Query 005197
Match_columns 709
No_of_seqs 606 out of 3231
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 18:20:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 9.8E-34 3.3E-38 306.3 18.5 342 84-608 3-346 (355)
2 3ukn_A Novel protein similar t 100.0 3.3E-31 1.1E-35 265.1 14.6 204 398-615 1-204 (212)
3 2ptm_A Hyperpolarization-activ 100.0 4.7E-30 1.6E-34 253.8 22.2 190 403-607 2-191 (198)
4 3bpz_A Potassium/sodium hyperp 100.0 1.1E-29 3.6E-34 252.2 22.3 190 402-607 2-191 (202)
5 1orq_C Potassium channel; volt 99.9 8.5E-22 2.9E-26 198.5 16.3 211 93-403 9-220 (223)
6 3dn7_A Cyclic nucleotide bindi 99.8 7.4E-20 2.5E-24 179.4 14.1 174 472-671 6-180 (194)
7 4f8a_A Potassium voltage-gated 99.8 6.5E-19 2.2E-23 166.7 15.9 142 451-607 5-148 (160)
8 2r9r_B Paddle chimera voltage 99.8 3.6E-19 1.2E-23 199.9 14.9 243 82-407 170-434 (514)
9 4ev0_A Transcription regulator 99.8 5.8E-18 2E-22 168.6 19.7 169 475-670 1-174 (216)
10 3dv8_A Transcriptional regulat 99.8 1.6E-17 5.6E-22 165.8 18.4 170 473-669 3-179 (220)
11 3fx3_A Cyclic nucleotide-bindi 99.7 1.2E-17 4.2E-22 169.0 14.6 173 470-669 8-188 (237)
12 3e97_A Transcriptional regulat 99.7 2.6E-17 9E-22 165.8 16.9 127 472-609 5-132 (231)
13 3dkw_A DNR protein; CRP-FNR, H 99.7 2.1E-17 7.2E-22 165.8 15.1 184 472-681 8-206 (227)
14 3d0s_A Transcriptional regulat 99.7 1.5E-17 5E-22 167.2 13.9 172 472-670 5-188 (227)
15 3gyd_A CNMP-BD protein, cyclic 99.7 6.1E-17 2.1E-21 158.2 16.3 152 451-613 13-169 (187)
16 3mdp_A Cyclic nucleotide-bindi 99.7 5.2E-17 1.8E-21 150.2 14.8 133 472-613 5-139 (142)
17 2gau_A Transcriptional regulat 99.7 8.2E-17 2.8E-21 162.3 17.4 168 476-670 13-191 (232)
18 3iwz_A CAP-like, catabolite ac 99.7 1.7E-16 5.6E-21 159.6 19.1 173 472-670 10-198 (230)
19 3ocp_A PRKG1 protein; serine/t 99.7 3.2E-17 1.1E-21 151.6 11.8 130 457-601 7-136 (139)
20 1wgp_A Probable cyclic nucleot 99.7 1.3E-17 4.5E-22 153.6 8.5 129 473-601 6-134 (137)
21 1zyb_A Transcription regulator 99.7 4.4E-17 1.5E-21 164.6 12.8 175 470-670 15-197 (232)
22 3idb_B CAMP-dependent protein 99.7 6E-17 2E-21 153.8 12.4 128 463-601 28-155 (161)
23 2fmy_A COOA, carbon monoxide o 99.7 7.9E-17 2.7E-21 161.1 13.1 164 473-670 4-178 (220)
24 2pqq_A Putative transcriptiona 99.7 2.4E-16 8.3E-21 146.8 14.3 124 472-606 4-128 (149)
25 2z69_A DNR protein; beta barre 99.7 3.4E-16 1.2E-20 146.8 14.4 128 472-609 11-139 (154)
26 1ft9_A Carbon monoxide oxidati 99.7 2E-16 7E-21 158.4 13.5 174 474-681 1-191 (222)
27 3ryp_A Catabolite gene activat 99.7 9.7E-16 3.3E-20 151.7 17.1 165 479-670 2-178 (210)
28 2oz6_A Virulence factor regula 99.7 9.1E-16 3.1E-20 151.6 16.7 160 484-670 1-175 (207)
29 1o5l_A Transcriptional regulat 99.7 2.2E-16 7.5E-21 157.3 12.2 167 478-671 4-176 (213)
30 1vp6_A CNBD, cyclic-nucleotide 99.6 1.6E-15 5.6E-20 139.5 13.9 122 471-609 9-130 (138)
31 3kcc_A Catabolite gene activat 99.6 3.6E-15 1.2E-19 153.4 16.3 161 482-669 55-227 (260)
32 3pna_A CAMP-dependent protein 99.6 2.7E-15 9.2E-20 141.3 13.5 118 469-601 34-151 (154)
33 3shr_A CGMP-dependent protein 99.6 9.4E-15 3.2E-19 153.2 15.5 134 453-601 19-152 (299)
34 3e6c_C CPRK, cyclic nucleotide 99.6 4.8E-15 1.7E-19 151.3 12.9 168 473-670 9-188 (250)
35 2a9h_A Voltage-gated potassium 99.6 4.4E-15 1.5E-19 139.4 11.1 64 346-409 82-145 (155)
36 4ava_A Lysine acetyltransferas 99.6 1.9E-14 6.6E-19 153.3 15.3 128 472-612 12-140 (333)
37 2d93_A RAP guanine nucleotide 99.5 2.2E-15 7.6E-20 138.3 5.0 124 459-597 2-127 (134)
38 3la7_A Global nitrogen regulat 99.5 5.6E-14 1.9E-18 142.8 15.5 160 486-670 30-204 (243)
39 3shr_A CGMP-dependent protein 99.5 2.1E-14 7E-19 150.6 12.3 129 469-608 153-283 (299)
40 2bgc_A PRFA; bacterial infecti 99.5 1.9E-13 6.4E-18 138.4 17.6 174 482-681 2-198 (238)
41 2qcs_B CAMP-dependent protein 99.5 1.5E-13 5E-18 143.3 16.4 127 467-608 33-159 (291)
42 2qcs_B CAMP-dependent protein 99.5 1.2E-13 4.2E-18 143.9 15.6 126 470-606 154-281 (291)
43 3tnp_B CAMP-dependent protein 99.5 1.1E-13 3.9E-18 152.0 15.6 127 464-601 136-262 (416)
44 3vou_A ION transport 2 domain 99.5 2.7E-13 9.1E-18 126.9 14.8 87 348-434 52-148 (148)
45 3of1_A CAMP-dependent protein 99.5 6.6E-14 2.2E-18 141.8 11.5 117 471-602 5-121 (246)
46 4h33_A LMO2059 protein; bilaye 99.5 2.7E-14 9.2E-19 131.6 7.6 93 348-440 43-135 (137)
47 3of1_A CAMP-dependent protein 99.5 9.7E-14 3.3E-18 140.6 12.1 118 470-601 122-239 (246)
48 4din_B CAMP-dependent protein 99.5 1.1E-13 3.7E-18 150.6 11.3 128 469-607 244-373 (381)
49 4din_B CAMP-dependent protein 99.4 3.3E-13 1.1E-17 146.7 13.0 125 466-605 123-247 (381)
50 2ih3_C Voltage-gated potassium 99.4 6.3E-13 2.2E-17 119.9 11.9 60 347-406 60-119 (122)
51 1o7f_A CAMP-dependent RAP1 gua 99.4 6.5E-13 2.2E-17 148.3 14.4 137 457-605 26-165 (469)
52 3tnp_B CAMP-dependent protein 99.4 4E-13 1.4E-17 147.6 11.4 124 471-605 265-395 (416)
53 3b02_A Transcriptional regulat 99.4 1.1E-12 3.6E-17 128.5 11.4 137 499-669 2-149 (195)
54 1o7f_A CAMP-dependent RAP1 gua 99.4 1.4E-12 4.9E-17 145.5 12.7 122 468-603 332-455 (469)
55 3eff_K Voltage-gated potassium 99.3 7.2E-12 2.5E-16 115.9 12.2 60 347-406 39-98 (139)
56 2zcw_A TTHA1359, transcription 99.3 2.5E-12 8.4E-17 126.5 9.5 143 492-669 1-156 (202)
57 4f7z_A RAP guanine nucleotide 99.3 1.3E-11 4.4E-16 150.5 14.7 136 453-601 23-161 (999)
58 3rvy_A ION transport protein; 99.3 1.4E-11 4.9E-16 128.2 12.2 61 346-406 178-244 (285)
59 3cf6_E RAP guanine nucleotide 99.3 9.7E-12 3.3E-16 144.6 11.5 133 452-599 12-146 (694)
60 4f7z_A RAP guanine nucleotide 99.1 1.4E-10 4.7E-15 141.4 13.9 115 469-597 333-449 (999)
61 2q67_A Potassium channel prote 99.1 2.1E-10 7.2E-15 101.9 11.4 60 348-407 49-108 (114)
62 2k1e_A Water soluble analogue 99.1 2.1E-11 7.2E-16 106.5 4.2 61 347-407 39-99 (103)
63 3ouf_A Potassium channel prote 99.1 5.3E-10 1.8E-14 96.3 10.9 57 348-404 32-88 (97)
64 3ldc_A Calcium-gated potassium 99.0 1.3E-09 4.4E-14 90.8 7.6 54 348-401 28-81 (82)
65 3pjs_K KCSA, voltage-gated pot 98.9 7.1E-11 2.4E-15 112.5 -0.9 64 347-410 66-129 (166)
66 1xl4_A Inward rectifier potass 98.8 1.2E-08 4E-13 106.1 10.8 56 347-402 81-136 (301)
67 1p7b_A Integral membrane chann 98.8 1.1E-08 3.6E-13 107.6 8.3 58 348-405 96-153 (333)
68 3um7_A Potassium channel subfa 98.7 4E-08 1.4E-12 101.8 10.2 57 348-404 115-171 (309)
69 2qks_A KIR3.1-prokaryotic KIR 98.7 5.4E-08 1.8E-12 101.9 10.9 58 348-405 78-135 (321)
70 3sya_A G protein-activated inw 98.6 2.9E-07 9.9E-12 96.5 11.9 60 347-406 90-151 (340)
71 4gx0_A TRKA domain protein; me 98.5 5.5E-07 1.9E-11 102.7 12.2 55 348-402 51-106 (565)
72 3spc_A Inward-rectifier K+ cha 98.4 1.1E-06 3.9E-11 92.1 11.9 59 347-405 93-153 (343)
73 4dxw_A Navrh, ION transport pr 98.4 7.2E-06 2.5E-10 82.0 16.3 75 93-197 13-88 (229)
74 3ukm_A Potassium channel subfa 98.4 5.5E-07 1.9E-11 91.8 7.9 55 348-402 93-147 (280)
75 3um7_A Potassium channel subfa 98.3 2E-07 7E-12 96.5 3.3 60 348-407 224-289 (309)
76 3ukm_A Potassium channel subfa 98.2 6.4E-07 2.2E-11 91.3 5.2 57 349-405 202-265 (280)
77 1lnq_A MTHK channels, potassiu 98.1 3E-07 1E-11 97.8 -1.9 56 349-404 46-101 (336)
78 2kyh_A KVAP, voltage-gated pot 97.7 7.8E-05 2.7E-09 68.8 7.5 78 93-200 22-99 (147)
79 1ors_C Potassium channel; volt 97.4 0.00019 6.5E-09 65.1 5.8 80 92-201 6-85 (132)
80 3rns_A Cupin 2 conserved barre 73.4 11 0.00037 36.7 8.7 68 496-584 39-106 (227)
81 3fjs_A Uncharacterized protein 73.2 12 0.00042 31.8 8.1 67 496-583 38-104 (114)
82 2ozj_A Cupin 2, conserved barr 70.9 12 0.0004 31.6 7.4 64 500-584 44-107 (114)
83 3kg2_A Glutamate receptor 2; I 65.6 7.3 0.00025 45.5 6.6 55 348-403 563-617 (823)
84 1yhf_A Hypothetical protein SP 62.0 25 0.00086 29.3 7.8 68 496-584 42-109 (115)
85 2pfw_A Cupin 2, conserved barr 60.6 28 0.00096 29.1 7.9 68 496-584 36-103 (116)
86 3lwc_A Uncharacterized protein 59.6 19 0.00064 31.1 6.5 45 498-550 44-88 (119)
87 1yfu_A 3-hydroxyanthranilate-3 56.5 28 0.00097 32.2 7.3 35 513-550 54-88 (174)
88 4e2g_A Cupin 2 conserved barre 52.4 38 0.0013 28.8 7.4 48 496-550 43-90 (126)
89 1o5u_A Novel thermotoga mariti 48.6 51 0.0017 27.4 7.2 47 496-550 33-79 (101)
90 1zvf_A 3-hydroxyanthranilate 3 48.5 38 0.0013 31.3 6.7 36 513-550 53-91 (176)
91 3d0j_A Uncharacterized protein 47.9 32 0.0011 30.7 5.9 64 508-586 44-109 (140)
92 3rns_A Cupin 2 conserved barre 45.4 41 0.0014 32.4 7.1 68 496-584 155-223 (227)
93 2gu9_A Tetracenomycin polyketi 45.0 31 0.0011 28.4 5.5 47 497-550 24-73 (113)
94 1v70_A Probable antibiotics sy 43.5 38 0.0013 27.3 5.7 47 497-550 31-78 (105)
95 2qnk_A 3-hydroxyanthranilate 3 43.1 49 0.0017 33.0 7.1 59 511-586 48-106 (286)
96 1dgw_A Canavalin; duplicated s 41.0 27 0.00092 32.4 4.8 52 496-550 43-94 (178)
97 3h8u_A Uncharacterized conserv 40.8 34 0.0012 29.0 5.2 49 496-550 41-90 (125)
98 4axo_A EUTQ, ethanolamine util 40.3 56 0.0019 29.5 6.6 31 513-550 83-113 (151)
99 2q30_A Uncharacterized protein 38.0 98 0.0034 25.1 7.6 48 497-550 36-85 (110)
100 3d82_A Cupin 2, conserved barr 38.0 54 0.0018 26.3 5.8 51 514-585 50-100 (102)
101 3es4_A Uncharacterized protein 37.9 33 0.0011 29.5 4.4 44 500-550 48-91 (116)
102 3bcw_A Uncharacterized protein 36.9 24 0.0008 30.7 3.4 44 500-550 55-98 (123)
103 2kxw_B Sodium channel protein 36.8 32 0.0011 21.5 2.9 20 615-634 4-23 (27)
104 2l53_B CAM, voltage-gated sodi 36.3 34 0.0012 22.1 3.1 20 615-634 4-23 (31)
105 4i4a_A Similar to unknown prot 35.7 1.9E+02 0.0065 24.2 9.3 79 498-597 38-120 (128)
106 2i45_A Hypothetical protein; n 35.4 29 0.00099 28.7 3.7 67 502-588 36-102 (107)
107 2bnm_A Epoxidase; oxidoreducta 34.6 47 0.0016 30.9 5.4 49 499-550 122-173 (198)
108 4b29_A Dimethylsulfoniopropion 33.9 56 0.0019 31.4 5.7 45 500-550 138-182 (217)
109 3ibm_A Cupin 2, conserved barr 33.9 48 0.0016 30.3 5.2 47 497-550 59-105 (167)
110 1fi2_A Oxalate oxidase, germin 32.7 75 0.0026 29.8 6.5 53 496-550 74-130 (201)
111 2fqp_A Hypothetical protein BP 30.9 27 0.00092 28.4 2.6 49 497-550 21-70 (97)
112 2o1q_A Putative acetyl/propion 30.7 62 0.0021 28.7 5.2 50 496-550 46-95 (145)
113 3es1_A Cupin 2, conserved barr 29.6 48 0.0016 30.7 4.3 48 496-549 81-128 (172)
114 2b8m_A Hypothetical protein MJ 29.3 50 0.0017 27.6 4.2 45 499-550 32-77 (117)
115 1lr5_A Auxin binding protein 1 29.3 51 0.0018 29.6 4.5 51 497-550 44-99 (163)
116 2q1z_B Anti-sigma factor CHRR, 29.1 73 0.0025 29.9 5.7 45 495-550 126-170 (195)
117 3jzv_A Uncharacterized protein 27.8 46 0.0016 30.4 3.9 45 499-550 58-102 (166)
118 1vj2_A Novel manganese-contain 27.8 57 0.002 27.9 4.4 46 498-550 52-97 (126)
119 2f4p_A Hypothetical protein TM 27.7 82 0.0028 27.8 5.5 48 497-550 51-98 (147)
120 3kgz_A Cupin 2 conserved barre 27.4 45 0.0016 30.1 3.8 44 500-550 50-93 (156)
121 1y9q_A Transcriptional regulat 27.2 85 0.0029 28.9 5.8 45 499-550 109-155 (192)
122 3i7d_A Sugar phosphate isomera 27.1 52 0.0018 29.8 4.1 47 497-550 46-94 (163)
123 2opk_A Hypothetical protein; p 27.0 60 0.0021 27.2 4.3 34 512-550 51-84 (112)
124 3l2h_A Putative sugar phosphat 26.5 51 0.0018 29.6 4.0 46 497-549 49-96 (162)
125 2pyt_A Ethanolamine utilizatio 25.9 1.5E+02 0.0051 25.8 6.8 44 498-550 61-104 (133)
126 2vqa_A SLL1358 protein, MNCA; 25.9 91 0.0031 32.1 6.3 51 497-550 55-107 (361)
127 1o4t_A Putative oxalate decarb 25.5 62 0.0021 28.0 4.2 46 498-550 61-107 (133)
128 1j58_A YVRK protein; cupin, de 24.5 90 0.0031 32.5 6.0 52 496-550 81-133 (385)
129 3lag_A Uncharacterized protein 24.4 28 0.00096 28.7 1.6 49 497-549 20-69 (98)
130 1uij_A Beta subunit of beta co 24.3 65 0.0022 34.3 4.8 53 495-550 50-102 (416)
131 1sfn_A Conserved hypothetical 24.0 2.4E+02 0.0081 27.2 8.6 44 498-550 54-97 (246)
132 2vqa_A SLL1358 protein, MNCA; 23.7 1.2E+02 0.0043 31.0 6.9 52 496-550 236-289 (361)
133 1sfn_A Conserved hypothetical 23.0 82 0.0028 30.6 5.0 49 495-550 166-215 (246)
134 1fxz_A Glycinin G1; proglycini 22.3 1.1E+02 0.0038 33.1 6.2 54 495-550 339-394 (476)
135 2ea7_A 7S globulin-1; beta bar 21.7 74 0.0025 34.1 4.6 53 495-550 62-114 (434)
136 3bu7_A Gentisate 1,2-dioxygena 21.6 64 0.0022 34.1 4.0 48 497-550 126-173 (394)
137 3h7j_A Bacilysin biosynthesis 21.6 92 0.0032 30.1 5.0 47 496-549 36-82 (243)
138 2d5f_A Glycinin A3B4 subunit; 21.6 1.3E+02 0.0045 32.7 6.6 60 489-550 362-423 (493)
139 3c3v_A Arachin ARAH3 isoform; 21.4 1.2E+02 0.004 33.2 6.1 59 490-550 368-428 (510)
140 2d40_A Z3393, putative gentisa 21.1 1.7E+02 0.0057 30.3 7.1 71 498-589 272-342 (354)
141 2oa2_A BH2720 protein; 1017534 21.0 1.2E+02 0.0041 26.6 5.3 51 498-549 47-98 (148)
142 2cav_A Protein (canavalin); vi 21.0 80 0.0027 33.9 4.7 53 495-550 87-139 (445)
143 3ht1_A REMF protein; cupin fol 20.9 74 0.0025 27.5 3.8 46 500-550 45-90 (145)
144 2vpv_A Protein MIF2, MIF2P; nu 20.6 59 0.002 29.9 3.0 31 513-550 109-139 (166)
145 1j58_A YVRK protein; cupin, de 20.3 1.3E+02 0.0043 31.3 6.1 52 496-550 259-312 (385)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=9.8e-34 Score=306.30 Aligned_cols=342 Identities=19% Similarity=0.246 Sum_probs=128.8
Q ss_pred eCCCChHHHHHHHHHHHHHHHHHHhhhhhceeeeecCCcceeecCccchhHHHHHHHHHHHHHHHHHHHhcceeEEcCCC
Q 005197 84 LDPQGAFLQKWNKIFVLSCVIAVSLDPLFFYVPVINGDRKCVDLDKKMETTASVLRSFTDIFYIFHIILQFRTGFIAPSS 163 (709)
Q Consensus 84 i~P~s~~~~~W~~~~~i~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~di~f~~Di~l~f~t~y~~~~~ 163 (709)
+.|.|+.. +.++++++++++++.-+.. .|.. .......+..++.++-++|.+|+++++..+ +.
