Query 005200
Match_columns 709
No_of_seqs 326 out of 2999
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 18:26:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q57_A DNA primase/helicase; d 100.0 2.4E-62 8.1E-67 555.3 36.0 453 221-708 13-482 (503)
2 4a1f_A DNAB helicase, replicat 100.0 5.4E-42 1.9E-46 364.5 15.5 267 431-708 9-317 (338)
3 3bh0_A DNAB-like replicative h 100.0 3E-38 1E-42 336.0 27.1 271 427-708 27-308 (315)
4 3bgw_A DNAB-like replicative h 100.0 2E-37 6.8E-42 343.6 26.5 252 446-708 175-437 (444)
5 2q6t_A DNAB replication FORK h 100.0 6.1E-36 2.1E-40 333.1 29.8 266 432-708 165-440 (444)
6 2au3_A DNA primase; zinc ribbo 100.0 4.1E-37 1.4E-41 337.4 13.0 265 118-422 14-351 (407)
7 2r6a_A DNAB helicase, replicat 100.0 2.9E-34 9.8E-39 320.6 28.2 267 432-708 168-441 (454)
8 1nui_A DNA primase/helicase; z 100.0 1.3E-30 4.3E-35 268.8 13.4 238 141-417 14-255 (255)
9 1cr0_A DNA primase/helicase; R 100.0 6.2E-28 2.1E-32 254.4 24.7 262 435-709 3-276 (296)
10 4edg_A DNA primase; catalytic 99.9 5.2E-26 1.8E-30 239.4 13.5 181 216-421 26-259 (329)
11 1dd9_A DNA primase, DNAG; topr 99.9 2.2E-25 7.6E-30 236.3 16.2 181 217-422 39-273 (338)
12 2zts_A Putative uncharacterize 99.9 3.1E-25 1.1E-29 226.8 15.6 222 446-690 7-230 (251)
13 1xp8_A RECA protein, recombina 99.8 7.8E-21 2.7E-25 204.7 17.2 218 446-701 50-283 (366)
14 2z43_A DNA repair and recombin 99.8 1.1E-20 3.7E-25 201.5 17.8 236 410-690 56-309 (324)
15 1v5w_A DMC1, meiotic recombina 99.8 2.6E-20 9E-25 200.0 18.4 243 410-691 71-329 (343)
16 2dr3_A UPF0273 protein PH0284; 99.8 8.2E-20 2.8E-24 186.1 21.0 211 449-690 3-219 (247)
17 2i1q_A DNA repair and recombin 99.8 1.5E-20 5.2E-25 200.3 15.9 233 414-691 51-311 (322)
18 3cmw_A Protein RECA, recombina 99.8 5.6E-20 1.9E-24 227.7 19.4 213 446-696 708-935 (1706)
19 2cvh_A DNA repair and recombin 99.8 5.9E-19 2E-23 176.6 21.2 201 450-691 1-206 (220)
20 1u94_A RECA protein, recombina 99.8 4E-19 1.4E-23 190.8 19.9 206 447-690 40-260 (356)
21 3cmu_A Protein RECA, recombina 99.8 5.1E-20 1.8E-24 229.9 14.8 215 447-699 360-589 (2050)
22 3cmw_A Protein RECA, recombina 99.8 3.5E-19 1.2E-23 220.6 18.5 212 447-696 360-586 (1706)
23 1nlf_A Regulatory protein REPA 99.8 1.4E-18 4.6E-23 181.3 19.9 233 448-707 10-262 (279)
24 3hr8_A Protein RECA; alpha and 99.8 1.6E-18 5.6E-23 185.3 18.9 213 448-698 39-266 (356)
25 3lda_A DNA repair protein RAD5 99.8 9.5E-19 3.2E-23 190.5 14.6 210 447-690 156-382 (400)
26 2zr9_A Protein RECA, recombina 99.8 7.7E-18 2.6E-22 180.7 21.3 206 447-690 38-258 (349)
27 1n0w_A DNA repair protein RAD5 99.8 9.2E-18 3.1E-22 170.6 19.4 209 448-690 3-228 (243)
28 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.1E-16 3.6E-21 161.3 22.6 207 449-690 3-214 (235)
29 3io5_A Recombination and repai 99.7 2.5E-16 8.6E-21 163.4 18.4 199 448-686 4-225 (333)
30 4a74_A DNA repair and recombin 99.6 1.5E-15 5.2E-20 152.8 16.0 200 447-691 3-220 (231)
31 3cmu_A Protein RECA, recombina 99.6 1.7E-15 5.8E-20 189.5 17.5 182 446-665 708-901 (2050)
32 1pzn_A RAD51, DNA repair and r 99.6 7.9E-15 2.7E-19 157.5 14.9 210 447-690 109-337 (349)
33 1tf7_A KAIC; homohexamer, hexa 99.5 2.5E-13 8.7E-18 154.0 20.6 201 447-688 259-463 (525)
34 2ehv_A Hypothetical protein PH 99.5 4.7E-13 1.6E-17 136.2 20.0 216 447-689 8-229 (251)
35 3bs4_A Uncharacterized protein 99.4 1.7E-12 5.9E-17 132.4 16.6 221 450-701 2-246 (260)
36 1d0q_A DNA primase; zinc-bindi 99.1 6.2E-12 2.1E-16 110.0 1.1 62 117-190 16-77 (103)
37 2vhj_A Ntpase P4, P4; non- hyd 99.0 4.8E-10 1.6E-14 117.0 9.1 125 450-630 105-235 (331)
38 1tf7_A KAIC; homohexamer, hexa 98.8 2.8E-07 9.7E-12 104.2 23.3 202 448-686 18-228 (525)
39 2b8t_A Thymidine kinase; deoxy 98.6 4.5E-08 1.5E-12 97.7 7.4 145 464-666 9-153 (223)
40 1t6t_1 Putative protein; struc 98.5 1E-07 3.6E-12 84.0 7.0 71 294-384 21-92 (118)
41 2j9r_A Thymidine kinase; TK1, 97.7 9.8E-05 3.4E-09 72.5 10.0 141 464-666 25-165 (214)
42 3gfo_A Cobalt import ATP-bindi 97.6 0.00016 5.6E-09 74.3 10.1 61 578-664 159-219 (275)
43 3ec2_A DNA replication protein 97.6 0.00029 9.8E-09 67.3 10.7 42 464-505 35-76 (180)
44 1xx6_A Thymidine kinase; NESG, 97.6 9.3E-05 3.2E-09 71.8 7.2 138 465-664 6-143 (191)
45 1w4r_A Thymidine kinase; type 97.6 6E-05 2.1E-09 72.9 5.1 133 465-665 18-153 (195)
46 2orv_A Thymidine kinase; TP4A 97.5 0.00018 6.2E-09 71.3 8.1 136 465-665 17-152 (234)
47 3dm5_A SRP54, signal recogniti 97.5 0.0014 4.8E-08 71.5 15.5 40 466-506 99-138 (443)
48 2fcj_A Small toprim domain pro 97.4 0.00059 2E-08 60.2 9.6 78 294-390 5-84 (119)
49 3tif_A Uncharacterized ABC tra 97.3 0.0011 3.8E-08 66.4 11.2 60 578-664 161-220 (235)
50 1j8m_F SRP54, signal recogniti 97.3 0.0052 1.8E-07 63.7 16.6 40 467-507 98-137 (297)
51 3e2i_A Thymidine kinase; Zn-bi 97.3 0.0009 3.1E-08 65.6 9.9 141 464-666 25-165 (219)
52 1vma_A Cell division protein F 97.2 0.0078 2.7E-07 62.6 17.1 43 464-507 101-143 (306)
53 4g1u_C Hemin import ATP-bindin 97.2 0.00036 1.2E-08 71.4 6.6 59 580-664 165-223 (266)
54 3kl4_A SRP54, signal recogniti 97.2 0.0069 2.3E-07 66.0 17.0 60 466-526 96-157 (433)
55 3tui_C Methionine import ATP-b 97.2 0.00068 2.3E-08 72.3 8.5 61 578-664 179-239 (366)
56 1g6h_A High-affinity branched- 97.2 0.00081 2.8E-08 68.4 8.5 59 578-663 169-227 (257)
57 3e70_C DPA, signal recognition 97.1 0.0082 2.8E-07 63.1 16.2 143 464-630 126-278 (328)
58 3rlf_A Maltose/maltodextrin im 97.1 0.0027 9.1E-08 68.1 12.4 53 568-630 141-193 (381)
59 3fvq_A Fe(3+) IONS import ATP- 97.1 0.0013 4.5E-08 69.9 9.7 45 578-630 154-198 (359)
60 1zu4_A FTSY; GTPase, signal re 97.0 0.0057 1.9E-07 64.2 13.8 43 464-507 102-144 (320)
61 1fnn_A CDC6P, cell division co 97.0 0.0046 1.6E-07 66.1 13.3 52 465-516 40-95 (389)
62 1v43_A Sugar-binding transport 97.0 0.002 6.9E-08 69.0 10.2 45 578-630 157-201 (372)
63 1z47_A CYSA, putative ABC-tran 97.0 0.0038 1.3E-07 66.4 12.1 45 578-630 161-205 (355)
64 1vpl_A ABC transporter, ATP-bi 97.0 0.0032 1.1E-07 63.8 11.2 32 457-488 30-62 (256)
65 2ihy_A ABC transporter, ATP-bi 97.0 0.00097 3.3E-08 68.6 7.0 32 457-488 36-68 (279)
66 2olj_A Amino acid ABC transpor 97.0 0.0041 1.4E-07 63.4 11.5 60 578-664 175-234 (263)
67 2qby_B CDC6 homolog 3, cell di 97.0 0.0021 7.1E-08 68.8 9.7 55 467-521 45-109 (384)
68 2yz2_A Putative ABC transporte 97.0 0.0014 4.7E-08 67.0 7.9 60 577-663 153-212 (266)
69 1rj9_A FTSY, signal recognitio 97.0 0.012 3.9E-07 61.3 15.1 40 466-506 101-140 (304)
70 2nq2_C Hypothetical ABC transp 96.9 0.0032 1.1E-07 63.8 10.4 151 458-630 21-188 (253)
71 2v1u_A Cell division control p 96.9 0.0075 2.6E-07 64.2 13.9 53 465-517 42-101 (387)
72 3b9q_A Chloroplast SRP recepto 96.9 0.0057 2E-07 63.6 12.5 43 464-507 97-139 (302)
73 1b0u_A Histidine permease; ABC 96.9 0.003 1E-07 64.4 10.1 60 578-664 169-228 (262)
74 2yhs_A FTSY, cell division pro 96.9 0.015 5E-07 64.2 15.7 42 464-506 290-331 (503)
75 2og2_A Putative signal recogni 96.9 0.0086 3E-07 63.7 13.4 43 464-507 154-196 (359)
76 2qen_A Walker-type ATPase; unk 96.9 0.0066 2.2E-07 63.7 12.5 134 464-629 28-172 (350)
77 2ffh_A Protein (FFH); SRP54, s 96.9 0.026 8.7E-07 61.4 17.3 141 466-629 97-246 (425)
78 1g29_1 MALK, maltose transport 96.8 0.0065 2.2E-07 65.0 12.3 45 578-630 155-199 (372)
79 2px0_A Flagellar biosynthesis 96.8 0.0093 3.2E-07 61.8 13.1 42 465-506 103-144 (296)
80 2pcj_A ABC transporter, lipopr 96.8 0.0029 1E-07 62.8 8.9 58 578-663 156-213 (224)
81 1jbk_A CLPB protein; beta barr 96.8 0.004 1.4E-07 58.8 9.5 38 467-504 43-86 (195)
82 2yyz_A Sugar ABC transporter, 96.8 0.0019 6.5E-08 68.8 7.7 45 578-630 149-193 (359)
83 4gp7_A Metallophosphoesterase; 96.8 0.0032 1.1E-07 59.6 8.6 24 464-487 6-29 (171)
84 2qby_A CDC6 homolog 1, cell di 96.8 0.0043 1.5E-07 66.1 10.6 39 466-504 44-84 (386)
85 1ls1_A Signal recognition part 96.8 0.018 6.1E-07 59.6 14.9 41 466-507 97-137 (295)
86 2orw_A Thymidine kinase; TMTK, 96.8 0.0014 4.9E-08 63.0 6.0 138 466-665 2-139 (184)
87 4b4t_J 26S protease regulatory 96.8 0.0099 3.4E-07 63.9 13.0 114 462-629 177-295 (405)
88 2it1_A 362AA long hypothetical 96.8 0.0084 2.9E-07 63.8 12.2 45 578-630 149-193 (362)
