~r~~~~l~~~~~~~~~~~~g 239 (1177)
T 4gfh_A 163 LNVGQKYVQKWENNMSICHPPKI--TSYKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYLNG 239 (1177)
T ss_dssp TTTTEEEEEEEETTTTEECCCEE--EECCSSCCCEEEEEEECHHHHTC-SSCCHHHHHHHHHHHHHHHHHSSSCEEEESS
T ss_pred EcCCEEEEEEEECCcccCCCCee--ecCCCCCCceEEEEEeCHHhcCC-cEeCHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 8999999999999999887654 22345679999999999999986 4799999999999999887 457789998
Q ss_pred cCCCCCcCcceeEeecccHHHHHHHHhcCCCCCC--------ceeEEEEeecCeEEEEEEEEcCCCCCceeeeeeCceec
Q 005193 276 EDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH--------DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRT 347 (709)
Q Consensus 276 er~~~~~~~~e~f~~~~Gl~dyv~~l~~~~~~l~--------~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T 347 (709)
++. +.++|++|+.+|++.++..+..++ +...+..+..+..||||++|+ +++ .+++||||+|+|
T Consensus 240 ~~~-------~~~~f~~gi~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~eva~~~~-d~~-~~~~SFvN~I~T 310 (1177)
T 4gfh_A 240 KSL-------KIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVS-DIS-FQQISFVNSIAT 310 (1177)
T ss_dssp CBC-------CCCSHHHHHGGGTTTC-----------------CCSCEEEEEETTEEEEEEEC-SSS-CEEEEEESSCEE
T ss_pred Cee-------EEeeccchhhhhhhhhccceeccccccccccCCCceEEEEeccceEEEeeccc-CCc-ceeeeeeeeeec
Confidence 764 467889999999988876554322 112233445556799999998 444 346899999999
Q ss_pred CCCccchHHHHHHHHHHHHHHHhhcccCCCCCCCCCHhhhccceEEEEEEeecCCCCCCccccccCCchhhhhhhhhH-H
Q 005193 348 IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSV-Q 426 (709)
Q Consensus 348 ~~GGTHv~g~~~altr~ln~~~kk~~~~K~k~~~l~~~dIregL~~vVsvki~nP~FegQTK~kL~n~ev~~~v~~~v-~ 426 (709)
++||||++||++||+++||+|+++++. .+++++||||||++||||+|+||+|+||||+||+|+.....+...+ .
T Consensus 311 ~~GGTHv~gfr~altr~in~~~~k~~~-----~~~~~~DIregl~avISvki~~PqFegQTK~kL~s~~~~~~~~~~~~~ 385 (1177)
T 4gfh_A 311 TMGGTHVNYITDQIVKKISEILKKKKK-----KSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKDFGSRCEIPL 385 (1177)
T ss_dssp TTEEHHHHHHHHHHHHHHHHHHHHHSS-----SCCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGGGSSSCCCCCH
T ss_pred CCCchHHHHHHHHHHHHHHHHhhhhcc-----ccCCHHHHhCCceEEEEeeeccCccccchhhhhcCchhcceeeccchH
Confidence 999999999999999999999876543 4699999999999999999999999999999999986544333222 2
Q ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCC---CCCCCCceEEEeecCCCCcc
Q 005193 427 EYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCS---STTPEESEIFIVEGDSAGGS 503 (709)
Q Consensus 427 ~~l~~~le~np~~~~~I~~k~~~~~kar~aakkare~~r~k~~~~~~~lpgKL~Dc~---~~~~~~~eL~lvEGDSA~Gs 503 (709)
+.+..+++ . .|+++++.++++++++++++...++|+.+ ..+ +||+||+ ++|+++||||||||||||||
T Consensus 386 ~~~~~~~~--~----~i~~~~~~~a~~~~~~~~~k~~~~~k~~~--~~~-~KL~d~~~~~skd~~~~ELfiVEGDSAgGs 456 (1177)
T 4gfh_A 386 EYINKIMK--T----DLATRMFEIADANEENALKKSDGTRKSRI--TNY-PKLEDANKAGTKEGYKCTLVLTEGDSALSL 456 (1177)
T ss_dssp HHHHHHTT--S----HHHHHHHHHHTTCC------------CCC--CSC-TTCBCCTTTTTTTTTTCEEEEEEHHHHHHH
T ss_pred HHhhhhhh--H----HHHHHHHHHHHHHHHHHHHhhhhhcchhh--ccc-cccccccccCCCCccceEEEEecCCchhhh
Confidence 33333332 2 34555555555554444444444455433 223 4999987 68999999999999999999
Q ss_pred ccccC---CCCceEeeccCcccccccccCHHHhhhcHhHHHHHHHhcCCccCCcCccccccceeEEEeecCCCCCchhhh
Q 005193 504 AKQGR---DRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRT 580 (709)
Q Consensus 504 ak~gR---dr~~qailPLRGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRYgkIiImTDaDvDG~HI~~ 580 (709)
||+|| +|+||||||||||||||++|+.+||++|+||++||+|||||++.+.+|+++||||||||||||||||+||||
T Consensus 457 Ak~Grak~~Rd~QAIlPLRGKiLNv~ka~~~kil~N~EI~~ii~alG~g~g~~~~d~~~LRY~KIiIMTDADvDGsHIrt 536 (1177)
T 4gfh_A 457 AVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKG 536 (1177)
T ss_dssp HHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHHTTCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHH
T ss_pred HhhcccccCcccEEecccCceechhhhhHHHHHhhcHHHHHHHHHhCCCcCcccCccccCCCCeEEEeecCCCCcchHHH
Confidence 99999 889999999999999999999999999999999999999999655559999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhh-cCcEEEecCCeEEEEeC---CeEEEeeCHHHHHHHHHhCCCCCcccceEeeccccCChhhhHhh
Q 005193 581 LLLTFFYRYQKTLFD-EGCIYVGVPPLYKVERG---KQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWET 656 (709)
Q Consensus 581 Llltff~~~~p~Li~-~G~i~~~~tPL~kv~~g---k~~~y~ys~~e~~~~~~~~~~~~~~~iqryKGLGem~~~q~~et 656 (709)
|||||||||||+||+ +||||+|+||||||+.| |+.+|||+++|+++|++..+..++|+||||||||||||+|||||
T Consensus 537 LLltfF~r~~p~Lie~~G~vyia~pPLykv~~~k~~k~~~~~y~~~e~e~~~~~~~~~~~~~iqryKGLGEm~~~ql~Et 616 (1177)
T 4gfh_A 537 LIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFTWKQKYYKGLGTSLAQEVREY 616 (1177)
T ss_dssp HHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESSHHHHHHHHHHTGGGSCEEEEEC----CCCHHHHHHH
T ss_pred HHHHHHHHhChhhEeeCCEEEEEecceEEEEEecCCcceEEEechHHHHHHHHHhcCCCCcceeecccCCcccHHHHHHH
Confidence 999999999999999 99999999999999865 45789999999999998876666899999999999999999998
Q ss_pred hcCccce--eeeeeccccHHHHHHHHHHhcCCCchHHHHHHHhccccCCcC
Q 005193 657 TLNPEQR--MLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLD 705 (709)
Q Consensus 657 t~dp~~r--~l~~v~~~d~~~~~~~f~~lmg~~~~~RK~~i~~~~~~~~~~ 705 (709)
||||++| .+.+++.+|++.++++ |||+++++||+||++|++...++
T Consensus 617 t~~~d~~~~~~~~v~~~d~~~~d~~---f~~~~~~~RkewI~~~~~~~~~d 664 (1177)
T 4gfh_A 617 FSNLDRHLKIFHSLQGNDKDYIDLA---FSKKKADDRKEWLRQYEPGTVLD 664 (1177)
T ss_dssp HHTCTTTEEEEECCCTTTHHHHHHH---HCGGGHHHHHHHHHHCCTTCCCC
T ss_pred HhCcccceEEEEEcccccHHHHHHH---HhccchhhHHHHHHhcCcccccc
Confidence 8887754 4556667776655544 57899999999999999875543
No 2
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=100.00 E-value=6e-110 Score=911.53 Aligned_cols=377 Identities=33% Similarity=0.583 Sum_probs=313.1
Q ss_pred CCCCcccceeccChhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHhhccCCCCeEEEEEecCCc---------cccccC
Q 005193 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS---------IPIDLH 145 (709)
Q Consensus 75 ~~Y~~~~Iq~L~glE~VrkRPgMYIGst~~~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~Dgs---------IPvd~h 145 (709)
++|++++||+|+||||||||||||||||++ ||||||||||||||+++|+|+.|+|+|++||+ ||+++|
T Consensus 22 ~~Y~a~~I~vL~glE~VRkRPgMYiGst~~---~hlv~EivdNsiDea~ag~~~~I~V~i~~dgsI~V~DnGrGIPv~~h 98 (408)
T 3lnu_A 22 TRYNAADIEVLSGLDPVKRRPGMYTDTARP---NHLAQEVIDNSVDEALAGHAKQIEVTLYKDGSCEVSDDGRGMPVDIH 98 (408)
T ss_dssp ------------CCHHHHHCGGGTSCTTST---HHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSBC
T ss_pred CCcCHhHceeccccHHHhcCCccEECCCCc---chhhHHHHHHHHHHhhcCCCceEEEEEeCCCeEEEEEcCCCCCcccc
Confidence 479999999999999999999999999986 99999999999999999999999999998776 999999
Q ss_pred CCCCccceEEEEeeeccCCCCCCCCCceeeccCcccccceeeeeecceeEEEEEeCCEEEEEEccCCCCCcceeeeccCC
Q 005193 146 PATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPV 225 (709)
Q Consensus 146 ~~~g~~~~E~v~t~LhaGgkFd~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~Gk~y~q~f~~G~~~~~l~~~~~~~ 225 (709)
|++|+|++|+|||+|||||||+++ .|++||||||||+|||||||+||+|+|+|+|+.|+|+|++|+++.+++.+. .
T Consensus 99 ~~~~~~~~e~i~t~lhaggKfd~~--~ykvSgGlhGvG~svVNALS~~l~v~v~rdGk~~~q~f~~G~~~~~l~~ig--~ 174 (408)
T 3lnu_A 99 PEEKIPGVELILTRLHAGGKFNNR--NYTFSGGLHGVGVSVVNALSTKVELFIKREGSEHRMEFRDGNAASKLEVVG--T 174 (408)
T ss_dssp TTTCSBHHHHHHHCC----------------------CHHHHHHTEEEEEEEEEETTEEEEEEEETTEECSCCEEEE--E
T ss_pred cccCCcchheEEEecccCCCcCCC--ceeecCCccccccceehhccCeEEEEEEECCEEEEEEECCCEECCCceEec--c
Confidence 999999999999999999999988 999999999999999999999999999999999999999999999887551 1
Q ss_pred CCCCCCCeEEEEEcCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCcCcceeEeecccHHHHHHHHhcCC
Q 005193 226 DSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDK 305 (709)
Q Consensus 226 ~~~~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~LnpGL~I~l~der~~~~~~~~e~f~~~~Gl~dyv~~l~~~~ 305 (709)
....++||+|+||||+++|++ ..|++++|.+||+++|||||||+|.|+|+|.+ ..+.|+|+|||++||++++.++
T Consensus 175 ~~~~~~GT~V~F~PD~~iF~~-~~f~~~~l~~rlrelA~Ln~Gv~I~l~der~~----~~~~f~yegGi~~yv~~l~~~k 249 (408)
T 3lnu_A 175 VGKKNTGTRLRFWADPKYFDT-PKFNVRALRHLLRAKAVLCPGLTVKLHDEATG----EQDSWYFENGLRDYLKGEMAEH 249 (408)
T ss_dssp CCTTCCEEEEEEEECGGGSSC-SCCCHHHHHHHHHHHHHHSTTCEEEEEETTTC----CEEEEECSSSHHHHHHHHTTTS
T ss_pred CcCCCCCcEEEEEECHHHhCC-CCcCHHHHHHHHHHHHhhcCCCEEEEEeccCC----ceeEEEcCchHHHHHHHHhcCC
Confidence 223579999999999999974 57999999999999999999999999999964 3579999999999999999998
Q ss_pred CCCCceeEEEEeecC-eEEEEEEEEcCCCCCceeeeeeCceecCCCccchHHHHHHHHHHHHHHHhhcccCCCCCCCCCH
Q 005193 306 KPLHDVVGFRKDVDG-ITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSG 384 (709)
Q Consensus 306 ~~l~~~i~~~~~~~~-~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~altr~ln~~~kk~~~~K~k~~~l~~ 384 (709)
+++++.+++.++.++ +.|||||||+ ++|+++++||||||+|++||||++||++||+++||+|+++.+++|++ .++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~ve~Al~~~-~~~~e~~~SFvN~I~T~~GGTH~~gfr~altr~in~y~~~~~l~kk~-~~l~~ 327 (408)
T 3lnu_A 250 EMLPADLFVGSLKKDTEIVDWAAGWV-PEGELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRNLLPRG-VKLAP 327 (408)
T ss_dssp CCEEEEEEEEEEECSSCEEEEEEEEC-SSSCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCTT-CCCCH
T ss_pred CcCCCCCeEeeEecCceeEEEEEEEc-CCCCeEEEEEeCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhCcccCC-CCCCH
Confidence 877765556666677 9999999999 67999999999999999999999999999999999999998888865 89999
Q ss_pred hhhccceEEEEEEeecCCCCCCccccccCCchhhhhhhhhHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005193 385 EHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLV 464 (709)
Q Consensus 385 ~dIregL~~vVsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~le~np~~~~~I~~k~~~~~kar~aakkare~~ 464 (709)
+||||||++||||+|+||+|+||||+||+|++++.+|+++|.+.|..||++||++++.|++|++.+++||+ |||||++
T Consensus 328 ~DiregL~aviSvkv~~PqFegQTK~kL~n~ev~~~V~~~v~~~l~~~l~enp~~ak~i~~k~i~aa~aR~--rkare~~ 405 (408)
T 3lnu_A 328 EDVWDRVTFVLSLKMTDPQFSGQTKERLSSRQAAGFIEGAAHDAFSLYLNQNVEIGEKIAQIAIDRASARL--KTEKQIV 405 (408)
T ss_dssp HHHHTTEEEEEEEECSSCCEESTTSCEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHhhCeEEEEEEEcCCCcccCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 8999999
Q ss_pred hhc
Q 005193 465 RQK 467 (709)
Q Consensus 465 r~k 467 (709)
|||
T Consensus 406 rrK 408 (408)
T 3lnu_A 406 RKK 408 (408)
T ss_dssp ---
T ss_pred ccC
Confidence 876
No 3
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=2.4e-103 Score=861.03 Aligned_cols=378 Identities=44% Similarity=0.783 Sum_probs=357.2
Q ss_pred CCCCcccceeccChhhHhhCCCeeeccCCCC-chhHHHHHHHHhhHHhhccCCCCeEEEEEecCCc---------ccccc
Q 005193 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPR-GLHHLVYEILDNAVDEAQAGYASNIEVALLADNS---------IPIDL 144 (709)
Q Consensus 75 ~~Y~~~~Iq~L~glE~VrkRPgMYIGst~~~-GL~hlv~EIldNavDe~~~g~~~~I~V~i~~Dgs---------IPvd~ 144 (709)
.+|++++||+|+|+||||||||||||||++. ||||+|+||||||+||+++|+|+.|.|+|++||+ ||++.
T Consensus 2 ~~y~~~~i~~L~gle~vrkRPgmYiGst~~~~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g~I~V~DnG~GIp~~~ 81 (391)
T 1ei1_A 2 NSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGI 81 (391)
T ss_dssp CCCSGGGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSCEEEEECSSCCCCSB
T ss_pred CCCCHHHCEECchhHHHHcCCCeEECCCCCCcCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCCEEEEEECCCCcccCc
Confidence 3799999999999999999999999999998 9999999999999999999999999999998766 99999
Q ss_pred CCCCCccceEEEEeeeccCCCCCCCCCceeeccCcccccceeeeeecceeEEEEEeCCEEEEEEccCCCCCcceeeeccC
Q 005193 145 HPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLP 224 (709)
Q Consensus 145 h~~~g~~~~E~v~t~LhaGgkFd~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~Gk~y~q~f~~G~~~~~l~~~~~~ 224 (709)
||++|+|++|+|||+|||||||+++ .|++|||+||||+|+|||||++|+|+++|+|+.|+|+|++|+++.+++.+
T Consensus 82 ~~~~~~~~~elv~~~lhagsKf~~~--~~~vSgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~l~~~--- 156 (391)
T 1ei1_A 82 HPEEGVSAAEVIMTVLHAGGKFDDN--SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVT--- 156 (391)
T ss_dssp CTTTSSBHHHHHHHSTTEESCSSSS--SCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEE---
T ss_pred ccccCcchHHHhheeccccCCcCCC--cccccCCccccchHHHHHhcCeEEEEEEeCCcEEEEEEcCCcccccceec---
Confidence 9999999999999999999999987 99999999999999999999999999999999999999999998877544
Q ss_pred CCCCCCCCeEEEEEcCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCcCcceeEeecccHHHHHHHHhcC
Q 005193 225 VDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 304 (709)
Q Consensus 225 ~~~~~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~LnpGL~I~l~der~~~~~~~~e~f~~~~Gl~dyv~~l~~~ 304 (709)
+...++||+|+||||+++|++...|+++.|.+||+++|||||||+|.|+|++.+ ..+.|+|+|||++||.+++.+
T Consensus 157 -~~~~~~GT~V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~----~~~~f~~~gGl~~~v~~l~~~ 231 (391)
T 1ei1_A 157 -GETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDG----KEDHFHYEGGIKAFVEYLNKN 231 (391)
T ss_dssp -EECSCCEEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTC----CEEEECCCSHHHHHHHHHHHT
T ss_pred -cCcCCCccEEEEEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEEcCCCc----ceEEEEcCchHHHHHHHHcCC
Confidence 223579999999999999964157999999999999999999999999999853 357899999999999999998
Q ss_pred CCCCC-ceeEEEEeecCeEEEEEEEEcCCCCCceeeeeeCceecCCCccchHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 005193 305 KKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 383 (709)
Q Consensus 305 ~~~l~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~altr~ln~~~kk~~~~K~k~~~l~ 383 (709)
+++++ +++++.++.+++.||+|++|+ ++|.+.++||||+|+|.+||||++||+++|+++||+|+++.+++|+++.+++
T Consensus 232 ~~~~~~~~i~~~~~~~~i~veva~~~~-~~~~e~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~l~k~~~~~~~ 310 (391)
T 1ei1_A 232 KTPIHPNIFYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSAT 310 (391)
T ss_dssp SCBSSSCCEEEEEEETTEEEEEEEEEB-SSCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTHHHHHCCCCC
T ss_pred CcccccccEEEEEecCCEEEEEEEEcc-CCCCeeEEEEEcceecCCCCcHHHHHHHHHHHHHHHHHHHhCcccccCCccC
Confidence 88888 678888888999999999998 7898999999999999999999999999999999999999888887778999
Q ss_pred HhhhccceEEEEEEeecCCCCCCccccccCCchhhhhhhhhHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005193 384 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 463 (709)
Q Consensus 384 ~~dIregL~~vVsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~le~np~~~~~I~~k~~~~~kar~aakkare~ 463 (709)
++||||||++||||+|+||+|+||||+||+|++++.+|+++|.+.|..||++||++++.|++|++.+++||+|||||||+
T Consensus 311 ~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~aa~ar~aa~kare~ 390 (391)
T 1ei1_A 311 GDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM 390 (391)
T ss_dssp HHHHTTTEEEEEEEECSSCCBSSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccEEEEEEecCCCCcCCcccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
No 4
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=9.2e-100 Score=832.89 Aligned_cols=373 Identities=33% Similarity=0.569 Sum_probs=347.0
Q ss_pred CCCCcccceeccChhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHhhccCCCCeEEEEEecCCc---------cccccC
Q 005193 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS---------IPIDLH 145 (709)
Q Consensus 75 ~~Y~~~~Iq~L~glE~VrkRPgMYIGst~~~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~Dgs---------IPvd~h 145 (709)
.+|++++||+|+||||||||||||||||++ ||+|+||||||+||+++|+|+.|.|+|++||+ ||++.|
T Consensus 3 ~~y~~~~i~~L~gle~vr~RPgmYiGs~~~---~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g~I~V~DnG~GIp~~~~ 79 (390)
T 1s16_A 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIH 79 (390)
T ss_dssp -CCSGGGCEECCTTHHHHHCGGGTSCTTST---HHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBC
T ss_pred CCCCHHHcEEcchhHHHhhCCceeecCCcH---HHHHHHHHHHHHHHHhcCCCCEEEEEEecCCEEEEEECCCCcCcccc
Confidence 469999999999999999999999999998 99999999999999999999999999998666 999999
Q ss_pred CCCCccceEEEEeeeccCCCCCCCCCceeeccCcccccceeeeeecceeEEEEEeCCEEEEEEccCCCCCcceeeeccCC
Q 005193 146 PATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPV 225 (709)
Q Consensus 146 ~~~g~~~~E~v~t~LhaGgkFd~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~Gk~y~q~f~~G~~~~~l~~~~~~~ 225 (709)
|++|+|++|+|||+||||+||+++ .|++|||+||||+|+|||||++|+|+++|+|+.|+|+|++|+++.+++.+
T Consensus 80 ~~~~~~~~e~v~~~lhagsKf~~~--~~~~sgGl~GvGls~vnalS~~l~v~~~r~g~~~~~~~~~G~~~~~~~~~---- 153 (390)
T 1s16_A 80 PEEGVPAVELILCRLHAGGKFSNK--NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVV---- 153 (390)
T ss_dssp TTTCSBHHHHHHHCTTEESCSSSS--SCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEE----
T ss_pred cccCcchhhheeeeecccCCcCCC--cccccCCccccchHHHHHhhcccEEEEEECCcEEEEEEeCCcccccceec----
Confidence 999999999999999999999987 99999999999999999999999999999999999999999988777554
Q ss_pred CCC--CCCCeEEEEEcCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCcCcceeEeecccHHHHHHHHhc
Q 005193 226 DSK--DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNT 303 (709)
Q Consensus 226 ~~~--~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~LnpGL~I~l~der~~~~~~~~e~f~~~~Gl~dyv~~l~~ 303 (709)
+.. .++||+|+|+||+++|++ ..|+++.|.+||+++|+|||||+|.|+|++.+ ..+.|+|+|||.+||.+++.
T Consensus 154 g~~~~~~~GT~V~f~Pd~~~F~~-~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~----~~~~f~~~gGl~~~v~~l~~ 228 (390)
T 1s16_A 154 GTCGKRNTGTSVHFWPDETFFDS-PRFSVSRLTHVLKAKAVLCPGVEITFKDEINN----TEQRWCYQDGLNDYLAEAVN 228 (390)
T ss_dssp EECCTTCCEEEEEEEECGGGSSC-CSCCHHHHHHHHHHHHHHSTTCEEEEEETTTT----EEEEECCSSCHHHHHHHHHT
T ss_pred ccccCCCCceEEEEEECccccCc-ccccHHHHHHHHHHHHhcCCCcEEEEEeCCCc----eeEEEEcCCcHHHHHHHHhC
Confidence 222 379999999999999964 57999999999999999999999999999843 35789999999999999998
Q ss_pred CCCCCC-ceeEEEEeecCeEEEEEEEEcCCCCCceeeeeeCceecCCCccchHHHHHHHHHHHHHHHhhcccCCCCCCCC
Q 005193 304 DKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISL 382 (709)
Q Consensus 304 ~~~~l~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~altr~ln~~~kk~~~~K~k~~~l 382 (709)
++++++ +++++.++.+++.||+|++|+.++|++.++||||+|+|.+||||++||++||+++||+|+++++++| ++.++
T Consensus 229 ~~~~~~~~~i~~~~~~~~~~ve~a~~~~~~~~~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~~~k-~~~~l 307 (390)
T 1s16_A 229 GLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILP-RGVKL 307 (390)
T ss_dssp TSCCEEEEEEEEEEECSSEEEEEEEEECTTCCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSC-TTCCC
T ss_pred CCcccCCCcEEEEEeeCCEEEEEEEEeccCCCCceEEEEECCEecCCCCCHHHHHHHHHHHHHHHHHHHhCcCc-cCCcc
Confidence 877777 6788888888999999999933788899999999999999999999999999999999999999888 77899
Q ss_pred CHhhhccceEEEEEEeecCCCCCCccccccCCchhhhhhhhhHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005193 383 SGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARD 462 (709)
Q Consensus 383 ~~~dIregL~~vVsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~le~np~~~~~I~~k~~~~~kar~aakkare 462 (709)
+++||||||++||||+|+||+|+||||+||+|++++.+|+++|.+.|..||++||++++.|++|++.+++||+||+||||
T Consensus 308 ~~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~aa~aR~aa~kare 387 (390)
T 1s16_A 308 SAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV 387 (390)
T ss_dssp CHHHHHTTEEEEEEEEESSCCBSSTTCCCBCCTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CHHHHhhccEEEEEeecCCCCccccccchhcChhHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
No 5
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=100.00 E-value=7.6e-96 Score=805.47 Aligned_cols=353 Identities=21% Similarity=0.309 Sum_probs=295.5
Q ss_pred CCCCCcccceeccChhhHhhCCCeeeccCCC-----------------------CchhHHHHHHHHhhHHhhc-cCCCCe
Q 005193 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-----------------------RGLHHLVYEILDNAVDEAQ-AGYASN 129 (709)
Q Consensus 74 ~~~Y~~~~Iq~L~glE~VrkRPgMYIGst~~-----------------------~GL~hlv~EIldNavDe~~-~g~~~~ 129 (709)
+...-+++||+|+||||||||||||||||++ +|||||||||||||+||++ +|+|+.