T Consensus 3 ~~p~s~~f---~~~~~~~i~ls~~~~~~~t-~~~~---------~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~---~~- 65 (355)
T 3beh_A 3 VLPFLRIY---APLNAVLAAPGLLAVAALT-IPDM---------SGRSRLALAALLAVIWGAYLLQLAATLLKR---RA- 65 (355)
T ss_dssp ----CCSS---SSHHHHHHHHHHHHHHHHT-SSSC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CS-
T ss_pred CCchhHHH---HHHHHHHHHHHHHHHHHHc-ccch---------hhhHHHHHHHHHhHHHHHHHHHHHHhcccc---cc-
Confidence 45777744 4555555556665555542 2211 111122344556666667899999998532 11
Q ss_pred cccCCCeEecCHHHHHHHHhhh-hHHHHHHhh-CChhhhhhheeecCCCCcchhcchhhHHHHHHHhhhhhhhhhhHhHH
Q 005197 164 RVFGRGVLVEDTWLIAKKYMSS-HFLVDILAV-LPLPQVVILIIIPNMGGSEVVNTKNLLKFVVLFQYVPRFLRIYPLYK 241 (709)
Q Consensus 164 ~~~~~g~lV~d~~~Ia~~Yl~~-~F~iDlls~-lP~~~i~~~~~~~~~~~~~~~~~~~~Lr~i~l~~~l~Rl~ri~~l~~ 241 (709)
..+|.++ |.++|++++ +|+..++. + +...+ +++|++| +.|+.|..+..+
T Consensus 66 ---------------~~~~~~~~~~i~Dl~~i~~p~~~~~~----~---~~~~~---r~lr~~R----~lrl~r~~~~~~ 116 (355)
T 3beh_A 66 ---------------GVVRDRTPKIAIDVLAVLVPLAAFLL----D---GSPDW---SLYCAVW----LLKPLRDSTFFP 116 (355)
T ss_dssp ---------------CSSCCCHHHHHHHHHHHHHHHHHHHS----C---CSGGG---GGGGGGG----GSHHHHTCSSHH
T ss_pred ---------------cceeccCcchHHHHHHHHHHHHHHHh----c---cchhH---HHHHHHH----HHHHHHHHHHHH
Confidence 0123334 899999999 68864432 1 11122 2222221 233333333333
Q ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhchhhccccccCCCCccccccCCCccccccccccCCCCC
Q 005197 242 EVTRTSGILTETAWAGAAFNLFLYMLASHVLGASWYLFSIERETTCWKGHCKMDNGCKLYCDDGQGNNAFLGDFCPIQPA 321 (709)
Q Consensus 242 ~i~~~~~~~~~~~~~~~~~~ll~~~l~~H~~ac~wy~i~~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~Wl~~~~~~~~~ 321 (709)
.+.+... . .....+..+++++++.|+.||++|.+....
T Consensus 117 ~l~~~l~---~-~~~~l~~~~~~~~~~~~~~a~~~~~~e~~~-------------------------------------- 154 (355)
T 3beh_A 117 VLGRVLA---N-EARNLIGVTTLFGVVLFAVALAAYVIERDI-------------------------------------- 154 (355)
T ss_dssp HHHHHHH---H-THHHHHHHHHHHHHHHHHHHHHHHHHHTTT--------------------------------------
T ss_pred HHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------------------------------------
Confidence 3322211 1 111223334445568899999999875210
Q ss_pred CCCcccchhhhhhhhcCcccCCChhhHHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005197 322 DTKLFNFGIFLGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYL 401 (709)
Q Consensus 322 ~~~~~~~g~~~~~l~~~~~~~~~~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l 401 (709)
+++.+..|..|+||+++|+||+||||++|.+..|++++++++++|++++++++|.+.+.+
T Consensus 155 --------------------~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~ 214 (355)
T 3beh_A 155 --------------------QPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGF 214 (355)
T ss_dssp --------------------CHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112244689999999999999999999999999999999999999999999999998876
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhhHHHHHHHHHHhHhccchhh
Q 005197 402 QSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLALLMRVPLF 481 (709)
Q Consensus 402 ~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rv~~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF 481 (709)
+....+ +++. ...+.++++++|
T Consensus 215 ~~~~~~----------------------------~~~~------------------------------~~~~~l~~~~lf 236 (355)
T 3beh_A 215 YQEVRR----------------------------GDFV------------------------------RNWQLVAAVPLF 236 (355)
T ss_dssp HHHHHH----------------------------HHHH------------------------------HHHC--------
T ss_pred HHHHHH----------------------------Hhhc------------------------------ccchhhhccccc
Confidence 532111 0000 024678889999
Q ss_pred ccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCC
Q 005197 482 EKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQ 561 (709)
Q Consensus 482 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~ 561 (709)
++++++++++++..++.+.++|||+|+++||+++++|+|.+|.++++..+ + ..+++|++|||.++ +.+.
T Consensus 237 ~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~---~-----~~l~~G~~fGe~~~---l~~~ 305 (355)
T 3beh_A 237 QKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFGEMAL---ISGE 305 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC---e-----eEECCCCEEeehHH---hCCC
Confidence 99999999999999999999999999999999999999999999998754 1 47899999999987 3444
Q ss_pred CCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHH
Q 005197 562 SSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTF 608 (709)
Q Consensus 562 ~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~ 608 (709)
++ +++++|.++|+++.+++++|+++++++|++.....+...
T Consensus 306 ~~------~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~ 346 (355)
T 3beh_A 306 PR------SATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTAL 346 (355)
T ss_dssp -----------------------------------------------
T ss_pred Cc------ceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHH
Confidence 43 789999999999999999999999999998776555443
No 2
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=3.3e-31 Score=265.05 Aligned_cols=204 Identities=24% Similarity=0.384 Sum_probs=175.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhhHHHHHHHHHHhHhcc
Q 005197 398 QTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLALLMR 477 (709)
Q Consensus 398 ~~~l~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rv~~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~ 477 (709)
++++++++.+..+|+++++.+++||+++++|++|+.||++|++|.|.++++.|++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999988877 8
Q ss_pred chhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhh
Q 005197 478 VPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWA 557 (709)
Q Consensus 478 v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~ 557 (709)
+|+|++++++++..++..++.+.|+||++|+++||+++.+|||.+|.|+++. +| .+ +..+++|++||+.+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~--~~--~~--~~~l~~G~~fGe~~~~-- 151 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK--DN--TV--LAILGKGDLIGSDSLT-- 151 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES--SS--CE--EEEECTTCEEECSCCS--
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE--CC--eE--EEEecCCCCcCcHHhc--
Confidence 9999999999999999999999999999999999999999999999999986 23 22 7899999999999874
Q ss_pred cCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhH
Q 005197 558 LDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQW 615 (709)
Q Consensus 558 l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~ 615 (709)
.+.. +.++++++|+++|+++.|++++|.+++.++|++....++...+.++...
T Consensus 152 -~~~~----~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~l 204 (212)
T 3ukn_A 152 -KEQV----IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNL 204 (212)
T ss_dssp -SSSC----CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEEC
T ss_pred -cCCC----CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhcccc
Confidence 3330 0248899999999999999999999999999999888877766555443
No 3
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=4.7e-30 Score=253.79 Aligned_cols=190 Identities=23% Similarity=0.430 Sum_probs=173.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhhHHHHHHHHHHhHhccchhhc
Q 005197 403 STTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLALLMRVPLFE 482 (709)
Q Consensus 403 ~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rv~~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~ 482 (709)
+++.+..+|+++++.+++||+++++|++|+.||++|++|.|. +++.+++++++.||++||.++..+++.++++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 567889999999999999999999999999999999999998 4789999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCCC
Q 005197 483 KMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQS 562 (709)
Q Consensus 483 ~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~ 562 (709)
+++++++..++..++.+.|+||++|+++||+++.+|||.+|.|+++. .+|+ + +..+++|++||+.+++ .+.+
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~-~~g~--~--~~~l~~G~~fGe~~~~---~~~~ 152 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM-SDGV--I--ATSLSDGSYFGEICLL---TRER 152 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC-TTSC--E--EEEECTTCEESCHHHH---HSSC
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe-cCCe--E--EEEecCCCEechHHHc---CCCc
Confidence 99999999999999999999999999999999999999999999987 4454 3 7899999999999885 3333
Q ss_pred CCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHH
Q 005197 563 SSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHT 607 (709)
Q Consensus 563 ~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~ 607 (709)
++++++|.++|+++.|++++|.++++++|++....++.+
T Consensus 153 ------~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~ 191 (198)
T 2ptm_A 153 ------RVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIA 191 (198)
T ss_dssp ------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ------cceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHH
Confidence 378999999999999999999999999999877655544
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=1.1e-29 Score=252.17 Aligned_cols=190 Identities=26% Similarity=0.438 Sum_probs=171.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhhHHHHHHHHHHhHhccchhh
Q 005197 402 QSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLALLMRVPLF 481 (709)
Q Consensus 402 ~~~~~~~~e~~~k~~~~~~~m~~~~lp~~L~~rv~~y~~y~w~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF 481 (709)
++++.+..+|+++++++++||+++++|++|+.||++|++|.|.. ++.+++++++.||++||.++..+.+.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 46788999999999999999999999999999999999999974 78999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCC
Q 005197 482 EKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQ 561 (709)
Q Consensus 482 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~ 561 (709)
.+++++++..++..++.+.|+||++|+++||+++.+|||.+|.|+++. .+|++ ..+++|++||+.+++ .+.
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~-~~g~~-----~~l~~G~~fGe~~~~---~~~ 151 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT-KGNKE-----MKLSDGSYFGEICLL---TRG 151 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC-TTSCC-----EEEETTCEECHHHHH---HCS
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE-CCCeE-----EEEcCCCEeccHHHh---cCC
Confidence 999999999999999999999999999999999999999999999976 34543 368999999999885 333
Q ss_pred CCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHH
Q 005197 562 SSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHT 607 (709)
Q Consensus 562 ~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~ 607 (709)
+ ++++++|.++|+++.|++++|..+++++|++.....+.+
T Consensus 152 ~------~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~ 191 (202)
T 3bpz_A 152 R------RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVA 191 (202)
T ss_dssp B------CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHH
T ss_pred C------cccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
Confidence 3 378999999999999999999999999998776555443
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.87 E-value=8.5e-22 Score=198.48 Aligned_cols=211 Identities=13% Similarity=0.148 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhceeeeecCCcceeecCccchhHHHHHHHHHHHHHHHHHHHhcceeEEcCCCcccCCCeEe
Q 005197 93 KWNKIFVLSCVIAVSLDPLFFYVPVINGDRKCVDLDKKMETTASVLRSFTDIFYIFHIILQFRTGFIAPSSRVFGRGVLV 172 (709)
Q Consensus 93 ~W~~~~~i~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~di~f~~Di~l~f~t~y~~~~~~~~~~g~lV 172 (709)
.||.+++++.++++++.++....+ .+......+..+|.+++++|.+|++++|.++.
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~----------~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~-------------- 64 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQ----------LSGEYLVRLYLVDLILVIILWADYAYRAYKSG-------------- 64 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHH----------HTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc----------cChhhhhHHHHHHHHHHHHHHHHHHHHHcccc--------------
Confidence 489998888888888777653211 12234567889999999999999999999862
Q ss_pred cCHHHHHHHHhhhhHHHHHHhhCChhhhhhheeecCCCCcchhcchhhHHHHHHHhhhhhhhhhhHhHHHH-HhhhchhH
Q 005197 173 EDTWLIAKKYMSSHFLVDILAVLPLPQVVILIIIPNMGGSEVVNTKNLLKFVVLFQYVPRFLRIYPLYKEV-TRTSGILT 251 (709)
Q Consensus 173 ~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~~Lr~i~l~~~l~Rl~ri~~l~~~i-~~~~~~~~ 251 (709)
..++|+++ +++|+++++|+....... ... .....+|++|+++ +.|++|+.+..+.. ........
T Consensus 65 -----~~~~y~~~-~iiDllailP~~~~~~~~-------~~~-~~~~~lr~lRllR-llR~~r~~~~~~~~~~~l~~~~~ 129 (223)
T 1orq_C 65 -----DPAGYVKK-TLYEIPALVPAGLLALIE-------GHL-AGLGLFRLVRLLR-FLRILLIISRGSKFLSAIADAAD 129 (223)
T ss_dssp -----CHHHHHHH-HHHHCTTHHHHHHHHHHH-------HHH-HTTTCHHHHHHHH-HHHHHHHHHSCSSHHHHHHHHHH
T ss_pred -----cHHHHHHH-hHHHHHHHHHHHHHHHHh-------cch-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 13799998 999999999997654210 000 0012334333222 23333333311111 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhchhhccccccCCCCccccccCCCccccccccccCCCCCCCCcccchhh
Q 005197 252 ETAWAGAAFNLFLYMLASHVLGASWYLFSIERETTCWKGHCKMDNGCKLYCDDGQGNNAFLGDFCPIQPADTKLFNFGIF 331 (709)
Q Consensus 252 ~~~~~~~~~~ll~~~l~~H~~ac~wy~i~~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~g~~ 331 (709)
. .+....+++.++..|+.||++|.+... +
T Consensus 130 ~---~~l~~~~~~~~~~~~~~~~~~~~~e~~------------------------~------------------------ 158 (223)
T 1orq_C 130 K---IRFYHLFGAVMLTVLYGAFAIYIVEYP------------------------D------------------------ 158 (223)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHTTSS------------------------S------------------------
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHhC------------------------C------------------------
Confidence 1 112223333445788999998875310 0
Q ss_pred hhhhhcCcccCCChhhHHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005197 332 LGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQS 403 (709)
Q Consensus 332 ~~~l~~~~~~~~~~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~ 403 (709)
.++....|..|+||+++|+||+||||++|.+..|++++++++++|++++|+.+|.+++.+++
T Consensus 159 ----------~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 159 ----------PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp ----------TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01123469999999999999999999999999999999999999999999999999998875
No 6
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.82 E-value=7.4e-20 Score=179.44 Aligned_cols=174 Identities=9% Similarity=0.075 Sum_probs=119.6
Q ss_pred HhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEE-ecCCceeeeeeeecCCCCeee
Q 005197 472 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 472 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~-~~~g~~~~~~l~~l~~Gd~fG 550 (709)
..++++++.|.++++++++.+...++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +..+++|++||
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~--~~~~~~g~~~g 83 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQT--TQFAIENWWLS 83 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEE--EEEccCCcEEe
Confidence 4577889999999999999999999999999999999999999999999999999988 45788776 78999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHH
Q 005197 551 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRY 630 (709)
Q Consensus 551 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~ 630 (709)
+...+ +.+.+. .++++|+++|+++.|++++|.+++.++|++....++... ......
T Consensus 84 e~~~~--~~~~~~------~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~----------------~~l~~~ 139 (194)
T 3dn7_A 84 DYMAF--QKQQPA------DFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQ----------------KSFAAA 139 (194)
T ss_dssp CHHHH--HHTCBC------SSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHH----------------HHHHHH
T ss_pred ehHHH--hcCCCC------ceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHH----------------HHHHHH
Confidence 87433 334443 679999999999999999999999999988764444332 233445
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCccchHhHhHHHH
Q 005197 631 SKKKLEESLRAEENRLQDALAKAGGSSPSLGATIYASRFAA 671 (709)
Q Consensus 631 ~~r~~~~~~~~~eery~~~~~~~p~~~~~~~~~~iASr~~~ 671 (709)
.++.......++++||..++.+.|++..+++++.+|+-+..
T Consensus 140 ~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~ 180 (194)
T 3dn7_A 140 QLRSKFQHMYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGF 180 (194)
T ss_dssp HHHHHHHHHC-------------------------------
T ss_pred HHHHHHHhcCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCC
Confidence 66667777888999999999999999999999998886654
No 7
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.80 E-value=6.5e-19 Score=166.74 Aligned_cols=142 Identities=27% Similarity=0.394 Sum_probs=119.3
Q ss_pred HHHHHhhCChhhHHHHHHHHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe
Q 005197 451 EENLLCNLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT 530 (709)
Q Consensus 451 e~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~ 530 (709)
.+++++.||++||.++..+++.++++++++|.+++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++..
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~ 84 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQD 84 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999872
Q ss_pred cCCceeeeeeeecCCCCeeehhhhhhhcCC--CCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHH
Q 005197 531 NGGRTGFFNSEYLGAGDFCGEELLTWALDP--QSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHT 607 (709)
Q Consensus 531 ~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~--~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~ 607 (709)
+ .+ +..+++|++||+.+++ .+ .+ +.++++|.++|+++.|++++|.++++++|.+....++..
T Consensus 85 --~--~~--~~~~~~G~~fG~~~~~---~~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 85 --D--EV--VAILGKGDVFGDVFWK---EATLAQ------SCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp --T--EE--EEEEETTCEEECCTTT---CSSCCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred --C--EE--EEEecCCCEeCcHHHh---cCcccc------eEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23 7899999999999874 33 23 478999999999999999999999999999887665543
No 8
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.79 E-value=3.6e-19 Score=199.87 Aligned_cols=243 Identities=12% Similarity=0.214 Sum_probs=150.7
Q ss_pred cee-CCC-ChHHHHHHHHHHHHHHHHHHhhhhhceeeeecCCcc----e-------------eecCccchhHHHHHHHHH
Q 005197 82 KVL-DPQ-GAFLQKWNKIFVLSCVIAVSLDPLFFYVPVINGDRK----C-------------VDLDKKMETTASVLRSFT 142 (709)
Q Consensus 82 ~ii-~P~-s~~~~~W~~~~~i~~~~~~~~~P~~~~~~~~~~~~~----c-------------~~~~~~~~~~~~~~~~~~ 142 (709)
.++ +|. |...+.|+.++++++++++++..+.. .|....... + ..........+.+++.++
T Consensus 170 ~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~ 248 (514)
T 2r9r_B 170 LLFEYPESSGPARIIAIVSVMVILISIVSFCLET-LPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLC 248 (514)
T ss_dssp HTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhc-cccccccccccccccccccccccccccccccchhhhHHHHHHHHH
Confidence 344 476 56778888888888888887776653 232211100 0 000011345788999999
Q ss_pred HHHHHHHHHHhcceeEEcCCCcccCCCeEecCHHHHHHHHhhh-hHHHHHHhhCChhhhhhheeecCCCCcc-hhcchhh
Q 005197 143 DIFYIFHIILQFRTGFIAPSSRVFGRGVLVEDTWLIAKKYMSS-HFLVDILAVLPLPQVVILIIIPNMGGSE-VVNTKNL 220 (709)
Q Consensus 143 di~f~~Di~l~f~t~y~~~~~~~~~~g~lV~d~~~Ia~~Yl~~-~F~iDlls~lP~~~i~~~~~~~~~~~~~-~~~~~~~ 220 (709)
.++|.+|++++|.++- . .++|+++ |.++|+++++|+...+.... ...... .......
T Consensus 249 ~~iFtiE~ilR~~~~~---~----------------k~~Y~ks~wniiDli~iip~~i~l~~~~--~~~~~~~~~~~~~~ 307 (514)
T 2r9r_B 249 IIWFSFEFLVRFFACP---S----------------KAGFFTNIMNIIDIVAIIPYYVTIFLTE--SNKSVLQFQNVRRV 307 (514)
T ss_dssp HHHHHHHHHHHHHHSS---C----------------SSSSTTSHHHHHHHHTTHHHHHHHHHHH--TSCSHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHhCC---c----------------HHHHHhchhHHHHHHHHHHHHHHHHhhh--ccccchhhhhHHHH
Confidence 9999999999999751 0 1479998 89999999999865543211 000111 0111234
Q ss_pred HHHHHHHhhhhhhhhhhHhHHHHHhhhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhhchhhccccccCCCCcc
Q 005197 221 LKFVVLFQYVPRFLRIYPLYKEVTRTSGILTETAWAGAAFNLFL-YMLASHVLGASWYLFSIERETTCWKGHCKMDNGCK 299 (709)
Q Consensus 221 Lr~i~l~~~l~Rl~ri~~l~~~i~~~~~~~~~~~~~~~~~~ll~-~~l~~H~~ac~wy~i~~~~~~~~w~~~~~~~~~c~ 299 (709)
+|++|+++ +.|++|+.+....+......+... ...+..+++ .++..+++||++|++.. .
T Consensus 308 lrvlRllR-vlRilkL~r~~~~l~~l~~tl~~s--~~~l~~ll~~l~i~~~if~~~~~~~e~--~--------------- 367 (514)
T 2r9r_B 308 VQIFRIMR-ILRIFKLSRHSKGLQILGQTLKAS--MRELGLLIFFLFIGVILFSSAVYFAEA--D--------------- 367 (514)
T ss_dssp HHHHHHHG-GGGGGGGGGSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHHT--T---------------
T ss_pred HHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhheeec--c---------------
Confidence 45444332 333333333222222211111111 111222222 23467778887776421 0
Q ss_pred ccccCCCccccccccccCCCCCCCCcccchhhhhhhhcCcccCCChhhHHHHHHHHHHhhccccCCCCCCCCchhHHHHH
Q 005197 300 LYCDDGQGNNAFLGDFCPIQPADTKLFNFGIFLGALESGIVESTYFPKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFA 379 (709)
Q Consensus 300 ~~~~~~~~~~~Wl~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~ 379 (709)
. ..+.+..|..|+||+++|+||+||||+.|.+..+++++
T Consensus 368 -------~----------------------------------~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~ 406 (514)
T 2r9r_B 368 -------E----------------------------------RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVG 406 (514)
T ss_dssp -------C----------------------------------TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHH
T ss_pred -------C----------------------------------CCccccchhhhhheeeeEEEecccCCCCCCCcchHhhe
Confidence 0 11223468899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005197 380 VFISISGLVLFSFLIGNMQTYLQSTTTR 407 (709)
Q Consensus 380 i~~~i~G~~~fa~lig~~~~~l~~~~~~ 407 (709)
++++++|++++++.+|.+.+.++....+
T Consensus 407 ~~~~l~G~~~l~l~iavI~~~f~~~~~~ 434 (514)
T 2r9r_B 407 SLCAIAGVLTIALPVPVIVSNFNYFYHR 434 (514)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887776553
No 9
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.78 E-value=5.8e-18 Score=168.60 Aligned_cols=169 Identities=21% Similarity=0.244 Sum_probs=136.7
Q ss_pred hccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCeeehhh
Q 005197 475 LMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEEL 553 (709)
Q Consensus 475 L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~fGe~~ 553 (709)
|+++|+|.++++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+++|++||+.+
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~ 78 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT--LALLGPGELFGEMS 78 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEE--EEEECTTCEECHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEeehh
Confidence 46789999999999999999999999999999999999999999999999999874 5677766 78999999999988
Q ss_pred hhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHHHH
Q 005197 554 LTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKK 633 (709)
Q Consensus 554 l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~~~r 633 (709)
++ .+.++ +++++|.++|+++.+++++|.+++.++|++....++...+ ..+...++
T Consensus 79 ~~---~~~~~------~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~~~~~~~~ 133 (216)
T 4ev0_A 79 LL---DEGER------SASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLAR----------------RLREADLE 133 (216)
T ss_dssp HH---HCCBC------SSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH----------------HHHHHHHH
T ss_pred hc---CCCCc------ceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHH----------------HHHHHHHH
Confidence 74 33333 7799999999999999999999999999987766555443 22333445
Q ss_pred HHHHHHHHHHHHHHHhhh----hcCCCCCCccchHhHhHHH
Q 005197 634 KLEESLRAEENRLQDALA----KAGGSSPSLGATIYASRFA 670 (709)
Q Consensus 634 ~~~~~~~~~eery~~~~~----~~p~~~~~~~~~~iASr~~ 670 (709)
.......++++|+..++. +.+.+..+++++.+|+.+.
