BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005199
(709 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 202 bits (513), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 93/122 (76%), Positives = 112/122 (91%)
Query: 477 RVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTG 536
RVPLFE MDE+LLDA+C+RLKP L+TE+SY+VREGDPV+EMLFI+RG+L ++TT+GGR+G
Sbjct: 10 RVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSG 69
Query: 537 FFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVASQF 596
F+N L GDFCG+ELLTWALDP+S SNLP STRTV+ALTEVEAFAL+AD+LKFVASQF
Sbjct: 70 FYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQF 129
Query: 597 RR 598
RR
Sbjct: 130 RR 131
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 18/184 (9%)
Query: 414 KRRDAEQWMA-HRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCL 472
K + EQ+M+ H+L PDT R+RI Y ++++Q + DEE++L L + LR +I C
Sbjct: 11 KYKQVEQYMSFHKLPPDT-RQRIHDYYEHRYQ-GKMFDEESILGELSEPLREEIINFNCR 68
Query: 473 ALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNG 532
L+ +PLF D + ++ +L+ ++ YI+REG +M FI G + +T
Sbjct: 69 KLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN 128
Query: 533 GRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFV 592
T + Y G+ C LLT T +VRA T ++L D+ V
Sbjct: 129 KETKLADGSYF--GEIC---LLTRGR----------RTASVRADTYCRLYSLSVDNFNEV 173
Query: 593 ASQF 596
++
Sbjct: 174 LEEY 177
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 16/183 (8%)
Query: 414 KRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLA 473
K + EQ+M+ LP +R++I Y ++++Q + DEEN+L L LR +I C
Sbjct: 17 KYKQVEQYMSFHKLPADMRQKIHDYYEHRYQ-GKIFDEENILSELNDPLREEIVNFNCRK 75
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGG 533
L+ +PLF D + A+ +L+ ++ YI+REG +M FI G IT +
Sbjct: 76 LVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVITKSSK 135
Query: 534 RTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVA 593
+ Y G+ C LLT T +VRA T ++L D+ V
Sbjct: 136 EMKLTDGSYF--GEIC---LLTKGR----------RTASVRADTYCRLYSLSVDNFNEVL 180
Query: 594 SQF 596
++
Sbjct: 181 EEY 183
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 18/184 (9%)
Query: 414 KRRDAEQWMA-HRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCL 472
K + EQ+M+ H+L PDT R+RI Y ++++Q + DEE++L L + LR +I C
Sbjct: 11 KYKQVEQYMSFHKLPPDT-RQRIHDYYEHRYQ-GKMFDEESILGELSEPLREEIINFNCR 68
Query: 473 ALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNG 532
L+ +PLF D + ++ +L+ ++ YI+REG +M FI G + +T
Sbjct: 69 KLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN 128
Query: 533 GRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFV 592
T + Y G+ C LLT T VRA T ++L D+ V
Sbjct: 129 KETKLADGSYF--GEIC---LLTRGR----------RTARVRADTYCRLYSLSVDNFNEV 173
Query: 593 ASQF 596
++
Sbjct: 174 LEEY 177
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 16/183 (8%)
Query: 414 KRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLA 473
K + EQ+M+ LP R++I Y ++++Q + DE+++L L LR +I C
Sbjct: 17 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNCRK 75
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGG 533
L+ +PLF D + A+ +LK ++ YI+REG +M FI G + +T
Sbjct: 76 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK 135
Query: 534 RTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVA 593
+ Y G+ C LLT T +VRA T ++L D+ V
Sbjct: 136 EMKLSDGSYF--GEIC---LLTRGR----------RTASVRADTYCRLYSLSVDNFNEVL 180
Query: 594 SQF 596
++
Sbjct: 181 EEY 183
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 16/183 (8%)
Query: 414 KRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLA 473
K + EQ+M+ LP R++I Y ++++Q + DE+++L L LR +I C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNCRK 72
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGG 533
L+ +PLF D + A+ +LK ++ YI+REG +M FI G + +T
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK 132
Query: 534 RTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVA 593
+ Y G+ C LLT T +VRA T ++L D+ V
Sbjct: 133 EMKLSDGSYF--GEIC---LLTRGR----------RTASVRADTYCRLYSLSVDNFNEVL 177
Query: 594 SQF 596
++