T Consensus 9 ~~~~~e~~~~~L~glE~VrkRPgMYIGst~~~~~~~~v~e~~~~~~~~~~v~~~~GL~~lv~EivdNaiDe~~~~g~~~~ 88 (418)
T 1pvg_A 9 EPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKR 88 (418)
T ss_dssp ---CHHHHSEECCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCE
T ss_pred cccchhhheeecchhHHHhhCCCceEcccCCCcceeeeeeccccccccccccccchHHHHHHHHHhCHHHHHHhcCCCCE
Confidence 3345667999999999999999999999999 8999999999999999995 599999
Q ss_pred EEEEEecCC-c---------cccccCCCCCccceEEEEeeeccCCCCCCCCCceeeccCcccccceeeeeecceeEEEEE
Q 005193 130 IEVALLADN-S---------IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVW 199 (709)
Q Consensus 130 I~V~i~~Dg-s---------IPvd~h~~~g~~~~E~v~t~LhaGgkFd~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~ 199 (709)
|.|+|++|| + ||+++||++|+|++|+|||+||||||||++ +|++||||||||+|||||||+||+|+|+
T Consensus 89 I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~--~ykvSGGLhGVG~SvVNALS~~l~V~v~ 166 (418)
T 1pvg_A 89 IDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTEFILETA 166 (418)
T ss_dssp EEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTT--SCCCCSCCSSCHHHHHHHTEEEEEEEEE
T ss_pred EEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEecccccCCC--ceeccCCccceeeeeeeeccceEEEEEE
Confidence 999999884 4 999999999999999999999999999988 9999999999999999999999999999
Q ss_pred --eCCEEEEEEccCCC--CCcceeeeccCCCCCCCCCeEEEEEcCcccccccccCCHHH---HHHHHHHHhhcCCCcEEE
Q 005193 200 --RDGMEYHQKYSRGK--PVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNT---IAGRIRELAFLNPKLTIA 272 (709)
Q Consensus 200 --r~Gk~y~q~f~~G~--~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~fd~~~---l~~Rl~elA~LnpGL~I~ 272 (709)
|+|+.|+|+|++|+ +..| . + ......++||+|+||||++||++ ..|++++ |.+||||+|||||||+|+
T Consensus 167 r~rdGk~y~q~f~~G~~~~~~p-~-i--~~~~~~~tGT~V~F~PD~~iF~~-~~f~~d~l~~l~~RlrelA~Ln~Gl~I~ 241 (418)
T 1pvg_A 167 DLNVGQKYVQKWENNMSICHPP-K-I--TSYKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVY 241 (418)
T ss_dssp ETTTTEEEEEEEETTTTEECCC-E-E--EECCSSCCEEEEEEEECGGGGTC-SSCCHHHHHHHHHHHHHHHHHSTTCEEE
T ss_pred ECCCCcEEEEEEEcCCCccCCC-e-e--cccCCCCCceEEEEEEChHHcCC-cccCHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 59999999999996 5555 1 2 11223579999999999999975 5799998 689999999999999999
Q ss_pred EeecCCCCCcCcceeEeecccHHHHHHH----HhcCCC---------CCC-ceeEEEEeecCeEEEEEEEEcCCCCCcee
Q 005193 273 LRKEDSDPEKNQYNEYFFAGGLEEYVQW----LNTDKK---------PLH-DVVGFRKDVDGITIDLALQWCSDAYSDTM 338 (709)
Q Consensus 273 l~der~~~~~~~~e~f~~~~Gl~dyv~~----l~~~~~---------~l~-~~i~~~~~~~~~~veval~~s~~~~~~~~ 338 (709)
|+|+|.+ .+|+++||++ ++.+++ +++ ++++|.++.+ .||||+||+ +++ +++
T Consensus 242 l~der~~-----------~~g~~~~v~~y~~~l~~~k~~~~~~~~~~~~~~~~i~~~~~~~--~vevA~~~~-~~~-~~~ 306 (418)
T 1pvg_A 242 LNGKSLK-----------IRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINN--RWEVAFAVS-DIS-FQQ 306 (418)
T ss_dssp ETTEECC-----------CCSHHHHHHTTTTTC-----------------CCSCEEEEEET--TEEEEEEEC-SSS-CEE
T ss_pred Eeccccc-----------cccHHHHHHHHHHhhhcccccccccccccCCCCCCEEEEEecc--eEEEEEEEc-CCC-ceE
Confidence 9999853 1478888764 455555 566 6788877655 489999998 565 679
Q ss_pred eeeeCceecCCCccchHHHHHHHHHHHHHHHhhcccCCCCCCCCCHhhhccceEEEEEEeecCCCCCCccccccCCchhh
Q 005193 339 LGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVR 418 (709)
Q Consensus 339 ~SFVN~I~T~~GGTHv~g~~~altr~ln~~~kk~~~~K~k~~~l~~~dIregL~~vVsvki~nP~FegQTK~kL~n~ev~ 418 (709)
+||||||+|++||||++||+++|++++++|++++ ++.+++++||||||++||||+++||+|+||||+||+|++.+
T Consensus 307 ~SFvN~I~T~~GGTH~~g~~~al~~~i~~~~~k~-----~~~~l~g~Dvregl~aviSvkv~~PqFegQTK~kL~~~~~~ 381 (418)
T 1pvg_A 307 ISFVNSIATTMGGTHVNYITDQIVKKISEILKKK-----KKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTRVKD 381 (418)
T ss_dssp EEEETTEECTTCBHHHHHHHHHHHHHHHHHHCC----------CCHHHHHTTEEEEEEECCSSCCBSSTTCCSBCCCGGG
T ss_pred EEEeCceeCCCCCcHHHHHHHHHHHHHHHHHHhc-----ccCCCCHHHHhhCeEEEEEEecCCCcccCccchhhcCcccc
Confidence 9999999999999999999999999999998753 23579999999999999999999999999999999998775
Q ss_pred hhhhhhHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH
Q 005193 419 KVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAK 458 (709)
Q Consensus 419 ~~v~~~v~~~l~~~le~np~~~~~I~~k~~~~~kar~aak 458 (709)
.++++++.+.|..||++ +.|+++++.+++||+||+
T Consensus 382 ~v~~~~v~e~l~~~l~~-----~~iv~ki~~~a~ar~aa~ 416 (418)
T 1pvg_A 382 FGSRCEIPLEYINKIMK-----TDLATRMFEIADANEENA 416 (418)
T ss_dssp SSSCCCCCHHHHHHHTT-----SHHHHHHHHHHHC-----
T ss_pred cccccchhHHHHHHHhh-----hHHHHHHHHHHHHHHHhh
Confidence 44447999999999985 567777777878777664
No 6
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=100.00 E-value=3.1e-96 Score=743.98 Aligned_cols=237 Identities=50% Similarity=0.854 Sum_probs=212.2
Q ss_pred HHhhccccccCCCCCCCCCCCCCCCCCceEEEeecCCCCccccccCCCCceEeeccCcccccccccCHHHhhhcHhHHHH
Q 005193 463 LVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNL 542 (709)
Q Consensus 463 ~~r~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLRGKiLNv~ka~~~ki~~N~Ei~~l 542 (709)
..|||++++.+.|||||+||+++||++|||||||||||||||||||||+||||||||||||||++++.+||++|+||++|
T Consensus 21 ~~rrk~~~~~~~lpgKLaDc~~kd~~~~eLflvEGDSAgGsakqgRdr~~QailPLRGKiLNv~ka~~~ki~~N~Ei~~i 100 (268)
T 3k9f_C 21 DKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTM 100 (268)
T ss_dssp ---------------CCBCCSSCCTTSCEEEEEECHHHHHHHHHSSCTTTEEEEEECSSCCCTTSSCHHHHHTCHHHHHH
T ss_pred hhhhhhccccCCCCccccCcccCCCCceeEEEeeeecccccccccCccccccccccCCcchhhhcCCHHHHhhCHHHHHH
Confidence 35678888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccCCcCccccccceeEEEeecCCCCCchhhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCe----EEEe
Q 005193 543 IRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQ----VQYC 618 (709)
Q Consensus 543 i~alG~g~~~~~~~~~~LRYgkIiImTDaDvDG~HI~~Llltff~~~~p~Li~~G~i~~~~tPL~kv~~gk~----~~y~ 618 (709)
|+|||||+ +.+||+++||||||||||||||||+||++|||||||||||+||++||||+|+||||||++||+ +.||
T Consensus 101 i~alG~g~-g~~~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPLykv~~gk~~~~~~~Y~ 179 (268)
T 3k9f_C 101 IYTIGAGV-GADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYA 179 (268)
T ss_dssp HHHHCSCC---CCCCC-CCCSEEEEECCSSHHHHHHHHHHHHHHHHTSHHHHHTTCEEEECCCSEEEEC-CGGGCCEEEE
T ss_pred HHHhCCCC-CccccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhCCcEEEecCCeEEEEeCCCcccceEEE
Confidence 99999998 578999999999999999999999999999999999999999999999999999999999874 4799
Q ss_pred eCHHHHHHHHHhCCCCCcccceEeeccccCChhhhHhhhcCccceeeeeeccccHHHHHHHHHHhcCCCchHHHHHHHhc
Q 005193 619 YDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNA 698 (709)
Q Consensus 619 ys~~e~~~~~~~~~~~~~~~iqryKGLGem~~~q~~ett~dp~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~RK~~i~~~ 698 (709)
||++|+++|++++. ++|+||||||||||+|+|||||||||++|+|.||+++|+.+++++|++|||++|++||+||++|
T Consensus 180 y~e~E~~~~~~~~~--~~~~IqryKGLGEm~~~qlweTtmdP~~R~L~~Vti~da~~a~~~f~~LMG~~v~~Rk~fI~~~ 257 (268)
T 3k9f_C 180 WTDGELEELRKQFG--KGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDN 257 (268)
T ss_dssp CSHHHHHHHHHHSC--TTCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECSCSHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred eCHHHHHHHHHhcC--CCCCceEecCCCccCHHHHHHHhcCccceeEEEEEcCcHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 99999999999863 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 005193 699 ANLV 702 (709)
Q Consensus 699 ~~~~ 702 (709)
+..+
T Consensus 258 a~~~ 261 (268)
T 3k9f_C 258 VKFT 261 (268)
T ss_dssp CCCC
T ss_pred hHHh
Confidence 9865
No 7
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=1.4e-93 Score=784.82 Aligned_cols=376 Identities=42% Similarity=0.677 Sum_probs=350.1
Q ss_pred CCCcccceeccChhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHhhccCCCCeEEEEEecCCc---------cccccCC
Q 005193 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS---------IPIDLHP 146 (709)
Q Consensus 76 ~Y~~~~Iq~L~glE~VrkRPgMYIGst~~~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~Dgs---------IPvd~h~ 146 (709)
+|++++||+|+|+||||+||||||||++.+|++|+++|+|+||+||+++++|+.|.|+++.||+ ||++.|+
T Consensus 2 ~y~~~~i~~l~~le~vr~rpgmyiGs~~~~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~~~~i~V~DnG~GIp~~~~~ 81 (390)
T 1kij_A 2 SYDASAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDGSLTVEDNGRGIPVDLMP 81 (390)
T ss_dssp -----CCEECCTTHHHHHCTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEECSSCCCCSEET
T ss_pred CCCHHHCEEcchhHHHhcCCCcEEccCCcchHHHHHHHHHHHHHHHhhhCCCCEEEEEEEcCCEEEEEEcCCCCCHHHhh
Confidence 6999999999999999999999999999999999999999999999999999999999987554 9999999
Q ss_pred CCCccceEEEEeeeccCCCCCCCCCceeeccCcccccceeeeeecceeEEEEEeCCEEEEEEccCCCCCcceeeeccCCC
Q 005193 147 ATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVD 226 (709)
Q Consensus 147 ~~g~~~~E~v~t~LhaGgkFd~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~Gk~y~q~f~~G~~~~~l~~~~~~~~ 226 (709)
.+|+|++|+||+++|+|+||+++ .|++|||+||+|+++||++|++|+|+++|+|+.|.|+|++|+++.++..+ +
T Consensus 82 ~~~~~~~e~if~~~~~~~kf~~~--~~~~s~G~~G~Gls~v~als~~~~v~t~~~g~~~~~~~~~G~~~~~~~~~----~ 155 (390)
T 1kij_A 82 EEGKPAVEVIYNTLHSGGKFEQG--AYKVSGGLHGVGASVVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVV----G 155 (390)
T ss_dssp TTTEEHHHHHHHSSCEESGGGGS--SCCCCSCSSTTSHHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEE----E
T ss_pred hccccchhhheeeeeecccccCc--cccccCCCCCcceeeecccccceEEEEecCCcEEEEEEcCCcccccceee----c
Confidence 99999999999999999999877 89999999999999999999999999999999999999999987766544 2
Q ss_pred CC--CCCCeEEEEEcCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCcCcceeEeecccHHHHHHHHhcC
Q 005193 227 SK--DRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTD 304 (709)
Q Consensus 227 ~~--~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~LnpGL~I~l~der~~~~~~~~e~f~~~~Gl~dyv~~l~~~ 304 (709)
.. .++||+|+|+||+++|++ ..|+++.|.+||+++|+|||||+|+|+|++.+ ..+.|+|++||++||.+++.+
T Consensus 156 ~~~~~~~GT~V~f~Pd~~~F~~-~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~~~----~~~~f~~~~Gl~~~v~~l~~~ 230 (390)
T 1kij_A 156 EAPRGKTGTRVTFKPDPEIFGN-LRFDPSKIRARLREVAYLVAGLKLVFQDRQHG----KEEVFLDKGGVASFAKALAEG 230 (390)
T ss_dssp ECGGGCCEEEEEEEECHHHHTT-CCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGT----EEEEECCTTHHHHHHHHHTTT
T ss_pred cccCCCCCcEEEEEEChHHhCC-ccccHHHHHHHHHHhcCcCCCcEEEEEeCCCc----ceEEEEcCCcHHHHHHHHhCC
Confidence 22 579999999999999964 57999999999999999999999999999842 357899999999999999998
Q ss_pred CCCCC-ceeEEEEeecCeEEEEEEEEcCCCCCceeeeeeCceecCCCccchHHHHHHHHHHHHHHHhhcccCCCCCCCCC
Q 005193 305 KKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLS 383 (709)
Q Consensus 305 ~~~l~-~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~altr~ln~~~kk~~~~K~k~~~l~ 383 (709)
+++++ +++++.++.+++.||+|++|+ ++|.++++||||+|+|.+||||++||++||++++|+|+++.++.|+++.+++
T Consensus 231 ~~~~~~~~i~~~~~~~~i~ve~a~~~~-~~~~~~~~sFvN~i~t~~GGTH~~g~~~alt~~i~~~~~~~~l~k~~~~~l~ 309 (390)
T 1kij_A 231 EDLLYEKPFLIRGTHGEVEVEVGFLHT-QGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGPQPT 309 (390)
T ss_dssp SCBSCSSCEEEEEEETTEEEEEEEEEB-SSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCCCSSSCCCC
T ss_pred CCcCCCCcEEEEeecCCeEEEEEEEec-CCCCceEEEEEcCeeeCCCCchhHHHHHHHHHHHHHHHHHhCccccccCCcC
Confidence 88887 678888888999999999998 7888999999999999999999999999999999999999998888888999
Q ss_pred HhhhccceEEEEEEeecCCCCCCccccccCCchhhhhhhhhHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005193 384 GEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 463 (709)
Q Consensus 384 ~~dIregL~~vVsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~le~np~~~~~I~~k~~~~~kar~aakkare~ 463 (709)
++||||||++||||+++||+|+||||+||+|++++.+|+++|.+.|..||++||++++.|++|++.+++||+|||||||+
T Consensus 310 ~~dvregl~avisvki~~P~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~~aR~aa~kare~ 389 (390)
T 1kij_A 310 GDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQAREAARKAREL 389 (390)
T ss_dssp TTTTTTTEEEEEEEECSSCCBCSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcEEEEEeecCCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
No 8
>3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli}
Probab=100.00 E-value=3.5e-94 Score=768.99 Aligned_cols=249 Identities=51% Similarity=0.871 Sum_probs=181.5
Q ss_pred HHHHHHhhccccccCCCCCCCCCCCCCCCCCceEEEeecCCCCccccccCCCCceEeeccCcccccccccCHHHhhhcHh
Q 005193 459 RARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEE 538 (709)
Q Consensus 459 kare~~r~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLRGKiLNv~ka~~~ki~~N~E 538 (709)
+||+++|||+.+....|||||+||+++||++|||||||||||||||||||||+||||||||||||||++++.+||++|+|
T Consensus 3 ~are~~rrk~~~~~~~lpgKLaDc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~~ki~~n~E 82 (420)
T 3nuh_B 3 AAREMTRRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQE 82 (420)
T ss_dssp ---------------CCBTTBBCCSCCSTTSCEEEEEEHHHHHHHHHHHSCTTTEEEEEECC-------------CCCHH
T ss_pred HHHHHHHhhcccccCCCCccccccccCCccceeEEEEeccccccccccccccccccccccCCcchhHhhccHHHHhcCHH
Confidence 57889999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccCCcCccccccceeEEEeecCCCCCchhhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCeEEEe
Q 005193 539 IQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYC 618 (709)
Q Consensus 539 i~~li~alG~g~~~~~~~~~~LRYgkIiImTDaDvDG~HI~~Llltff~~~~p~Li~~G~i~~~~tPL~kv~~gk~~~y~ 618 (709)
|++||+|||||++.++||+++||||||||||||||||+||++|||||||||||+||++||||+|+||||||++||++.||
T Consensus 83 i~~ii~alG~~~g~~~~~~~~LRY~kIiIMTDaDvDGsHIr~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~y~ 162 (420)
T 3nuh_B 83 VATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYI 162 (420)
T ss_dssp HHHHHHHHC-------------CCSEEEECCCSSTTTTHHHHHHHHHHHHHCHHHHHTTCEEEECCCSEEEEETTEEEEE
T ss_pred HHHHHHHhCCCCCcCCCChhhcCcCeEEEecCCCCCcccchhHHHHHHHHHhHHHHHCCcEEEecCceEEEEcCCeEEEe
Confidence 99999999999966789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHHHHhCC------------------------------------------------------------------
Q 005193 619 YDDAELKKVKSSFP------------------------------------------------------------------ 632 (709)
Q Consensus 619 ys~~e~~~~~~~~~------------------------------------------------------------------ 632 (709)
||++|+++|+.+..
T Consensus 163 ~~~~e~~~~~~~~al~~~~l~~~~~~~~~~g~~L~~l~~~~~~~~~~i~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 242 (420)
T 3nuh_B 163 KDDEAMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQTV 242 (420)
T ss_dssp CCHHHHHHHHHHHHHTTEEEEESSSCSEEEHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHSCCCCHHHHHCHHHH
T ss_pred CCHHHHHHHHhhccccCeEEEeCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHhcccCChhhhcCHHHH
Confidence 99999999976400
Q ss_pred --------------------------------------------------------------------------------
Q 005193 633 -------------------------------------------------------------------------------- 632 (709)
Q Consensus 633 -------------------------------------------------------------------------------- 632 (709)
T Consensus 243 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~g~~~~~~l~~~~~~s~ey~~l~~~~~~l~~~~~~~~~ 322 (420)
T 3nuh_B 243 TRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGLLEEDAF 322 (420)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEEECC---CEEEEEEEECSSSEEEEECCHHHHHSHHHHHHHHHHHHHHHTTTTSEE
T ss_pred HHHHHHHHHHhhhccccccceEEEEeecccCcceeEEEEEEecCcceEEEEChHHhcCHHHHHHHHHHHHHHHhhcCCcE
Confidence
Q ss_pred -----------------------CCCcccceEeeccccCChhhhHhhhcCccceeeeeeccccHHHHHHHHHHhcCCCch
Q 005193 633 -----------------------SNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVD 689 (709)
Q Consensus 633 -----------------------~~~~~~iqryKGLGem~~~q~~ett~dp~~r~l~~v~~~d~~~~~~~f~~lmg~~~~ 689 (709)
+.++..||||||||||||+|||||||||++|+|.||+++|+.+|+++|+.|||+.||
T Consensus 323 i~~~~~~~~v~~~~~~~~~l~~~~~kG~~IQRYKGLGEMNpeQLWETTMdP~~R~LLqV~IeDa~~AD~iFt~LMGD~VE 402 (420)
T 3nuh_B 323 IERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVE 402 (420)
T ss_dssp EEESSCEEEESSHHHHHHHHHHHHTTTCEEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHCSCC--
T ss_pred EEeCCcceecCCHHHHHHHHHHHhhccceeeeeccCCCCChhhhhhcccCcccceEEEEEehhHHHHHHHHHHhcCCCch
Confidence 124577999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCcCCCCC
Q 005193 690 TRKELIQNAANLVNLDHLDI 709 (709)
Q Consensus 690 ~RK~~i~~~~~~~~~~~ld~ 709 (709)
|||+||++||.. +.||||
T Consensus 403 PRR~FIe~NAL~--V~nLDi 420 (420)
T 3nuh_B 403 PRRAFIEENALK--AANIDI 420 (420)
T ss_dssp --------------------
T ss_pred HhHHHHHhhhcc--cccCCC
Confidence 999999999985 678997
No 9
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=100.00 E-value=3e-93 Score=781.52 Aligned_cols=352 Identities=21% Similarity=0.265 Sum_probs=298.6
Q ss_pred cccceeccChhhHhhCCCeeeccCC----------------------CCchhHHHHHHHHhhHHhhc-cCCCCeEEEEEe
Q 005193 79 SEQIQVLEGLEAVRKRPAMYIGSTG----------------------PRGLHHLVYEILDNAVDEAQ-AGYASNIEVALL 135 (709)
Q Consensus 79 ~~~Iq~L~glE~VrkRPgMYIGst~----------------------~~GL~hlv~EIldNavDe~~-~g~~~~I~V~i~ 135 (709)
+++||+|+|||||||||||||||++ .+|||||||||||||+||++ +|+|+.|.|+|+
T Consensus 3 ~~~~~~L~glE~VrkRPgmYiGst~~~~~~~~v~~~~~~~~~~~~~~~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~ 82 (400)
T 1zxm_A 3 ERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTID 82 (400)
T ss_dssp HHHSEECCHHHHHHHCCHHHHCCCSCEEEEEEEEETTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE
T ss_pred hHhheecchHHHHHhCCCcEEccCCccccceeeeccccccccccccccchHHHHHHHHHhhHHhHHhhcCCCceEEEEEE
Confidence 3579999999999999999999999 68999999999999999995 699999999999
Q ss_pred cC-Cc---------cccccCCCCCccceEEEEeeeccCCCCCCCCCceeeccCcccccceeeeeecceeEEEEEe--CCE
Q 005193 136 AD-NS---------IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWR--DGM 203 (709)
Q Consensus 136 ~D-gs---------IPvd~h~~~g~~~~E~v~t~LhaGgkFd~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r--~Gk 203 (709)
.| |+ ||++.||++|+|++|+|||+|||||||+++ .|++|||+||||+|+|||||++|+|+|+| +|+
T Consensus 83 ~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~--~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~ 160 (400)
T 1zxm_A 83 PENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDD--EKKVTGGRNGYGAKLCNIFSTKFTVETASREYKK 160 (400)
T ss_dssp TTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGG--GCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTE
T ss_pred CCCCEEEEEECCCcccCccccccCccchhheeeeecccCCCCCC--cccccCCccccceeeeEEeccceEEEEecCCCCc
Confidence 86 55 999999999999999999999999999987 99999999999999999999999999998 599
Q ss_pred EEEEEccCCCCCcceeeeccCCCCCCCCCeEEEEEcCcccccccccCCHHH---HHHHHHHHhhcCCCcEEEEeecCCCC
Q 005193 204 EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNT---IAGRIRELAFLNPKLTIALRKEDSDP 280 (709)
Q Consensus 204 ~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~fd~~~---l~~Rl~elA~LnpGL~I~l~der~~~ 280 (709)
.|+|+|++|+++.+++.+. ....++||+|+|+||+++|++ ..|++++ |.+|++++|||||||+|.|+|+|.+
T Consensus 161 ~~~~~~~~G~~~~~~~~ig---~~~~~~GT~V~F~Pd~~iF~~-~ef~~~~~~~l~~rlrelA~lnpgv~i~l~der~~- 235 (400)
T 1zxm_A 161 MFKQTWMDNMGRAGEMELK---PFNGEDYTCITFQPDLSKFKM-QSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNKLP- 235 (400)
T ss_dssp EEEEEEETTTTEECCCEEE---ECCSCCEEEEEEEECGGGGTC-SSCCHHHHHHHHHHHHHHHHHSSSCEEEETTEECC-
T ss_pred EEEEEEccCccccCcceec---cCCCCCccEEEEEEChHHhCc-eeecHHHHHHHHHHHHHHHhhCCCcEEEEecCCCC-
Confidence 9999999999887764441 123468999999999999964 5799999 7899999999999999999999842
Q ss_pred CcCcceeEeecccHHHHHHHHhcCCCCCCc-eeEEEEeecCeEEEEEEEEcCCCCCceeeeeeCceecCCCccchHHHHH
Q 005193 281 EKNQYNEYFFAGGLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 359 (709)
Q Consensus 281 ~~~~~e~f~~~~Gl~dyv~~l~~~~~~l~~-~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~ 359 (709)
++||++||++++.+++++++ ++.+..+.+++.||||+||++++|+ ++||||||+|++||||++||++
T Consensus 236 ----------~~Gi~~yv~~l~~~~~~~~~~~~~~~~~~~~~~~eva~~~~~~~~~--~~sfvN~I~T~~GGTH~~gfr~ 303 (400)
T 1zxm_A 236 ----------VKGFRSYVDMYLKDKLDETGNSLKVIHEQVNHRWEVCLTMSEKGFQ--QISFVNSIATSKGGRHVDYVAD 303 (400)
T ss_dssp ----------CCSHHHHHHHHHTTCBCSSSSBCCCEEEEEETTEEEEEEECSSSCE--EEEEETTEECTTEEHHHHHHHH
T ss_pred ----------CCCHHHHHHHHhcCCCccCCCCcceEEeecCcEEEEEEEEcCCCce--EEEEeCCccCCCCCcHHHHHHH
Confidence 38999999999998877763 3333334556779999999855773 7999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCHhhhccceEEEEEEeecCCCCCCccccccCCchhhhhhhh-hHHHHHHHHHhhChH
Q 005193 360 SLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQ-SVQEYLTEYLELHPD 438 (709)
Q Consensus 360 altr~ln~~~kk~~~~K~k~~~l~~~dIregL~~vVsvki~nP~FegQTK~kL~n~ev~~~v~~-~v~~~l~~~le~np~ 438 (709)
||+++||+|+++++ +++.+++++||||||++||||+++||+|+||||+||+|+++ .+++. ++.+.|..|| .||.