89 3d31_A Sulfate/molybdate ABC t 96.7 0.00078 2.7E-08 71.5 4.2 45 578-630 143-187 (348)
90 1ji0_A ABC transporter; ATP bi 96.7 0.002 6.8E-08 64.8 6.8 60 577-663 154-213 (240)
91 2xxa_A Signal recognition part 96.7 0.042 1.4E-06 60.0 17.8 40 467-506 100-139 (433)
92 1oxx_K GLCV, glucose, ABC tran 96.7 0.0022 7.7E-08 68.2 7.4 45 578-630 156-200 (353)
93 2ff7_A Alpha-hemolysin translo 96.7 0.0038 1.3E-07 63.0 8.7 32 458-489 25-57 (247)
94 4b4t_K 26S protease regulatory 96.6 0.0085 2.9E-07 65.2 11.0 115 461-629 200-319 (428)
95 4b4t_L 26S protease subunit RP 96.6 0.017 5.8E-07 63.0 13.3 114 462-629 210-328 (437)
96 3j16_B RLI1P; ribosome recycli 96.6 0.011 3.8E-07 67.4 12.4 158 464-664 375-543 (608)
97 2r8r_A Sensor protein; KDPD, P 96.5 0.0028 9.4E-08 62.7 6.2 40 466-506 4-44 (228)
98 3ozx_A RNAse L inhibitor; ATP 96.5 0.005 1.7E-07 69.3 8.9 61 578-664 401-461 (538)
99 1w5s_A Origin recognition comp 96.5 0.018 6E-07 62.0 12.9 53 466-518 49-110 (412)
100 3nh6_A ATP-binding cassette SU 96.4 0.004 1.4E-07 64.8 6.9 32 457-488 69-101 (306)
101 1c9k_A COBU, adenosylcobinamid 96.4 0.002 6.8E-08 61.6 4.1 42 469-515 1-43 (180)
102 2j37_W Signal recognition part 96.4 0.053 1.8E-06 60.3 16.2 39 467-506 101-139 (504)
103 1yqt_A RNAse L inhibitor; ATP- 96.4 0.013 4.4E-07 66.0 11.3 61 578-664 417-477 (538)
104 4b4t_I 26S protease regulatory 96.4 0.028 9.5E-07 60.8 13.3 114 462-629 211-329 (437)
105 3bk7_A ABC transporter ATP-bin 96.4 0.021 7.3E-07 65.1 13.1 158 464-664 379-547 (607)
106 1g5t_A COB(I)alamin adenosyltr 96.3 0.0091 3.1E-07 57.7 8.3 38 468-506 29-66 (196)
107 3eie_A Vacuolar protein sortin 96.3 0.031 1E-06 58.5 13.1 36 465-504 49-84 (322)
108 3cf0_A Transitional endoplasmi 96.3 0.011 3.7E-07 61.4 9.4 36 464-503 46-81 (301)
109 2onk_A Molybdate/tungstate ABC 96.3 0.0013 4.6E-08 66.1 2.3 61 578-664 142-202 (240)
110 2p65_A Hypothetical protein PF 96.3 0.012 4.1E-07 55.3 9.0 37 467-503 43-85 (187)
111 3h4m_A Proteasome-activating n 96.2 0.019 6.6E-07 58.6 10.8 38 463-504 47-84 (285)
112 4b4t_H 26S protease regulatory 96.2 0.029 1E-06 61.2 12.1 40 461-504 237-276 (467)
113 2yvu_A Probable adenylyl-sulfa 96.1 0.0046 1.6E-07 59.1 5.1 46 458-504 4-49 (186)
114 1sgw_A Putative ABC transporte 96.1 0.03 1E-06 55.1 10.8 32 457-488 24-56 (214)
115 1xwi_A SKD1 protein; VPS4B, AA 96.1 0.044 1.5E-06 57.3 12.7 39 464-505 42-80 (322)
116 2z4s_A Chromosomal replication 96.0 0.025 8.5E-07 62.0 11.1 40 467-506 130-170 (440)
117 2iut_A DNA translocase FTSK; n 96.0 0.015 5.1E-07 65.2 9.1 148 464-631 211-389 (574)
118 3bos_A Putative DNA replicatio 96.0 0.0074 2.5E-07 59.5 6.0 42 464-506 49-90 (242)
119 2kjq_A DNAA-related protein; s 96.0 0.0067 2.3E-07 56.1 5.2 39 466-505 35-73 (149)
120 3pih_A Uvrabc system protein A 96.0 0.046 1.6E-06 65.0 13.6 33 458-490 600-633 (916)
121 3ice_A Transcription terminati 96.0 0.011 3.7E-07 63.0 7.3 64 449-512 156-220 (422)
122 2ius_A DNA translocase FTSK; n 96.0 0.011 3.7E-07 65.8 7.7 43 583-631 300-343 (512)
123 3cf2_A TER ATPase, transitiona 95.9 0.039 1.3E-06 64.7 12.3 114 462-629 233-348 (806)
124 4b4t_M 26S protease regulatory 95.9 0.033 1.1E-06 60.7 11.0 38 463-504 211-248 (434)
125 3qxc_A Dethiobiotin synthetase 95.9 0.21 7.3E-06 49.9 16.1 138 469-632 24-172 (242)
126 3syl_A Protein CBBX; photosynt 95.9 0.057 1.9E-06 55.7 12.4 37 466-503 66-106 (309)
127 4f4c_A Multidrug resistance pr 95.8 0.0075 2.6E-07 75.2 6.2 174 458-665 1095-1291(1321)
128 3b9p_A CG5977-PA, isoform A; A 95.8 0.081 2.8E-06 54.2 13.0 35 466-504 53-87 (297)
129 1sky_E F1-ATPase, F1-ATP synth 95.7 0.02 6.7E-07 62.8 8.4 65 447-511 131-195 (473)
130 3t15_A Ribulose bisphosphate c 95.7 0.041 1.4E-06 56.7 10.6 35 466-504 35-69 (293)
131 3igf_A ALL4481 protein; two-do 95.7 0.013 4.5E-07 62.7 6.7 36 468-504 3-38 (374)
132 3b60_A Lipid A export ATP-bind 95.7 0.039 1.3E-06 62.7 11.0 33 457-489 358-391 (582)
133 3b5x_A Lipid A export ATP-bind 95.6 0.03 1E-06 63.7 9.5 34 457-490 358-392 (582)
134 2qz4_A Paraplegin; AAA+, SPG7, 95.5 0.047 1.6E-06 54.7 10.0 37 465-505 37-73 (262)
135 3c8u_A Fructokinase; YP_612366 95.5 0.014 4.8E-07 56.9 5.8 41 464-505 19-59 (208)
136 3uk6_A RUVB-like 2; hexameric 95.5 0.07 2.4E-06 56.5 11.7 57 464-522 67-129 (368)
137 3thx_A DNA mismatch repair pro 95.5 0.068 2.3E-06 63.8 12.4 29 464-492 659-687 (934)
138 4f4c_A Multidrug resistance pr 95.5 0.056 1.9E-06 67.4 12.3 31 458-488 434-465 (1321)
139 3vfd_A Spastin; ATPase, microt 95.5 0.084 2.9E-06 56.7 12.2 36 466-505 147-182 (389)
140 3uie_A Adenylyl-sulfate kinase 95.4 0.016 5.6E-07 56.0 5.8 39 464-503 22-60 (200)
141 1zp6_A Hypothetical protein AT 95.4 0.0079 2.7E-07 57.4 3.5 40 462-505 4-43 (191)
142 1yqt_A RNAse L inhibitor; ATP- 95.4 0.061 2.1E-06 60.5 11.3 44 578-630 174-217 (538)
143 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.012 4.1E-07 59.7 5.0 38 466-504 3-40 (260)
144 3j16_B RLI1P; ribosome recycli 95.4 0.027 9.3E-07 64.1 8.2 26 464-489 100-125 (608)
145 2ce7_A Cell division protein F 95.4 0.067 2.3E-06 59.1 11.1 35 464-504 48-82 (476)
146 3zq6_A Putative arsenical pump 95.3 0.021 7.1E-07 59.9 6.5 39 468-507 15-53 (324)
147 2w58_A DNAI, primosome compone 95.3 0.014 4.6E-07 56.4 4.7 37 468-505 55-91 (202)
148 1rz3_A Hypothetical protein rb 95.3 0.019 6.4E-07 55.6 5.7 42 464-506 19-60 (201)
149 2woj_A ATPase GET3; tail-ancho 95.2 0.017 6E-07 61.3 5.7 50 457-507 8-59 (354)
150 1yrb_A ATP(GTP)binding protein 95.2 0.017 6E-07 58.0 5.4 41 464-506 11-51 (262)
151 2ck3_D ATP synthase subunit be 95.2 0.025 8.7E-07 61.8 6.8 65 447-511 133-197 (482)
152 3qf4_A ABC transporter, ATP-bi 95.1 0.091 3.1E-06 59.8 11.7 32 457-488 358-390 (587)
153 4b3f_X DNA-binding protein smu 95.1 0.019 6.6E-07 66.1 6.1 53 464-517 202-255 (646)
154 1xjc_A MOBB protein homolog; s 95.1 0.025 8.6E-07 53.4 5.7 37 469-506 6-42 (169)
155 3l0o_A Transcription terminati 95.1 0.037 1.3E-06 58.9 7.4 63 449-511 157-220 (427)
156 3te6_A Regulatory protein SIR3 95.1 0.22 7.5E-06 51.9 13.3 58 465-522 43-108 (318)
157 2pez_A Bifunctional 3'-phospho 95.0 0.025 8.5E-07 53.5 5.7 38 465-503 3-40 (179)
158 3end_A Light-independent proto 95.0 0.021 7.3E-07 59.1 5.7 41 466-507 40-80 (307)
159 3thx_B DNA mismatch repair pro 95.0 0.055 1.9E-06 64.4 9.7 29 464-492 670-698 (918)
160 3qf4_B Uncharacterized ABC tra 95.0 0.017 5.6E-07 66.1 5.1 32 457-488 370-402 (598)
161 1m7g_A Adenylylsulfate kinase; 95.0 0.025 8.7E-07 55.1 5.7 40 464-503 22-61 (211)
162 1l8q_A Chromosomal replication 95.0 0.018 6E-07 60.2 4.8 39 466-505 36-74 (324)
163 1fx0_B ATP synthase beta chain 95.0 0.024 8.3E-07 62.2 5.9 65 447-511 145-209 (498)
164 3ux8_A Excinuclease ABC, A sub 94.9 0.074 2.5E-06 61.5 10.4 32 457-488 337-369 (670)
165 2qgz_A Helicase loader, putati 94.9 0.024 8.3E-07 59.0 5.7 38 467-505 152-190 (308)
166 2yl4_A ATP-binding cassette SU 94.9 0.039 1.3E-06 62.9 7.9 33 457-489 359-392 (595)
167 3cf2_A TER ATPase, transitiona 94.9 0.031 1.1E-06 65.4 7.1 36 463-502 507-542 (806)
168 2v3c_C SRP54, signal recogniti 94.9 0.017 5.8E-07 63.1 4.4 38 468-506 100-137 (432)
169 3iqw_A Tail-anchored protein t 94.9 0.021 7.3E-07 60.1 5.0 40 467-507 16-55 (334)
170 3d8b_A Fidgetin-like protein 1 94.9 0.12 4E-06 54.9 10.9 35 466-504 116-150 (357)
171 1z6g_A Guanylate kinase; struc 94.8 0.013 4.5E-07 57.7 3.2 35 457-491 12-47 (218)
172 2vf7_A UVRA2, excinuclease ABC 94.8 0.066 2.3E-06 63.1 9.5 29 458-486 513-542 (842)
173 2o8b_B DNA mismatch repair pro 94.8 0.091 3.1E-06 63.5 10.8 27 467-493 789-815 (1022)
174 3io3_A DEHA2D07832P; chaperone 94.8 0.027 9.3E-07 59.6 5.6 49 457-506 8-58 (348)
175 3bfv_A CAPA1, CAPB2, membrane 94.8 0.036 1.2E-06 56.5 6.4 40 467-507 82-122 (271)
176 3ug7_A Arsenical pump-driving 94.7 0.026 9E-07 59.8 5.5 42 465-507 24-65 (349)
177 1ihu_A Arsenical pump-driving 94.7 0.03 1E-06 63.8 6.2 41 466-507 7-47 (589)
178 2qm8_A GTPase/ATPase; G protei 94.7 0.034 1.1E-06 58.7 6.2 49 457-506 44-93 (337)
179 2va8_A SSO2462, SKI2-type heli 94.7 0.16 5.4E-06 59.1 12.5 52 464-515 43-95 (715)
180 4dzz_A Plasmid partitioning pr 94.7 0.025 8.6E-07 54.5 4.7 38 469-507 4-41 (206)
