Query 005197
Match_columns 709
No_of_seqs 606 out of 3231
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 19:38:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 7E-112 1E-116 949.7 53.3 574 81-708 67-641 (727)
2 PLN03192 Voltage-dependent pot 100.0 5.4E-68 1.2E-72 632.1 52.4 475 55-609 24-499 (823)
3 KOG0501 K+-channel KCNQ [Inorg 100.0 2.3E-66 5E-71 543.7 28.1 513 81-671 207-720 (971)
4 KOG0500 Cyclic nucleotide-gate 100.0 4.1E-61 9E-66 501.3 37.5 427 100-606 5-433 (536)
5 KOG0499 Cyclic nucleotide-gate 100.0 5.3E-57 1.2E-61 475.4 33.5 450 56-600 190-645 (815)
6 KOG1545 Voltage-gated shaker-l 99.7 8.1E-19 1.7E-23 177.3 -0.5 299 31-410 122-455 (507)
7 KOG3713 Voltage-gated K+ chann 99.7 9.4E-16 2E-20 163.5 17.4 195 132-410 239-439 (477)
8 PRK09392 ftrB transcriptional 99.7 2E-15 4.4E-20 154.5 16.6 153 472-651 6-158 (236)
9 PRK11753 DNA-binding transcrip 99.6 7E-14 1.5E-18 140.4 19.8 116 482-607 6-122 (211)
10 PRK11161 fumarate/nitrate redu 99.5 1.6E-13 3.4E-18 140.4 16.5 122 475-608 15-138 (235)
11 PRK10402 DNA-binding transcrip 99.5 6.9E-13 1.5E-17 134.9 15.9 109 489-608 24-133 (226)
12 cd00038 CAP_ED effector domain 99.4 1.7E-12 3.7E-17 115.6 12.4 111 480-601 1-112 (115)
13 PF00520 Ion_trans: Ion transp 99.4 6.2E-13 1.3E-17 131.3 10.1 193 137-397 1-200 (200)
14 COG0664 Crp cAMP-binding prote 99.4 7.2E-12 1.6E-16 125.3 17.7 123 476-609 3-126 (214)
15 PRK09391 fixK transcriptional 99.4 6.2E-12 1.4E-16 128.2 14.4 161 491-681 33-207 (230)
16 smart00100 cNMP Cyclic nucleot 99.4 1.3E-11 2.9E-16 110.5 14.1 115 480-603 1-116 (120)
17 KOG1419 Voltage-gated K+ chann 99.3 1.1E-11 2.3E-16 132.8 13.5 90 344-440 265-354 (654)
18 PF00027 cNMP_binding: Cyclic 99.3 5.6E-12 1.2E-16 108.1 9.3 89 499-598 2-91 (91)
19 PRK13918 CRP/FNR family transc 99.3 6.5E-11 1.4E-15 118.1 15.5 153 495-670 5-160 (202)
20 TIGR03697 NtcA_cyano global ni 99.3 7.3E-11 1.6E-15 116.7 15.2 97 504-609 1-98 (193)
21 KOG0614 cGMP-dependent protein 99.3 1.2E-11 2.7E-16 131.6 9.2 131 469-608 268-399 (732)
22 COG2905 Predicted signal-trans 99.2 1.7E-10 3.6E-15 125.0 15.4 117 472-602 6-122 (610)
23 KOG0614 cGMP-dependent protein 99.1 1.2E-10 2.5E-15 124.3 8.9 124 465-603 146-269 (732)
24 PLN02868 acyl-CoA thioesterase 99.1 3.5E-10 7.6E-15 125.3 13.1 113 472-597 7-119 (413)
25 KOG1113 cAMP-dependent protein 99.1 2.4E-10 5.2E-15 117.2 8.2 119 472-605 121-239 (368)
26 PF07885 Ion_trans_2: Ion chan 99.0 3.4E-09 7.3E-14 88.9 10.3 55 348-402 24-78 (79)
27 KOG4390 Voltage-gated A-type K 98.9 1.9E-10 4.2E-15 117.9 1.4 184 131-401 225-409 (632)
28 KOG1113 cAMP-dependent protein 98.8 9.5E-09 2.1E-13 105.7 9.0 118 467-598 234-351 (368)
29 KOG1420 Ca2+-activated K+ chan 98.6 3.2E-08 6.9E-13 106.2 4.8 137 346-490 286-427 (1103)
30 KOG3684 Ca2+-activated K+ chan 98.2 0.00011 2.3E-09 78.6 19.9 93 345-445 284-376 (489)
31 KOG2968 Predicted esterase of 98.2 2.7E-06 5.9E-11 96.5 7.7 113 488-611 500-613 (1158)
32 PRK10537 voltage-gated potassi 98.1 4.3E-05 9.3E-10 83.6 14.4 54 348-401 168-221 (393)
33 PF08412 Ion_trans_N: Ion tran 98.1 1.9E-06 4E-11 70.7 2.8 49 67-115 19-70 (77)
34 PF01007 IRK: Inward rectifier 98.0 3.7E-05 8E-10 82.0 11.0 58 347-404 83-142 (336)
35 KOG2968 Predicted esterase of 97.7 0.0002 4.2E-09 81.9 11.4 113 492-608 111-224 (1158)
36 PF04831 Popeye: Popeye protei 97.5 0.0035 7.5E-08 58.0 14.4 108 483-600 14-123 (153)
37 KOG1418 Tandem pore domain K+ 97.4 0.00037 8E-09 77.4 7.7 61 348-408 115-175 (433)
38 PRK11832 putative DNA-binding 97.3 0.0081 1.8E-07 59.2 15.0 96 488-597 14-110 (207)
39 KOG3542 cAMP-regulated guanine 96.6 0.0048 1E-07 68.5 7.1 115 468-596 276-391 (1283)
40 KOG3827 Inward rectifier K+ ch 96.1 0.033 7.2E-07 58.9 9.7 62 347-408 111-174 (400)
41 KOG4404 Tandem pore domain K+ 95.9 0.043 9.4E-07 56.7 9.7 59 348-406 186-252 (350)
42 KOG4404 Tandem pore domain K+ 95.8 0.0018 3.9E-08 66.6 -0.7 49 348-396 80-128 (350)
43 PLN03223 Polycystin cation cha 95.7 1.7 3.7E-05 53.4 22.5 67 85-155 1169-1235(1634)
44 KOG3193 K+ channel subunit [In 95.7 0.035 7.5E-07 60.5 8.0 40 349-388 218-257 (1087)
45 KOG2302 T-type voltage-gated C 95.0 0.66 1.4E-05 54.5 15.9 87 81-193 1104-1201(1956)
46 KOG1418 Tandem pore domain K+ 92.7 0.034 7.3E-07 61.7 0.2 49 347-395 241-297 (433)
47 KOG3542 cAMP-regulated guanine 90.8 0.4 8.6E-06 53.9 5.7 105 459-586 23-127 (1283)
48 KOG2301 Voltage-gated Ca2+ cha 88.2 4.1 8.9E-05 52.1 12.5 49 131-199 870-919 (1592)
49 KOG2302 T-type voltage-gated C 87.2 78 0.0017 38.3 22.4 57 94-159 81-140 (1956)
50 COG4709 Predicted membrane pro 81.9 7.2 0.00016 37.7 8.0 72 414-487 6-81 (195)
51 KOG3676 Ca2+-permeable cation 78.7 44 0.00096 39.4 14.5 75 361-436 601-682 (782)
52 PF08006 DUF1700: Protein of u 76.7 13 0.00029 36.1 8.6 56 413-470 5-64 (181)
53 TIGR03037 anthran_nbaC 3-hydro 67.3 17 0.00037 34.5 6.5 45 502-550 36-81 (159)
54 PF07883 Cupin_2: Cupin domain 66.8 8 0.00017 30.7 3.8 45 499-550 3-48 (71)
55 PRK13290 ectC L-ectoine syntha 63.3 41 0.00088 30.7 8.1 69 497-584 38-106 (125)
56 PF13314 DUF4083: Domain of un 60.3 42 0.0009 25.9 6.1 47 374-423 4-56 (58)
57 PF00060 Lig_chan: Ligand-gate 60.0 11 0.00024 34.7 4.0 60 345-405 41-100 (148)
58 PRK13264 3-hydroxyanthranilate 55.7 24 0.00051 34.1 5.3 60 512-588 52-111 (177)
59 KOG3599 Ca2+-modulated nonsele 53.7 4.9E+02 0.011 31.7 17.8 24 132-155 497-520 (798)
60 PF14377 DUF4414: Domain of un 51.3 23 0.00049 31.4 4.2 44 426-469 52-105 (108)
61 PF07697 7TMR-HDED: 7TM-HD ext 48.0 86 0.0019 31.1 8.5 58 457-515 147-207 (222)
62 PF05899 Cupin_3: Protein of u 47.5 26 0.00057 28.6 3.7 42 501-550 14-55 (74)
63 KOG2301 Voltage-gated Ca2+ cha 46.4 2.5E+02 0.0055 36.7 13.6 47 132-199 472-519 (1592)
64 PF10011 DUF2254: Predicted me 44.9 91 0.002 34.1 8.6 60 346-405 98-157 (371)
65 smart00835 Cupin_1 Cupin. This 43.7 60 0.0013 30.1 6.1 53 496-550 32-86 (146)
66 TIGR00870 trp transient-recept 40.6 7.2E+02 0.016 29.8 26.9 41 373-413 587-628 (743)
67 PF08016 PKD_channel: Polycyst 39.8 2E+02 0.0043 32.0 10.5 21 176-196 233-254 (425)
68 COG1917 Uncharacterized conser 38.2 67 0.0015 29.1 5.4 50 496-552 45-95 (131)
69 PLN03192 Voltage-dependent pot 37.3 8.5E+02 0.018 29.7 27.1 43 425-472 357-399 (823)
70 COG0662 {ManC} Mannose-6-phosp 36.6 78 0.0017 28.7 5.5 48 495-549 37-85 (127)
71 KOG1053 Glutamate-gated NMDA-t 34.1 6.3E+02 0.014 30.8 13.1 48 353-402 616-663 (1258)
72 KOG1054 Glutamate-gated AMPA-t 32.7 46 0.001 37.8 3.8 71 350-426 597-667 (897)
73 PF01484 Col_cuticle_N: Nemato 31.9 2.1E+02 0.0046 21.2 6.9 42 377-418 8-49 (53)
74 KOG4440 NMDA selective glutama 31.4 89 0.0019 35.8 5.7 54 349-402 614-667 (993)
75 PHA03029 hypothetical protein; 28.8 2.9E+02 0.0063 22.5 6.6 37 372-408 2-38 (92)
76 COG1422 Predicted membrane pro 28.5 2.1E+02 0.0045 28.3 7.0 39 385-423 48-89 (201)
77 PF02037 SAP: SAP domain; Int 28.4 1.2E+02 0.0026 20.8 3.9 26 414-439 5-35 (35)
78 COG3109 ProQ Activator of osmo 28.3 2.4E+02 0.0052 27.1 7.1 36 587-622 40-75 (208)
79 KOG0498 K+-channel ERG and rel 27.7 4.1E+02 0.0089 31.8 10.6 43 456-498 371-418 (727)
80 PRK04190 glucose-6-phosphate i 27.7 2.1E+02 0.0046 28.1 7.1 51 497-550 71-131 (191)
81 TIGR03404 bicupin_oxalic bicup 24.8 1.6E+02 0.0035 32.1 6.4 51 497-550 70-121 (367)
82 PF00520 Ion_trans: Ion transp 24.2 4.9E+02 0.011 24.3 9.2 24 132-155 30-53 (200)
83 COG5559 Uncharacterized conser 23.5 73 0.0016 24.7 2.3 19 452-470 5-23 (65)
84 PRK08156 type III secretion sy 23.2 2.4E+02 0.0053 30.7 7.2 66 372-437 169-234 (361)
85 COG4016 Uncharacterized protei 23.1 39 0.00084 30.8 0.9 11 696-706 62-72 (165)
86 TIGR03404 bicupin_oxalic bicup 22.9 1.8E+02 0.004 31.8 6.3 51 496-549 247-299 (367)
87 COG4792 EscU Type III secretor 22.8 4.4E+02 0.0094 27.8 8.4 76 356-437 164-240 (349)
88 PF12973 Cupin_7: ChrR Cupin-l 22.6 1.8E+02 0.004 24.4 5.0 64 495-583 25-88 (91)
89 KOG0500 Cyclic nucleotide-gate 22.0 1.2E+03 0.026 26.5 13.5 134 372-534 180-358 (536)
90 PRK06771 hypothetical protein; 21.8 5E+02 0.011 22.3 7.2 47 391-437 15-61 (93)
91 PF06249 EutQ: Ethanolamine ut 21.8 2.1E+02 0.0045 27.1 5.5 50 514-584 95-144 (152)
92 PRK09108 type III secretion sy 21.6 2.1E+02 0.0046 31.1 6.4 65 373-437 177-241 (353)
93 PHA02909 hypothetical protein; 21.4 90 0.002 23.8 2.4 40 360-402 14-53 (72)
94 TIGR01404 FlhB_rel_III type II 21.2 2.8E+02 0.006 30.0 7.2 66 372-437 173-238 (342)
95 PF14377 DUF4414: Domain of un 20.6 1.7E+02 0.0036 25.9 4.5 69 426-494 8-104 (108)
96 PRK11171 hypothetical protein; 20.4 2.1E+02 0.0046 29.7 5.9 49 495-550 185-234 (266)
97 COG1480 Predicted membrane-ass 20.2 6.8E+02 0.015 29.6 10.2 42 482-523 222-264 (700)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-112 Score=949.70 Aligned_cols=574 Identities=52% Similarity=0.880 Sum_probs=517.2
Q ss_pred CceeCCCChHHHHHHHHHHHHHHHHHHhhhhhceeeeecCCcceeecCccchhHHHHHHHHHHHHHHHHHHHhcceeEEc
Q 005197 81 KKVLDPQGAFLQKWNKIFVLSCVIAVSLDPLFFYVPVINGDRKCVDLDKKMETTASVLRSFTDIFYIFHIILQFRTGFIA 160 (709)
Q Consensus 81 ~~ii~P~s~~~~~W~~~~~i~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~di~f~~Di~l~f~t~y~~ 160 (709)
++||+|+|++++.||++++++|+|+++++|++||++..++...| +|..+...++++++++|+||++||+++|+|||++
T Consensus 67 ~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~ 144 (727)
T KOG0498|consen 67 KWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVD 144 (727)
T ss_pred ceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEEC
Confidence 77999999999999999999999999999999999999999999 7889999999999999999999999999999999
Q ss_pred CCCcccCCCeEecCHHHHHHHHhhhhHHHHHHhhCChhhhhhheeecCCCCcchhcc-hhhHHHHHHHhhhhhhhhhhHh
Q 005197 161 PSSRVFGRGVLVEDTWLIAKKYMSSHFLVDILAVLPLPQVVILIIIPNMGGSEVVNT-KNLLKFVVLFQYVPRFLRIYPL 239 (709)
Q Consensus 161 ~~~~~~~~g~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~-~~~Lr~i~l~~~l~Rl~ri~~l 239 (709)
++|+ ++|.||++||+||+++||++|++|++|++++++|.++ ++..... ...|..+.++||++||.|++++
T Consensus 145 ~~s~-----elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~----~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l 215 (727)
T KOG0498|consen 145 PSSY-----ELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI----GSTSLALESTILVGILLLQRLPRLRRVIPL 215 (727)
T ss_pred CCCc-----eeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee----cccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9973 7999999999999999999999999999999998876 2222222 3367778888999999999999
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhchhhccccccCCCCccccccCCCccccccccccCCC
Q 005197 240 YKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGASWYLFSIERETTCWKGHCKMDNGCKLYCDDGQGNNAFLGDFCPIQ 319 (709)
Q Consensus 240 ~~~i~~~~~~~~~~~~~~~~~~ll~~~l~~H~~ac~wy~i~~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~Wl~~~~~~~ 319 (709)
+.++++..+++.+++|+++++++++|||++||+||+||+++.++.+.||+++ +|+...+...