Sbjct: 178 EEY 180
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 16/183 (8%)
Query: 414 KRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLA 473
K + EQ+M+ LP R++I Y ++++Q + DE+++L L LR +I C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNCRK 72
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGG 533
L+ +PLF D + A+ +LK ++ YI+REG +M FI G + +T
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK 132
Query: 534 RTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVA 593
+ Y G+ C LLT T +VRA T ++L D+ V
Sbjct: 133 EMKLSDGSYF--GEIC---LLTRGR----------RTASVRADTYCRLYSLSVDNFNEVL 177
Query: 594 SQF 596
++
Sbjct: 178 EEY 180
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 16/183 (8%)
Query: 414 KRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLA 473
K + EQ+M+ LP R++I Y ++++Q + DE+++L L LR +I C
Sbjct: 12 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNCRK 70
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGG 533
L+ +PLF D + A+ +LK ++ YI+REG +M FI G + +T
Sbjct: 71 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK 130
Query: 534 RTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVA 593
+ Y G+ C LLT T +VRA T ++L D+ V
Sbjct: 131 EMKLSDGSYF--GEIC---LLTRGR----------RTASVRADTYCRLYSLSVDNFNEVL 175
Query: 594 SQF 596
++
Sbjct: 176 EEY 178
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 18/184 (9%)
Query: 414 KRRDAEQWMA-HRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCL 472
K + EQ+M+ H+L PDT R+RI Y ++++Q + DEE++L L + LR +I
Sbjct: 17 KYKQVEQYMSFHKLPPDT-RQRIHDYYEHRYQ-GKMFDEESILGELSEPLREEIINFNXR 74
Query: 473 ALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNG 532
L+ +PLF D + ++ +L+ ++ YI+REG +M FI G + +T
Sbjct: 75 KLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN 134
Query: 533 GRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFV 592
T + Y G+ C LLT T +VRA T ++L D+ V
Sbjct: 135 KETKLADGSYF--GEIC---LLTRGR----------RTASVRADTYCRLYSLSVDNFNEV 179
Query: 593 ASQF 596
++
Sbjct: 180 LEEY 183
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 16/183 (8%)
Query: 414 KRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLA 473
K + EQ+M+ LP R++I Y ++++Q + DE+++L L LR I C
Sbjct: 14 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRK 72
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGG 533
L+ +PLF D + A+ +LK ++ YI+REG +M FI G + +T
Sbjct: 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK 132
Query: 534 RTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVA 593
+ Y G+ C LLT T +VRA T ++L D+ V
Sbjct: 133 EMKLSDGSYF--GEIC---LLTRGR----------RTASVRADTYCRLYSLSVDNFNEVL 177
Query: 594 SQF 596
++
Sbjct: 178 EEY 180
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 18/184 (9%)
Query: 414 KRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLA 473
K + EQ+M+ LP R++I Y ++++Q + DE+++L L LR +I
Sbjct: 16 KYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNNRK 74
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGG 533
L+ +PLF D + A+ +LK ++ YI+REG +M FI G ++++ T G
Sbjct: 75 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG-VVSVLTKGN 133
Query: 534 RTGFFNSEYLGAGDFCGE-ELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFV 592
+ L G + GE LLT T +VRA T ++L D+ V
Sbjct: 134 K-----EMKLSDGSYFGEISLLTRGR----------RTASVRADTYSRLYSLSVDNFNEV 178
Query: 593 ASQF 596
++
Sbjct: 179 LEEY 182
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 16/183 (8%)
Query: 414 KRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRHLCLA 473
K + EQ+ + LP R++I Y ++++Q + DE+++L L LR +I C
Sbjct: 14 KYKQVEQYXSFHKLPADFRQKIHDYYEHRYQ-GKXFDEDSILGELNGPLREEIVNFNCRK 72
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGG 533
L+ PLF D + A +LK ++ YI+REG + FI G + +T
Sbjct: 73 LVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGVVSVLTKGNK 132
Query: 534 RTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVA 593
+ Y G+ C LLT T +VRA T ++L D+ V
Sbjct: 133 EXKLSDGSYF--GEIC---LLTRGR----------RTASVRADTYCRLYSLSVDNFNEVL 177
Query: 594 SQF 596
++
Sbjct: 178 EEY 180
