RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 005193
(709 letters)
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 252 bits (643), Expect = 6e-74
Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 17/241 (7%)
Query: 471 RSSSLPG--KLADCS---STTPEESEIFIVEGDSA-----GGSAKQGRDRRFQAILPLRG 520
R S + KL D + + + + + EGDSA G A GRD + PLRG
Sbjct: 1 RKSRITNYPKLEDANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRD--YYGCYPLRG 58
Query: 521 KILNVERKDEAAMYKNEEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDGAHIRT 580
K+LNV + KN EIQ + + +GL + + ++LRY ++I+TD D DG+HI+
Sbjct: 59 KMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKG 118
Query: 581 LLLTFFYRYQKTLFD-EGCIYVGVPPLYKVERGKQVQY---CYDDAELKKVKSSFPSNAL 636
L++ F L D +G + + P+ KV K + Y+ + +K +
Sbjct: 119 LIINFLESSFLGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREEESHKFT 178
Query: 637 YSIQRFKGLGEMMPVQLWETTLNPEQRMLKQLVIEDAAEANVVFSSLMGARVDTRKELIQ 696
+ + +KGLG + ++ E N ++ + K + + + + + D RKE ++
Sbjct: 179 WKQKYYKGLGTSLAQEVREYFSNLDRHL-KIFHSLQGNDKDYIDLAFSKKKADDRKEWLR 237
Query: 697 N 697
Sbjct: 238 Q 238
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId:
562]}
Length = 219
Score = 219 bits (560), Expect = 9e-68
Identities = 101/229 (44%), Positives = 139/229 (60%), Gaps = 20/229 (8%)
Query: 74 SKTYGSEQIQVLEGLEAVRKRPAMYIGSTGP-RGLHHLVYEILDNAVDEAQAGYASNIEV 132
S + S I+VL+GL+AVRKRP MYIG T GLHH+V+E++DNA+DEA AG+ I V
Sbjct: 1 SNSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 60
Query: 133 ALLADNSI---------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVG 183
+ ADNS+ P +HP SA E ++TVLHAGGKF +S Y VSGGLHGVG
Sbjct: 61 TIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNS--YKVSGGLHGVG 118
Query: 184 LSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQV 243
+SVVNALS+ LE+ + R+G + Q Y G P L ++ GT +RFWP +
Sbjct: 119 VSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLA----VTGETEKTGTMVRFWPSLET 174
Query: 244 FTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNEYFFAG 292
FT +F++ +A R+REL+FL+ ++I LR + E + + G
Sbjct: 175 FTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKED----HFHYEG 219
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus
[TaxId: 274]}
Length = 212
Score = 195 bits (497), Expect = 8e-59
Identities = 96/215 (44%), Positives = 126/215 (58%), Gaps = 14/215 (6%)
Query: 82 IQVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSI- 140
I+VL+GLE VR RPAMYIG TG G HHL EILDNAVDEA AGYA+ I V L D S+
Sbjct: 2 IRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDGSLT 61
Query: 141 --------PIDLHPATNKSALETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSE 192
P+DL P K A+E + LH+GGKF + Y VSGGLHGVG SVVNALSE
Sbjct: 62 VEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGA--YKVSGGLHGVGASVVNALSE 119
Query: 193 SLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDH 252
V V+R+G + +SRG+ L + + GTR+ F PD ++F ++FD
Sbjct: 120 WTVVEVFREGKHHRIAFSRGEVTEPLRVV--GEAPRGKTGTRVTFKPDPEIFGN-LRFDP 176
Query: 253 NTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYNE 287
+ I R+RE+A+L L + + E+ ++
Sbjct: 177 SKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDK 211
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli
[TaxId: 562]}
Length = 168
Score = 172 bits (437), Expect = 7e-51
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 37/195 (18%)
Query: 102 TGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSI---------PIDLHPATNKSA 152
T +HL E++DN+VDEA AG+A ++V L AD S+ P+D+HP A
Sbjct: 1 TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPA 60
Query: 153 LETVLTVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRG 212