T Consensus 216 ~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~------------------tw~~~l~~~~ 277 (727)
T KOG0498|consen 216 FARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA------------------TWLGSLGRLL 277 (727)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc------------------cccccccccc
Confidence 9999999999999999999999999999999999999999999999999753 4555432111
Q ss_pred CCCCCcccchhhhhhhhcCcccCCChhhHHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005197 320 PADTKLFNFGIFLGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQT 399 (709)
Q Consensus 320 ~~~~~~~~~g~~~~~l~~~~~~~~~~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~ 399 (709)
...+..|+||+|.+ +.+|++|+|||++||||+|||+.+|+|..|++|+|++|++|+++||++||||++
T Consensus 278 ~~~~~~~~fg~~s~------------~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~ 345 (727)
T KOG0498|consen 278 SCYNLSFTFGIYSL------------ALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTA 345 (727)
T ss_pred ccCcccccccchhH------------HHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHH
Confidence 12333477887655 459999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhhHHHHHHHHHHhHhccch
Q 005197 400 YLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLALLMRVP 479 (709)
Q Consensus 400 ~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rv~~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~ 479 (709)
++|+.+.+.++|+.|++|+++||++++||++||+||++|+||+|..++|+||+++|++||++||++|++|+|.++++++|
T Consensus 346 ~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vp 425 (727)
T KOG0498|consen 346 LLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVP 425 (727)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcC
Q 005197 480 LFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALD 559 (709)
Q Consensus 480 lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~ 559 (709)
+|+++|++.+++|+.++++..|+|||+|++|||++++||||.+|.+++.+.++|.+ .++..+++||+|||+.+.|+++
T Consensus 426 LF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~--~~~~~L~~Gd~~GeEl~~~~~~ 503 (727)
T KOG0498|consen 426 LFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGF--FVVAILGPGDFFGEELLTWCLD 503 (727)
T ss_pred hhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCce--EEEEEecCCCccchHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999887744 3489999999999777777774
Q ss_pred CCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005197 560 PQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEESL 639 (709)
Q Consensus 560 ~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~~~r~~~~~~ 639 (709)
.| +++||+|+|.|+++.|++++|+.++++||+++++++++++|+|+++|++|+++++|++|+++.+|+....+
T Consensus 504 -~p------~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~~l 576 (727)
T KOG0498|consen 504 -LP------QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEEEL 576 (727)
T ss_pred -CC------CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccchh
Confidence 22 27799999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred HHHHHHHHHhhhhcCCCCCCccchHhHhHHHHHHHHHhhhcccCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 005197 640 RAEENRLQDALAKAGGSSPSLGATIYASRFAANALRLIRRNSTRKTRVPERVPPMLLQKPAEPDFTVEE 708 (709)
Q Consensus 640 ~~~eery~~~~~~~p~~~~~~~~~~iASr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (709)
...++.-. .-...++..+.+.....|+++++++.+.++.++ ++.++...+..+|||+||||+.++
T Consensus 577 ~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~f~~~~ 641 (727)
T KOG0498|consen 577 ALEEEESA-IRGDDRGSKSLLRAGILASRFAANGRPPLHTAA---SRGSSDCALLLLQKPADPDFSDAE 641 (727)
T ss_pred hhhcchhh-hccccccchhhhhcccccccccccCCCcccccc---ccCccccccccCCCCCCCCccccc
Confidence 66533221 112555666788899999999999999888774 334566678999999999999654
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=5.4e-68 Score=632.13 Aligned_cols=475 Identities=20% Similarity=0.351 Sum_probs=389.6
Q ss_pred hhhhhhhcccccccccccccccc-CCCCceeCCCChHHHHHHHHHHHHHHHHHHhhhhhceeeeecCCcceeecCccchh
Q 005197 55 ERFKRIKRTLKYCSFNSFVNKGL-GSGKKVLDPQGAFLQKWNKIFVLSCVIAVSLDPLFFYVPVINGDRKCVDLDKKMET 133 (709)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ii~P~s~~~~~W~~~~~i~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~ 133 (709)
..+.++++.+........+++.. +..++||+|.++++++||.+++++++|+++++|+.+++. + .....
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~--~---------~~~~~ 92 (823)
T PLN03192 24 LSLRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFL--N---------ASPKR 92 (823)
T ss_pred eehhhcchhhccccCCCccccCccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHee--C---------CCCCC
Confidence 34455555444432223333333 444999999999999999999999999999999996542 1 11123
Q ss_pred HHHHHHHHHHHHHHHHHHHhcceeEEcCCCcccCCCeEecCHHHHHHHHhhhhHHHHHHhhCChhhhhhheeecCCCCcc
Q 005197 134 TASVLRSFTDIFYIFHIILQFRTGFIAPSSRVFGRGVLVEDTWLIAKKYMSSHFLVDILAVLPLPQVVILIIIPNMGGSE 213 (709)
Q Consensus 134 ~~~~~~~~~di~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~ 213 (709)
.+.+++.++|++|++||+++|+|||+++. .|.+|.||++|++||+++||++|++|++|++.+..... .. ..
T Consensus 93 ~~~~~d~i~~~~F~iDi~l~f~~ay~d~~-----~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~-~~---~~ 163 (823)
T PLN03192 93 GLEIADNVVDLFFAVDIVLTFFVAYIDPR-----TQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLIT-GT---VK 163 (823)
T ss_pred CeeeHHHHHHHHHHHHHHhheeEEEEeCC-----CcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhc-CC---cc
Confidence 46789999999999999999999999986 48899999999999999999999999999987654221 11 11
Q ss_pred hhcchhhHHHHHHHhhhhhhhhhhHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhchhhcccccc
Q 005197 214 VVNTKNLLKFVVLFQYVPRFLRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGASWYLFSIERETTCWKGHCK 293 (709)
Q Consensus 214 ~~~~~~~Lr~i~l~~~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~ll~~~l~~H~~ac~wy~i~~~~~~~~w~~~~~ 293 (709)
.....++|+++| +.|+.|+.+++..+++... ..+.|...+..+++.++++||+||+||+++....
T Consensus 164 ~~~~~~~l~llr----l~Rl~ri~~~~~~le~~~~--~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~--------- 228 (823)
T PLN03192 164 LNLSYSLLGLLR----FWRLRRVKQLFTRLEKDIR--FSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYP--------- 228 (823)
T ss_pred chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------
Confidence 111123333333 3455556666666554433 2234555555555566799999999999984211
Q ss_pred CCCCccccccCCCccccccccccCCCCCCCCcccchhhhhhhhcCcccCCChhhHHHHHHHHHHhhccccCCCCCCCCch
Q 005197 294 MDNGCKLYCDDGQGNNAFLGDFCPIQPADTKLFNFGIFLGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQNLETSTYV 373 (709)
Q Consensus 294 ~~~~c~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~Y~~slyw~l~tlttvGygd~~~~~~ 373 (709)
..+.+|+....+ + ..+.+++.+|++|+||+++|||||||||++|.|.
T Consensus 229 ------------~~~~~Wi~~~~~---------~------------~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~ 275 (823)
T PLN03192 229 ------------HQGKTWIGAVIP---------N------------FRETSLWIRYISAIYWSITTMTTVGYGDLHAVNT 275 (823)
T ss_pred ------------CCCCchHHHhhh---------c------------cccCcHHHHHHHHHHHHHHHHhhccCCCcCCCcc
Confidence 234688854110 1 2356899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhcCCCHHH
Q 005197 374 WEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEEN 453 (709)
Q Consensus 374 ~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rv~~y~~y~w~~~~~~~e~~ 453 (709)
.|++|++++|++|+++|||+||+|++++.+.+.+.++|+++++.+++||++++||++|++||++|++|+|+. .+.++++
T Consensus 276 ~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~ 354 (823)
T PLN03192 276 IEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQ 354 (823)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 4688999
Q ss_pred HHhhCChhhHHHHHHHHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCC
Q 005197 454 LLCNLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGG 533 (709)
Q Consensus 454 ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g 533 (709)
++++||++||.+|+.+++.+.++++++|++++++++.+++..++++.|+|||.|+.+||+++++|||.+|.|+++..++|
T Consensus 355 ~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~ 434 (823)
T PLN03192 355 LIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGE 434 (823)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred ceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 005197 534 RTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFR 609 (709)
Q Consensus 534 ~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r 609 (709)
++.+ +..+++|++|||.+++ .+.++ +++++|.++|+++.|++++|.++++++|+.....++...+
T Consensus 435 ~e~~--l~~l~~Gd~FGE~~~l---~~~p~------~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~ 499 (823)
T PLN03192 435 KERV--VGTLGCGDIFGEVGAL---CCRPQ------SFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQ 499 (823)
T ss_pred ccee--eEEccCCCEecchHHh---cCCCC------CCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7766 7899999999999984 44443 7799999999999999999999999999988877776655
No 3
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-66 Score=543.67 Aligned_cols=513 Identities=21% Similarity=0.321 Sum_probs=419.9
Q ss_pred CceeCCCChHHHHHHHHHHHHHHHHHHhhhhhceeeeecCCcceeecCccchhHHHHHHHHHHHHHHHHHHHhcceeEEc
Q 005197 81 KKVLDPQGAFLQKWNKIFVLSCVIAVSLDPLFFYVPVINGDRKCVDLDKKMETTASVLRSFTDIFYIFHIILQFRTGFIA 160 (709)
Q Consensus 81 ~~ii~P~s~~~~~W~~~~~i~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~di~f~~Di~l~f~t~y~~ 160 (709)
+.||--...|+..||++++++.+|+++++|+-++|--- . .....|.+++.++|++|++||+++|+|.|+.
T Consensus 207 PHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk--~--------~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVG 276 (971)
T KOG0501|consen 207 PHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNK--Q--------RNNVSWLVVDSIVDVIFFVDIVLNFHTTFVG 276 (971)
T ss_pred CeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeeccc--c--------cCceeEEEecchhhhhhhhhhhhhcceeeec
Confidence 77999999999999999999999999999998543221 1 1235677899999999999999999999999
Q ss_pred CCCcccCCCeEecCHHHHHHHHhhhhHHHHHHhhCChhhhhhheeecCCCCcchhcchhhHHHHHHHhhhhhhhhhhHhH
Q 005197 161 PSSRVFGRGVLVEDTWLIAKKYMSSHFLVDILAVLPLPQVVILIIIPNMGGSEVVNTKNLLKFVVLFQYVPRFLRIYPLY 240 (709)
Q Consensus 161 ~~~~~~~~g~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~Lr~i~l~~~l~Rl~ri~~l~ 240 (709)
|- ||+|.||+.|..+|+|+||+||++|++|++.+..+...+ ..+-.....|+ +.||+|+.|+.
T Consensus 277 Pg------GEVvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~d----egI~SLFSaLK-------VVRLLRLGRVa 339 (971)
T KOG0501|consen 277 PG------GEVVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDD----EGIGSLFSALK-------VVRLLRLGRVA 339 (971)
T ss_pred CC------CceecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhccc----ccHHHHHHHHH-------HHHHHHHHHHH
Confidence 95 999999999999999999999999999999887653322 12222334455 45777888888
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhchhhccccccCCCCccccccCCCccccccccccCCCC
Q 005197 241 KEVTRTSGILTETAWAGAAFNLFLYMLASHVLGASWYLFSIERETTCWKGHCKMDNGCKLYCDDGQGNNAFLGDFCPIQP 320 (709)
Q Consensus 241 ~~i~~~~~~~~~~~~~~~~~~ll~~~l~~H~~ac~wy~i~~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~Wl~~~~~~~~ 320 (709)
+++.++.. +..+..+..+..|+|++||+||+||.++..+--+ .-.+....++|+.... +
T Consensus 340 RKLD~YlE----YGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~--------------~~~n~i~~dsWL~kLa---~ 398 (971)
T KOG0501|consen 340 RKLDHYLE----YGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRD--------------EMDNTIQPDSWLWKLA---N 398 (971)
T ss_pred HHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHhheeccchheec--------------ccccccccchHHHHHH---h
Confidence 87776643 2233344555678999999999999999633210 0011245678986654 3
Q ss_pred CCCCcccchhhhhhhhcCcc-cCCChhhHHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005197 321 ADTKLFNFGIFLGALESGIV-ESTYFPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQT 399 (709)
Q Consensus 321 ~~~~~~~~g~~~~~l~~~~~-~~~~~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~ 399 (709)
+.+.+|+|.. -..|.+ ..++--..|+.|+||..+.|||||+|++.|.+..|++|++.+|++|.++||.++|++++
T Consensus 399 ~~~tpY~~~~----s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTT 474 (971)
T KOG0501|consen 399 DIGTPYNYNL----SNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTT 474 (971)
T ss_pred hcCCCceecc----CCCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4567777751 112222 34667788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhhHHHHHHHHHHhHhccch
Q 005197 400 YLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLALLMRVP 479 (709)
Q Consensus 400 ~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rv~~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~ 479 (709)
|+|+++.....|.+.++.+.+||+-.++|+.|.+||.+|.--.|..++|+|.+++|.-+|+++|.+|+.|+.......+|
T Consensus 475 I~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHp 554 (971)
T KOG0501|consen 475 IIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHP 554 (971)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcC
Q 005197 480 LFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALD 559 (709)
Q Consensus 480 lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~ 559 (709)
.|+-.++..+++|+..++..+..|||.|++.||..|.++||++|.+++.+.++- +++++.||+||+.- |.-.
T Consensus 555 aFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDEV------VAILGKGDVFGD~F--WK~~ 626 (971)
T KOG0501|consen 555 AFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDEV------VAILGKGDVFGDEF--WKEN 626 (971)
T ss_pred ceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecCcE------EEEeecCccchhHH--hhhh
Confidence 999999999999999999999999999999999999999999999999885542 79999999999975 3322
Q ss_pred CCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005197 560 PQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEESL 639 (709)
Q Consensus 560 ~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~~~r~~~~~~ 639 (709)
.+..+.++++|+|.|.+..|.++.+.++++-|..++...-+... ..-++-+|...||++...
T Consensus 627 -----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl~-------------LTyNLr~RiiFRKvaDVK 688 (971)
T KOG0501|consen 627 -----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNLT-------------LTYNLRHRIIFRKVADVK 688 (971)
T ss_pred -----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhcee-------------eEeeccceeeeeehhhhh
Confidence 12236789999999999999999999999877766543222211 123466788899999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCccchHhHhHHHH
Q 005197 640 RAEENRLQDALAKAGGSSPSLGATIYASRFAA 671 (709)
Q Consensus 640 ~~~eery~~~~~~~p~~~~~~~~~~iASr~~~ 671 (709)
+++|+|.+.--+..-.+.+..|.+-+.+||..
T Consensus 689 rEkE~~~krKNE~~L~lp~DHpvRklf~rfr~ 720 (971)
T KOG0501|consen 689 REKELRAKRKNEPKLTLPNDHPVRKLFQRFRQ 720 (971)
T ss_pred hhHHHHHhhcCCCCCCCCCCchHHHHHHHHhh
Confidence 99998854432222334467888888888854
No 4
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-61 Score=501.28 Aligned_cols=427 Identities=25% Similarity=0.413 Sum_probs=359.3
Q ss_pred HHHHHHHHhhhhhceeeeecCCcceeecCccchhHHHHHHHHHHHHHHHHHHHhcceeEEcCCCcccCCCeEecCHHHHH
Q 005197 100 LSCVIAVSLDPLFFYVPVINGDRKCVDLDKKMETTASVLRSFTDIFYIFHIILQFRTGFIAPSSRVFGRGVLVEDTWLIA 179 (709)
Q Consensus 100 i~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~di~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia 179 (709)
+.++|++++.+..+.|+.++ ......|..+++++|++|++||++++||+|++ +|.+|.|-.+..
T Consensus 5 ~~vLYN~~~li~r~~F~di~---------~~y~~~wl~ld~~~D~vyllDi~v~~R~gyle-------qGllV~~~~Kl~ 68 (536)
T KOG0500|consen 5 LGVLYNMIVLIVRAAFDDIQ---------SSYLENWLPLDYLFDFVYLLDIIVRSRTGYLE-------QGLLVKDTSKLR 68 (536)
T ss_pred EehHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh-------cCeeehhhHHHH
Confidence 45788888888876666552 23346788999999999999999999999998 699999999999
Q ss_pred HHHhhh-hHHHHHHhhCChhhhhhheeecCCCCcchhcchhhHHHHHHHhhhhhhhhhhHhHHHHHhhhchhHHHHHHHH
Q 005197 180 KKYMSS-HFLVDILAVLPLPQVVILIIIPNMGGSEVVNTKNLLKFVVLFQYVPRFLRIYPLYKEVTRTSGILTETAWAGA 258 (709)
Q Consensus 180 ~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~Lr~i~l~~~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~ 258 (709)
+||+++ .|.+|++|++|+++++++. ++. ...| +.||+|++|++..+.++.+--.... +..
T Consensus 69 ~hY~~s~~f~lD~l~liP~D~l~~~~------~~~-----~~~r-------~nRllk~yRl~~F~~rTetrT~~Pn-~fr 129 (536)
T KOG0500|consen 69 KHYVHSTQFKLDVLSLIPLDLLLFKD------GSA-----SLER-------LNRLLKIYRLFEFFDRTETRTTYPN-AFR 129 (536)
T ss_pred HHHHHhhhhhhhhhhhcchhHHhhcC------Ccc-----hHHH-------HHHHHHHHHHHHHHHHhccccCCch-HHH
Confidence 999998 8999999999999988752 111 1233 4567777777777777665322222 223
Q ss_pred HHHHHHHH-HHHHHHHHHHHhHhhhhchhhccccccCCCCccccccCCCccccccccccCCCCCCCCcccchhhhhhhhc
Q 005197 259 AFNLFLYM-LASHVLGASWYLFSIERETTCWKGHCKMDNGCKLYCDDGQGNNAFLGDFCPIQPADTKLFNFGIFLGALES 337 (709)
Q Consensus 259 ~~~ll~~~-l~~H~~ac~wy~i~~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~g~~~~~l~~ 337 (709)
+.+|+.+. +++||.||+||+++... +.+.++|....- +++.|. +.
T Consensus 130 i~~lv~~~~ilfHWNaClYf~iS~~~---------------------g~~~d~wvY~~i-----~d~~~~-----~c--- 175 (536)
T KOG0500|consen 130 ISKLVHYCLILFHWNACLYFLISKAI---------------------GFTTDDWVYPKI-----NDPEFA-----TC--- 175 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhHhc---------------------CccccccccCCc-----cCcccc-----cc---
Confidence 55666665 58999999999999631 145566875421 111110 00
Q ss_pred CcccCCChhhHHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 005197 338 GIVESTYFPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRD 417 (709)
Q Consensus 338 ~~~~~~~~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~e~~~k~~~ 417 (709)
...++..+|++|+||+..||||+|. ..+|.+..|.+|.|+-.++|+++||.++|++++++.+++....||+.+|+.