181 3cio_A ETK, tyrosine-protein k 94.7 0.037 1.3E-06 57.3 6.2 40 467-507 104-144 (299)
182 2woo_A ATPase GET3; tail-ancho 94.6 0.03 1E-06 58.8 5.6 40 467-507 19-58 (329)
183 1nks_A Adenylate kinase; therm 94.6 0.028 9.6E-07 53.4 4.9 34 469-503 3-36 (194)
184 1ihu_A Arsenical pump-driving 94.6 0.075 2.6E-06 60.5 9.2 52 455-507 312-366 (589)
185 3tr0_A Guanylate kinase, GMP k 94.6 0.019 6.5E-07 55.4 3.7 27 464-490 4-30 (205)
186 1kgd_A CASK, peripheral plasma 94.6 0.019 6.4E-07 54.6 3.6 26 465-490 3-28 (180)
187 1z6t_A APAF-1, apoptotic prote 94.6 0.085 2.9E-06 59.8 9.7 50 466-515 146-199 (591)
188 1lv7_A FTSH; alpha/beta domain 94.6 0.1 3.5E-06 52.3 9.3 32 469-504 47-78 (257)
189 3vaa_A Shikimate kinase, SK; s 94.6 0.022 7.6E-07 54.9 4.1 28 464-491 22-49 (199)
190 1kht_A Adenylate kinase; phosp 94.6 0.023 7.7E-07 54.0 4.1 37 467-504 3-39 (192)
191 4aby_A DNA repair protein RECN 94.6 0.076 2.6E-06 57.4 8.8 35 454-489 47-82 (415)
192 2qp9_X Vacuolar protein sortin 94.6 0.17 5.8E-06 53.6 11.3 34 466-503 83-116 (355)
193 2j41_A Guanylate kinase; GMP, 94.6 0.02 6.9E-07 55.2 3.7 27 464-490 3-29 (207)
194 3oiy_A Reverse gyrase helicase 94.5 0.085 2.9E-06 56.9 8.9 115 464-592 33-151 (414)
195 1g3q_A MIND ATPase, cell divis 94.5 0.034 1.2E-06 54.9 5.3 38 469-507 5-42 (237)
196 1hyq_A MIND, cell division inh 94.5 0.039 1.3E-06 55.6 5.8 38 469-507 5-42 (263)
197 2obl_A ESCN; ATPase, hydrolase 94.5 0.024 8.1E-07 60.1 4.3 42 449-490 53-94 (347)
198 1qhx_A CPT, protein (chloramph 94.5 0.025 8.4E-07 53.2 4.0 34 467-504 3-36 (178)
199 3p32_A Probable GTPase RV1496/ 94.4 0.036 1.2E-06 58.9 5.7 41 467-508 79-119 (355)
200 2eyu_A Twitching motility prot 94.4 0.05 1.7E-06 55.1 6.5 46 457-503 16-61 (261)
201 2ph1_A Nucleotide-binding prot 94.3 0.041 1.4E-06 55.6 5.5 39 469-508 21-59 (262)
202 3q9l_A Septum site-determining 94.3 0.041 1.4E-06 55.1 5.4 37 469-506 5-41 (260)
203 2pl3_A Probable ATP-dependent 94.2 0.096 3.3E-06 51.6 8.0 56 461-516 55-118 (236)
204 3tau_A Guanylate kinase, GMP k 94.2 0.026 8.9E-07 55.0 3.7 26 465-490 6-31 (208)
205 1znw_A Guanylate kinase, GMP k 94.2 0.026 8.8E-07 54.9 3.6 27 464-490 17-43 (207)
206 3aez_A Pantothenate kinase; tr 94.2 0.039 1.3E-06 57.5 5.2 42 464-505 87-129 (312)
207 3fwy_A Light-independent proto 94.2 0.043 1.5E-06 57.2 5.4 42 464-506 45-86 (314)
208 1np6_A Molybdopterin-guanine d 94.2 0.05 1.7E-06 51.6 5.4 38 468-506 7-44 (174)
209 1s96_A Guanylate kinase, GMP k 94.2 0.027 9.1E-07 55.6 3.6 27 464-490 13-39 (219)
210 2dpy_A FLII, flagellum-specifi 94.1 0.035 1.2E-06 60.7 4.9 42 449-490 139-180 (438)
211 2p67_A LAO/AO transport system 94.1 0.059 2E-06 56.9 6.4 44 464-508 53-96 (341)
212 4eun_A Thermoresistant glucoki 94.1 0.032 1.1E-06 53.8 4.1 28 464-491 26-53 (200)
213 2a5y_B CED-4; apoptosis; HET: 94.1 0.25 8.7E-06 55.5 12.1 54 467-520 152-212 (549)
214 2afh_E Nitrogenase iron protei 94.1 0.045 1.5E-06 56.1 5.4 38 469-507 4-41 (289)
215 3fgn_A Dethiobiotin synthetase 94.1 0.33 1.1E-05 48.7 11.6 131 468-631 28-167 (251)
216 3la6_A Tyrosine-protein kinase 94.1 0.044 1.5E-06 56.3 5.2 38 469-507 95-132 (286)
217 2qor_A Guanylate kinase; phosp 94.1 0.029 9.9E-07 54.4 3.7 28 464-491 9-36 (204)
218 1cp2_A CP2, nitrogenase iron p 94.1 0.041 1.4E-06 55.6 4.9 38 469-507 3-40 (269)
219 1tue_A Replication protein E1; 94.1 0.028 9.6E-07 54.6 3.4 34 458-491 48-82 (212)
220 3fkq_A NTRC-like two-domain pr 94.0 0.045 1.5E-06 58.5 5.4 36 469-505 146-181 (373)
221 2v9p_A Replication protein E1; 94.0 0.032 1.1E-06 57.9 3.9 36 456-491 114-150 (305)
222 1nn5_A Similar to deoxythymidy 94.0 0.06 2E-06 52.1 5.8 38 465-503 7-44 (215)
223 3ea0_A ATPase, para family; al 93.9 0.046 1.6E-06 54.2 4.8 39 469-507 7-45 (245)
224 2rhm_A Putative kinase; P-loop 93.9 0.039 1.3E-06 52.5 4.1 27 465-491 3-29 (193)
225 3kjh_A CO dehydrogenase/acetyl 93.9 0.026 8.8E-07 56.1 2.9 36 471-507 4-39 (254)
226 2r2a_A Uncharacterized protein 93.9 0.031 1.1E-06 54.3 3.3 37 468-505 6-48 (199)
227 3cwq_A Para family chromosome 93.8 0.048 1.6E-06 53.2 4.7 37 469-507 3-39 (209)
228 2ck3_A ATP synthase subunit al 93.8 0.096 3.3E-06 57.7 7.5 66 447-512 142-214 (510)
229 2axn_A 6-phosphofructo-2-kinas 93.8 0.23 7.9E-06 55.5 10.7 39 467-506 35-73 (520)
230 1htw_A HI0065; nucleotide-bind 93.8 0.037 1.3E-06 51.6 3.6 28 464-491 30-57 (158)
231 1wb9_A DNA mismatch repair pro 93.8 0.11 3.6E-06 61.2 8.3 28 465-492 605-632 (800)
232 1ypw_A Transitional endoplasmi 93.8 0.34 1.2E-05 57.1 12.7 37 463-503 234-270 (806)
233 1knq_A Gluconate kinase; ALFA/ 93.7 0.043 1.5E-06 51.5 4.0 26 465-490 6-31 (175)
234 1sxj_E Activator 1 40 kDa subu 93.7 0.094 3.2E-06 55.1 7.0 23 470-492 39-61 (354)
235 1lvg_A Guanylate kinase, GMP k 93.6 0.031 1.1E-06 54.0 2.9 27 465-491 2-28 (198)
236 3g5u_A MCG1178, multidrug resi 93.6 0.08 2.7E-06 65.8 7.1 32 457-488 1048-1080(1284)
237 2jlq_A Serine protease subunit 93.5 0.43 1.5E-05 52.2 12.2 56 464-523 16-72 (451)
238 2p6r_A Afuhel308 helicase; pro 93.5 0.084 2.9E-06 61.4 6.8 140 464-629 37-180 (702)
239 2wwf_A Thymidilate kinase, put 93.5 0.082 2.8E-06 51.0 5.7 39 464-503 7-45 (212)
240 2zj8_A DNA helicase, putative 93.5 0.27 9.1E-06 57.3 11.0 139 464-629 36-177 (720)
241 2oze_A ORF delta'; para, walke 93.4 0.066 2.3E-06 55.0 5.2 40 467-507 34-76 (298)
242 2pbr_A DTMP kinase, thymidylat 93.4 0.076 2.6E-06 50.4 5.2 34 469-503 2-35 (195)
243 1byi_A Dethiobiotin synthase; 93.4 0.074 2.5E-06 52.0 5.2 34 469-503 4-37 (224)
244 2www_A Methylmalonic aciduria 93.4 0.084 2.9E-06 55.9 6.0 42 466-508 73-114 (349)
245 2plr_A DTMP kinase, probable t 93.4 0.055 1.9E-06 52.2 4.2 35 466-502 3-37 (213)
246 2jeo_A Uridine-cytidine kinase 93.4 0.042 1.4E-06 54.9 3.5 50 456-505 13-67 (245)
247 2z0h_A DTMP kinase, thymidylat 93.4 0.075 2.6E-06 50.6 5.1 34 469-503 2-35 (197)
248 3cm0_A Adenylate kinase; ATP-b 93.3 0.044 1.5E-06 51.9 3.4 26 465-490 2-27 (186)
249 3lw7_A Adenylate kinase relate 93.3 0.059 2E-06 49.9 4.3 27 469-500 3-29 (179)
250 3k9g_A PF-32 protein; ssgcid, 93.3 0.045 1.5E-06 55.3 3.6 38 469-508 30-67 (267)
251 1sq5_A Pantothenate kinase; P- 93.3 0.062 2.1E-06 55.8 4.7 42 465-506 78-120 (308)
252 1wcv_1 SOJ, segregation protei 93.2 0.046 1.6E-06 55.0 3.5 39 468-507 7-46 (257)
253 1kag_A SKI, shikimate kinase I 93.2 0.044 1.5E-06 51.2 3.1 25 466-490 3-27 (173)
254 1gvn_B Zeta; postsegregational 93.2 0.055 1.9E-06 55.6 4.1 37 464-504 30-66 (287)
255 2qt1_A Nicotinamide riboside k 93.2 0.05 1.7E-06 52.7 3.6 37 464-505 18-54 (207)
256 1ly1_A Polynucleotide kinase; 93.2 0.045 1.6E-06 51.3 3.2 32 468-504 3-34 (181)
257 3kb2_A SPBC2 prophage-derived 93.2 0.053 1.8E-06 50.4 3.7 23 469-491 3-25 (173)
258 3lnc_A Guanylate kinase, GMP k 93.2 0.032 1.1E-06 55.2 2.1 25 464-488 24-48 (231)
259 3ney_A 55 kDa erythrocyte memb 93.1 0.052 1.8E-06 52.5 3.5 26 465-490 17-42 (197)
260 1qvr_A CLPB protein; coiled co 93.1 0.19 6.5E-06 59.8 9.1 37 468-504 192-234 (854)
261 2cbz_A Multidrug resistance-as 93.1 0.037 1.3E-06 55.2 2.5 32 457-488 20-52 (237)
262 2bdt_A BH3686; alpha-beta prot 93.0 0.042 1.4E-06 52.3 2.8 23 467-489 2-24 (189)
263 3jvv_A Twitching mobility prot 93.0 0.098 3.4E-06 55.5 5.9 42 464-507 120-161 (356)
264 2r9v_A ATP synthase subunit al 93.0 0.078 2.7E-06 58.3 5.1 66 446-512 154-219 (515)
265 2xj4_A MIPZ; replication, cell 93.0 0.073 2.5E-06 54.5 4.7 37 469-506 7-43 (286)
266 2ewv_A Twitching motility prot 92.8 0.11 3.7E-06 55.5 5.9 39 464-502 133-171 (372)
267 2qe7_A ATP synthase subunit al 92.8 0.084 2.9E-06 58.0 5.0 66 446-512 141-206 (502)
268 3asz_A Uridine kinase; cytidin 92.8 0.058 2E-06 52.3 3.4 37 465-505 4-40 (211)
269 2zu0_C Probable ATP-dependent 92.7 0.052 1.8E-06 55.2 3.0 33 457-489 35-68 (267)
270 2v54_A DTMP kinase, thymidylat 92.7 0.064 2.2E-06 51.5 3.6 37 465-504 2-38 (204)
271 3hu3_A Transitional endoplasmi 92.7 0.72 2.5E-05 51.0 12.4 37 464-504 235-271 (489)
272 2ze6_A Isopentenyl transferase 92.7 0.066 2.3E-06 53.9 3.7 23 469-491 3-25 (253)
273 1mv5_A LMRA, multidrug resista 92.6 0.043 1.5E-06 54.9 2.3 32 458-489 18-50 (243)
274 1fx0_A ATP synthase alpha chai 92.6 0.085 2.9E-06 58.0 4.8 65 447-512 143-207 (507)