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Query: 410 EMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKDLRRDIKRH 469
+ R K + E++M +R LP LR +I Y +Y+++ + DE ++ + + +R+D+ +
Sbjct: 9 QYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANY 67
Query: 470 LCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTIT 529
C L+ VP F D + + L+ ++ Y+++EG D M FI +G + I
Sbjct: 68 NCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM 127
Query: 530 TNG 532
++G
Sbjct: 128 SDG 130
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 29/219 (13%)
Query: 402 QSTTTRLEEMRVKRRDAEQWMAHRLLPDTLRERIRRYEQYKWQETRGVDEENLLCNLPKD 461
Q +R + +D + ++ LP L +R+ Q W G+D LL + P +
Sbjct: 5 QRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDE 64
Query: 462 LRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIM 521
LR DI HL LL ++PLFE L +L +K +++R+GD + + F+
Sbjct: 65 LRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVC 123
Query: 522 RGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEA 581
G + + N LG GD G + LT ++++N V+ALT
Sbjct: 124 SGSMEVLKDNTVLA------ILGKGDLIGSDSLTKEQVIKTNAN-------VKALTYC-- 168
Query: 582 FALMADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAA 620
DL++++ K LR R Y + + + +
Sbjct: 169 ------DLQYIS-------LKGLREVLRLYPEYAQKFVS 194
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 22/147 (14%)
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGG 533
L+ VPLF+K+ +L + L+ + I R G+P D M F++ G + T
Sbjct: 229 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 285
Query: 534 RTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVA 593
N LG G F GE L +P+S+ TV A T V +L + D + +
Sbjct: 286 -----NPVELGPGAFFGEMALISG-EPRSA--------TVSAATTVSLLSLHSADFQMLC 331
Query: 594 SQFRRLHSKQLRHTFRFYSQQWRSWAA 620
S S ++ FR + + R AA
Sbjct: 332 S-----SSPEIAEIFRKTALERRGAAA 353
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGG 533
L+ VPLF+K+ +L + L+ + I R G+P D M F++ G + T
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 70
Query: 534 RTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVA 593
N LG G F GE L + +P+S+ TV A T V +L + D + +
Sbjct: 71 -----NPVELGPGAFFGEMALI-SGEPESA--------TVSAATTVSLLSLHSADFQMLC 116
Query: 594 SQFRRLHSKQLRHTFRFYSQQWRSWAA 620
S S ++ FR + + R AA
Sbjct: 117 SS-----SPEIAEIFRKTALERRGAAA 138
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGG 533
L+ VPLF+K+ +L + L+ + I R G+P D M F++ G + T
Sbjct: 12 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 68
Query: 534 RTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVA 593
N LG G F GE L + +P+S+ TV A T V +L + D + +
Sbjct: 69 -----NPVELGPGAFFGEMALI-SGEPRSA--------TVSAATTVSLLSLHSADFQMLC 114
Query: 594 SQFRRLHSKQLRHTFRFYSQQWRSWAA 620
S S ++ FR + + R AA
Sbjct: 115 SS-----SPEIAEIFRKTALEARGAAA 136
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGG 533
L+ VPLF+K+ +L + L+ + I R G+P D M F++ G + T
Sbjct: 16 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 72
Query: 534 RTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVA 593
N LG G F GE L + +P+S+ TV A T V +L + D + +
Sbjct: 73 -----NPVELGPGAFFGEMALI-SGEPRSA--------TVSAATTVSLLSLHSADFQMLC 118
Query: 594 SQFRRLHSKQLRHTFRFYSQQWRSWAA 620
S S ++ FR + + R AA
Sbjct: 119 SS-----SPEIAEIFRKTALERRGAAA 140
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGG 533
L+ VPLF+K+ +L + L+ + I R G+P D M F++ G + T
Sbjct: 12 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 68
Query: 534 RTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVA 593
N LG G F GE L + +P+S+ TV A T V +L + D + +
Sbjct: 69 -----NPVELGPGAFFGEMALI-SGEPRSA--------TVSAATTVSLLSLHSADFQMLC 114
Query: 594 SQFRRLHSKQLRHTFRFYSQQWRSWAA 620
S S ++ FR + + R AA
Sbjct: 115 SS-----SPEIAEIFRKTALERRGAAA 136
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGG 533
L+ VPLF+K+ +L + L+ + I R G+P D M F++ G + T
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 70
Query: 534 RTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVA 593
N LG G F GE L + +P+S+ TV A T V +L + D + +
Sbjct: 71 -----NPVELGPGAFFGEMALI-SGEPRSA--------TVSAATTVSLLSLHSADFQMLC 116