+E +L + SVVNALS+ +EV V RDG Y+ + G
Sbjct: 61 VELILCI-------------------------SVVNALSKRVEVNVRRDGQVYNIAFENG 95
Query: 213 KPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIA 272
+ V L K GT + FWPD+ F + +F + + ++ A L P + I
Sbjct: 96 EKVQDLQVV--GTCGKRNTGTSVHFWPDETFFDS-PRFSVSRLTHVLKAKAVLCPGVEIT 152
Query: 273 LRKEDSDPEKNQYNE 287
+ E ++ E+ +
Sbjct: 153 FKDEINNTEQRWCYQ 167
>d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId:
562]}
Length = 172
Score = 149 bits (378), Expect = 1e-42
Identities = 66/172 (38%), Positives = 110/172 (63%), Gaps = 2/172 (1%)
Query: 293 GLEEYVQWLNTDKKPLH-DVVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGG 351
G++ +V++LN +K P+H ++ F + DGI +++ALQW D + + + + N+I DGG
Sbjct: 1 GIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGG 59
Query: 352 THIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTR 411
TH+ G +A++TRTLN+ K K +S +G+ REGL ++SV+VP+P+F QTK +
Sbjct: 60 THLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDK 119
Query: 412 LGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDL 463
L + EV+ V+Q + E L EYL +P ++ K + A +A AA+RAR++
Sbjct: 120 LVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM 171
>d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus
[TaxId: 274]}
Length = 172
Score = 147 bits (373), Expect = 7e-42
Identities = 62/173 (35%), Positives = 98/173 (56%), Gaps = 2/173 (1%)
Query: 293 GLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGG 351
G+ + + L + L++ R + +++ Y+ +L YAN I T DGG
Sbjct: 1 GVASFAKALAEGEDLLYEKPFLIRGTHGEVEVEVGFLHT-QGYNAEILTYANMIPTRDGG 59
Query: 352 THIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTR 411
TH+ K++ +R LN KK+ K+K +G+ + EGL ++SV++PNP+FEGQTK +
Sbjct: 60 THLTAFKSAYSRALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGK 119
Query: 412 LGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAAKRARDLV 464
L NPE V Q V E L E LE +P + ++ K+L A +A AA++AR+LV
Sbjct: 120 LLNPEAGTAVGQVVYERLLEILEENPRIAKAVYEKALRAAQAREAARKARELV 172
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B
{Escherichia coli [TaxId: 562]}
Length = 167
Score = 144 bits (364), Expect = 1e-40
Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 2/166 (1%)
Query: 293 GLEEYVQWLNTDKKPLHD-VVGFRKDVDGITIDLALQWCSDAYSDTMLGYANSIRTIDGG 351
GL +Y+ L + D +D AL W + Y N I T+ GG
Sbjct: 2 GLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGG 61
Query: 352 THIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPNPEFEGQTKTR 411
TH+ G++ L + + + + + LS E + + ++SV++ +P+F GQTK R
Sbjct: 62 THVNGLRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKER 120
Query: 412 LGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILSKSLSALKAALAA 457
L + + V V++ +L + + + ++S+ + + A
Sbjct: 121 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRA 166
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 239
Score = 130 bits (327), Expect = 9e-35
Identities = 50/237 (21%), Positives = 84/237 (35%), Gaps = 44/237 (18%)
Query: 79 SEQIQVLEGLEAVRKRPAMYIGSTGPR-----------------------GLHHLVYEIL 115
S++ Q + LE + KRP YIGS + GL + EIL
Sbjct: 3 SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEIL 62
Query: 116 DNAVDEAQAGYA-SNIEVALLA-DNSI---------PIDLHPATNKSALETVLTVLHAGG 164
NA D + I+V + A +++I PI++H N E + L
Sbjct: 63 VNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 122
Query: 165 KFGGSSSGYSVSGGLHGVGLSVVNALSESLEV--TVWRDGMEYHQKYSRGKPVTTLTCHV 222
+ V+GG +G G + N S + G +Y QK+ +
Sbjct: 123 NY--DDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKI- 179
Query: 223 LPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLN---PKLTIALRKE 276