T Consensus 304 altr~i~~y~~k~~---k~~~~l~~~Dvregl~avisvkv~~PqFegQTK~kL~~~~~-~~v~~~~~~~~~~~~l-~~~~ 378 (400)
T 1zxm_A 304 QIVTKLVDVVKKKN---KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPK-SFGSTCQLSEKFIKAA-IGCG 378 (400)
T ss_dssp HHHHHHHHHHTTCC-------CCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCCGG-GSSSCCCCCHHHHHHH-TTC-
T ss_pred HHHHHHHHHHHHhc---ccCCCcCHHHHhhCeEEEEEEecCCCCcCcccchhhcCccc-ccccccchhHHHHHHH-cChH
Confidence 99999999998752 34568999999999999999999999999999999999987 78887 8999999999 8999
Q ss_pred HHHHHHHHHHHHHHHH
Q 005193 439 VLDSILSKSLSALKAA 454 (709)
Q Consensus 439 ~~~~I~~k~~~~~kar 454 (709)
+++.|+++++.+++++
T Consensus 379 ~~~~i~~~a~~~~~~~ 394 (400)
T 1zxm_A 379 IVESILNWVKFKAQVQ 394 (400)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998766543
No 10
>3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A*
Probab=100.00 E-value=6.2e-92 Score=705.78 Aligned_cols=228 Identities=47% Similarity=0.818 Sum_probs=176.7
Q ss_pred CCCCCCCCCCCceEEEeecCCCCccccccCCCCceEeeccCcccccccccCHHHhhhcHhHHHHHHHhcCCccCCcCccc
Q 005193 479 LADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKE 558 (709)
Q Consensus 479 L~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLRGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~~~~~~~~~ 558 (709)
..|-.++||++|||||||||||||||||||||+||||||||||||||++++.+||++|+||++||+|||||+ +++||++
T Consensus 9 ~~~~~~~d~~~~eLflvEGDSAgGsak~gRdr~~QailPLRGKiLNv~ka~~~ki~~N~Ei~~ii~alG~~~-g~~~d~~ 87 (242)
T 3m4i_A 9 VDDDDKTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGI-HDEFDIG 87 (242)
T ss_dssp ------CCGGGEEEEEEESSSCC---------CEEEEEEECC--------CHHHHTTCHHHHHHHHHHCSCS-GGGCCGG
T ss_pred CCCccccChhheEEEEEecccccchhhhccccccccccccCCcchhhhhcCHHHHhhCHHHHHHHHHhCCCc-Ccccccc
Confidence 345568999999999999999999999999999999999999999999999999999999999999999998 5779999
Q ss_pred cccceeEEEeecCCCCCchhhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCC-eEEEeeCHHHHHHHHHhCCC-CCc
Q 005193 559 ALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGK-QVQYCYDDAELKKVKSSFPS-NAL 636 (709)
Q Consensus 559 ~LRYgkIiImTDaDvDG~HI~~Llltff~~~~p~Li~~G~i~~~~tPL~kv~~gk-~~~y~ys~~e~~~~~~~~~~-~~~ 636 (709)
+||||||||||||||||+||++|||||||||||+||++||||+|+||||||++|| ++.||||++|+++|++++.. +++
T Consensus 88 ~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~~y~ys~~E~~~~~~~~~~~~~~ 167 (242)
T 3m4i_A 88 KLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKK 167 (242)
T ss_dssp GCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCTHHHHTTCEEEECCCSEEECCTTSCCEEESSHHHHHHHHHHHHHHTCC
T ss_pred ccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhcCcEEEecCceEEEEeCCccEEEeCCHHHHHHHHHHhhhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999 89999999999999987531 233
Q ss_pred c----cceEeeccccCChhhhHhhhcCccceeeeeeccccHHHHHHHHHHhcCCCchHHHHHHHhccccCCcCCCCC
Q 005193 637 Y----SIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLVNLDHLDI 709 (709)
Q Consensus 637 ~----~iqryKGLGem~~~q~~ett~dp~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~RK~~i~~~~~~~~~~~ld~ 709 (709)
| +||||||||||+|+|||||||||++|+|.||+++|+.+++++|++|||+++++||+||++|+.. +.+|||
T Consensus 168 ~~k~~~IqryKGLGEm~~~ql~ettmdp~~R~L~~V~i~d~~~a~~~f~~LMG~~v~~Rk~~I~~~~~~--~~~ld~ 242 (242)
T 3m4i_A 168 INKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKD--VRFLDV 242 (242)
T ss_dssp CCTTTSEEECSCGGGSCHHHHHHHHTCTTTCCEEECCHHHHHHHHHHHHHHHHC-----------------------
T ss_pred cccccccceEcCcCCCCHHHHHHHhcCccceeeEEeccCcHHHHHHHHHHHhCCCcHHHHHHHHHHhhh--hhhccC
Confidence 5 9999999999999999999999999999999999999999999999999999999999999985 567875
No 11
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=100.00 E-value=1.8e-86 Score=763.40 Aligned_cols=255 Identities=43% Similarity=0.698 Sum_probs=225.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCCCCceEEEeecCCCCccccccCCCCceEeeccCcccc
Q 005193 444 LSKSLSALKAALAAKRARDLVRQKSVLRSSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKIL 523 (709)
Q Consensus 444 ~~k~~~~~kar~aakkare~~r~k~~~~~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLRGKiL 523 (709)
+++++.+++||++++++ .+||+.+....|||||+||+++||++|||||||||||||||||||||+||||||||||||
T Consensus 1 ~~k~~~~~~ar~~~~~~---~~rk~~~~~~~lpgKL~dc~~~~~~~~eL~lvEGDSAgGsak~gRdr~~qailPLRGKiL 77 (767)
T 2xkj_E 1 MEMAISKAGRRLKAAKK---VERKKIVSGPALPGKLADCVGQTREESELFIVEGDSAGGSAKQARDKNFQAIMPIRGKIL 77 (767)
T ss_dssp ---------------------CCCCCSSSCSSTTTCBCCCC-CGGGCEEEEEEHHHHHHHHHHHSCTTTEEEEEESSCCC
T ss_pred ChHHHHHHHHHHHHHHH---hhhccccccccCcHhhHhcccCCCcceEEEEeeCCCCcchhhhcCCcccccccccccchh
Confidence 35778888888855443 346788888899999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHHhhhcHhHHHHHHHhcCCccCCcCccccccceeEEEeecCCCCCchhhhhHHHHHHHHHHHhhhcCcEEEec
Q 005193 524 NVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGV 603 (709)
Q Consensus 524 Nv~ka~~~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRYgkIiImTDaDvDG~HI~~Llltff~~~~p~Li~~G~i~~~~ 603 (709)
|||+|+.+||++|+||++|++|||||++ . .|+++||||||||||||||||+||+||||||||||||+||++||||+|+
T Consensus 78 Nv~ka~~~ki~~n~Ei~~i~~alG~~~g-~-~~~~~lRY~kiiImtDaDvDG~HI~~Llltff~r~~p~Li~~G~vy~a~ 155 (767)
T 2xkj_E 78 NTWEVSSDEVLASQEVHDIAIAIGVDPG-S-DDLSELRYGKICILADADSDGLHIATLLCALFVKHFPALVEEGHLYVAM 155 (767)
T ss_dssp CCTTSCTTTGGGSHHHHHHHHHHTCCTT-C-CCCTTCCCSEEEEECCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEEEC
T ss_pred hhhcCCHHHHhccHHHHHHHHHhCCCcc-c-ccccccccceEEEeecCCCCcchhhHHHHHHHHHHhHHHHhcCcEEEec
Confidence 9999999999999999999999999985 3 3999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCeEEEeeCHHHHHHHHHhCCCCCcccceEeeccccCChhhhHhhhcCccceeeeeeccccHHHHHHHHHHh
Q 005193 604 PPLYKVERGKQVQYCYDDAELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSL 683 (709)
Q Consensus 604 tPL~kv~~gk~~~y~ys~~e~~~~~~~~~~~~~~~iqryKGLGem~~~q~~ett~dp~~r~l~~v~~~d~~~~~~~f~~l 683 (709)
||||||++||++.||||++|+++|++++++.++|+||||||||||||+|+|||||||++|+|.+|+++|+..++++|++|
T Consensus 156 pPl~kv~~gk~~~y~~~~~e~~~~~~~~~~~~~~~IqRYKGLGEmnp~ql~ETtmdp~~R~L~~v~i~da~~ad~~f~~l 235 (767)
T 2xkj_E 156 PPLFRIDIGKDVHYALDDEELETILKNVKGNKNPQITRFKGLGEMNAIQLRETTMDPNTRRLVQLDLDDAHLTAGLLDKL 235 (767)
T ss_dssp CCSEEEEETTEEEEESSHHHHHHHHHTCCSSCCCEEEECCCGGGSCHHHHHHHHTCTTTCCEEEEECCSHHHHHHHHHHH
T ss_pred CCEEEEEECCEEEeeeCHHHHHHHHHHhhcCCCCceecccCCCCCCHHHHhHhhcCccceEEEEEEcccHHHHHHHHHHH
Confidence 99999999999999999999999999986556799999999999999999999999999999999999999999999999
Q ss_pred cCC-CchHHHHHHHhccccCC
Q 005193 684 MGA-RVDTRKELIQNAANLVN 703 (709)
Q Consensus 684 mg~-~~~~RK~~i~~~~~~~~ 703 (709)
||+ ++++||+||++++..++
T Consensus 236 mgkk~ve~RKewI~~~~~~~~ 256 (767)
T 2xkj_E 236 LAKKRAADRKQWLEQKGNLAD 256 (767)
T ss_dssp HCGGGHHHHHHHHHHHGGGCC
T ss_pred hCCCCchHHHHHHHhcCcccc
Confidence 998 69999999999987543
No 12
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=100.00 E-value=8.6e-85 Score=709.32 Aligned_cols=343 Identities=31% Similarity=0.531 Sum_probs=308.7
Q ss_pred ccChhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHhhccCCCCeEEEEEecCCccccccCCCCCccceEEEEeeeccCC
Q 005193 85 LEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSIPIDLHPATNKSALETVLTVLHAGG 164 (709)
Q Consensus 85 L~glE~VrkRPgMYIGst~~~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~DgsIPvd~h~~~g~~~~E~v~t~LhaGg 164 (709)
++.|||||||||||||||+.+||+|+|+||||||+||+++|+|+.|.|+|++||+|-|... ..|+++ |++| +||||+
T Consensus 9 ~~~lE~vrkRPgmYiGs~~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g~I~V~Dn-GrGIp~-e~v~-~lhags 85 (369)
T 3cwv_A 9 GGIVENVRKRPGMYCGDVGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCT-SRTVTA-ENLV-RVATGA 85 (369)
T ss_dssp CCHHHHHHHSTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEEE-ESSCCH-HHHH-HHHTTT
T ss_pred ccHhHHHHhCCceEEcCCCCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCCEEEEEEC-CCCcCH-hHee-eeecCC
Confidence 4559999999999999999999999999999999999999999999999999998666532 456666 9999 999999
Q ss_pred CCCCCC--CceeeccCcccccceeeeeecceeEEEEEeCCEEEEEEccCCCC------CcceeeeccCCCCCCCCCeEEE
Q 005193 165 KFGGSS--SGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKP------VTTLTCHVLPVDSKDRQGTRIR 236 (709)
Q Consensus 165 kFd~~~--~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~Gk~y~q~f~~G~~------~~~l~~~~~~~~~~~~~GT~V~ 236 (709)
||++.+ +.|++|| |+|+|||||++|+|+++|+|+.|+|+|++|++ +.++..+ +...++||+|+
T Consensus 86 Kf~~~~~~~~y~vsG-----Gls~vnalSs~l~v~t~r~g~~~~~~~~~G~~~~~~~~~~~l~~~----g~~~~~GT~V~ 156 (369)
T 3cwv_A 86 GFLGRPPGDGWGWDS-----MLVVSLALSSRYQVDIWADGRQWRVMGEHGHPQGEGAAVTPMEPM----PVSAERGVRVH 156 (369)
T ss_dssp TGGGSSCCCSTTTTS-----SHHHHHHTEEEEEEEEEETTEEEEEEEETTEECTTCEEESSCCCC----SSCCSEEEEEE
T ss_pred CcCCCcccccccccC-----HHHHHHHhhceEEEEEEECCCEEEEEEeCCcccccccccCCceEe----cccCCCCCEEE
Confidence 999822 3899995 79999999999999999999999999999998 6665433 33457999999
Q ss_pred EEcCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCcCcceeEeecccHHHHHHHHhcCCCCCC-ceeEEE
Q 005193 237 FWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLH-DVVGFR 315 (709)
Q Consensus 237 F~PD~~iF~~~~~fd~~~l~~Rl~elA~LnpGL~I~l~der~~~~~~~~e~f~~~~Gl~dyv~~l~~~~~~l~-~~i~~~ 315 (709)
|+||+++|+ +..++++.|.+|++++|+|||||+|+|+|++.+ ..+.|+|++||++||.+++.++++++ +++++.
T Consensus 157 f~Pd~~~F~-~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~----~~~~f~~~gGl~~~v~~l~~~~~~~~~~~i~~~ 231 (369)
T 3cwv_A 157 FVPDATIFE-VLAFDRARLSRRCNELAALAPGLRVSFADLQRG----ERTLWHLPGGVAQWAHVLTEARPQLHPEPVVFD 231 (369)
T ss_dssp EEECTTTCS-CCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTT----EEEEEECTTHHHHHHHHHHTTSCBSSSSCEEEE
T ss_pred EEECHHHhC-CccccHHHHHHHHHHHcCcCCCcEEEEEeCCCC----eeEEEEeCchHHHHHHHHhcCCcccCCCcEEEE
Confidence 999999996 457999999999999999999999999999853 35789999999999999999888887 678889
Q ss_pred EeecCeEEEEEEEEcCCCCCceeeeeeCceecCCCccchHHHHHHHHHHHHHHHhhcccCCCCCCCCCHhhhccceEEEE
Q 005193 316 KDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCII 395 (709)
Q Consensus 316 ~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~altr~ln~~~kk~~~~K~k~~~l~~~dIregL~~vV 395 (709)
++.+++.||+|++|+ ++|++.++||||+|+|.+||||++||++||++++|+|++ +++.+++++||||||++||
T Consensus 232 ~~~~~i~ve~a~~~~-~~~~~~~~sFVN~i~t~~GGTH~~g~~~al~~a~~~~~k------~~~~~l~~~dvregl~avi 304 (369)
T 3cwv_A 232 FTWDGLRVQCALQWC-EDEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSG------ETRGAFPWARVAQGLTAIV 304 (369)
T ss_dssp EEETTEEEEEEEEEB-SSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHT------CCGGGSCHHHHTTTEEEEE
T ss_pred EecCCEEEEEEEEec-CCCCeeEEEEECCEEeCCCCCHHHHHHHHHHHHHHHHHh------hcCCCcCHHHHhhccEEEE
Confidence 888899999999998 789899999999999999999999999999999999992 2345799999999999999
Q ss_pred EEeecCCC--CCCccccccCCchhhhhhhhhHHHHHHHHHhhChHHHHHHHHHHHHHH
Q 005193 396 SVRVPNPE--FEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSAL 451 (709)
Q Consensus 396 svki~nP~--FegQTK~kL~n~ev~~~v~~~v~~~l~~~le~np~~~~~I~~k~~~~~ 451 (709)
||+++||+ |+||||+||+|++++.+|++++.+.|..||++||++++.|++|++.++
T Consensus 305 svk~~~P~~~FegQTK~kL~~~e~~~~v~~~v~~~l~~~l~~np~~a~~i~~k~~~~~ 362 (369)
T 3cwv_A 305 AVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLREHPVTPALLARRTSGSE 362 (369)
T ss_dssp EEECCGGGCCBSSTTCCSBCCTTHHHHHHHHHHHHHHHHHHTCTTHHHHHTTC-----
T ss_pred EeccCCcchhccccccchhcCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence 99999999 999999999999999999999999999999999999999999998765
No 13
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=100.00 E-value=1.9e-76 Score=673.40 Aligned_cols=229 Identities=28% Similarity=0.453 Sum_probs=212.3
Q ss_pred CCCCCCCCCCC---CCCCCCceEEEeecCCCCccccccCC---CCceEeeccCcccccccccCHHHhhhcHhHHHHHHHh
Q 005193 473 SSLPGKLADCS---STTPEESEIFIVEGDSAGGSAKQGRD---RRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRAL 546 (709)
Q Consensus 473 ~~lpgKL~Dc~---~~~~~~~eL~lvEGDSA~Gsak~gRd---r~~qailPLRGKiLNv~ka~~~ki~~N~Ei~~li~al 546 (709)
.++| ||+||+ ++||++|||||||||||||||+|||+ |+||||||||||||||++++.++|++|+||++|++||
T Consensus 4 ~g~~-KL~Dc~~a~~k~~~~~el~lvEGDSAggsak~gr~~~gR~~qailPLrGKiLNv~ka~~~ki~~n~Ei~~i~~al 82 (757)
T 3l4j_A 4 TNYP-KLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIM 82 (757)
T ss_dssp CSCS-SCBCCTTSSSTTTTTCEEEEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHHT
T ss_pred CCCc-CccccccccCCCccceEEEEeecccchhhHhhcccccCcccccccccCCcccchhhccHHHhhcCHHHHHHHHHh
Confidence 3577 999996 79999999999999999999999884 8899999999999999999999999999999999999
Q ss_pred cCCccCCcCccccccceeEEEeecCCCCCchhhhhHHHHHHHHHHHhhh-cCcEEEecCCeEEEE---eCCeEEEeeCHH
Q 005193 547 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFD-EGCIYVGVPPLYKVE---RGKQVQYCYDDA 622 (709)
Q Consensus 547 G~g~~~~~~~~~~LRYgkIiImTDaDvDG~HI~~Llltff~~~~p~Li~-~G~i~~~~tPL~kv~---~gk~~~y~ys~~ 622 (709)
|||++.++||+++||||||||||||||||+||++|||||||||||+||+ +||||+|+||||||+ +||+++|||+++
T Consensus 83 G~~~g~~~~~~~~lRY~kiiImtDaD~DG~HI~~Llltff~r~~p~Li~~~G~vy~~~~Pl~kv~~~~~gk~~~~~ys~~ 162 (757)
T 3l4j_A 83 GLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMP 162 (757)
T ss_dssp TCCCSSCCCCGGGSSCSEEEEECCSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESSHH
T ss_pred CCCcCcccccccccCcceEEEecCcccccccchhHHHHHHHHHhHHHhccCCEEEEecCceEEEeeccCCcceEEecCHH
Confidence 9999655579999999999999999999999999999999999999999 899999999999999 799999999999
Q ss_pred HHHHHHHhCCCCCcccceEeeccccCChhhhHhhh--cCccceeeeeeccccHHHHHHHHHHhcCCCchHHHHHHHhccc
Q 005193 623 ELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETT--LNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAAN 700 (709)
Q Consensus 623 e~~~~~~~~~~~~~~~iqryKGLGem~~~q~~ett--~dp~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~RK~~i~~~~~ 700 (709)
|+++|+++++..++|+||||||||||+|+|+|||| |||++|.|.+++++|+..++++|+. +++++||+||++|++
T Consensus 163 E~~~~~~~~~~~~~~~iqryKGLGem~~~ql~e~f~~m~~~~r~l~~~~~~d~~~~d~~f~~---~~~~~Rk~wi~~~~~ 239 (757)
T 3l4j_A 163 DYEKWREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKDYIDLAFSK---KKADDRKEWLRQYEP 239 (757)
T ss_dssp HHHHHHHHTGGGSCEEEEECCTTTTSCHHHHHHHHHTCTTTEEEECCCCTTHHHHHHHHHCT---TCHHHHHHHHHHCCT
T ss_pred HHHHHHHHhccCCCCccceecCcCcCCHHHHHHHhcCcCceeEEEEecCccHHHHHHHHhCc---CcchHHHHHHHhcCC
Confidence 99999998765567999999999999999999975 6699999999999998877777763 689999999999998
Q ss_pred cCCcC
Q 005193 701 LVNLD 705 (709)
Q Consensus 701 ~~~~~ 705 (709)
..+++
T Consensus 240 ~~~ld 244 (757)
T 3l4j_A 240 GTVLD 244 (757)
T ss_dssp TCCCC
T ss_pred ccccc
Confidence 76654
No 14
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=100.00 E-value=7.8e-76 Score=668.88 Aligned_cols=221 Identities=34% Similarity=0.531 Sum_probs=157.7
Q ss_pred CCCCCCCCCC---CCCCCCCceEEEeecCCCC-----ccccccCCCCceEeeccCcccccccccCHHHhhhcHhHHHHHH
Q 005193 473 SSLPGKLADC---SSTTPEESEIFIVEGDSAG-----GSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIR 544 (709)
Q Consensus 473 ~~lpgKL~Dc---~~~~~~~~eL~lvEGDSA~-----Gsak~gRdr~~qailPLRGKiLNv~ka~~~ki~~N~Ei~~li~ 544 (709)
.+|| ||+|| +++||++|||||||||||| ||||||||| |||||||||||||++++.+||++|+||++||+
T Consensus 34 ~~lp-KL~Dan~a~~kd~~~~eLflvEGDSAg~~a~sGsak~gRdr--~ailPLRGKiLNv~ka~~~ki~~N~Ei~~ii~ 110 (803)
T 3qx3_A 34 KGIP-KLDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIMENAEINNIIK 110 (803)
T ss_dssp CCCT-TCBCCTTTTSTTGGGCEEEEEEHHHHHHHHHTTSTTGGGTT--EEEEEECSSCCCCTTCCHHHHHHCHHHHHHHH
T ss_pred CCCC-ccccccccccCChhheEEEEecCCcchhhhhcccceecccc--cccccccCcchhhhhccHHHHhcCHHHHHHHH
Confidence 4678 99999 5799999999999999999 999999999 89999999999999999999999999999999
Q ss_pred HhcCCccCC---cCccccccceeEEEeecCCCCCchhhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCeEEEeeCH
Q 005193 545 ALGLGVKGE---DFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDD 621 (709)
Q Consensus 545 alG~g~~~~---~~~~~~LRYgkIiImTDaDvDG~HI~~Llltff~~~~p~Li~~G~i~~~~tPL~kv~~gk~~~y~ys~ 621 (709)
|||||++.+ .+|+++||||||||||||||||+||++|||||||||||+||+.||||+|+||||||++||++.|||++
T Consensus 111 alG~g~g~~~~~~~d~~~LRY~kIiIMTDADvDGsHI~~LLltff~r~~p~Li~~G~vyia~pPL~kv~~gk~~~~~ys~ 190 (803)
T 3qx3_A 111 IVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITPIVKASKNKQELSFYSI 190 (803)
T ss_dssp HHTCCTTCCCCSTTGGGGCSCSEEEEECCSSHHHHHHHHHHHHHHHHHCGGGGGTTCEEEECC-----------------
T ss_pred HhCCCcCccccccccccccccceEEEecCCCcccccchhHHHHHHHHHhHHHHhcCeEEEecCceEEEecCCeeEEEecH
Confidence 999999543 25899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCcccceEeeccccCChhhhHhhhcCcc-ceeeeeecc-ccHHHHHHHHHHhcCCCchHHHHHHHhcc
Q 005193 622 AELKKVKSSFPSNALYSIQRFKGLGEMMPVQLWETTLNPE-QRMLKQLVI-EDAAEANVVFSSLMGARVDTRKELIQNAA 699 (709)
Q Consensus 622 ~e~~~~~~~~~~~~~~~iqryKGLGem~~~q~~ett~dp~-~r~l~~v~~-~d~~~~~~~f~~lmg~~~~~RK~~i~~~~ 699 (709)
+|+++|++++...++|+||||||||||+|+|+|||||||. +|.+.+++. +|...++++|+ |+++++||+||++++
T Consensus 191 ~e~~~~~~~~~~~~~~~iqryKGLGem~~~el~ettmd~~~~r~~~~~~~~~d~~~~d~~F~---k~~~~~RK~wi~~~~ 267 (803)
T 3qx3_A 191 PEFDEWKKHIENQKAWKIKYYKGLGTSTAKEAKEYFADMERHRILFRYAGPEDDAAITLAFS---KKKIDDRKEWLTNFM 267 (803)
T ss_dssp -----------------------------CHHHHHHHTHHHHEEEEECCSHHHHHHHHHHHC---GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcccccccccCCCCHHHHHHHhcCcccceEEEEeCCcchHHHHHHHhc---CCChHHHHHHHHHhh
Confidence 9999999887655679999999999999999999999986 566666652 44444555554 567999999999998
No 15
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=100.00 E-value=1.7e-72 Score=640.77 Aligned_cols=196 Identities=60% Similarity=0.987 Sum_probs=185.4
Q ss_pred cCCCCCCCCCCCCCCCCCceEEEeecCCCCccccccCCCCceEeeccCcccccccccCHHHhhhcHhHHHHHHHhcCCcc
Q 005193 472 SSSLPGKLADCSSTTPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVERKDEAAMYKNEEIQNLIRALGLGVK 551 (709)
Q Consensus 472 ~~~lpgKL~Dc~~~~~~~~eL~lvEGDSA~Gsak~gRdr~~qailPLRGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~~ 551 (709)
...|||||+||+++|+++|||||||||||||||||||||+|||||||||||||||+++.+||++|+||++|++|||||+
T Consensus 3 ~~~lpgkl~dc~~~~~~~~eL~lvEGDSA~Gsak~gRd~~~qai~PLrGKiLNv~~a~~~~i~~n~Ei~~i~~alG~~~- 81 (692)
T 2xcs_B 3 VASLPGKLADCSSKSPEECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGTGI- 81 (692)
T ss_dssp ------CCBCCSCCCTTTCEEEEESSHHHHHHHHHHSCTTTEEEEECCSSCCCTTTSCHHHHHTCHHHHHHHHHHCSCC-
T ss_pred CCCCCchhhcCCCCCcccceEEEecCCcccCcccccccccccccccccCcccchhhCcHHHhhccHHHHHHHHHhCCCc-
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcCccccccceeEEEeecCCCCCchhhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCeEEEeeCHHHHHHHHHhC
Q 005193 552 GEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSSF 631 (709)
Q Consensus 552 ~~~~~~~~LRYgkIiImTDaDvDG~HI~~Llltff~~~~p~Li~~G~i~~~~tPL~kv~~gk~~~y~ys~~e~~~~~~~~ 631 (709)
+.+||+++||||||||||||||||+||+||||||||||||+||++||||+++||+
T Consensus 82 g~~~~~~~lrY~kiiImTDaD~DGsHI~~Llltff~r~~~~Li~~g~vyia~pP~------------------------- 136 (692)
T 2xcs_B 82 GGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPT------------------------- 136 (692)
T ss_dssp GGGCCGGGCSCSEEEECCCSSHHHHHHHHHHHHHHHHHCHHHHHTTCEEECCCCS-------------------------
T ss_pred CccccccccccceEEEeecCCCCcchhhhHHHHHHHHhChHHhhcCeeEEecCch-------------------------
Confidence 4679999999999999999999999999999999999999999999999999994
Q ss_pred CCCCcccceEeeccccCChhhhHhhhcCccceeeeeeccccHHHHHHHHHHhcCCCchHHHHHHHhccccC
Q 005193 632 PSNALYSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQNAANLV 702 (709)
Q Consensus 632 ~~~~~~~iqryKGLGem~~~q~~ett~dp~~r~l~~v~~~d~~~~~~~f~~lmg~~~~~RK~~i~~~~~~~ 702 (709)
||||||||||+|+|||||||++|++.+|+++|+.+++++|++|||+++++||+||++|+...