T Consensus 176 ---~~~n~~ReY~~S~YWStLTlTTiGe-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDG 251 (536)
T KOG0500|consen 176 ---DAGNLTREYLYSLYWSTLTLTTIGE-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDG 251 (536)
T ss_pred ---chhHHHHHHHHHHHHHhhhhhhccC-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHH
Confidence 1245889999999999999999995 567889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhhHHHHHHHHHHhHhccchhhccCcHHHHHHHHhhcc
Q 005197 418 AEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLK 497 (709)
Q Consensus 418 ~~~~m~~~~lp~~L~~rv~~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~ 497 (709)
+++||+.|++|..|+.||.+||.|.|.+.+-.||+++++.||+.|+.+|+.+++.+.|+++++|+++.+.++.++...++
T Consensus 252 iK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk 331 (536)
T KOG0500|consen 252 IKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLK 331 (536)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEec
Q 005197 498 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALT 577 (709)
Q Consensus 498 ~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~ 577 (709)
++.|.|||+|++.||.+.+||+|.+|.+++...++++. ...+++|++|||.+++ +..+.. +...|+++++++.
T Consensus 332 ~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~----~~~L~~G~~FGEisIl-ni~g~~--~gNRRtanvrSvG 404 (536)
T KOG0500|consen 332 PQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTV----FVTLKAGSVFGEISIL-NIKGNK--NGNRRTANVRSVG 404 (536)
T ss_pred ceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEE----EEEecCCceeeeeEEE-EEcCcc--cCCcceeeeeeec
Confidence 99999999999999999999999999999998777654 6799999999999985 344432 3456899999999
Q ss_pred cceeeeeCHHHHHHHHHHhHHHHHHHHHH
Q 005197 578 EVEAFALMADDLKFVASQFRRLHSKQLRH 606 (709)
Q Consensus 578 ~~~vl~L~~~~f~~l~~~~p~l~~~~l~~ 606 (709)
.+.+++|+++|+.+++++||+-...+++.
T Consensus 405 YSDlfvLskdDl~~aL~eYP~a~~~L~~k 433 (536)
T KOG0500|consen 405 YSDLFVLSKDDLWEALSEYPDARKRLEEK 433 (536)
T ss_pred cceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999977666543
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-57 Score=475.36 Aligned_cols=450 Identities=23% Similarity=0.393 Sum_probs=378.0
Q ss_pred hhhhhhccccccccccccccccCCC--CceeCCCC-hHHHHHHHHHHHHHHHHHHhhhhhceeeeecCCcceeecCccch
Q 005197 56 RFKRIKRTLKYCSFNSFVNKGLGSG--KKVLDPQG-AFLQKWNKIFVLSCVIAVSLDPLFFYVPVINGDRKCVDLDKKME 132 (709)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~ii~P~s-~~~~~W~~~~~i~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~ 132 (709)
.....++.+.+.+.+...-+.-+.. +..|||++ .+...|-.++.++..|++|++|+...+|+.+..| .
T Consensus 190 ~~~h~g~l~~~~~p~~~~~~~c~~~~~~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN---------~ 260 (815)
T KOG0499|consen 190 LMEHYGRLLRSKSPTMPLTEYCKRIKLPNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADN---------I 260 (815)
T ss_pred chhhHHHHHhccCCCCcHHHHHhhcCCCcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcccccc---------c
Confidence 3556677666665555544444433 88999999 9999999999999999999999999999996554 3
Q ss_pred hHHHHHHHHHHHHHHHHHH-HhcceeEEcCCCcccCCCeEecCHHHHHHHHhhh-hHHHHHHhhCChhhhhhheeecCCC
Q 005197 133 TTASVLRSFTDIFYIFHII-LQFRTGFIAPSSRVFGRGVLVEDTWLIAKKYMSS-HFLVDILAVLPLPQVVILIIIPNMG 210 (709)
Q Consensus 133 ~~~~~~~~~~di~f~~Di~-l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~ 210 (709)
..|.+.+++||++|++||+ ++=|.-|+- .|.+|.|.+...+||+++ .|-+|++|++|+++++.+. +
T Consensus 261 ~~Wli~Dy~cDiIYllDmlf~q~Rl~fvr-------gG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~-----G 328 (815)
T KOG0499|consen 261 HYWLIADYICDIIYLLDMLFIQPRLQFVR-------GGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFF-----G 328 (815)
T ss_pred hhhhhHHHHhhHHHHHHHhhhhhhheeee-------CceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHh-----c
Confidence 5788999999999999995 667777765 599999999999999998 8999999999999988642 1
Q ss_pred CcchhcchhhHHHHHHHhhhhhhhhhhHhHHHHHhhhchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHhhhhchhhcc
Q 005197 211 GSEVVNTKNLLKFVVLFQYVPRFLRIYPLYKEVTRTSGILTETAWAGAAFNLFLYM-LASHVLGASWYLFSIERETTCWK 289 (709)
Q Consensus 211 ~~~~~~~~~~Lr~i~l~~~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~ll~~~-l~~H~~ac~wy~i~~~~~~~~w~ 289 (709)
..+ ++| ++|++++-.++........++.+ +++-.+..-+.|| .++|+.+|+||+.+..+
T Consensus 329 ~~p------~wR-------~~R~lK~~sF~e~~~~Le~i~s~-~y~~RV~rT~~YmlyilHinacvYY~~Sayq------ 388 (815)
T KOG0499|consen 329 FNP------MWR-------ANRMLKYTSFFEFNHHLESIMSK-AYIYRVIRTTGYLLYILHINACVYYWASAYQ------ 388 (815)
T ss_pred cch------hhh-------hhhHHHHHHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHhhhHHHHHHHHhhc------
Confidence 222 333 34444444333222222222222 3333333444555 48899999999988532
Q ss_pred ccccCCCCccccccCCCccccccccccCCCCCCCCcccchhhhhhhhcCcccCCChhhHHHHHHHHHHhhccccCCCCCC
Q 005197 290 GHCKMDNGCKLYCDDGQGNNAFLGDFCPIQPADTKLFNFGIFLGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQNLET 369 (709)
Q Consensus 290 ~~~~~~~~c~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~Y~~slyw~l~tlttvGygd~~ 369 (709)
+.+.+.|+.+. -...|++|+|||+.|++|+| |.-.
T Consensus 389 ---------------glG~~rWVydg-----------------------------~Gn~YiRCyyfa~kt~~tiG-~~P~ 423 (815)
T KOG0499|consen 389 ---------------GLGTTRWVYDG-----------------------------EGNEYIRCYYFAVKTLITIG-GLPE 423 (815)
T ss_pred ---------------ccccceeEEcC-----------------------------CCCceeeehhhHHHHHHHhc-CCCC
Confidence 14567888531 13469999999999999999 8899
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhcCC
Q 005197 370 STYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGV 449 (709)
Q Consensus 370 ~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rv~~y~~y~w~~~~~~ 449 (709)
|++..|++|..+-.+.|+++||.+||.|-.++...+...++||..|++.-.||+..+||++.+.||+.+|+|.|..++..
T Consensus 424 P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~L 503 (815)
T KOG0499|consen 424 PQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRML 503 (815)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhCChhhHHHHHHHHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEE
Q 005197 450 DEENLLCNLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT 529 (709)
Q Consensus 450 ~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~ 529 (709)
||.+++..||..|+.+++...+...+.++.+|++++.+.+..++.+++.+.|-|||+|++.||.+.+||+|..|+|.+..
T Consensus 504 DEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlG 583 (815)
T KOG0499|consen 504 DESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLG 583 (815)
T ss_pred cHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHH
Q 005197 530 TNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLH 600 (709)
Q Consensus 530 ~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~ 600 (709)
..+|+. + +..|++|++|||++++ +..+..+ ||++|+|...|.++.|+++|+.+++..||+-.
T Consensus 584 Gp~~~~-V--l~tL~~GsVFGEISLL-aigG~nR-----RTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq 645 (815)
T KOG0499|consen 584 GPDGTK-V--LVTLKAGSVFGEISLL-AIGGGNR-----RTANVVAHGFANLFVLDKKDLNEILVHYPDSQ 645 (815)
T ss_pred CCCCCE-E--EEEecccceeeeeeee-eecCCCc-----cchhhhhcccceeeEecHhHHHHHHHhCccHH
Confidence 666653 2 6899999999999986 4444433 79999999999999999999999999999643
No 6
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.71 E-value=8.1e-19 Score=177.25 Aligned_cols=299 Identities=16% Similarity=0.263 Sum_probs=182.3
Q ss_pred CCCcccccccCcccccccccc---ccchhhhhhhccccc-cccccccccccCCC--Ccee-CCCChHHHHHHHHHHHHHH
Q 005197 31 HSGRLRTTINSVPAKFQGGFE---SGSERFKRIKRTLKY-CSFNSFVNKGLGSG--KKVL-DPQGAFLQKWNKIFVLSCV 103 (709)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~ii-~P~s~~~~~W~~~~~i~~~ 103 (709)
++|++|++..++.+.|...++ .|++.++.++...+. ....+.++++.-.. |-.+ .|.|.--..--.++.++++
T Consensus 122 SGGRlrRPvnVPlDiF~eEirFyqlG~eame~FredEG~~~~eE~plP~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVI 201 (507)
T KOG1545|consen 122 SGGRLRRPVNVPLDIFLEEIRFYQLGDEAMERFREDEGFIKPEERPLPRNEFQRQVWLLFEYPESSGPARIIAIVSVLVI 201 (507)
T ss_pred cCceecCCccccHHHHHHHHHHHHhhHHHHHHHHhhcCCCCcccccCCcchHHhhhhheeecccccCCeeeeeehhHHHH
Confidence 478999999999999988875 899999999987665 33345555544333 3333 7777765555555555555
Q ss_pred HHHHhhhhhceeeeecCCccee----------------e------cCccchhHHHHHHHHHHHHHHHHHHHhcceeEEcC
Q 005197 104 IAVSLDPLFFYVPVINGDRKCV----------------D------LDKKMETTASVLRSFTDIFYIFHIILQFRTGFIAP 161 (709)
Q Consensus 104 ~~~~~~P~~~~~~~~~~~~~c~----------------~------~~~~~~~~~~~~~~~~di~f~~Di~l~f~t~y~~~ 161 (709)
+..+++-+.-.+|...+.+.-- + .+......+++++++|-++|-++++++|..+ |
T Consensus 202 liSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~~~~~~~~~~f~dPFFiVEt~CIiWFtfEllvRf~aC---P 278 (507)
T KOG1545|consen 202 LISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGPELLDLGDTKFTDPFFIVETLCIIWFTFELLVRFFAC---P 278 (507)
T ss_pred HHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCcccccccccccCCchHhHHHHHHHHHhHHHHHHHhcC---c
Confidence 5555554555666653331100 0 0112345689999999999999999999866 2
Q ss_pred CCcccCCCeEecCHHHHHHHHhhhhHHHHHHhhCChhhhhhheeecCCCC---cchhcchhhHHHHHHHhhhhhhhhhhH
Q 005197 162 SSRVFGRGVLVEDTWLIAKKYMSSHFLVDILAVLPLPQVVILIIIPNMGG---SEVVNTKNLLKFVVLFQYVPRFLRIYP 238 (709)
Q Consensus 162 ~~~~~~~g~lV~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~---~~~~~~~~~Lr~i~l~~~l~Rl~ri~~ 238 (709)
+ ....+++-+ -+||++|++|+..-+.........+ ....-...+||++| +.|++|+++
T Consensus 279 s------------K~~Ff~nim---NiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViR----LVRVFRIFK 339 (507)
T KOG1545|consen 279 S------------KATFFRNIM---NIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIR----LVRVFRIFK 339 (507)
T ss_pred c------------HHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHH----HHHHhhhee
Confidence 2 112333333 3999999999975544322222111 12222345566554 446666666
Q ss_pred hHHHHHhhhchhHHHHHHHH-HHHHHHH-HH-HHHHHHHHHHhHhhhhchhhccccccCCCCccccccCCCccccccccc
Q 005197 239 LYKEVTRTSGILTETAWAGA-AFNLFLY-ML-ASHVLGASWYLFSIERETTCWKGHCKMDNGCKLYCDDGQGNNAFLGDF 315 (709)
Q Consensus 239 l~~~i~~~~~~~~~~~~~~~-~~~ll~~-~l-~~H~~ac~wy~i~~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~Wl~~~ 315 (709)
|.+.-+ -..++-+|--+.+ -+-|++| ++ ..-+++...|+.-.+
T Consensus 340 LSRHSk-GLQILGqTl~aSmrElgLLIFFlfIgviLFsSavYFAEad--------------------------------- 385 (507)
T KOG1545|consen 340 LSRHSK-GLQILGQTLRASMRELGLLIFFLFIGVILFSSAVYFAEAD--------------------------------- 385 (507)
T ss_pred eccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeecC---------------------------------
Confidence 654322 1112222211111 1223333 32 222333333332111
Q ss_pred cCCCCCCCCcccchhhhhhhhcCcccCCChhhHHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 005197 316 CPIQPADTKLFNFGIFLGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIG 395 (709)
Q Consensus 316 ~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig 395 (709)
+.++.+.....+||||++|||||||||..|.+.+.+++..+++|.|++-.|+.+.
T Consensus 386 -------------------------e~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVP 440 (507)
T KOG1545|consen 386 -------------------------EPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVP 440 (507)
T ss_pred -------------------------CCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEeccccc
Confidence 1223344556799999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHhhHHHHH
Q 005197 396 NMQTYLQSTTTRLEE 410 (709)
Q Consensus 396 ~~~~~l~~~~~~~~e 410 (709)
.+.+-+.-...+..|
T Consensus 441 VIVsNFnyFYhrEte 455 (507)
T KOG1545|consen 441 VIVSNFNYFYHRETE 455 (507)
T ss_pred EEEecccceeecccc
Confidence 777665554444443
No 7
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.68 E-value=9.4e-16 Score=163.48 Aligned_cols=195 Identities=17% Similarity=0.297 Sum_probs=124.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcceeEEcCCCcccCCCeEecCHHHHHHHHhhh-hHHHHHHhhCChhhhhhheeecCCC
Q 005197 132 ETTASVLRSFTDIFYIFHIILQFRTGFIAPSSRVFGRGVLVEDTWLIAKKYMSS-HFLVDILAVLPLPQVVILIIIPNMG 210 (709)
Q Consensus 132 ~~~~~~~~~~~di~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~ 210 (709)
...+.+++.+|-++|-++++++|..+ |+ ..+++|+ --+||++|++||.+-+........+
T Consensus 239 ~p~l~~vE~vCi~WFT~E~llR~~~~---P~----------------k~~F~k~pLNIIDllAIlPFYielll~~~~~~~ 299 (477)
T KOG3713|consen 239 HPILTYVETVCIAWFTFEYLLRFLVA---PN----------------KLEFFKSPLNIIDLLAILPFYLELLLTLFGGES 299 (477)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHcC---ch----------------HHHHHhCcchHHHHHHHHHHHHHHHHHHhccch
Confidence 34688999999999999999999754 22 3455555 5599999999997654332211101
Q ss_pred CcchhcchhhHHHHHHHhhhhhhhhhhHhHHHHHhhhchhHHHHH----HHHHHHHHHHH-HHHHHHHHHHHhHhhhhch
Q 005197 211 GSEVVNTKNLLKFVVLFQYVPRFLRIYPLYKEVTRTSGILTETAW----AGAAFNLFLYM-LASHVLGASWYLFSIERET 285 (709)
Q Consensus 211 ~~~~~~~~~~Lr~i~l~~~l~Rl~ri~~l~~~i~~~~~~~~~~~~----~~~~~~ll~~~-l~~H~~ac~wy~i~~~~~~ 285 (709)
....-+....+|++| +.|++|+++|.++- .|+-+-..- ..-+-.|++|+ +.+-+++.+-|++-.++.+
T Consensus 300 ~~~l~~~~~vvrvlR----~lRI~RI~KLaRhS---~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~ 372 (477)
T KOG3713|consen 300 LKELENAGLVVRVLR----VLRILRIFKLARHS---TGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPD 372 (477)
T ss_pred HHHHhhhhhhHHHHH----HHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 111111113333332 34555555554432 222111111 11122333343 4667788888876532111
Q ss_pred hhccccccCCCCccccccCCCccccccccccCCCCCCCCcccchhhhhhhhcCcccCCChhhHHHHHHHHHHhhccccCC
Q 005197 286 TCWKGHCKMDNGCKLYCDDGQGNNAFLGDFCPIQPADTKLFNFGIFLGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQ 365 (709)
Q Consensus 286 ~~w~~~~~~~~~c~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~Y~~slyw~l~tlttvGy 365 (709)
+.++....|+|||++|||||||
T Consensus 373 ----------------------------------------------------------~~FtSIPa~~WWaiVTMTTVGY 394 (477)
T KOG3713|consen 373 ----------------------------------------------------------TKFTSIPAGFWWAVVTMTTVGY 394 (477)
T ss_pred ----------------------------------------------------------CCCccccchhheeeEEEeeecc
Confidence 1134456799999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 005197 366 NLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEE 410 (709)
Q Consensus 366 gd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~e 410 (709)
||.+|.|...++++..++++|+++.|+.|..|.+-+.......++
T Consensus 395 GDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~ 439 (477)
T KOG3713|consen 395 GDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKA 439 (477)
T ss_pred cCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHH
Confidence 999999999999999999999999999888777766655544443
No 8
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.66 E-value=2e-15 Score=154.54 Aligned_cols=153 Identities=17% Similarity=0.192 Sum_probs=124.7
Q ss_pred HhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeeh
Q 005197 472 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGE 551 (709)
Q Consensus 472 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe 551 (709)
.++++.+++|..++++.++.+....+.+.|++|+.|+++||+++.+|+|.+|.|+++...+|++.+ +..+.+|++||+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~--i~~~~~g~~~g~ 83 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETT--LAILRPVSTFIL 83 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEE--EEEeCCCchhhh
Confidence 468899999999999999999999999999999999999999999999999999998866676665 789999999999
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHH
Q 005197 552 ELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYS 631 (709)
Q Consensus 552 ~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~~ 631 (709)
.++ +...+. .++++|+++|+++.++.++|.+++.++|.+....++...+.+. +..