K T++ F PD F + D++ + R + +N + + L +
Sbjct: 180 -TSYKKGPSYTKVTFKPDLTRFGM-KELDNDILGVMRRRVYDINGSVRDINVYLNGK 234
>d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 161
Score = 86.3 bits (213), Expect = 2e-20
Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 16/164 (9%)
Query: 290 FAGGLEEYVQWLNTDKKPLHDVVGFRK--------DVDGITIDLALQWCSDAYSDTMLGY 341
F +E Y++ L ++ + G K + ++A ++ + +
Sbjct: 2 FKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSDISF--QQISF 59
Query: 342 ANSIRTIDGGTHIEGVKASLTRTLNSLGKKSKTVKDKDISLSGEHVREGLTCIISVRVPN 401
NSI T GGTH+ + + + ++ + KK K S+ ++ + I+ + N
Sbjct: 60 VNSIATTMGGTHVNYITDQIVKKISEILKK-----KKKKSVKSFQIKNNMFIFINCLIEN 114
Query: 402 PEFEGQTKTRLGNPEVRKVVDQSVQEYLTEYLELHPDVLDSILS 445
P F QTK +L + + + D+ +
Sbjct: 115 PAFTSQTKEQLTTRVKDFGSRCEIPLEYINKI-MKTDLATRMFE 157
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 40.2 bits (93), Expect = 3e-04
Identities = 26/182 (14%), Positives = 61/182 (33%), Gaps = 11/182 (6%)
Query: 107 LHHLVYEILDNAVDEAQAGYASNIEVALLADNSIPI---DLHPATNKSALETVLTVLHAG 163
L V E+++N++D AG A+NI++ L I D + E + H
Sbjct: 7 LSTAVKELVENSLD---AG-ATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTS 62
Query: 164 GKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVL 223
+ + G G LS + ALS+ + ++ + + +
Sbjct: 63 KIQEFADLTQVETFGFRGEALSSLCALSD-VTISTCHASAKVGTRLMFDHNGKIIQKTPY 121
Query: 224 PVDSKDRQGTRIRFWPD---KQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALRKEDSDP 280
P + F + F I+ ++ + + ++ + ++ +
Sbjct: 122 PRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQG 181
Query: 281 EK 282
++
Sbjct: 182 KR 183
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 219
Score = 34.0 bits (77), Expect = 0.041
Identities = 28/216 (12%), Positives = 64/216 (29%), Gaps = 33/216 (15%)
Query: 89 EAVRKRPAMYIGSTGPRGLHHLVYEILDNAVD-EAQAGYASNIEVAL-----------LA 136
E ++ P + R L+ V E+++N++D G NI++ + +
Sbjct: 5 EFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVN 64
Query: 137 DNSIPIDLHPATNKSALETVLTVLHAGGKFGGSSSG------YSVSGGLHGVGLSVVNAL 190
I + P +A VL + G S + + +
Sbjct: 65 VVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSP 124
Query: 191 SESLEVTVWRDGMEYHQKYSRGKPVTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQF 250
S + ++ ++ ++ ++ +++ GT +
Sbjct: 125 VNSKRIYTFKLKIDINKNEPIIVERGSVE------NTRGFHGTSVAISIPGDWPKAK--- 175
Query: 251 DHNTIAGRIRELAFLNPKLTIALRKEDSDPEKNQYN 286
+ I I+ + P + DPE N
Sbjct: 176 --SRIYEYIKRTYIITPYAEFIFK----DPEGNVTY 205
>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 29.7 bits (66), Expect = 0.69
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 537 EEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDG 575
+E+Q + G+ + F E R ++ + D D+ G
Sbjct: 26 DELQRCLTQSGIAGGYKPFNLETCR--LMVSMLDRDMSG 62
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 30.2 bits (67), Expect = 0.81
Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 14/106 (13%)
Query: 120 DEAQAGYASNIEVALLADNSIPIDLHPATNK---SALETVLTVLHAGGKFGGSSSGYSVS 176
+ +I N I + +P + + V + HA G + G +
Sbjct: 68 ENVHKLMDLSINK-----NWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTI 122
Query: 177 GGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTTLTCHV 222
G L + WR ME K + + +
Sbjct: 123 GSSEACMLGGMAMKWR------WRKRMEAAGKPTDKPNLVCGPVQI 162
>d2b5ti1 e.1.1.1 (I:6-431) Antithrombin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 426
Score = 29.4 bits (65), Expect = 1.6
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 10/44 (22%)
Query: 663 RMLKQLVIEDAAEANVVFSSL----------MGARVDTRKELIQ 696
+ L N+ S L +GA DT ++L++