T Consensus 137 ---------~yKGLGem~~~ql~et~m~p~~r~l~~v~~~d~~~~~~~~~~lmg~~~~~Rk~~i~~~~~~~ 198 (692)
T 2xcs_B 137 ---------GYKGLGEMNADQLWETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYA 198 (692)
T ss_dssp ---------SCSSGGGSCHHHHHHHHTCTTTCCCEEEECCCHHHHHHHHHHHHSSCHHHHHHHHHHHCCCC
T ss_pred ---------hhcccccCCHHHHHHHhcCccceeEEEEecCchhhHHHHHHHHcCCCchHHHHHHHhcCCcc
Confidence 79999999999999999999999999999999989999999999999999999999998764
No 16
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=100.00 E-value=1.3e-64 Score=514.08 Aligned_cols=207 Identities=49% Similarity=0.855 Sum_probs=174.0
Q ss_pred CCCcccceeccChhhHhhCCCeeeccCCC-CchhHHHHHHHHhhHHhhccCCCCeEEEEEecCCc---------cccccC
Q 005193 76 TYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS---------IPIDLH 145 (709)
Q Consensus 76 ~Y~~~~Iq~L~glE~VrkRPgMYIGst~~-~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~Dgs---------IPvd~h 145 (709)
+|++++||+|+++|||||||||||||++. +||||||+||||||+||+++|+|+.|.|+|+.||+ ||+++|
T Consensus 4 ~y~~~~i~~l~~le~vr~rPgmYiG~~~~~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~~g~i~V~DnGrGIp~~~~ 83 (220)
T 4duh_A 4 SYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIH 83 (220)
T ss_dssp -----------CHHHHHHSTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHSCCCEEEEEECTTSCEEEEECSSCCCCSEE
T ss_pred ccChhHcEEechhHHHHhCCceEECCCCCcccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCcEEEEECCcCcccccc
Confidence 79999999999999999999999999998 89999999999999999999999999999998766 999999
Q ss_pred CCCCccceEEEEeeeccCCCCCCCCCceeeccCcccccceeeeeecceeEEEEEeCCEEEEEEccCCCCCcceeeeccCC
Q 005193 146 PATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPV 225 (709)
Q Consensus 146 ~~~g~~~~E~v~t~LhaGgkFd~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~Gk~y~q~f~~G~~~~~l~~~~~~~ 225 (709)
|++|+|++|+|||+||||+||+++ .|++||||||||+|||||||++|+|+|+|+|+.|+|+|++|+++.+++.+
T Consensus 84 ~~~~~~~~e~i~t~lhag~Kfd~~--~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g~~~~~~f~~G~~~~~l~~~---- 157 (220)
T 4duh_A 84 PEEGVSAAEVIMTVLHAGGKFDDN--SYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVT---- 157 (220)
T ss_dssp TTTTEEHHHHHHHSTTCSSCCCTT--C--------CCCHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSSCEEE----
T ss_pred cccCcchhhheeeecccCCCcCCC--ccccccCccceecchhcccccceEEEEEECCEEEEEEecCCcCcCCceec----
Confidence 999999999999999999999988 99999999999999999999999999999999999999999999888654
Q ss_pred CCCCCCCeEEEEEcCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCcCcceeEeecc
Q 005193 226 DSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG 292 (709)
Q Consensus 226 ~~~~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~LnpGL~I~l~der~~~~~~~~e~f~~~~ 292 (709)
+...++||+|+||||+++|.++..|++++|.+||+++|||||||+|.|+|+|.+ +.++|||+|
T Consensus 158 g~~~~~GT~V~F~Pd~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~~----~~~~~~y~g 220 (220)
T 4duh_A 158 GETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDG----KEDHFHYEG 220 (220)
T ss_dssp EECSCCEEEEEEEECTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEETTTC----CEEEEC---
T ss_pred cccCCCCcEEEEEECHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEccCCC----cEEEEEcCC
Confidence 335689999999999999975447999999999999999999999999999963 467899975
No 17
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=100.00 E-value=1.7e-63 Score=507.19 Aligned_cols=208 Identities=51% Similarity=0.842 Sum_probs=172.6
Q ss_pred CCCCcccceeccChhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHhhccCCCCeEEEEEecCCc---------cccccC
Q 005193 75 KTYGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS---------IPIDLH 145 (709)
Q Consensus 75 ~~Y~~~~Iq~L~glE~VrkRPgMYIGst~~~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~Dgs---------IPvd~h 145 (709)
++|++++||+|+++|||||||||||||++.+||||+|+||||||+||+++|+|+.|.|+|+.||+ ||++.|
T Consensus 9 ~~y~~~~i~~l~~le~vr~RPgmYiGs~~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g~i~V~DnG~GIp~~~h 88 (226)
T 4emv_A 9 NNYNDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDGSLTVQDHGRGMPTGMH 88 (226)
T ss_dssp --------CCCBCTHHHHHCHHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBC
T ss_pred hcCChhhcEEcchhHHHhhCCceEEcCCCcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCeEEEEEcCCCcccccc
Confidence 56999999999999999999999999999999999999999999999999999999999998766 999999
Q ss_pred CCCCccceEEEEeeeccCCCCCCCCCceeeccCcccccceeeeeecceeEEEEEeCCEEEEEEccCC-CCCcceeeeccC
Q 005193 146 PATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG-KPVTTLTCHVLP 224 (709)
Q Consensus 146 ~~~g~~~~E~v~t~LhaGgkFd~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~Gk~y~q~f~~G-~~~~~l~~~~~~ 224 (709)
++|+|++|+|||+||||+||+++ .|++||||||||+|||||||++|+|+|+|+|+.|+|+|++| +++.+++.+.
T Consensus 89 -~~~~~~~e~v~t~lhag~Kfd~~--~yk~SgGlhGvG~svvNALS~~l~v~v~r~g~~~~q~f~~Gg~~~~~l~~ig-- 163 (226)
T 4emv_A 89 -AMGIPTVEVIFTILHAGGKFGQG--GYKTSGGLHGVGSSVVNALSSWLEVEITRDGAVYKQRFENGGKPVTTLKKIG-- 163 (226)
T ss_dssp -GGGCBHHHHHHHCBC----------------CGGGCCHHHHHHTEEEEEEEEEETTEEEEEEEETTTEESSCSEEEE--
T ss_pred -ccCceehheeEEeecccCccCcc--ceEeccccccccchhhhhcccceEEEEEeCCcEEEEEECCCCEEcCCceEec--
Confidence 99999999999999999999998 99999999999999999999999999999999999999999 8988886551
Q ss_pred CCCCCCCCeEEEEEcCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCcCcceeEeecc
Q 005193 225 VDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG 292 (709)
Q Consensus 225 ~~~~~~~GT~V~F~PD~~iF~~~~~fd~~~l~~Rl~elA~LnpGL~I~l~der~~~~~~~~e~f~~~~ 292 (709)
.....++||+|+||||+++|++ ..|++++|.+||+++|||||||+|+|+|+|.+ ..++|||+|
T Consensus 164 ~~~~~~~GT~V~F~PD~~iF~~-~~~~~~~l~~rlrelA~ln~gv~i~l~der~~----~~~~f~y~g 226 (226)
T 4emv_A 164 TALKSKTGTKVTFMPDATIFST-TDFKYNTISERLNESAFLLKNVTLSLTDKRTD----EAIEFHYEN 226 (226)
T ss_dssp ECCTTCCEEEEEEEECTTTCSC-CCCCHHHHHHHHHHHHHHHCSCEEEEEETTTC----CEEEECCCC
T ss_pred ccCCCCCCeEEEEEECHHHcCC-CCcCHHHHHHHHHHHhhcCCCCEEEEEecCCC----cEEEEEcCC
Confidence 1212689999999999999975 57999999999999999999999999999964 357899985
No 18
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=100.00 E-value=1.6e-53 Score=426.63 Aligned_cols=187 Identities=52% Similarity=0.829 Sum_probs=169.8
Q ss_pred CCcccceeccChhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHhhccCCCCeEEEEEecCCc---------cccccCCC
Q 005193 77 YGSEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS---------IPIDLHPA 147 (709)
Q Consensus 77 Y~~~~Iq~L~glE~VrkRPgMYIGst~~~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~Dgs---------IPvd~h~~ 147 (709)
|++++||+|+|+|||||||||||||++.+||||+|+||||||+||+++|+|+.|.|+|+.||+ ||++.|++
T Consensus 2 y~~~~i~~l~~le~vr~RPgmYiGs~~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g~i~V~DnG~Gip~~~h~~ 81 (198)
T 3ttz_A 2 YGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNGRGIPVDIQEK 81 (198)
T ss_dssp CCHHHHHHHHHHHHHHHSHHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGGEEEEEECSSCCCCSBCTT
T ss_pred CChhHeEEecchHHHhcCCCcEECCCCCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCCeEEEEECCCCccccccCc
Confidence 999999999999999999999999999999999999999999999999999999999997654 99999999
Q ss_pred CCccceEEEEeeeccCCCCCCCCCceeeccCcccccceeeeeecceeEEEEEeCCEEEEEEccCCCCCcceeeeccCCCC
Q 005193 148 TNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDS 227 (709)
Q Consensus 148 ~g~~~~E~v~t~LhaGgkFd~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~Gk~y~q~f~~G~~~~~l~~~~~~~~~ 227 (709)
++++.+|+||| +|||||||++|+|+|+|+|+.|+|+|++|+++.+++.+ +.
T Consensus 82 ~~~~~~e~i~t-------------------------~SvVNALS~~l~v~v~r~g~~~~~~f~~G~~~~~l~~i----~~ 132 (198)
T 3ttz_A 82 MGRPAVEVILT-------------------------SSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEV----GT 132 (198)
T ss_dssp TSSBHHHHHHH-------------------------TCHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEE----EE
T ss_pred CCCccccccce-------------------------eEehhhhcCeEEEEEEECCcEEEEEEeCCEECCCceec----cC
Confidence 99999999877 99999999999999999999999999999999888655 33
Q ss_pred CCCCCeEEEEEcCcccc-cccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCcCcceeEeecccH
Q 005193 228 KDRQGTRIRFWPDKQVF-TTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGL 294 (709)
Q Consensus 228 ~~~~GT~V~F~PD~~iF-~~~~~fd~~~l~~Rl~elA~LnpGL~I~l~der~~~~~~~~e~f~~~~Gl 294 (709)
..++||+|+||||+++| ++ ..|++++|.+||+++|||||||+|+|+|+|.+.+ .+.++|||+|||
T Consensus 133 ~~~~GT~V~F~Pd~~iF~~~-~~~~~~~l~~rlrelA~ln~gv~i~l~der~~~~-~~~~~f~~~gGi 198 (198)
T 3ttz_A 133 TDKTGTVIRFKADGEIFTET-TVYNYETLQQRIRELAFLNKGIQITLRDERDEEN-VREDSYHYEGGI 198 (198)
T ss_dssp CSCCEEEEEEEECTTTCCSC-CCCCHHHHHHHHHHHHHHSTTCEEEEEECSSTTS-CEEEEECCC---
T ss_pred CCCCCcEEEEEECHHHhccC-CccCHHHHHHHHHHHhhcCCCCEEEEEeecCCCC-cceEEEEcCCCC
Confidence 46799999999999999 54 5799999999999999999999999999995411 145799999996
No 19
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=100.00 E-value=1.6e-50 Score=406.19 Aligned_cols=192 Identities=43% Similarity=0.742 Sum_probs=155.1
Q ss_pred ChhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHhhccCCCCeEEEEEecCCc---------cccccCCCCCccceEEEE
Q 005193 87 GLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS---------IPIDLHPATNKSALETVL 157 (709)
Q Consensus 87 glE~VrkRPgMYIGst~~~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~Dgs---------IPvd~h~~~g~~~~E~v~ 157 (709)
|||||||||||||||+++ +|+|+|+|+||+|++++|+|+.|.|+|++||+ ||++.||++|+|++|+||
T Consensus 1 gle~vr~rpgmyig~~~~---~~~v~Elv~NsiDa~~~g~a~~I~V~i~~~g~i~V~DnG~GIp~~~~~~~~~~~~e~i~ 77 (201)
T 3fv5_A 1 GLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELIL 77 (201)
T ss_dssp CCHHHHHCGGGTSCTTST---HHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCEEEEECSSCCCCSBCTTCSSBHHHHHH
T ss_pred CchhhccCCccEECCCCh---hhhhHHHHHHHHHHHhcCCCcEEEEEEeCCCEEEEEECCCCcCcccccccCcchhheee
Confidence 799999999999999886 99999999999999999999999999997665 999999999999999999
Q ss_pred eeeccCCCCCCCCCceeeccCcccccceeeeeecceeEEEEEeCCEEEEEEccCCCCCcceeeeccCCCCCCCCCeEEEE
Q 005193 158 TVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRF 237 (709)
Q Consensus 158 t~LhaGgkFd~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~Gk~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F 237 (709)
+++|||+||+++ .|++|||+||+|++++||||++|+|+++|+|+.|+|+|++|+++.+++.+. .....++||+|+|
T Consensus 78 ~~~hatsK~~~~--~~~~s~GfrGeglssinalS~~l~v~t~~~g~~~~~~~~~G~~~~~~~~~g--~~~~~~~GT~V~f 153 (201)
T 3fv5_A 78 CRLHAGGKFSNK--NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVG--TCGKRNTGTSVHF 153 (201)
T ss_dssp HCC-----------------------CHHHHHTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEE--ECCTTCCEEEEEE
T ss_pred eeeccccCcCCC--cccccCcccceecchhhcccceEEEEEEecCceEEEEEeCCEEcccceecc--cCCCCCCCeEEEE
Confidence 999999999987 899999999999999999999999999999999999999999987775541 0112579999999
Q ss_pred EcCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCcCcceeEee
Q 005193 238 WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF 290 (709)
Q Consensus 238 ~PD~~iF~~~~~fd~~~l~~Rl~elA~LnpGL~I~l~der~~~~~~~~e~f~~ 290 (709)
+||+++|+ ...++++.|.+||+++|+|||||+|+|++++.+ +.+.|||
T Consensus 154 ~Pdr~~F~-~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~r~~----~~~~~~y 201 (201)
T 3fv5_A 154 WPDETFFD-SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN----TEQRWCY 201 (201)
T ss_dssp EECGGGSS-CCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTT----EEEEECC
T ss_pred EECHHHcC-CCccCHHHHHHHHHHHHHhCCCCEEEEEecCCC----cEEEEEC
Confidence 99999996 457999999999999999999999999999964 3567876
No 20
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=100.00 E-value=1e-35 Score=341.39 Aligned_cols=301 Identities=17% Similarity=0.177 Sum_probs=225.2
Q ss_pred cceeccChhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHhhc-cCCCCeEEEEEecCC-c---cccccCCCCCcc--ce
Q 005193 81 QIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQ-AGYASNIEVALLADN-S---IPIDLHPATNKS--AL 153 (709)
Q Consensus 81 ~Iq~L~glE~VrkRPgMYIGst~~~GL~hlv~EIldNavDe~~-~g~~~~I~V~i~~Dg-s---IPvd~h~~~g~~--~~ 153 (709)
+.+.++-.++++++|+||..+.++.+|+++++|+|+||+|... +|++..|.|+++.+| . |=|.. ...|++ .+
T Consensus 12 ~~k~isi~~~~~~~~~~~~~~~D~~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~D-nG~GIp~e~l 90 (621)
T 2q2e_B 12 KQKSISVAEFFEKNRQILGFDSAPRSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIED-NGPGIVREQI 90 (621)
T ss_dssp CCCCSCSHHHHHHSTTTSSCSSHHHHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEEC-CSCCCCGGGH
T ss_pred HhhcCceEEEecCCCceeEEecCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEE-CCCCCCHHHH
Confidence 3445666789999999998888889999999999999999988 577888888777655 1 22211 112221 12
Q ss_pred EEEEeeeccCCCCCCCCCceeeccCcccccceeeeeeccee-----EEEEEeCC--EEEEEEc----cCCCCCcceeeec
Q 005193 154 ETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESL-----EVTVWRDG--MEYHQKY----SRGKPVTTLTCHV 222 (709)
Q Consensus 154 E~v~t~LhaGgkFd~~~~~ykvsGGlhGvGasvvNAlS~~f-----~Vev~r~G--k~y~q~f----~~G~~~~~l~~~~ 222 (709)
+.+|+.+|++++|.. ++.++|.||+|++++|++|+.+ +|++.++| ..|+++| ++|++.......
T Consensus 91 ~~iF~~~~atskf~~----~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~- 165 (621)
T 2q2e_B 91 PKVFAKLLYGSRFHA----LKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEV- 165 (621)
T ss_dssp HHHHSCCCCC--CCC----CC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEE-
T ss_pred HHHhhhhccCCcccc----ccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhccccccccccc-
Confidence 348999999999964 4688899999999999999996 99999877 7899999 788776522111
Q ss_pred cCCCCCCCCCeEEEEEcCcccccccccCCH---HHHHHHHHHHhhcCCCcEEEEeecCCCCCcCcceeEeecccHHHHHH
Q 005193 223 LPVDSKDRQGTRIRFWPDKQVFTTAIQFDH---NTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYVQ 299 (709)
Q Consensus 223 ~~~~~~~~~GT~V~F~PD~~iF~~~~~fd~---~~l~~Rl~elA~LnpGL~I~l~der~~~~~~~~e~f~~~~Gl~dyv~ 299 (709)
......+||+|+|+ |.. .++. +.|.+|++++|++|||++|+|++++. +.|+|++|+ .
T Consensus 166 --~~~~~~~GT~V~~~-----f~~--~~~~~~~~~I~~~L~~lAllnpgv~I~L~d~~~-------~~~~~~gg~----~ 225 (621)
T 2q2e_B 166 --RDWFRPHGTQIELE-----MRA--AYVKGRRQSIYEYLKATAIVNPHARITLIDPDG-------NEEVFERAT----D 225 (621)
T ss_dssp --CCCSCSSCCCEEEE-----CSC--CCCCCSSSSSHHHHHHHHHHCCSCEEEECCTTS-------CCEEEECCC----C
T ss_pred --ccCCCCCCCEEEEE-----ecC--ccchHHHHHHHHHHHHHHhhCCCCEEEEEECCc-------eEEEeCCcc----c
Confidence 12245789999999 432 2444 78999999999999999999999762 579999997 3
Q ss_pred HHhcCCCCCCceeEEEEeecCeEEEEEEEEcCCCCCceeeeeeCceecCCCccchHHHHHHHHHHHHHHHhhcccCCC-C
Q 005193 300 WLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKD-K 378 (709)
Q Consensus 300 ~l~~~~~~l~~~i~~~~~~~~~~veval~~s~~~~~~~~~SFVN~I~T~~GGTHv~g~~~altr~ln~~~kk~~~~K~-k 378 (709)
+++....++++.++ +.... .++++++|+ ++| ++.||||+|+|.+|| +++|+|+++.++.|+ +
T Consensus 226 ~L~~~~~~i~p~~~--G~~~~-~~eval~~~-~~~--~i~sFvN~i~T~~GG-----------r~in~~~~~~~l~k~~~ 288 (621)
T 2q2e_B 226 KMPEPAEEILPHPE--GIELG-TLMKMLHYT-ERQ--KLAPFLRYSFCKIGL-----------LTAEEICKAAGLDPEID 288 (621)
T ss_dssp CCCCCCCCCCCCST--TCCHH-HHHHHHHHC-C-------CTTSSSSCC--C-----------HHHHHHHHTTTCCTTSC
T ss_pred chhcccccccCCce--eeccC-eEEEEEeeC-CCe--EEEEEeCCcccCCCH-----------HHHHHHHHHhCcccccc
Confidence 45555555553221 11112 467889987 677 589999999999999 678899998888776 5
Q ss_pred CCCCCHhhhccceEEEEEEeecCCCCCCccccccCCchhhhhhhhhHHHHHHHHHh
Q 005193 379 DISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLE 434 (709)
Q Consensus 379 ~~~l~~~dIregL~~vVsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~le 434 (709)
+.+++++|||+||++|+||+++||+|+ +++.+++..+.+.|.+||.
T Consensus 289 ~~~lt~dDiregL~avisvki~~Pqtk----------~l~pige~~i~~~l~~~~~ 334 (621)
T 2q2e_B 289 PHALGRHEARKLIEAFEKVKIMAPPTD----------CLSPIGEDLIYRGLEKETT 334 (621)
T ss_dssp SSSCCSSSSTTTTHHHHTSCCSCCCST----------TCCCCCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHhhcEEEEEEECCCCCcc----------ccChhHHHHHHHHHHHhcC
Confidence 678999999999999999999999754 6778888899999998883
No 21
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.76 E-value=1.6e-20 Score=212.77 Aligned_cols=279 Identities=13% Similarity=0.124 Sum_probs=181.5
Q ss_pred cceeccChhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHhhccCC-CCeEEEEEecCC----c--cccccCCCCCcc--
Q 005193 81 QIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGY-ASNIEVALLADN----S--IPIDLHPATNKS-- 151 (709)
Q Consensus 81 ~Iq~L~glE~VrkRPgMYIGst~~~GL~hlv~EIldNavDe~~~g~-~~~I~V~i~~Dg----s--IPvd~h~~~g~~-- 151 (709)
+++.++..|.++++|+||+.+.+...|++++.|+|+||+|....|. ...|.|++..++ . |=|.. ...|++
T Consensus 6 ~~k~isi~eff~~~~~l~i~~~d~~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~D-nG~GI~~e 84 (530)
T 2zbk_B 6 KFTSLSPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVD-NGIGIPPQ 84 (530)
T ss_dssp --------CGGGTCCGGGTCSSHHHHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEEC-CSCCCCGG
T ss_pred HhhhcChhheeecCCCceEEcCcHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEE-CCCCCCHH
Confidence 4556677789999999999988778999999999999999876652 115666655433 1 22211 112221
Q ss_pred ceEEEEeeeccCCCCCCCCCceeeccCcccccceeeeeecc-----eeEEEEEeCCE--EEEEEc--c---CCCCCccee
Q 005193 152 ALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSE-----SLEVTVWRDGM--EYHQKY--S---RGKPVTTLT 219 (709)
Q Consensus 152 ~~E~v~t~LhaGgkFd~~~~~ykvsGGlhGvGasvvNAlS~-----~f~Vev~r~Gk--~y~q~f--~---~G~~~~~l~ 219 (709)
.++.+|..+++++|+. +..++|.+|+|+++|+.+++ ++.|++..++. .++..+ . ++....+..
T Consensus 85 ~l~~iF~~f~~tsk~~-----~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~ 159 (530)
T 2zbk_B 85 EVPNAFGRVLYSSKYV-----NRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERG 159 (530)
T ss_dssp GSHHHHTSCCCSCCCC-----CSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHhccccccCCcc-----cccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCcccccc
Confidence 2446788888888873 24567889999999999999 78998887653 333332 1 111212221
Q ss_pred eeccCCCCCCCCCeEEEEEcCcccccccccCCH-HHHHHHHHHHhhcCCCcEEEEeecCCCCCcCcceeEeecccHHHHH
Q 005193 220 CHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDH-NTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAGGLEEYV 298 (709)
Q Consensus 220 ~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~fd~-~~l~~Rl~elA~LnpGL~I~l~der~~~~~~~~e~f~~~~Gl~dyv 298 (709)
.. ......+||+|+++ |..+ .+.. ..+.++++++|++||+++|.|.+.. .+.|.+.+..
T Consensus 160 ~~---~~~~~~~GT~V~v~-----l~~~-~~e~~~~i~~~l~~~Al~~p~v~~~l~~~~-------~~~~~~~~~~---- 219 (530)
T 2zbk_B 160 SV---ENTRGFHGTSVAIS-----IPGD-WPKAKSRIYEYIKRTYIITPYAEFIFKDPE-------GNVTYYPRLT---- 219 (530)
T ss_dssp EE---ECCSSCCEEEEEEE-----EECC-HHHHHHHHHHHHHHHHHHCTTCCEEEECTT-------SCEEEECCCC----
T ss_pred cc---CCCCCCCCcEEEEE-----eccc-hhhHHHHHHHHHHHHHHHCCCcEEEEEECC-------CeEEEecCcc----
Confidence 11 01235689999999 4322 2444 7899999999999999999999854 2356665522
Q ss_pred HHHhcCCCCCCceeEEEEeecCeEEEEEEE-EcCCCCCc-eeeeeeCceecCCCccchHHHHHHHHHHHHHHHhhcccCC
Q 005193 299 QWLNTDKKPLHDVVGFRKDVDGITIDLALQ-WCSDAYSD-TMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVK 376 (709)
Q Consensus 299 ~~l~~~~~~l~~~i~~~~~~~~~~veval~-~s~~~~~~-~~~SFVN~I~T~~GGTHv~g~~~altr~ln~~~kk~~~~K 376 (709)
+.+..... ..+ ....|+.++.+++ |+ .++.+ ++.+|+|++.|..||+|+++|++++ ++.+
T Consensus 220 ~~lp~~~~---~~~---~~~~Gi~~~~~l~~~~-~~~~~~~l~~fl~~~ft~~g~~~a~~~~~~~-----------gl~~ 281 (530)
T 2zbk_B 220 NKIPKPPQ---EVK---PHPYGVDREEIKILIN-NLKRDYTIKEFLVNEFQSIGDTTADKILELA-----------GLKP 281 (530)
T ss_dssp CCCCCCCC---CCC---CCGGGCCHHHHHHHHT-TCSSCCBHHHHHHTTSTTCCHHHHHHHHHHT-----------TCCS
T ss_pred ccccCCcc---eec---cCCCChhHHHHHHHHh-ccCCCceeHhhhcCccccccHHHHHHHHHhh-----------CCCC
Confidence 11111000 000 0123555556666 54 55666 7899999999999999999999865 3333
Q ss_pred CC-CCCCCHhhhccceEEEEEEe-ecCCC
Q 005193 377 DK-DISLSGEHVREGLTCIISVR-VPNPE 403 (709)
Q Consensus 377 ~k-~~~l~~~dIregL~~vVsvk-i~nP~ 403 (709)
+. ..+++++|++++|.++.+++ +++|.