T Consensus 84 ~~~---~~~~~~------~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~----------------~~~ 138 (236)
T PRK09392 84 AAV---VLDAPY------LMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYR----------------GLV 138 (236)
T ss_pred HHH---hCCCCC------ceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH----------------HHH
Confidence 987 444443 7799999999999999999999999999987766655443222 223
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 005197 632 KKKLEESLRAEENRLQDALA 651 (709)
Q Consensus 632 ~r~~~~~~~~~eery~~~~~ 651 (709)
++.......++++|+..++.
T Consensus 139 ~~~~~~~~~~~~~Rla~~Ll 158 (236)
T PRK09392 139 KSLKNQKLRSSAERLANYLL 158 (236)
T ss_pred HHHHHhhcCCHHHHHHHHHH
Confidence 33333444566666665554
No 9
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.59 E-value=7e-14 Score=140.43 Aligned_cols=116 Identities=17% Similarity=0.264 Sum_probs=100.4
Q ss_pred ccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCeeehhhhhhhcCC
Q 005197 482 EKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELLTWALDP 560 (709)
Q Consensus 482 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~ 560 (709)
+.++++.++.++..++.+.|++|++|+.+|++++.+|+|++|.++++.. .+|++.. +..+++|++||+..++ .+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~---~~ 80 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF---EE 80 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehhhc---cC
Confidence 5689999999999999999999999999999999999999999998874 4677766 7899999999999874 32
Q ss_pred CCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHH
Q 005197 561 QSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHT 607 (709)
Q Consensus 561 ~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~ 607 (709)
.+ .+..+++|.++|+++.+++++|.+++.++|++....++..
T Consensus 81 ~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~ 122 (211)
T PRK11753 81 GQ-----ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQM 122 (211)
T ss_pred CC-----CceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 21 1367899999999999999999999999999876555543
No 10
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.53 E-value=1.6e-13 Score=140.39 Aligned_cols=122 Identities=16% Similarity=0.225 Sum_probs=101.7
Q ss_pred hccchhhccCcHHHHHHHHhhcce-eeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCeeehh
Q 005197 475 LMRVPLFEKMDEQLLDALCDRLKP-VLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEE 552 (709)
Q Consensus 475 L~~v~lF~~ls~~~l~~L~~~l~~-~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~fGe~ 552 (709)
+++.+.|..+++++++.|...... +.|+||+.|+.+||+++++|+|.+|.|+++.. .+|++.+ +.++.+|++||+.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i--~~~~~~gd~~g~~ 92 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQI--TGFHLAGDLVGFD 92 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEE--EEeccCCceeccc
Confidence 455555557999999999988864 68999999999999999999999999999984 5677766 7788999999986
Q ss_pred hhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHH
Q 005197 553 LLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTF 608 (709)
Q Consensus 553 ~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~ 608 (709)
.+ ... . +..+++|+++++++.+++++|++++.++|.+....++.+.
T Consensus 93 ~~---~~~-~------~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~ 138 (235)
T PRK11161 93 AI---GSG-Q------HPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMS 138 (235)
T ss_pred cc---cCC-C------CcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHH
Confidence 54 222 1 1458999999999999999999999999998776666544
No 11
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.48 E-value=6.9e-13 Score=134.86 Aligned_cols=109 Identities=20% Similarity=0.284 Sum_probs=93.3
Q ss_pred HHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEE-ecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCC
Q 005197 489 LDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLP 567 (709)
Q Consensus 489 l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~-~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~ 567 (709)
..++....+.+.|++|++|+.+||+++.+|+|.+|.|+++. ..+|++.+ +..+.||++||+.++ +.+.+.
T Consensus 24 ~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~--~~~~~~g~~~G~~~~---~~~~~~---- 94 (226)
T PRK10402 24 SFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSL--IDFFAAPCFIGEIEL---IDKDHE---- 94 (226)
T ss_pred CHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEee--eeecCCCCeEEeehh---hcCCCC----
Confidence 34577888999999999999999999999999999999987 45677766 789999999999886 344443
Q ss_pred CcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHH
Q 005197 568 ISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTF 608 (709)
Q Consensus 568 ~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~ 608 (709)
+.+++|+++|+++.+++++|..++.++|.+....++...
T Consensus 95 --~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~ 133 (226)
T PRK10402 95 --TKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLS 133 (226)
T ss_pred --CccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHH
Confidence 779999999999999999999999999988776555443
No 12
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.42 E-value=1.7e-12 Score=115.61 Aligned_cols=111 Identities=30% Similarity=0.541 Sum_probs=97.6
Q ss_pred hhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCeeehhhhhhhc
Q 005197 480 LFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELLTWAL 558 (709)
Q Consensus 480 lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~fGe~~l~~~l 558 (709)
+|..++++.+..++..++.+.+.+|++|+.+|++.+.+|+|.+|.++++.. .+|++.. +..+.+|++||+..++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~--- 75 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI--VGFLGPGDLFGELALL--- 75 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEecCCccCcChHHHh---
Confidence 478899999999999999999999999999999999999999999998874 4556655 7899999999999873
Q ss_pred CCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHH
Q 005197 559 DPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHS 601 (709)
Q Consensus 559 ~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~ 601 (709)
...+ +..+++|.++|+++.++.++|.+++.++|.+..
T Consensus 76 ~~~~------~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (115)
T cd00038 76 GNGP------RSATVRALTDSELLVLPRSDFRRLLQEYPELAR 112 (115)
T ss_pred cCCC------CCceEEEcCceEEEEEeHHHHHHHHHHCcHhHH
Confidence 3333 367999999999999999999999999997655
No 13
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.42 E-value=6.2e-13 Score=131.30 Aligned_cols=193 Identities=18% Similarity=0.304 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHhcceeEEcCCCcccCCCeEecCHHHHHHHHhhh-hHHHHHHhhCChhhhhhheeecCCCCcchh
Q 005197 137 VLRSFTDIFYIFHIILQFRTGFIAPSSRVFGRGVLVEDTWLIAKKYMSS-HFLVDILAVLPLPQVVILIIIPNMGGSEVV 215 (709)
Q Consensus 137 ~~~~~~di~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~~~ 215 (709)
+++.+++++|.+|+++++.+... . .++|+++ |.++|+++++|..........+. .+.
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~-----------~-------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~- 58 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGF-----------K-------RRRYFRSWWNWFDFISVIPSIVSVILRSYGS---ASA- 58 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC-----------G--------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS-----HH-
T ss_pred CChHHHHHHHHHHHHHHHHHhcc-----------H-------HHHHhcChhhccccccccccccccccccccc---ccc-
Confidence 46889999999999999997532 1 6789998 78899999999966554322111 000
Q ss_pred cchhhHHHHHHHhhhhhhhhhhHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhchhhccccccCC
Q 005197 216 NTKNLLKFVVLFQYVPRFLRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGASWYLFSIERETTCWKGHCKMD 295 (709)
Q Consensus 216 ~~~~~Lr~i~l~~~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~ll~~~l~~H~~ac~wy~i~~~~~~~~w~~~~~~~ 295 (709)
...+++.++++ +.|++|+.+..+.+.+...... .........+++++++.|++||+++.+.......|+.
T Consensus 59 --~~~~~~~~~l~-~~R~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~------ 128 (200)
T PF00520_consen 59 --QSLLRIFRLLR-LLRLLRLLRRFRSLRRLLRALI-RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCD------ 128 (200)
T ss_dssp --CHCHHHHHHHH-HHHHHHHHHTTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-----------
T ss_pred --cceEEEEEeec-cccccccccccccccccccccc-cccccccccccccccccccccchhheecccccccccc------
Confidence 11223332222 2244444433333333222222 1122233444556678999999999988543332210
Q ss_pred CCccccccCCCccccccccccCCCCCCCCcccchhhhhhhhcCcccCCChhhHHHHHHHHHHhhccccCCCCCCCC----
Q 005197 296 NGCKLYCDDGQGNNAFLGDFCPIQPADTKLFNFGIFLGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQNLETST---- 371 (709)
Q Consensus 296 ~~c~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~Y~~slyw~l~tlttvGygd~~~~---- 371 (709)
.++-.. + .....+..+.|..|+||+++++|+.|+||..+.
T Consensus 129 -------------~~~~~~--------~---------------~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~ 172 (200)
T PF00520_consen 129 -------------PTWDSE--------N---------------DIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSA 172 (200)
T ss_dssp ---------------SS---------------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHT
T ss_pred -------------cccccc--------c---------------ccccccccccccccccccccccccCCccccccccccc
Confidence 000000 0 011234567799999999999999999999987
Q ss_pred -chhHHHHH-HHHHHHHHHHHHHHHHHH
Q 005197 372 -YVWEICFA-VFISISGLVLFSFLIGNM 397 (709)
Q Consensus 372 -~~~E~~~~-i~~~i~G~~~fa~lig~~ 397 (709)
+..+.++. +++.+.+.+++++++|.|
T Consensus 173 ~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 173 RSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 88999998 777777789999999986
No 14
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.41 E-value=7.2e-12 Score=125.29 Aligned_cols=123 Identities=26% Similarity=0.381 Sum_probs=103.3
Q ss_pred ccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEE-ecCCceeeeeeeecCCCCeeehhhh
Q 005197 476 MRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCGEELL 554 (709)
Q Consensus 476 ~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~-~~~g~~~~~~l~~l~~Gd~fGe~~l 554 (709)
...+.|..++.+....+......+.+++|++|+.+||+++.+|+|.+|.++++. ..+|++.+ +..+++||+||+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~fg~~~l 80 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREII--LGFLGPGDFFGELAL 80 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEE--EEEecCCchhhhHHH
Confidence 345666667777778877899999999999999999999999999999999988 45677777 789999999999998
Q ss_pred hhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 005197 555 TWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFR 609 (709)
Q Consensus 555 ~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r 609 (709)
+ ...+ ++++++|+++|+++.+++++|.+++.+.|.+...+++...+
T Consensus 81 ~---~~~~------~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~ 126 (214)
T COG0664 81 L---GGDP------RSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLAR 126 (214)
T ss_pred h---cCCC------ccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 4 3223 37799999999999999999999887788777766665544
No 15
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.37 E-value=6.2e-12 Score=128.18 Aligned_cols=161 Identities=17% Similarity=0.139 Sum_probs=114.4
Q ss_pred HHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEE-ecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCc
Q 005197 491 ALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPIS 569 (709)
Q Consensus 491 ~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~-~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~ 569 (709)
.++.....+.|++|++|+.+||+++++|+|++|.|+++. ..+|++.+ +..+.+||+||+.. ..+ +
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i--~~~~~~Gd~fG~~~------~~~------~ 98 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQI--GAFHLPGDVFGLES------GST------H 98 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCceecccC------CCc------C
Confidence 456677888999999999999999999999999999987 45677766 78899999999532 122 3
Q ss_pred ceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005197 570 TRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEESLRAEENRLQDA 649 (709)
Q Consensus 570 ~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~~~r~~~~~~~~~eery~~~ 649 (709)
.++++|+++|+++.++.++|++++.++|++....++.+.+.+.. ..++.......++++|+..+
T Consensus 99 ~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~----------------~~~~~~~l~~~~~~~Rla~~ 162 (230)
T PRK09391 99 RFTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAGGLRH----------------AQDHMLLLGRKTAMERVAAF 162 (230)
T ss_pred CeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHHHH----------------HHHHHHHHcCCCHHHHHHHH
Confidence 67999999999999999999999999999888777665542222 12233333334555565544
Q ss_pred hhhc-------CCCCCCccchHhHhHHH------HHHHHHhhhcc
Q 005197 650 LAKA-------GGSSPSLGATIYASRFA------ANALRLIRRNS 681 (709)
Q Consensus 650 ~~~~-------p~~~~~~~~~~iASr~~------~~~~~~~~~~~ 681 (709)
+... +.+...++++.+|+.+. +++++.+++.+
T Consensus 163 Ll~l~~~~g~~~~i~i~lt~~~IA~~lGisretlsR~L~~L~~~G 207 (230)
T PRK09391 163 LLEMDERLGGAGMMALPMSRRDIADYLGLTIETVSRALSQLQDRG 207 (230)
T ss_pred HHHHHHHhCCCCEEEecCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 4331 12234566777777664 34444454443
No 16
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.36 E-value=1.3e-11 Score=110.46 Aligned_cols=115 Identities=28% Similarity=0.417 Sum_probs=98.3
Q ss_pred hhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCeeehhhhhhhc
Q 005197 480 LFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELLTWAL 558 (709)
Q Consensus 480 lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~fGe~~l~~~l 558 (709)
+|.+++++.++.++..++.+.+++|++|+++|++++.+|+|.+|.++++.. .+|++.. +..+.+|++||+..++ ..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~g~~~g~~~~~-~~ 77 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQI--LGILGPGDFFGELALL-TN 77 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEE--EEeecCCceechhhhc-cC
Confidence 478899999999999999999999999999999999999999999998875 4555555 7899999999999873 11
Q ss_pred CCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHH
Q 005197 559 DPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQ 603 (709)
Q Consensus 559 ~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~ 603 (709)
.+.+ +..+++|.++|+++.++.+++...+.++|.+..+.
T Consensus 78 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 116 (120)
T smart00100 78 SRRA------ASATAVALELATLLRIDFRDFLQLLQENPQLLLEL 116 (120)
T ss_pred CCcc------cceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHH
Confidence 2222 37799999999999999999999999988765543
No 17
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.33 E-value=1.1e-11 Score=132.81 Aligned_cols=90 Identities=19% Similarity=0.292 Sum_probs=73.7
Q ss_pred ChhhHHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 005197 344 YFPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMA 423 (709)
Q Consensus 344 ~~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~ 423 (709)
+-+..|..++||++.|+||+||||.+|.+...++++..+.++|+.+||+.-|.+++=+.-.- +++.|+ ++|-+
T Consensus 265 ~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKV--Qeq~RQ-----KHf~r 337 (654)
T KOG1419|consen 265 DEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKV--QEQHRQ-----KHFNR 337 (654)
T ss_pred ccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhh--HHHHHH-----HHHHh
Confidence 44667999999999999999999999999999999999999999999999888887664332 223333 26777
Q ss_pred hCCCChhHHHHHHHHHH
Q 005197 424 HRLLPDTLRERIRRYEQ 440 (709)
Q Consensus 424 ~~~lp~~L~~rv~~y~~ 440 (709)
.++.--.|.+-.-+||.
T Consensus 338 rr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 338 RRNPAASLIQCAWRYYA 354 (654)
T ss_pred hcchHHHHHHHHHHHHh
Confidence 77887888888888765
No 18
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.33 E-value=5.6e-12 Score=108.05 Aligned_cols=89 Identities=30% Similarity=0.444 Sum_probs=77.6
Q ss_pred eeeCCCCEEEccCCCCCeEEEEEeeeEEEEEec-CCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEec
Q 005197 499 VLYTEESYIVREGDPVDEMLFIMRGKLLTITTN-GGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALT 577 (709)
Q Consensus 499 ~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~ 577 (709)
+.|++|++|+++|++++.+|||++|.++++..+ +|+..+ +..+.+|++||+.+++ ...+ +..+++|.+
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~--~~~~~~g~~~g~~~~~---~~~~------~~~~~~a~~ 70 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQI--IFFLGPGDIFGEIELL---TGKP------SPFTVIALT 70 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEE--EEEEETTEEESGHHHH---HTSB------BSSEEEESS
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeee--ecceeeeccccceeec---CCCc------cEEEEEEcc
Confidence 689999999999999999999999999998854 454444 7899999999999885 2223 377999999
Q ss_pred cceeeeeCHHHHHHHHHHhHH
Q 005197 578 EVEAFALMADDLKFVASQFRR 598 (709)
Q Consensus 578 ~~~vl~L~~~~f~~l~~~~p~ 598 (709)
+|+++.|++++|.++++++|+
T Consensus 71 ~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 71 DSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp SEEEEEEEHHHHHHHHHHSHH
T ss_pred CEEEEEEeHHHHHHHHHhCcC
Confidence 999999999999999999984
No 19
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.28 E-value=6.5e-11 Score=118.05 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=101.1
Q ss_pred hcceeeeCCCCEEEccCC--CCCeEEEEEeeeEEEEE-ecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcce
Q 005197 495 RLKPVLYTEESYIVREGD--PVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTR 571 (709)
Q Consensus 495 ~l~~~~~~~ge~I~~eGd--~~~~lyfI~~G~v~v~~-~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~ 571 (709)
.++.+.|++|++|+++|| +++.+|+|++|.|+++. ..+|++.+ +..+.|||+||+..++ . .+ +++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~--l~~~~~Gd~~G~~~~~---~-~~------~~~ 72 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALT--LRYVRPGEYFGEEALA---G-AE------RAY 72 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCeechHHhc---C-CC------CCc
Confidence 467889999999999999 77999999999999988 55788877 7899999999997542 2 22 266
Q ss_pred EEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005197 572 TVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEESLRAEENRLQDALA 651 (709)
Q Consensus 572 tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~~~r~~~~~~~~~eery~~~~~ 651 (709)
+++|+++|+++.++.++| +|++....++...+......+. +..........|....+++-++ ++.....