Query: 594 SQFRRLHSKQLRHTFRFYSQQWRSWAA 620
S S ++ FR + + R AA
Sbjct: 117 SS-----SPEIAEIFRKTALERRGAAA 138
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 56/141 (39%), Gaps = 13/141 (9%)
Query: 452 ENLLCNLPKDLRRDIKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREG 511
E +L PKD+R DI HL + P F + L AL + V I G
Sbjct: 6 EKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAG 65
Query: 512 DPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTR 571
+ VD + F++ G L I + LG GD G+ A QS +N
Sbjct: 66 ESVDSLCFVVSGSLEVIQDDE------VVAILGKGDVFGDVFWKEATLAQSCAN------ 113
Query: 572 TVRALTEVEAFALMADDLKFV 592
VRALT + + D L+ V
Sbjct: 114 -VRALTYCDLHVIKRDALQKV 133
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 22/147 (14%)
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGG 533
L+ VPLF+K+ +L + L+ + I R G+P D M F++ G + T
Sbjct: 14 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--- 70
Query: 534 RTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLKFVA 593
N LG G F GE L + +P S+ TV A T V +L + D + +
Sbjct: 71 -----NPVELGPGAFFGEMALI-SGEPWSA--------TVSAATTVSLLSLHSADFQMLC 116
Query: 594 SQFRRLHSKQLRHTFRFYSQQWRSWAA 620
S S ++ FR + + R AA
Sbjct: 117 SS-----SPEIAEIFRKTALERRGAAA 138
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 467 KRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLL 526
KR + L +V + E +D+ + D L+PV + + IV +G+P DE I+ G
Sbjct: 149 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 208
Query: 527 TITTNGGRTGFFNSEYLGAGDFCGE 551
+ F LG D+ GE
Sbjct: 209 VLQRRSENEEFVEVGRLGPSDYFGE 233
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 467 KRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLL 526
KR + L +V + E +D+ + D L+PV + + IV +G+P DE I+ G
Sbjct: 147 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 206
Query: 527 TITTNGGRTGFFNSEYLGAGDFCGE 551
+ F LG D+ GE
Sbjct: 207 VLQRRSENEEFVEVGRLGPSDYFGE 231
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 467 KRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLL 526
KR + L +V + E +D+ + D L+PV + + IV +G+P DE I+ G
Sbjct: 151 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 210
Query: 527 TITTNGGRTGFFNSEYLGAGDFCGE 551
+ F LG D+ GE
Sbjct: 211 VLQRRSENEEFVEVGRLGPSDYFGE 235
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%)
Query: 466 IKRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKL 525
IK + L VP F+ + E++L L D L+ Y YI+R+G D I +GK+
Sbjct: 150 IKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKV 209
Query: 526 LTITTNGGRTGFFNSEYLGAGDFCGEELL 554
+ LG GD+ GE+ L
Sbjct: 210 NVTREDSPNEDPVFLRTLGKGDWFGEKAL 238
>pdb|2PQQ|A Chain A, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|B Chain B, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|C Chain C, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|D Chain D, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
Length = 149
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 19/142 (13%)
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKL-LTITTNG 532
+L R PLF +D++ L V + EGDP D + + GK+ L T+
Sbjct: 6 VLRRNPLFAALDDEQSAELRASXSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPD 65
Query: 533 GRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLK-- 590
GR +G + GE L DP T T ALTEV+ AL DL+
Sbjct: 66 GRENXL--AVVGPSELIGELSL---FDPGP------RTATGTALTEVKLLALGHGDLQPW 114
Query: 591 -----FVASQFRRLHSKQLRHT 607
VA+ R +++LR T
Sbjct: 115 LNVRPEVATALLRAVARRLRKT 136
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKL-LTITTNG 532
+L R +F+ ++ + AL +L+PV + + EG+P D + I+ GK+ +
Sbjct: 29 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 88
Query: 533 GRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLK 590
GR +G D G EL + P++SS I TEV A ++ D L+
Sbjct: 89 GRENLLT--IMGPSDMFG-ELSIFDPGPRTSSATTI--------TEVRAVSMDRDALR 135
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKL-LTITTNG 532
+L R +F+ ++ + AL +L+PV + + EG+P D + I+ GK+ +
Sbjct: 29 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 88