T Consensus 134 ~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg 174 (216)
T 4ev0_A 134 LDLLSFEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAG 174 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhC
Confidence 555566677778776663 3456677888999988773
No 10
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.76 E-value=1.6e-17 Score=165.84 Aligned_cols=170 Identities=12% Similarity=0.092 Sum_probs=134.2
Q ss_pred hHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEE-ecCCceeeeeeeecCCCCe--e
Q 005197 473 ALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDF--C 549 (709)
Q Consensus 473 ~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~-~~~g~~~~~~l~~l~~Gd~--f 549 (709)
++++++|+|.++++++++.+...++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +..+++|++ |
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~~~ 80 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREIT--LYRLFDMDMCLL 80 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEESG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEE--EEecCCCCeeeh
Confidence 578999999999999999999999999999999999999999999999999999987 45677766 789999999 6
Q ss_pred ehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHH
Q 005197 550 GEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRR 629 (709)
Q Consensus 550 Ge~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~ 629 (709)
|+.++ +.+.+. .++++|+++|+++.+++++|.+++.++|++....++...+.+. .
T Consensus 81 g~~~~---~~~~~~------~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~----------------~ 135 (220)
T 3dv8_A 81 SASCI---MRSIQF------EVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFS----------------D 135 (220)
T ss_dssp GGGGG---CTTCCC------CCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH----------------H
T ss_pred hHHHH---hCCCCC------ceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH----------------H
Confidence 88877 444443 7899999999999999999999999999988766555443222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCC----CCCCccchHhHhHH
Q 005197 630 YSKKKLEESLRAEENRLQDALAKAGG----SSPSLGATIYASRF 669 (709)
Q Consensus 630 ~~~r~~~~~~~~~eery~~~~~~~p~----~~~~~~~~~iASr~ 669 (709)
..++.......++++|+..++...++ ....+++..+|+.+
T Consensus 136 ~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~l 179 (220)
T 3dv8_A 136 VMWLIEQIMWKSLDKRVASFLLEETSIEGTNELKITHETIANHL 179 (220)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHh
Confidence 22333344455566666665555433 33467888888877
No 11
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.74 E-value=1.2e-17 Score=168.96 Aligned_cols=173 Identities=15% Similarity=0.159 Sum_probs=136.8
Q ss_pred HHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEE-ecCCceeeeeeeecCCCCe
Q 005197 470 LCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDF 548 (709)
Q Consensus 470 ~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~-~~~g~~~~~~l~~l~~Gd~ 548 (709)
...++|+++|+|.++++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++. ..+|++.+ +..+++|++
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~ 85 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAV--VSVFTRGES 85 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTEE
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEeCCCCE
Confidence 346789999999999999999999999999999999999999999999999999999988 45777766 789999999
Q ss_pred eehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHH
Q 005197 549 CGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWR 628 (709)
Q Consensus 549 fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~ 628 (709)
||+.+++ .+.++ .++++|+++|+++.|++++|..++.++|.+....++...+. .+
T Consensus 86 ~G~~~~~---~~~~~------~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~----------------l~ 140 (237)
T 3fx3_A 86 FGEAVAL---RNTPY------PVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGH----------------LH 140 (237)
T ss_dssp ECHHHHH---HTCCC------SSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH----------------HH
T ss_pred echHHHh---cCCCC------CceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH----------------HH
Confidence 9999985 33343 77999999999999999999999999999877666554432 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc-----CCCCCCcc--chHhHhHH
Q 005197 629 RYSKKKLEESLRAEENRLQDALAKA-----GGSSPSLG--ATIYASRF 669 (709)
Q Consensus 629 ~~~~r~~~~~~~~~eery~~~~~~~-----p~~~~~~~--~~~iASr~ 669 (709)
...++.......++++|+..++... ++...++| ++.||+.+
T Consensus 141 ~~~~~~~~l~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~l 188 (237)
T 3fx3_A 141 SLVAQLEQLKAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRL 188 (237)
T ss_dssp HHHHHHHHCCCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHh
Confidence 2233334444556778887777663 22233444 67777765
No 12
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.74 E-value=2.6e-17 Score=165.82 Aligned_cols=127 Identities=20% Similarity=0.288 Sum_probs=112.3
Q ss_pred HhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCeee
Q 005197 472 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 472 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~fG 550 (709)
.++|+++|+|.++++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 82 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERV--LGDIYAPGVVG 82 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEE--EEEEESSEEES
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEE--EEecCCCCEEe
Confidence 46789999999999999999999999999999999999999999999999999999874 5777766 78999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 005197 551 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFR 609 (709)
Q Consensus 551 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r 609 (709)
+.++ +.+.++ .++++|+++|+++.|++++|..++.++|.+....++...+
T Consensus 83 ~~~~---~~~~~~------~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 132 (231)
T 3e97_A 83 ETAV---LAHQER------SASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLAR 132 (231)
T ss_dssp TTTT---TCCCCC------CEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred eHHH---hCCCCc------eEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9987 344443 7899999999999999999999999999988777666554
No 13
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.73 E-value=2.1e-17 Score=165.84 Aligned_cols=184 Identities=15% Similarity=0.179 Sum_probs=143.1
Q ss_pred HhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEE-ecCCceeeeeeeecCCCCeee
Q 005197 472 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 472 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~-~~~g~~~~~~l~~l~~Gd~fG 550 (709)
.++++++|+|.+++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++. ..+|++.+ +..+++|++||
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 85 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 85 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBC--CCEECTTEEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEee
Confidence 4688999999999999999999999999999999999999999999999999999887 44677766 78999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHH
Q 005197 551 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRY 630 (709)
Q Consensus 551 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~ 630 (709)
+.++ +.+.+ .+.++++|.++|+++.+++++|..++.++|.+....++...+.. ...
T Consensus 86 ~~~~---~~~~~-----~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l----------------~~~ 141 (227)
T 3dkw_A 86 EAMM---FMDTP-----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRL----------------HQR 141 (227)
T ss_dssp CTTT---TTTCS-----BCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHH----------------HHH
T ss_pred eHHh---cCCCC-----CCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH----------------HHH
Confidence 9987 34444 13779999999999999999999999999998776655544322 222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-cCC-------CCCCccchHhHhHHH------HHHHHHhhhcc
Q 005197 631 SKKKLEESLRAEENRLQDALAK-AGG-------SSPSLGATIYASRFA------ANALRLIRRNS 681 (709)
Q Consensus 631 ~~r~~~~~~~~~eery~~~~~~-~p~-------~~~~~~~~~iASr~~------~~~~~~~~~~~ 681 (709)
.++.......++++|+..++.. .+. +...++++.+|+.+. ++.+..+++.+
T Consensus 142 ~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g 206 (227)
T 3dkw_A 142 IDEIETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEG 206 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 3344444556777787765532 332 567788899987763 34444454443
No 14
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.73 E-value=1.5e-17 Score=167.23 Aligned_cols=172 Identities=23% Similarity=0.319 Sum_probs=135.9
Q ss_pred HhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCeee
Q 005197 472 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 472 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~fG 550 (709)
.++++++|+|.++++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 82 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENL--LTIMGPSDMFG 82 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEE--EEEecCCCEEe
Confidence 45789999999999999999999999999999999999999999999999999999884 4677766 78999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHH
Q 005197 551 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRY 630 (709)
Q Consensus 551 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~ 630 (709)
+.+++ .+.++ .++++|+++|+++.|++++|.+++.++|.+....++...+.+. ..
T Consensus 83 ~~~~~---~~~~~------~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~----------------~~ 137 (227)
T 3d0s_A 83 ELSIF---DPGPR------TSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLR----------------RT 137 (227)
T ss_dssp CHHHH---SCSCC------SSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHH----------------HH
T ss_pred eHHHc---CCCCc------eeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHH----------------HH
Confidence 99874 44443 7899999999999999999999999999988766665443222 22
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-----------cCCCCCCccchHhHhHHH
Q 005197 631 SKKKLEESLRAEENRLQDALAK-----------AGGSSPSLGATIYASRFA 670 (709)
Q Consensus 631 ~~r~~~~~~~~~eery~~~~~~-----------~p~~~~~~~~~~iASr~~ 670 (709)
.++.......++++|+..++.. .+.+...+++..+|+.+.
T Consensus 138 ~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg 188 (227)
T 3d0s_A 138 NNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVG 188 (227)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhC
Confidence 3333334444556665544432 223556788888887653
No 15
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.72 E-value=6.1e-17 Score=158.15 Aligned_cols=152 Identities=20% Similarity=0.282 Sum_probs=126.8
Q ss_pred HHHHHhhCChhh----HHHHHHHHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEE
Q 005197 451 EENLLCNLPKDL----RRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLL 526 (709)
Q Consensus 451 e~~ll~~Lp~~L----r~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~ 526 (709)
+..+.+.+++++ +.+.......++++++|+|.+++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 344555555544 3444555667899999999999999999999999999999999999999999999999999999
Q ss_pred EEEe-cCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHH
Q 005197 527 TITT-NGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLR 605 (709)
Q Consensus 527 v~~~-~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~ 605 (709)
++.. .+|++.+ +..+++|++||+.+++ .+.++ +++++|.++|+++.|++++|.+++.++|++....++
T Consensus 93 v~~~~~~g~~~~--~~~~~~G~~fGe~~~l---~~~~~------~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~ 161 (187)
T 3gyd_A 93 VIKDIPNKGIQT--IAKVGAGAIIGEMSMI---DGMPR------SASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLI 161 (187)
T ss_dssp EEEEETTTEEEE--EEEEETTCEESHHHHH---HCCCC------SSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHH
T ss_pred EEEECCCCCeEE--EEEccCCCeeeeHHHh---CCCCe------eEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHH
Confidence 8884 5777766 7899999999999974 34443 779999999999999999999999999999887776
Q ss_pred HHHHHhhH
Q 005197 606 HTFRFYSQ 613 (709)
Q Consensus 606 ~~~r~~s~ 613 (709)
...+..+.
T Consensus 162 ~l~~~l~~ 169 (187)
T 3gyd_A 162 RLLQLLTA 169 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65544333
No 16
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.72 E-value=5.2e-17 Score=150.19 Aligned_cols=133 Identities=14% Similarity=0.187 Sum_probs=111.1
Q ss_pred HhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe-cCCceee-eeeeecCCCCee
Q 005197 472 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGF-FNSEYLGAGDFC 549 (709)
Q Consensus 472 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~-~~l~~l~~Gd~f 549 (709)
.++++++|+|++++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++.. .+|++.+ .++..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 35789999999999999999999999999999999999999999999999999999874 4454422 115789999999
Q ss_pred ehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhH
Q 005197 550 GEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQ 613 (709)
Q Consensus 550 Ge~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~ 613 (709)
|+.++ +.+.+ +.++++|.++|+++.|++++|.+++.++|.+....++...+..++
T Consensus 85 G~~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~ 139 (142)
T 3mdp_A 85 GVSSL---IKPYH------YTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLA 139 (142)
T ss_dssp CGGGS---STTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred chHHH---cCCCC------ceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 99887 34444 378999999999999999999999999999998877776665443
No 17
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.72 E-value=8.2e-17 Score=162.28 Aligned_cols=168 Identities=15% Similarity=0.212 Sum_probs=130.3
Q ss_pred ccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCeeehhhh
Q 005197 476 MRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELL 554 (709)
Q Consensus 476 ~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~fGe~~l 554 (709)
.++|+|.++++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+++|++||+.++
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G~~~~ 90 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHI--SRIVKPGQFFGMRPY 90 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCE--EEEECTTCEESHHHH
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEeCCCCEeeeehh
Confidence 3679999999999999999999999999999999999999999999999999874 4577766 789999999999987
Q ss_pred hhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHHHHH
Q 005197 555 TWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKK 634 (709)
Q Consensus 555 ~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~~~r~ 634 (709)
+ .+.++ .++++|+++|+++.|++++|.+++.++|++....++...+.+. ...++.
T Consensus 91 ~---~~~~~------~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~----------------~~~~~~ 145 (232)
T 2gau_A 91 F---AEETC------SSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELG----------------YAERRT 145 (232)
T ss_dssp H---HTSCC------SSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH----------------HHHHHH
T ss_pred h---CCCCc------ceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH----------------HHHHHH
Confidence 4 33333 7799999999999999999999999999988766665544222 223333
Q ss_pred HHHHHHHHHHHHHHhhh----h------cCCCCCCccchHhHhHHH
Q 005197 635 LEESLRAEENRLQDALA----K------AGGSSPSLGATIYASRFA 670 (709)
Q Consensus 635 ~~~~~~~~eery~~~~~----~------~p~~~~~~~~~~iASr~~ 670 (709)
......++++|+..++. + .+.+...++++.+|+.+.
T Consensus 146 ~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg 191 (232)
T 2gau_A 146 VTLTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSN 191 (232)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhC
Confidence 33444556666655552 1 245667788888887553
No 18
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.72 E-value=1.7e-16 Score=159.63 Aligned_cols=173 Identities=14% Similarity=0.205 Sum_probs=125.8
Q ss_pred HhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEE-ecCCceeeeeeeecCCCCeee
Q 005197 472 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 472 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~-~~~g~~~~~~l~~l~~Gd~fG 550 (709)
...+++.++|.++++++++.+...++.+.|++|++|+++||+++.+|+|.+|.|+++. ..+|++.+ +..+++|++||
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G 87 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELV--LGYFGSGEFVG 87 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEE--EEEECTTCEES
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEE
Confidence 4678899999999999999999999999999999999999999999999999999987 45677766 78999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHh-----HHHHHHHHHHHHHHhhHhHHhHHHHHHHH
Q 005197 551 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQF-----RRLHSKQLRHTFRFYSQQWRSWAACFIQA 625 (709)
Q Consensus 551 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~-----p~l~~~~l~~~~r~~s~~~~~~~~~~iq~ 625 (709)
+.+++ ....+ ++++++|.++|+++.+++++|.+++.++ |++....++...+
T Consensus 88 ~~~~~--~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~---------------- 143 (230)
T 3iwz_A 88 EMGLF--IESDT------REVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSK---------------- 143 (230)
T ss_dssp CGGGT--SCCSB------CCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHH----------------
T ss_pred ehhhh--cCCCC------ceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHH----------------
Confidence 99984 22223 3779999999999999999999999999 9887665555433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCC----------CCCCccchHhHhHHH
Q 005197 626 AWRRYSKKKLEESLRAEENRLQDALAKAGG----------SSPSLGATIYASRFA 670 (709)
Q Consensus 626 ~~~~~~~r~~~~~~~~~eery~~~~~~~p~----------~~~~~~~~~iASr~~ 670 (709)
..+...++.......++++|+..++..... ....++++.+|+.+.
T Consensus 144 ~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg 198 (230)
T 3iwz_A 144 RLLDTTRKASRLAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVG 198 (230)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhC
Confidence 222334445555566778887766654322 223466677776553
No 19
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.71 E-value=3.2e-17 Score=151.59 Aligned_cols=130 Identities=19% Similarity=0.283 Sum_probs=113.4
Q ss_pred hCChhhHHHHHHHHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCcee
Q 005197 457 NLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTG 536 (709)
Q Consensus 457 ~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~ 536 (709)
++|..+|.+...+...++++++++|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~g~-- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--EGV-- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE--TTE--
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE--CCE--
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999965 343
Q ss_pred eeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHH
Q 005197 537 FFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHS 601 (709)
Q Consensus 537 ~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~ 601 (709)
. +..+++|++||+.+++ .+.++ +++++|.++|+++.|++++|.++++++|.+..
T Consensus 83 ~--~~~~~~G~~fGe~~~l---~~~~~------~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r 136 (139)
T 3ocp_A 83 K--LCTMGPGKVFGELAIL---YNCTR------TATVKTLVNVKLWAIDRQCFQTIMMRTGLIKH 136 (139)
T ss_dssp E--EEEECTTCEESCHHHH---HCCCC------SSEEEESSCEEEEEEEHHHHHHHHTC------
T ss_pred E--EEEeCCCCEeccHHHH---CCCCc------ceEEEECcceEEEEEcHHHHHHHHhhChHhhh
Confidence 2 7899999999999974 33443 77999999999999999999999999997754
No 20
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.71 E-value=1.3e-17 Score=153.60 Aligned_cols=129 Identities=72% Similarity=1.203 Sum_probs=109.6
Q ss_pred hHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehh
Q 005197 473 ALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEE 552 (709)
Q Consensus 473 ~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~ 552 (709)
++++++++|..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|++....+|++.++.+..+.+|++||+.
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~ 85 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE 85 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence 46889999999999999999999999999999999999999999999999999976566777766223399999999999
Q ss_pred hhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHH
Q 005197 553 LLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHS 601 (709)
Q Consensus 553 ~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~ 601 (709)
++++.+.+.++.+.+.++++++|+++|+++.|++++|.++++++|++++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 8622255554333334578999999999999999999999999997654
No 21
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.70 E-value=4.4e-17 Score=164.63 Aligned_cols=175 Identities=12% Similarity=0.145 Sum_probs=139.9
Q ss_pred HHHhHhccchhhccCcHHHHHHHHhh--cceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEE-ecCCceeeeeeeecCCC
Q 005197 470 LCLALLMRVPLFEKMDEQLLDALCDR--LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAG 546 (709)
Q Consensus 470 ~~~~~L~~v~lF~~ls~~~l~~L~~~--l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~-~~~g~~~~~~l~~l~~G 546 (709)
.....++++|+|.++++++++.++.. ++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +..+++|
T Consensus 15 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--l~~~~~G 92 (232)
T 1zyb_A 15 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTV--IEQIEAP 92 (232)
T ss_dssp HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEE--EEEEESS
T ss_pred HHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEE--EEEccCC
Confidence 34678999999999999999999998 9999999999999999999999999999999987 45677766 7899999
Q ss_pred CeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHH
Q 005197 547 DFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAA 626 (709)
Q Consensus 547 d~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~ 626 (709)
++||+.+++ .+.+ .+.++++|+++|+++.|++++|.+++.++|++....++...+ .
T Consensus 93 ~~fG~~~~~---~~~~-----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~----------------~ 148 (232)
T 1zyb_A 93 YLIEPQSLF---GMNT-----NYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSN----------------R 148 (232)
T ss_dssp EEECGGGGS---SSCC-----BCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHH----------------H
T ss_pred CeeeehHHh---CCCC-----CCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHH----------------H
Confidence 999999874 4433 137799999999999999999999999999887766555433 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc---C--CCCCCccchHhHhHHH
Q 005197 627 WRRYSKKKLEESLRAEENRLQDALAKA---G--GSSPSLGATIYASRFA 670 (709)
Q Consensus 627 ~~~~~~r~~~~~~~~~eery~~~~~~~---p--~~~~~~~~~~iASr~~ 670 (709)
.....++.......++++|+..++... + .+..++++..+|+.+.
T Consensus 149 l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG 197 (232)
T 1zyb_A 149 AQNLYSRLWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLD 197 (232)
T ss_dssp HHHHHHHTTSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhC
Confidence 222344444445567888888777653 2 2445677888887654
No 22
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.70 E-value=6e-17 Score=153.81 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=114.2
Q ss_pred HHHHHHHHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeee
Q 005197 463 RRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEY 542 (709)
Q Consensus 463 r~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~ 542 (709)
+.+.......++|+++++|.+++++.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++...+|++.+ +..
T Consensus 28 ~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~--~~~ 105 (161)
T 3idb_B 28 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGN 105 (161)
T ss_dssp CCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEEEE--EEE
T ss_pred CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCeEE--EEE
Confidence 344445566789999999999999999999999999999999999999999999999999999999877788776 789
Q ss_pred cCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHH
Q 005197 543 LGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHS 601 (709)
Q Consensus 543 l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~ 601 (709)
+++|++||+.+++ .+.++ +++++|.++|+++.|++++|.++++++|.+..
T Consensus 106 ~~~G~~fGe~~~~---~~~~~------~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 106 YDNRGSFGELALM---YNTPR------AATITATSPGALWGLDRVTFRRIIVKNNAKKR 155 (161)
T ss_dssp EESCCEECGGGGT---CCCCC------SSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred cCCCCEechHHHH---cCCCc------ccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence 9999999999884 44443 78999999999999999999999999997654
No 23
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.70 E-value=7.9e-17 Score=161.12 Aligned_cols=164 Identities=10% Similarity=0.123 Sum_probs=132.8
Q ss_pred hHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehh
Q 005197 473 ALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEE 552 (709)
Q Consensus 473 ~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~ 552 (709)
.+++++|+|.++++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++...+|++.+ +..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~~G~- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFT--LAILEAGDIFCT- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEE--EEEEETTCEEES-
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEeCC-
Confidence 46889999999999999999999999999999999999999999999999999997667788877 789999999998
Q ss_pred hhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHHH
Q 005197 553 LLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSK 632 (709)
Q Consensus 553 ~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~~~ 632 (709)
+ +.++++|+++|+++.|++++|.+++.++|++....++...+.+ ....+
T Consensus 81 ---------~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~----------------~~~~~ 129 (220)
T 2fmy_A 81 ---------H------TRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLL----------------KNSLT 129 (220)
T ss_dssp ---------C------SSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHH----------------HHHHH
T ss_pred ---------c------cceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH----------------HHHHH
Confidence 1 2679999999999999999999999999998876666544322 22334
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCC-----------CCCCccchHhHhHHH
Q 005197 633 KKLEESLRAEENRLQDALAKAGG-----------SSPSLGATIYASRFA 670 (709)
Q Consensus 633 r~~~~~~~~~eery~~~~~~~p~-----------~~~~~~~~~iASr~~ 670 (709)
+.......++++|+..++...++ +...+++..+|+.+.