275 2d2e_A SUFC protein; ABC-ATPas 92.6 0.049 1.7E-06 54.8 2.6 33 457-489 18-51 (250)
276 3oaa_A ATP synthase subunit al 92.6 0.1 3.4E-06 57.3 5.2 65 446-511 141-205 (513)
277 3b85_A Phosphate starvation-in 92.6 0.042 1.4E-06 53.7 2.0 27 464-490 19-45 (208)
278 3ld9_A DTMP kinase, thymidylat 92.5 0.14 4.7E-06 50.5 5.8 41 464-505 18-59 (223)
279 3iij_A Coilin-interacting nucl 92.5 0.079 2.7E-06 49.9 3.9 27 465-491 9-35 (180)
280 2pze_A Cystic fibrosis transme 92.5 0.044 1.5E-06 54.4 2.1 33 457-489 23-56 (229)
281 1tev_A UMP-CMP kinase; ploop, 92.5 0.076 2.6E-06 50.3 3.8 24 467-490 3-26 (196)
282 3pg5_A Uncharacterized protein 92.4 0.058 2E-06 57.4 3.1 38 469-507 4-41 (361)
283 2ixe_A Antigen peptide transpo 92.4 0.05 1.7E-06 55.5 2.5 45 578-630 172-216 (271)
284 2c95_A Adenylate kinase 1; tra 92.4 0.086 2.9E-06 50.2 4.0 27 465-491 7-33 (196)
285 3trf_A Shikimate kinase, SK; a 92.4 0.087 3E-06 49.8 4.0 25 467-491 5-29 (185)
286 1a7j_A Phosphoribulokinase; tr 92.4 0.097 3.3E-06 53.9 4.6 39 467-506 5-43 (290)
287 1odf_A YGR205W, hypothetical 3 92.3 0.091 3.1E-06 54.1 4.3 40 465-505 29-71 (290)
288 2p5t_B PEZT; postsegregational 92.3 0.064 2.2E-06 53.9 3.1 38 464-505 29-66 (253)
289 2ghi_A Transport protein; mult 92.3 0.054 1.8E-06 54.9 2.5 33 457-489 35-68 (260)
290 3lv8_A DTMP kinase, thymidylat 92.2 0.19 6.4E-06 50.1 6.3 54 464-518 24-77 (236)
291 3llm_A ATP-dependent RNA helic 92.2 0.23 7.8E-06 49.1 7.0 57 459-515 67-129 (235)
292 2qi9_C Vitamin B12 import ATP- 92.2 0.051 1.7E-06 54.7 2.1 32 457-488 15-47 (249)
293 1y63_A LMAJ004144AAA protein; 92.1 0.1 3.4E-06 49.6 4.0 27 464-490 7-33 (184)
294 3a00_A Guanylate kinase, GMP k 92.1 0.071 2.4E-06 50.8 3.0 25 467-491 1-25 (186)
295 3kta_A Chromosome segregation 92.1 0.099 3.4E-06 49.2 4.0 26 464-490 24-49 (182)
296 3b6e_A Interferon-induced heli 92.0 0.54 1.8E-05 45.0 9.3 40 466-505 47-91 (216)
297 2iyv_A Shikimate kinase, SK; t 92.0 0.11 3.7E-06 49.1 4.1 28 468-499 3-30 (184)
298 4ddu_A Reverse gyrase; topoiso 92.0 0.41 1.4E-05 58.5 10.1 114 464-592 90-208 (1104)
299 3e1s_A Exodeoxyribonuclease V, 91.9 0.15 5.1E-06 57.8 5.8 43 464-507 201-243 (574)
300 4edh_A DTMP kinase, thymidylat 91.9 0.14 4.8E-06 50.1 5.0 37 466-503 5-41 (213)
301 2gk6_A Regulator of nonsense t 91.9 0.15 5.1E-06 58.4 5.8 50 467-516 195-245 (624)
302 2qmh_A HPR kinase/phosphorylas 91.9 0.088 3E-06 50.9 3.2 25 466-490 33-57 (205)
303 3t61_A Gluconokinase; PSI-biol 91.8 0.1 3.4E-06 50.2 3.7 25 467-491 18-42 (202)
304 3upu_A ATP-dependent DNA helic 91.8 0.17 5.8E-06 55.6 6.0 39 469-508 47-86 (459)
305 2gxq_A Heat resistant RNA depe 91.8 0.48 1.6E-05 45.2 8.6 55 464-518 35-95 (207)
306 2xzl_A ATP-dependent helicase 91.8 0.19 6.5E-06 59.2 6.7 52 466-517 374-426 (802)
307 2v6i_A RNA helicase; membrane, 91.8 0.64 2.2E-05 50.5 10.6 53 466-522 1-54 (431)
308 1aky_A Adenylate kinase; ATP:A 91.8 0.11 3.9E-06 50.6 4.1 26 466-491 3-28 (220)
309 2vli_A Antibiotic resistance p 91.7 0.083 2.8E-06 49.7 3.0 31 466-500 4-34 (183)
310 1svm_A Large T antigen; AAA+ f 91.7 0.1 3.5E-06 55.8 3.9 33 458-490 159-192 (377)
311 1gtv_A TMK, thymidylate kinase 91.7 0.05 1.7E-06 52.7 1.4 34 469-503 2-35 (214)
312 1p9r_A General secretion pathw 91.7 0.099 3.4E-06 56.7 3.9 43 458-502 159-201 (418)
313 4fcw_A Chaperone protein CLPB; 91.7 0.11 3.7E-06 53.5 4.1 38 467-505 47-84 (311)
314 4ag6_A VIRB4 ATPase, type IV s 91.7 0.17 5.7E-06 54.4 5.7 48 466-514 34-81 (392)
315 4eaq_A DTMP kinase, thymidylat 91.5 0.14 4.9E-06 50.6 4.6 36 464-501 23-58 (229)
316 3ly5_A ATP-dependent RNA helic 91.5 0.24 8.1E-06 49.9 6.2 54 464-517 88-148 (262)
317 2cdn_A Adenylate kinase; phosp 91.4 0.13 4.6E-06 49.3 4.2 30 466-499 19-48 (201)
318 1zuh_A Shikimate kinase; alpha 91.4 0.16 5.5E-06 47.1 4.5 29 468-500 8-36 (168)
319 2bbw_A Adenylate kinase 4, AK4 91.4 0.13 4.4E-06 51.3 4.1 26 466-491 26-51 (246)
320 2chg_A Replication factor C sm 91.4 0.094 3.2E-06 50.4 3.0 26 469-494 40-65 (226)
321 3tqc_A Pantothenate kinase; bi 91.3 0.14 4.7E-06 53.5 4.3 38 469-506 94-132 (321)
322 2bwj_A Adenylate kinase 5; pho 91.3 0.13 4.5E-06 49.0 3.9 27 465-491 10-36 (199)
323 3sqw_A ATP-dependent RNA helic 91.2 2.7 9.3E-05 47.2 15.5 144 466-629 59-221 (579)
324 3g5u_A MCG1178, multidrug resi 91.2 0.15 5.1E-06 63.4 5.1 32 457-488 405-437 (1284)
325 2yv5_A YJEQ protein; hydrolase 91.1 0.12 4.2E-06 53.4 3.8 31 458-488 156-186 (302)
326 2fna_A Conserved hypothetical 91.1 0.35 1.2E-05 50.3 7.4 34 468-505 31-64 (357)
327 2x8a_A Nuclear valosin-contain 91.1 0.18 6E-06 51.4 4.8 35 464-504 43-77 (274)
328 2bjv_A PSP operon transcriptio 91.1 0.12 4.3E-06 51.9 3.7 41 465-506 27-67 (265)
329 2bbs_A Cystic fibrosis transme 91.1 0.087 3E-06 54.2 2.5 31 458-488 54-85 (290)
330 3n70_A Transport activator; si 91.0 0.084 2.9E-06 48.1 2.1 38 465-504 22-59 (145)
331 2c61_A A-type ATP synthase non 91.0 0.12 4.2E-06 56.4 3.6 65 447-511 132-199 (469)
332 3dkp_A Probable ATP-dependent 90.9 0.45 1.5E-05 47.0 7.6 54 464-517 63-120 (245)
333 1njg_A DNA polymerase III subu 90.8 0.17 5.9E-06 49.1 4.3 26 468-493 46-71 (250)
334 2jaq_A Deoxyguanosine kinase; 90.8 0.14 5E-06 48.8 3.7 23 469-491 2-24 (205)
335 3gd7_A Fusion complex of cysti 90.8 0.11 3.8E-06 55.7 3.1 33 457-489 36-69 (390)
336 3i5x_A ATP-dependent RNA helic 90.8 3 0.0001 46.5 15.2 144 466-629 110-272 (563)
337 3umf_A Adenylate kinase; rossm 90.7 0.17 5.7E-06 49.7 4.1 35 464-504 26-60 (217)
338 1t9h_A YLOQ, probable GTPase E 90.6 0.055 1.9E-06 56.2 0.5 32 458-489 164-195 (307)
339 1uj2_A Uridine-cytidine kinase 90.6 0.15 5.3E-06 51.0 3.8 38 468-505 23-64 (252)
340 1qf9_A UMP/CMP kinase, protein 90.6 0.16 5.4E-06 48.0 3.7 24 468-491 7-30 (194)
341 1via_A Shikimate kinase; struc 90.6 0.15 5E-06 47.8 3.5 23 469-491 6-28 (175)
342 3vr4_D V-type sodium ATPase su 90.5 0.14 4.8E-06 55.7 3.6 65 447-511 131-198 (465)
343 2gza_A Type IV secretion syste 90.5 0.1 3.5E-06 55.5 2.5 28 464-491 172-199 (361)
344 3ez2_A Plasmid partition prote 90.5 0.19 6.4E-06 54.1 4.6 39 469-507 111-154 (398)
345 3a8t_A Adenylate isopentenyltr 90.4 0.15 5.1E-06 53.5 3.5 35 465-505 38-72 (339)
346 1e6c_A Shikimate kinase; phosp 90.4 0.15 5.1E-06 47.4 3.3 28 468-499 3-30 (173)
347 2i3b_A HCR-ntpase, human cance 90.3 0.19 6.5E-06 48.2 4.0 29 467-496 1-29 (189)
348 2qag_B Septin-6, protein NEDD5 90.3 0.15 5.2E-06 55.2 3.6 32 458-489 30-64 (427)
349 1zak_A Adenylate kinase; ATP:A 90.2 0.17 5.9E-06 49.4 3.7 26 466-491 4-29 (222)
350 3nwj_A ATSK2; P loop, shikimat 90.2 0.12 4.2E-06 51.9 2.6 35 457-491 34-72 (250)
351 4e22_A Cytidylate kinase; P-lo 90.2 0.17 5.7E-06 50.8 3.6 27 464-490 24-50 (252)
352 2wjy_A Regulator of nonsense t 90.2 0.27 9.1E-06 57.9 5.9 50 467-516 371-421 (800)
353 1zd8_A GTP:AMP phosphotransfer 90.2 0.18 6E-06 49.5 3.8 25 466-490 6-30 (227)
354 3fb4_A Adenylate kinase; psych 90.2 0.18 6.1E-06 48.9 3.7 23 469-491 2-24 (216)
355 3vr4_A V-type sodium ATPase ca 90.2 0.41 1.4E-05 53.3 6.9 65 446-513 211-275 (600)
356 3gqb_B V-type ATP synthase bet 90.1 0.15 5.3E-06 55.3 3.5 66 446-511 126-201 (464)
357 2pjz_A Hypothetical protein ST 90.0 0.12 4E-06 52.4 2.3 32 458-490 21-53 (263)
358 3v9p_A DTMP kinase, thymidylat 90.0 0.3 1E-05 48.2 5.3 40 464-503 22-64 (227)
359 1sxj_C Activator 1 40 kDa subu 90.0 0.14 4.9E-06 53.6 3.1 30 464-493 41-72 (340)
360 4tmk_A Protein (thymidylate ki 89.9 0.43 1.5E-05 46.6 6.2 38 466-505 2-40 (213)
361 3exa_A TRNA delta(2)-isopenten 89.9 0.28 9.4E-06 50.9 5.0 33 467-505 3-35 (322)
362 1d2n_A N-ethylmaleimide-sensit 89.9 0.27 9.3E-06 49.6 5.0 34 466-503 63-96 (272)
363 1ofh_A ATP-dependent HSL prote 89.9 0.29 9.8E-06 50.1 5.2 35 467-505 50-84 (310)
364 3tlx_A Adenylate kinase 2; str 89.8 0.21 7.3E-06 49.7 4.1 28 464-491 26-53 (243)
365 3iuy_A Probable ATP-dependent 89.8 0.59 2E-05 45.5 7.3 42 464-505 54-103 (228)
366 3be4_A Adenylate kinase; malar 89.8 0.2 6.7E-06 48.9 3.7 26 466-491 4-29 (217)
367 1cke_A CK, MSSA, protein (cyti 89.6 0.24 8.1E-06 48.3 4.2 24 467-490 5-28 (227)
368 3ber_A Probable ATP-dependent 89.6 1.1 3.9E-05 44.4 9.2 55 461-515 73-131 (249)
369 2npi_A Protein CLP1; CLP1-PCF1 89.5 0.22 7.4E-06 54.8 4.1 40 464-504 135-175 (460)