Query: 533 GRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLK 590
GR G D G EL + P++SS I TEV A ++ D L+
Sbjct: 89 GRENLLT--IXGPSDMFG-ELSIFDPGPRTSSATTI--------TEVRAVSMDRDALR 135
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKL-LTITTNG 532
+L R +F+ ++ + AL +L+PV + + EG+P D + I+ GK+ +
Sbjct: 5 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 64
Query: 533 GRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLK 590
GR +G D G EL + P++SS I TEV A ++ D L+
Sbjct: 65 GRENLLT--IMGPSDMFG-ELSIFDPGPRTSSATTI--------TEVRAVSMDRDALR 111
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKL-LTITTNG 532
+L R +F+ ++ + AL +L+PV + + EG+P D + I+ GK+ +
Sbjct: 7 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 66
Query: 533 GRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLK 590
GR +G D G EL + P++SS I TEV A ++ D L+
Sbjct: 67 GRENLLT--IMGPSDMFG-ELSIFDPGPRTSSATTI--------TEVRAVSMDRDALR 113
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKL-LTITTNG 532
+L R +F+ ++ + AL +L+PV + + EG+P D + I+ GK+ +
Sbjct: 4 ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 63
Query: 533 GRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLK 590
GR +G D G EL + P++SS I TEV A ++ D L+
Sbjct: 64 GRENLLT--IMGPSDMFG-ELSIFDPGPRTSSATTI--------TEVRAVSMDRDALR 110
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 37/85 (43%)
Query: 467 KRHLCLALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLL 526
KR + L +V + E +++ + D L+PV + + IV +G+P D+ I G
Sbjct: 242 KRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTAS 301
Query: 527 TITTNGGRTGFFNSEYLGAGDFCGE 551
+ + LG D+ GE
Sbjct: 302 VLQRRSPNEEYVEVGRLGPSDYFGE 326
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 474 LLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKL-LTITTNG 532
+L R +F+ +D ++ L ++ V + + I EG+P D + I GK+ L
Sbjct: 27 ILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPD 86
Query: 533 GRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFALMADDLK 590
GR +G D G EL + P++SS + +TEV A + +D L+
Sbjct: 87 GRENLLT--IMGPSDMFG-ELSIFDPGPRTSSAV--------CVTEVHAATMNSDMLR 133
>pdb|2OZ6|A Chain A, Crystal Structure Of Virulence Factor Regulator From
Pseudomonas Aeruginosa In Complex With Camp
Length = 207
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 489 LDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKL-LTITTNGGRTGFFNSEYLGAGD 547
LD L YT +S I+ GD + + FI++G + + I + GR YL +GD
Sbjct: 6 LDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIG--YLNSGD 63
Query: 548 FCGE 551
F GE
Sbjct: 64 FFGE 67
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 353 FWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYL--QSTTTRLEE 410
WW + +++G +W C AV + ++G+ F + + T+ + R
Sbjct: 66 LWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQERRGHF 125
Query: 411 MRVKRRDAEQWMAHRLLPDTLRERIRRYEQ 440
+R + AE+ A+ L ER R E+
Sbjct: 126 VRHSEKAAEE--AYTRTTRALHERFDRLER 153
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 525 LLTITTNGGRTGFFNSEYLGAGDFCGEELLTWALDPQSSSNLPISTRTVRALTEVEAFAL 584
L+ + T GG + FN G C L TW P+ N P ++ ++ L V++ L
Sbjct: 145 LVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWN-PQTSSFLQVLVSVQSLIL 203
Query: 585 MADDL-----------KFVASQFRRLHSKQLRHTFRFYS--QQWRSWAACFIQAAWRRYS 631
+A+ +Q R + +R ++ +Q R+ + CF + + +
Sbjct: 204 VAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKWAXLEQIRNPSPCFKEVIHKHFY 263
Query: 632 KKKLEESLRAEE 643
K++E + EE
Sbjct: 264 LKRVEIXAQCEE 275
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 353 FWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYL 401
WW ++ +++G +W C AV + ++G+ F + + T+
Sbjct: 45 LWWSVQTATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 93
>pdb|3TQC|A Chain A, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
pdb|3TQC|B Chain B, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
Length = 321
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 589 LKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKKKLEESLRAEENRLQD 648
L F + F+ HS F + +Q + A F + W +K L E++ +NR Q