T Consensus 73 ~~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~~~~~----~~~l~~~~~~~Rla~~Ll~l~~-~~~~~~~ 141 (202)
T PRK13918 73 FAEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLARAYES----IYRLVGQRLKNRIAAALLELSD-TPLATQE 141 (202)
T ss_pred eEEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHHHHHHH----HHHHHhCchHHHHHHHHHHHHH-HhCCCCC
Confidence 899999999999999987 4555555555554433332222 2222233333333333333333 2221122
Q ss_pred hcCCCCCCccchHhHhHHH
Q 005197 652 KAGGSSPSLGATIYASRFA 670 (709)
Q Consensus 652 ~~p~~~~~~~~~~iASr~~ 670 (709)
+.+.+...+++..||+-+.
T Consensus 142 ~~~~~~~~~t~~~iA~~lG 160 (202)
T PRK13918 142 DSGETMIYATHDELAAAVG 160 (202)
T ss_pred CCCeEEecCCHHHHHHHhC
Confidence 3444456677777776653
No 20
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.27 E-value=7.3e-11 Score=116.71 Aligned_cols=97 Identities=20% Similarity=0.165 Sum_probs=81.5
Q ss_pred CCEEEccCCCCCeEEEEEeeeEEEEE-ecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceee
Q 005197 504 ESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAF 582 (709)
Q Consensus 504 ge~I~~eGd~~~~lyfI~~G~v~v~~-~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl 582 (709)
|+.|+++||+++.+|+|.+|.|+++. ..+|++.+ +..+++|++||+.+++ .+.+. .+..+++|+++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~--l~~~~~g~~~G~~~~~---~~~~~----~~~~~~~A~~~~~v~ 71 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEIT--VALLRENSVFGVLSLI---TGHRS----DRFYHAVAFTRVELL 71 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEee--eEEccCCCEeeeeeec---cCCCC----ccceEEEEecceEEE
Confidence 78999999999999999999999887 55678766 7899999999998874 33221 124689999999999
Q ss_pred eeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 005197 583 ALMADDLKFVASQFRRLHSKQLRHTFR 609 (709)
Q Consensus 583 ~L~~~~f~~l~~~~p~l~~~~l~~~~r 609 (709)
.+++++|++++.++|.+....++...+
T Consensus 72 ~i~~~~~~~l~~~~p~l~~~~~~~l~~ 98 (193)
T TIGR03697 72 AVPIEQVEKAIEEDPDLSMLLLQGLSS 98 (193)
T ss_pred EeeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 999999999999999998877776544
No 21
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.26 E-value=1.2e-11 Score=131.61 Aligned_cols=131 Identities=26% Similarity=0.425 Sum_probs=112.4
Q ss_pred HHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCe
Q 005197 469 HLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDF 548 (709)
Q Consensus 469 ~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~ 548 (709)
..+.++|+++|+|.+++++.+..+++.++...|..|++|+++|+.++.+|+|.+|.|.+...+++.++...+..+..||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 34578999999999999999999999999999999999999999999999999999999987766444444899999999
Q ss_pred eehhhhhhhcCCCCCCCCCCcceEEEEecc-ceeeeeCHHHHHHHHHHhHHHHHHHHHHHH
Q 005197 549 CGEELLTWALDPQSSSNLPISTRTVRALTE-VEAFALMADDLKFVASQFRRLHSKQLRHTF 608 (709)
Q Consensus 549 fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~-~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~ 608 (709)
|||-+++ .+ . .|++++.|.++ ++++.|+++.|..++....++..+......
T Consensus 348 FGE~al~--~e-d------vRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D~~ 399 (732)
T KOG0614|consen 348 FGERALL--GE-D------VRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGDEE 399 (732)
T ss_pred hhHHHhh--cc-C------ccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccchh
Confidence 9999984 22 2 25889999988 999999999999999988877754444433
No 22
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.22 E-value=1.7e-10 Score=124.99 Aligned_cols=117 Identities=20% Similarity=0.269 Sum_probs=103.3
Q ss_pred HhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeeh
Q 005197 472 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGE 551 (709)
Q Consensus 472 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe 551 (709)
.+++.++|+|+.++++++++|...+....|.+||.|+..|.+.+++|+|.+|.|++...++ + . +..+.+||.||.
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g-~--v--~~~~~~gdlFg~ 80 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGG-E--V--LDRLAAGDLFGF 80 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCC-e--e--eeeeccCccccc
Confidence 5789999999999999999999999999999999999999999999999999999887543 3 2 789999999999
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHH
Q 005197 552 ELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSK 602 (709)
Q Consensus 552 ~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~ 602 (709)
.+++ +..+. ...+.|.+|+.+|.||++.|.+++.++|+++.-
T Consensus 81 ~~l~---~~~~~------~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~f 122 (610)
T COG2905 81 SSLF---TELNK------QRYMAAEEDSLCYLLPKSVFMQLMEENPEFADF 122 (610)
T ss_pred hhhc---ccCCC------cceeEeeccceEEecCHHHHHHHHHhCcHHHHH
Confidence 9985 22221 447888899999999999999999999988763
No 23
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.13 E-value=1.2e-10 Score=124.28 Aligned_cols=124 Identities=24% Similarity=0.381 Sum_probs=106.4
Q ss_pred HHHHHHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecC
Q 005197 465 DIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLG 544 (709)
Q Consensus 465 ~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~ 544 (709)
.-..++..+.+++-.+.++++...+.++..+|.++.|.+|++|++|||+++++|++.+|.+.+.. +|+- ++.++
T Consensus 146 ~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~--~g~l----l~~m~ 219 (732)
T KOG0614|consen 146 VGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR--EGKL----LGKMG 219 (732)
T ss_pred ccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee--CCee----eeccC
Confidence 33455667788888999999999999999999999999999999999999999999999999986 3432 78999
Q ss_pred CCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHH
Q 005197 545 AGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQ 603 (709)
Q Consensus 545 ~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~ 603 (709)
+|..|||.+++++. + |+++++|+++|.++.|.++.|+.++...-.-....
T Consensus 220 ~gtvFGELAILync---t------RtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~ 269 (732)
T KOG0614|consen 220 AGTVFGELAILYNC---T------RTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQ 269 (732)
T ss_pred CchhhhHHHHHhCC---c------chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986433 2 58999999999999999999999998755444333
No 24
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.13 E-value=3.5e-10 Score=125.30 Aligned_cols=113 Identities=22% Similarity=0.373 Sum_probs=97.2
Q ss_pred HhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeeh
Q 005197 472 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGE 551 (709)
Q Consensus 472 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe 551 (709)
.++++++++|++++++.++.++..++.+.|++|++|+++||+++.+|+|++|.|+++..+.+.+.+ +..+++|++||+
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~--l~~l~~Gd~fG~ 84 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRP--EFLLKRYDYFGY 84 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEE--EEEeCCCCEeeh
Confidence 456889999999999999999999999999999999999999999999999999998854433444 788999999997
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhH
Q 005197 552 ELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFR 597 (709)
Q Consensus 552 ~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p 597 (709)
. + .+.+ +.++++|.++|+++.|+++.|..+...++
T Consensus 85 ~-l----~~~~------~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 85 G-L----SGSV------HSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h-h----CCCC------cccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 4 3 2233 37899999999999999999988876544
No 25
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.08 E-value=2.4e-10 Score=117.25 Aligned_cols=119 Identities=17% Similarity=0.185 Sum_probs=101.6
Q ss_pred HhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeeh
Q 005197 472 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGE 551 (709)
Q Consensus 472 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe 551 (709)
.+.+++.-+|++++++.+..+.+.|..+.++.|+.|+++||.++.+|+|.+|.+.++.. |+- +..+.+|..|||
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~--~~~----v~~~~~g~sFGE 194 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN--GTY----VTTYSPGGSFGE 194 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC--CeE----EeeeCCCCchhh
Confidence 56778889999999999999999999999999999999999999999999999999985 222 689999999999
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHH
Q 005197 552 ELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLR 605 (709)
Q Consensus 552 ~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~ 605 (709)
.++. -+.| |.+|+.|.+++.+|.|++..|.+++-.+.....+++.
T Consensus 195 lALm---yn~P------RaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~ 239 (368)
T KOG1113|consen 195 LALM---YNPP------RAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYE 239 (368)
T ss_pred hHhh---hCCC------cccceeeccccceEEEeeceeEEEeeccchhhhhhhh
Confidence 9985 3333 4889999999999999999998887655443333333
No 26
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.99 E-value=3.4e-09 Score=88.92 Aligned_cols=55 Identities=13% Similarity=0.338 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005197 348 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQ 402 (709)
Q Consensus 348 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~ 402 (709)
.|..++||++.|+||+||||+.|.+..+++++++.+++|+.++++.++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999999999999999998875
No 27
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.95 E-value=1.9e-10 Score=117.94 Aligned_cols=184 Identities=16% Similarity=0.255 Sum_probs=114.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcceeEEcCCCcccCCCeEecCHHHHHHHHhhh-hHHHHHHhhCChhhhhhheeecCC
Q 005197 131 METTASVLRSFTDIFYIFHIILQFRTGFIAPSSRVFGRGVLVEDTWLIAKKYMSS-HFLVDILAVLPLPQVVILIIIPNM 209 (709)
Q Consensus 131 ~~~~~~~~~~~~di~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~ 209 (709)
....++.+++.+-++|-.+.++++..| |+ ..|++++ --++|+++++|+.+= +...++.
T Consensus 225 y~~aFFclDTACVmIFT~EYlLRL~aA---Ps----------------R~rF~RSvMSiIDVvAIlPYYig--Lv~t~N~ 283 (632)
T KOG4390|consen 225 YPVAFFCLDTACVMIFTGEYLLRLFAA---PS----------------RYRFLRSVMSIIDVVAILPYYIG--LVMTDNE 283 (632)
T ss_pred cceeeEEecceeEEEeeHHHHHHHHcC---ch----------------HHHHHHHHHHHHHHhhhhhhheE--EEecCCc
Confidence 345678889999999999999998765 22 3567887 679999999999532 2333455
Q ss_pred CCcchhcchhhHHHHHHHhhhhhhhhhhHhHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhchhhcc
Q 005197 210 GGSEVVNTKNLLKFVVLFQYVPRFLRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGASWYLFSIERETTCWK 289 (709)
Q Consensus 210 ~~~~~~~~~~~Lr~i~l~~~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~ll~~~l~~H~~ac~wy~i~~~~~~~~w~ 289 (709)
+.+..+.+++++|++|+++ ..|--.-.|+. |+-.+.-..-.-+.++....++-++|.+.|+.-..
T Consensus 284 DVSGaFVTLRVFRVFRIFK-FSRHSQGLRIL-------GYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg------- 348 (632)
T KOG4390|consen 284 DVSGAFVTLRVFRVFRIFK-FSRHSQGLRIL-------GYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKG------- 348 (632)
T ss_pred cccceeEEEEeeeeeeeee-ecccccccchh-------hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc-------
Confidence 5666666655544333222 11111111111 11111100001122222223445566655553210
Q ss_pred ccccCCCCccccccCCCccccccccccCCCCCCCCcccchhhhhhhhcCcccCCChhhHHHHHHHHHHhhccccCCCCCC
Q 005197 290 GHCKMDNGCKLYCDDGQGNNAFLGDFCPIQPADTKLFNFGIFLGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQNLET 369 (709)
Q Consensus 290 ~~~~~~~~c~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~Y~~slyw~l~tlttvGygd~~ 369 (709)
.+.+-++....+||+.++||||+||||..
T Consensus 349 ---------------------------------------------------~~at~FTsIPaaFWYTIVTmTTLGYGDMV 377 (632)
T KOG4390|consen 349 ---------------------------------------------------SSATKFTSIPAAFWYTIVTMTTLGYGDMV 377 (632)
T ss_pred ---------------------------------------------------ccccccccCcHhHhhheeeeeeccccccc
Confidence 02233445667999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005197 370 STYVWEICFAVFISISGLVLFSFLIGNMQTYL 401 (709)
Q Consensus 370 ~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l 401 (709)
|.+...++|..++.+.|+++.|+.+..+.+-+
T Consensus 378 p~TIaGKIfGsiCSLSGVLVIALPVPvIVSNF 409 (632)
T KOG4390|consen 378 PSTIAGKIFGSICSLSGVLVIALPVPVIVSNF 409 (632)
T ss_pred hHHHHHHHhhhhhcccceEEEeccccEEEech
Confidence 99999999999999999999998665544433
No 28
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.83 E-value=9.5e-09 Score=105.69 Aligned_cols=118 Identities=20% Similarity=0.313 Sum_probs=104.2
Q ss_pred HHHHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCC
Q 005197 467 KRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAG 546 (709)
Q Consensus 467 ~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~G 546 (709)
++.|+.++|+++|++..++..+...+++.+.++.|++|+.|+.+|++++.+|+|.+|.|.+....+| + .+ .++.|
T Consensus 234 krkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~---v-~v-kl~~~ 308 (368)
T KOG1113|consen 234 KRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG---V-EV-KLKKG 308 (368)
T ss_pred hhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC---e-EE-Eechh
Confidence 3567889999999999999999999999999999999999999999999999999999998875554 2 24 99999
Q ss_pred CeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHH
Q 005197 547 DFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRR 598 (709)
Q Consensus 547 d~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~ 598 (709)
|+|||.+++ ...+ |.++|.|.++..+..++++.|+.++.-.-+
T Consensus 309 dyfge~al~---~~~p------r~Atv~a~~~~kc~~~dk~~ferllgpc~d 351 (368)
T KOG1113|consen 309 DYFGELALL---KNLP------RAATVVAKGRLKCAKLDKPRFERLLGPCQD 351 (368)
T ss_pred hhcchHHHH---hhch------hhceeeccCCceeeeeChHHHHHHhhHHHH
Confidence 999999984 4444 378999999999999999999999987544
No 29
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.61 E-value=3.2e-08 Score=106.21 Aligned_cols=137 Identities=18% Similarity=0.290 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhC
Q 005197 346 PKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHR 425 (709)
Q Consensus 346 ~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~ 425 (709)
.-.|..|+|+-++||+||||||+...+...++|.++.++.|+.+||--+..+..++.+..+---|++..-.. +|.
T Consensus 286 rltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehgk-----khi 360 (1103)
T KOG1420|consen 286 RLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHGK-----KHI 360 (1103)
T ss_pred cchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcCC-----eeE
Confidence 456999999999999999999999999999999999999999999999999999998776544443321100 000
Q ss_pred CC-ChhHHHHHHHHHHHHHHhhc-CCCHH-HHHhhCChhhHHHHHHHHHHhHhccchhhcc--CcHHHHH
Q 005197 426 LL-PDTLRERIRRYEQYKWQETR-GVDEE-NLLCNLPKDLRRDIKRHLCLALLMRVPLFEK--MDEQLLD 490 (709)
Q Consensus 426 ~l-p~~L~~rv~~y~~y~w~~~~-~~~e~-~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~--ls~~~l~ 490 (709)
-+ ..-..+.|..|++-.-.++| .+|.+ -++...||+|.-+- ++..-..++.+|++ |++..+.
T Consensus 361 vvcghityesvshflkdflhedrddvdvevvflhr~~pdleleg---lfkrhft~veffqgtvmnp~dl~ 427 (1103)
T KOG1420|consen 361 VVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELEG---LFKRHFTQVEFFQGTVMNPHDLA 427 (1103)
T ss_pred EEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchHH---HHhhheeeEEEecccccChhhhh
Confidence 00 11223445555544434433 35533 46788899886553 34445567788864 4554443
No 30
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.23 E-value=0.00011 Score=78.65 Aligned_cols=93 Identities=14% Similarity=0.185 Sum_probs=78.6
Q ss_pred hhhHHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 005197 345 FPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAH 424 (709)
Q Consensus 345 ~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~ 424 (709)
....|+.++|....|..++||||+.|.|...+..+++..++|.++.|.+++.++--+. ...--+.+++||-.