370 2whx_A Serine protease/ntpase/ 89.5 2.1 7.2E-05 48.7 12.5 57 462-522 180-238 (618)
371 2pt5_A Shikimate kinase, SK; a 89.4 0.23 7.8E-06 45.9 3.7 28 469-500 2-29 (168)
372 3sr0_A Adenylate kinase; phosp 89.4 0.23 7.7E-06 48.3 3.7 31 469-505 2-32 (206)
373 2wsm_A Hydrogenase expression/ 89.4 0.3 1E-05 47.3 4.6 37 469-507 32-68 (221)
374 2f1r_A Molybdopterin-guanine d 89.3 0.23 8E-06 46.7 3.7 37 468-505 3-39 (171)
375 1ixz_A ATP-dependent metallopr 89.3 0.18 6.3E-06 50.3 3.2 34 464-503 48-81 (254)
376 2pt7_A CAG-ALFA; ATPase, prote 89.3 0.099 3.4E-06 54.9 1.1 28 464-491 168-195 (330)
377 3u61_B DNA polymerase accessor 89.2 0.43 1.5E-05 49.4 6.1 36 468-507 49-84 (324)
378 1ukz_A Uridylate kinase; trans 89.2 0.25 8.4E-06 47.4 3.9 23 468-490 16-38 (203)
379 1pui_A ENGB, probable GTP-bind 89.2 0.12 4.1E-06 49.7 1.6 32 456-488 16-47 (210)
380 1u0l_A Probable GTPase ENGC; p 89.2 0.15 5.1E-06 52.7 2.4 31 458-488 160-190 (301)
381 1ex7_A Guanylate kinase; subst 89.2 0.21 7.1E-06 47.8 3.2 22 469-490 3-24 (186)
382 3d3q_A TRNA delta(2)-isopenten 89.1 0.19 6.6E-06 52.7 3.2 32 468-505 8-39 (340)
383 3gqb_A V-type ATP synthase alp 89.1 0.4 1.4E-05 53.1 5.8 64 446-512 200-263 (578)
384 2grj_A Dephospho-COA kinase; T 89.1 0.33 1.1E-05 46.6 4.7 29 468-500 13-41 (192)
385 2rcn_A Probable GTPase ENGC; Y 89.1 0.19 6.4E-06 53.2 3.1 30 459-488 207-236 (358)
386 3dl0_A Adenylate kinase; phosp 89.1 0.21 7.3E-06 48.4 3.3 22 469-490 2-23 (216)
387 1ak2_A Adenylate kinase isoenz 89.1 0.28 9.5E-06 48.4 4.2 26 466-491 15-40 (233)
388 3cr8_A Sulfate adenylyltranfer 89.0 0.18 6E-06 56.8 3.0 41 464-504 366-406 (552)
389 4f92_B U5 small nuclear ribonu 89.0 1.3 4.5E-05 56.4 11.2 143 464-629 939-1091(1724)
390 1vec_A ATP-dependent RNA helic 89.0 0.93 3.2E-05 43.2 7.8 42 464-505 37-80 (206)
391 1ojl_A Transcriptional regulat 88.9 0.23 7.9E-06 51.3 3.6 46 465-511 23-68 (304)
392 1gku_B Reverse gyrase, TOP-RG; 88.9 0.47 1.6E-05 57.7 6.8 115 464-593 68-188 (1054)
393 3fe2_A Probable ATP-dependent 88.8 0.6 2E-05 46.1 6.4 42 464-505 63-111 (242)
394 2xb4_A Adenylate kinase; ATP-b 88.7 0.26 8.8E-06 48.3 3.7 23 469-491 2-24 (223)
395 2z83_A Helicase/nucleoside tri 88.7 0.48 1.7E-05 51.9 6.2 56 464-523 18-74 (459)
396 1ye8_A Protein THEP1, hypothet 88.6 0.24 8.2E-06 46.9 3.2 23 469-491 2-24 (178)
397 1gm5_A RECG; helicase, replica 88.6 0.86 2.9E-05 53.4 8.5 108 468-591 390-501 (780)
398 2if2_A Dephospho-COA kinase; a 88.4 0.24 8.3E-06 47.4 3.2 29 469-502 3-31 (204)
399 1jjv_A Dephospho-COA kinase; P 88.3 0.25 8.4E-06 47.5 3.2 21 469-489 4-24 (206)
400 1ypw_A Transitional endoplasmi 88.3 0.31 1.1E-05 57.5 4.6 38 463-504 507-544 (806)
401 1wp9_A ATP-dependent RNA helic 88.2 0.83 2.8E-05 49.3 7.8 53 469-522 25-78 (494)
402 3r20_A Cytidylate kinase; stru 88.2 0.3 1E-05 48.5 3.7 24 468-491 10-33 (233)
403 2oap_1 GSPE-2, type II secreti 88.2 0.18 6E-06 56.3 2.2 34 458-491 250-284 (511)
404 3foz_A TRNA delta(2)-isopenten 88.2 0.28 9.4E-06 50.8 3.5 33 467-505 10-42 (316)
405 3ez9_A Para; DNA binding, wing 88.1 0.19 6.5E-06 54.1 2.4 39 469-507 114-157 (403)
406 1m8p_A Sulfate adenylyltransfe 88.0 0.41 1.4E-05 54.1 5.1 40 465-505 394-434 (573)
407 3sfz_A APAF-1, apoptotic pepti 87.9 0.69 2.4E-05 56.9 7.7 41 467-507 147-190 (1249)
408 1f2t_A RAD50 ABC-ATPase; DNA d 87.9 0.33 1.1E-05 44.4 3.6 25 464-489 21-45 (149)
409 1qde_A EIF4A, translation init 87.9 0.66 2.3E-05 45.0 6.1 54 464-517 48-104 (224)
410 1e4v_A Adenylate kinase; trans 87.9 0.3 1E-05 47.4 3.5 23 469-491 2-24 (214)
411 3j21_i 50S ribosomal protein L 87.9 0.26 9E-06 40.0 2.5 27 141-179 35-61 (83)
412 1hv8_A Putative ATP-dependent 87.9 0.72 2.5E-05 48.0 6.8 50 468-517 45-96 (367)
413 1nij_A Hypothetical protein YJ 87.9 0.26 8.9E-06 51.3 3.2 23 468-490 5-27 (318)
414 1x6v_B Bifunctional 3'-phospho 87.9 0.46 1.6E-05 54.0 5.5 37 466-503 51-87 (630)
415 1ltq_A Polynucleotide kinase; 87.8 0.26 9E-06 50.5 3.2 22 468-489 3-24 (301)
416 2z0m_A 337AA long hypothetical 87.8 0.89 3E-05 46.7 7.3 50 464-517 28-78 (337)
417 3crm_A TRNA delta(2)-isopenten 87.8 0.29 1E-05 51.0 3.5 32 468-505 6-37 (323)
418 1sxj_A Activator 1 95 kDa subu 87.8 0.45 1.5E-05 53.1 5.3 37 466-506 76-112 (516)
419 1iy2_A ATP-dependent metallopr 87.8 0.27 9.2E-06 49.9 3.2 34 464-503 72-105 (278)
420 3zvl_A Bifunctional polynucleo 87.8 0.25 8.6E-06 53.5 3.2 25 465-489 256-280 (416)
421 1r6b_X CLPA protein; AAA+, N-t 87.7 2.5 8.5E-05 49.3 11.8 29 466-494 206-234 (758)
422 3mfy_A V-type ATP synthase alp 87.6 0.36 1.2E-05 53.6 4.2 63 447-512 207-269 (588)
423 2vp4_A Deoxynucleoside kinase; 87.6 0.2 6.9E-06 49.4 2.1 34 464-502 17-50 (230)
424 1uf9_A TT1252 protein; P-loop, 87.5 0.29 1E-05 46.6 3.2 22 468-489 9-30 (203)
425 1vht_A Dephospho-COA kinase; s 87.4 0.33 1.1E-05 47.1 3.5 23 467-489 4-26 (218)
426 2v1x_A ATP-dependent DNA helic 87.4 1.7 5.8E-05 49.2 9.9 112 464-593 56-178 (591)
427 1um8_A ATP-dependent CLP prote 87.3 0.44 1.5E-05 50.6 4.7 34 467-504 72-105 (376)
428 3tqf_A HPR(Ser) kinase; transf 87.2 0.36 1.2E-05 45.5 3.3 24 466-489 15-38 (181)
429 1q3t_A Cytidylate kinase; nucl 87.2 0.43 1.5E-05 47.1 4.2 27 464-490 13-39 (236)
430 4a17_Y RPL37A, 60S ribosomal p 87.2 0.32 1.1E-05 41.0 2.6 28 140-179 35-62 (103)
431 1hqc_A RUVB; extended AAA-ATPa 87.1 0.44 1.5E-05 49.2 4.4 35 467-505 38-72 (324)
432 3eph_A TRNA isopentenyltransfe 87.1 0.37 1.3E-05 51.6 3.9 24 468-491 3-26 (409)
433 3pfi_A Holliday junction ATP-d 87.0 0.44 1.5E-05 49.6 4.4 33 468-504 56-88 (338)
434 1e9r_A Conjugal transfer prote 87.0 0.56 1.9E-05 50.9 5.4 38 468-506 54-91 (437)
435 2gks_A Bifunctional SAT/APS ki 87.0 0.42 1.4E-05 53.6 4.5 49 456-505 355-409 (546)
436 3hws_A ATP-dependent CLP prote 87.0 0.48 1.6E-05 50.1 4.7 35 466-504 50-84 (363)
437 1in4_A RUVB, holliday junction 86.9 0.38 1.3E-05 50.3 3.8 24 468-491 52-75 (334)
438 2gj8_A MNME, tRNA modification 86.7 0.37 1.3E-05 44.8 3.2 23 466-488 3-25 (172)
439 1wrb_A DJVLGB; RNA helicase, D 86.7 1 3.5E-05 44.6 6.8 53 464-516 57-121 (253)
440 3ake_A Cytidylate kinase; CMP 86.7 0.42 1.4E-05 45.7 3.7 23 469-491 4-26 (208)
441 3lfu_A DNA helicase II; SF1 he 86.6 0.74 2.5E-05 52.6 6.4 52 467-518 22-77 (647)
442 3m6a_A ATP-dependent protease 86.5 0.4 1.4E-05 53.8 4.0 35 466-504 107-141 (543)
443 2i4i_A ATP-dependent RNA helic 86.3 1.7 5.8E-05 46.2 8.7 26 464-489 49-74 (417)
444 2zan_A Vacuolar protein sortin 86.3 0.51 1.7E-05 51.5 4.5 39 464-505 164-202 (444)
445 2hf9_A Probable hydrogenase ni 86.2 0.49 1.7E-05 45.9 4.0 38 468-507 39-76 (226)
446 3of5_A Dethiobiotin synthetase 86.0 0.74 2.5E-05 45.4 5.2 34 469-503 7-40 (228)
447 1tq4_A IIGP1, interferon-induc 85.9 0.3 1E-05 52.8 2.4 21 469-489 71-91 (413)
448 2c9o_A RUVB-like 1; hexameric 85.8 0.72 2.5E-05 50.5 5.5 39 464-504 60-98 (456)
449 2dhr_A FTSH; AAA+ protein, hex 85.7 0.59 2E-05 51.8 4.7 36 464-505 63-98 (499)
450 2f6r_A COA synthase, bifunctio 85.6 0.41 1.4E-05 48.8 3.2 28 468-500 76-103 (281)
451 3pvs_A Replication-associated 85.5 0.99 3.4E-05 49.3 6.3 35 469-507 52-86 (447)
452 1t6n_A Probable ATP-dependent 85.4 2.3 7.9E-05 40.9 8.4 42 464-505 48-91 (220)
453 1w36_D RECD, exodeoxyribonucle 85.4 0.73 2.5E-05 52.5 5.4 40 466-505 163-205 (608)
454 3eiq_A Eukaryotic initiation f 85.3 1.2 4.3E-05 47.2 7.0 54 464-517 74-130 (414)
455 4a8j_A Elongator complex prote 85.2 0.31 1.1E-05 51.2 2.1 89 564-664 199-291 (361)
456 3bor_A Human initiation factor 85.2 0.64 2.2E-05 45.7 4.3 52 464-515 64-118 (237)
457 2r62_A Cell division protease 85.1 0.26 9E-06 49.5 1.4 22 470-491 47-68 (268)
458 4f92_B U5 small nuclear ribonu 85.0 5.6 0.00019 50.7 13.7 153 454-629 76-252 (1724)
459 2ocp_A DGK, deoxyguanosine kin 84.9 0.56 1.9E-05 46.4 3.7 26 466-491 1-26 (241)
460 3iz5_m 60S ribosomal protein L 84.9 0.34 1.2E-05 40.2 1.7 27 141-179 36-62 (92)
461 3qks_A DNA double-strand break 84.9 0.56 1.9E-05 45.3 3.6 27 464-491 21-47 (203)
462 3euj_A Chromosome partition pr 84.9 0.42 1.4E-05 52.6 3.0 36 454-490 16-52 (483)
463 2ga8_A Hypothetical 39.9 kDa p 84.9 0.59 2E-05 49.2 4.0 29 464-492 19-49 (359)
464 1sxj_D Activator 1 41 kDa subu 84.8 0.79 2.7E-05 47.7 5.0 36 470-505 61-98 (353)