T Consensus 130 ~~~~l~~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg 178 (220)
T 2fmy_A 130 IINGLVFKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLG 178 (220)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhC
Confidence 44445556667777665554332 456788888887664
No 24
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.69 E-value=2.4e-16 Score=146.81 Aligned_cols=124 Identities=30% Similarity=0.386 Sum_probs=109.9
Q ss_pred HhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCeee
Q 005197 472 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 472 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~fG 550 (709)
.++++++++|.++++++++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G 81 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENM--LAVVGPSELIG 81 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEE--EEEECTTCEES
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEE--EEEcCCcCEec
Confidence 46789999999999999999999999999999999999999999999999999999874 4577766 78999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHH
Q 005197 551 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRH 606 (709)
Q Consensus 551 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~ 606 (709)
+.+++ .+.+ +.++++|.++|+++.|++++|.+++.++|.+....++.
T Consensus 82 ~~~~~---~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~ 128 (149)
T 2pqq_A 82 ELSLF---DPGP------RTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRA 128 (149)
T ss_dssp GGGGT---SCEE------CSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHH
T ss_pred hHHhc---CCCC------cceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHH
Confidence 99873 4333 37799999999999999999999999999877655444
No 25
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.68 E-value=3.4e-16 Score=146.78 Aligned_cols=128 Identities=16% Similarity=0.191 Sum_probs=109.4
Q ss_pred HhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCeee
Q 005197 472 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 472 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~fG 550 (709)
.++++++++|..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~G 88 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKI--LEVTNERNTFA 88 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----C--CEEECTTEEES
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEE--EEEccCCCeec
Confidence 56899999999999999999999999999999999999999999999999999999874 4577666 78999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 005197 551 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFR 609 (709)
Q Consensus 551 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r 609 (709)
+.+++ .+.+ .+.++++|.++|+++.|++++|..++.++|++....++...+
T Consensus 89 ~~~~~---~~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~ 139 (154)
T 2z69_A 89 EAMMF---MDTP-----NYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 139 (154)
T ss_dssp GGGGG---SSCS-----BCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHhhc---cCCC-----CCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHH
Confidence 99874 4333 137799999999999999999999999999988766665543
No 26
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.68 E-value=2e-16 Score=158.44 Aligned_cols=174 Identities=11% Similarity=0.062 Sum_probs=138.6
Q ss_pred HhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhh
Q 005197 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEEL 553 (709)
Q Consensus 474 ~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~ 553 (709)
+|+++|+|.++++++++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++...+|++.+ +..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~--~~~~~~G~~fG--- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREIS--LFYLTSGDMFC--- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEE--EEEEETTCEEE---
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEE--EEEcCCCCEec---
Confidence 4678999999999999999999999999999999999999999999999999997666788876 78999999999
Q ss_pred hhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHHHH
Q 005197 554 LTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKK 633 (709)
Q Consensus 554 l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~~~r 633 (709)
.+ +.++++|+++|+++.|++++|.+++.++|.+....++...+ ..+...++
T Consensus 76 -------~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----------------~l~~~~~~ 126 (222)
T 1ft9_A 76 -------MH------SGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGR----------------ALTSCMRT 126 (222)
T ss_dssp -------SC------SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHH----------------HHHHHHHH
T ss_pred -------CC------CCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHH----------------HHHHHHHH
Confidence 11 36799999999999999999999999999887766555433 22334455
Q ss_pred HHHHHHHHHHHHHHHhhhhcCC-----------CCCCccchHhHhHHH------HHHHHHhhhcc
Q 005197 634 KLEESLRAEENRLQDALAKAGG-----------SSPSLGATIYASRFA------ANALRLIRRNS 681 (709)
Q Consensus 634 ~~~~~~~~~eery~~~~~~~p~-----------~~~~~~~~~iASr~~------~~~~~~~~~~~ 681 (709)
.......++++|+..++...+. +...+++..+|+.+. +++++.+++.+
T Consensus 127 ~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g 191 (222)
T 1ft9_A 127 IEDLMFHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKEG 191 (222)
T ss_dssp HHHHHTHHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCC
Confidence 5566667888999888876552 345577888886553 34444555444
No 27
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.67 E-value=9.7e-16 Score=151.71 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=123.8
Q ss_pred hhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCeeehhhhhhh
Q 005197 479 PLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELLTWA 557 (709)
Q Consensus 479 ~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~fGe~~l~~~ 557 (709)
++++.+++++++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++.. .+|++.+ +..+++|++||+.+++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~g~~~G~~~~~-- 77 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF-- 77 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEE--EEEEETTCEESCTTTT--
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEeeeHHHh--
Confidence 4567799999999999999999999999999999999999999999999874 6677766 7899999999999874
Q ss_pred cCCC-CCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHHHHHHH
Q 005197 558 LDPQ-SSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLE 636 (709)
Q Consensus 558 l~~~-~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~~~r~~~ 636 (709)
.+. + +.++++|+++|+++.+++++|..++.++|++....++...+. .+...++...
T Consensus 78 -~~~~~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~----------------l~~~~~~~~~ 134 (210)
T 3ryp_A 78 -EEGQE------RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARR----------------LQVTSEKVGN 134 (210)
T ss_dssp -STTCB------CSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH----------------HHHHHHHHHH
T ss_pred -cCCCC------ceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHHH----------------HHHHHHHHHH
Confidence 333 3 377999999999999999999999999999877665554432 2223333444
Q ss_pred HHHHHHHHHHHHhhhhcCC----------CCCCccchHhHhHHH
Q 005197 637 ESLRAEENRLQDALAKAGG----------SSPSLGATIYASRFA 670 (709)
Q Consensus 637 ~~~~~~eery~~~~~~~p~----------~~~~~~~~~iASr~~ 670 (709)
....++++|+..++..... +...+++..+|+.+.
T Consensus 135 ~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg 178 (210)
T 3ryp_A 135 LAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVG 178 (210)
T ss_dssp HHHSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHT
T ss_pred HhhCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhC
Confidence 4455677777655543221 223566777776543
No 28
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.67 E-value=9.1e-16 Score=151.55 Aligned_cols=160 Identities=21% Similarity=0.254 Sum_probs=123.1
Q ss_pred CcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCeeehhhhhhhcCCC-
Q 005197 484 MDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELLTWALDPQ- 561 (709)
Q Consensus 484 ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~- 561 (709)
|++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++.+ +..+++|++||+.+++ .+.
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~~~~~---~~~~ 75 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMI--IGYLNSGDFFGELGLF---EKEG 75 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEESCTTTC---C---
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCCcccHHHh---cCCC
Confidence 57899999999999999999999999999999999999999999874 5677766 7899999999999874 333
Q ss_pred ---CCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHHHHHHHHH
Q 005197 562 ---SSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEES 638 (709)
Q Consensus 562 ---~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~~~r~~~~~ 638 (709)
+ +.++++|+++|+++.|++++|.+++.++|.+....++...+.+ ....++.....
T Consensus 76 ~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~----------------~~~~~~~~~l~ 133 (207)
T 2oz6_A 76 SEQE------RSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRL----------------RKTTRKVGDLA 133 (207)
T ss_dssp --CB------CCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH----------------HHHHHHHHHHH
T ss_pred CCCC------cceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHH----------------HHHHHHHHHHh
Confidence 3 3779999999999999999999999999998876666544322 12233444445
Q ss_pred HHHHHHHHHHhhhh---cCC-------CCCCccchHhHhHHH
Q 005197 639 LRAEENRLQDALAK---AGG-------SSPSLGATIYASRFA 670 (709)
Q Consensus 639 ~~~~eery~~~~~~---~p~-------~~~~~~~~~iASr~~ 670 (709)
..++++|+..++.. .++ +...+++..+|+.+.
T Consensus 134 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg 175 (207)
T 2oz6_A 134 FLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVG 175 (207)
T ss_dssp HCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhC
Confidence 55677777655532 221 334577777776543
No 29
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.67 E-value=2.2e-16 Score=157.29 Aligned_cols=167 Identities=13% Similarity=0.141 Sum_probs=105.5
Q ss_pred chhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEE-ecCCceeeeeeeecCCCCeeehhhhhh
Q 005197 478 VPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCGEELLTW 556 (709)
Q Consensus 478 v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~-~~~g~~~~~~l~~l~~Gd~fGe~~l~~ 556 (709)
-|+|+..++...+.+...++.+.|++|++|+++|++++.+|||.+|.|+++. ..+|++.+ +..+++|++||+.+++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~~~~~- 80 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLE--IDEIKPVQIIASGFIF- 80 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEE--EEEECSSEESSGGGTT-
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEeeeHHHh-
Confidence 4788889999999999999999999999999999999999999999999987 45677766 7899999999999874
Q ss_pred hcCCC-CCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHHHHHH
Q 005197 557 ALDPQ-SSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKL 635 (709)
Q Consensus 557 ~l~~~-~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~~~r~~ 635 (709)
.+. + +.++++|+++|+++.|++++|.+++.++|++....++...+.. ....++..
T Consensus 81 --~~~~~------~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~~----------------~~~~~~~~ 136 (213)
T 1o5l_A 81 --SSEPR------FPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEHF----------------RVVSEKLF 136 (213)
T ss_dssp --SSSCB------CSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH----------------HHHHHHHH
T ss_pred --cCCCC------ceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH----------------HHHHHHHH
Confidence 322 3 3779999999999999999999999999998776666544311 22344455
Q ss_pred HHHHHHHHHHHHHhhhhcC----CCCCCccchHhHhHHHH
Q 005197 636 EESLRAEENRLQDALAKAG----GSSPSLGATIYASRFAA 671 (709)
Q Consensus 636 ~~~~~~~eery~~~~~~~p----~~~~~~~~~~iASr~~~ 671 (709)
.....++++|+..++.+.+ .+...+++..+|+.+..
T Consensus 137 ~l~~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~ 176 (213)
T 1o5l_A 137 FLTTKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGC 176 (213)
T ss_dssp HHHCC-----------------------------------
T ss_pred HHhhCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCC
Confidence 5566778888888887766 45556777777766544
No 30
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.64 E-value=1.6e-15 Score=139.53 Aligned_cols=122 Identities=27% Similarity=0.422 Sum_probs=107.6
Q ss_pred HHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 471 CLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 471 ~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
..++++++++|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ + ..+++|++||
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~-----~~~~~G~~~G 80 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---P-----VELGPGAFFG 80 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---C-----EEECTTCEEC
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---c-----ceECCCCEee
Confidence 3578999999999999999999999999999999999999999999999999999998654 1 3789999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHH
Q 005197 551 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFR 609 (709)
Q Consensus 551 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r 609 (709)
+.+++ .+.++ .++++|.++|+++.|++++|.+++.++|++....++...+
T Consensus 81 ~~~~~---~~~~~------~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 130 (138)
T 1vp6_A 81 EMALI---SGEPR------SATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 130 (138)
T ss_dssp HHHHH---HCCCC------SSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ehHhc---cCCCc------eeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99874 33343 6799999999999999999999999999988766665544
No 31
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.63 E-value=3.6e-15 Score=153.40 Aligned_cols=161 Identities=16% Similarity=0.198 Sum_probs=121.3
Q ss_pred ccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCeeehhhhhhhcCC
Q 005197 482 EKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELLTWALDP 560 (709)
Q Consensus 482 ~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~ 560 (709)
..++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++.. .+|++.+ +..+++|++||+.+++ .+
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~~~G~~~Ge~~~~---~~ 129 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMI--LSYLNQGDFIGELGLF---EE 129 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEE--EEEEETTCEESCTTTT---ST
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEE--EEEcCCCCEEeehHHh---CC
Confidence 5589999999999999999999999999999999999999999999874 5677766 7899999999999874 33
Q ss_pred C-CCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005197 561 Q-SSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEESL 639 (709)
Q Consensus 561 ~-~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~~~r~~~~~~ 639 (709)
. + ++++++|+++|+++.|++++|.+++.++|++....++...+. .+...++......
T Consensus 130 ~~~------~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~~----------------l~~~~~~~~~l~~ 187 (260)
T 3kcc_A 130 GQE------RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARR----------------LQVTSEKVGNLAF 187 (260)
T ss_dssp TCB------CCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH----------------HHHHHHHHHHHHH
T ss_pred CCC------CceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH----------------HHHHHHHHHHHhc
Confidence 3 3 377999999999999999999999999998877665554432 2223334444445
Q ss_pred HHHHHHHHHhhhh---cCC-------CCCCccchHhHhHH
Q 005197 640 RAEENRLQDALAK---AGG-------SSPSLGATIYASRF 669 (709)
Q Consensus 640 ~~~eery~~~~~~---~p~-------~~~~~~~~~iASr~ 669 (709)
.++++|+..++.. .++ +..++++..||+.+
T Consensus 188 ~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~l 227 (260)
T 3kcc_A 188 LLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIV 227 (260)
T ss_dssp CCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHh
Confidence 5667776655432 221 22356777777754
No 32
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.62 E-value=2.7e-15 Score=141.30 Aligned_cols=118 Identities=19% Similarity=0.256 Sum_probs=104.6
Q ss_pred HHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCe
Q 005197 469 HLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDF 548 (709)
Q Consensus 469 ~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~ 548 (709)
....++++++++|.+++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++. +|+. +..+++|++
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~~~~----~~~~~~G~~ 107 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNEW----ATSVGEGGS 107 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE--TTEE----EEEECTTCE
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE--CCEE----EEEecCCCE
Confidence 4456789999999999999999999999999999999999999999999999999999987 3432 678999999
Q ss_pred eehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHH
Q 005197 549 CGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHS 601 (709)
Q Consensus 549 fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~ 601 (709)
||+.+++ .+.++ .++++|+++|+++.|++++|.+++.++|.+..
T Consensus 108 fGe~~~~---~~~~~------~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~ 151 (154)
T 3pna_A 108 FGELALI---YGTPR------AATVKAKTNVKLWGIDRDSYRRILMGSTLRKR 151 (154)
T ss_dssp ECCHHHH---HCCCC------SSEEEESSCEEEEEEEHHHHHHHTHHHHHHC-
T ss_pred eeehHhh---cCCCc------ceEEEECcceEEEEEeHHHHHHHHHhChHHHh
Confidence 9999885 33443 77999999999999999999999999986644
No 33
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.59 E-value=9.4e-15 Score=153.18 Aligned_cols=134 Identities=18% Similarity=0.265 Sum_probs=118.8
Q ss_pred HHHhhCChhhHHHHHHHHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecC
Q 005197 453 NLLCNLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNG 532 (709)
Q Consensus 453 ~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~ 532 (709)
....++|...|.+...++..++++++++|.++++++++.++..++.+.|++|++|+++||+++.+|||++|.|+++. +
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--~ 96 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--E 96 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE--T
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE--C
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999965 3
Q ss_pred CceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHH
Q 005197 533 GRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHS 601 (709)
Q Consensus 533 g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~ 601 (709)
|. . +..+.+|++|||.+++ .+.+ ++++++|.++|+++.|++++|..++.++|....
T Consensus 97 g~--~--~~~~~~G~~fGe~~ll---~~~~------~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~ 152 (299)
T 3shr_A 97 GV--K--LCTMGPGKVFGELAIL---YNCT------RTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKH 152 (299)
T ss_dssp TE--E--EEEECTTCEESCSGGG---TTTB------CCSEEEESSCEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CE--E--EEEeCCCCeeeHhHHh---cCCC------CCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHH
Confidence 33 2 7899999999999874 4444 388999999999999999999999999986544
No 34
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.59 E-value=4.8e-15 Score=151.26 Aligned_cols=168 Identities=12% Similarity=0.114 Sum_probs=129.1
Q ss_pred hHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEE-ecCCceeeeeeeecCCCCeeeh
Q 005197 473 ALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCGE 551 (709)
Q Consensus 473 ~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~-~~~g~~~~~~l~~l~~Gd~fGe 551 (709)
.++.+...+..+++++++.+...++.+.|++|++|+++|++++.+|||.+|.|+++. ..+|++.+ +..+++|++||+
T Consensus 9 ~~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~--~~~~~~G~~~G~ 86 (250)
T 3e6c_C 9 DFCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKL--LYYAGGNSLIGK 86 (250)
T ss_dssp CCCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECC
T ss_pred hhhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEE--EEEecCCCEEee
Confidence 345555556899999999999999999999999999999999999999999999987 46778776 789999999999
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHH
Q 005197 552 ELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYS 631 (709)
Q Consensus 552 ~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~~ 631 (709)
+ +.+. . .++++|+++|+++.+++++|..++.++|++....++...+.+. ...
T Consensus 87 --~---l~~~-~------~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~----------------~~~ 138 (250)
T 3e6c_C 87 --L---YPTG-N------NIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVA----------------YYA 138 (250)
T ss_dssp --C---SCCS-C------CEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHH----------------HHH
T ss_pred --e---cCCC-C------ceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHH----------------HHH
Confidence 4 3333 3 7899999999999999999999999999988766665544222 122
Q ss_pred HHHHHHHHHHHHHHHHHhhhh----cC-------CCCCCccchHhHhHHH
Q 005197 632 KKKLEESLRAEENRLQDALAK----AG-------GSSPSLGATIYASRFA 670 (709)
Q Consensus 632 ~r~~~~~~~~~eery~~~~~~----~p-------~~~~~~~~~~iASr~~ 670 (709)
++.......++++|+..++.. ++ .+...++++.+|+.+.
T Consensus 139 ~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG 188 (250)
T 3e6c_C 139 RQVAEMNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITG 188 (250)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhC
Confidence 333333444566666544422 22 2356788888887663
No 35
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.59 E-value=4.4e-15 Score=139.38 Aligned_cols=64 Identities=14% Similarity=0.460 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 005197 346 PKKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLE 409 (709)
Q Consensus 346 ~~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~ 409 (709)
...|..|+||+++|+|||||||++|.+..+++++++.+++|++++|+++|.+.+.+.+...+.+
T Consensus 82 ~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~ 145 (155)
T 2a9h_A 82 LISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERR 145 (155)
T ss_dssp TTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC---
T ss_pred cCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468999999999999999999999999999999999999999999999999999987765443
No 36
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.57 E-value=1.9e-14 Score=153.26 Aligned_cols=128 Identities=16% Similarity=0.219 Sum_probs=112.1
Q ss_pred HhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCeee
Q 005197 472 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 472 ~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~fG 550 (709)
.++|+++|+|++++++++..++..++.+.|++|++|+++||+++.+|||.+|.|+++.. .+|++ + +..+.+|++||
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~--~~~~~~G~~fG 88 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-I--IARALPGMIVG 88 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-E--EEEECTTCEES
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-E--EEEecCCCEee
Confidence 46889999999999999999999999999999999999999999999999999999875 44554 4 78999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 005197 551 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYS 612 (709)
Q Consensus 551 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s 612 (709)
+.+++ .+.+ ++++++|+++|+++.|++++|.+++ ++|.+..+.++...+...
T Consensus 89 e~~l~---~~~~------~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~~ 140 (333)
T 4ava_A 89 EIALL---RDSP------RSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRLA 140 (333)
T ss_dssp HHHHH---HTCB------CSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHHH
T ss_pred HHHhc---CCCC------ceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHHH
Confidence 99884 3344 3789999999999999999999999 999988877766555433
No 37
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.55 E-value=2.2e-15 Score=138.27 Aligned_cols=124 Identities=18% Similarity=0.254 Sum_probs=104.6
Q ss_pred ChhhHHHHHHHHHHhHhccchhhccCcHHHHHHHHhhcceeeeC-CCCEEEccCCCCCeEEEEEeeeEEEEEecCCceee
Q 005197 459 PKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYT-EESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGF 537 (709)
Q Consensus 459 p~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~-~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~ 537 (709)
||..|.+-......++++++++|..++++.++.++..++.+.|+ +|++|+++|++++.+|||.+|.|+++. .+|++
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-~~g~~-- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH-PDGKV-- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC-SSSCE--
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc-CCCcE--
Confidence 44555555555667789999999999999999999999999999 999999999999999999999999986 44543
Q ss_pred eeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEE-EEeccceeeeeCHHHHHHHHHHhH
Q 005197 538 FNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTV-RALTEVEAFALMADDLKFVASQFR 597 (709)
Q Consensus 538 ~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv-~A~~~~~vl~L~~~~f~~l~~~~p 597 (709)
..+.+|++||+.++ +.+.++ .+++ +|.++|+++.|++++|.+++++++
T Consensus 79 ---~~l~~G~~fG~~~~---~~~~~~------~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 ---ENLFMGNSFGITPT---LDKQYM------HGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp ---EEECTTCEESCCSS---SCCEEC------CSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred ---EEecCCCccChhHh---cCCCcc------eeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 45889999999887 344433 5678 999999999999999999987654
No 38
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.54 E-value=5.6e-14 Score=142.84 Aligned_cols=160 Identities=16% Similarity=0.091 Sum_probs=118.9
Q ss_pred HHHHHHHHhhcc---eeeeCCCCEEEccCCCCCeEEEEEeeeEEEEE-ecCCceeeeeeeecCCCCeeehhhhhhhcCCC
Q 005197 486 EQLLDALCDRLK---PVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCGEELLTWALDPQ 561 (709)
Q Consensus 486 ~~~l~~L~~~l~---~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~-~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~ 561 (709)
+++++.+..... .+.|++|++|+++|++++.+|||.+|.|+++. ..+|++.+ +..+++|++||+.+++ .+.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~--l~~~~~g~~~G~~~~~---~~~ 104 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEIT--VALLRENSVFGVLSLL---TGN 104 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEE--EEEECTTCEESCHHHH---SSC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEEcchHHh---CCC
Confidence 678888888888 99999999999999999999999999999987 45677766 7899999999999874 333
Q ss_pred CCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005197 562 SSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEESLRA 641 (709)
Q Consensus 562 ~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~~~r~~~~~~~~ 641 (709)
+. .+.++++|+++|+++.|++++|.+++.++|++....++...+.+.. ..++.......+
T Consensus 105 ~~----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~----------------~~~~~~~l~~~~ 164 (243)
T 3la7_A 105 KS----DRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQ----------------TEMMIETLAHRD 164 (243)
T ss_dssp CS----BCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------HHHHHHHHHCSS
T ss_pred CC----cceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHH----------------HHHHHHHHhcCC
Confidence 21 1257999999999999999999999999999887666654432221 122222223334
Q ss_pred HHHHHHHhhhh-----------cCCCCCCccchHhHhHHH
Q 005197 642 EENRLQDALAK-----------AGGSSPSLGATIYASRFA 670 (709)
Q Consensus 642 ~eery~~~~~~-----------~p~~~~~~~~~~iASr~~ 670 (709)
+++|+..++.. .+.+...++++.||+.+.
