Your job contains 1 sequence.
>005200
MRFLLQHNPIAGSFSHSRLHKLSYLFMDSSTLRTAAASTRLFTINSSPCFSSSPRRLITT
SLAFKRINNNNYKNDDDNNNNHHPLTLRTKDLSSVSYRNHPTPTSETEEKMLDSRSWEIL
KIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWK
GSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNR
VMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVE
GEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILA
TDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE
LYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGK
SEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEE
FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ
TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGI
VIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDIV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005200
(709 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2204584 - symbol:AT1G30680 species:3702 "Arabi... 2039 6.3e-211 1
TAIR|locus:2204559 - symbol:AT1G30660 "AT1G30660" species... 805 3.7e-80 1
UNIPROTKB|Q1L7I7 - symbol:Q1L7I7 "Mitochondrial helicase ... 156 1.5e-11 2
DICTYBASE|DDB_G0288209 - symbol:DDB_G0288209 "T7-like mit... 151 5.0e-10 3
UNIPROTKB|Q1L7I8 - symbol:Q1L7I8 "Mitochondrial helicase ... 113 2.3e-06 2
UNIPROTKB|Q6NU50 - symbol:MGC81247 "MGC81247 protein" spe... 116 0.00017 2
>TAIR|locus:2204584 [details] [associations]
symbol:AT1G30680 species:3702 "Arabidopsis thaliana"
[GO:0003678 "DNA helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR007694
PROSITE:PS51199 InterPro:IPR006171 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0006260 GO:GO:0003678
GO:GO:0032508 eggNOG:NOG29349 Pfam:PF13662 SMART:SM00493
EMBL:BT046201 IPI:IPI00546189 RefSeq:NP_849735.1 UniGene:At.47034
ProteinModelPortal:B5X582 SMR:B5X582 PaxDb:B5X582 PRIDE:B5X582
EnsemblPlants:AT1G30680.1 GeneID:839948 KEGG:ath:AT1G30680
TAIR:At1g30680 HOGENOM:HOG000030580 OMA:GKSEWID PhylomeDB:B5X582
ProtClustDB:CLSN2918302 Genevestigator:B5X582 Uniprot:B5X582
Length = 709
Score = 2039 (722.8 bits), Expect = 6.3e-211, P = 6.3e-211
Identities = 390/666 (58%), Positives = 486/666 (72%)
Query: 46 SSPCFSSSPRRLITTSLAFKRIXXXXXXXXXXXXXXHHPLTLRTKDLSSV-SYRNHPTPT 104
SSP +SSS R++ + S F+ + + P RT LSS S PTP
Sbjct: 42 SSPSYSSS-RQVSSVSRRFRPVLASRPVSK------NSPYYQRTNGLSSYNSIPRVPTPV 94
Query: 105 S---ETEEKMLDSRSWEILKIKLKQLGLDIGRCAPGVENRMLCPKCNXXXXXXXXXXXXX 161
E +++++ SR L+ KL + G+D C PG + ++CP C
Sbjct: 95 DTEVEADKRVVLSRL-VTLRRKLAEQGVDAENCPPGQHSGLICPTCEGGNSGEKSLSLFI 153
Query: 162 XXXXXXAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNE 221
A W CFR KCG KG A + +S K++ R+IT + +ELEPL +E
Sbjct: 154 APDGSSATWNCFRGKCGLKGGVRA----DGGLASADPIEKVE--RKITVEGIELEPLCDE 207
Query: 222 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTE 281
++ YFA R IS +TL RNRVMQKR G E+VIAF YW+ G+LV+CKYR K F+QE+ T