465 2r44_A Uncharacterized protein 84.5 0.72 2.5E-05 47.8 4.5 37 464-504 43-79 (331)
466 3tmk_A Thymidylate kinase; pho 84.5 0.72 2.5E-05 45.1 4.2 27 465-491 3-29 (216)
467 1s2m_A Putative ATP-dependent 84.5 0.76 2.6E-05 48.7 4.8 53 464-516 55-110 (400)
468 4a82_A Cystic fibrosis transme 84.5 0.35 1.2E-05 54.7 2.3 32 457-488 356-388 (578)
469 3co5_A Putative two-component 84.4 0.24 8.3E-06 44.8 0.7 25 465-489 25-49 (143)
470 2wji_A Ferrous iron transport 84.4 0.51 1.7E-05 43.3 3.0 20 469-488 5-24 (165)
471 1jr3_A DNA polymerase III subu 84.4 0.69 2.4E-05 48.6 4.4 25 468-492 39-63 (373)
472 1lw7_A Transcriptional regulat 84.2 0.41 1.4E-05 50.8 2.5 27 464-490 165-193 (365)
473 1ni3_A YCHF GTPase, YCHF GTP-b 84.2 0.57 1.9E-05 50.2 3.6 29 461-489 13-42 (392)
474 3qf7_A RAD50; ABC-ATPase, ATPa 84.2 0.49 1.7E-05 50.3 3.1 43 579-630 302-344 (365)
475 1z2a_A RAS-related protein RAB 84.1 0.54 1.8E-05 42.7 3.0 20 470-489 8-27 (168)
476 1u0j_A DNA replication protein 84.0 0.74 2.5E-05 46.5 4.1 26 465-490 102-127 (267)
477 4a2p_A RIG-I, retinoic acid in 84.0 2 6.8E-05 47.6 8.2 53 466-518 21-78 (556)
478 3bk7_A ABC transporter ATP-bin 84.0 0.5 1.7E-05 53.7 3.2 26 464-489 114-139 (607)
479 2ce2_X GTPase HRAS; signaling 83.8 0.56 1.9E-05 42.3 3.0 20 470-489 6-25 (166)
480 1a5t_A Delta prime, HOLB; zinc 83.8 0.57 1.9E-05 49.0 3.3 26 468-493 25-50 (334)
481 3izc_m 60S ribosomal protein R 83.7 0.36 1.2E-05 39.9 1.4 28 140-179 35-62 (92)
482 1kao_A RAP2A; GTP-binding prot 83.7 0.57 2E-05 42.4 3.0 20 470-489 6-25 (167)
483 2dyk_A GTP-binding protein; GT 83.6 0.58 2E-05 42.2 3.0 20 470-489 4-23 (161)
484 2vf7_A UVRA2, excinuclease ABC 83.3 0.47 1.6E-05 55.9 2.6 29 464-492 33-61 (842)
485 1oix_A RAS-related protein RAB 83.1 0.61 2.1E-05 44.1 3.0 21 469-489 31-51 (191)
486 1vdd_A Recombination protein R 83.0 4.9 0.00017 38.9 9.2 90 292-388 78-168 (228)
487 2nzj_A GTP-binding protein REM 83.0 0.63 2.2E-05 42.7 3.0 20 470-489 7-26 (175)
488 2zej_A Dardarin, leucine-rich 83.0 0.53 1.8E-05 44.1 2.4 20 470-489 5-24 (184)
489 2eyq_A TRCF, transcription-rep 82.9 1.8 6.1E-05 53.1 7.7 57 464-521 619-678 (1151)
490 2erx_A GTP-binding protein DI- 82.8 0.65 2.2E-05 42.3 3.0 20 470-489 6-25 (172)
491 1u8z_A RAS-related protein RAL 82.8 0.65 2.2E-05 42.0 3.0 20 470-489 7-26 (168)
492 3pxi_A Negative regulator of g 82.7 0.91 3.1E-05 53.1 4.9 36 469-505 523-558 (758)
493 3ozx_A RNAse L inhibitor; ATP 82.7 0.53 1.8E-05 52.7 2.7 26 464-489 22-47 (538)
494 3hjn_A DTMP kinase, thymidylat 82.7 1.4 4.9E-05 42.1 5.5 34 469-503 2-35 (197)
495 3tbk_A RIG-I helicase domain; 82.6 1.6 5.4E-05 48.4 6.6 52 466-517 18-74 (555)
496 2ykg_A Probable ATP-dependent 82.6 2.4 8.2E-05 48.7 8.3 42 464-505 25-70 (696)
497 1g16_A RAS-related protein SEC 82.6 0.66 2.3E-05 42.2 3.0 20 470-489 6-25 (170)
498 3pxg_A Negative regulator of g 82.6 0.71 2.4E-05 50.7 3.6 27 467-493 201-227 (468)
499 1bif_A 6-phosphofructo-2-kinas 82.6 0.95 3.2E-05 49.7 4.7 38 467-505 39-76 (469)
500 1vt4_I APAF-1 related killer D 82.6 2.3 7.8E-05 51.1 8.0 53 465-517 148-204 (1221)
No 1
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=100.00 E-value=2.4e-62 Score=555.26 Aligned_cols=453 Identities=23% Similarity=0.248 Sum_probs=369.2
Q ss_pred HHHHHHHhCCCCHHHHHHccccccCCCCeeEEEEeEe-cCCEEEEEEeecCCCcccc-cCCCCCccccccccCCCCeEEE
Q 005200 221 ELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW-RNGKLVNCKYRDFNKKFWQ-EKDTEKVFYGLDDIEGESDIII 298 (709)
Q Consensus 221 ~~~~YL~~RGI~~~~~~~~~~~~~~~g~~~~i~fP~~-~~G~lv~~~~R~~~kk~~~-~~~~~~~lyg~~~i~~~~~viI 298 (709)
.+.+||.+|||+.+++++|+++........+++||+. .+|+++++++|..+++++. ..++...+||++.+.+.+.|+|
T Consensus 13 ~~~~YL~~Rgi~~~~~~~~~~~~~~~~g~~~i~fp~~d~~G~~~g~~~R~~~~~~ky~~~~k~~~lyg~~~~~~~~~v~i 92 (503)
T 1q57_A 13 GRYSALTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVV 92 (503)
T ss_dssp CBCCCBTTTTBCHHHHHHHTEEECCBTTBCEEEEEEECTTSCEEEEEEEETTTEEEEEECCCTTCEETGGGCSSEEEEEE
T ss_pred HHHHHHHHCCCCHHHHHHcCeEEECCCCcEEEEEEEECCCCCEEEEEeECCCCCceEecCCCCCceECccccCCCCEEEE
Confidence 3678999999999999999987554333467999997 8899999999987654443 1235678999998877778999
Q ss_pred EcChhhHHHHHHh-CCc-eEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCcCEEEEEecCChhhHHHHHHHHH
Q 005200 299 VEGEMDKLSMEEA-GFL-NCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376 (709)
Q Consensus 299 ~EG~~DaLsl~q~-g~~-~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~~~Ivi~~DnD~aG~~aa~~~a~ 376 (709)
|||++|+||++|+ |.. ++++++++... . .+.+.+++++|.++++|++|+|||.||++|++++++
T Consensus 93 ~EG~~D~ls~~~~~g~~~~v~slg~~~~~---------~-----~~~l~~~l~~l~~~~~ivl~~D~D~aG~~aa~~~~~ 158 (503)
T 1q57_A 93 TEGEIDMLTVMELQDCKYPVVSLGHGASA---------A-----KKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQ 158 (503)
T ss_dssp ESSHHHHHHHTTTTTTCSCEEEESSTTTT---------H-----HHHHHTTHHHHHTEEEEEEECCSSHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHhcCCCcEEEECCcccch---------h-----HHHHHHHHHhhcCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 9999999999999 753 46665433321 0 123445567788889999999999999999999999
Q ss_pred HhCCcceEEEEcCCCCCCCCCCCHHHHHHhcCCCccceeeeccccccccccccccccchhhhhhhcccCCCcccccc-cc
Q 005200 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIST-GW 455 (709)
Q Consensus 377 ~l~~~~~~iv~~P~~~~~~~~kD~ND~l~~~g~e~l~~~l~~A~~~~~~~l~~~~d~~~~ie~~~~~~~~~~~gi~t-g~ 455 (709)
.|...+|+++.+| +|||||+|++.|.+++.+++++|.++.+.++.++.++++++++.+. .....|++| ||
T Consensus 159 ~l~~~~~~~~~~p-------~kD~nd~l~~~g~~~~~~~i~~a~~~~~~~i~~~~~~~~~i~~~~~--~~~~~~i~t~G~ 229 (503)
T 1q57_A 159 VLPAGKVRVAVLP-------CKDANECHLNGHDREIMEQVWNAGPWIPDGVVSALSLRERIREHLS--SEESVGLLFSGC 229 (503)
T ss_dssp HSCGGGEEECCCS-------SSSHHHHHTTSCHHHHHHHHTTCCCCCCSSEEEGGGGHHHHHHHHH--HSCTTCSCCSSC
T ss_pred hcccCcEEEEeCC-------CCCHHHHHHhcCHHHHHHHHHhcCCCCHHHhcChHHHHHHHHhhhc--ccccCCccccch
Confidence 9976678777653 7999999999999999999999999999999999999999888763 356789999 99
Q ss_pred hhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccc---cccCC
Q 005200 456 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE---ANYGG 531 (709)
Q Consensus 456 ~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~---i~~g~ 531 (709)
+.||++++ +++|++++|+|+||+|||+|++|++.+++.++|.+|+|||+||+++++..|+++...++++.. ++.|
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~~~~~~~~~~~~g- 308 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKRE- 308 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTTSCCTTCHHHHHH-
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCChhhccccccC-
Confidence 99999999 999999999999999999999999999998668999999999999999999999999998764 4433
Q ss_pred CCCCCCHHHHHHHHHHH-hc-CcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHH
Q 005200 532 SAERMTVEEFEQGKAWL-SN-TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQM 609 (709)
Q Consensus 532 ~~~~l~~e~~~~~~~~l-~~-~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i 609 (709)
.++++++.++.+.+ .. ++++. +..+..++++++..+++++.++++++||||++..+ .......++.+.+.++
T Consensus 309 ---~l~~~~~~~~~~~~~~~~~l~i~--~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l-~~~~~~~~~~~~~~~~ 382 (503)
T 1q57_A 309 ---IIENGKFDQWFDELFGNDTFHLY--DSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIV-VSASGESDERKMIDNL 382 (503)
T ss_dssp ---HHHTSHHHHHHHHHHTTTCEEEE--CCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCC-CSCCSCCCHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHhccCCEEEE--CCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhc-CCCCCCCCHHHHHHHH
Confidence 45556676666555 23 33333 21234689999999999999999999999966544 3322335777889999
Q ss_pred HHHHHHHHHHhCcEEEEEec-cCCCCCC----CCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEeee
Q 005200 610 LTMVKRFAQHHACHVWFVAH-PRQLHNW----VGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 684 (709)
Q Consensus 610 ~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~----~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~R 684 (709)
++.|+.+|+++||+||+++| +| .+.+ .+++|.+++++||+.+++.||+||+|++++..+ ..+.++|.|.|+|
T Consensus 383 ~~~Lk~lak~~~i~vi~~~q~~r-~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r~~~~~--~~~~~~l~v~K~R 459 (503)