Sbjct: 249 LSFWRTTFKDPHS-----YFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQL 303
Query: 649 ALAKAGGSS 657
L KA S
Sbjct: 304 ILEKAADHS 312
>pdb|1ZUP|A Chain A, Crystal Structure Of A Putative Nuclease With A
Ribonuclease H-Like Motif Fold (Tm1739) From Thermotoga
Maritima At 2.20 A Resolution
pdb|1ZUP|B Chain B, Crystal Structure Of A Putative Nuclease With A
Ribonuclease H-Like Motif Fold (Tm1739) From Thermotoga
Maritima At 2.20 A Resolution
Length = 315
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 11/77 (14%)
Query: 476 MRVPLFEKMDEQLLDALCDRLKPVLYTEESYIV-----REGDPVDEMLFI--MRGKLLTI 528
+R+ E+++ +L + + D+ + EES + REG+ +D+++F+ R + I
Sbjct: 15 VRIERAERIESELEEHVGDQT----FVEESRFLEEDEQREGEILDQIIFVDGKRRSFVRI 70
Query: 529 TTNGGRTGFFNSEYLGA 545
TT+ G TG F +GA
Sbjct: 71 TTDEGITGIFAELCVGA 87
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 353 FWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYL 401
WW + +++G +W C AV + ++G+ F + + T+
Sbjct: 66 LWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 114
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 353 FWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYL 401
WW + +++G +W C AV + ++G+ F + + T+
Sbjct: 66 LWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 114
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 353 FWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYL 401
WW + +++G +W C AV + ++G+ F + + T+
Sbjct: 66 LWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 114
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 353 FWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYL 401
WW + +++G +W C AV + ++G+ F + + T+
Sbjct: 66 LWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 114
>pdb|3GYD|A Chain A, Crystal Structure Of A Cyclic Nucleotide-Binding Domain
(Mfla_1926) From Methylobacillus Flagellatus Kt At 1.79
A Resolution
pdb|3GYD|B Chain B, Crystal Structure Of A Cyclic Nucleotide-Binding Domain
(Mfla_1926) From Methylobacillus Flagellatus Kt At 1.79
A Resolution
Length = 187
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 472 LALLMRVPLFEKMDEQLLDALCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTN 531
L ++ ++ LF + + LC + + ++ EGDP D +L I+ G+ + + +
Sbjct: 38 LEIVNKIKLFGDFSNEEVRYLCSYXQCYAAPRDCQLLTEGDPGDYLLLILTGE-VNVIKD 96
Query: 532 GGRTGFFNSEYLGAGDFCGE 551
G +GAG GE
Sbjct: 97 IPNKGIQTIAKVGAGAIIGE 116
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 353 FWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYL 401
WW + +++G +W C AV + ++G+ F + + T+
Sbjct: 44 LWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 92
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 353 FWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYL 401
WW + +++G +W C AV + ++G+ F + + T+
Sbjct: 46 LWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 94
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 353 FWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYL 401
WW + +++G +W C AV + ++G+ F + + T+
Sbjct: 45 LWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWF 93
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 29.3 bits (64), Expect = 8.8, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 35/88 (39%)
Query: 353 FWWGLRNLSSLGQNLETSTYVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMR 412
WW + +++G +W AV + ++G+ F + + T+ + ++
Sbjct: 72 LWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQF 131
Query: 413 VKRRDAEQWMAHRLLPDTLRERIRRYEQ 440
V+ + A+ L ER R E+
Sbjct: 132 VRHSEKAAEEAYTRTTRALHERFDRLER 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,664,235
Number of Sequences: 62578
Number of extensions: 859057
Number of successful extensions: 2436
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2385
Number of HSP's gapped (non-prelim): 61
length of query: 709
length of database: 14,973,337
effective HSP length: 106
effective length of query: 603
effective length of database: 8,340,069
effective search space: 5029061607
effective search space used: 5029061607
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)