T Consensus 282 ~~~~~~l~~~~~~~ll~a~~~~k~~~~P~ 310 (530)
T 2zbk_B 282 NKKVKNLTEEEITRLVETFKKDEDFRSPS 310 (530)
T ss_dssp SCBSSCCCHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCcccCCHHHHHHHHHHHHhccCCCCCC
Confidence 33 35899999999999999998 77775
No 22
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.71 E-value=2.4e-17 Score=177.33 Aligned_cols=278 Identities=18% Similarity=0.213 Sum_probs=185.8
Q ss_pred cceeccChhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHhhccCCCCeEEEEEecCCc--cccccCCCCCccc--eEEE
Q 005193 81 QIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS--IPIDLHPATNKSA--LETV 156 (709)
Q Consensus 81 ~Iq~L~glE~VrkRPgMYIGst~~~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~Dgs--IPvd~h~~~g~~~--~E~v 156 (709)
.|+.|+.-..-+.++|..| ..+.+++.|+|+||+|- + ++.|.|.++.+|. |-|.. ...|++. ++.+
T Consensus 4 ~I~~L~~~~~~~I~agevi-----~~~~~~v~ELi~NaidA---~-a~~I~I~i~~~~~~~i~V~D-nG~Gi~~~~l~~~ 73 (333)
T 1b63_A 4 PIQVLPPQLANQIAAGEVV-----ERPASVVKELVENSLDA---G-ATRIDIDIERGGAKLIRIRD-NGCGIKKDELALA 73 (333)
T ss_dssp CCCCCCHHHHHHHHHHHHC-----SSHHHHHHHHHHHHHHT---T-CSEEEEEEEGGGTSEEEEEE-CSCCCCGGGHHHH
T ss_pred cceECCHHHHHHHhcCCch-----hCHHHHHHHHHHHHHHC---C-CCeEEEEEEeCCceEEEEEE-cCCCcCHHHHHHh
Confidence 4889998888888999887 46799999999999993 3 6789999887653 33321 1233332 2334
Q ss_pred EeeeccCCCCCCCCCcee-eccCcccccceeeeeecceeEEEEEeCCE-EEEEEccCCCCC-cceeeeccCCCCCCCCCe
Q 005193 157 LTVLHAGGKFGGSSSGYS-VSGGLHGVGLSVVNALSESLEVTVWRDGM-EYHQKYSRGKPV-TTLTCHVLPVDSKDRQGT 233 (709)
Q Consensus 157 ~t~LhaGgkFd~~~~~yk-vsGGlhGvGasvvNAlS~~f~Vev~r~Gk-~y~q~f~~G~~~-~~l~~~~~~~~~~~~~GT 233 (709)
|+ .|+++|+.+.++.++ .+.|.+|+|++.++++| +++|+++++|. .+.+.|.+|... .+... ....+||
T Consensus 74 ~~-~~~tsK~~~~~d~~~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~GT 145 (333)
T 1b63_A 74 LA-RHATSKIASLDDLEAIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTVKP------AAHPVGT 145 (333)
T ss_dssp HS-TTCCSSCCSHHHHHTCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEEEE------ECCCSEE
T ss_pred hh-cccccCccccchhhhccccCccccchhhhhcCC-cEEEEEecCCCceEEEEEEcCCcceEeeec------ccCCCCC
Confidence 54 356778754111233 57899999999999999 79999998763 234447777652 22211 1346899
Q ss_pred EEEEE------cCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCcCcceeEeecc-----cHHHHHHHHh
Q 005193 234 RIRFW------PDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG-----GLEEYVQWLN 302 (709)
Q Consensus 234 ~V~F~------PD~~iF~~~~~fd~~~l~~Rl~elA~LnpGL~I~l~der~~~~~~~~e~f~~~~-----Gl~dyv~~l~ 302 (709)
+|+|+ |+...|-.+...+++.|.++++.+|++||++++.|.+.. ...+.+++ ++.+++..+.
T Consensus 146 ~V~v~~Lf~n~P~r~kflk~~~~e~~~i~~~~~~~al~~p~v~~~l~~ng-------~~~~~~~~~~~~~~~~~~i~~i~ 218 (333)
T 1b63_A 146 TLEVLDLFYNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNG-------KIVRQYRAVPEGGQKERRLGAIC 218 (333)
T ss_dssp EEEEESTTTTCHHHHHTCCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETT-------EEEEEECCCCTTCCTHHHHHHHH
T ss_pred EEEEecccccchhhhhhhccHHHHHHHHHHHHHHHhccCCCcEEEEEECC-------EEEEecCCCCCCchHHHHHHHHh
Confidence 99999 999888433345678899999999999999999997642 23445443 7888888765
Q ss_pred cCCCCCCceeEEEEeecCeEEEEEEEEcCC--CC-CceeeeeeCceecCCCccchHHHHHHHHHHHHHHHhhcccCCCCC
Q 005193 303 TDKKPLHDVVGFRKDVDGITIDLALQWCSD--AY-SDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKD 379 (709)
Q Consensus 303 ~~~~~l~~~i~~~~~~~~~~veval~~s~~--~~-~~~~~SFVN~I~T~~GGTHv~g~~~altr~ln~~~kk~~~~K~k~ 379 (709)
.. +...+.+.+..+.+++.++..+++... ++ .+.++.|||+.+..+ ..|.++|++..+.. +.+.
T Consensus 219 G~-~~~~~li~i~~~~~~~~v~G~i~~p~~~~~~~~~~~~~fvNgR~V~~---------~~l~~ai~~~y~~~-l~~~-- 285 (333)
T 1b63_A 219 GT-AFLEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRD---------RLINHAIRQACEDK-LGAD-- 285 (333)
T ss_dssp CH-HHHHHEEEEEEEETTEEEEEEEECGGGCCTTGGGCEEEEETTEECCC---------HHHHHHHHHHHHHH-SSSC--
T ss_pred Ch-hhHhheEEEEecCCCEEEEEEEEcCccccCCCCCcEEEEECCEEecC---------HHHHHHHHHHHHhh-ccCC--
Confidence 32 111134566667778889988887631 33 467899999999865 34555554433221 1111
Q ss_pred CCCCHhhhccceEEEEEEeecCCCCC
Q 005193 380 ISLSGEHVREGLTCIISVRVPNPEFE 405 (709)
Q Consensus 380 ~~l~~~dIregL~~vVsvki~nP~Fe 405 (709)
..=.+++++.++.-..|
T Consensus 286 ---------~~P~~~l~l~~~p~~vD 302 (333)
T 1b63_A 286 ---------QQPAFVLYLEIDPHQVD 302 (333)
T ss_dssp ---------CCCCEEEEEECCGGGEE
T ss_pred ---------CCcEEEEEEEeCchhcc
Confidence 12257888888754444
No 23
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.4e-16 Score=171.69 Aligned_cols=282 Identities=12% Similarity=0.138 Sum_probs=175.5
Q ss_pred cccceeccChhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHhhccCCCCeEEEEEecCCc--cccccCCCCCccc--eE
Q 005193 79 SEQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS--IPIDLHPATNKSA--LE 154 (709)
Q Consensus 79 ~~~Iq~L~glE~VrkRPgMYIGst~~~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~Dgs--IPvd~h~~~g~~~--~E 154 (709)
+..|+.|+.-..-+.++|++|. .+.+++.|+|+||+|. .++.|.|.++.+|. |-|.. ...|++. ++
T Consensus 6 ~~~I~~L~~~~~~~Iaagevi~-----~~~~vv~eLv~NAidA----~a~~I~I~i~~~~~~~I~V~D-nG~GI~~~~l~ 75 (348)
T 3na3_A 6 AGVIRRLDETVVNRIAAGEVIQ-----RPANAIKEMIENCLDA----KSTSIQVIVKEGGLKLIQIQD-NGTGIRKEDLD 75 (348)
T ss_dssp CCCCCCCCHHHHHHHHHHHHCC-----SHHHHHHHHHHHHHHT----TCSEEEEEEEGGGTSEEEEEE-CSCCCCGGGGG
T ss_pred ccccccCCHHHHHhhcccCccc-----CHHHHHHHHHHHHHHc----CCCEEEEEEEeCCEEEEEEEE-CCcCcChHHhh
Confidence 4469999999999999999975 4689999999999997 36789998876554 22221 1222221 22
Q ss_pred EEEeeeccCCCCCCCCCce-eeccCcccccceeeeeecceeEEEEEeCC--EEEEEEccCCCCCcceeeeccCCCCCCCC
Q 005193 155 TVLTVLHAGGKFGGSSSGY-SVSGGLHGVGLSVVNALSESLEVTVWRDG--MEYHQKYSRGKPVTTLTCHVLPVDSKDRQ 231 (709)
Q Consensus 155 ~v~t~LhaGgkFd~~~~~y-kvsGGlhGvGasvvNAlS~~f~Vev~r~G--k~y~q~f~~G~~~~~l~~~~~~~~~~~~~ 231 (709)
. +...|+++|+++.++.| ..|+|+||+|++.+|++| +++|+++++| ..|++.|.+|.+..++... ..++
T Consensus 76 ~-~~~~~~tsK~~~~~dl~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~------~~~~ 147 (348)
T 3na3_A 76 I-VCERFTTSKLQSFEDLASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKPC------AGNQ 147 (348)
T ss_dssp T-TTSTTCCSSCCCC---------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCCEEE------CCCS
T ss_pred h-hhccccccccCcchhhhccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeeeeEe------cCCC
Confidence 2 34678899987532233 579999999999999999 7999999987 4799999999876544322 3478
Q ss_pred CeEEEE------EcCcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCcCcceeEee--cccHHHHHHHHhc
Q 005193 232 GTRIRF------WPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF--AGGLEEYVQWLNT 303 (709)
Q Consensus 232 GT~V~F------~PD~~iF~~~~~fd~~~l~~Rl~elA~LnpGL~I~l~der~~~~~~~~e~f~~--~~Gl~dyv~~l~~ 303 (709)
||+|+| +|+..+|-.+...+++.|.++++++|++|||+++.|.+.... ...|.. .+.+.+=+..+-.
T Consensus 148 GTtV~v~~LF~n~P~R~k~lk~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~g~~-----~~~~~~~~~~~~~~~i~~i~G 222 (348)
T 3na3_A 148 GTQITVEDLFYNIATRRKALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGET-----VADVRTLPNASTVDNIRSIFG 222 (348)
T ss_dssp EEEEEEESTTTTCHHHHHTSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCS-----SCSEECCTTCCHHHHHHHHHC
T ss_pred CcEEEECcccccCchhhhhccccHHHHHHHHHHHHHHHhhCCCeEEEEEECCEE-----EEEeecCCCCCHHHHHHHHhC
Confidence 999999 799988832334667889999999999999999999986421 112322 2346665544432
Q ss_pred CCCCCCceeEEEEeec--CeEEEEEEEEcCCC-CCceeeeeeCceecCCCccchHHHHHHHHHHHHHHHhhcccCCCCCC
Q 005193 304 DKKPLHDVVGFRKDVD--GITIDLALQWCSDA-YSDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDI 380 (709)
Q Consensus 304 ~~~~l~~~i~~~~~~~--~~~veval~~s~~~-~~~~~~SFVN~I~T~~GGTHv~g~~~altr~ln~~~kk~~~~K~k~~ 380 (709)
..- ....+.+..+.+ ++.++.-+.-..-. -...++-|||+-+-.. ..|.++|++..+. .+.+
T Consensus 223 ~~~-~~~l~~v~~~~~~~~~~i~G~is~p~~~~~~~~q~~fVNgR~v~~---------~~l~~ai~~~y~~--~l~~--- 287 (348)
T 3na3_A 223 NAV-SRELIEIGCEDKTLAFKMNGYISNANYSVKKCIFLLFINHRLVES---------TSLRKAIETVYAA--YLPK--- 287 (348)
T ss_dssp HHH-HTTEEEEEEEEGGGTEEEEEEEECSSCCBSSCEEEEEETTEECCC---------TTHHHHHHHHHHT--TSCT---
T ss_pred hHh-HhhcEEEEeecCCccEEEEEEEeCCccCCCcccEEEEECCeEecC---------HHHHHHHHHHHHH--hCcC---
Confidence 110 011223333332 35555333222111 1235789999977543 2344555443332 1111
Q ss_pred CCCHhhhccceEEEEEEeecCCCCC
Q 005193 381 SLSGEHVREGLTCIISVRVPNPEFE 405 (709)
Q Consensus 381 ~l~~~dIregL~~vVsvki~nP~Fe 405 (709)
...=.+++++.++.-..|
T Consensus 288 -------~~~P~~~L~l~~~p~~vD 305 (348)
T 3na3_A 288 -------NTHPFLYLSLEISPQNVD 305 (348)
T ss_dssp -------TCBCEEEEEEECC-----
T ss_pred -------CCceEEEEEEEeChhhee
Confidence 023378888888855555
No 24
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.6e-15 Score=164.76 Aligned_cols=274 Identities=16% Similarity=0.152 Sum_probs=169.3
Q ss_pred cceeccChhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHhhccCCCCeEEEEEecCCc-----------cccccCCCCC
Q 005193 81 QIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS-----------IPIDLHPATN 149 (709)
Q Consensus 81 ~Iq~L~glE~VrkRPgMYIGst~~~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~Dgs-----------IPvd~h~~~g 149 (709)
.|+.|+.-..-+.++|++|.+ +.+++.|+|+||+|. | ++.|.|+++.+|. ||.+..+.
T Consensus 5 ~I~~L~~~~~~~I~agevi~~-----~~~vv~eLv~NaiDA---~-a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~-- 73 (367)
T 3h4l_A 5 QIHQINDIDVHRITSGQVITD-----LTTAVKELVDNSIDA---N-ANQIEIIFKDYGLESIECSDNGDGIDPSNYEF-- 73 (367)
T ss_dssp --------CTHHHHHHHHCCS-----HHHHHHHHHHHHHHT---T-CSEEEEEEETTTTSEEEEEECSCCCCGGGTTT--
T ss_pred cceeCCHHHHHHhcCCCcccC-----HHHHHHHHHHHHHHC---C-CCEEEEEEEeCCEEEEEEEECCCCcChhHhcc--
Confidence 488999988888899999754 689999999999994 3 6789999876552 55554431
Q ss_pred ccceEEEEeeeccCCCCCCCC-CceeeccCcccccceeeeeecceeEEEEEeCC-EEEEEEcc-CCCCCcceeeeccCCC
Q 005193 150 KSALETVLTVLHAGGKFGGSS-SGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYS-RGKPVTTLTCHVLPVD 226 (709)
Q Consensus 150 ~~~~E~v~t~LhaGgkFd~~~-~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~G-k~y~q~f~-~G~~~~~l~~~~~~~~ 226 (709)
++..|+.+|+.+.+ -....|+|+||+|++.+|++| +++|+++++| .-|++.|. +|......+
T Consensus 74 -------~~~~~~tsK~~~~~Dl~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G~~~~~~~------- 138 (367)
T 3h4l_A 74 -------LALKHYTSKIAKFQDVAKVQTLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDMVGHITSKTT------- 138 (367)
T ss_dssp -------TTCCEEC---------CCCCEEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECTTCCEEEEEE-------
T ss_pred -------ceeccccCcCCchhhhhhhhccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcCCCcEEeecc-------
Confidence 24567778876432 234579999999999999999 5999999887 78999997 676654321
Q ss_pred CCCCCCeEEEE------EcCccc-ccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCcCcceeEee--cccHHHH
Q 005193 227 SKDRQGTRIRF------WPDKQV-FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFF--AGGLEEY 297 (709)
Q Consensus 227 ~~~~~GT~V~F------~PD~~i-F~~~~~fd~~~l~~Rl~elA~LnpGL~I~l~der~~~~~~~~e~f~~--~~Gl~dy 297 (709)
....+||+|+| +|+..+ |..+...++..|.++++++|++|||+++.|.+..... .....|.. .+.+.+-
T Consensus 139 ~~~~~GTtV~v~~LF~n~P~R~k~flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~~~~~~~--~~~~~~~t~~~~~~~~~ 216 (367)
T 3h4l_A 139 TSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTVIQGYAIINAAIKFSVWNITPKG--KKNLILSTMRNSSMRKN 216 (367)
T ss_dssp ECCSSEEEEEEESTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTS--CEEEEEECCSSCCHHHH
T ss_pred ccCCCCeEEEEchhhccCchhhhhhccchHHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCC--cceEEEECCCCCCHHHH
Confidence 13468999999 799988 8433456778999999999999999999998643210 01223332 2457776
Q ss_pred HHHHhcCCCCCCceeEEEE-----------------------eecCeEEEEEEEEcC----CCCCceeeeeeCceecCCC
Q 005193 298 VQWLNTDKKPLHDVVGFRK-----------------------DVDGITIDLALQWCS----DAYSDTMLGYANSIRTIDG 350 (709)
Q Consensus 298 v~~l~~~~~~l~~~i~~~~-----------------------~~~~~~veval~~s~----~~~~~~~~SFVN~I~T~~G 350 (709)
+..+-...-. ...+.+.. +..++.++.-+.-.. ..-...++-|||+=+-..
T Consensus 217 i~~i~G~~~~-~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVNgR~v~~- 294 (367)
T 3h4l_A 217 ISSVFGAGGM-RGLEEVDLVLDLNPFKNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEY- 294 (367)
T ss_dssp HHHHHCTTTT-TTEEEEEEEEECGGGCCCCC------------CCEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECC-
T ss_pred HHHHhCHHHH-hccEEEecccccccccccccccccccccccccCCcEEEEEEEeCCcccccCCCCCcEEEEECCCEecC-
Confidence 6555433211 11111111 223344543222110 011245789999977543
Q ss_pred ccchHHHHHHHHHHHHHHHhhcccCCCCCCCCCHhhhccceEEEEEEeecCCCCC
Q 005193 351 GTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFE 405 (709)
Q Consensus 351 GTHv~g~~~altr~ln~~~kk~~~~K~k~~~l~~~dIregL~~vVsvki~nP~Fe 405 (709)
..|.++|++..+... + ...=.+++++.++.-.+|
T Consensus 295 --------~~l~~ai~~~y~~~~--~-----------~~~P~~~L~l~~~p~~vD 328 (367)
T 3h4l_A 295 --------STLLKCCNEVYKTFN--N-----------VQFPAVFLNLELPMSLID 328 (367)
T ss_dssp --------HHHHHHHHHHHHTTC--S-----------SCBCCEEEEEECCGGGEE
T ss_pred --------HHHHHHHHHHHHhcC--C-----------CCCcEEEEEEEcChHHcc
Confidence 356677765444321 1 123368888888755555
No 25
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.58 E-value=5.3e-14 Score=157.73 Aligned_cols=314 Identities=13% Similarity=0.178 Sum_probs=188.3
Q ss_pred ccceeccChhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHhhccCC-CCeEEEEEecCC----c--cccccCCCCCcc-
Q 005193 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGY-ASNIEVALLADN----S--IPIDLHPATNKS- 151 (709)
Q Consensus 80 ~~Iq~L~glE~VrkRPgMYIGst~~~GL~hlv~EIldNavDe~~~g~-~~~I~V~i~~Dg----s--IPvd~h~~~g~~- 151 (709)
++++.++..|..+++|+||+.+.+...|++++.|+|+||+|....|. .-.|.|++..++ . |-|.. ...|++
T Consensus 6 ~~~k~is~~eff~~~~~~~~~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~D-nG~GI~~ 84 (471)
T 1mu5_A 6 EKFTSLSPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVD-NGIGIPP 84 (471)
T ss_dssp -----CCHHHHHHHCGGGTTCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEEC-CSCCCCG
T ss_pred HHHhhcCHHHhhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEE-CCCCCCH
Confidence 35566777889999999999999889999999999999999876652 115777666533 1 22221 122222
Q ss_pred -ceEEEEeeeccCCCCCCCCCceeeccCcccccceeeeeecce-----eEEEEEeCCE--EEEEEc--c----CCCCCcc
Q 005193 152 -ALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSES-----LEVTVWRDGM--EYHQKY--S----RGKPVTT 217 (709)
Q Consensus 152 -~~E~v~t~LhaGgkFd~~~~~ykvsGGlhGvGasvvNAlS~~-----f~Vev~r~Gk--~y~q~f--~----~G~~~~~ 217 (709)
.++.+|..+++++|+. .+...|| +|+|+++|+.+++. +.|++..++. .++..+ . .|.....
T Consensus 85 e~l~~iF~~f~~tsk~~----~~~~~gg-~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~ 159 (471)
T 1mu5_A 85 QEVPNAFGRVLYSSKYV----NRQTRGM-YGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVER 159 (471)
T ss_dssp GGHHHHHHCCCCC-CCC----CSCCSCS-CTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEE
T ss_pred HHHHHHhcccccccccc----cccCCCC-ceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCccccc
Confidence 2345788888888873 2244455 99999999999998 8898887643 333332 2 2222221
Q ss_pred eeeeccCCCCCCCCCeEEEEEcCcccccccccCCH-HHHHHHHHHHhhcCCCcEEEEeecCCC--------CC--cCcce
Q 005193 218 LTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDH-NTIAGRIRELAFLNPKLTIALRKEDSD--------PE--KNQYN 286 (709)
Q Consensus 218 l~~~~~~~~~~~~~GT~V~F~PD~~iF~~~~~fd~-~~l~~Rl~elA~LnpGL~I~l~der~~--------~~--~~~~e 286 (709)
.+. ......+||+|+++ |..+ ..+. +.|.++++++|++||+++|.|.+.... .. ....+
T Consensus 160 ~~~----~~~~~~~GT~V~v~-----l~~~-~~e~~~~I~~~l~~~al~~p~v~i~l~~~~~~~~~~~r~~~~lp~~~~~ 229 (471)
T 1mu5_A 160 GSV----ENTRGFHGTSVAIS-----IPGD-WPKAKSRIYEYIKRTYIITPYAEFIFKDPEGNVTYYPRLTNKIPKPPQE 229 (471)
T ss_dssp EEE----ECCTTCCEEEEEEE-----EECC-HHHHHHHHHHHHHHHHHHCTTCEEEEECTTCCEEEECCCCCCCCCCCCC
T ss_pred ccc----cCCCCCCCEEEEEE-----EcCC-cchHHHHHHHHHHHHHhHCCCeEEEEEECCceEEEecccccccCCccce
Confidence 111 01245689999999 4322 2334 689999999999999999999875210 00 01123
Q ss_pred eEeeccc------------------HHHHHH---------------------------------------HHhcCC----
Q 005193 287 EYFFAGG------------------LEEYVQ---------------------------------------WLNTDK---- 305 (709)
Q Consensus 287 ~f~~~~G------------------l~dyv~---------------------------------------~l~~~~---- 305 (709)
.+++++| +..|+. .+-+-+
T Consensus 230 ~~p~~~G~~l~~~~~~~~~~~~~~~~~~fl~~~f~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 309 (471)
T 1mu5_A 230 VKPHPYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKYEDFRS 309 (471)
T ss_dssp CCCCGGGCCHHHHHHHSTTCSSCCBHHHHHTTSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHHCCCCCC
T ss_pred eecCCCchhHHHHHHHHHhcCCCcchHHhhhccccccCHHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHHhccCccC
Confidence 4555554 233331 111111
Q ss_pred ------CCCCc------------e-eEEEE-----eecC--eEEEEEEEEcCCCC---CceeeeeeCceecC-CCccchH
Q 005193 306 ------KPLHD------------V-VGFRK-----DVDG--ITIDLALQWCSDAY---SDTMLGYANSIRTI-DGGTHIE 355 (709)
Q Consensus 306 ------~~l~~------------~-i~~~~-----~~~~--~~veval~~s~~~~---~~~~~SFVN~I~T~-~GGTHv~ 355 (709)
.|+.+ | +.... ...| ..||+|+.|--+.- .-.++-|+|-|++. +.|.
T Consensus 310 p~~~~lspig~~~~~~g~~~~~~~~f~~~~~r~~~~~~g~pf~ve~~~a~gg~~~~~~~~~~~r~anr~pl~~~~~~--- 386 (471)
T 1mu5_A 310 PSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKS--- 386 (471)
T ss_dssp CCSTTCCCCCHHHHHHHHHHHHCCSEEEEEECCCEEETTEEEEEEEEEEESTTSCCBSSCEEEEEETTEEECSCGGG---
T ss_pred CCccccCcCCHHHHHhhhhhccCceEEEEEecCCceecCCCEEEEEEeeccCCCCCCCCceEEEEeccCceeecCCc---
Confidence 11110 0 11111 1223 56899999973211 23799999999986 4552
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCCCHhhhccceEEEEEEeecCCCCCCccccccCC-chhhhhhhhh
Q 005193 356 GVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTRLGN-PEVRKVVDQS 424 (709)
Q Consensus 356 g~~~altr~ln~~~kk~~~~K~k~~~l~~~dIregL~~vVsvki~nP~FegQTK~kL~n-~ev~~~v~~~ 424 (709)
.++|+++... .+.+. ++++ =...+.++|++-.++--|.|-.|+.+.+ +|+...|...
T Consensus 387 ---~~~~~~~~~~-~w~~y----~~~~----~~~~~~~~v~i~st~vp~~~~~k~~i~~~~ei~~ei~~a 444 (471)
T 1mu5_A 387 ---DVIWKVVEEL-DWKRY----GIES----DQYQMVVMVHLCSTKIPYKSAGKESIAEVEDIEKEIKNA 444 (471)
T ss_dssp ---SHHHHHHHHS-CGGGG----TCCS----SCBCEEEEEEEEESSCCBSSTTCCCBCCCHHHHHHHHHH
T ss_pred ---chhhhhhccC-Chhhc----CcCC----CCCCEEEEEEeccCCCCcCCCCccccCCcHHHHHHHHHH
Confidence 5666766432 22221 0111 1136789999999999999999999886 5555444443
No 26
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.56 E-value=2.9e-14 Score=155.07 Aligned_cols=275 Identities=15% Similarity=0.183 Sum_probs=155.8
Q ss_pred ccceeccChhhHhhCCCeeeccCCCCchhHHHHHHHHhhHHhhccCCCCeEEEEEecCC----------c-cccccCCCC
Q 005193 80 EQIQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN----------S-IPIDLHPAT 148 (709)
Q Consensus 80 ~~Iq~L~glE~VrkRPgMYIGst~~~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~Dg----------s-IPvd~h~~~ 148 (709)
..|+.|+....-+.++|++|. .+.+++.|+|+||+|. + ++.|.|.+..+| . ||.+..