Sbjct: 208 IQDYFAARAISRKTLERNRVMQKRIGDEIVIAFTYWQRGELVSCKYRSLTKMFFQERKTR 267
Query: 282 KVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKY 341
++ YGLDDIE S++IIVEGE+DKL+MEEAGFLNCVSVPDGAP+ VS K +PSE++DTKY
Sbjct: 268 RILYGLDDIEKTSEVIIVEGEIDKLAMEEAGFLNCVSVPDGAPAKVSSKEIPSEDKDTKY 327
Query: 342 QYLWNCKMYLKQASRIILATDGDPPGQALAEELAXXXXXXXXXXXXXPKKNDVDHFKDAN 401
++LWNC YLK+ASRI++ATDGD PGQA+AEE+A PKK++ +HFKDAN
Sbjct: 328 KFLWNCNDYLKKASRIVIATDGDGPGQAMAEEIARRLGKERCWRVKWPKKSEDEHFKDAN 387
Query: 402 EVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL 461
EVLM GP LKE + +AE YPI+GLF+F+D+FDEIDAYY RT G E+G+STGW+ L+ L
Sbjct: 388 EVLMSKGPHLLKEAILDAEPYPILGLFSFKDFFDEIDAYYDRTHGHEYGVSTGWKNLDNL 447
Query: 462 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIK 521
Y+V+PGELT+VTG+PNSGKSEWIDA++CN+N GWKF LCSMENKVR+HARKLLEKHIK
Sbjct: 448 YSVVPGELTVVTGIPNSGKSEWIDAMLCNLNHSVGWKFALCSMENKVRDHARKLLEKHIK 507
Query: 522 KPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV 581
KPFF+A+YG S +RM+VEE ++GK WL++TF IRCE DSLPSI WVL+ AKAAVLR+G+
Sbjct: 508 KPFFDADYGRSVQRMSVEEKDEGKKWLNDTFYPIRCEMDSLPSIDWVLERAKAAVLRYGI 567
Query: 582 RGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPP 641
RGLVIDPYNELDHQR QTETEYVSQMLT +KRF+QHH+CHVWFVAHP+QL +W G P
Sbjct: 568 RGLVIDPYNELDHQRTPRQTETEYVSQMLTKIKRFSQHHSCHVWFVAHPKQLQHWDGGAP 627
Query: 642 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRV 701
NLYDISGSAHFINKCDNGI++HRNRD AGP+D VQ+ VRKVRNKV G IG+A+L Y+R
Sbjct: 628 NLYDISGSAHFINKCDNGIIVHRNRDENAGPLDLVQIGVRKVRNKVAGQIGDAYLCYDRT 687
Query: 702 TGEYMD 707
TG Y D
Sbjct: 688 TGSYSD 693
>TAIR|locus:2204559 [details] [associations]
symbol:AT1G30660 "AT1G30660" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006304 "DNA modification"
evidence=ISS] InterPro:IPR006171 EMBL:CP002684 Pfam:PF13662
SMART:SM00493 IPI:IPI00537269 RefSeq:NP_174354.4 UniGene:At.51843
ProteinModelPortal:F4I6E6 SMR:F4I6E6 PRIDE:F4I6E6
EnsemblPlants:AT1G30660.1 GeneID:839946 KEGG:ath:AT1G30660
OMA:GDKLIAY Uniprot:F4I6E6
Length = 337
Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
Identities = 165/322 (51%), Positives = 211/322 (65%)
Query: 103 PTSETEEKMLDSRSWEILKIKLKQLGLDIGRCAPGVENRMLCPKCNXXXXXXXXXXXXXX 162
P E +K++ S+ +++ KL + G+D C PGV + ++CPKC
Sbjct: 22 PEEEAGKKVVLSKLVTLMR-KLSEQGIDAQNCPPGVRSCLICPKCEVGDSGEKSLTLYIY 80
Query: 163 XXXXXAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNEL 222
A W C R KCG KG VD S K++ R+IT +S++LEPL +E+
Sbjct: 81 PDGSSAKWTC-RRKCGLKGVLQ--VDGKLV--SKDPIGKVE--RKITVESIKLEPLCDEI 133
Query: 223 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK 282
+ +FA R IS +TL RNRVMQKR E+VIAF YW+ G+LV+CKYR KKF QE++T K
Sbjct: 134 QDFFAARAISGKTLERNRVMQKRIDDEIVIAFTYWQRGELVSCKYRSLTKKFVQERNTRK 193
Query: 283 VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 342