T Consensus 165 ~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG 204 (243)
T 3la7_A 165 MGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIG 204 (243)
T ss_dssp HHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHC
Confidence 45555433332 123456788888887654
No 39
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.54 E-value=2.1e-14 Score=150.59 Aligned_cols=129 Identities=26% Similarity=0.421 Sum_probs=113.7
Q ss_pred HHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEec--CCceeeeeeeecCCC
Q 005197 469 HLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTN--GGRTGFFNSEYLGAG 546 (709)
Q Consensus 469 ~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~--~g~~~~~~l~~l~~G 546 (709)
.....+++++++|..++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+ +|++.. +..+++|
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~--~~~l~~G 230 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVF--LRTLGKG 230 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEE--EEEEETT
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceE--EEEcCCC
Confidence 345678999999999999999999999999999999999999999999999999999999854 666655 7899999
Q ss_pred CeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHH
Q 005197 547 DFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTF 608 (709)
Q Consensus 547 d~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~ 608 (709)
++|||.++ +.+.+ ++++++|.++|+++.|++++|.+++.++|++..+.++...
T Consensus 231 ~~fGe~~l---l~~~~------~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~ 283 (299)
T 3shr_A 231 DWFGEKAL---QGEDV------RTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAE 283 (299)
T ss_dssp CEECGGGG---SSSEE------CSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred CEeChHHH---hCCCC------cceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHh
Confidence 99999987 44444 3789999999999999999999999999987766555543
No 40
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.52 E-value=1.9e-13 Score=138.40 Aligned_cols=174 Identities=13% Similarity=0.152 Sum_probs=123.5
Q ss_pred ccCcHHHHHHHHh--hcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEE-ecCCceeeeeeeecCCCCeeehhhhhhhc
Q 005197 482 EKMDEQLLDALCD--RLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCGEELLTWAL 558 (709)
Q Consensus 482 ~~ls~~~l~~L~~--~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~-~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l 558 (709)
++++++++..+.. .++.+.|++|++|+++||+++.+|||.+|.|+++. ..+|++.+ +..+ +|++||+.+++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~--~~~~-~G~~~Ge~~~~--- 75 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMN--LQYY-KGAFVIMSGFI--- 75 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEE--EEEE-ESSEEEESBCT---
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEE--EEEc-CCCEecchhhh---
Confidence 3688999999885 59999999999999999999999999999999987 45678776 6788 99999999874
Q ss_pred CCCCCCCCCCcceEEEEe-ccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHHHHHHHH
Q 005197 559 DPQSSSNLPISTRTVRAL-TEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEE 637 (709)
Q Consensus 559 ~~~~~~~~~~~~~tv~A~-~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~~~r~~~~ 637 (709)
.+.+. .+.++++|+ ++|+++.|++++|..++.++|.+....++...+.+.. ..++....
T Consensus 76 ~~~~~----~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~----------------~~~~~~~~ 135 (238)
T 2bgc_A 76 DTETS----VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVSY----------------SLAKFNDF 135 (238)
T ss_dssp TTCCB----SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHH----------------HHHHHHHH
T ss_pred cCCCc----CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHH----------------HHHHHHHH
Confidence 33210 013477777 5999999999999999999999887766655442221 22333334
Q ss_pred HHHHHHHHHHHhhhh--------cC---CCCC-CccchHhHhHH-------HHHHHHHhhhcc
Q 005197 638 SLRAEENRLQDALAK--------AG---GSSP-SLGATIYASRF-------AANALRLIRRNS 681 (709)
Q Consensus 638 ~~~~~eery~~~~~~--------~p---~~~~-~~~~~~iASr~-------~~~~~~~~~~~~ 681 (709)
...++++|+..++.. .| .+.. .+++..+|+.+ .++.++.+++.+
T Consensus 136 ~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~g 198 (238)
T 2bgc_A 136 SINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEK 198 (238)
T ss_dssp HTTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHCC
Confidence 445566666555432 12 2344 78888888743 344555555443
No 41
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.52 E-value=1.5e-13 Score=143.29 Aligned_cols=127 Identities=18% Similarity=0.269 Sum_probs=110.8
Q ss_pred HHHHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCC
Q 005197 467 KRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAG 546 (709)
Q Consensus 467 ~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~G 546 (709)
..+...++|+++++|.+++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|. . +..+.+|
T Consensus 33 ~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~--~g~--~--~~~l~~G 106 (291)
T 2qcs_B 33 TMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV--NNE--W--ATSVGEG 106 (291)
T ss_dssp HHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE--TTE--E--EEEECTT
T ss_pred HHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE--CCe--E--EEEcCCC
Confidence 345567899999999999999999999999999999999999999999999999999999987 343 2 7899999
Q ss_pred CeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHH
Q 005197 547 DFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTF 608 (709)
Q Consensus 547 d~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~ 608 (709)
++||+.++ +.+.+ ++++++|.++|+++.|++++|..++.++|.+..+.+....
T Consensus 107 ~~fGe~~l---~~~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l 159 (291)
T 2qcs_B 107 GSFGELAL---IYGTP------RAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFL 159 (291)
T ss_dssp CEECGGGG---TCCCB------CSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHH---hcCCC------CceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999887 44444 3789999999999999999999999999987765555443
No 42
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.51 E-value=1.2e-13 Score=143.90 Aligned_cols=126 Identities=22% Similarity=0.336 Sum_probs=109.3
Q ss_pred HHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEec-CC-ceeeeeeeecCCCC
Q 005197 470 LCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTN-GG-RTGFFNSEYLGAGD 547 (709)
Q Consensus 470 ~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g-~~~~~~l~~l~~Gd 547 (709)
+...+++++++|..++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++... +| ++.. +..+++|+
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~--~~~l~~G~ 231 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVE--VGRLGPSD 231 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEE--EEEECTTC
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEE--EEEeCCCC
Confidence 44567888999999999999999999999999999999999999999999999999998643 33 3344 78999999
Q ss_pred eeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHH
Q 005197 548 FCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRH 606 (709)
Q Consensus 548 ~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~ 606 (709)
+|||.++ +.+.+ ++++++|.++|+++.|++++|.+++.++|++..+.++.
T Consensus 232 ~fGe~~l---l~~~~------~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~ 281 (291)
T 2qcs_B 232 YFGEIAL---LMNRP------KAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQ 281 (291)
T ss_dssp EECSGGG---TCCCC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHH
T ss_pred EecHHHH---cCCCC------cceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHH
Confidence 9999988 44444 38899999999999999999999999999877655554
No 43
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.51 E-value=1.1e-13 Score=152.04 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=113.5
Q ss_pred HHHHHHHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeec
Q 005197 464 RDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYL 543 (709)
Q Consensus 464 ~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l 543 (709)
.+-..+...++|+++++|++++++.+..|+..+..+.|++|++|+++||+++.+|||++|.|+++...+|++.. +..+
T Consensus 136 s~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~~~--v~~l 213 (416)
T 3tnp_B 136 TDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC--VGNY 213 (416)
T ss_dssp CHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCEEE--EEEE
T ss_pred CHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCEEE--EEEe
Confidence 34445566889999999999999999999999999999999999999999999999999999999877788776 7899
Q ss_pred CCCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHH
Q 005197 544 GAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHS 601 (709)
Q Consensus 544 ~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~ 601 (709)
.+|++|||.+++ .+.+ ++++++|.++|+++.|++++|..++.++|....
T Consensus 214 ~~G~~fGe~all---~~~p------r~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~ 262 (416)
T 3tnp_B 214 DNRGSFGELALM---YNTP------KAATITATSPGALWGLDRVTFRRIIVKNNAKKR 262 (416)
T ss_dssp ESCCEECGGGGT---SCCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHS
T ss_pred cCCCEEeeHHHh---cCCC------cccEEEEccCeEEEEEeehhhhhhhhcchhHHH
Confidence 999999999884 4444 388999999999999999999999999887543
No 44
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.50 E-value=2.7e-13 Score=126.92 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----hhHHHHHHHHHHHH
Q 005197 348 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQT------YLQS----TTTRLEEMRVKRRD 417 (709)
Q Consensus 348 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~------~l~~----~~~~~~e~~~k~~~ 417 (709)
.|..|+||+++|+||+||||++|.+..+++++++.+++|+++++++++.++. +.+. .+....+..+++++
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~ 131 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEA 131 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999999999999999999999999999999986 3332 34556667778899
Q ss_pred HHHHHHhCCCChhHHHH
Q 005197 418 AEQWMAHRLLPDTLRER 434 (709)
Q Consensus 418 ~~~~m~~~~lp~~L~~r 434 (709)
++++|++++.|++|+.|
T Consensus 132 i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 132 IEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHTTC------
T ss_pred HHHHHHhcCCCcCCCCC
Confidence 99999999999999876
No 45
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.50 E-value=6.6e-14 Score=141.82 Aligned_cols=117 Identities=17% Similarity=0.135 Sum_probs=103.8
Q ss_pred HHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 471 CLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 471 ~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
..++|+++++|.+++++.++.++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|+. +..+++|++||
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~--~~~~----~~~~~~g~~fG 78 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV--NDNK----VNSSGPGSSFG 78 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES--TTSC----CEEECTTCEEC
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE--CCEE----EEecCCCCeee
Confidence 46788999999999999999999999999999999999999999999999999999986 3333 68999999999
Q ss_pred hhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHH
Q 005197 551 EELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSK 602 (709)
Q Consensus 551 e~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~ 602 (709)
+.+++ .+.+ ++++++|.++|+++.|++++|..++.++|.....
T Consensus 79 e~~l~---~~~~------~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (246)
T 3of1_A 79 ELALM---YNSP------RAATVVATSDCLLWALDRLTFRKILLGSSFKKRL 121 (246)
T ss_dssp HHHHH---HTCC------CSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHH
T ss_pred hhHHh---cCCC------CCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHH
Confidence 99885 3344 3789999999999999999999999998865543
No 46
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.49 E-value=2.7e-14 Score=131.62 Aligned_cols=93 Identities=6% Similarity=0.187 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCC
Q 005197 348 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMAHRLL 427 (709)
Q Consensus 348 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~e~~~k~~~~~~~m~~~~l 427 (709)
.|..|+||+++|+|||||||++|.|..|++++++++++|++++|+++|.+++.+.....+..+.+...+..+...+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 38899999999999999999999999999999999999999999999999999876654443333332223333444566
Q ss_pred ChhHHHHHHHHHH
Q 005197 428 PDTLRERIRRYEQ 440 (709)
Q Consensus 428 p~~L~~rv~~y~~ 440 (709)
+++....+++|.+
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 6666666766654
No 47
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.49 E-value=9.7e-14 Score=140.56 Aligned_cols=118 Identities=20% Similarity=0.260 Sum_probs=105.3
Q ss_pred HHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCee
Q 005197 470 LCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 549 (709)
Q Consensus 470 ~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~f 549 (709)
+...+++++++|..++++.+..++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+++ . +..+++|++|
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~---~--~~~l~~g~~f 196 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG---V--INKLKDHDYF 196 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTE---E--EEEEETTCEE
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCc---e--EEEcCCCCcc
Confidence 3456778899999999999999999999999999999999999999999999999999886554 2 7899999999
Q ss_pred ehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHH
Q 005197 550 GEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHS 601 (709)
Q Consensus 550 Ge~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~ 601 (709)
||.+++ .+.+ |+++++|.++|+++.|++++|.+++..+|++..
T Consensus 197 Ge~~~~---~~~~------~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 197 GEVALL---NDLP------RQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp CHHHHH---HTCB------CSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred cHHHHh---CCCC------cccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 999985 3444 378999999999999999999999999997654
No 48
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=150.56 Aligned_cols=128 Identities=20% Similarity=0.285 Sum_probs=110.6
Q ss_pred HHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEec-CCc-eeeeeeeecCCC
Q 005197 469 HLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTN-GGR-TGFFNSEYLGAG 546 (709)
Q Consensus 469 ~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~-~~~~~l~~l~~G 546 (709)
.++..+++++++|..++++.+..++..++.+.|++|++|+++|++++.+|||.+|.|+++..+ +|+ +.. +..+++|
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~--v~~l~~G 321 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVE--VGRLGPS 321 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCE--EEEECTT
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEE--EEEeCCC
Confidence 345678888999999999999999999999999999999999999999999999999999853 333 333 7899999
Q ss_pred CeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHH
Q 005197 547 DFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHT 607 (709)
Q Consensus 547 d~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~ 607 (709)
++|||.+++ .+.++ +++++|.++|+++.|++++|.+++..+|++..+.++..
T Consensus 322 d~fGe~all---~~~~r------~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~ 373 (381)
T 4din_B 322 DYFGEIALL---LNRPR------AATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRY 373 (381)
T ss_dssp CEECTTGGG---SCCBC------SSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHH
T ss_pred CEechHHHh---CCCCc------eeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999984 44443 88999999999999999999999999998776555543
No 49
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.44 E-value=3.3e-13 Score=146.68 Aligned_cols=125 Identities=16% Similarity=0.211 Sum_probs=108.9
Q ss_pred HHHHHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCC
Q 005197 466 IKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGA 545 (709)
Q Consensus 466 i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~ 545 (709)
-.++...++++++++|++++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +|+. +..+++
T Consensus 123 ~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~--~~~~----v~~l~~ 196 (381)
T 4din_B 123 KTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV--NGEW----VTNISE 196 (381)
T ss_dssp HHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE--TTEE----EEEEES
T ss_pred HHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE--CCeE----eeeCCC
Confidence 3345567899999999999999999999999999999999999999999999999999999987 3432 678999
Q ss_pred CCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHH
Q 005197 546 GDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLR 605 (709)
Q Consensus 546 Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~ 605 (709)
|++||+.+++ .+.+ ++++++|.++|+++.|++++|..++.++|....+.+.
T Consensus 197 G~~fGe~all---~~~~------r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~ 247 (381)
T 4din_B 197 GGSFGELALI---YGTP------RAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYE 247 (381)
T ss_dssp SCCBCGGGGT---SCCB------CSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEchHHh---cCCC------cceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHH
Confidence 9999999884 4444 3789999999999999999999999999976554333
No 50
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.43 E-value=6.3e-13 Score=119.91 Aligned_cols=60 Identities=13% Similarity=0.401 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 005197 347 KKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTT 406 (709)
Q Consensus 347 ~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~ 406 (709)
..|..|+||++.|+||+||||++|.+..+++++++.+++|++++++.+|.+++.+.+...
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999999999999999999876544
No 51
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.43 E-value=6.5e-13 Score=148.28 Aligned_cols=137 Identities=19% Similarity=0.199 Sum_probs=119.3
Q ss_pred hCChhhHHHHHHHHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe-cCCce
Q 005197 457 NLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRT 535 (709)
Q Consensus 457 ~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~ 535 (709)
..|+..|.+.......+.++++++|.++++++++.++..+..+.|++|++|+++||+++.+|+|.+|.|+++.. .+|++
T Consensus 26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~ 105 (469)
T 1o7f_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ 105 (469)
T ss_dssp TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGG
T ss_pred cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCC
Confidence 35778888888888899999999999999999999999999999999999999999999999999999999884 45543
Q ss_pred --eeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHH
Q 005197 536 --GFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLR 605 (709)
Q Consensus 536 --~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~ 605 (709)
.+ +..+++|++||+.+ + .+.+ ++++++|.++|+++.|++++|..++.++|.+....++
T Consensus 106 ~~~~--~~~~~~G~~fGe~~-l---~~~~------~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~ 165 (469)
T 1o7f_A 106 DAVT--ICTLGIGTAFGESI-L---DNTP------RHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLA 165 (469)
T ss_dssp GCEE--EEEECTTCEECGGG-G---GTCB------CSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSC
T ss_pred cceE--EEEccCCCCcchhh-h---CCCC------ccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHH
Confidence 44 78999999999987 4 2233 3789999999999999999999999999986654443
No 52
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.42 E-value=4e-13 Score=147.65 Aligned_cols=124 Identities=12% Similarity=0.228 Sum_probs=105.3
Q ss_pred HHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecC-------Cceeeeeeeec
Q 005197 471 CLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNG-------GRTGFFNSEYL 543 (709)
Q Consensus 471 ~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~-------g~~~~~~l~~l 543 (709)
+..+++++++|..++++.+..++..+..+.|.+|++|+++|++++.+|||.+|.|+++..+. |++.. +..+
T Consensus 265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~--l~~l 342 (416)
T 3tnp_B 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVE--IARC 342 (416)
T ss_dssp SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CE--EEEE
T ss_pred HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeE--EEEe
Confidence 34578889999999999999999999999999999999999999999999999999987543 55655 7899
Q ss_pred CCCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHH
Q 005197 544 GAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLR 605 (709)
Q Consensus 544 ~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~ 605 (709)
++|++|||.+++ .+.+ ++++++|.++|+++.|++++|.+++..+|++..+.++
T Consensus 343 ~~G~~fGE~all---~~~~------r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~ 395 (416)
T 3tnp_B 343 FRGQYFGELALV---TNKP------RAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIA 395 (416)
T ss_dssp CTTCEESGGGGT---CCSC------CSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC--
T ss_pred CCCCEecHHHHh---CCCC------ceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHH
Confidence 999999999984 4444 3889999999999999999999999999987554333
No 53
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.39 E-value=1.1e-12 Score=128.53 Aligned_cols=137 Identities=16% Similarity=0.120 Sum_probs=100.7
Q ss_pred eeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEec
Q 005197 499 VLYTEESYIVREGDPVDEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALT 577 (709)
Q Consensus 499 ~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~ 577 (709)
+.|++|++|+++||+++.+|+|.+|.|+++.. .+|++.+ +..+++|++||+ ++ +.+.++ .++++|++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~--~~~~~~G~~~Ge-~~---~~~~~~------~~~~~A~~ 69 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLIT--LRHVLPGDYFGE-EA---LEGKAY------RYTAEAMT 69 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEE--EEEECTTCEECG-GG---GTCSBC------SSEEEESS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEE--EEEecCCCEech-hh---hCCCCc------eeEEEECC
Confidence 67999999999999999999999999999874 5677766 789999999999 87 444443 78999999
Q ss_pred cceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----
Q 005197 578 EVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEESLRAEENRLQDALAKA---- 653 (709)
Q Consensus 578 ~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~~~r~~~~~~~~~eery~~~~~~~---- 653 (709)
+|+++.|++++|. |++....++...+. .+...++.......++++|+..++...
T Consensus 70 ~~~v~~i~~~~~~------p~~~~~~~~~l~~~----------------l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~ 127 (195)
T 3b02_A 70 EAVVQGLEPRAMD------HEALHRVARNLARQ----------------MRRVQAYEAHLQTGELRARIARYLLFLADTP 127 (195)
T ss_dssp SEEEEEECGGGCC------HHHHHHHHHHHHHH----------------HHHHHHHHHHHTSSCHHHHHHHHHHHHTTST
T ss_pred cEEEEEEcHHHcC------HHHHHHHHHHHHHH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 9999999999998 77666555443321 222333444445566778877666542
Q ss_pred CC------CCCCccchHhHhHH
Q 005197 654 GG------SSPSLGATIYASRF 669 (709)
Q Consensus 654 p~------~~~~~~~~~iASr~ 669 (709)
+. +...+++..+|+.+
T Consensus 128 ~~~~~~~~~~~~~t~~~lA~~l 149 (195)
T 3b02_A 128 LSARDRQGIYVTVSHEEIADAT 149 (195)
T ss_dssp TEEEETTEEEEECCHHHHHHTT
T ss_pred CCCCCCCeeeccCCHHHHHHHh
Confidence 21 33456777777543
No 54
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.38 E-value=1.4e-12 Score=145.45 Aligned_cols=122 Identities=11% Similarity=0.151 Sum_probs=104.0
Q ss_pred HHHHHhHhccchhhccCcHHHHHHHHhhccee-eeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCC
Q 005197 468 RHLCLALLMRVPLFEKMDEQLLDALCDRLKPV-LYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAG 546 (709)
Q Consensus 468 ~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~-~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~G 546 (709)
.....+.++++++|.+++++.+..++..+... .|++|++|+++||+++.+|||.+|.|+++....+ + +..+++|
T Consensus 332 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~---~--~~~l~~G 406 (469)
T 1o7f_A 332 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKG---V--VCTLHEG 406 (469)
T ss_dssp HHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTE---E--EEEEETT
T ss_pred HHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCe---e--EEEecCC
Confidence 34456789999999999999999999999854 9999999999999999999999999999874321 3 7899999
Q ss_pred CeeehhhhhhhcCCCCCCCCCCcceEEEEec-cceeeeeCHHHHHHHHHHhHHHHHHH
Q 005197 547 DFCGEELLTWALDPQSSSNLPISTRTVRALT-EVEAFALMADDLKFVASQFRRLHSKQ 603 (709)
Q Consensus 547 d~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~-~~~vl~L~~~~f~~l~~~~p~l~~~~ 603 (709)
++||+.++ +.+.+ ++++++|++ +|+++.|++++|..++.++|.+..++
T Consensus 407 ~~fGe~~l---l~~~~------~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l 455 (469)
T 1o7f_A 407 DDFGKLAL---VNDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL 455 (469)
T ss_dssp CEECGGGG---TCCSC------CSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC----
T ss_pred CEEEEehh---hcCCC------ceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHH
Confidence 99999998 44444 388999998 79999999999999999999876543
No 55
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.33 E-value=7.2e-12 Score=115.91 Aligned_cols=60 Identities=15% Similarity=0.453 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 005197 347 KKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTT 406 (709)
Q Consensus 347 ~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~ 406 (709)
..|..|+||+++|+|||||||++|.+..+++++++.+++|+++++++++.+.+.+.+...