T 1q57_A 383 MTKLKGFAKSTGVVLVVICHLKN-PDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQGD--MPNLVLVRILKCR 459 (503)
T ss_dssp HHHHHHHHHHHTCEEEEEEECCC-CSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEECSSSS--CTTEEEEEEEEET
T ss_pred HHHHHHHHHHHCCeEEEEEcCCc-hhccCccccCCCCChhhhccchHhhecCcEEEEEEeCCcCC--CCCeEEEEEEecc
Confidence 99999999999999999999 66 4332 267899999999999999999999999987533 1357899999999
Q ss_pred -CCCcceeeeEEEEEEccccEEEcC
Q 005200 685 -NKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 685 -~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
+|++|.. +.+.|+++++||.++
T Consensus 460 ~~G~~g~~--~~l~f~~~~~~f~~~ 482 (503)
T 1q57_A 460 FTGDTGIA--GYMEYNKETGWLEPS 482 (503)
T ss_dssp TTCCCEEE--EEEEECTTTCCEEEE
T ss_pred CCCCCCce--EEEEEEcCCceEecC
Confidence 7877664 379999999999886
No 2
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=100.00 E-value=5.4e-42 Score=364.48 Aligned_cols=267 Identities=21% Similarity=0.264 Sum_probs=224.6
Q ss_pred cccchhhhhhhcccCCCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHH
Q 005200 431 RDYFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 509 (709)
Q Consensus 431 ~d~~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~ 509 (709)
.++++.+++++....+...|++|||+.||++++ +++|+|++|+|+||+|||+|+++++.+++.+ |.+|+|||+||+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-g~~Vl~fSlEms~~ 87 (338)
T 4a1f_A 9 ESAMDLITENQRKGSLEVTGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND-DRGVAVFSLEMSAE 87 (338)
T ss_dssp HHHHHHHHHHHHHTTTCCCSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCEEEEEESSSCHH
T ss_pred HHHHHHHHHHHhcCCCCcCcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCCCHH
Confidence 345677777765235678999999999999998 9999999999999999999999999999986 99999999999999
Q ss_pred HHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHH---HHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEE
Q 005200 510 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK---AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLV 585 (709)
Q Consensus 510 ~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~---~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~-~~~lIV 585 (709)
++..|+++..++++...++.| .+++++|+++. ..+.+..+++. +.+..++++|.+.+++++.++ ++++||
T Consensus 88 ql~~Rlls~~~~v~~~~l~~g----~Ls~~e~~~l~~a~~~l~~~~l~I~--d~~~~si~~i~~~ir~l~~~~gg~~lIV 161 (338)
T 4a1f_A 88 QLALRALSDLTSINMHDLESG----RLDDDQWENLAKCFDHLSQKKLFFY--DKSYVRIEQIRLQLRKLKSQHKELGIAF 161 (338)
T ss_dssp HHHHHHHHHHHCCCHHHHHHT----CCCHHHHHHHHHHHHHHHHSCEEEE--CCTTCCHHHHHHHHHHHHHHCTTEEEEE
T ss_pred HHHHHHHHHhhCCCHHHHhcC----CCCHHHHHHHHHHHHHHhcCCeEEe--CCCCCcHHHHHHHHHHHHHhcCCCCEEE
Confidence 999999999999999999876 79999988754 44555444442 245568999999999999888 899999
Q ss_pred EccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEee
Q 005200 586 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664 (709)
Q Consensus 586 ID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r 664 (709)
|| |++++.......++.+++.++++.|+.||+++||+||+++| +|..+++.+++|.++||+||++|+|.||+||+|+|
T Consensus 162 ID-yLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~r~dkrP~lsDLreSg~IeqdAD~Vl~l~R 240 (338)
T 4a1f_A 162 ID-YLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQDADIVLFLYR 240 (338)
T ss_dssp EE-EEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGGSSSCSCCGGGSEETTEECCCCSEEEEEEC
T ss_pred Ee-chHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCccccccccCCCChHhcccchhhhhhCcEEEEEec
Confidence 99 66776532111222346889999999999999999999999 88888888899999999999999999999999999
Q ss_pred CCCC--------------CC----------------------CCCCeEEEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005200 665 NRDP--------------EA----------------------GPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 665 ~~~~--------------e~----------------------~~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
++.. +. ...+.++|+|.|+|||++|.+ .|.|+++++||.+.
T Consensus 241 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiiiaK~R~G~~g~v---~l~f~~~~~~F~~~ 317 (338)
T 4a1f_A 241 GYIYQMRAEDNKIDKLKKEGKIEEAQELYLKVNEERRIHKQNGSIEEAEIIVAKNRNGATGTV---YTRFNAPFTRYEDM 317 (338)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTSCCEEE---EEEEEGGGTEECCC
T ss_pred chhcccccccccccccccccccccccchhhhhhhhhcccccccCCCceEEEEEeccCCCCceE---EEEEccccceeccc
Confidence 8511 11 125679999999999888775 79999999999875
No 3
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=100.00 E-value=3e-38 Score=336.02 Aligned_cols=271 Identities=17% Similarity=0.227 Sum_probs=217.9
Q ss_pred cccccccchhhhhhhcccCCCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 427 LFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 427 l~~~~d~~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
..++.++.+++-+.+++..+...|++|||+.||++++ +++|++++|+|+||+|||+|++|++.+++.+ |.+|+|||+|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g~~vl~~slE 105 (315)
T 3bh0_A 27 DGSIDEALVTVYEEIESADGNITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLE 105 (315)
T ss_dssp CCCCHHHHHHHHHHHHTCSSSCCSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT-TCEEEEEESS
T ss_pred cccHHHHHHHHHHHHHhccCCCCCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEECC
Confidence 3444554443333232223557899999999999999 9999999999999999999999999999987 8999999999
Q ss_pred CCHHHHHHHHHHHHcCCCccccccCCCCCC--CCHHHHHH---HHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcC
Q 005200 506 NKVREHARKLLEKHIKKPFFEANYGGSAER--MTVEEFEQ---GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG 580 (709)
Q Consensus 506 ~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~--l~~e~~~~---~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~ 580 (709)
|+.+++..|+++...+++...++.+ . ++++++.+ +...+....+++. .....++++|.+.+++++.+++
T Consensus 106 ~s~~~l~~R~~~~~~~i~~~~l~~~----~~~l~~~~~~~l~~a~~~l~~~~i~i~--d~~~~~~~~i~~~i~~l~~~~~ 179 (315)
T 3bh0_A 106 MGKKENIKRLIVTAGSINAQKIKAA----RRDFASEDWGKLSMAIGEISNSNINIF--DKAGQSVNYIWSKTRQTKRKNP 179 (315)
T ss_dssp SCHHHHHHHHHHHHTTCCHHHHHSC----HHHHCSSCHHHHHHHHHHHHTSCEEEE--CCSCCBHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHcCCCHHHHhcC----CCCCCHHHHHHHHHHHHHHhCCCEEEE--CCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999998877654 3 55555544 3445544444442 2344689999999999998899
Q ss_pred Cc--EEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccc
Q 005200 581 VR--GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 581 ~~--lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
++ +||||++. ++.......++.+.+.++++.|+.+|+++||+||+++| +|..+.+.+++|.++|++||+.+++.||
T Consensus 180 ~~~~lVVID~l~-~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD 258 (315)
T 3bh0_A 180 GKRVIVMIDYLQ-LLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDAD 258 (315)
T ss_dssp SCCEEEEEECGG-GSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCS
T ss_pred CCCeEEEEeCch-hcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCC
Confidence 99 99999554 44433234567788999999999999999999999999 8887777788999999999999999999
Q ss_pred eEEEEeeCCC--CCCCCCCeEEEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005200 658 NGIVIHRNRD--PEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 658 ~vl~l~r~~~--~e~~~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
+||+|+|++. ++....+.+++.|.|+|+|++|.+ .+.||++++||.++
T Consensus 259 ~vi~L~r~~~~~~~~~~~~~~~l~v~K~R~G~~g~~---~l~f~~~~~~f~~~ 308 (315)
T 3bh0_A 259 IIEFLYRDDYYDKESESKNIVEVIIAKHRDGPVGTV---SLAFIKEYGNFVNL 308 (315)
T ss_dssp EEEEEEEHHHHCTTCTTTTEEEEEEEEETTSCCEEE---EEEEEGGGTEEEEC
T ss_pred EEEEEecccccCccccCCCcEEEEEECCcCCCCceE---EEEEECCCCeEecC
Confidence 9999999762 222234678999999999887764 69999999999985
No 4
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=100.00 E-value=2e-37 Score=343.57 Aligned_cols=252 Identities=19% Similarity=0.261 Sum_probs=214.3
Q ss_pred CCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCc
Q 005200 446 GDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 524 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~ 524 (709)
+...|++|||+.||++++ +++|++++|+|+||+|||+|++|++.+++.+ |.+|+|||+||+.+++..|+++..++++.