+ YGLDDIE S+IIIVEGE DKL+MEEAGF NCVSVPDGAP +VS K +PSE +DT ++
Sbjct: 194 ILYGLDDIEETSEIIIVEGEPDKLAMEEAGFFNCVSVPDGAPETVSSKEIPSESKDTAFK 253
Query: 343 YLWNCKMYLKQASRIILATDGDPPGQALAEELAXXXXXXXXXXXXXPKKNDVDHFKDANE 402
Y+WNC YLK+ASRI++ATDGD PGQALAEELA PKK++ +HFKDANE
Sbjct: 254 YIWNCNDYLKKASRIVIATDGDGPGQALAEELARRLGKERCWLVKWPKKSEDEHFKDANE 313
Query: 403 VLMYLGPGALKEVVENAELYPI 424
VLM GP LKE + NAE YP+
Sbjct: 314 VLMSKGPHLLKEAILNAEPYPL 335
>UNIPROTKB|Q1L7I7 [details] [associations]
symbol:Q1L7I7 "Mitochondrial helicase twinkle" species:5755
"Acanthamoeba castellanii" [GO:0003697 "single-stranded DNA
binding" evidence=ISS] [GO:0006264 "mitochondrial DNA replication"
evidence=ISS] [GO:0042645 "mitochondrial nucleoid" evidence=ISS]
[GO:0043139 "5'-3' DNA helicase activity" evidence=ISS]
InterPro:IPR002694 InterPro:IPR007694 PROSITE:PS51199
InterPro:IPR006171 GO:GO:0005524 GO:GO:0008270 GO:GO:0042645
GO:GO:0003697 GO:GO:0003896 GO:GO:0043139 GO:GO:0006264
GO:GO:0006269 Gene3D:3.90.580.10 Pfam:PF13662 SMART:SM00493
EMBL:DQ005447 ProteinModelPortal:Q1L7I7 Uniprot:Q1L7I7
Length = 765
Score = 156 (60.0 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 88/367 (23%), Positives = 153/367 (41%)
Query: 351 LKQASRIILATDGDPPGQALAEELAXXXXXXXXXXXXXPKKNDVDHFKDANEVLMYLGPG 410
L++ +I L D D PGQ A + A K+ D + KDAN+ L G
Sbjct: 381 LERFEKIYLWMDDDIPGQEGAAKFAQKLGIKRCLLVRT-KQGDPEGPKDANDALR-AGKD 438
Query: 411 ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-GI-STGWRALNE-LYNVLPG 467
L +++ A P + +F+D DE+ Y + S DE G+ S + +L + L G
Sbjct: 439 -LNAILKKAGRTPHQQVISFQDIADEV--YRNICSPDELAGVPSKMFPSLTKILKGHRKG 495
Query: 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 527
ELT+ TG GK+ + L + G + + + E K A+K+L ++ K E
Sbjct: 496 ELTVFTGPTGVGKTTLLSQLSLDFAMQ-GVRTLWGNFEIKNTYLAQKMLLQYAGKNLAEL 554
Query: 528 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 587
+R +E +A+ +R + S+ VLD AV H V +V+D
Sbjct: 555 Q-----DRAQWDE--ASRAFSDLPLYWMRFHGST--SVDQVLDAMDYAVYVHDVEHVVLD 605
Query: 588 PYNEL------DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPP 641
+ + + + + + L +RFA H+ V HPR+ + P
Sbjct: 606 NLQFMLSGQAWGQEGVAAGNKFDIQDRALEEFRRFASTKNVHITLVIHPRKTED--DRPL 663
Query: 642 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRV 701
N+ + GS + DN +++ N+ + ++ V K N+ G +G L +N+
Sbjct: 664 NVASVFGSVKATQEADNVLILQYNKGEDWKWLE-----VAK--NRFDGELGPIALQFNKR 716
Query: 702 TGEYMDI 708
Y ++
Sbjct: 717 NKSYREM 723
Score = 87 (35.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 37/141 (26%), Positives = 67/141 (47%)
Query: 219 GNELRAYFAERLISAETLRRNRVMQKRHGH----EVVIAFPY------WRNGKLVNCKYR 268
GN+ + +R +S E +R+ +V ++ E + FP+ RN + K R
Sbjct: 256 GNKTKV---QRHLSEEVIRKYKVGATKYAFGGDSEQCVTFPWIDADAEGRNS-IRRLKIR 311