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLe--------Lt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLE--------LTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 3456999999999999999999999999999999999999999999999998875443 33333568889988
Q ss_pred CCCChhHHHHHHHHHHHHHHh
Q 005197 425 RLLPDTLRERIRRYEQYKWQE 445 (709)
Q Consensus 425 ~~lp~~L~~rv~~y~~y~w~~ 445 (709)
.++-+++++-..+=++..|.-
T Consensus 356 tqLTk~~KnAAA~VLqeTW~i 376 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWLI 376 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877777777763
No 31
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.20 E-value=2.7e-06 Score=96.47 Aligned_cols=113 Identities=22% Similarity=0.343 Sum_probs=97.1
Q ss_pred HHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCC
Q 005197 488 LLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNL 566 (709)
Q Consensus 488 ~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~ 566 (709)
++..+-..+....+.+|+.++++||..|++|+|+.|.++.... .+|+..+ +..++.||.+|+... +..+++
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i--~~EygrGd~iG~~E~---lt~~~R--- 571 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI--VGEYGRGDLIGEVEM---LTKQPR--- 571 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh--hhhccCcceeehhHH---hhcCCc---
Confidence 4556666788899999999999999999999999999997764 5555545 789999999999987 445554
Q ss_pred CCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 005197 567 PISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFY 611 (709)
Q Consensus 567 ~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~ 611 (709)
..|+.|+-++++..||..-|..+..+||.+..++.+..++++
T Consensus 572 ---~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 572 ---ATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred ---cceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 669999999999999999999999999999988888887776
No 32
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.10 E-value=4.3e-05 Score=83.57 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005197 348 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYL 401 (709)
Q Consensus 348 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l 401 (709)
.+..|+||++.|+||+||||+.|.+...++++++++++|+.+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999998887654
No 33
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=98.10 E-value=1.9e-06 Score=70.68 Aligned_cols=49 Identities=12% Similarity=0.191 Sum_probs=40.0
Q ss_pred cccccccccccCCC---CceeCCCChHHHHHHHHHHHHHHHHHHhhhhhcee
Q 005197 67 CSFNSFVNKGLGSG---KKVLDPQGAFLQKWNKIFVLSCVIAVSLDPLFFYV 115 (709)
Q Consensus 67 ~~~~~~~~~~~~~~---~~ii~P~s~~~~~W~~~~~i~~~~~~~~~P~~~~~ 115 (709)
+|++++..|.++.. .+||||.|+|+.+||.+++++++++++++|+.+++
T Consensus 19 ~S~~ai~~E~~R~~~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF 70 (77)
T PF08412_consen 19 GSKKAIEKEKERQRSSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISF 70 (77)
T ss_pred ccHHHHHHHHHHHhcCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheE
Confidence 45555655555433 78999999999999999999999999999998544
No 34
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.99 E-value=3.7e-05 Score=81.99 Aligned_cols=58 Identities=19% Similarity=0.363 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhhccccCCCC--CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005197 347 KKFFYCFWWGLRNLSSLGQNL--ETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQST 404 (709)
Q Consensus 347 ~~Y~~slyw~l~tlttvGygd--~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~ 404 (709)
..+..+|++++.|+||+|||. ++|....-.+++++-+++|+++.|+++|.+-+=+..-
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP 142 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP 142 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 468889999999999999998 6788888889999999999999999999988765543
No 35
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.73 E-value=0.0002 Score=81.93 Aligned_cols=113 Identities=13% Similarity=0.157 Sum_probs=91.6
Q ss_pred HHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEE-ecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcc
Q 005197 492 LCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPIST 570 (709)
Q Consensus 492 L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~-~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~ 570 (709)
++.+++...+..|++|++.|++.+.+|.+.+|.+.++. ..+|++.. +....+|+.|-....+ ++..+......++
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~l--lk~V~~G~~~tSllSi--Ld~l~~~ps~~~~ 186 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYL--LKTVPPGGSFTSLLSI--LDSLPGFPSLSRT 186 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceee--EeeccCCCchHhHHHH--HHhccCCCcccce
Confidence 44778888999999999999999999999999999887 44677776 7899999888776543 3333332334578
Q ss_pred eEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHH
Q 005197 571 RTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTF 608 (709)
Q Consensus 571 ~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~ 608 (709)
..++|.++|.+..+|.+.|..+...||+-..+.+|-+.
T Consensus 187 i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvm 224 (1158)
T KOG2968|consen 187 IAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQVVM 224 (1158)
T ss_pred eeeeeecCceEEEeccchhhhhhccChHHHHHHHHHHH
Confidence 89999999999999999999999999987665555543
No 36
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.52 E-value=0.0035 Score=57.97 Aligned_cols=108 Identities=16% Similarity=0.190 Sum_probs=84.2
Q ss_pred cCcHHHHHHHHhh-cceeeeCCCCEEEccCC-CCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCC
Q 005197 483 KMDEQLLDALCDR-LKPVLYTEESYIVREGD-PVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDP 560 (709)
Q Consensus 483 ~ls~~~l~~L~~~-l~~~~~~~ge~I~~eGd-~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~ 560 (709)
+++.....+|+.+ .+.....+|+.-.-||. +.|.+-++++|++++... |+- +..+.|.+|...-.+.. ..+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~--g~f----LH~I~p~qFlDSPEW~s-~~~ 86 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD--GRF----LHYIYPYQFLDSPEWES-LRP 86 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEEC--CEe----eEeecccccccChhhhc-ccc
Confidence 4688888898887 67779999999998886 668999999999998763 432 77888888887776531 111
Q ss_pred CCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHH
Q 005197 561 QSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLH 600 (709)
Q Consensus 561 ~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~ 600 (709)
.. -..-.+|++|.++|..+..+++.+..++...|-+.
T Consensus 87 s~---~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~ 123 (153)
T PF04831_consen 87 SE---DDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLA 123 (153)
T ss_pred CC---CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHH
Confidence 11 11236899999999999999999999999988544
No 37
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00037 Score=77.43 Aligned_cols=61 Identities=11% Similarity=0.321 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005197 348 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRL 408 (709)
Q Consensus 348 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~ 408 (709)
.+..|+|++.+++||+|||++.|.+..+++++|+..++|+-++..++++++..+...-.+.
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~ 175 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKL 175 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3677999999999999999999999999999999999999999999999999987665443
No 38
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.29 E-value=0.0081 Score=59.22 Aligned_cols=96 Identities=11% Similarity=0.024 Sum_probs=72.7
Q ss_pred HHHHHHhhcceeeeCCCCEE-EccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCC
Q 005197 488 LLDALCDRLKPVLYTEESYI-VREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNL 566 (709)
Q Consensus 488 ~l~~L~~~l~~~~~~~ge~I-~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~ 566 (709)
..+.+.....+..+++|..+ ..+....+.++++.+|.|.+.. .+| -. +....+..+||-... ..+..
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr-~d~--ll--~~t~~aP~IlGl~~~---~~~~~---- 81 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR-EEN--VL--IGITQAPYIMGLADG---LMKND---- 81 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe-cCC--eE--EEeccCCeEeecccc---cCCCC----
Confidence 45566777788899999997 5444444689999999999953 333 22 678888899997654 22322
Q ss_pred CCcceEEEEeccceeeeeCHHHHHHHHHHhH
Q 005197 567 PISTRTVRALTEVEAFALMADDLKFVASQFR 597 (709)
Q Consensus 567 ~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p 597 (709)
..+.++|.++|+++.++.+++.++++++.
T Consensus 82 --~~~~l~ae~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 82 --IPYKLISEGNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred --ceEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence 25689999999999999999999999854
No 39
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.57 E-value=0.0048 Score=68.53 Aligned_cols=115 Identities=17% Similarity=0.273 Sum_probs=89.6
Q ss_pred HHHHHhHhccchhhccCcHHHHHHHHhhcceeee-CCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCC
Q 005197 468 RHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLY-TEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAG 546 (709)
Q Consensus 468 ~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~-~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~G 546 (709)
.+..++++.+.|.|.+|+-...++||..|..... .+|.+|+..|+.-|..++|+.|+|++...++.. ..+.-|
T Consensus 276 ieqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~------e~l~mG 349 (1283)
T KOG3542|consen 276 IEQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKR------EELKMG 349 (1283)
T ss_pred HHHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCce------EEeecc
Confidence 3455788999999999999999999998877654 589999999999999999999999999987654 467789
Q ss_pred CeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHh
Q 005197 547 DFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQF 596 (709)
Q Consensus 547 d~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~ 596 (709)
+-||...- .+.... ...--+-+.||+..++...|+-.++..-
T Consensus 350 nSFG~~PT---~dkqym-----~G~mRTkVDDCqFVciaqqDycrIln~v 391 (1283)
T KOG3542|consen 350 NSFGAEPT---PDKQYM-----IGEMRTKVDDCQFVCIAQQDYCRILNTV 391 (1283)
T ss_pred cccCCCCC---cchhhh-----hhhhheecccceEEEeehhhHHHHHHHH
Confidence 99996542 121111 0111235678999999999999888654
No 40
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.08 E-value=0.033 Score=58.94 Aligned_cols=62 Identities=18% Similarity=0.367 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhhccccCCCCCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005197 347 KKFFYCFWWGLRNLSSLGQNLETS--TYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRL 408 (709)
Q Consensus 347 ~~Y~~slyw~l~tlttvGygd~~~--~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~ 408 (709)
..+..+|-|++-|=||+|||--.+ .-..-++..++-+|+|+++-|+++|.+-.=+..-.+|.
T Consensus 111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKRA 174 (400)
T KOG3827|consen 111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKRA 174 (400)
T ss_pred cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 346678889999999999996544 34666777888899999999999999887665555443
No 41
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.95 E-value=0.043 Score=56.74 Aligned_cols=59 Identities=12% Similarity=0.219 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCch-------hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 005197 348 KFFYCFWWGLRNLSSLGQNLETSTYV-------WEI-CFAVFISISGLVLFSFLIGNMQTYLQSTTT 406 (709)
Q Consensus 348 ~Y~~slyw~l~tlttvGygd~~~~~~-------~E~-~~~i~~~i~G~~~fa~lig~~~~~l~~~~~ 406 (709)
.|+.|+|+.+.|+||+|+||..+... .++ .++.+.+++|+.+++-+++.+.--+..++.
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~ 252 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNA 252 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 38899999999999999999987432 333 466677788998888888777665555543
No 42
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.84 E-value=0.0018 Score=66.57 Aligned_cols=49 Identities=18% Similarity=0.346 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 005197 348 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGN 396 (709)
Q Consensus 348 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~ 396 (709)
++.-||||+.+.+||+|||-.+|.|.+.++|+|+..++|+-+--..+..
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs 128 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQS 128 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHH
Confidence 5778999999999999999999999999999999999997666554433
No 43
>PLN03223 Polycystin cation channel protein; Provisional
Probab=95.67 E-value=1.7 Score=53.35 Aligned_cols=67 Identities=7% Similarity=-0.054 Sum_probs=37.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhhhhhceeeeecCCcceeecCccchhHHHHHHHHHHHHHHHHHHHhcc
Q 005197 85 DPQGAFLQKWNKIFVLSCVIAVSLDPLFFYVPVINGDRKCVDLDKKMETTASVLRSFTDIFYIFHIILQFR 155 (709)
Q Consensus 85 ~P~s~~~~~W~~~~~i~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~di~f~~Di~l~f~ 155 (709)
.+.+.+...-+.+++++++|.++---..+.---......+ .-....|.+++++.-++-+.=|++-|.
T Consensus 1169 tt~DyfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~l----aYFKSfWNwLEIl~IlLS~AAIvLYFv 1235 (1634)
T PLN03223 1169 TYEDWVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYL----AYFLSGWNYVDFASIGLHLATIMMWFV 1235 (1634)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchh----hHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777666554433210000000001 112457888888888888887777553
No 44
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=95.66 E-value=0.035 Score=60.55 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHH
Q 005197 349 FFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLV 388 (709)
Q Consensus 349 Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~ 388 (709)
.+.|+|+.++|.+||||||..|......++.++++-+.++
T Consensus 218 lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~ 257 (1087)
T KOG3193|consen 218 LFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALG 257 (1087)
T ss_pred eeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHh
Confidence 4568899999999999999999987777666555444433
No 45
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.05 E-value=0.66 Score=54.46 Aligned_cols=87 Identities=15% Similarity=0.215 Sum_probs=52.0
Q ss_pred CceeCCCChHHHHH---------HHHHHHHHHHHHHhhhhhceeeeecCCcceeecCccchhHHHHHHHHHHHHHHHHHH
Q 005197 81 KKVLDPQGAFLQKW---------NKIFVLSCVIAVSLDPLFFYVPVINGDRKCVDLDKKMETTASVLRSFTDIFYIFHII 151 (709)
Q Consensus 81 ~~ii~P~s~~~~~W---------~~~~~i~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~di~f~~Di~ 151 (709)
+.++.|+++|+..- |.++++.++++.+.+.+. -|.+++. ..-...+++-++++-.+|++++.
T Consensus 1104 ~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtiale--rp~i~~~-------s~EriFltlsnyIFtaIfV~Em~ 1174 (1956)
T KOG2302|consen 1104 KYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALE--RPAIVEG-------STERIFLTLSNYIFTAIFVVEMT 1174 (1956)
T ss_pred HHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhc--ccccccC-------cceEEEEEecchHHHHHHHHHHH
Confidence 67999999998654 444555555566555544 2222111 11122344556888999999998
Q ss_pred Hhcc-eeEEcCCCcccCCCeEecCHHHHHHHHhhh-hHHHHHHh
Q 005197 152 LQFR-TGFIAPSSRVFGRGVLVEDTWLIAKKYMSS-HFLVDILA 193 (709)
Q Consensus 152 l~f~-t~y~~~~~~~~~~g~lV~d~~~Ia~~Yl~~-~F~iDlls 193 (709)
++-. .|.+- || ..|+++ |-.+|.+-
T Consensus 1175 lKVVALGl~f--------ge---------~aYl~ssWN~LDgfl 1201 (1956)
T KOG2302|consen 1175 LKVVALGLYF--------GE---------QAYLRSSWNVLDGFL 1201 (1956)
T ss_pred HHHHhhhhcc--------ch---------HHHHHHHHHhhhHHH
Confidence 8854 23221 22 468887 87777543
No 46
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=92.75 E-value=0.034 Score=61.66 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHhhccccCCCCCCCCchhHH--------HHHHHHHHHHHHHHHHHHH
Q 005197 347 KKFFYCFWWGLRNLSSLGQNLETSTYVWEI--------CFAVFISISGLVLFSFLIG 395 (709)
Q Consensus 347 ~~Y~~slyw~l~tlttvGygd~~~~~~~E~--------~~~i~~~i~G~~~fa~lig 395 (709)
-.|+.|+|+++.++||+|+||+.|.+.... .+..+..++|...++.+.-
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 297 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVLL 297 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHhh
Confidence 348889999999999999999999998766 6888888889888888773
No 47
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=90.82 E-value=0.4 Score=53.94 Aligned_cols=105 Identities=19% Similarity=0.230 Sum_probs=80.5
Q ss_pred ChhhHHHHHHHHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeee
Q 005197 459 PKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFF 538 (709)
Q Consensus 459 p~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~ 538 (709)
|+.|+...........|.+...|.++-...+.++|.......++.+.++++.|+.+...|++++|.|-+. |
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~----g----- 93 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE----G----- 93 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee----c-----
Confidence 4555555554444567888899999999999999999999999999999999999999999999998653 2
Q ss_pred eeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCH
Q 005197 539 NSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMA 586 (709)
Q Consensus 539 ~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~ 586 (709)
..+-|...||-.. +.. |+..+-.+++++.++++.
T Consensus 94 --qi~mp~~~fgkr~------g~~------r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 94 --QIYMPYGCFGKRT------GQN------RTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred --ceecCcccccccc------ccc------cccceeeecccceeeeec
Confidence 1344455677532 222 477888899999888843
No 48
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.18 E-value=4.1 Score=52.08 Aligned_cols=49 Identities=12% Similarity=0.256 Sum_probs=36.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcceeEEcCCCcccCCCeEecCHHHHHHHHhhh-hHHHHHHhhCChhh
Q 005197 131 METTASVLRSFTDIFYIFHIILQFRTGFIAPSSRVFGRGVLVEDTWLIAKKYMSS-HFLVDILAVLPLPQ 199 (709)
Q Consensus 131 ~~~~~~~~~~~~di~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~ 199 (709)
....+...+.+.-.+|.+.+++.... .|-. . |+++ |.++|++-+.-.-.
T Consensus 870 ~~~~L~y~D~~Ft~iFt~Em~lK~ia-----------~Gf~-------~--y~rn~w~~lDf~Vv~vsli 919 (1592)
T KOG2301|consen 870 INGILEYADYIFTYIFTFEMLLKWIA-----------YGFF-------F--YFRNAWNWLDFVVVIVSLI 919 (1592)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-----------hHHH-------H--HHhhHHhhhhHHHhhhHHH
Confidence 45678889999999999999999653 1321 1 9998 99999987765533
No 49
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.22 E-value=78 Score=38.31 Aligned_cols=57 Identities=18% Similarity=0.366 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhhhhhceeeeecCCcceeecCc--cchhHHHHHHHHHHHHHHHHHHHhcc-eeEE
Q 005197 94 WNKIFVLSCVIAVSLDPLFFYVPVINGDRKCVDLDK--KMETTASVLRSFTDIFYIFHIILQFR-TGFI 159 (709)
Q Consensus 94 W~~~~~i~~~~~~~~~P~~~~~~~~~~~~~c~~~~~--~~~~~~~~~~~~~di~f~~Di~l~f~-t~y~ 159 (709)
++.+-+++++++++..-+| +.|-+++- .--..+.+++-++-+||.++|+++.. .|.+
T Consensus 81 fe~vsmlvillncvtlgmf---------rpced~~c~s~rc~ilqafddfifaffavemv~kmvalgif 140 (1956)
T KOG2302|consen 81 FECVSMLVILLNCVTLGMF---------RPCEDMDCLSDRCKILQAFDDFIFAFFAVEMVLKMVALGIF 140 (1956)
T ss_pred HHHHHHHHHHHhhhhhccc---------ccchhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555556666666655443 23433332 22357889999999999999999987 3443
No 50
>COG4709 Predicted membrane protein [Function unknown]
Probab=81.87 E-value=7.2 Score=37.68 Aligned_cols=72 Identities=21% Similarity=0.255 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh--hcCCCHHHHHhhC--ChhhHHHHHHHHHHhHhccchhhccCcHH
Q 005197 414 KRRDAEQWMAHRLLPDTLRERIRRYEQYKWQE--TRGVDEENLLCNL--PKDLRRDIKRHLCLALLMRVPLFEKMDEQ 487 (709)
Q Consensus 414 k~~~~~~~m~~~~lp~~L~~rv~~y~~y~w~~--~~~~~e~~ll~~L--p~~Lr~~i~~~~~~~~L~~v~lF~~ls~~ 487 (709)
-++++++|++ ++|++.+..+..||+-.+.+ ..|.+|+++..+| |+++-.|+..+.-.+-.+.-|-+.+.+..