T Consensus 39 ~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 39 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999999999999999999999999988765443
No 56
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.33 E-value=2.5e-12 Score=126.54 Aligned_cols=143 Identities=16% Similarity=0.128 Sum_probs=101.8
Q ss_pred HHhhcceeeeCCCCEEEccCCCC--CeEEEEEeeeEEEEE-ecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCC
Q 005197 492 LCDRLKPVLYTEESYIVREGDPV--DEMLFIMRGKLLTIT-TNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPI 568 (709)
Q Consensus 492 L~~~l~~~~~~~ge~I~~eGd~~--~~lyfI~~G~v~v~~-~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~ 568 (709)
+...++.+.|++|++|+++||++ +.+|+|.+|.|+++. ..+|++.+ +..+++|++||+ +++ .+.+
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~--~~~~~~g~~~G~-~~l---~~~~------ 68 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALT--LRLVRPGGFFGE-EAL---FGQE------ 68 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEE--EEEECTTCEECT-HHH---HTCC------
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEE--EEEecCCCEeee-hhc---CCCC------
Confidence 34567889999999999999999 999999999999987 45777766 789999999999 663 2333
Q ss_pred cceEEEEeccceeeeeCHHHHHHHHHHhHHHHHHHHHHHHHHhhHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005197 569 STRTVRALTEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEESLRAEENRLQD 648 (709)
Q Consensus 569 ~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~~~l~~~~r~~s~~~~~~~~~~iq~~~~~~~~r~~~~~~~~~eery~~ 648 (709)
+.++++|+++|+++.+ +++|. |++....++...+ ......++.......++++|+..
T Consensus 69 ~~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~~----------------~l~~~~~~~~~~~~~~~~~Rl~~ 125 (202)
T 2zcw_A 69 RIYFAEAATDVRLEPL-PENPD------PELLKDLAQHLSQ----------------GLAEAYRRIERLATQRLKNRMAA 125 (202)
T ss_dssp BCSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHHH----------------HHHHHHHHHHHHHHCCHHHHHHH
T ss_pred cceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHHH----------------HHHHHHHHHHHHhcCCHHHHHHH
Confidence 3779999999999999 98886 6665544444332 12223344445555667788776
Q ss_pred hhhhcC----------CCCCCccchHhHhHH
Q 005197 649 ALAKAG----------GSSPSLGATIYASRF 669 (709)
Q Consensus 649 ~~~~~p----------~~~~~~~~~~iASr~ 669 (709)
++.... .+...+++..+|+.+
T Consensus 126 ~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~l 156 (202)
T 2zcw_A 126 ALLELSETPLAHEEEGKVVLKATHDELAAAV 156 (202)
T ss_dssp HHHHHTTSTTEEEETTEEEEECCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcEEccCCCHHHHHHHh
Confidence 665532 234557777787655
No 57
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.29 E-value=1.3e-11 Score=150.52 Aligned_cols=136 Identities=21% Similarity=0.215 Sum_probs=112.0
Q ss_pred HHHhhCChhhHHHHHHHHHHhHhccchhhccCcHHHHHHHHhhcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEec-
Q 005197 453 NLLCNLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTN- 531 (709)
Q Consensus 453 ~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~- 531 (709)
..|++-| .-|.+-..++....|+++++|+++++..+.+||..+..+.|++|++|+++||+++.+|+|++|.|.++..+
T Consensus 23 ~~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~ 101 (999)
T 4f7z_A 23 ACLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSET 101 (999)
T ss_dssp HHHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSS
T ss_pred HHhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecC
Confidence 3444544 34544444555678999999999999999999999999999999999999999999999999999998742
Q ss_pred --CCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCHHHHHHHHHHhHHHHH
Q 005197 532 --GGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQFRRLHS 601 (709)
Q Consensus 532 --~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~~~f~~l~~~~p~l~~ 601 (709)
++.+.. +..+++|+.||| ++ +.+.+ |++|++|.++|++++|++++|+.++.++|+...
T Consensus 102 ~~~~~~~~--v~~l~~G~sFGE-al---l~n~p------RtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~ 161 (999)
T 4f7z_A 102 SSHQDAVT--ICTLGIGTAFGE-SI---LDNTP------RHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161 (999)
T ss_dssp SCTTSCEE--EEEEETTCEECG-GG---GGTCC------CSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred CCCCCcee--EEEecCCcchhh-hh---ccCCC------cceEEEeccceEEEEEEHHHHHHHHHhChHHHH
Confidence 223333 789999999999 55 33444 489999999999999999999999999997543
No 58
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.27 E-value=1.4e-11 Score=128.24 Aligned_cols=61 Identities=8% Similarity=0.016 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHhhccccCCC-CCC-CCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 005197 346 PKKFFYCFWWGLRNLSSLGQN-LET-STYVWE----ICFAVFISISGLVLFSFLIGNMQTYLQSTTT 406 (709)
Q Consensus 346 ~~~Y~~slyw~l~tlttvGyg-d~~-~~~~~E----~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~ 406 (709)
+..+..|+||+++++||+||| |+. |.+... ..+++++++.|.++++..+|.+.+.++....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999 985 665533 8899999999999999999999988776544
No 59
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.27 E-value=9.7e-12 Score=144.59 Aligned_cols=133 Identities=12% Similarity=0.169 Sum_probs=111.6
Q ss_pred HHHHhhCChhhHHHHHHHHHHhHhccchhhccCcHHHHHHHHhhcc-eeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEe
Q 005197 452 ENLLCNLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLK-PVLYTEESYIVREGDPVDEMLFIMRGKLLTITT 530 (709)
Q Consensus 452 ~~ll~~Lp~~Lr~~i~~~~~~~~L~~v~lF~~ls~~~l~~L~~~l~-~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~ 530 (709)
..++...| ..|.+.......+.++++++|.+++++.++.++..+. .+.|++|++|+++||+++.+|||++|.|+++..
T Consensus 12 r~iL~k~p-~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRKPP-GQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHSCG-GGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcCCh-hhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 44554444 4455555555678999999999999999999999998 689999999999999999999999999999875
Q ss_pred cCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEec-cceeeeeCHHHHHHHHHHhHHH
Q 005197 531 NGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALT-EVEAFALMADDLKFVASQFRRL 599 (709)
Q Consensus 531 ~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~-~~~vl~L~~~~f~~l~~~~p~l 599 (709)
+ + .+ +..+++|++||+.+++ .+.+ +.++++|++ +|+++.|++++|.+++.++|.+
T Consensus 91 g--~-~i--l~~l~~Gd~fGe~al~---~~~~------~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 91 G--K-GV--VCTLHEGDDFGKLALV---NDAP------RAASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp T--T-EE--EEEEETTCEECHHHHH---HTCB------CSSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred C--C-EE--EEEeCCCCEeehHHHh---CCCC------ceEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 2 2 33 7899999999999875 3333 377999999 5999999999999999988875
No 60
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.15 E-value=1.4e-10 Score=141.44 Aligned_cols=115 Identities=11% Similarity=0.158 Sum_probs=100.2
Q ss_pred HHHHhHhccchhhccCcHHHHHHHHhhcceee-eCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCC
Q 005197 469 HLCLALLMRVPLFEKMDEQLLDALCDRLKPVL-YTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGD 547 (709)
Q Consensus 469 ~~~~~~L~~v~lF~~ls~~~l~~L~~~l~~~~-~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd 547 (709)
+...+.+.+++.|++++......|+..+.... +++|++|++|||.++.+|||++|.|+++...++. ++.+++||
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~~~~~~-----v~~L~~Gd 407 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGV-----VCTLHEGD 407 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEETTTEE-----EEEEETTC
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEEcCCcc-----eEEecCCC
Confidence 44567899999999999999999999998765 5789999999999999999999999998754432 68899999
Q ss_pred eeehhhhhhhcCCCCCCCCCCcceEEEEecc-ceeeeeCHHHHHHHHHHhH
Q 005197 548 FCGEELLTWALDPQSSSNLPISTRTVRALTE-VEAFALMADDLKFVASQFR 597 (709)
Q Consensus 548 ~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~-~~vl~L~~~~f~~l~~~~p 597 (709)
+|||.++ +.+.|+ .+|++|.++ |+++++++++|.+++.+-.
T Consensus 408 ~FGElAL---L~~~PR------~aTV~a~~d~c~fl~i~k~df~~il~~~e 449 (999)
T 4f7z_A 408 DFGKLAL---VNDAPR------AASIVLREDNCHFLRVDKEDGNRILRDVE 449 (999)
T ss_dssp EECGGGG---TCSCBC------SSEEEESSSSEEEEEEEHHHHHHHHHHHH
T ss_pred cccchhh---ccCCCe------eEEEEEecCceEEEEeeHHHHHHHHhHHH
Confidence 9999998 566664 889999985 9999999999999997743
No 61
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.15 E-value=2.1e-10 Score=101.95 Aligned_cols=60 Identities=12% Similarity=0.184 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005197 348 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTR 407 (709)
Q Consensus 348 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~ 407 (709)
.|..|+||+++|+||+||||++|.+..+++++++.+++|+.++++.++.+.+.++.....
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~ 108 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 108 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999999999999999999999999999999999988655433
No 62
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.14 E-value=2.1e-11 Score=106.53 Aligned_cols=61 Identities=11% Similarity=0.228 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005197 347 KKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTR 407 (709)
Q Consensus 347 ~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~ 407 (709)
..|..|+||++.|+||+||||++|.+..+++++++.+++|++++++++|.+.+.+.+...+
T Consensus 39 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~ 99 (103)
T 2k1e_A 39 ISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREEE 99 (103)
T ss_dssp CCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHHH
T ss_pred ccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999988765443
No 63
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.09 E-value=5.3e-10 Score=96.29 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005197 348 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQST 404 (709)
Q Consensus 348 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~ 404 (709)
.|..|+||++.|+||+||||+.|.+..+++++++.+++|+.+++++++.++..++..
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 88 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 378899999999999999999999999999999999999999999999999887643
No 64
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.95 E-value=1.3e-09 Score=90.84 Aligned_cols=54 Identities=11% Similarity=0.349 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005197 348 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYL 401 (709)
Q Consensus 348 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l 401 (709)
.|..|+||++.|+||+||||+.|.+..+++++++.+++|+.++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999998865
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.93 E-value=7.1e-11 Score=112.52 Aligned_cols=64 Identities=14% Similarity=0.443 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 005197 347 KKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEE 410 (709)
Q Consensus 347 ~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~~~e 410 (709)
..|..|+||+++|+|||||||++|.+..+++++++.+++|++++++++|.+++.+.....+..+
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~ 129 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQ 129 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999998876654443
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.82 E-value=1.2e-08 Score=106.14 Aligned_cols=56 Identities=7% Similarity=0.182 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005197 347 KKFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQ 402 (709)
Q Consensus 347 ~~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~ 402 (709)
..|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+.
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999998887664
No 67
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.76 E-value=1.1e-08 Score=107.62 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005197 348 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTT 405 (709)
Q Consensus 348 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~ 405 (709)
.|..|+||++.|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+....
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999998876543
No 68
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.70 E-value=4e-08 Score=101.80 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005197 348 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQST 404 (709)
Q Consensus 348 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~ 404 (709)
.|..|+||+++|+|||||||++|.|..+++|+++.+++|+.+++++++.+++.+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999999999988653
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.69 E-value=5.4e-08 Score=101.95 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005197 348 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTT 405 (709)
Q Consensus 348 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~ 405 (709)
.|..|+||+++|+|||||||+.|.+..+++++++.+++|++++|+++|.+.+.+....
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999998876543
No 70
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.56 E-value=2.9e-07 Score=96.48 Aligned_cols=60 Identities=17% Similarity=0.320 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHhhccccCCCCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 005197 347 KKFFYCFWWGLRNLSSLGQNLETST--YVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTT 406 (709)
Q Consensus 347 ~~Y~~slyw~l~tlttvGygd~~~~--~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~~ 406 (709)
..+..++||++.|+|||||||+.|+ +...++++++.+++|+++.|+++|.+.+-+..-..
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 151 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKK 151 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 3467799999999999999999997 68899999999999999999999999877665443
No 71
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.47 E-value=5.5e-07 Score=102.72 Aligned_cols=55 Identities=16% Similarity=0.352 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 005197 348 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGN-MQTYLQ 402 (709)
Q Consensus 348 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~-~~~~l~ 402 (709)
.|+.|+||+++|+||+||||++|.+..+++++++++++|++++++.++. +.+.+.
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 106 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFL 106 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999998 555443
No 72
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.41 E-value=1.1e-06 Score=92.07 Aligned_cols=59 Identities=20% Similarity=0.403 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHhhccccCCCCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005197 347 KKFFYCFWWGLRNLSSLGQNLETST--YVWEICFAVFISISGLVLFSFLIGNMQTYLQSTT 405 (709)
Q Consensus 347 ~~Y~~slyw~l~tlttvGygd~~~~--~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~ 405 (709)
..+..+|||++.|+||+||||..|+ +...++++++.+++|+++.|+++|.+..-+..-.
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4578899999999999999999864 8899999999999999999999998887665443
No 73
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=98.37 E-value=7.2e-06 Score=82.05 Aligned_cols=75 Identities=17% Similarity=0.188 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhceeeeecCCcceeecCccchhHHHHHHHHHHHHHHHHHHHhcceeEEcCCCcccCCCeEe
Q 005197 93 KWNKIFVLSCVIAVSLDPLFFYVPVINGDRKCVDLDKKMETTASVLRSFTDIFYIFHIILQFRTGFIAPSSRVFGRGVLV 172 (709)
Q Consensus 93 ~W~~~~~i~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~di~f~~Di~l~f~t~y~~~~~~~~~~g~lV 172 (709)
.++.++.++++.+++..-+.. . ..+......+..++.++-++|.+|+++++... |
T Consensus 13 ~f~~~i~~~I~ln~i~l~~~~-~----------~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~-----------~--- 67 (229)
T 4dxw_A 13 IFQFTVVSIIILNAVLIGATT-Y----------ELDPLFLETIHLLDYGITIFFVIEILIRFIGE-----------K--- 67 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTTCC-S----------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred hHHHHHHHHHHHHHHHHHHcc-C----------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------C---
Confidence 567777777777776654431 1 11233355788899999999999999998753 1
Q ss_pred cCHHHHHHHHhhh-hHHHHHHhhCCh
Q 005197 173 EDTWLIAKKYMSS-HFLVDILAVLPL 197 (709)
Q Consensus 173 ~d~~~Ia~~Yl~~-~F~iDlls~lP~ 197 (709)
-.++|.++ |-++|++.++|.
T Consensus 68 -----~~~~y~~~~wni~D~~~v~~~ 88 (229)
T 4dxw_A 68 -----QKADFFKSGWNIFDTVIVAIS 88 (229)
T ss_dssp ------------CHHHHHHHHHHHHT
T ss_pred -----chhHHhcCCcHHHHHHHHHHH
Confidence 13578888 899998877764
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.36 E-value=5.5e-07 Score=91.81 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005197 348 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQ 402 (709)
Q Consensus 348 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~ 402 (709)
.|..|+||+++|+||+||||++|.|...++++++.+++|+.+++++++.+...+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999986554
No 75
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.31 E-value=2e-07 Score=96.46 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCchhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 005197 348 KFFYCFWWGLRNLSSLGQNLETSTYVWEI------CFAVFISISGLVLFSFLIGNMQTYLQSTTTR 407 (709)
Q Consensus 348 ~Y~~slyw~l~tlttvGygd~~~~~~~E~------~~~i~~~i~G~~~fa~lig~~~~~l~~~~~~ 407 (709)
.|+.|+||++.|+|||||||+.|.+..++ +++++++++|+.+++++++.+++.+.....+
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r 289 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRR 289 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999988876 5999999999999999999999888766543
No 76
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.25 E-value=6.4e-07 Score=91.35 Aligned_cols=57 Identities=12% Similarity=0.147 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhccccCCCCCCCCchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005197 349 FFYCFWWGLRNLSSLGQNLETSTYVW-------EICFAVFISISGLVLFSFLIGNMQTYLQSTT 405 (709)
Q Consensus 349 Y~~slyw~l~tlttvGygd~~~~~~~-------E~~~~i~~~i~G~~~fa~lig~~~~~l~~~~ 405 (709)
|+.|+||++.|+|||||||+.|.+.. .++++++++++|+.+++++++.+.++++...
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~ 265 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKK 265 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999874 4999999999999999999999998876544
No 77
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.06 E-value=3e-07 Score=97.79 Aligned_cols=56 Identities=13% Similarity=0.360 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005197 349 FFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQST 404 (709)
Q Consensus 349 Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~~ 404 (709)
|..|+||++.|+||+||||++|.+..+++++++++++|+++++++++.+.+.+...
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55689999999999999999999999999999999999999999999999887654
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.67 E-value=7.8e-05 Score=68.85 Aligned_cols=78 Identities=10% Similarity=0.058 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhceeeeecCCcceeecCccchhHHHHHHHHHHHHHHHHHHHhcceeEEcCCCcccCCCeEe
Q 005197 93 KWNKIFVLSCVIAVSLDPLFFYVPVINGDRKCVDLDKKMETTASVLRSFTDIFYIFHIILQFRTGFIAPSSRVFGRGVLV 172 (709)
Q Consensus 93 ~W~~~~~i~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~di~f~~Di~l~f~t~y~~~~~~~~~~g~lV 172 (709)
.|+.++.++.+.++++.-+..+.+. +......+..++.++-++|.+|+++++..+-
T Consensus 22 ~f~~~i~~lil~sv~~v~~et~~~i----------~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a~-------------- 77 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVEYTMQL----------SGEYLVRLYLVDLILVIILWADYAYRAYKSG-------------- 77 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhh----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------
Confidence 4777777777777766655532211 1222456788999999999999999998751
Q ss_pred cCHHHHHHHHhhhhHHHHHHhhCChhhh
Q 005197 173 EDTWLIAKKYMSSHFLVDILAVLPLPQV 200 (709)
Q Consensus 173 ~d~~~Ia~~Yl~~~F~iDlls~lP~~~i 200 (709)
| .++|+++ -++|++|++|+...
T Consensus 78 -~----k~~f~~~-~iiDllailP~~~~ 99 (147)
T 2kyh_A 78 -D----PAGYVKK-TLYEIPALVPAGLL 99 (147)
T ss_dssp -C----HHHHHHH-STTTHHHHCCHHHH
T ss_pred -c----HHHHHHH-HHHHHHHHHHHHHH
Confidence 1 3578887 68999999998644
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=97.37 E-value=0.00019 Score=65.11 Aligned_cols=80 Identities=10% Similarity=0.043 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhceeeeecCCcceeecCccchhHHHHHHHHHHHHHHHHHHHhcceeEEcCCCcccCCCeE
Q 005197 92 QKWNKIFVLSCVIAVSLDPLFFYVPVINGDRKCVDLDKKMETTASVLRSFTDIFYIFHIILQFRTGFIAPSSRVFGRGVL 171 (709)
Q Consensus 92 ~~W~~~~~i~~~~~~~~~P~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~di~f~~Di~l~f~t~y~~~~~~~~~~g~l 171 (709)
..++.+++++.+.+++..-+..+ |. .+......+..+|.++-++|.+|+++++.++ ++
T Consensus 6 ~~f~~~i~~lIlls~~~~~~et~-~~---------~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~---~~--------- 63 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVEYT-MQ---------LSGEYLVRLYLVDLILVIILWADYAYRAYKS---GD--------- 63 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-SC---------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TS---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-hh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC---------
Confidence 34677777777777666555422 11 1222345678899999999999999999864 11
Q ss_pred ecCHHHHHHHHhhhhHHHHHHhhCChhhhh
Q 005197 172 VEDTWLIAKKYMSSHFLVDILAVLPLPQVV 201 (709)
Q Consensus 172 V~d~~~Ia~~Yl~~~F~iDlls~lP~~~i~ 201 (709)
.++|++ |-++|+++++|+....