T Consensus 13 ~~I~~L~~~~~~~i~agevi~-----~~~~vl~eLv~NAiDA---~-a~~I~I~i~~~~~~~I~V~DnG~Gi~~~~l--- 80 (365)
T 1h7s_A 13 KAIKPIDRKSVHQICSGQVVL-----SLSTAVKELVENSLDA---G-ATNIDLKLKDYGVDLIEVSDNGCGVEEENF--- 80 (365)
T ss_dssp ----------------CEEEC-----CHHHHHHHHHHHHHHT---T-CSEEEEEEEGGGTSEEEEEECSCCCCGGGS---
T ss_pred hhhccCCHHHHHHhcCCCchh-----hHHHHHHHHHHHHHHC---C-CCEEEEEEEeCCcEEEEEEECCCCcCHHHH---
Confidence 359999999999999999974 4689999999999993 2 567888887544 2 554432
Q ss_pred CccceEEEEeeeccCCCCCCCCCcee-eccCcccccceeeeeecceeEEEEEeCCE--EEEEEcc-CCCCCcceeeeccC
Q 005193 149 NKSALETVLTVLHAGGKFGGSSSGYS-VSGGLHGVGLSVVNALSESLEVTVWRDGM--EYHQKYS-RGKPVTTLTCHVLP 224 (709)
Q Consensus 149 g~~~~E~v~t~LhaGgkFd~~~~~yk-vsGGlhGvGasvvNAlS~~f~Vev~r~Gk--~y~q~f~-~G~~~~~l~~~~~~ 224 (709)
+.+|.. |+.+|+.+.++.|+ .+.|.||+|++.++++| +++|+++++|. .|++.|. +|......
T Consensus 81 -----~~~f~~-~~tsK~~~~~dl~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~~------ 147 (365)
T 1h7s_A 81 -----EGLTLK-HHTSKIQEFADLTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQKT------ 147 (365)
T ss_dssp -----GGGGC-----------CCTTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEEE------
T ss_pred -----HHHhhh-ccccccccccchhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEeec------
Confidence 223433 56667764222566 57899999999999999 99999998776 6899997 56543211
Q ss_pred CCCCCCCCeEEEEE----cCccc---ccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCCCCCcCcceeEeecc--cHH
Q 005193 225 VDSKDRQGTRIRFW----PDKQV---FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG--GLE 295 (709)
Q Consensus 225 ~~~~~~~GT~V~F~----PD~~i---F~~~~~fd~~~l~~Rl~elA~LnpGL~I~l~der~~~~~~~~e~f~~~~--Gl~ 295 (709)
.....+||+|+|+ +.|.+ |-.....+++.|..+++++|++|||+++.|.+..... .....|..++ ++.
T Consensus 148 -~~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p~v~f~l~~~~~~~--~~~~~~~~~~~~~~~ 224 (365)
T 1h7s_A 148 -PYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQG--KRQPVVCTGGSPSIK 224 (365)
T ss_dssp -ECCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTS--CEEEEEECCCCSSHH
T ss_pred -ccCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcCCceEEEEEecCCCC--cEEEEEEcCCCchHH
Confidence 1234689999997 23322 4212234567899999999999999999999876321 1234566654 788
Q ss_pred HHHHHHhcCCCCCCceeEEEE------------------eecCeEEEEEEEEcCC----CCCceeeeeeCceecCCCccc
Q 005193 296 EYVQWLNTDKKPLHDVVGFRK------------------DVDGITIDLALQWCSD----AYSDTMLGYANSIRTIDGGTH 353 (709)
Q Consensus 296 dyv~~l~~~~~~l~~~i~~~~------------------~~~~~~veval~~s~~----~~~~~~~SFVN~I~T~~GGTH 353 (709)
+.+..+....- ....+.+.. +..++.+..-+.-..- +-...++-|||+-+-..
T Consensus 225 ~~i~~i~G~~~-~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~i~~p~~~~~r~~~~~q~~fvNgR~v~~---- 299 (365)
T 1h7s_A 225 ENIGSVFGQKQ-LQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDP---- 299 (365)
T ss_dssp HHHHHHHCHHH-HHTEEECCCCCCCHHHHHHHTCCTTTTTSCCCEEEEEEECCSTTTSBSSSTTEEEEETTEEECC----
T ss_pred HHHHHhcChHh-HhceEEEeccCCcccccccccccccccccccEEEEEEEeCcccccccCCCcceEEEECCeEecC----
Confidence 88776543210 000011110 1134555533322211 11245799999977543
Q ss_pred hHHHHHHHHHHHHHHHhhcccCCCCCCCCCHhhhccceEEEEEEeecCCCCC
Q 005193 354 IEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFE 405 (709)
Q Consensus 354 v~g~~~altr~ln~~~kk~~~~K~k~~~l~~~dIregL~~vVsvki~nP~Fe 405 (709)
..|.++|++..+... . ...=.+++++.++.-.+|
T Consensus 300 -----~~l~~ai~~~y~~~~--~-----------~~~P~~~L~l~~~p~~vD 333 (365)
T 1h7s_A 300 -----AKVCRLVNEVYHMYN--R-----------HQYPFVVLNISVDSECVD 333 (365)
T ss_dssp -----HHHHHHHHHHHHTTC--T-----------TCBCCEEEEEECCGGGEE
T ss_pred -----HHHHHHHHHHHHhhC--c-----------cCCcEEEEEEEeChHHcc
Confidence 346666655443321 1 034468888888754554
No 27
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=95.78 E-value=0.0096 Score=60.53 Aligned_cols=153 Identities=19% Similarity=0.229 Sum_probs=86.6
Q ss_pred hHHHHHHHHhhHHhhc------------c--CCCCeEEEEEecCCc-cccccCCCCCccceEE--EEeeeccCCC--CCC
Q 005193 108 HHLVYEILDNAVDEAQ------------A--GYASNIEVALLADNS-IPIDLHPATNKSALET--VLTVLHAGGK--FGG 168 (709)
Q Consensus 108 ~hlv~EIldNavDe~~------------~--g~~~~I~V~i~~Dgs-IPvd~h~~~g~~~~E~--v~t~LhaGgk--Fd~ 168 (709)
...+.|+|.||+|-.. . ...-.|.|.++.++. |-|.. ...|++.-++ .|+...++++ |.+
T Consensus 49 ~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~~i~I~D-nG~GMs~edl~~~~~~ia~S~~~~f~~ 127 (235)
T 2ior_A 49 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISD-NGVGMTRDEVIDHLGTIAKSGTKSFLE 127 (235)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEE-CSSCCCHHHHHHHHTTCCCTTHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCceEEEEEE-CCCCCCHHHHHHHHHHHccccccchhh
Confidence 5689999999999652 0 222457777766554 33322 2445543332 3433333332 210
Q ss_pred C-C---CceeeccCcccccceeeeeecceeEEEEEeCCE----EEEEEccCCCCCcceeeeccCCCCCCCCCeEEEEEcC
Q 005193 169 S-S---SGYSVSGGLHGVGLSVVNALSESLEVTVWRDGM----EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPD 240 (709)
Q Consensus 169 ~-~---~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~Gk----~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD 240 (709)
. . ..-...-|..|+|...+=++++.++|.++..+. .|...+..+... .+... .....||+|+....
T Consensus 128 ~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~-~i~~~-----~~~~~GT~V~v~Lk 201 (235)
T 2ior_A 128 SLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TVADI-----TKEDRGTEITLHLR 201 (235)
T ss_dssp HCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEE-EEEEE-----CCCSCEEEEEEEEC
T ss_pred hhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcE-EEeeC-----CCCCCCEEEEEEEc
Confidence 0 0 001234588999998778889999999987653 466655543221 11111 23468999887532
Q ss_pred c--ccccccccCCHHHHHHHHHHHh-hcCCCcEEEEe
Q 005193 241 K--QVFTTAIQFDHNTIAGRIRELA-FLNPKLTIALR 274 (709)
Q Consensus 241 ~--~iF~~~~~fd~~~l~~Rl~elA-~LnpGL~I~l~ 274 (709)
. .-| ++...|.+-++..| ||. .-|+++
T Consensus 202 ~~~~~~-----~e~~~i~~lv~~ya~~l~--~PI~~~ 231 (235)
T 2ior_A 202 EGEDEF-----LDDWRVRSIISKYSDHIA--LPVEIE 231 (235)
T ss_dssp TTCGGG-----GCHHHHHHHHHHHTTSCC--SCEEEC
T ss_pred Cchhhh-----CCHHHHHHHHHHHhccCC--CCeEec
Confidence 2 222 46778888888888 332 235554
No 28
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=94.76 E-value=0.069 Score=53.49 Aligned_cols=161 Identities=18% Similarity=0.226 Sum_probs=86.9
Q ss_pred hHHHHHHHHhhHHhhcc------------CCCC--eEEEEEecCCc-cccccCCCCCccceEE--EEeee-ccCCC-C--
Q 005193 108 HHLVYEILDNAVDEAQA------------GYAS--NIEVALLADNS-IPIDLHPATNKSALET--VLTVL-HAGGK-F-- 166 (709)
Q Consensus 108 ~hlv~EIldNavDe~~~------------g~~~--~I~V~i~~Dgs-IPvd~h~~~g~~~~E~--v~t~L-haGgk-F-- 166 (709)
...+.|+|.||+|-... +... .|.|.++.+.. |-|.. ...|++.-++ .|+.+ .+|.+ |
T Consensus 28 ~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~D-nG~GMs~edl~~~l~~ia~S~~~~f~~ 106 (220)
T 2wer_A 28 EIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRD-SGIGMTKAELINNLGTIAKSGTKAFME 106 (220)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEE-CSCCCCHHHHHHHTTTSCCTTHHHHHH
T ss_pred hHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEE-cCCCCCHHHHHHHHHhHhcccchhHHH
Confidence 57999999999996542 1122 35555543322 32221 2344443222 22222 22221 1
Q ss_pred --CCCCCceeeccCcccccceeeeeecceeEEEEEeCC-EEEEEEccCCCCCcceeeeccCCCCCCCCCeEEEEEcCccc
Q 005193 167 --GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 243 (709)
Q Consensus 167 --d~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~G-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~i 243 (709)
... .-...-|..|+|...+-+++++++|.++..+ .-|..++..|... .+... +......+||+|+.......
T Consensus 107 k~~~~--~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~-~i~~~--~~~~~~~~GT~I~l~Lk~~~ 181 (220)
T 2wer_A 107 ALSAG--ADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSF-TVTLD--EVNERIGRGTILRLFLKDDQ 181 (220)
T ss_dssp HHTTT--CCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEE-EEEEC--SSSCCCSSEEEEEEEECTTC
T ss_pred Hhhcc--CCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCce-Eeecc--cCCCCCCCCeEEEEEECcch
Confidence 111 1134568899999888888999999998654 3355555444321 11111 10124468999988733221
Q ss_pred ccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCC
Q 005193 244 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDS 278 (709)
Q Consensus 244 F~~~~~fd~~~l~~Rl~elA~LnpGL~I~l~der~ 278 (709)
..-++...|.+-++..|-.. ..-|++++++.
T Consensus 182 ---~~~~e~~~i~~~v~~~a~~l-~~PI~~~~~~~ 212 (220)
T 2wer_A 182 ---LEYLEEKRIKEVIKRHSEFV-AYPIQLVVTKE 212 (220)
T ss_dssp ---GGGGCHHHHHHHHHHHCTTC-CSCEEECCCCC
T ss_pred ---HHhCCHHHHHHHHHHHHhcC-CCceEEEeccc
Confidence 01146677888788777332 45688887653
No 29
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=94.53 E-value=0.069 Score=55.23 Aligned_cols=160 Identities=15% Similarity=0.196 Sum_probs=87.8
Q ss_pred hHHHHHHHHhhHHhhcc------------CCCCeEEEEE--ecCCc-cccccCCCCCccceEE--EEeeeccCCC--C--
Q 005193 108 HHLVYEILDNAVDEAQA------------GYASNIEVAL--LADNS-IPIDLHPATNKSALET--VLTVLHAGGK--F-- 166 (709)
Q Consensus 108 ~hlv~EIldNavDe~~~------------g~~~~I~V~i--~~Dgs-IPvd~h~~~g~~~~E~--v~t~LhaGgk--F-- 166 (709)
...+.|+|.||+|-.-. +..+.|.|.| +.+.. |-|.. ...|++.-|+ .|+.+-++++ |
T Consensus 70 ~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~D-nG~GMs~edL~~~l~~ia~S~~~~f~~ 148 (264)
T 1yc1_A 70 EIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVD-TGIGMTKADLINNLGTIAKSGTKAFME 148 (264)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEE-CSCCCCHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEE-CCcCCCHHHHHHHHHhhccccchhhhh
Confidence 57899999999996431 1124455544 33222 33322 2344443332 2333222332 1
Q ss_pred --CCCCCceeeccCcccccceeeeeecceeEEEEEeCC-EEEEEEccCCCCCcceeeeccCCCCCCCCCeEEEEEcCccc
Q 005193 167 --GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 243 (709)
Q Consensus 167 --d~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~G-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~i 243 (709)
... .-...-|..|+|...+-+++++++|.++..+ .-|..+...|... .+.. .+ .....+||+|+.......
T Consensus 149 ~l~~~--~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~-~i~~--~~-~~~~~~GT~I~l~Lk~~~ 222 (264)
T 1yc1_A 149 ALQAG--ADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF-TVRT--DT-GEPMGRGTKVILHLKEDQ 222 (264)
T ss_dssp HHHTT--CCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEE-EEEE--CC-SSCCSSEEEEEEEECGGG
T ss_pred hhccc--cchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceE-EEee--cC-CCCCCCCeEEEEEECCch
Confidence 001 1134568899999988889999999998654 2344444433221 1111 11 223568999998742221
Q ss_pred ccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCC
Q 005193 244 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDS 278 (709)
Q Consensus 244 F~~~~~fd~~~l~~Rl~elA~LnpGL~I~l~der~ 278 (709)
..-++...|..-++..|-.. ..-|++++++.
T Consensus 223 ---~e~~e~~~i~~lv~k~s~fi-~~PI~~~~~~~ 253 (264)
T 1yc1_A 223 ---TEYLEERRIKEIVKKHSQFI-GYPITLFVEKE 253 (264)
T ss_dssp ---GGGGSHHHHHHHHHHHTTTC-SSCEEECCCC-
T ss_pred ---hhhhhHHHHHHHHHHHHhhC-CCCEEEeeccc
Confidence 01146677888888887433 36789988763
No 30
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=94.48 E-value=0.099 Score=53.08 Aligned_cols=163 Identities=14% Similarity=0.177 Sum_probs=87.8
Q ss_pred hhHHHHHHHHhhHHhhcc--------------CCCCeEEEEEecCCc-cccccCCCCCccceEE--EE-eeeccCCC-C-
Q 005193 107 LHHLVYEILDNAVDEAQA--------------GYASNIEVALLADNS-IPIDLHPATNKSALET--VL-TVLHAGGK-F- 166 (709)
Q Consensus 107 L~hlv~EIldNavDe~~~--------------g~~~~I~V~i~~Dgs-IPvd~h~~~g~~~~E~--v~-t~LhaGgk-F- 166 (709)
-...+.|+|.||+|-.-. +....|.|.++.++. |-|.. ...|++.-|+ .| ++.++|.+ |
T Consensus 33 ~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~D-nG~GMt~edl~~~l~~ia~Sg~~~f~ 111 (236)
T 2gqp_A 33 KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTD-TGVGMTREELVKNLGTIAKSGTSEFL 111 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEE-CSCCCCHHHHHHHHHCC---------
T ss_pred chHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEE-CCcCCCHHHHHHHHhhhcccccHhHH
Confidence 367899999999996431 122457777766544 33322 2344443332 22 33333332 2
Q ss_pred ---CCCC---CceeeccCcccccceeeeeecceeEEEEEeCC-EEEEEEccCCCCCcceeeeccCCCCCCCCCeEEEEEc
Q 005193 167 ---GGSS---SGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWP 239 (709)
Q Consensus 167 ---d~~~---~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~G-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~P 239 (709)
.... ..-...-|.-|+|...+=.++++++|.++..+ .-|..+...|.. .+... +.+....+||+|+...
T Consensus 112 ~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~gg~~--~i~~~--~~~~~~~~GT~I~l~L 187 (236)
T 2gqp_A 112 NKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEF--SVIAD--PRGNTLGRGTTITLVL 187 (236)
T ss_dssp ------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEESSSCE--EEEEC--TTCSCSSSEEEEEEEE
T ss_pred HHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEeCCEE--EEEec--cCCCCCCCCeEEEEEE
Confidence 1000 01123458899999888888999999998743 234433332211 22111 1112346899998874
Q ss_pred CcccccccccCCHHHHHHHHHHHhhcCCCcEEEEeecCC
Q 005193 240 DKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDS 278 (709)
Q Consensus 240 D~~iF~~~~~fd~~~l~~Rl~elA~LnpGL~I~l~der~ 278 (709)
.... ..-++...|++-++..|-.. ...|++++++.
T Consensus 188 k~~~---~~~le~~~i~~lv~~~s~~i-~~pI~~~~~~~ 222 (236)
T 2gqp_A 188 KEEA---SDYLELDTIKNLVKKYSQFI-NFPIYVWSSKT 222 (236)
T ss_dssp CGGG---GGGGCHHHHHHHHHHHHTTC-SSCEEEEEECC
T ss_pred CCcc---hhhChHHHHHHHHHHHhhhC-CCceEEeeeec
Confidence 3321 11136777888888887433 36788888764
No 31
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=94.27 E-value=0.09 Score=53.19 Aligned_cols=159 Identities=16% Similarity=0.226 Sum_probs=87.7
Q ss_pred hHHHHHHHHhhHHhhcc-------C-------CCCeEEEEEecCCc-cccccCCCCCccceEE--EEeeeccCCC--CCC
Q 005193 108 HHLVYEILDNAVDEAQA-------G-------YASNIEVALLADNS-IPIDLHPATNKSALET--VLTVLHAGGK--FGG 168 (709)
Q Consensus 108 ~hlv~EIldNavDe~~~-------g-------~~~~I~V~i~~Dgs-IPvd~h~~~g~~~~E~--v~t~LhaGgk--Fd~ 168 (709)
...+.|+|.||+|-... + ..-.|.|..+.+.. |-|.. ...|++.-++ .|+...++++ |.+
T Consensus 34 ~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~D-nG~GMs~edl~~~l~~ia~S~~~~f~~ 112 (228)
T 3t0h_A 34 EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVD-TGIGMTKADLINNLGTIAKSGTKAFME 112 (228)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEE-CSCCCCHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEe-CCCCCCHHHHHHHHHhhccccchhhhh
Confidence 67899999999996532 1 11245555544322 33321 2334443222 2333323322 211
Q ss_pred C--CCceeeccCcccccceeeeeecceeEEEEEeCC-EEEEEEccCCCCCcceeeeccCCCCCCCCCeEEEEEcCccccc
Q 005193 169 S--SSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 245 (709)
Q Consensus 169 ~--~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~G-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~ 245 (709)
+ +..-..+-|.-|+|..-+=++|++++|.++.++ .-|..++..|... .+... + ......||+|+-..-..-
T Consensus 113 ~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~~-~v~~~--~-~~~~~~GT~I~v~Lk~~~-- 186 (228)
T 3t0h_A 113 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF-TVRTD--T-GEPMGRGTKVILHLKEDQ-- 186 (228)
T ss_dssp HHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEE-EEEEC--C-SSCCSSEEEEEEEECGGG--
T ss_pred hhcccCCcccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCceE-EEeec--C-CCCCCCCcEEEEEECCch--
Confidence 0 001134679999999999889999999998754 4566666655432 11111 1 224578999988733221
Q ss_pred ccccCCHHHHHHHHHHHh-hc-CCCcEEEEeecC
Q 005193 246 TAIQFDHNTIAGRIRELA-FL-NPKLTIALRKED 277 (709)
Q Consensus 246 ~~~~fd~~~l~~Rl~elA-~L-npGL~I~l~der 277 (709)
+.-.+...|+.-++..| || +| |+++.++
T Consensus 187 -~E~~e~~~i~~iv~~~a~~l~~P---i~~~~~~ 216 (228)
T 3t0h_A 187 -TEYLEERRIKEIVKKHSQFIGYP---ITLFVEK 216 (228)
T ss_dssp -GGGGSHHHHHHHHHHHSTTCSSC---EEECCC-
T ss_pred -hhhhhHHHHHHHHHHHHhhCCCC---eEEeecc
Confidence 01134567788888888 33 44 7776544
No 32
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=93.64 E-value=0.1 Score=53.75 Aligned_cols=159 Identities=17% Similarity=0.243 Sum_probs=87.8
Q ss_pred hHHHHHHHHhhHHhhcc--------------CCCCeEEEEEecCCc-cccccCCCCCccceEE--EEeeeccCCC--CCC
Q 005193 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLADNS-IPIDLHPATNKSALET--VLTVLHAGGK--FGG 168 (709)
Q Consensus 108 ~hlv~EIldNavDe~~~--------------g~~~~I~V~i~~Dgs-IPvd~h~~~g~~~~E~--v~t~LhaGgk--Fd~ 168 (709)
...+.|+|.||.|-.-. +..-.|.|..+.+.. |-|.. ...|++.-++ .|+..-++++ |.+
T Consensus 62 ~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~D-nG~GMt~edl~~~l~~ia~S~~~~f~~ 140 (256)
T 3o0i_A 62 EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVD-TGIGMTKADLINNLGTIAKSGTKAFME 140 (256)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEE-CSCCCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEec-CCCCcCHHHHHHHHHhhccccccchhh
Confidence 57899999999996432 112245555554332 33321 2334443332 2222222222 211
Q ss_pred C--CCceeeccCcccccceeeeeecceeEEEEEeCC-EEEEEEccCCCCCcceeeeccCCCCCCCCCeEEEEEcCccccc
Q 005193 169 S--SSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFT 245 (709)
Q Consensus 169 ~--~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~G-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~iF~ 245 (709)
+ ...-..+-|.-|+|..-+=++|++++|.++.++ .-|..+...|... .+... + +.....||+|+-..-..
T Consensus 141 ~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~~~g~~w~s~gg~~~-~v~~~--~-~~~~~~GT~I~l~LK~~--- 213 (256)
T 3o0i_A 141 ALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSF-TVRTD--T-GEPMGRGTKVILHLKED--- 213 (256)
T ss_dssp HHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEE-EEEEC--C-SSCCSSEEEEEEEECGG---
T ss_pred hhcccCCccccCCCcchHHHhhccCCeEEEEEcCCCCceEEEEEeccceE-EEeeC--C-CCCCCCCcEEEEEEcCc---
Confidence 0 001135679999999999899999999998644 4566666555432 11111 1 22457899998883221
Q ss_pred ccccCCHHHHHHHHHHHh-hc-CCCcEEEEeecC
Q 005193 246 TAIQFDHNTIAGRIRELA-FL-NPKLTIALRKED 277 (709)
Q Consensus 246 ~~~~fd~~~l~~Rl~elA-~L-npGL~I~l~der 277 (709)
...-.+...|+.-++..| || +| |++..++
T Consensus 214 ~~e~~e~~~I~~iv~k~s~~l~~P---I~~~~~~ 244 (256)
T 3o0i_A 214 QTEYLEERRIKEIVKKHSQFIGYP---ITLFVEK 244 (256)
T ss_dssp GGGGGCHHHHHHHHHHHCTTCSSC---EEECCC-
T ss_pred chhhccHHHHHHHHHHHHhhCCCC---eEEeeee
Confidence 111235667888888888 44 44 6666544
No 33
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=92.91 E-value=0.29 Score=50.98 Aligned_cols=158 Identities=18% Similarity=0.288 Sum_probs=89.8
Q ss_pred hHHHHHHHHhhHHhhcc--------------CCCCeEEEEEecCCc-cccccCCCCCccceEEE--Eeee-ccCCC-C--
Q 005193 108 HHLVYEILDNAVDEAQA--------------GYASNIEVALLADNS-IPIDLHPATNKSALETV--LTVL-HAGGK-F-- 166 (709)
Q Consensus 108 ~hlv~EIldNavDe~~~--------------g~~~~I~V~i~~Dgs-IPvd~h~~~g~~~~E~v--~t~L-haGgk-F-- 166 (709)
...+.|+|.||.|-.-. +..-.|.|.++.++. |-|. ...-|++.-+++ |+.+ .+|.+ |
T Consensus 48 ~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~-DNGiGMt~edL~~~LgtIa~Sgtk~f~e 126 (281)
T 3peh_A 48 EVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSIT-DTGIGMTKVDLINNLGTIAKSGTSNFLE 126 (281)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEE-ECSCCCCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEE-eCCCCCCHHHHHHHHHHHHhHhhhhHHH
Confidence 56789999999996531 122457777776554 3332 123455433322 3333 33322 1
Q ss_pred -----CCCCCceeeccCcccccceeeeeecceeEEEEEeCC-EEEEEEccCCCCCcceeeeccCCCCCCCCCeEEEEEcC
Q 005193 167 -----GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPD 240 (709)
Q Consensus 167 -----d~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~G-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD 240 (709)
+.+ .-.-|.-|||..-+=.++++++|.++.++ ..|..+...|.. -.+.. .+.+....+||+|+....
T Consensus 127 ~l~~~~~d----~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~g~-fti~~--~~~~~~~~~GT~I~L~Lk 199 (281)
T 3peh_A 127 AISKSGGD----MSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTADAK-FTIYK--DPRGATLKRGTRISLHLK 199 (281)
T ss_dssp HHHHTTCC----STTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETTSC-EEEEE--CTTCSTTSSEEEEEEEEC
T ss_pred hhhccccc----cccccccCccchhhccccCEEEEEEecCCCCEEEEEECCCcc-EEEEE--cCCCCCCCCCeEEEEEEC
Confidence 111 23569999999888888999999998754 334444433322 11211 111334578999988865
Q ss_pred cccccccccCCHHHHHHHHHHHh-hcCCCcEEEEeecCC
Q 005193 241 KQVFTTAIQFDHNTIAGRIRELA-FLNPKLTIALRKEDS 278 (709)
Q Consensus 241 ~~iF~~~~~fd~~~l~~Rl~elA-~LnpGL~I~l~der~ 278 (709)
..-- .-++...|+.-++..+ |+ +..|+|..++.