Query: 269 DFNKKFWQEKDT---EKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAP 324
K Q + F+G + ++ +I+I EGE D +++ +A L +S+P+GA
Sbjct: 312 SIKNKANQRLTPAGGQWGFFGWHTVPADAKEIVITEGEFDAMAVYQATGLPAISLPNGA- 370
Query: 325 SSVSKKNVPSEEQDTKYQYLW 345
S+ + +P E+ K YLW
Sbjct: 371 HSLPVELLPRLERFEKI-YLW 390
>DICTYBASE|DDB_G0288209 [details] [associations]
symbol:DDB_G0288209 "T7-like mitochondrial DNA
helicase" species:44689 "Dictyostelium discoideum" [GO:0043139
"5'-3' DNA helicase activity" evidence=IEA;ISS] [GO:0032508 "DNA
duplex unwinding" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA;ISS] [GO:0003678 "DNA
helicase activity" evidence=IEA] [GO:0042645 "mitochondrial
nucleoid" evidence=ISS] [GO:0006264 "mitochondrial DNA replication"
evidence=ISS] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR007694 PROSITE:PS51199 dictyBase:DDB_G0288209
InterPro:IPR006171 GO:GO:0005524 GO:GO:0042645 GO:GO:0003697
EMBL:AAFI02000109 GO:GO:0043139 GO:GO:0006264 eggNOG:NOG29349
Pfam:PF13662 SMART:SM00493 RefSeq:XP_636842.1
ProteinModelPortal:Q54J94 EnsemblProtists:DDB0304578 GeneID:8626511
KEGG:ddi:DDB_G0288209 InParanoid:Q54J94 OMA:ATHMNCH
ProtClustDB:CLSZ2429916 Uniprot:Q54J94
Length = 772
Score = 151 (58.2 bits), Expect = 5.0e-10, Sum P(3) = 5.0e-10
Identities = 84/363 (23%), Positives = 150/363 (41%)
Query: 351 LKQASRIILATDGDPPGQALAEELAXXXXXXXXXXXXXPKKNDVDHFKDANEVLMYLGPG 410
L++ +I L D D PG A + + K+ND + KDAN+ L+ G
Sbjct: 416 LERFEKIYLWMDDDVPGMEGAAKFSEKLGIQRTFIVST-KQNDPNGPKDANDALL-AGKD 473
Query: 411 ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGI---STGW-RALNE-LYNVL 465
LK ++ A P + +F D + + H D + + W + N+ L
Sbjct: 474 -LKAILSTAANIPHDQICDFSD----VRSIIHNELKDPLSVIGKQSKWFPSFNKVLKGHR 528
Query: 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 525
GELTI +G GK+ + L + G + + S E KV ARK+L + F
Sbjct: 529 KGELTIFSGPTGIGKTSVLSQLSLDFCSQ-GTRTLWGSFELKVPRLARKMLSQ-----FS 582
Query: 526 EANYGGSAERMTVEEFEQGKAWLSNT-FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGL 584
N VE +++ SN +R + + V+D + AV V +
Sbjct: 583 NCNLDKH-----VENYQEIADNFSNMPMYFLRFFGST--QVDKVIDAMEYAVYVQDVEHI 635
Query: 585 VIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLY 644
V+D + + E + + +++FA H+ V HPR+ + + N+
Sbjct: 636 VLDNLQFMLGSQAKGIERFEIMDDSIEKLRKFASQKNVHITLVIHPRKQD--IDQVLNIN 693
Query: 645 DISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGE 704
DI G+A + DN I++ +++ + +D ++K N+ G +G LS+ + T
Sbjct: 694 DIFGTAKATQEADNVIILQNSKNNQRY-LD-----IKK--NRFSGDLGIIPLSFEKETNR 745
Query: 705 YMD 707
+ +
Sbjct: 746 FSE 748
Score = 83 (34.3 bits), Expect = 5.0e-10, Sum P(3) = 5.0e-10
Identities = 29/92 (31%), Positives = 50/92 (54%)
Query: 259 NGKLVNCKYRDFNKKFWQE---KDTEKVFYGLDDIEGES-DIIIVEGEMDKLSM-EEAGF 313
N ++ CK R +K Q K + F+G I ++ +II+ EGE D +++ +E G
Sbjct: 337 NIQVHRCKLRSTKEKSLQRIEPKGGKWGFFGWHTIPSDAKEIILTEGEYDAMAVYQETG- 395