T Consensus 64 -------~~~y~~-~niiDllailp~~~~~ 85 (132)
T 1ors_C 64 -------PAGYVK-KTLYEIPALVPAGLLA 85 (132)
T ss_dssp -------TTTTTT-TCGGGTGGGSCHHHHH
T ss_pred -------HHHHHH-HHHHHHHHHHHHHHHH
Confidence 247888 9999999999986443
No 80
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=73.37 E-value=11 Score=36.67 Aligned_cols=68 Identities=10% Similarity=0.201 Sum_probs=52.2
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEE
Q 005197 496 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRA 575 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A 575 (709)
+....+.+|+.+=..-.+.+.+.+|++|.+++... |+ ...+++||++= ..+.. ...+.|
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~~~-------~p~~~-------~H~~~a 97 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFIE--NN-----KKTISNGDFLE-------ITANH-------NYSIEA 97 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEES--SC-----EEEEETTEEEE-------ECSSC-------CEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEEC--CE-----EEEECCCCEEE-------ECCCC-------CEEEEE
Confidence 34557899999988778899999999999998773 33 35789998773 22221 458889
Q ss_pred eccceeeee
Q 005197 576 LTEVEAFAL 584 (709)
Q Consensus 576 ~~~~~vl~L 584 (709)
.+++.++.+
T Consensus 98 ~~~~~~l~i 106 (227)
T 3rns_A 98 RDNLKLIEI 106 (227)
T ss_dssp SSSEEEEEE
T ss_pred CCCcEEEEE
Confidence 999999877
No 81
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=73.19 E-value=12 Score=31.76 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=46.5
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEE
Q 005197 496 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRA 575 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A 575 (709)
+....+++|..+-..-.+.+++++|++|.+++.. +|+ ...+++||.+= +.+.. ...+.+
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~~~-----~~~l~~Gd~i~-------ip~~~-------~H~~~~ 96 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV--DGA-----QRRLHQGDLLY-------LGAGA-------AHDVNA 96 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE--TTE-----EEEECTTEEEE-------ECTTC-------CEEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE--CCE-----EEEECCCCEEE-------ECCCC-------cEEEEe
Confidence 3445778888876666667899999999999876 333 35789999874 22221 346778
Q ss_pred eccceeee
Q 005197 576 LTEVEAFA 583 (709)
Q Consensus 576 ~~~~~vl~ 583 (709)
.+++.++.
T Consensus 97 ~~~~~~~~ 104 (114)
T 3fjs_A 97 ITNTSLLV 104 (114)
T ss_dssp SSSEEEEE
T ss_pred CCCcEEEE
Confidence 88876544
No 82
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=70.91 E-value=12 Score=31.62 Aligned_cols=64 Identities=9% Similarity=0.142 Sum_probs=41.5
Q ss_pred eeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccc
Q 005197 500 LYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEV 579 (709)
Q Consensus 500 ~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~ 579 (709)
.+.+|..+-....+..++++|++|.+.+.. +++ ...+++||.+= +.+.. ...+.+.+++
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i--~~~-----~~~l~~Gd~i~-------i~~~~-------~H~~~~~~~~ 102 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITF--DDQ-----KIDLVPEDVLM-------VPAHK-------IHAIAGKGRF 102 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEE--TTE-----EEEECTTCEEE-------ECTTC-------CBEEEEEEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEE--CCE-----EEEecCCCEEE-------ECCCC-------cEEEEeCCCc
Confidence 456776554444567799999999999766 333 35799999874 22221 2355666777
Q ss_pred eeeee
Q 005197 580 EAFAL 584 (709)
Q Consensus 580 ~vl~L 584 (709)
.++.+
T Consensus 103 ~~~~i 107 (114)
T 2ozj_A 103 KMLQI 107 (114)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66654
No 83
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=65.59 E-value=7.3 Score=45.48 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005197 348 KFFYCFWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQS 403 (709)
Q Consensus 348 ~Y~~slyw~l~tlttvGygd~~~~~~~E~~~~i~~~i~G~~~fa~lig~~~~~l~~ 403 (709)
....++|+++.+++..| ++..|.+...+++.++++++++++.+.-.++++++|..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46689999999998888 67899999999999999999999999999999999975
No 84
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=61.96 E-value=25 Score=29.34 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=44.2
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEE
Q 005197 496 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRA 575 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A 575 (709)
+....+.+|..+-..-....++++|++|.+.+.. +|+ ...+.+||++= ..+.. ...+.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~-------ip~~~-------~H~~~~ 100 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI--DQE-----TYRVAEGQTIV-------MPAGI-------PHALYA 100 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEE-------ECTTS-------CEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE-------ECCCC-------CEEEEE
Confidence 3445677888764444446799999999998765 333 35789999874 22221 335667
Q ss_pred eccceeeee
Q 005197 576 LTEVEAFAL 584 (709)
Q Consensus 576 ~~~~~vl~L 584 (709)
.++++++.+
T Consensus 101 ~~~~~~~~v 109 (115)
T 1yhf_A 101 VEAFQMLLV 109 (115)
T ss_dssp SSCEEEEEE
T ss_pred CCCceEEEE
Confidence 777776654
No 85
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=60.60 E-value=28 Score=29.09 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=44.5
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEE
Q 005197 496 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRA 575 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A 575 (709)
+....+.+|..+-.--.+..++++|++|.+.+.. +|+ ...+.+||.+= ..+.. ...+.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~-------ip~~~-------~H~~~~ 94 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV--DGV-----IKVLTAGDSFF-------VPPHV-------DHGAVC 94 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTCEEE-------ECTTC-------CEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE--CCE-----EEEeCCCCEEE-------ECcCC-------ceeeEe
Confidence 3445678887754333446789999999998776 333 35799999863 22221 335666
Q ss_pred eccceeeee
Q 005197 576 LTEVEAFAL 584 (709)
Q Consensus 576 ~~~~~vl~L 584 (709)
.++++++.+
T Consensus 95 ~~~~~~l~v 103 (116)
T 2pfw_A 95 PTGGILIDT 103 (116)
T ss_dssp SSCEEEEEE
T ss_pred CCCcEEEEE
Confidence 677777665
No 86
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=59.60 E-value=19 Score=31.07 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=33.5
Q ss_pred eeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 498 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 498 ~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
...+.||..+-.. ...+++++|++|.+++.. +|+ ...+++||.+-
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~--~g~-----~~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST--DGE-----TVTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE--CCE-----EEEECCCCEEE
Confidence 3467788765443 377899999999999876 344 35799999884
No 87
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=56.50 E-value=28 Score=32.17 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=27.5
Q ss_pred CCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 513 PVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 513 ~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
+.++++++++|.+.+...++|+.. -..+++||+|=
T Consensus 54 ~~dE~FyvlkG~m~i~v~d~g~~~---~v~l~eGE~f~ 88 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWVDGRRE---RADLKEGDIFL 88 (174)
T ss_dssp SSCEEEEEEESCEEEEEEETTEEE---EEEECTTCEEE
T ss_pred CCceEEEEEeeEEEEEEEcCCcee---eEEECCCCEEE
Confidence 467999999999998876655432 35899999984
No 88
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=52.40 E-value=38 Score=28.79 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=34.9
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 496 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
+....+.+|..+-..-.+..++++|++|.+++.. +|+ ...+++||.+=
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 90 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI--GEE-----TRVLRPGMAYT 90 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE--TTE-----EEEECTTEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3445778888775544556799999999999876 333 35789999873
No 89
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=48.58 E-value=51 Score=27.36 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=34.1
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 496 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
+....+.+|+.-.. ....++++|++|.+.+... +|+ ...+++||.+-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i~-~g~-----~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTTE-DGK-----KYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEET-TCC-----EEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEEC-CCC-----EEEECCCCEEE
Confidence 34557788876544 4568999999999998763 233 46799999874
No 90
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=48.48 E-value=38 Score=31.34 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=26.6
Q ss_pred CCCeEEEEEeeeEEEEEecCC---ceeeeeeeecCCCCeee
Q 005197 513 PVDEMLFIMRGKLLTITTNGG---RTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 513 ~~~~lyfI~~G~v~v~~~~~g---~~~~~~l~~l~~Gd~fG 550 (709)
+.++++++++|.+.+-..++| .+ +.-..+++||+|=
T Consensus 53 ~~eE~Fy~lkG~m~l~v~d~g~~~~~--~~dv~i~eGdmfl 91 (176)
T 1zvf_A 53 PTPEWFYQKKGSMLLKVVDETDAEPK--FIDIIINEGDSYL 91 (176)
T ss_dssp SSCEEEEEEESCEEEEEEECSSSSCE--EEEEEECTTEEEE
T ss_pred CCceEEEEEeCEEEEEEEcCCCcccc--eeeEEECCCCEEE
Confidence 456999999999998876655 11 1135899999984
No 91
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=47.89 E-value=32 Score=30.66 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=40.0
Q ss_pred EccCCCCCeEEEEEeeeEEEEEecC--CceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeC
Q 005197 508 VREGDPVDEMLFIMRGKLLTITTNG--GRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALM 585 (709)
Q Consensus 508 ~~eGd~~~~lyfI~~G~v~v~~~~~--g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~ 585 (709)
++.-+..|++++|++|.+.+...++ +.... ....+++|+++-- |+.. ..+-.|.++|.++.+.
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d-~~V~l~~Ge~yvV--------PkGv------eH~p~a~~e~~vLLiE 108 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNI-ELTLMEKGKVYNV--------PAEC------WFYSITQKDTKMMYVQ 108 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEE-EEEECCTTCCEEE--------CTTC------EEEEEECTTCEEEEEE
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCcc-ceEEecCCCEEEe--------CCCc------cCcccCCCceEEEEEE
Confidence 3444567899999999999876432 11001 1457899998842 2222 3355667777777665
Q ss_pred H
Q 005197 586 A 586 (709)
Q Consensus 586 ~ 586 (709)
.
T Consensus 109 p 109 (140)
T 3d0j_A 109 D 109 (140)
T ss_dssp E
T ss_pred e
Confidence 4
No 92
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=45.39 E-value=41 Score=32.36 Aligned_cols=68 Identities=12% Similarity=0.182 Sum_probs=47.5
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEE
Q 005197 496 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRA 575 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A 575 (709)
+....+++|+.+-..-.+.+++++|++|.+++.. +|+ ...+++||.+= +.+.. ...+.+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i--~g~-----~~~l~~Gd~i~-------ip~~~-------~H~~~~ 213 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV--DGK-----PFIVKKGESAV-------LPANI-------PHAVEA 213 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE--TTE-----EEEEETTEEEE-------ECTTS-------CEEEEC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE--CCE-----EEEECCCCEEE-------ECCCC-------cEEEEe
Confidence 4556889999886655667789999999999876 333 35789999873 22211 346777
Q ss_pred -eccceeeee
Q 005197 576 -LTEVEAFAL 584 (709)
Q Consensus 576 -~~~~~vl~L 584 (709)
.++++++.+
T Consensus 214 ~~~~~~~ll~ 223 (227)
T 3rns_A 214 ETENFKMLLI 223 (227)
T ss_dssp CSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 788776543
No 93
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=45.01 E-value=31 Score=28.39 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=33.4
Q ss_pred ceeeeCCCCEEEcc--CCC-CCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 497 KPVLYTEESYIVRE--GDP-VDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 497 ~~~~~~~ge~I~~e--Gd~-~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
....+.+|..+-.. -.. ..++++|++|.+.+... ++ ...+++||++=
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~~--~~-----~~~l~~Gd~~~ 73 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIVD--GH-----TQALQAGSLIA 73 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEET--TE-----EEEECTTEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEEE
Confidence 44567888876544 334 67999999999997762 33 35789999774
No 94
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=43.49 E-value=38 Score=27.26 Aligned_cols=47 Identities=9% Similarity=0.044 Sum_probs=32.4
Q ss_pred ceeeeCCCCEEEccCCC-CCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 497 KPVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 497 ~~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
....+.+|..+-..-.. .+++++|++|.+.+... ++ ...+++||++=
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVG--EE-----EALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEEC--CE-----EEEeCCCCEEE
Confidence 34467788876433334 35799999999987663 33 35789999873
No 95
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=43.14 E-value=49 Score=33.03 Aligned_cols=59 Identities=10% Similarity=0.253 Sum_probs=39.5
Q ss_pred CCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeCH
Q 005197 511 GDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMA 586 (709)
Q Consensus 511 Gd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~~ 586 (709)
-+..++++++++|.+.+-..++|+-+ -..+++|++|= + |... ..+=++-++|..+.|.+
T Consensus 48 ~~~~dE~FyqlkG~m~l~~~d~g~~~---~V~i~eGemfl-------l-P~gv------~HsP~r~~et~gLviE~ 106 (286)
T 2qnk_A 48 IEEGEEVFYQLEGDMVLRVLEQGKHR---DVVIRQGEIFL-------L-PARV------PHSPQRFANTVGLVVER 106 (286)
T ss_dssp ECSSCEEEEEEESCEEEEEEETTEEE---EEEECTTEEEE-------E-CTTC------CEEEEECTTCEEEEEEE
T ss_pred CCCCCeEEEEEeCeEEEEEEeCCcee---eEEECCCeEEE-------e-CCCC------CcCCcccCCeEEEEEee
Confidence 34578999999999998876656422 35799999983 2 2222 23445566777777664
No 96
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=41.01 E-value=27 Score=32.37 Aligned_cols=52 Identities=12% Similarity=0.206 Sum_probs=36.1
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 496 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
+....+.||......-..++++++|++|.+++...+.+... ...+++||++-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~---~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE---EEEECCCCEEE
Confidence 44557888887655433457999999999998764322221 46899999874
No 97
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=40.84 E-value=34 Score=29.05 Aligned_cols=49 Identities=16% Similarity=0.094 Sum_probs=33.2
Q ss_pred cceeeeCCCCEEEccCCCC-CeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 496 LKPVLYTEESYIVREGDPV-DEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~~-~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
+....+.||..+-..-... .++++|++|.+.+... +|+ ...+++||++-
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~-~~~-----~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG-NGI-----VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS-TTC-----EEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC-CCe-----EEEeCCCCEEE
Confidence 3445678888765444443 6899999999987652 333 35789999763
No 98
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=40.32 E-value=56 Score=29.51 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=24.6
Q ss_pred CCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 513 PVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 513 ~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
..+++++|++|.+++.. +|+ ...+++||.+=
T Consensus 83 ~~eE~~yVLeG~~~l~i--~g~-----~~~l~~GD~i~ 113 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII--DGR-----KVSASSGELIF 113 (151)
T ss_dssp SSEEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred CCcEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE
Confidence 45789999999999885 444 46799999874
No 99
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=38.05 E-value=98 Score=25.08 Aligned_cols=48 Identities=6% Similarity=0.066 Sum_probs=31.5
Q ss_pred ceeeeCCCCEEEccCCCC-CeE-EEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 497 KPVLYTEESYIVREGDPV-DEM-LFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 497 ~~~~~~~ge~I~~eGd~~-~~l-yfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
....+.+|..+-..-... .++ ++|++|.+.+...+ |+ ...+.+||++-
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~~~-~~-----~~~l~~Gd~~~ 85 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVGDG-DA-----VIPAPRGAVLV 85 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEECGG-GC-----EEEECTTEEEE
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEeCC-CE-----EEEECCCCEEE
Confidence 334677887764433332 466 89999999876632 23 35789999774
No 100
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=38.05 E-value=54 Score=26.35 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=34.1
Q ss_pred CCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEeccceeeeeC
Q 005197 514 VDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALM 585 (709)
Q Consensus 514 ~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~vl~L~ 585 (709)
..++++|++|.+.+... ++ ...+.+||++- ..+.. ...+.+.+++.++.++
T Consensus 50 ~~e~~~v~~G~~~~~~~--~~-----~~~l~~Gd~~~-------ip~~~-------~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAFR--DQ-----NITLQAGEMYV-------IPKGV-------EHKPMAKEECKIMIIE 100 (102)
T ss_dssp CCEEEEEEESEEEEECS--SC-----EEEEETTEEEE-------ECTTC-------CBEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEEC--CE-----EEEEcCCCEEE-------ECCCC-------eEeeEcCCCCEEEEEE
Confidence 37999999999987653 22 35788999763 22221 2355666788877764
No 101
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=37.91 E-value=33 Score=29.54 Aligned_cols=44 Identities=14% Similarity=0.269 Sum_probs=31.8
Q ss_pred eeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 500 LYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 500 ~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
...||..-.... ..++++.|++|.+.+... +|. ...+++||.+-
T Consensus 48 e~tPG~~~~~~~-~~~E~~~iLeG~~~lt~d-dG~-----~~~l~aGD~~~ 91 (116)
T 3es4_A 48 MAEPGIYNYAGR-DLEETFVVVEGEALYSQA-DAD-----PVKIGPGSIVS 91 (116)
T ss_dssp EECSEEEEECCC-SEEEEEEEEECCEEEEET-TCC-----CEEECTTEEEE
T ss_pred ecCCceeECeeC-CCcEEEEEEEeEEEEEeC-CCe-----EEEECCCCEEE
Confidence 566776655543 345999999999998764 344 35799999885
No 102
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=36.85 E-value=24 Score=30.72 Aligned_cols=44 Identities=20% Similarity=0.164 Sum_probs=31.0
Q ss_pred eeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 500 LYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 500 ~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
...+|..-.+..+ .+++++|++|.+.+... +|+ ...+++||.+-
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~~-~g~-----~~~l~~GD~~~ 98 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVDP-DGT-----VHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEECT-TCC-----EEEEETTCEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEEC-CCe-----EEEECCCCEEE
Confidence 4566666554332 27999999999998763 343 35799999885
No 103
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=36.79 E-value=32 Score=21.47 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=15.9
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 005197 615 WRSWAACFIQAAWRRYSKKK 634 (709)
Q Consensus 615 ~~~~~~~~iq~~~~~~~~r~ 634 (709)
-..+++..||.+|+++..+.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35688899999999988653
No 104
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=36.33 E-value=34 Score=22.10 Aligned_cols=20 Identities=30% Similarity=0.280 Sum_probs=16.2
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 005197 615 WRSWAACFIQAAWRRYSKKK 634 (709)
Q Consensus 615 ~~~~~~~~iq~~~~~~~~r~ 634 (709)
.+.+++..||.+|+++.-+.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr 23 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQR 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35688899999999998653
No 105
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=35.73 E-value=1.9e+02 Score=24.17 Aligned_cols=79 Identities=10% Similarity=0.090 Sum_probs=46.8
Q ss_pred eeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEe-
Q 005197 498 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRAL- 576 (709)
Q Consensus 498 ~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~- 576 (709)
...+.+|...-..-....++++|++|.+.+.. +|+ ...+++||++= ..+.. ...+.+.
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i--~~~-----~~~l~~Gd~~~-------i~~~~-------~H~~~~~~ 96 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI--NDE-----DFPVTKGDLII-------IPLDS-------EHHVINNN 96 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE--TTE-----EEEEETTCEEE-------ECTTC-------CEEEEECS
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE--CCE-----EEEECCCcEEE-------ECCCC-------cEEeEeCC
Confidence 34566666443333356689999999998876 333 35789999874 22221 2244443
Q ss_pred -ccce--eeeeCHHHHHHHHHHhH
Q 005197 577 -TEVE--AFALMADDLKFVASQFR 597 (709)
Q Consensus 577 -~~~~--vl~L~~~~f~~l~~~~p 597 (709)
++++ ++.++.+-+..++.+-+
T Consensus 97 ~~~~~~~~i~f~~~~~~~~~~~~~ 120 (128)
T 4i4a_A 97 QEDFHFYTIWWDKESTLNFLTRLE 120 (128)
T ss_dssp SSCEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCEEEEEEEECHHHHHHHHHhcc
Confidence 3333 45667777766665533
No 106
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=35.44 E-value=29 Score=28.68 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=39.6
Q ss_pred CCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEecccee
Q 005197 502 TEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEA 581 (709)
Q Consensus 502 ~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~v 581 (709)
.+|+......+...++++|++|.+.+...+ ++ ...+++||.+- ..+.. .....+.+++.+
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~~~~-~~-----~~~l~~Gd~~~-------ip~~~-------~H~~~~~~~~~~ 95 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVDFAD-GG-----SMTIREGEMAV-------VPKSV-------SHRPRSENGCSL 95 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEEETT-SC-----EEEECTTEEEE-------ECTTC-------CEEEEEEEEEEE
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEEECC-Cc-----EEEECCCCEEE-------ECCCC-------cEeeEeCCCeEE
Confidence 455433333333389999999999987643 13 46799999873 22221 224455567777
Q ss_pred eeeCHHH
Q 005197 582 FALMADD 588 (709)
Q Consensus 582 l~L~~~~ 588 (709)
+.+....