T Consensus 6 fL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 6 FLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 3567788884 89999999999999888775 3588999999988 77888888777655555555555555443
No 51
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=78.65 E-value=44 Score=39.40 Aligned_cols=75 Identities=21% Similarity=0.392 Sum_probs=55.3
Q ss_pred cccCCCCCCCCc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHhCCCChhHHH
Q 005197 361 SSLGQNLETSTY------VWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRL-EEMRVKRRDAEQWMAHRLLPDTLRE 433 (709)
Q Consensus 361 ttvGygd~~~~~------~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~-~e~~~k~~~~~~~m~~~~lp~~L~~ 433 (709)
.|+|+||..... ..-.+|.+++.++.+.++-.+|+.|++......... ++++.+...+ --|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~-iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAAT-ILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHH-HHHHHhcCCHHHHH
Confidence 578999876543 345667777778888888899999998888776655 6676654443 45667999999998
Q ss_pred HHH
Q 005197 434 RIR 436 (709)
Q Consensus 434 rv~ 436 (709)
+-+
T Consensus 680 ~~~ 682 (782)
T KOG3676|consen 680 RFR 682 (782)
T ss_pred HHh
Confidence 833
No 52
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=76.67 E-value=13 Score=36.07 Aligned_cols=56 Identities=27% Similarity=0.507 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh--hcCCCHHHHHhhC--ChhhHHHHHHHH
Q 005197 413 VKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQE--TRGVDEENLLCNL--PKDLRRDIKRHL 470 (709)
Q Consensus 413 ~k~~~~~~~m~~~~lp~~L~~rv~~y~~y~w~~--~~~~~e~~ll~~L--p~~Lr~~i~~~~ 470 (709)
+=+++++++++ ++|++-++.+.+||+-...+ ..|.+|++++++| |+++-+++..+.
T Consensus 5 efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 5 EFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 34567788886 69999999999999988875 4678999999997 777777776554
No 53
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=67.26 E-value=17 Score=34.46 Aligned_cols=45 Identities=16% Similarity=0.349 Sum_probs=31.4
Q ss_pred CCCCEE-EccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 502 TEESYI-VREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 502 ~~ge~I-~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
.+|+.- ++.. ..++++++++|.+.+-..++|+.+ ...+++||+|=
T Consensus 36 Gpn~R~d~H~~-~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fl 81 (159)
T TIGR03037 36 GPNARTDFHDD-PGEEFFYQLKGEMYLKVTEEGKRE---DVPIREGDIFL 81 (159)
T ss_pred CCCCCcccccC-CCceEEEEEcceEEEEEEcCCcEE---EEEECCCCEEE
Confidence 344333 4443 378999999999998776666422 35899999883
No 54
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=66.83 E-value=8 Score=30.66 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=33.0
Q ss_pred eeeCCCCEEEccCCCCC-eEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 499 VLYTEESYIVREGDPVD-EMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 499 ~~~~~ge~I~~eGd~~~-~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
..++||+..-..-.+.. ++++|++|.+.+.. + |+ ...+++||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~-~-~~-----~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV-D-GE-----RVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE-T-TE-----EEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE-c-cE-----EeEccCCEEEE
Confidence 46778887665555666 99999999999883 3 33 46789998763
No 55
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=63.32 E-value=41 Score=30.66 Aligned_cols=69 Identities=9% Similarity=0.042 Sum_probs=42.2
Q ss_pred ceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEe
Q 005197 497 KPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRAL 576 (709)
Q Consensus 497 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~ 576 (709)
....++||..+-..-....++++|++|.+.+...++|+ ...+.+||.+--.+ .. ...+++.
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~-----~~~L~aGD~i~~~~-------~~-------~H~~~N~ 98 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGE-----VHPIRPGTMYALDK-------HD-------RHYLRAG 98 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCE-----EEEeCCCeEEEECC-------CC-------cEEEEcC
Confidence 33477888755332222247999999999987322244 46899999885322 11 2345555
Q ss_pred ccceeeee
Q 005197 577 TEVEAFAL 584 (709)
Q Consensus 577 ~~~~vl~L 584 (709)
++++++.+
T Consensus 99 e~~~~l~v 106 (125)
T PRK13290 99 EDMRLVCV 106 (125)
T ss_pred CCEEEEEE
Confidence 77777665
No 56
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=60.35 E-value=42 Score=25.93 Aligned_cols=47 Identities=9% Similarity=0.162 Sum_probs=25.1
Q ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHH
Q 005197 374 WEICFAVF---ISISGLVLFSFLIGNMQTYLQSTT---TRLEEMRVKRRDAEQWMA 423 (709)
Q Consensus 374 ~E~~~~i~---~~i~G~~~fa~lig~~~~~l~~~~---~~~~e~~~k~~~~~~~m~ 423 (709)
+..++.+. +.+++.+.|+. -+-.++++.+ +...++++|++.+-+.+.
T Consensus 4 ~~~Iy~~~Vi~l~vl~~~~Ftl---~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 4 GDLIYYILVIILIVLFGASFTL---FIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 34455553 33334444443 3444555433 233368888888877654
No 57
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=59.95 E-value=11 Score=34.73 Aligned_cols=60 Identities=13% Similarity=0.208 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005197 345 FPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTT 405 (709)
Q Consensus 345 ~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~ 405 (709)
.......++|+.+.+++. +-++..|.+...+++.+++.++++++.+.-.+++++++....
T Consensus 41 ~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~ 100 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK 100 (148)
T ss_dssp HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 445677788888888776 445788999999999999999999999999999999987553
No 58
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=55.72 E-value=24 Score=34.15 Aligned_cols=60 Identities=12% Similarity=0.245 Sum_probs=40.0
Q ss_pred CCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHH
Q 005197 512 DPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADD 588 (709)
Q Consensus 512 d~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~ 588 (709)
++.++++++++|.+.+...++|+-. ...+++||+|= -|... ..+-++.++|..+.+.+..
T Consensus 52 ~~tdE~FyqleG~~~l~v~d~g~~~---~v~L~eGd~fl--------lP~gv------pHsP~r~~~tv~LviE~~r 111 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQEDGKRR---DVPIREGEMFL--------LPPHV------PHSPQREAGSIGLVIERKR 111 (177)
T ss_pred CCCceEEEEECCeEEEEEEcCCcee---eEEECCCCEEE--------eCCCC------CcCCccCCCeEEEEEEeCC
Confidence 5678999999999998886666422 35799999883 22222 2233445777777776543
No 59
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=53.72 E-value=4.9e+02 Score=31.66 Aligned_cols=24 Identities=8% Similarity=0.091 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcc
Q 005197 132 ETTASVLRSFTDIFYIFHIILQFR 155 (709)
Q Consensus 132 ~~~~~~~~~~~di~f~~Di~l~f~ 155 (709)
...|..++.++.++.++-+++.-.
T Consensus 497 ~s~wN~ld~~i~~ls~~~~~~~~~ 520 (798)
T KOG3599|consen 497 RSKWNWLDLAIVLLSVVLLVLMIT 520 (798)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777766643
No 60
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=51.32 E-value=23 Score=31.37 Aligned_cols=44 Identities=27% Similarity=0.527 Sum_probs=33.9
Q ss_pred CCChhHHHHHHHHHHHHHHh----------hcCCCHHHHHhhCChhhHHHHHHH
Q 005197 426 LLPDTLRERIRRYEQYKWQE----------TRGVDEENLLCNLPKDLRRDIKRH 469 (709)
Q Consensus 426 ~lp~~L~~rv~~y~~y~w~~----------~~~~~e~~ll~~Lp~~Lr~~i~~~ 469 (709)
-||+++|..|..++.-.-.. ....|...++..||++||++|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 58999999999987655332 123566789999999999999754
No 61
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=48.05 E-value=86 Score=31.09 Aligned_cols=58 Identities=24% Similarity=0.408 Sum_probs=39.6
Q ss_pred hCChhhHHHHHHHHHHhHhccchhh-ccCcHHHHHHHHhhcceee--eCCCCEEEccCCCCC
Q 005197 457 NLPKDLRRDIKRHLCLALLMRVPLF-EKMDEQLLDALCDRLKPVL--YTEESYIVREGDPVD 515 (709)
Q Consensus 457 ~Lp~~Lr~~i~~~~~~~~L~~v~lF-~~ls~~~l~~L~~~l~~~~--~~~ge~I~~eGd~~~ 515 (709)
.+|.. ...+...+...++.---.| ...++...++..+...+.. +++|+.|+++|+..+
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 34544 3344444444444333333 4567888888999999997 999999999999765
No 62
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=47.49 E-value=26 Score=28.56 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=29.0
Q ss_pred eCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 501 YTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 501 ~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
..||..-..-. .+++.+|++|.+.+... +|. ...+++||.|-
T Consensus 14 ~~pg~~~~~~~--~~E~~~vleG~v~it~~-~G~-----~~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPYP--EDEFFYVLEGEVTITDE-DGE-----TVTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEES--SEEEEEEEEEEEEEEET-TTE-----EEEEETTEEEE
T ss_pred ECCceeEeeCC--CCEEEEEEEeEEEEEEC-CCC-----EEEEcCCcEEE
Confidence 34555433332 28899999999998765 454 35789999874
No 63
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=46.35 E-value=2.5e+02 Score=36.68 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcceeEEcCCCcccCCCeEecCHHHHHHHHhhh-hHHHHHHhhCChhh
Q 005197 132 ETTASVLRSFTDIFYIFHIILQFRTGFIAPSSRVFGRGVLVEDTWLIAKKYMSS-HFLVDILAVLPLPQ 199 (709)
Q Consensus 132 ~~~~~~~~~~~di~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~ 199 (709)
...+++.+.+.-.+|.+++.+..-. .+ -+.|.++ |.++|.+-+. +..
T Consensus 472 ~~~l~~~~~vF~~lF~~Em~~ki~a--l~------------------~~~yF~~~~n~fD~~iv~-l~~ 519 (1592)
T KOG2301|consen 472 NYLLYLGNVVFTGLFTVEMILKIYA--LG------------------PRNYFRRGWNIFDLIIVL-LSL 519 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--cC------------------cHHHHhhhcchheEEEEe-hhh
Confidence 4567777888888888888887431 11 1356666 8899988877 443
No 64
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=44.95 E-value=91 Score=34.12 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005197 346 PKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTT 405 (709)
Q Consensus 346 ~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~ 405 (709)
.--|+.+|-+++..+.+++-++....-..-..+++++.+++++.|.+.|.+++..++-.+
T Consensus 98 Lg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ 157 (371)
T PF10011_consen 98 LGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSN 157 (371)
T ss_pred HHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 345788888888888887766653332333888889999999999999999998876544
No 65
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=43.73 E-value=60 Score=30.14 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=36.8
Q ss_pred cceeeeCCCCEEEccCCC-CCeEEEEEeeeEEEEEec-CCceeeeeeeecCCCCeee
Q 005197 496 LKPVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTN-GGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~-~g~~~~~~l~~l~~Gd~fG 550 (709)
+....+.||...-..-.+ .+++++|++|...+...+ +|++.. ...+++||.+-
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~--~~~l~~GD~~~ 86 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVY--DARLREGDVFV 86 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEE--EEEecCCCEEE
Confidence 444577888876544433 568999999999987643 333433 57899999875
No 66
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=40.58 E-value=7.2e+02 Score=29.84 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHH
Q 005197 373 VWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTR-LEEMRV 413 (709)
Q Consensus 373 ~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~-~~e~~~ 413 (709)
.+-.+|.++..+..+++.-++|+.|....+..... .++++-
T Consensus 587 ~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~wk~ 628 (743)
T TIGR00870 587 VGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEEWKF 628 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHH
Confidence 55666777777777777778888888777765443 334443
No 67
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=39.84 E-value=2e+02 Score=31.99 Aligned_cols=21 Identities=19% Similarity=0.299 Sum_probs=15.6
Q ss_pred HHHHHHHhhh-hHHHHHHhhCC
Q 005197 176 WLIAKKYMSS-HFLVDILAVLP 196 (709)
Q Consensus 176 ~~Ia~~Yl~~-~F~iDlls~lP 196 (709)
++..++|+++ |-++|++.++-
T Consensus 233 ~~~g~~y~~~~WN~~e~~ii~l 254 (425)
T PF08016_consen 233 RREGRAYFKSFWNWLELLIILL 254 (425)
T ss_pred HHhhhHHhhhcCcHHHHHHHHH
Confidence 3444789998 88999887653
No 68
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=38.18 E-value=67 Score=29.10 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=39.5
Q ss_pred cceeeeCCCCEEEccCCC-CCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehh
Q 005197 496 LKPVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEE 552 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~ 552 (709)
+....++||+.+-.--.+ .+...+|++|.+++... |. ...+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~-----~~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GE-----KKELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec--CC-----ceEecCCCEEEEC
Confidence 345688899998877776 77999999999998775 33 4679999998644
No 69
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=37.27 E-value=8.5e+02 Score=29.73 Aligned_cols=43 Identities=9% Similarity=0.086 Sum_probs=31.1
Q ss_pred CCCChhHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhhHHHHHHHHHH
Q 005197 425 RLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCL 472 (709)
Q Consensus 425 ~~lp~~L~~rv~~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~ 472 (709)
.+||+.|+..|..++..... ..-.+++.++++...++...+..
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~l-----~~~~lF~~~s~~~l~~L~~~~~~ 399 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPVV-----EKVYLFKGVSREILLLLVTKMKA 399 (823)
T ss_pred HHcCHHHHHHHHHHHHHHHH-----hhCcchhcCCHHHHHHHHHhhhe
Confidence 36899999999887654332 33467888888888888776643
No 70
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=36.64 E-value=78 Score=28.73 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=34.4
Q ss_pred hcceeeeCCCCEE-EccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCee
Q 005197 495 RLKPVLYTEESYI-VREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 549 (709)
Q Consensus 495 ~l~~~~~~~ge~I-~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~f 549 (709)
......+++|+-+ .+--...++.|+|++|...+... ++ ...+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~--~~-----~~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG--GE-----EVEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC--CE-----EEEecCCCEE
Confidence 3455677777775 44444478999999999998774 33 3578888876
No 71
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=34.13 E-value=6.3e+02 Score=30.81 Aligned_cols=48 Identities=10% Similarity=0.230 Sum_probs=37.1
Q ss_pred HHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005197 353 FWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQ 402 (709)
Q Consensus 353 lyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~ 402 (709)
+-||+.---||- -..|..+..++.+.+++++++++.|.-.+|++..+-
T Consensus 616 llwaLvFnnsVp--v~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMI 663 (1258)
T KOG1053|consen 616 LLWALVFNNSVP--VENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMI 663 (1258)
T ss_pred HHHHHHhCCCcC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347776555543 345677889999999999999999998888887653
No 72
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=32.73 E-value=46 Score=37.79 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=53.5
Q ss_pred HHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCC
Q 005197 350 FYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRL 426 (709)
Q Consensus 350 ~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~ 426 (709)
+.|+||++.....-| -|+.|.....++...++-++-+++.+--.+|++..|. .|.|..-++.+++.-++..
T Consensus 597 fNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT-----vErMvsPIESaEDLAkQte 667 (897)
T KOG1054|consen 597 FNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT-----VERMVSPIESAEDLAKQTE 667 (897)
T ss_pred hHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh-----HHhhcCcchhHHHHhhcce
Confidence 469999999998766 4999999999999999999988888888888888764 3334444444555444443
No 73
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=31.95 E-value=2.1e+02 Score=21.15 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 005197 377 CFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDA 418 (709)
Q Consensus 377 ~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~e~~~k~~~~ 418 (709)
.++.+..+..++....+...++++-.....+.+++|..-+++
T Consensus 8 ~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~ 49 (53)
T PF01484_consen 8 VVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDA 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555666666666666677777777666554
No 74
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=31.37 E-value=89 Score=35.84 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005197 349 FFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQ 402 (709)
Q Consensus 349 Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~ 402 (709)
.-.++||+-..+..-|-|.-+|.+..-+++.++++=+.+++-|--.+|++..|.
T Consensus 614 lssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 614 LSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred hhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 445778666666666777789998888888888887777777777777776653
No 75
>PHA03029 hypothetical protein; Provisional
Probab=28.84 E-value=2.9e+02 Score=22.47 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=28.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 005197 372 YVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRL 408 (709)
Q Consensus 372 ~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~ 408 (709)
+..|.+|-++..++=.++.--+||.+-.++-+.++-.