Query: 314 LNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLW 345
+ +S+P+GA +S+ +P E+ K YLW
Sbjct: 396 IPTISLPNGA-NSLPIALLPLLERFEKI-YLW 425
Score = 38 (18.4 bits), Expect = 5.0e-10, Sum P(3) = 5.0e-10
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 116 SWEILKIKLKQLGLDIGRCAPGVEN 140
SW LK+ L L LD P +++
Sbjct: 218 SWIDLKVNLGDLSLDHSNHKPIIKS 242
>UNIPROTKB|Q1L7I8 [details] [associations]
symbol:Q1L7I8 "Mitochondrial helicase twinkle" species:5778
"Vermamoeba vermiformis" [GO:0003697 "single-stranded DNA binding"
evidence=ISS] [GO:0006264 "mitochondrial DNA replication"
evidence=ISS] [GO:0042645 "mitochondrial nucleoid" evidence=ISS]
[GO:0043139 "5'-3' DNA helicase activity" evidence=ISS]
InterPro:IPR002694 InterPro:IPR007694 PROSITE:PS51199
InterPro:IPR006171 GO:GO:0005524 GO:GO:0008270 GO:GO:0042645
GO:GO:0003697 GO:GO:0003896 GO:GO:0043139 GO:GO:0006264
GO:GO:0006269 Gene3D:3.90.580.10 Pfam:PF13662 SMART:SM00493
EMBL:DQ005446 ProteinModelPortal:Q1L7I8 Uniprot:Q1L7I8
Length = 724
Score = 113 (44.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 80/369 (21%), Positives = 154/369 (41%)
Query: 351 LKQASRIILATDGDPPGQALAEELAXXXXXXXXXXXXXPKKNDVDHFKDANEVLMYLGPG 410
L++ +I L D D GQ A++ A K KDAN+ L G
Sbjct: 362 LERFDKIYLWLDDDVVGQQAAQKYALKLGRERCYLVST-KLGATTGPKDANDALRQ-GHD 419
Query: 411 ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG--ISTGWRALNELYNV-LPG 467
L +++ A P + NF + E+ + + D+ + LN+L G
Sbjct: 420 -LGTILKAARRLPHKQILNFNEIRSEV--FRELANPDQVAGRQMRSFPTLNKLLKGHRKG 476
Query: 468 ELTIVTGVPNSGKSEWIDAL---ICNINEHAGW-KFVLCSMENKVREHARKLLEKHIKKP 523
EL+I+TG GK+ I + +C+ + W F L N VR A+K+L + +K
Sbjct: 477 ELSILTGPTGIGKTTIISQISMDLCSQGVNTLWGSFEL----NNVRL-AKKMLNQFAQKN 531
Query: 524 FFEANYGGSAE-RMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR 582
E + AE + ++F Q + +R + ++ VLD AV + V
Sbjct: 532 L-EKHL---AEFDLWADKFSQVPLYF------MRFHGGT--EVEAVLDAMDYAVYVYDVE 579
Query: 583 GLVIDPYN---ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGE 639
+V+D ++ H + + + + +++ ++FA H+ + HPR+ + G+
Sbjct: 580 HIVLDNLQFMMQVGHFKGYERFDQ--LDSAISLFRKFATEKNVHITLIIHPRKEDD--GQ 635
Query: 640 PPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYN 699
++ + G+A + DN I++ + G R + +N+ G +G Y+
Sbjct: 636 ALSINSVFGTAKATQEADNVIIVQK------GKYYRY---LEVTKNRFSGDLGIVPYKYD 686
Query: 700 RVTGEYMDI 708
+ + +Y ++
Sbjct: 687 KESHKYFEL 695
Score = 81 (33.6 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 262 LVNCKYRDFNKKFWQEKDTEK---VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVS 318
LV KYR K+ Q + +G + I E+ +II EGE D +++ +A L +S
Sbjct: 287 LVRYKYRALGGKWLQRLEPIGGGWCVFGWNLIAPETSVIITEGEFDAMAVYQATGLPAIS 346
Query: 319 VPDGAPSSVSKKNVPSEEQDTKYQYLW 345
+P GA + + + + E+ K YLW
Sbjct: 347 LPCGA-NCLPVEVITMLERFDKI-YLW 371