T Consensus 96 l~i~~~~ 102 (107)
T 2i45_A 96 VLIELSD 102 (107)
T ss_dssp EEEECC-
T ss_pred EEEECCC
Confidence 7766443
No 107
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=34.56 E-value=47 Score=30.87 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=32.4
Q ss_pred eeeCCCCEEE---ccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 499 VLYTEESYIV---REGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 499 ~~~~~ge~I~---~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
..+.||...- ....+..++++|++|.+++...++|... ...+++||.+-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~~~~~~---~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPK---EALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCE---EEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECCcCCcc---cEEECCCCEEE
Confidence 3566776543 1233457999999999998874422211 46899999874
No 108
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=33.90 E-value=56 Score=31.40 Aligned_cols=45 Identities=13% Similarity=0.050 Sum_probs=30.2
Q ss_pred eeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 500 LYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 500 ~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
.+.||...=.--.+.+++|+|++|.++....++ + ...+++||.+=
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~~g-~-----~~~l~pGd~v~ 182 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHLRNA-P-----DLMLEPGQTRF 182 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEETTS-C-----CEEECTTCEEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEECCC-C-----EEecCCCCEEE
Confidence 344444432223467899999999998876433 2 46789999874
No 109
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=33.90 E-value=48 Score=30.25 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=32.6
Q ss_pred ceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 497 KPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 497 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
....+.||..+-..-....++++|++|.+.+... |+ ...+++||++-
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 105 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVLD--DR-----VEPLTPLDCVY 105 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEEC--CE-----EEEECCCCEEE
Confidence 3446667766543334578999999999987753 33 35789999874
No 110
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=32.72 E-value=75 Score=29.84 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=35.2
Q ss_pred cceeeeCCCCEEEccCCC-CCeEEEEEeeeEEEEEecCC---ceeeeeeeecCCCCeee
Q 005197 496 LKPVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTNGG---RTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g---~~~~~~l~~l~~Gd~fG 550 (709)
+....+.+|...-.--.+ .+++++|++|.+++...+++ .+.. ...+++||++-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~--~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLY--SRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEE--EEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEE--EEEECCCCEEE
Confidence 445577888765433233 57999999999998764332 2211 35799999874
No 111
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=30.86 E-value=27 Score=28.43 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=31.6
Q ss_pred ceeeeCCCCEEEccCCCCC-eEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 497 KPVLYTEESYIVREGDPVD-EMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 497 ~~~~~~~ge~I~~eGd~~~-~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
....++||...-..-.+.. ++++|++|.+++...+ |.+ ...+.+||.+-
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~~-g~~----~~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPE-GSV----TSQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEETT-EEE----EEEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEeCC-CCE----EEEEcCCCEEE
Confidence 3446777775422222344 5999999999987643 212 45799999874
No 112
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=30.70 E-value=62 Score=28.74 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=35.2
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 496 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
+....++||..+-.-..+..+.++|++|..+. ..|.... -..+++||++=
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~---~~g~~~~--~~~~~~Gd~~~ 95 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV---RGGKAAG--GDTAIAPGYGY 95 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE---TTCGGGT--SEEEESSEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE---cCCCEec--ceEeCCCEEEE
Confidence 55678999998877666778889999999983 2232210 14678888774
No 113
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=29.59 E-value=48 Score=30.68 Aligned_cols=48 Identities=8% Similarity=0.058 Sum_probs=31.8
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCee
Q 005197 496 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 549 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~f 549 (709)
+....++||...-.--....+..+|++|.+++...+ |+ ...+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld~-ge-----~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELDD-GA-----KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECGG-GC-----EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEECC-Ce-----EEEECCCCEE
Confidence 344567777643322233457889999999987642 33 3579999998
No 114
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=29.34 E-value=50 Score=27.60 Aligned_cols=45 Identities=9% Similarity=0.152 Sum_probs=29.2
Q ss_pred eeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeee-ecCCCCeee
Q 005197 499 VLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSE-YLGAGDFCG 550 (709)
Q Consensus 499 ~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~-~l~~Gd~fG 550 (709)
..+.+|...-.--....++++|++|.+.+... ++ .. .+.+||++=
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTLE--DQ-----EPHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEET--TS-----CCEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEEC--CE-----EEEEeCCCCEEE
Confidence 34556655422223456899999999988763 33 24 788999773
No 115
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=29.29 E-value=51 Score=29.61 Aligned_cols=51 Identities=6% Similarity=-0.048 Sum_probs=32.6
Q ss_pred ceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCc-----eeeeeeeecCCCCeee
Q 005197 497 KPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGR-----TGFFNSEYLGAGDFCG 550 (709)
Q Consensus 497 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~-----~~~~~l~~l~~Gd~fG 550 (709)
....+.+|..+-..-....++++|++|.+.+...+.++ .. ...+.+||++=
T Consensus 44 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~---~~~l~~Gd~i~ 99 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQ---EIPFFQNTTFS 99 (163)
T ss_dssp EEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCE---EEEECTTEEEE
T ss_pred EEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccE---EEEeCCCCEEE
Confidence 34456777654222224568999999999988754221 01 45789999874
No 116
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=29.15 E-value=73 Score=29.94 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=35.8
Q ss_pred hcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 495 RLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 495 ~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
.+....+.||..+-.-.....++.+|++|.++ ++ ...+.+||++=
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de-------~~~~~~Gd~~~ 170 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DE-------TDRFGAGDIEI 170 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CS-------SSEEETTCEEE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CC-------cEEECCCeEEE
Confidence 45677899999998888889999999999965 22 24688999863
No 117
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=27.84 E-value=46 Score=30.44 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=31.1
Q ss_pred eeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 499 VLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 499 ~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
..+.||..+-..-....++++|++|.+++.. +|+ ...+++||++=
T Consensus 58 ~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v--~g~-----~~~l~~GD~i~ 102 (166)
T 3jzv_A 58 FEVGPGGHSTLERHQHAHGVMILKGRGHAMV--GRA-----VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEECCCBBCSSCEEEEEEEECEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 3556666554333456789999999999765 333 46789999874
No 118
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=27.81 E-value=57 Score=27.86 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=30.9
Q ss_pred eeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 498 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 498 ~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
...+.||...-.--....++++|++|.+++... ++ ...+.+||++=
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLKE--QG-----EETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEECS--SC-----EEEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEEC--CE-----EEEECCCCEEE
Confidence 345566665533333467999999999987653 33 35788998773
No 119
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=27.72 E-value=82 Score=27.83 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=32.2
Q ss_pred ceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 497 KPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 497 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
....+.+|..+-..-....++++|++|.+.+... +++ ...+.+||++-
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~--~~~----~~~l~~Gd~i~ 98 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQER--GKP----ARILKKGDVVE 98 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEET--TSC----CEEEETTCEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEEC--CEE----EEEECCCCEEE
Confidence 3446677776633333457999999999998763 221 15788999874
No 120
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=27.43 E-value=45 Score=30.12 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=30.3
Q ss_pred eeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 500 LYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 500 ~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
.+.||..+-..-....++++|++|.+++.. +|+ ...+.+||++=
T Consensus 50 ~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v--~g~-----~~~l~~Gd~i~ 93 (156)
T 3kgz_A 50 EVDEGGYSTLERHAHVHAVMIHRGHGQCLV--GET-----ISDVAQGDLVF 93 (156)
T ss_dssp EEEEEEECCCBBCSSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EECCCCccCceeCCCcEEEEEEeCEEEEEE--CCE-----EEEeCCCCEEE
Confidence 456666553333456789999999999875 333 45788998773
No 121
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=27.25 E-value=85 Score=28.92 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=31.4
Q ss_pred eeeCCCCEEEc--cCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 499 VLYTEESYIVR--EGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 499 ~~~~~ge~I~~--eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
..++||...-. -.....++++|++|.+.+.. +|+ ...+.+||.+=
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~GD~i~ 155 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF--DEQ-----WHELQQGEHIR 155 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE--TTE-----EEEECTTCEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE--CCE-----EEEeCCCCEEE
Confidence 46677776542 22334699999999999776 333 45899999874
No 122
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=27.09 E-value=52 Score=29.85 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=31.4
Q ss_pred ceeeeCCCCEEE--ccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 497 KPVLYTEESYIV--REGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 497 ~~~~~~~ge~I~--~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
....+.+|.... +..+..+++++|++|.+++... ++ ...+++||.+-
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~~--~~-----~~~l~~GD~i~ 94 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDD--QG-----EHPMVPGDCAA 94 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEET--TE-----EEEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEEC--CE-----EEEeCCCCEEE
Confidence 345667777542 2222336999999999998763 33 35789999874
No 123
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=26.96 E-value=60 Score=27.22 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=24.7
Q ss_pred CCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 512 DPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 512 d~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
...+++++|++|.+++...++.. ...+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~~~~~-----~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECEGDTA-----PRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEETTCSS-----CEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEECCEEE-----EEEECCCCEEE
Confidence 35669999999999987743210 14789999874
No 124
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=26.48 E-value=51 Score=29.55 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=31.2
Q ss_pred ceeeeCCCCE-E-EccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCee
Q 005197 497 KPVLYTEESY-I-VREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 549 (709)
Q Consensus 497 ~~~~~~~ge~-I-~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~f 549 (709)
....+.||.. . .+.-...+++++|++|.+.+.. +|+ ...+++||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM--END-----QYPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE--TTE-----EEEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE--CCE-----EEEeCCCCEE
Confidence 3456777763 2 2222246799999999999875 333 3578999987
No 125
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=25.94 E-value=1.5e+02 Score=25.77 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=30.8
Q ss_pred eeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 498 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 498 ~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
...+.||..-.. ...+++++|++|.+.+... |+ ...+++||.+-
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~~--g~-----~~~l~~GD~i~ 104 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRHE--GE-----TMIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEET--TE-----EEEEETTCEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEEC--CE-----EEEECCCcEEE
Confidence 345677743222 2367999999999998763 44 35799999885
No 126
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=25.86 E-value=91 Score=32.06 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=35.0
Q ss_pred ceeeeCCCCEEEccCCC-CCeEEEEEeeeEEEEEec-CCceeeeeeeecCCCCeee
Q 005197 497 KPVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTN-GGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 497 ~~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~-~g~~~~~~l~~l~~Gd~fG 550 (709)
....+.||...-..-.. .+++++|++|.+++...+ +|+.. ...+++||++-
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~---~~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVE---IADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEE---EEEEcCCCEEE
Confidence 34567788865433234 789999999999987744 34322 35799999874
No 127
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=25.55 E-value=62 Score=28.01 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=31.5
Q ss_pred eeeeCCCCEEEccCCC-CCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 498 PVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 498 ~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
...++||..+-.--.. ..++++|++|.+.+... ++ ...+.+||++=
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~--~~-----~~~l~~Gd~i~ 107 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHDN--GK-----DVPIKAGDVCF 107 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEET--TE-----EEEEETTEEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEEC--CE-----EEEeCCCcEEE
Confidence 4467888765332223 36899999999987653 33 35789999873
No 128
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=24.51 E-value=90 Score=32.50 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=35.9
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEec-CCceeeeeeeecCCCCeee
Q 005197 496 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTN-GGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~-~g~~~~~~l~~l~~Gd~fG 550 (709)
+....+.+|..+-..-.+..++.+|++|.+++...+ +|+.. ...+++||++=
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~---~~~l~~GD~~~ 133 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSF---IDDVGEGDLWY 133 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEE---EEEEETTEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEE---EEEeCCCCEEE
Confidence 344567888866433334789999999999988754 45432 24789999873
No 129
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=24.37 E-value=28 Score=28.71 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=31.8
Q ss_pred ceeeeCCCCEEEccCCCCC-eEEEEEeeeEEEEEecCCceeeeeeeecCCCCee
Q 005197 497 KPVLYTEESYIVREGDPVD-EMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 549 (709)
Q Consensus 497 ~~~~~~~ge~I~~eGd~~~-~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~f 549 (709)
....++||+.+=..-.+.+ ..|+|.+|.+++...++... ...+.+|+.+
T Consensus 20 ~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~----~~~l~~G~~~ 69 (98)
T 3lag_A 20 TEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRS----LAQLKTGRSY 69 (98)
T ss_dssp EEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEE----CCCBCTTCCE
T ss_pred EEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceE----EEEecCCcEE
Confidence 4457888888755544444 68888899998876443322 3467888765
No 130
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=24.29 E-value=65 Score=34.33 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=38.2
Q ss_pred hcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 495 RLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 495 ~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
.+....+.||..+..--...+++++|++|.+.+...+.+... ...+++||++-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 102 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD---SYNLHPGDAQR 102 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE---EEEECTTEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe---EEEecCCCEEE
Confidence 355668899987766655677999999999997663333222 46799999874
No 131
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=24.03 E-value=2.4e+02 Score=27.22 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=32.1
Q ss_pred eeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 498 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 498 ~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
...++||...-..- .+++.+|++|.+++.. +|+ ...+++||.+-
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~~~ 97 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV--GGE-----TRTLREYDYVY 97 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC--SSC-----EEEECTTEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE--CCE-----EEEECCCCEEE
Confidence 44677887655442 6789999999999876 333 35799999875
No 132
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=23.75 E-value=1.2e+02 Score=31.00 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=35.9
Q ss_pred cceeeeCCCCEEEccCCCC-CeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCeee
Q 005197 496 LKPVLYTEESYIVREGDPV-DEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~~-~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~fG 550 (709)
+....+.||..+-..-.+. +++++|++|.+++... .+|+. . ...+++||++-
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~-~--~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKA-S--VSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCE-E--EEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcE-E--EEEECCCCEEE
Confidence 4455788888764433344 8999999999998763 34431 1 35799999884
No 133
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=23.01 E-value=82 Score=30.64 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=36.3
Q ss_pred hcceeeeCCCCEEEc-cCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 495 RLKPVLYTEESYIVR-EGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 495 ~l~~~~~~~ge~I~~-eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
.+....++||..+=. +-....+.++|++|++.+.. +|+ ...+++||++-
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~--~~~-----~~~l~~GD~~~ 215 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL--EEN-----YYPVTAGDIIW 215 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE--TTE-----EEEEETTCEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE--CCE-----EEEcCCCCEEE
Confidence 345668889987753 44556799999999998765 344 45899999875
No 134
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=22.33 E-value=1.1e+02 Score=33.13 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=37.3
Q ss_pred hcceeeeCCCCEEEccCCC-CCeEEEEEeeeEEEEEec-CCceeeeeeeecCCCCeee
Q 005197 495 RLKPVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTN-GGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 495 ~l~~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~-~g~~~~~~l~~l~~Gd~fG 550 (709)
.+....+.||..+-.-=.+ ++++++|++|.+++...+ +|...+ ...+++||++=
T Consensus 339 s~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~--~~~l~~GDv~v 394 (476)
T 1fxz_A 339 SAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVF--DGELQEGRVLI 394 (476)
T ss_dssp CEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred eEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEe--eeEEcCCCEEE
Confidence 4556688888866433334 689999999999987643 444322 35699999873
No 135
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=21.73 E-value=74 Score=34.08 Aligned_cols=53 Identities=15% Similarity=0.173 Sum_probs=38.8
Q ss_pred hcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 495 RLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 495 ~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
.+....+.||..+..--..++++++|++|...+...+.+... ...+++||++-
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 114 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD---SYILEQGHAQK 114 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE---EEEEETTEEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE---EEEeCCCCEEE
Confidence 455678899988876655577999999999997764333221 46799999874
No 136
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=21.63 E-value=64 Score=34.08 Aligned_cols=48 Identities=21% Similarity=0.174 Sum_probs=34.5
Q ss_pred ceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 497 KPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 497 ~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
....+.||+.+-..-....++|||++|.-..... +|+ ...+++||++=
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v-~G~-----~~~~~~GD~i~ 173 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTIV-DGH-----KVELGANDFVL 173 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEEE-TTE-----EEEECTTCEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEEE-CCE-----EEEEcCCCEEE
Confidence 5567888888755555667899999998754333 444 35789999884
No 137
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=21.63 E-value=92 Score=30.15 Aligned_cols=47 Identities=9% Similarity=0.101 Sum_probs=34.9
Q ss_pred cceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCee
Q 005197 496 LKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 549 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~f 549 (709)
+....+.+|..+-.--.+..++++|++|.+++.. +|+ ...+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~--~~~-----~~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV--GDV-----TRKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE--TTE-----EEEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE--CCE-----EEEECCCCEE
Confidence 4445688998876555567799999999999876 333 4578999844
No 138
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=21.55 E-value=1.3e+02 Score=32.73 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=40.2
Q ss_pred HHHHHhhcceeeeCCCCEEEccCCC-CCeEEEEEeeeEEEEEec-CCceeeeeeeecCCCCeee
Q 005197 489 LDALCDRLKPVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTN-GGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 489 l~~L~~~l~~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~-~g~~~~~~l~~l~~Gd~fG 550 (709)
+..+--.+....+.||..+-.-=.+ ++++++|++|.+++...+ +|+..+ ...+++||++=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~--~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVF--DGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEE--eEEEcCCCEEE
Confidence 3344445666788898865443333 689999999999987643 344322 25699999884
No 139
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=21.44 E-value=1.2e+02 Score=33.24 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=39.7
Q ss_pred HHHHhhcceeeeCCCCEEEccCCC-CCeEEEEEeeeEEEEEec-CCceeeeeeeecCCCCeee
Q 005197 490 DALCDRLKPVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTN-GGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 490 ~~L~~~l~~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~-~g~~~~~~l~~l~~Gd~fG 550 (709)
..+--.+....+.||..+-.-=.+ ++++++|++|.+++...+ +|...+ ...+++||++=
T Consensus 368 ~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~--~~~l~~GDv~v 428 (510)
T 3c3v_A 368 RWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVY--DEELQEGHVLV 428 (510)
T ss_dssp HHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEE--EEEEETTCEEE
T ss_pred ccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEE--eEEEcCCcEEE
Confidence 334445666788899866433333 689999999999987643 444322 35699999873
No 140
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=21.07 E-value=1.7e+02 Score=30.28 Aligned_cols=71 Identities=10% Similarity=0.045 Sum_probs=46.4
Q ss_pred eeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeeehhhhhhhcCCCCCCCCCCcceEEEEec
Q 005197 498 PVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALT 577 (709)
Q Consensus 498 ~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~ 577 (709)
...+++|..--.--.+..++|+|++|..++.. +|+ ...+++||+|---.. . ...+.+.+
T Consensus 272 ~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v--~~~-----~~~~~~GD~~~vP~~--------~------~H~~~n~e 330 (354)
T 2d40_A 272 LQLLPKGFASRVARTTDSTIYHVVEGSGQVII--GNE-----TFSFSAKDIFVVPTW--------H------GVSFQTTQ 330 (354)
T ss_dssp EEEECTTCBCCCBEESSCEEEEEEEEEEEEEE--TTE-----EEEEETTCEEEECTT--------C------CEEEEEEE
T ss_pred EEEECCCCCCCceecCCcEEEEEEeCeEEEEE--CCE-----EEEEcCCCEEEECCC--------C------eEEEEeCC
Confidence 44666666554333456689999999998776 343 468999999753221 1 33556668
Q ss_pred cceeeeeCHHHH
Q 005197 578 EVEAFALMADDL 589 (709)
Q Consensus 578 ~~~vl~L~~~~f 589 (709)
++.++++.-.-+
T Consensus 331 ~~~l~~~~d~p~ 342 (354)
T 2d40_A 331 DSVLFSFSDRPV 342 (354)
T ss_dssp EEEEEEEESHHH
T ss_pred CEEEEEEcCHHH
Confidence 888888855443
No 141
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=21.03 E-value=1.2e+02 Score=26.63 Aligned_cols=51 Identities=18% Similarity=0.051 Sum_probs=30.8
Q ss_pred eeeeCCCCEEEccCCC-CCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCee
Q 005197 498 PVLYTEESYIVREGDP-VDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFC 549 (709)
Q Consensus 498 ~~~~~~ge~I~~eGd~-~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~f 549 (709)
...+.||..+-..-.. .+++++|++|.+.+...+....... ...+.+||++
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~-~~~l~~Gd~i 98 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHF-QEEVFDDYAI 98 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCE-EEEEETTCEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCcccccee-eEEECCCCEE
Confidence 3466777655322223 4589999999999876433210000 1578899876
No 142
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=20.97 E-value=80 Score=33.93 Aligned_cols=53 Identities=13% Similarity=0.231 Sum_probs=37.9
Q ss_pred hcceeeeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 495 RLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 495 ~l~~~~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
.+....++||..+...-..++++++|++|.+.+...+.+... ...+++||++-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~---~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD---TYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE---EEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE---EEEecCCCEEE
Confidence 345568889987766545577999999999987663333221 56899999875
No 143
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=20.94 E-value=74 Score=27.51 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=27.9
Q ss_pred eeCCCCEEEccCCCCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 500 LYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 500 ~~~~ge~I~~eGd~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
.+.||..+-.--....++.+|++|.+.+....+|+ ...+++||++-
T Consensus 45 ~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~-----~~~l~~Gd~~~ 90 (145)
T 3ht1_A 45 EVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQGR-----TEEVGPGEAIF 90 (145)
T ss_dssp EEEEEEECCCEECSSCEEEEEEEECEEEEEGGGTE-----EEEECTTCEEE
T ss_pred EECCCCcCCCccCCCceEEEEEEeEEEEEEeECCE-----EEEECCCCEEE
Confidence 44455443222223456778999999987323343 46789999763
No 144
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=20.57 E-value=59 Score=29.88 Aligned_cols=31 Identities=6% Similarity=-0.045 Sum_probs=24.4
Q ss_pred CCCeEEEEEeeeEEEEEecCCceeeeeeeecCCCCeee
Q 005197 513 PVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 513 ~~~~lyfI~~G~v~v~~~~~g~~~~~~l~~l~~Gd~fG 550 (709)
...+++||++|.+++.. +|+ ...+.+||.+-
T Consensus 109 ~gEE~~yVLeG~v~vtl--~g~-----~~~L~~Gds~~ 139 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTV--CKN-----KFLSVKGSTFQ 139 (166)
T ss_dssp SEEEEEEEEESEEEEEE--TTE-----EEEEETTCEEE
T ss_pred CceEEEEEEEeEEEEEE--CCE-----EEEEcCCCEEE
Confidence 45689999999999877 333 45799999874
No 145
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=20.25 E-value=1.3e+02 Score=31.34 Aligned_cols=52 Identities=17% Similarity=0.087 Sum_probs=35.9
Q ss_pred cceeeeCCCCEEEccCCCC-CeEEEEEeeeEEEEEe-cCCceeeeeeeecCCCCeee
Q 005197 496 LKPVLYTEESYIVREGDPV-DEMLFIMRGKLLTITT-NGGRTGFFNSEYLGAGDFCG 550 (709)
Q Consensus 496 l~~~~~~~ge~I~~eGd~~-~~lyfI~~G~v~v~~~-~~g~~~~~~l~~l~~Gd~fG 550 (709)
+....+.||...-..-.+. +++++|++|.+++... .+|+.. ...+++||++-
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~---~~~l~~GD~~~ 312 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHAR---TFNYQAGDVGY 312 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEE---EEEEESSCEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEE---EEEEcCCCEEE
Confidence 3445778888764433444 8999999999997763 344322 35789999874
Done!