T Consensus 200 ed~~---e~le~~~ik~ivkkys~fi--~~pI~l~~~k~ 233 (281)
T 3peh_A 200 EDAT---NLLNDKKLMDLISKYSQFI--QFPIYLLHENV 233 (281)
T ss_dssp GGGG---GGGSHHHHHHHHHHHTTTC--CSCEEEEEEEE
T ss_pred Cchh---hhcCHHHHHHHHHHhhccC--CcceEEeeeee
Confidence 4321 1245566666666555 33 46678777653
No 34
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=92.71 E-value=0.52 Score=54.34 Aligned_cols=153 Identities=19% Similarity=0.228 Sum_probs=84.4
Q ss_pred hHHHHHHHHhhHHhhc-------c-------CCCCeEEEEEecCCc-cccccCCCCCccceEEE--EeeeccCCC--C--
Q 005193 108 HHLVYEILDNAVDEAQ-------A-------GYASNIEVALLADNS-IPIDLHPATNKSALETV--LTVLHAGGK--F-- 166 (709)
Q Consensus 108 ~hlv~EIldNavDe~~-------~-------g~~~~I~V~i~~Dgs-IPvd~h~~~g~~~~E~v--~t~LhaGgk--F-- 166 (709)
...+.|+|.||+|-.- . .....|.|.+++++. |-|.. ...|++.-|++ |+..-++|+ |
T Consensus 29 ~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~D-nGiGMt~edl~~~l~tiA~Sg~~~f~~ 107 (624)
T 2ioq_A 29 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISD-NGVGMTRDEVIDHLGTIAKSGTKSFLE 107 (624)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEE-CSCCCCHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCcEEEEEE-CCCCCCHHHHHHHHHhhcccccHHHHH
Confidence 5689999999999751 1 112468888877655 43322 24455433321 232222222 2
Q ss_pred --CCCCCceeeccCcccccceeeeeecceeEEEEEeCC----EEEEEEccCCCCCcceeeeccCCCCCCCCCeEEEEEcC
Q 005193 167 --GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG----MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPD 240 (709)
Q Consensus 167 --d~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~G----k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD 240 (709)
.+....-...-|.-|+|..-+=+++++++|.++..| ..|..+...|.. -.+... ....+||+|+....
T Consensus 108 ~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~-~~i~~~-----~~~~~GT~I~L~Lk 181 (624)
T 2ioq_A 108 SLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE-YTVADI-----TKEDRGTEITLHLR 181 (624)
T ss_dssp -------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSC-CEEEEE-----CCSSSEEEEEEEEC
T ss_pred HhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCe-EEEEEC-----CCCCCCeEEEEEEc
Confidence 110001123568899999888888999999998765 235544443322 222111 23468999988743
Q ss_pred cccccccccCCHHHHHHHHHHHh-h-cCCCcEE
Q 005193 241 KQVFTTAIQFDHNTIAGRIRELA-F-LNPKLTI 271 (709)
Q Consensus 241 ~~iF~~~~~fd~~~l~~Rl~elA-~-LnpGL~I 271 (709)
.+. ..-++...|+.-++..| | -+| +.+
T Consensus 182 ~d~---~Efl~~~~i~~ivkkys~fi~~P-I~~ 210 (624)
T 2ioq_A 182 EGE---DEFLDDWRVRSIISKYSDHIALP-VEI 210 (624)
T ss_dssp TTC---GGGGCHHHHHHHHHHHHTTCSSC-EEE
T ss_pred chh---hhcchHHHHHHHHHHHhccCCCc-eEE
Confidence 321 11235667777777777 3 457 444
No 35
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=92.12 E-value=0.42 Score=54.39 Aligned_cols=153 Identities=20% Similarity=0.217 Sum_probs=86.2
Q ss_pred hHHHHHHHHhhHHhhc-------------c-CCCCeEEEEEecCCc-cccccCCCCCccceEE---EEeeeccCCC-C--
Q 005193 108 HHLVYEILDNAVDEAQ-------------A-GYASNIEVALLADNS-IPIDLHPATNKSALET---VLTVLHAGGK-F-- 166 (709)
Q Consensus 108 ~hlv~EIldNavDe~~-------------~-g~~~~I~V~i~~Dgs-IPvd~h~~~g~~~~E~---v~t~LhaGgk-F-- 166 (709)
...+.|+|.||+|-.- . .....|.|.+++++. |-|.. ...|++.-|+ +.++..+|.+ |
T Consensus 29 ~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~D-nGiGMt~edl~~~l~tiA~Sg~~~f~e 107 (559)
T 1y4s_A 29 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISD-NGVGMTRDEVIDHLGTIAKSGTKSFLE 107 (559)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEE-CSSCCCHHHHHHHHSCCSCCCCCCTTC
T ss_pred HHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCcEEEEEE-CCCCCCHHHHHHHHhhhcccccHHHHH
Confidence 5689999999999651 0 123478888887665 43322 2445554332 2233333322 2
Q ss_pred --CCCCCceeeccCcccccceeeeeecceeEEEEEeCC----EEEEEEccCCCCCcceeeeccCCCCCCCCCeEEEEEcC
Q 005193 167 --GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG----MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPD 240 (709)
Q Consensus 167 --d~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~G----k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD 240 (709)
.+....-...-|.-|+|..-+=+++++++|.++..| ..|..+...|.. -.+.. .....+||+|+....
T Consensus 108 ~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~-~~i~~-----~~~~~~GT~I~L~Lk 181 (559)
T 1y4s_A 108 SLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE-YTVAD-----ITKEDRGTEITLHLR 181 (559)
T ss_dssp C--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSE-EEEEE-----ECCCSCEEEEEEEEC
T ss_pred HhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCe-eEEeE-----CCCCCCCeEEEEEEc
Confidence 110001123568999998777788899999998765 245544443322 12211 123468999988743
Q ss_pred cccccccccCCHHHHHHHHHHHh-h-cCCCcEE
Q 005193 241 KQVFTTAIQFDHNTIAGRIRELA-F-LNPKLTI 271 (709)
Q Consensus 241 ~~iF~~~~~fd~~~l~~Rl~elA-~-LnpGL~I 271 (709)
... ..-++...|+.-++..| | -+| +.+
T Consensus 182 ~d~---~Efle~~~I~~iv~kys~fi~~P-I~~ 210 (559)
T 1y4s_A 182 EGE---DEFLDDWRVRSIISKYSDHIALP-VEI 210 (559)
T ss_dssp TTC---GGGSCHHHHHHHHHHHHTTCSSC-EEE
T ss_pred chh---hhcchHHHHHHHHHHHhccCCCc-eEE
Confidence 321 11235677777778778 3 457 444
No 36
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=90.64 E-value=0.34 Score=49.32 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=87.2
Q ss_pred hHHHHHHHHhhHHhhcc-------C-------CCCeEEEEEecCCc-cccccCCCCCccceEE---EEeeeccCCC-C--
Q 005193 108 HHLVYEILDNAVDEAQA-------G-------YASNIEVALLADNS-IPIDLHPATNKSALET---VLTVLHAGGK-F-- 166 (709)
Q Consensus 108 ~hlv~EIldNavDe~~~-------g-------~~~~I~V~i~~Dgs-IPvd~h~~~g~~~~E~---v~t~LhaGgk-F-- 166 (709)
...+.|+|.||.|-... + ..-.|.|..+.++. |-|.. ..-|++.-|+ +.+..++|.+ |
T Consensus 41 ~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~D-nGiGMt~edL~~~LgtIA~Sgtk~f~e 119 (239)
T 3nmq_A 41 EIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVD-TGIGMTKADLINNLGTIAKSGTKAFME 119 (239)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEE-CSCCCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEe-CCCCCCHHHHHHHHHHHhcccchhhhh
Confidence 67899999999996431 1 12357777776544 33321 2334432222 2222233322 2
Q ss_pred --CCCCCceeeccCcccccceeeeeecceeEEEEEeCC-EEEEEEccCCCCCcceeeeccCCCCCCCCCeEEEEEcCccc
Q 005193 167 --GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 243 (709)
Q Consensus 167 --d~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~G-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~i 243 (709)
..+ .-.-.-|.-|||..-+=.++++++|.+++++ ..|..+...| ..-.+... + +....+||+|+-.....-
T Consensus 120 ~~~~~--~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~-g~fti~~~--~-~~~~~~GT~I~L~lk~d~ 193 (239)
T 3nmq_A 120 ALQAG--ADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAG-GSFTVRAD--H-GEPIGRGTKVILHLKEDQ 193 (239)
T ss_dssp HHHTT--CCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECST-TEEEEEEC--C-SSCCSSEEEEEEEECGGG
T ss_pred hhccc--CCcccccccCcccccccccCCEEEEEEeeCCCceeEEEECCC-CcEEEEec--C-CCcCCCCCEEEEEECCCh
Confidence 011 1134679999999998888999999998743 3454443322 21112111 1 234578999988755431
Q ss_pred ccccccCCHHHHHHHHHHHh-hcCCCcEEEEeecCC
Q 005193 244 FTTAIQFDHNTIAGRIRELA-FLNPKLTIALRKEDS 278 (709)
Q Consensus 244 F~~~~~fd~~~l~~Rl~elA-~LnpGL~I~l~der~ 278 (709)
- .-++...|+.-++..+ |+ +.-|++.-++.
T Consensus 194 ~---e~l~~~~i~~lv~kys~fi--~~pI~~~~~~~ 224 (239)
T 3nmq_A 194 T---EYLEERRVKEVVKKHSQFI--GYPITLYLEKE 224 (239)
T ss_dssp G---GGGSHHHHHHHHHHHCTTC--SSCEEECCCSC
T ss_pred H---HhcCHHHHHHHHHHHHhcc--CCceEEeeeee
Confidence 1 1134555655555544 33 46788877664
No 37
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=90.39 E-value=0.31 Score=50.46 Aligned_cols=161 Identities=14% Similarity=0.200 Sum_probs=84.4
Q ss_pred hHHHHHHHHhhHHhhc--------------cCCCCeEEEEEecCCc-cccccCCCCCccceEE---EEeeeccCCC-CCC
Q 005193 108 HHLVYEILDNAVDEAQ--------------AGYASNIEVALLADNS-IPIDLHPATNKSALET---VLTVLHAGGK-FGG 168 (709)
Q Consensus 108 ~hlv~EIldNavDe~~--------------~g~~~~I~V~i~~Dgs-IPvd~h~~~g~~~~E~---v~t~LhaGgk-Fd~ 168 (709)
...+.|+|.||+|-.- .+..-.|.|.++.++. |-|.. ...|++.-++ +.+..++|.+ |-.
T Consensus 30 eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~D-nGiGMt~edl~~~l~tia~Sgtk~F~~ 108 (269)
T 1qy5_A 30 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTD-TGVGMTREELVKNLGTIAKSGTSEFLN 108 (269)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEE-CSCCCCHHHHHHHHHSCCSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEE-CCCCCCHHHHHHHhhhhcccccHHHHH
Confidence 4589999999999642 0122356666665443 33321 2345543332 2333344433 200
Q ss_pred ----C---CCceeeccCcccccceeeeeecceeEEEEEeCC-EEEEEEccCCCCCcceeeeccCCCCCCCCCeEEEEEcC
Q 005193 169 ----S---SSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPD 240 (709)
Q Consensus 169 ----~---~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~G-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD 240 (709)
. ...-...-|..|||...+=.++..++|.++..+ ..|......|.. .+... +.+....+||+|+....
T Consensus 109 kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~gg~~--~i~~~--~~~~~~~~GT~I~L~Lk 184 (269)
T 1qy5_A 109 KMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEF--SVIAD--PRGNTLGRGTTITLVLK 184 (269)
T ss_dssp HHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSCE--EEEEC--TTCSCSSSEEEEEEEEC
T ss_pred hhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeCCEE--EEEec--cCCCcCCCCeEEEEEEc
Confidence 0 000122348899999888888999999998753 233333322211 11111 11223468999887643
Q ss_pred cccccccccCCHHHHHHHHHHHh-hcCCCcEEEEeecCC
Q 005193 241 KQVFTTAIQFDHNTIAGRIRELA-FLNPKLTIALRKEDS 278 (709)
Q Consensus 241 ~~iF~~~~~fd~~~l~~Rl~elA-~LnpGL~I~l~der~ 278 (709)
..- ..-++...|+.-++..+ |+ +.-|+|+.++.
T Consensus 185 ~d~---~e~le~~~i~~lvkkys~fi--~~PI~l~~~k~ 218 (269)
T 1qy5_A 185 EEA---SDYLELDTIKNLVKKYSQFI--NFPIYVWSSKT 218 (269)
T ss_dssp GGG---GGGGSHHHHHHHHHTTCTTC--SSCEEEEEECC
T ss_pred ccc---hhhhhHHHHHHHHHhhhccc--ceeeEEeeeee
Confidence 321 11135555555555555 33 46688877653
No 38
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=87.58 E-value=0.29 Score=44.52 Aligned_cols=94 Identities=11% Similarity=0.153 Sum_probs=49.7
Q ss_pred CchhHHHHHHHHhhHHhhccCC-CCeEEEEEecCCc---cccccCCCCCccceEEEEeeeccCCCCCCCCCceeeccCcc
Q 005193 105 RGLHHLVYEILDNAVDEAQAGY-ASNIEVALLADNS---IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLH 180 (709)
Q Consensus 105 ~GL~hlv~EIldNavDe~~~g~-~~~I~V~i~~Dgs---IPvd~h~~~g~~~~E~v~t~LhaGgkFd~~~~~ykvsGGlh 180 (709)
.-+..++.|+|+||+..+..+. ...|.|.+..++. |-|.. ...|.+..+-+|. .|... +-..+-+
T Consensus 38 ~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~~~~i~V~D-~G~g~~~~~~~~~------~~~~~----~~~~~~~ 106 (145)
T 1th8_A 38 TEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRD-EGVGIPDIEEARQ------PLFTT----KPELERS 106 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEE-CSSCCSCHHHHTC------CC-----------CCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCCEEEEEEEE-CCCCcChHHHhhc------ccccC----CCCCCCC
Confidence 4567889999999998876532 3567776654322 22221 1122221111221 11111 0122347
Q ss_pred cccceeeeeecceeEEEEEe-CCEEEEEEc
Q 005193 181 GVGLSVVNALSESLEVTVWR-DGMEYHQKY 209 (709)
Q Consensus 181 GvGasvvNAlS~~f~Vev~r-~Gk~y~q~f 209 (709)
|+|+.++..+.+.+.++... .|..++..|
T Consensus 107 GlGL~iv~~~~~~i~~~~~~~~Gt~v~~~l 136 (145)
T 1th8_A 107 GMGFTIMENFMDEVIVESEVNKGTTVYLKK 136 (145)
T ss_dssp SCHHHHHHHHSSEEEEEEETTTEEEEEEEE
T ss_pred cchHHHHHHHHheEEEEeCCCCCEEEEEEE
Confidence 99999999999866555443 245555555
No 39
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=87.33 E-value=1.2 Score=51.55 Aligned_cols=157 Identities=15% Similarity=0.208 Sum_probs=76.0
Q ss_pred hHHHHHHHHhhHHhhc-------c-------CCCCeEEEEEecCCc-cccccCCCCCccceEE---EEeeeccCCC-C--
Q 005193 108 HHLVYEILDNAVDEAQ-------A-------GYASNIEVALLADNS-IPIDLHPATNKSALET---VLTVLHAGGK-F-- 166 (709)
Q Consensus 108 ~hlv~EIldNavDe~~-------~-------g~~~~I~V~i~~Dgs-IPvd~h~~~g~~~~E~---v~t~LhaGgk-F-- 166 (709)
...+.|+|.||+|-.- . .....|.|.++.++. |-|.. ...|++.-|+ +.++..+|.+ |
T Consensus 47 eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~~I~I~D-nGiGMt~edl~~~l~tIA~SGtk~f~~ 125 (666)
T 2o1u_A 47 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTD-TGVGMTREELVKNLGTIAKSGTSEFLN 125 (666)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEE-CSCCCCHHHHHHHTTC-----------
T ss_pred hHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCCEEEEEE-CCCCCCHHHHHHHHhhhcccccHHHHH
Confidence 4689999999999651 1 112468887777654 33322 2345543332 2333344433 2
Q ss_pred --CCCC--C-ceeeccCcccccceeeeeecceeEEEEEeCC-EEEEEEccCCCCCcceeeeccCCCCCCCCCeEEEEEcC
Q 005193 167 --GGSS--S-GYSVSGGLHGVGLSVVNALSESLEVTVWRDG-MEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPD 240 (709)
Q Consensus 167 --d~~~--~-~ykvsGGlhGvGasvvNAlS~~f~Vev~r~G-k~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD 240 (709)
.... . .-...-|.-|||..-+=.++++++|.++..| .-|..+...|.- .+... ..+....+||+|+....
T Consensus 126 kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~gg~~--ti~~~--~~~~~~~~GT~I~L~Lk 201 (666)
T 2o1u_A 126 KMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEF--SVIAD--PRGNTLGRGTTITLVLK 201 (666)
T ss_dssp --------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESSSCC--EEEEC--TTCCSSSSEEEEEEEEC
T ss_pred HhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeCCeE--EEEec--ccCCCCCCCeEEEEEEc
Confidence 1100 0 1123458899999887778899999998754 223333322221 22111 11123478999988743
Q ss_pred cccccccccCCHHHHHHHHHHHh-hc-CCCcEEEEee
Q 005193 241 KQVFTTAIQFDHNTIAGRIRELA-FL-NPKLTIALRK 275 (709)
Q Consensus 241 ~~iF~~~~~fd~~~l~~Rl~elA-~L-npGL~I~l~d 275 (709)
... ..-++...|+.-++..| |+ +| |.|.+
T Consensus 202 ~d~---~Efle~~~I~~ivkkys~fi~~P---I~~~~ 232 (666)
T 2o1u_A 202 EEA---SDYLELDTIKNLVKKYSQFINFP---IYVWS 232 (666)
T ss_dssp TTT---TTSSSTTHHHHHHHHHSTTCCSC---EEEEE
T ss_pred cch---hhhccHHHHHHHHHHHHhhCCCc---eEEec
Confidence 321 11134566777777777 33 46 66654
No 40
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=86.06 E-value=4.8 Score=45.44 Aligned_cols=100 Identities=14% Similarity=0.256 Sum_probs=65.8
Q ss_pred eEEEEEEEEcCCCC---CceeeeeeCceecC-CCccchHHHHHHHHHHHHHHHhhcccCCCCCCCCCHhhhccceEEEEE
Q 005193 321 ITIDLALQWCSDAY---SDTMLGYANSIRTI-DGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIIS 396 (709)
Q Consensus 321 ~~veval~~s~~~~---~~~~~SFVN~I~T~-~GGTHv~g~~~altr~ln~~~kk~~~~K~k~~~l~~~dIregL~~vVs 396 (709)
..||+|+.|--+.- .-.++-|+|-|+.. +.| ..++|+++... .+.+. ++++ =...+.++|+
T Consensus 350 f~vE~~~a~gg~~~~~~~~~i~r~aNrvpl~~~~~------~~~~~~~~~~~-~w~~y----~~~~----~~~~~~~~v~ 414 (530)
T 2zbk_B 350 FIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEK------SDVIWKVVEEL-DWKRY----GIES----DQYQMVVMVH 414 (530)
T ss_dssp EEEEEEEEESTTSCCBSSCEEEEEETTEEECTTGG------GCHHHHHHHHS-CTTSS----SCCC----SSBCEEEEEE
T ss_pred EEEEEEeeccCCCCCCCCceEEEEecCCceeecCC------cchhhhhhccC-Chhhc----CcCC----CCCCEEEEEE
Confidence 56899999973211 23799999999986 455 25667766432 22221 1111 1136789999
Q ss_pred EeecCCCCCCccccccCC-chhhhhhhhhHH---HHHHHHHhh
Q 005193 397 VRVPNPEFEGQTKTRLGN-PEVRKVVDQSVQ---EYLTEYLEL 435 (709)
Q Consensus 397 vki~nP~FegQTK~kL~n-~ev~~~v~~~v~---~~l~~~le~ 435 (709)
+-.++--|.|-.|+.+.+ ||+...+...+. ..|..||.+
T Consensus 415 i~st~vp~~~~~Ke~i~~~~ei~~ei~~a~~~~~r~l~~~~~~ 457 (530)
T 2zbk_B 415 LCSTKIPYKSAGKESIAEVENIEKEIKNALMEVARKLKQYLSE 457 (530)
T ss_dssp EEESSCCBSSSSCSCBCCCHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred eccCCCCcCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 666555554443 466667754
No 41
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=85.66 E-value=1.5 Score=50.93 Aligned_cols=155 Identities=19% Similarity=0.243 Sum_probs=85.3
Q ss_pred hHHHHHHHHhhHHhhc-------c-------CCCCeEEEEEecCCc-cccccCCCCCccceEE---EEeeeccCCC-C--
Q 005193 108 HHLVYEILDNAVDEAQ-------A-------GYASNIEVALLADNS-IPIDLHPATNKSALET---VLTVLHAGGK-F-- 166 (709)
Q Consensus 108 ~hlv~EIldNavDe~~-------~-------g~~~~I~V~i~~Dgs-IPvd~h~~~g~~~~E~---v~t~LhaGgk-F-- 166 (709)
...+.|+|.||+|-.- . +....|.|.++.++. |-|.. ..-|++.-|+ +.++..+|.+ |
T Consensus 28 eifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~D-nGiGMt~edl~~~l~tIA~Sgt~~f~~ 106 (677)
T 2cg9_A 28 EIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRD-SGIGMTKAELINNLGTIAKSGTKAFME 106 (677)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEE-CSCCCCHHHHHGGGSSSSSCTTHHHHS
T ss_pred hHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEE-CCCCCCHHHHHHHHHhHhccccHHHHH
Confidence 4578999999999652 0 122468887776554 43332 2345543332 2333344432 2
Q ss_pred --CCCCCceeeccCcccccceeeeeecceeEEEEEeCCE-EEEEEccCCCCCcceeeeccCCCCCCCCCeEEEEEcCccc
Q 005193 167 --GGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGM-EYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 243 (709)
Q Consensus 167 --d~~~~~ykvsGGlhGvGasvvNAlS~~f~Vev~r~Gk-~y~q~f~~G~~~~~l~~~~~~~~~~~~~GT~V~F~PD~~i 243 (709)
... .-...-|.-|||..-+=+.+++++|.+++.|. .|......|.. -.+.. .+.+....+||+|+......-
T Consensus 107 kl~~~--~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~-~ti~~--~~~~~~~~~GT~I~L~Lk~d~ 181 (677)
T 2cg9_A 107 ALSAG--ADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGS-FTVTL--DEVNERIGRGTILRLFLKDDQ 181 (677)
T ss_dssp CCCSS--CCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSE-EEEEE--CCSSCCCSSEEEEEEEECTTG
T ss_pred hhhcc--cchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCce-EEEee--cCCCCCCCCCeEEEEEEcchh
Confidence 111 11234688899998777788999999987552 34444333321 11211 111234578999988743221
Q ss_pred ccccccCCHHHHHHHHHHHh-hcCCCcEEEE
Q 005193 244 FTTAIQFDHNTIAGRIRELA-FLNPKLTIAL 273 (709)
Q Consensus 244 F~~~~~fd~~~l~~Rl~elA-~LnpGL~I~l 273 (709)
..-++...|+.-++..| |+ +.-|++
T Consensus 182 ---~e~l~~~~i~~lvkkys~fi--~~PI~l 207 (677)
T 2cg9_A 182 ---LEYLEEKRIKEVIKRHSEFV--AYPIQL 207 (677)
T ss_dssp ---GGGGCHHHHHHHHHHHSTTC--SSCEEE
T ss_pred ---hccccHHHHHHHHHHHHhhC--CCCeEE
Confidence 11245566666666666 44 456777
No 42
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=76.01 E-value=4.2 Score=36.26 Aligned_cols=33 Identities=9% Similarity=0.240 Sum_probs=22.9
Q ss_pred CCchhHHHHHHHHhhHHhhccCCCCeEEEEEecCC
Q 005193 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLADN 138 (709)
Q Consensus 104 ~~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~Dg 138 (709)
..-|..++.++|+||+..... ...|.|.+..++
T Consensus 45 ~~~l~~il~nll~NAi~~~~~--~~~I~i~~~~~~ 77 (152)
T 3a0y_A 45 RTRIKQVLINLVQNAIEATGE--NGKIKITSEDMY 77 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--TCEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CCEEEEEEEecC
Confidence 356888999999999986633 346777665543
No 43
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=75.91 E-value=0.97 Score=39.69 Aligned_cols=62 Identities=26% Similarity=0.299 Sum_probs=35.3
Q ss_pred chhHHHHHHHHhhHHhhccCCCCeEEEEEecCCccccccCCCCCccceEEEEeeeccCCCCCCCCCceeeccCcccccce
Q 005193 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLADNSIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLS 185 (709)
Q Consensus 106 GL~hlv~EIldNavDe~~~g~~~~I~V~i~~DgsIPvd~h~~~g~~~~E~v~t~LhaGgkFd~~~~~ykvsGGlhGvGas 185 (709)
-|..++.|+|+||+..+ ....|.|++..++. +.++.--.|.-+..+ . .|+|++
T Consensus 43 ~l~~il~nll~NA~k~~---~~~~i~i~~~~~~~---------------~~i~v~D~G~gi~~~--~-------~GlGL~ 95 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHA---AASTLTVRVKVDDD---------------LCIEVTDNGRGMPDE--F-------TGSGLT 95 (129)
T ss_dssp HHHHHHHHHHHHCCCCS---SCCEEEEEEEESSE---------------EEEEEEECCCCCTTT--T-------CSHHHH
T ss_pred HHHHHHHHHHHHHHHhC---CCceEEEEEEEcCC---------------EEEEEecCCCCCCcc--c-------CCcCHH
Confidence 45566666666666654 34678887765432 112222233334333 1 689999
Q ss_pred eeeeeccee
Q 005193 186 VVNALSESL 194 (709)
Q Consensus 186 vvNAlS~~f 194 (709)
++..+.+.+
T Consensus 96 i~~~~~~~~ 104 (129)
T 3zxo_A 96 NLRQRAEQA 104 (129)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 888776654
No 44
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=71.50 E-value=3.5 Score=37.59 Aligned_cols=94 Identities=15% Similarity=0.215 Sum_probs=46.9
Q ss_pred CCCchhHHHHHHHHhhHHhhccCCCCeEEEEEecCCc---cccccCCCCCcc--ceEEEEeeeccCCCCCCCCCceeecc
Q 005193 103 GPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNS---IPIDLHPATNKS--ALETVLTVLHAGGKFGGSSSGYSVSG 177 (709)
Q Consensus 103 ~~~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~Dgs---IPvd~h~~~g~~--~~E~v~t~LhaGgkFd~~~~~ykvsG 177 (709)
+..-|..++.++|+||+... ...|.|.+..++. |-|... ..|++ ..+-+|.....+.. . ...