>UNIPROTKB|Q6NU50 [details] [associations]
symbol:MGC81247 "MGC81247 protein" species:8355 "Xenopus
laevis" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0006264 "mitochondrial DNA replication" evidence=ISS]
[GO:0042645 "mitochondrial nucleoid" evidence=ISS] [GO:0043139
"5'-3' DNA helicase activity" evidence=ISS] InterPro:IPR007694
PROSITE:PS51199 GO:GO:0005524 GO:GO:0042645 GO:GO:0003697
GO:GO:0043139 GO:GO:0006264 HOVERGEN:HBG059782 CTD:56652
EMBL:BC068751 RefSeq:NP_001084540.1 UniGene:Xl.34767
ProteinModelPortal:Q6NU50 GeneID:414487 KEGG:xla:414487
Xenbase:XB-GENE-6252836 Uniprot:Q6NU50
Length = 679
Score = 116 (45.9 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 71/285 (24%), Positives = 118/285 (41%)
Query: 427 LFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSE 482
+ +FR +E+ + + D+ W EL +L G ELT+ TG SGK+
Sbjct: 385 IISFRQLREEV--FGQLENADQVA-GVKWNRFPELNKLLKGHRRGELTVFTGPTGSGKTT 441
Query: 483 WID--AL-ICNINEHAGW-KFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTV 538
+I AL +C + W F L N VR L K + F + +R+
Sbjct: 442 FISEYALDLCIQGINTLWGSFEL----NNVR------LAKIMLTQF-------ALQRLE- 483
Query: 539 EEFEQGKAWLSNTFSLIRC--ENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR 596
E+ ++ W L C +IK V+D + AV + + ++ID + Q
Sbjct: 484 EQLDKYDEWADKFEDLPLCFMTFHGQQNIKAVMDTMQHAVYMYDITHVIIDNLQFMMGQE 543
Query: 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKC 656
+ M+ ++FA + CHV V HPR+ + + I GSA +
Sbjct: 544 NIYSDRFAAQDYMVGAFRKFATVNNCHVTVVIHPRKEDD--DKELQTSSIFGSAKASQEA 601
Query: 657 DNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
DN ++I ++R G R +QV +N+ G +G L +N+
Sbjct: 602 DN-VLILQDRKLVTGQGKRHLQVA----KNRFDGEVGVFSLEFNK 641
Score = 59 (25.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 44/176 (25%), Positives = 82/176 (46%)
Query: 186 LVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNE----LRAYFAERLISAETLRRNRV 241
LVD++ S S+ + K +R I + ++ LG E ++A F I+ TL++ V
Sbjct: 156 LVDSD-SDSAEDQL-KDSEVRRIWDRAVWFSDLGEEESHQIKAMFNITKIANNTLKKFGV 213
Query: 242 MQKRHGHEVVIAFPYW--RNGKLVNCKY--RDFNKKFWQEKDTEKV----FYGLDD--IE 291
+ +V FP++ R+ L K + NK+ +T +Y L +
Sbjct: 214 KCFQPTKSLV--FPWYNPRDSSLNGLKLLSAECNKQKVHYVETTYPRPARYYNLFGLCVS 271
Query: 292 G--ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLW 345
G E++++I E+D L++ ++ + +++P GA S + +P EQ K LW
Sbjct: 272 GKKETEVVITSREVDCLAIHQSTGVTTIALPRGA-SCLPPVLLPYLEQ-FKRIVLW 325
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 709 663 0.00098 120 3 11 22 0.39 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 627 (67 KB)
Total size of DFA: 399 KB (2194 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 54.41u 0.11s 54.52t Elapsed: 00:00:03
Total cpu time: 54.41u 0.11s 54.52t Elapsed: 00:00:03
Start: Mon May 20 23:41:53 2013 End: Mon May 20 23:41:56 2013