Sbjct: 56 TFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLQQLME 99
>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId:
9606]}
Length = 165
Score = 28.4 bits (63), Expect = 1.8
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 537 EEIQNLIRALGLGVKGEDFKKEALRYHKIIILTDADVDG 575
EE+Q + G+ F E R +I + D D G
Sbjct: 19 EELQRCLTQSGINGTYSPFSLETCR--IMIAMLDRDHTG 55
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 297
Score = 28.6 bits (62), Expect = 2.6
Identities = 14/217 (6%), Positives = 51/217 (23%), Gaps = 3/217 (1%)
Query: 158 TVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDG---MEYHQKYSRGKP 214
+ +GG ++ ++S + ++ + RD + + G+
Sbjct: 32 LHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLIPKFLMANGEL 91
Query: 215 VTTLTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHNTIAGRIRELAFLNPKLTIALR 274
L + +Q + + +++ + + K +
Sbjct: 92 TNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWI 151
Query: 275 KEDSDPEKNQYNEYFFAGGLEEYVQWLNTDKKPLHDVVGFRKDVDGITIDLALQWCSDAY 334
+ + + + + V + + +G + L
Sbjct: 152 SSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFE 211
Query: 335 SDTMLGYANSIRTIDGGTHIEGVKASLTRTLNSLGKK 371
+ + + + L + L
Sbjct: 212 RILLYCQSVARYGKSPYLYPMYGLGELPQGFARLSAI 248
>d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus
[TaxId: 274]}
Length = 385
Score = 28.3 bits (62), Expect = 3.8
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 564 KIIILTDADVDGAHIRTLLLTFF 586
+I + D D DG +L+
Sbjct: 26 RIRVHGDYDADGLTGTAILVRGL 48
>d1jmja_ e.1.1.1 (A:) Heparin cofactor II (Hc-II, leuserpin 2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 420
Score = 27.9 bits (61), Expect = 5.3
Identities = 4/44 (9%), Positives = 16/44 (36%), Gaps = 10/44 (22%)
Query: 663 RMLKQLVIEDAAEANVVFSSL----------MGARVDTRKELIQ 696
+ + L + N+ + + +G + +T +++
Sbjct: 57 NLYRVLKDQVNTFDNIFIAPVGISTAMGMISLGLKGETHEQVHS 100
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 27.5 bits (59), Expect = 6.3
Identities = 9/96 (9%), Positives = 23/96 (23%)
Query: 158 TVLHAGGKFGGSSSGYSVSGGLHGVGLSVVNALSESLEVTVWRDGMEYHQKYSRGKPVTT 217
+ +GG SS + L+ + W + + G+ V
Sbjct: 33 LHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMANGQLVKM 92
Query: 218 LTCHVLPVDSKDRQGTRIRFWPDKQVFTTAIQFDHN 253
L + + + +++
Sbjct: 93 LLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEA 128
>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 25.6 bits (56), Expect = 8.1
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 142 IDLHPATNKSALETVLTVLHAG 163
+DLH A + ++ +L V +G
Sbjct: 2 VDLHKAKDLEGVDIILGVCSSG 23
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated
herpesvirus [TaxId: 37296]}
Length = 146
Score = 26.3 bits (58), Expect = 8.7
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 83 QVLEGLEAVRKRPAMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASNIEVALLADNSIPI 142
VL G + M G P L+H + + + S E A+LA+ +
Sbjct: 4 DVLPGEVLAIEGIFMACGLNEPEYLYHPLLSPIKLYITGLMRDKESLFE-AMLAN----V 58
Query: 143 DLHPATNKSALETVLTVLHAGGKF 166
H T L + + G
Sbjct: 59 RFHSTTGIDQLGLSMLQVSGDGNM 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.384
Gapped
Lambda K H
0.267 0.0678 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,549,646
Number of extensions: 120807
Number of successful extensions: 337
Number of sequences better than 10.0: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 23
Length of query: 709
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 617
Effective length of database: 1,144,436
Effective search space: 706117012
Effective search space used: 706117012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)