T Consensus 44 d~~~l~~il~nll~NAik~~----~~~I~i~~~~~~~~~~i~i~D~-G~gi~~~~~~~~f~~f~~~~~------~--~~~ 110 (161)
T 1bxd_A 44 HPLSIKRAVANMVVNAARYG----NGWIKVSSGTEPNRAWFQVEDD-GPGIAPEQRKHLFQPFVRGDS------A--RTI 110 (161)
T ss_dssp CHHHHHHHHHHHHHHHHTTC----CSCEEEEEEEETTEEEEEEEEE-SSCSCTTGGGCSSCCCCCCSC------C--CCC
T ss_pred CHHHHHHHHHHHHHHHHhhc----CCeEEEEEEEcCCEEEEEEEeC-CCCCCHHHHHHhCCCceeCCC------C--CCC
Confidence 34557888888888888765 3456666554322 222110 11111 12223333222211 1 112
Q ss_pred Ccccccceeeeeeccee----EEEEE-eCCEEEEEEc
Q 005193 178 GLHGVGLSVVNALSESL----EVTVW-RDGMEYHQKY 209 (709)
Q Consensus 178 GlhGvGasvvNAlS~~f----~Vev~-r~Gk~y~q~f 209 (709)
+-+|+|+++|..+-+.+ .++.. ..|..++..|
T Consensus 111 ~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~l 147 (161)
T 1bxd_A 111 SGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWL 147 (161)
T ss_dssp CCCSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEE
T ss_pred CCcccCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEE
Confidence 34899999998887765 33322 1345555554
No 45
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=65.52 E-value=2.5 Score=45.52 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=44.7
Q ss_pred CchhHHHHHHHHhhHHhhccCC-----CCeEEEEEecCCc---cccccCCCCCcc--ceEEEEeeeccCCCCCCCCCcee
Q 005193 105 RGLHHLVYEILDNAVDEAQAGY-----ASNIEVALLADNS---IPIDLHPATNKS--ALETVLTVLHAGGKFGGSSSGYS 174 (709)
Q Consensus 105 ~GL~hlv~EIldNavDe~~~g~-----~~~I~V~i~~Dgs---IPvd~h~~~g~~--~~E~v~t~LhaGgkFd~~~~~yk 174 (709)
.-|.+++.++|+||+.-...|. ...|.|++..++. |-|.. ...|++ ..+-||.....+.+-...++.-.
T Consensus 242 ~~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D-~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~ 320 (407)
T 2q8g_A 242 SHLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSD-RGGGVPLRKIDRLFNYMYSTAPRPRVETSRA 320 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEE-CSCCCCHHHHGGGGCTTTTCCCCCCSSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEe-cCCCCCHHHHHHHhCccccCCCCCCccccCC
Confidence 4588999999999998776654 2256666654332 22211 111221 12233443333222100000001
Q ss_pred eccCcccccceeeeeeccee
Q 005193 175 VSGGLHGVGLSVVNALSESL 194 (709)
Q Consensus 175 vsGGlhGvGasvvNAlS~~f 194 (709)
...+-.|+|+++|..+.+.+
T Consensus 321 ~~~~G~GLGL~Ivr~i~~~~ 340 (407)
T 2q8g_A 321 VPLAGFGYGLPISRLYAQYF 340 (407)
T ss_dssp CCSSCTTCHHHHHHHHHHHT
T ss_pred CCCCCcCCCHHHHHHHHHHh
Confidence 11133799999998887765
No 46
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=65.45 E-value=3.7 Score=39.03 Aligned_cols=71 Identities=27% Similarity=0.312 Sum_probs=31.9
Q ss_pred CchhHHHHHHHHhhHHhhccCCCCeEEEEEec-------CCc-cccccCCCCCccceEEEEeeeccCCCCCCCCCceeec
Q 005193 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLA-------DNS-IPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVS 176 (709)
Q Consensus 105 ~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~-------Dgs-IPvd~h~~~g~~~~E~v~t~LhaGgkFd~~~~~ykvs 176 (709)
.-|..++.++|+||+..... ...|.|.+.. ||. ||-+. .+-+|....++. . ..
T Consensus 116 ~~l~~il~nLl~NAi~~~~~--~~~i~i~~~~~~i~V~D~G~Gi~~~~--------~~~if~~f~~~~-------~--~~ 176 (222)
T 3jz3_A 116 LLLSLLVRNLLDNAVRYSPQ--GSVVDVTLNADNFIVRDNGPGVTPEA--------LARIGERFYRPP-------G--QT 176 (222)
T ss_dssp HHHHHHHHHHHHHHHHTCCT--TCEEEEEECSSEEEEECSCC--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCC--CCeEEEEEccCeEEEEECCCCCCHHH--------HHHHHhhhccCC-------C--CC
Confidence 35778888888888886533 3456666554 343 33221 223443332211 0 11
Q ss_pred cCcccccceeeeeeccee
Q 005193 177 GGLHGVGLSVVNALSESL 194 (709)
Q Consensus 177 GGlhGvGasvvNAlS~~f 194 (709)
.+-+|+|+++|.-+-+.+
T Consensus 177 ~~g~GlGL~i~~~i~~~~ 194 (222)
T 3jz3_A 177 ATGSGLGLSIVQRIAKLH 194 (222)
T ss_dssp -----CTHHHHHHHHHHT
T ss_pred CCcccccHHHHHHHHHHc
Confidence 223799999988777665
No 47
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=64.30 E-value=6 Score=35.36 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=21.9
Q ss_pred CCCchhHHHHHHHHhhHHhhccCCCCeEEEEEecC
Q 005193 103 GPRGLHHLVYEILDNAVDEAQAGYASNIEVALLAD 137 (709)
Q Consensus 103 ~~~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~D 137 (709)
+..-|..++.++|+||+..... .|.|.+..+
T Consensus 41 d~~~l~~il~nLl~NAi~~~~~----~i~i~~~~~ 71 (152)
T 1id0_A 41 EQNDFVEVMGNVLDNACKYCLE----FVEISARQT 71 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSS----EEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHhCcC----eEEEEEEec
Confidence 4556888999999999886533 666666543
No 48
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=62.29 E-value=3.3 Score=35.90 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=17.9
Q ss_pred chhHHHHHHHHhhHHhhccCCCCeEEEEEec
Q 005193 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLA 136 (709)
Q Consensus 106 GL~hlv~EIldNavDe~~~g~~~~I~V~i~~ 136 (709)
-|..++.|+|+||+..+. .+.|.|.+..
T Consensus 39 ~l~~il~nll~Na~k~~~---~~~i~i~~~~ 66 (124)
T 3zxq_A 39 HAEAVLREAVSNAVRHAN---ATSLAINVSV 66 (124)
T ss_dssp HHHHHHHHHHHHHHTCTT---CCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCC---CCEEEEEEEe
Confidence 455677777777766543 3477777754
No 49
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=60.67 E-value=9.9 Score=37.37 Aligned_cols=31 Identities=13% Similarity=0.329 Sum_probs=22.1
Q ss_pred CchhHHHHHHHHhhHHhhccCCCCeEEEEEecC
Q 005193 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLAD 137 (709)
Q Consensus 105 ~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~D 137 (709)
.-|..++.++|+||++....+ ..|.|.+..+
T Consensus 154 ~~l~~il~nLl~NA~~~~~~~--~~I~i~~~~~ 184 (268)
T 4ew8_A 154 KRLAQTLDHLVENALRQTPPG--GRVTLSARRA 184 (268)
T ss_dssp HHHHHHHHHHHHHHHHHSCTT--CEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCCCC--CEEEEEEEec
Confidence 458889999999999876543 4666666543
No 50
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=60.60 E-value=5.9 Score=35.51 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=22.2
Q ss_pred CCCchhHHHHHHHHhhHHhhccCCCCeEEEEEe
Q 005193 103 GPRGLHHLVYEILDNAVDEAQAGYASNIEVALL 135 (709)
Q Consensus 103 ~~~GL~hlv~EIldNavDe~~~g~~~~I~V~i~ 135 (709)
+..-|..++.++|+||+.....+ ...|.|.+.
T Consensus 45 d~~~l~~il~nLl~NAik~~~~~-~~~I~i~~~ 76 (160)
T 1r62_A 45 DPDQIEQVLLNIVRNALQALGPE-GGEIILRTR 76 (160)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGG-CEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhhcc-CCeEEEEEe
Confidence 34568899999999999876542 345665554
No 51
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=58.32 E-value=14 Score=39.63 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=48.5
Q ss_pred hhHHHHHHHHhhHHhhccCC-CCeEEEEEecC--CccccccCCCCCccceEEEEeeeccCCCCCCCCCceeeccCccccc
Q 005193 107 LHHLVYEILDNAVDEAQAGY-ASNIEVALLAD--NSIPIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVG 183 (709)
Q Consensus 107 L~hlv~EIldNavDe~~~g~-~~~I~V~i~~D--gsIPvd~h~~~g~~~~E~v~t~LhaGgkFd~~~~~ykvsGGlhGvG 183 (709)
+.-++.|++.||+..+.... ...|.|.+..+ +.+=+... -.|.-|+.. -..+-+|.|
T Consensus 298 ~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~---------------D~G~g~~~~-----~~~~~~G~G 357 (399)
T 3ke6_A 298 IVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVI---------------DRGQWKDHR-----DGARGRGRG 357 (399)
T ss_dssp HHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEE---------------ESCBC-----------------C
T ss_pred HHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEE---------------ECCCCCCCC-----CCCCCCCcH
Confidence 55689999999999876432 45677666543 33222211 111112111 011346899
Q ss_pred ceeeeeecceeEEEEEeCCEEEEEEcc
Q 005193 184 LSVVNALSESLEVTVWRDGMEYHQKYS 210 (709)
Q Consensus 184 asvvNAlS~~f~Vev~r~Gk~y~q~f~ 210 (709)
+.+|..|+..+.+....+|+....+|.
T Consensus 358 L~lv~~l~~~~~~~~~~~G~~v~~~~~ 384 (399)
T 3ke6_A 358 LAMAEALVSEARIMHGAGGTTATLTHR 384 (399)
T ss_dssp HHHHHTTSSEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHheeeEECCCcEEEEEEEE
Confidence 999999999998876667888777775
No 52
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=58.02 E-value=27 Score=40.17 Aligned_cols=93 Identities=14% Similarity=0.307 Sum_probs=57.3
Q ss_pred eEEEEEEEEcCCCC---CceeeeeeCceec-CCCccchHHHHHHHHHHHHHHHhhcccCCCCCCCCCHhhhc-cceEEEE
Q 005193 321 ITIDLALQWCSDAY---SDTMLGYANSIRT-IDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVR-EGLTCII 395 (709)
Q Consensus 321 ~~veval~~s~~~~---~~~~~SFVN~I~T-~~GGTHv~g~~~altr~ln~~~kk~~~~K~k~~~l~~~dIr-egL~~vV 395 (709)
..||+|++|--+.- .-.++-|+|-||- .+.|. .++|+++... .+++.. ++-.+..+- .-+.++|
T Consensus 353 fivE~~ia~gg~~~~~~~~~~~rfanrvpll~~~g~------~~~t~~~~~~-~w~~y~----~~~~~~~~p~~~~~~~v 421 (621)
T 2q2e_B 353 FVVEVGMAYGGNLPKEEKISIMRFANRVPLLYQQGG------CVTTHAVEDI-KWKQYG----LNQPGGGIPVGPVILLI 421 (621)
T ss_dssp EEEEEEEEESSSSCSSSCCCEEEEETTBCCCSCCTT------CHHHHHHHHS-CCTTTT----CCCCSSSSCCSSCCEEE
T ss_pred eEEEEeeecCCCCCCCCceeEEEEccCCceeecCCc------cHHHHHHHhC-ChhhcC----cCCCCCCCCCCCEEEEE
Confidence 46899999972211 2378999999984 45555 4566766442 222210 110001111 2467899
Q ss_pred EEeecCCCCCCccccccCC-chhhhhhhhh
Q 005193 396 SVRVPNPEFEGQTKTRLGN-PEVRKVVDQS 424 (709)
Q Consensus 396 svki~nP~FegQTK~kL~n-~ev~~~v~~~ 424 (709)
++--++--|.|--|+.+.+ ||+..-|...
T Consensus 422 ~~~st~vp~~~~~ke~ia~~~ei~~ei~~a 451 (621)
T 2q2e_B 422 HVASINVPFTSESKDAIADIPVIKEEIDLA 451 (621)
T ss_dssp EEECSSCCBSSSSSSSBCCCHHHHHHHHHH
T ss_pred EEeecCCCcCCcchhhhcCCHHHHHHHHHH
Confidence 9999999999999999985 4554444433
No 53
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=56.82 E-value=2.8 Score=38.96 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=17.7
Q ss_pred CCCchhHHHHHHHHhhHHhhccC
Q 005193 103 GPRGLHHLVYEILDNAVDEAQAG 125 (709)
Q Consensus 103 ~~~GL~hlv~EIldNavDe~~~g 125 (709)
+..-|..++.++|+||++....+
T Consensus 40 d~~~l~~il~nLl~NAi~~~~~~ 62 (177)
T 3sl2_A 40 DQDKITQVLDNIISNALKYSPEG 62 (177)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCCC
Confidence 34558899999999999876443
No 54
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=55.60 E-value=3.9 Score=43.63 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=24.4
Q ss_pred CCchhHHHHHHHHhhHHhhccCCCC------eEEEEEec
Q 005193 104 PRGLHHLVYEILDNAVDEAQAGYAS------NIEVALLA 136 (709)
Q Consensus 104 ~~GL~hlv~EIldNavDe~~~g~~~------~I~V~i~~ 136 (709)
+.-|.+++.++|+||+.-...|... .|.|++..
T Consensus 236 ~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~ 274 (388)
T 1gkz_A 236 PMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN 274 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe
Confidence 4568899999999999988776421 57666654
No 55
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=53.64 E-value=2 Score=46.11 Aligned_cols=89 Identities=15% Similarity=0.223 Sum_probs=43.6
Q ss_pred CCchhHHHHHHHHhhHHhhccCCC-----CeEEEEEecCCc---cccccCCCCCcc--ceEEEEeeeccCCCCCCCCCce
Q 005193 104 PRGLHHLVYEILDNAVDEAQAGYA-----SNIEVALLADNS---IPIDLHPATNKS--ALETVLTVLHAGGKFGGSSSGY 173 (709)
Q Consensus 104 ~~GL~hlv~EIldNavDe~~~g~~-----~~I~V~i~~Dgs---IPvd~h~~~g~~--~~E~v~t~LhaGgkFd~~~~~y 173 (709)
+.-|.+++.++|+||+.-...|.. ..|.|++..++. |-|.. ...|++ ..+-+|.....+..-...+ .-
T Consensus 229 ~~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D-~G~GI~~~~~~~iF~~f~~~~~~~~~~-~~ 306 (394)
T 2btz_A 229 PSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSD-RGGGVPLRKIERLFSYMYSTAPTPQPG-TG 306 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEE-CSCCCCHHHHHHHTCTTTTCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCCEEEEEEEe-CCCCCCHHHHHHHhcccccCCCCCCcc-cC
Confidence 346889999999999998777642 357766654332 22211 111221 1223333322221100000 00
Q ss_pred eeccCcccccceeeeeeccee
Q 005193 174 SVSGGLHGVGLSVVNALSESL 194 (709)
Q Consensus 174 kvsGGlhGvGasvvNAlS~~f 194 (709)
....+-.|+|+++|..+.+.+
T Consensus 307 ~~~~~G~GLGL~i~~~i~~~~ 327 (394)
T 2btz_A 307 GTPLAGFGYGLPISRLYAKYF 327 (394)
T ss_dssp -------CCHHHHHHHHHHHT
T ss_pred CCCCCCccCCHHHHHHHHHHh
Confidence 111223799999998888765
No 56
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=53.05 E-value=11 Score=38.45 Aligned_cols=30 Identities=10% Similarity=0.323 Sum_probs=19.8
Q ss_pred CchhHHHHHHHHhhHHhhccCCCCeEEEEEec
Q 005193 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136 (709)
Q Consensus 105 ~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~ 136 (709)
.-|..++.++|+||++.... ...|.|.+..
T Consensus 243 ~~l~~vl~nLl~NA~k~~~~--~~~i~i~~~~ 272 (349)
T 3a0r_A 243 TRIKQVLINLVQNAIEATGE--NGKIKITSED 272 (349)
T ss_dssp HHHHHHHHHHHTHHHHTTCT--TCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccC--CCEEEEEEEe
Confidence 34778888999999886532 3456555543
No 57
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=50.85 E-value=17 Score=31.66 Aligned_cols=30 Identities=23% Similarity=0.174 Sum_probs=19.9
Q ss_pred CchhHHHHHHHHhhHHhhccCCCCeEEEEEecC
Q 005193 105 RGLHHLVYEILDNAVDEAQAGYASNIEVALLAD 137 (709)
Q Consensus 105 ~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~D 137 (709)
.-|..++.|+|+||+..+. ++.|.|.+..+
T Consensus 39 ~~l~~il~nll~Na~k~~~---~~~i~i~~~~~ 68 (128)
T 3ehg_A 39 NILSMCLKEAVTNVVKHSQ---AKTCRVDIQQL 68 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTC---CSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCC---CcEEEEEEEEe
Confidence 3456677788888877653 35787777653
No 58
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=50.09 E-value=7.2 Score=38.40 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=21.9
Q ss_pred CCCchhHHHHHHHHhhHHhhccCC-CCeEEEEEe
Q 005193 103 GPRGLHHLVYEILDNAVDEAQAGY-ASNIEVALL 135 (709)
Q Consensus 103 ~~~GL~hlv~EIldNavDe~~~g~-~~~I~V~i~ 135 (709)
++.-|.+++..+|+||++....+. ...|.|.+.
T Consensus 135 d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~ 168 (258)
T 2c2a_A 135 DPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILD 168 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEe
Confidence 445688899999999998654432 244555544
No 59
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=48.68 E-value=7.2 Score=41.70 Aligned_cols=89 Identities=16% Similarity=0.229 Sum_probs=45.0
Q ss_pred CchhHHHHHHHHhhHHhhccCC-----CCeEEEEEecCCc---cccccCCCCCcc--ceEEEEeeeccCCCCCCCCCcee
Q 005193 105 RGLHHLVYEILDNAVDEAQAGY-----ASNIEVALLADNS---IPIDLHPATNKS--ALETVLTVLHAGGKFGGSSSGYS 174 (709)
Q Consensus 105 ~GL~hlv~EIldNavDe~~~g~-----~~~I~V~i~~Dgs---IPvd~h~~~g~~--~~E~v~t~LhaGgkFd~~~~~yk 174 (709)
.-|.+++.++|+||+.-...|. ...|.|++..++. |-|.. ...|++ ..+-||.....+.+-...+....
T Consensus 229 ~~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D-~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~ 307 (394)
T 2e0a_A 229 SHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISD-RGGGVPLRIIDRLFSYTYSTAPTPVMDNSRN 307 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEE-CSCCCCGGGHHHHTSTTCCSSCCC------C
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEe-CCCCcCHHHHHHHhCcCccCCCCCCcCcCCC
Confidence 4588999999999998776654 2357666654332 22211 111221 12233333322221100000011
Q ss_pred eccCcccccceeeeeeccee
Q 005193 175 VSGGLHGVGLSVVNALSESL 194 (709)
Q Consensus 175 vsGGlhGvGasvvNAlS~~f 194 (709)
...+-.|+|+++|..+.+.+
T Consensus 308 ~~~~G~GLGL~i~~~i~~~~ 327 (394)
T 2e0a_A 308 APLAGFGYGLPISRLYAKYF 327 (394)
T ss_dssp CCSSCSSCHHHHHHHHHHHT
T ss_pred CCCCCcccCHHHHHHHHHHh
Confidence 12234899999998888765
No 60
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=36.39 E-value=11 Score=34.13 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.6
Q ss_pred ccee-EEEeecCCCCCchhhhhHHHHHH
Q 005193 561 RYHK-IIILTDADVDGAHIRTLLLTFFY 587 (709)
Q Consensus 561 RYgk-IiImTDaDvDG~HI~~Llltff~ 587 (709)
||.. |||+||.|.=|-.|+.-+...|-
T Consensus 60 ~~~~~VIIltD~D~aGe~ir~~i~~~l~ 87 (118)
T 1t6t_1 60 GKWEKVILLFDLDTHGERINQKMKELLS 87 (118)
T ss_dssp TTCSEEEECCCSSHHHHHHHHHHHHHHH
T ss_pred hCCCEEEEEECCChhHHHHHHHHHHhcC
Confidence 4666 99999999999999998866653
No 61
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=34.25 E-value=32 Score=32.51 Aligned_cols=30 Identities=23% Similarity=0.131 Sum_probs=19.6
Q ss_pred chhHHHHHHHHhhHHhhccCCCCeEEEEEecCC
Q 005193 106 GLHHLVYEILDNAVDEAQAGYASNIEVALLADN 138 (709)
Q Consensus 106 GL~hlv~EIldNavDe~~~g~~~~I~V~i~~Dg 138 (709)
-|..++.|+|.||+..+- ++.|.|.+..++
T Consensus 130 ~l~~il~nll~Na~k~~~---~~~i~i~~~~~~ 159 (218)
T 3ehh_A 130 ILSMCLKEAVTNVVKHSQ---AKTCRVDIQQLW 159 (218)
T ss_dssp HHHHHHHHHHHHHHHHTC---CSEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHhCC---CCEEEEEEEEeC
Confidence 355677777777777652 357877776543
No 62
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=30.44 E-value=6.3 Score=42.62 Aligned_cols=89 Identities=11% Similarity=0.187 Sum_probs=42.9
Q ss_pred CchhHHHHHHHHhhHHhhccCC------CCeEEEEEecCCc---cccccCCCCCcc--ceEEEEeeeccCCCCCCCCCce
Q 005193 105 RGLHHLVYEILDNAVDEAQAGY------ASNIEVALLADNS---IPIDLHPATNKS--ALETVLTVLHAGGKFGGSSSGY 173 (709)
Q Consensus 105 ~GL~hlv~EIldNavDe~~~g~------~~~I~V~i~~Dgs---IPvd~h~~~g~~--~~E~v~t~LhaGgkFd~~~~~y 173 (709)
.-|.+++.++|+||+.-...|. ...|.|.+..++. |-|.. ...|++ ..+-||.....+.+-...+..-
T Consensus 252 ~~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D-~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~ 330 (419)
T 1y8o_A 252 SHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISD-LGGGVPLRKIDRLFNYMYSTAPRPSLEPTR 330 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEE-CSCCCCHHHHGGGGCTTTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEE-CCCCCCHHHHHHHhCcccccCCCCCccccC
Confidence 4588999999999998776653 2356666654332 22211 111221 1223343332222110000001
Q ss_pred eeccCcccccceeeeeeccee
Q 005193 174 SVSGGLHGVGLSVVNALSESL 194 (709)
Q Consensus 174 kvsGGlhGvGasvvNAlS~~f 194 (709)
....+-.|+|+++|..+-+.+
T Consensus 331 ~~~~~G~GLGL~I~k~iv~~~ 351 (419)
T 1y8o_A 331 AAPLAGFGYGLPISRLYARYF 351 (419)
T ss_dssp --CC--CTTHHHHHHHHHHHT
T ss_pred CCCcCCeecCHHHHHHHHHHh
Confidence 111233799999998887765
No 63
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=25.76 E-value=18 Score=32.66 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=36.4
Q ss_pred cceeEEEeecCCCCCchhhhhHHHHHHHHHHHhhhcCcEEEecCCeEEEEeCCeEEEeeCHHHHHHHHHh
Q 005193 561 RYHKIIILTDADVDGAHIRTLLLTFFYRYQKTLFDEGCIYVGVPPLYKVERGKQVQYCYDDAELKKVKSS 630 (709)
Q Consensus 561 RYgkIiImTDaDvDG~HI~~Llltff~~~~p~Li~~G~i~~~~tPL~kv~~gk~~~y~ys~~e~~~~~~~ 630 (709)
.+..|||+||.|.=|.-||..|...| |. ..+.|+...|. |=+. -+.++..+.+.+
T Consensus 49 ~~r~VIi~TD~D~~GekIRk~i~~~l----p~---~~hafi~r~~~-----gVE~---a~~~~I~~aL~~ 103 (119)
T 2fcj_A 49 EGYDVYLLADADEAGEKLRRQFRRMF----PE---AEHLYIDRAYR-----EVAA---APIWHLAQVLLR 103 (119)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHC----TT---SEEECCCTTTC-----STTT---SCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHHHHHHC----CC---CcEEeccCCcc-----Cccc---CCHHHHHHHHHh
Confidence 46789999999999999998875444 33 25777777664 2111 244556665555
No 64
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=22.69 E-value=94 Score=31.88 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=41.9
Q ss_pred ccCcccccceeeeeecceeEEEEEeCCEEEEEEccCCCCCcceeeec---cCCCCCCCCCeEEEEEcCcc
Q 005193 176 SGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHV---LPVDSKDRQGTRIRFWPDKQ 242 (709)
Q Consensus 176 sGGlhGvGasvvNAlS~~f~Vev~r~Gk~y~q~f~~G~~~~~l~~~~---~~~~~~~~~GT~V~F~PD~~ 242 (709)
.-|.-|||..-+=.++++++|.++.++..|..+...+.. -.+.... ...+....+||+|......+
T Consensus 174 ~IGqFGVGFySaFmVAdkV~V~Sk~dd~~~~WeS~g~gs-fti~~~~~~~~~~g~~~~~GT~I~L~Lked 242 (272)
T 3ied_A 174 LIGQFGVGFYSSFLVSNRVEVYTKKEDQIYRWSSDLKGS-FSVNEIKKYDQEYDDIKGSGTKIILHLKEE 242 (272)
T ss_dssp CGGGSCCGGGGGGGTEEEEEEEEESSSCEEEEEECSSSE-EEEEECTTCTTCC--CCSSEEEEEEEECGG
T ss_pred ccCcccceeheeeccCCEEEEEEcCCCceEEEEECCCCC-EEEEECcccccccCCCCCCCcEEEEEECCC
Confidence 459999999988888899999998666666665543322 1221111 00123457899998775543
No 65
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=22.34 E-value=59 Score=28.60 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=21.7
Q ss_pred CCchhHHHHHHHHhhHHhhccCCCCeEEEEEec
Q 005193 104 PRGLHHLVYEILDNAVDEAQAGYASNIEVALLA 136 (709)
Q Consensus 104 ~~GL~hlv~EIldNavDe~~~g~~~~I~V~i~~ 136 (709)
..-|..++.++|+||+.....| .|.|.+..
T Consensus 44 ~~~l~~il~nLl~NA~~~~~~~---~I~i~~~~ 73 (150)
T 1ysr_A 44 PAGLRLAVDNAIANAVKHGGAT---LVQLSAVS 73 (150)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCS---EEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCc---EEEEEEEe
Confidence 4568889999999999875443 66666654
No 66
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=21.04 E-value=56 Score=21.69 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=14.8
Q ss_pred hHHHHHHHHhhHHhhccC
Q 005193 108 HHLVYEILDNAVDEAQAG 125 (709)
Q Consensus 108 ~hlv~EIldNavDe~~~g 125 (709)
.+-+.|++||+|..+.+.
T Consensus 11 ekqieelldncietfvae 28 (31)
T 4h62_V 11 EKQIEELLDNCIETFVAE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 467899999999988764
Done!