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~r 38 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIR 38 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888877777788888888887776543
No 76
>COG1422 Predicted membrane protein [Function unknown]
Probab=28.54 E-value=2.1e+02 Score=28.29 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHH
Q 005197 385 SGLVLFSFLIGNMQTYLQSTT---TRLEEMRVKRRDAEQWMA 423 (709)
Q Consensus 385 ~G~~~fa~lig~~~~~l~~~~---~~~~e~~~k~~~~~~~m~ 423 (709)
+++++.|.++|...++++... .+.+++++.+++.++.++
T Consensus 48 lvilV~avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~ 89 (201)
T COG1422 48 LVILVAAVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFR 89 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 445666777788888887765 345555666666655554
No 77
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=28.36 E-value=1.2e+02 Score=20.82 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCC-----hhHHHHHHHHH
Q 005197 414 KRRDAEQWMAHRLLP-----DTLRERIRRYE 439 (709)
Q Consensus 414 k~~~~~~~m~~~~lp-----~~L~~rv~~y~ 439 (709)
+..++.++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 356788899999998 47888888874
No 78
>COG3109 ProQ Activator of osmoprotectant transporter ProP [Signal transduction mechanisms]
Probab=28.30 E-value=2.4e+02 Score=27.06 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=28.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHH
Q 005197 587 DDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACF 622 (709)
Q Consensus 587 ~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~ 622 (709)
+|+.+-++..+.+...+|+.+.|.|.+.||.|.-+.
T Consensus 40 QDl~e~lq~d~~vSktQLrqAlr~yts~wRYl~g~k 75 (208)
T COG3109 40 QDLAERLQDDENVSKTQLRQALRLYTSSWRYLYGVK 75 (208)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHhcccceeeecc
Confidence 455555666677889999999999999999998554
No 79
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.72 E-value=4.1e+02 Score=31.81 Aligned_cols=43 Identities=26% Similarity=0.317 Sum_probs=35.1
Q ss_pred hhCChhhHHHHHHHHHHhHhc-----cchhhccCcHHHHHHHHhhcce
Q 005197 456 CNLPKDLRRDIKRHLCLALLM-----RVPLFEKMDEQLLDALCDRLKP 498 (709)
Q Consensus 456 ~~Lp~~Lr~~i~~~~~~~~L~-----~v~lF~~ls~~~l~~L~~~l~~ 498 (709)
++||++||+.|..+....... .-.+++++|++....|+.++-.
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~ 418 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCL 418 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhH
Confidence 379999999999998776544 4578889999999999887744
No 80
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=27.69 E-value=2.1e+02 Score=28.11 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=32.6
Q ss_pred ceeeeCCCCEE---------EccCCCCCeEEEEEeeeEEEEEecC-CceeeeeeeecCCCCeee
Q 005197 497 KPVLYTEESYI---------VREGDPVDEMLFIMRGKLLTITTNG-GRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 497 ~~~~~~~ge~I---------~~eGd~~~~lyfI~~G~v~v~~~~~-g~~~~~~l~~l~~Gd~fG 550 (709)
-...+.||... +++.....++|+|++|...+...+. |. .. ...+.+||.+=
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~-~~--~~~v~pGd~v~ 131 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGE-AR--WIEMEPGTVVY 131 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCc-EE--EEEECCCCEEE
Confidence 34466777743 3333344599999999999776432 32 11 46789999864
No 81
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=24.81 E-value=1.6e+02 Score=32.13 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=34.4
Q ss_pred ceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecC-CceeeeeeeecCCCCeee
Q 005197 497 KPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNG-GRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 497 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~-g~~~~~~l~~l~~Gd~fG 550 (709)
....+.+|...-.--....++.+|++|.+++...+. |+. . ...+++||++-
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~-~--~~~L~~GD~~~ 121 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRN-Y--IDDVGAGDLWY 121 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcE-E--EeEECCCCEEE
Confidence 344677777553322345689999999999887543 443 2 24799999884
No 82
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=24.17 E-value=4.9e+02 Score=24.34 Aligned_cols=24 Identities=17% Similarity=0.027 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcc
Q 005197 132 ETTASVLRSFTDIFYIFHIILQFR 155 (709)
Q Consensus 132 ~~~~~~~~~~~di~f~~Di~l~f~ 155 (709)
...+.+++.+.-+...++.+....
T Consensus 30 ~~~~~~~d~~~~~~~~~~~~~~~~ 53 (200)
T PF00520_consen 30 RSWWNWFDFISVIPSIVSVILRSY 53 (200)
T ss_dssp CSHHHHHHHHHHHHHCCHHCCHCS
T ss_pred cChhhccccccccccccccccccc
Confidence 346777888887777777776654
No 83
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=23.47 E-value=73 Score=24.65 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=16.0
Q ss_pred HHHHhhCChhhHHHHHHHH
Q 005197 452 ENLLCNLPKDLRRDIKRHL 470 (709)
Q Consensus 452 ~~ll~~Lp~~Lr~~i~~~~ 470 (709)
-+++++||.+|++++...+
T Consensus 5 yelfqkLPDdLKrEvldY~ 23 (65)
T COG5559 5 YELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHHCcHHHHHHHHHHH
Confidence 3688999999999998765
No 84
>PRK08156 type III secretion system protein SpaS; Validated
Probab=23.25 E-value=2.4e+02 Score=30.69 Aligned_cols=66 Identities=9% Similarity=0.138 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005197 372 YVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRR 437 (709)
Q Consensus 372 ~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rv~~ 437 (709)
.....+...+..++..++.++++-.+..+.-+...-.++++-..+++++-.|+..-+|+++.|+|+
T Consensus 169 ~~~~~~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~R~ 234 (361)
T PRK08156 169 GLIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKRRE 234 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 344445555555555555566665555655555555555666667888888888888888888875
No 85
>COG4016 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.13 E-value=39 Score=30.80 Aligned_cols=11 Identities=55% Similarity=0.833 Sum_probs=8.4
Q ss_pred CCCCCCCCCCC
Q 005197 696 LQKPAEPDFTV 706 (709)
Q Consensus 696 ~~~~~~~~~~~ 706 (709)
--|||||||+-
T Consensus 62 ~i~pPEPd~~~ 72 (165)
T COG4016 62 DIKPPEPDFNY 72 (165)
T ss_pred CCCCCCCCcch
Confidence 35788999874
No 86
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=22.95 E-value=1.8e+02 Score=31.75 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=34.7
Q ss_pred cceeeeCCCCEEEccCCC-CCeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCee
Q 005197 496 LKPVLYTEESYIVREGDP-VDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFC 549 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~f 549 (709)
+....+.||...-.-=.+ .+++++|++|.+++... .+|+.. ...+++||++
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~---~~~l~~GD~~ 299 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNAR---TFDYQAGDVG 299 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEE---EEEECCCCEE
Confidence 455677788765433333 67999999999998763 333332 3579999976
No 87
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=22.77 E-value=4.4e+02 Score=27.83 Aligned_cols=76 Identities=11% Similarity=0.149 Sum_probs=47.2
Q ss_pred HHhhccccCCCCCCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 005197 356 GLRNLSSLGQNLETSTYVWEICFAVFISIS-GLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRER 434 (709)
Q Consensus 356 ~l~tlttvGygd~~~~~~~E~~~~i~~~i~-G~~~fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~r 434 (709)
++..++++|-+-..| +++.++-.+ +.+..+|++-.+..+.-+...-..+++-..+++++-.+..+=+|+++.+
T Consensus 164 t~~~lp~CG~~C~~~------Vv~~~~~~L~~g~~~~ylv~sv~Dy~fqr~~~~K~lkMSKdEVkRE~Kd~eG~PeiKsk 237 (349)
T COG4792 164 TFLYLPGCGLYCALP------VVSFLLRLLWVGVAVGYLVFSVADYAFQRYQILKELKMSKDEVKREYKDMEGDPEIKSK 237 (349)
T ss_pred HHhhccccccchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHhcccCCchhhHH
Confidence 466677777655444 233333333 3336677777777776666666666776677777777777777777766
Q ss_pred HHH
Q 005197 435 IRR 437 (709)
Q Consensus 435 v~~ 437 (709)
=|+
T Consensus 238 RRq 240 (349)
T COG4792 238 RRQ 240 (349)
T ss_pred HHH
Confidence 444
No 88
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=22.56 E-value=1.8e+02 Score=24.40 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=42.3
Q ss_pred hcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEE
Q 005197 495 RLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVR 574 (709)
Q Consensus 495 ~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~ 574 (709)
......+.||..+=.......+..||++|.+.. .+ ..+.+|++.=.- +. +..+..
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~~--------~~~~~G~~~~~p-------~g-------~~h~~~ 79 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---GD--------GRYGAGDWLRLP-------PG-------SSHTPR 79 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---TT--------CEEETTEEEEE--------TT-------EEEEEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---CC--------ccCCCCeEEEeC-------CC-------CccccC
Confidence 355668889988887777788888999999862 22 245788876322 11 255777
Q ss_pred Eeccceeee
Q 005197 575 ALTEVEAFA 583 (709)
Q Consensus 575 A~~~~~vl~ 583 (709)
+.++|.++.
T Consensus 80 s~~gc~~~v 88 (91)
T PF12973_consen 80 SDEGCLILV 88 (91)
T ss_dssp ESSCEEEEE
T ss_pred cCCCEEEEE
Confidence 888888775
No 89
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.02 E-value=1.2e+03 Score=26.49 Aligned_cols=134 Identities=16% Similarity=0.306 Sum_probs=85.2
Q ss_pred chhHHHHHHHHHHHH-----------------HHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHH
Q 005197 372 YVWEICFAVFISISG-----------------LVLFSFLIGNM--QTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLR 432 (709)
Q Consensus 372 ~~~E~~~~i~~~i~G-----------------~~~fa~lig~~--~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~ 432 (709)
-.-|+++++-+.-+- ..++-+++|.+ ++|+.+...-...+...+.+.++-|
T Consensus 180 ~~ReY~~S~YWStLTlTTiGe~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~m---------- 249 (536)
T KOG0500|consen 180 LTREYLYSLYWSTLTLTTIGEQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKM---------- 249 (536)
T ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHH----------
Confidence 456777777665542 44556666654 5777777777777777777776655
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHhhCChhhHHHHHHHHH-----HhHhccchhhccCcHHHHHHHHhhcceee-------
Q 005197 433 ERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLC-----LALLMRVPLFEKMDEQLLDALCDRLKPVL------- 500 (709)
Q Consensus 433 ~rv~~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~-----~~~L~~v~lF~~ls~~~l~~L~~~l~~~~------- 500 (709)
.-|+.|++|+ ++|..|+..+..-.. ......-...+.||+....+|+...+..+
T Consensus 250 DGiK~YM~~R--------------kV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF 315 (536)
T KOG0500|consen 250 DGIKQYMRYR--------------KVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIF 315 (536)
T ss_pred HHHHHHHHHh--------------cccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHH
Confidence 4578888877 578888888765432 22333345556677777777766554332
Q ss_pred ------------eCCCCEEEccCCCCCeEEEEEeeeEE--EEEecCCc
Q 005197 501 ------------YTEESYIVREGDPVDEMLFIMRGKLL--TITTNGGR 534 (709)
Q Consensus 501 ------------~~~ge~I~~eGd~~~~lyfI~~G~v~--v~~~~~g~ 534 (709)
.+-...++.+|| |+..+|.+- .+....|+
T Consensus 316 ~~ce~~lL~elVLklk~qvfSPgD-----yICrKGdvgkEMyIVk~G~ 358 (536)
T KOG0500|consen 316 QDCEAGLLVELVLKLKPQVFSPGD-----YICRKGDVGKEMYIVKEGK 358 (536)
T ss_pred HhcchhHHHHHHHHhcceeeCCCC-----eEEecCcccceEEEEEccE
Confidence 223456777777 788888875 33445555
No 90
>PRK06771 hypothetical protein; Provisional
Probab=21.83 E-value=5e+02 Score=22.35 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005197 391 SFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRR 437 (709)
Q Consensus 391 a~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rv~~ 437 (709)
.|+.-.+..+.+.+..+....+.+++.+.+.+..-...+.+.+.+++
T Consensus 15 i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~~~~~~~e~~~ 61 (93)
T PRK06771 15 IYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDREPPVNKELRQ 61 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHH
Confidence 34555556666666777777777766655554333332223344443
No 91
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=21.80 E-value=2.1e+02 Score=27.07 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=31.8
Q ss_pred CCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeee
Q 005197 514 VDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFAL 584 (709)
Q Consensus 514 ~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L 584 (709)
.+++.+|++|.+.+.. +|+ ....++||++= + |+.. +.+..+-+.++++..
T Consensus 95 YDEi~~VlEG~L~i~~--~G~-----~~~A~~GDvi~-------i-PkGs------~I~fst~~~a~~~Yv 144 (152)
T PF06249_consen 95 YDEIKYVLEGTLEISI--DGQ-----TVTAKPGDVIF-------I-PKGS------TITFSTPDYARFFYV 144 (152)
T ss_dssp SEEEEEEEEEEEEEEE--TTE-----EEEEETT-EEE-------E--TT-------EEEEEEEEEEEEEEE
T ss_pred cceEEEEEEeEEEEEE--CCE-----EEEEcCCcEEE-------E-CCCC------EEEEecCCCEEEEEE
Confidence 5789999999998863 455 45789999873 2 3322 555555566665544
No 92
>PRK09108 type III secretion system protein HrcU; Validated
Probab=21.64 E-value=2.1e+02 Score=31.09 Aligned_cols=65 Identities=9% Similarity=0.134 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005197 373 VWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRR 437 (709)
Q Consensus 373 ~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rv~~ 437 (709)
....++.++..++..++.++++-.+..+.-+...-.++++-..+++++-+|+..-+|+++.|+|+
T Consensus 177 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq 241 (353)
T PRK09108 177 LAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKR 241 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 34456666666666777777666666666666555666666677888888989999999988876
No 93
>PHA02909 hypothetical protein; Provisional
Probab=21.38 E-value=90 Score=23.77 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=26.3
Q ss_pred ccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005197 360 LSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQ 402 (709)
Q Consensus 360 lttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~ 402 (709)
|.+|.||+-.-.+..|.-|+|.+. .++|..++-.|-+++.
T Consensus 14 mlsvdygngkkvyytentfcimvs---filfviiflsmftila 53 (72)
T PHA02909 14 MLSVDYGNGKKVYYTENTFCIMVS---FILFVIIFLSMFTILA 53 (72)
T ss_pred EEEEecCCCeEEEEeccchhHHHH---HHHHHHHHHHHHHHHH
Confidence 456788887777777887776554 3555555555655554
No 94
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=21.21 E-value=2.8e+02 Score=30.04 Aligned_cols=66 Identities=8% Similarity=0.085 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005197 372 YVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRR 437 (709)
Q Consensus 372 ~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rv~~ 437 (709)
.....++..+..+++.++.++++-.+..+.-+.-.-.++++-..+++++-+|+..-+|+++.|+|+
T Consensus 173 ~~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~ 238 (342)
T TIGR01404 173 GLAPIVGELLKLLILVCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRE 238 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 334445555555566666555555555555555445555666667888888888999999888876
No 95
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=20.61 E-value=1.7e+02 Score=25.86 Aligned_cols=69 Identities=16% Similarity=0.273 Sum_probs=40.8
Q ss_pred CCChhHHHHHHHHHHHHHHhh---------cCC---C-HHHHHhhCChhhHHHHHHHHHHhHhc---------------c
Q 005197 426 LLPDTLRERIRRYEQYKWQET---------RGV---D-EENLLCNLPKDLRRDIKRHLCLALLM---------------R 477 (709)
Q Consensus 426 ~lp~~L~~rv~~y~~y~w~~~---------~~~---~-e~~ll~~Lp~~Lr~~i~~~~~~~~L~---------------~ 477 (709)
-||.++|..|..-..-.-... .+- + ..++|..||+++|.+|........-. .
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~ 87 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRERRRQERQQNARQHPQEMDN 87 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCH
Confidence 489999999855433221100 000 0 25899999999999998776443211 1
Q ss_pred chhhccCcHHHHHHHHh
Q 005197 478 VPLFEKMDEQLLDALCD 494 (709)
Q Consensus 478 v~lF~~ls~~~l~~L~~ 494 (709)
..++..|+++..+.++.
T Consensus 88 asflatl~p~LR~evL~ 104 (108)
T PF14377_consen 88 ASFLATLPPELRREVLL 104 (108)
T ss_pred HHHHHhCCHHHHHHHhh
Confidence 23445566666666554
No 96
>PRK11171 hypothetical protein; Provisional
Probab=20.39 E-value=2.1e+02 Score=29.66 Aligned_cols=49 Identities=20% Similarity=0.227 Sum_probs=37.9
Q ss_pred hcceeeeCCCCEEEc-cCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 495 RLKPVLYTEESYIVR-EGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 495 ~l~~~~~~~ge~I~~-eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
.+....++||..+-. +.....+.++|++|++.+.. +|+ ...+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL--NND-----WVEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 456678999999876 35667799999999999864 343 46799999875
No 97
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=20.24 E-value=6.8e+02 Score=29.57 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=33.4
Q ss_pred ccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCC-eEEEEEee
Q 005197 482 EKMDEQLLDALCDRLKPVLYTEESYIVREGDPVD-EMLFIMRG 523 (709)
Q Consensus 482 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~-~lyfI~~G 523 (709)
...+++..++.+..+.++...+|++|+++|+..+ +-|-++++
T Consensus 222 ~e~T~~~~~ea~~~v~~V~I~~gqiIv~~ge~It~~~~~~L~~ 264 (700)
T COG1480 222 EEQTENLRQEALSKVEPVKISKGQIIVKEGEIITDEDYVILDL 264 (700)
T ss_pred HHHHHHHHHHHHhccCceEEecCceEeecCceecHHHHHHHHH
Confidence 3567788889999999999999999999999766 34444443
Done!