T Consensus 175 ~~~~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlEms~~ql~~R~~~~~~~i~~ 253 (444)
T 3bgw_A 175 GNITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKENIKRLIVTAGSINA 253 (444)
T ss_dssp SSCCSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSSSCTTHHHHHHHHHHSCCCH
T ss_pred cCCCCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECCCCHHHHHHHHHHHHcCCCH
Confidence 456899999999999999 9999999999999999999999999999998 99999999999999999999999999998
Q ss_pred cccccCCCCCC--CCHHHHHH---HHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCc--EEEEccCcccccCCC
Q 005200 525 FEANYGGSAER--MTVEEFEQ---GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR--GLVIDPYNELDHQRP 597 (709)
Q Consensus 525 ~~i~~g~~~~~--l~~e~~~~---~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~--lIVID~~~~l~~~~~ 597 (709)
..++.| . +++++|.+ +...+....+++. .....++++|...+++++.+++++ +|||| +.+++....
T Consensus 254 ~~l~~g----~~~l~~~~~~~l~~a~~~l~~~~l~i~--d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID-~Lq~~~~~~ 326 (444)
T 3bgw_A 254 QKIKAA----RRDFASEDWGKLSMAIGEISNSNINIF--DKAGQSVNYIWSKTRQTKRKNPGKRVIVMID-YLQLLEPAK 326 (444)
T ss_dssp HHHHHT----GGGTCCSCHHHHHHHHHHHHTSCEEEE--CCSSCBHHHHHHHHHHHHHHSCSSCEEEEEE-CSTTSBCSC
T ss_pred HHHhcc----cCCCCHHHHHHHHHHHHHHhcCCEEEE--CCCCCCHHHHHHHHHHHHHHhCCCCeEEEEe-cHHhccCCC
Confidence 888765 4 65555544 4455655444442 234568999999999999999999 99999 555554332
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCC--CCCCCC
Q 005200 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP--EAGPID 674 (709)
Q Consensus 598 ~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~--e~~~~~ 674 (709)
...++.+++.++++.|+.+|+++||+||+++| +|..+.+.+++|.++|++||+.|+|.||+||+|+|++.. +....+
T Consensus 327 ~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r~~~~~~~~~~~~ 406 (444)
T 3bgw_A 327 ANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKN 406 (444)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCBGGGTCTTCSSTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEeccccccccccCCC
Confidence 23577888999999999999999999999999 888777778899999999999999999999999998743 222346
Q ss_pred eEEEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005200 675 RVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 675 ~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
.+++.|.|+|+|++|. +.+.|+++++||.+.
T Consensus 407 ~~~l~i~K~R~G~~g~---v~l~f~~~~~rf~~~ 437 (444)
T 3bgw_A 407 IVEVIIAKHRDGPVGT---VSLAFIKEYGNFVNL 437 (444)
T ss_dssp EEEEEEEEESSSCCEE---EEEEEETTTTEEECC
T ss_pred eEEEEEEcccCCCCeE---EEEEEEcCccEEecC
Confidence 8899999999988776 479999999999985
No 5
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=100.00 E-value=6.1e-36 Score=333.14 Aligned_cols=266 Identities=19% Similarity=0.270 Sum_probs=214.2
Q ss_pred ccchhhhhhhcccCCCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHH
Q 005200 432 DYFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 510 (709)
Q Consensus 432 d~~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~ 510 (709)
++++.+++.+.+ .+...|++|||+.||++++ +++|++++|+|+||+|||+|++|++.+++.++|.+|+|||+||+.++
T Consensus 165 ~~~~~~~~~~~~-~~~~~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~ 243 (444)
T 2q6t_A 165 ETFEHIEALFQN-KGEVAGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQ 243 (444)
T ss_dssp HHHHHTTC-----------CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHH
T ss_pred HHHHHHHHHHhC-CCCCCcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHH
Confidence 344555554433 3557899999999999999 99999999999999999999999999999855899999999999999
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHH---HHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Q 005200 511 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK---AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 587 (709)
Q Consensus 511 ~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~---~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID 587 (709)
+..|+++...+++...++.| .+++++|.++. ..+....+++. ..+..+++++...+++++.++++++||||
T Consensus 244 l~~R~~~~~~~i~~~~l~~g----~l~~~~~~~~~~a~~~l~~~~l~i~--d~~~~s~~~l~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 244 LTLRMMCSEARIDMNRVRLG----QLTDRDFSRLVDVASRLSEAPIYID--DTPDLTLMEVRARARRLVSQNQVGLIIID 317 (444)
T ss_dssp HHHHHHHHHTTCCTTTCCGG----GCCHHHHHHHHHHHHHHHTSCEEEE--CCTTCBHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHcCCCHHHHhCC----CCCHHHHHHHHHHHHHHhcCCEEEE--CCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 99999999999999888765 78999887754 44444444442 23456899999999999988999999999
Q ss_pred cCcccccCC---CCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEe
Q 005200 588 PYNELDHQR---PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 663 (709)
Q Consensus 588 ~~~~l~~~~---~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~ 663 (709)
+ .+++... ....++.+.+.++++.|+.+|+++||+||+++| +|..+.+.+++|.++|++||+.+++.||+||+|+
T Consensus 318 ~-l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 318 Y-LQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp C-GGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred C-hhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 5 4544432 122467788999999999999999999999999 8877776678999999999999999999999999
Q ss_pred eCCCCC--CCCCCeEEEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005200 664 RNRDPE--AGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 664 r~~~~e--~~~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
|++..+ ....+.+++.|.|+|+|++|. +.+.|+++++||.++
T Consensus 397 r~~~~~~~~~~~~~~~l~i~K~R~g~~g~---~~l~f~~~~~~f~~~ 440 (444)
T 2q6t_A 397 RDEYYNPHSEKAGIAEIIVGKQRNGPTGT---VELQFHASHVRFNDL 440 (444)
T ss_dssp EGGGTCSSSSCCSEEEEEEEECSSSCCEE---EEEEEETTTTEEECC
T ss_pred cccccCCcCCCCCeEEEEEEecCCCCceE---EEEEEECCccEEecC
Confidence 987432 223468899999999988776 479999999999985
No 6
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=100.00 E-value=4.1e-37 Score=337.39 Aligned_cols=265 Identities=20% Similarity=0.266 Sum_probs=194.9
Q ss_pred HHHHHHHHhcCcccccccCCceeeeecCCCCCCCCCCCceEEEEeeCCCeeEEEEeccccccccccccccccccccc---
Q 005200 118 EILKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQS--- 194 (709)
Q Consensus 118 ~~l~~~L~~~Gi~~~~~~~G~~~~~~CPfc~~~~~~~~s~sv~i~~~~~~~~~~Cf~~~Cg~~G~~~~~~~~~~~~~--- 194 (709)
..|.+++.++ ++++ +.|++++++||||+++ +|||+|+.+ ++.||||+ ||.+|++++|+|+.....
T Consensus 14 ~dI~dvi~~~-v~lk--k~G~~~~~~CPfh~ek---tpSf~V~~~----k~~~~CFg--Cg~gGd~i~fv~~~~~~sf~e 81 (407)
T 2au3_A 14 IDIVDVISEY-LNLE--KVGSNYRTNCPFHPDD---TPSFYVSPS----KQIFKCFG--CGVGGDAIKFVSLYEDISYFE 81 (407)
T ss_dssp CCHHHHHHHH-SCCE--EETTEEEECCSSSCCS---SCCEEEETT----TTEEEETT--TCCEECHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHh-cccc--cCCCeEEeeCcCCCCC---CCeEEEECC----CCEEEECC--CCCCCCHHHHHHHHhCCCHHH
Confidence 4455666665 5554 5789999999999984 688887765 79999999 999999999998743211
Q ss_pred ---hh------hhcc----chhh-h------hhhccccccCCcCcHHHHHHHHhCCCCHHHHHHcccccc----------
Q 005200 195 ---SL------KKFS----KMKT-I------REITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQK---------- 244 (709)
Q Consensus 195 ---~~------~~~~----~~~~-~------~~~~~~~~~~~~l~~~~~~YL~~RGI~~~~~~~~~~~~~---------- 244 (709)
.+ +.+. ..+. + .+.+.+.+. .+..+++||.+|||+.+++++|+++..
T Consensus 82 Av~~La~~~gi~~~~~~~~~~~~l~~~~~~a~~~~~~~L~---~~~~a~~YL~~RGi~~~~i~~f~lGyap~~~~l~~~l 158 (407)
T 2au3_A 82 AALELAKRYGKKLDLEKISKDEKVYVALDRVCDFYRESLL---KNREASEYVKSRGIDPKVARKFDLGYAPSSEALVKVL 158 (407)
T ss_dssp HHHHHHHHHTCCCCTTSCCHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHTTCCHHHHHHTTCEECCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCccchhHHHHHHHHHHHHHHHHHHHHh---cChHHHHHHHHcCCCHHHHHHhCCCCCCchHHHHHHH
Confidence 11 0000 0000 0 000111111 246789999999999999999875311
Q ss_pred -----------------------CCCCeeEEEEeEe-cCCEEEEEEee-cC---CCcccccC-----CCCCccccccccC
Q 005200 245 -----------------------RHGHEVVIAFPYW-RNGKLVNCKYR-DF---NKKFWQEK-----DTEKVFYGLDDIE 291 (709)
Q Consensus 245 -----------------------~~g~~~~i~fP~~-~~G~lv~~~~R-~~---~kk~~~~~-----~~~~~lyg~~~i~ 291 (709)
|+.++++++||+. .+|++++|++| .+ .+||.+++ +++..+||++.+.
T Consensus 159 ~~~~~~~~~l~~~Gl~~~~~g~~~d~f~~ri~fPi~d~~G~vigf~gRr~l~~~~pKylnspet~~f~k~~~lygl~~a~ 238 (407)
T 2au3_A 159 KENDLLEAYLETKNLLSPTKGVYRDLFLRRVVIPIKDPRGRVIGFGGRRIVEDKSPKYINSPDSRVFKKGENLFGLYEAK 238 (407)
T ss_dssp HHHTCHHHHHTTTCEECSSTTCCEETTTTEEEEEEECTTSCEEEEEEEECSCCSSCSEEECCCCSSCCGGGCEETHHHHH
T ss_pred HhcCCCHHHHHHCCceEecCCCcccccCCeEEEEEECCCCCEEEEEEEEecCCCCCeeecCCCCCCCCCCccccChHHHH
Confidence 0113579999998 78999999999 66 36788764 4567899988643
Q ss_pred ----CCCeEEEEcChhhHHHHHHhCCceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCc-CEEEEEecCChh
Q 005200 292 ----GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA-SRIILATDGDPP 366 (709)
Q Consensus 292 ----~~~~viI~EG~~DaLsl~q~g~~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~-~~Ivi~~DnD~a 366 (709)
+.+.|+||||++|+||++|+|+.++|+.+ |++ ++. .+++.|.++ ++|++|+|||.|
T Consensus 239 ~~i~~~~~viivEG~~Dvlsl~q~G~~n~VA~l-Gta-------lt~-----------~~~~~L~r~~~~vil~~D~D~A 299 (407)
T 2au3_A 239 EYIKEEGFAILVEGYFDLLRLFSEGIRNVVAPL-GTA-------LTQ-----------NQANLLSKFTKKVYILYDGDDA 299 (407)
T ss_dssp HHHHHHTCEEECSSHHHHHHHHHTTCCSEEEES-SSS-------CCH-----------HHHHHHHTTCSEEEEECCSSHH
T ss_pred HHhccCCeEEEEechHhHHHHHHCCCCcEEEcC-ccc-------CCH-----------HHHHHHHhcCCeEEEEEcCCHH
Confidence 45789999999999999999999999854 765 332 224555555 799999999999
Q ss_pred hHHHHHHHHHHhC--CcceEEEEcCCCCCCCCCCCHHHHHHhcCCCccceeeeccccc
Q 005200 367 GQALAEELARRVG--RERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422 (709)
Q Consensus 367 G~~aa~~~a~~l~--~~~~~iv~~P~~~~~~~~kD~ND~l~~~g~e~l~~~l~~A~~~ 422 (709)
|++||.++++.|. ..+++++.+| ++|||||+++++|.+++.+++++|.++
T Consensus 300 G~~Aa~r~~~~l~~~g~~~~v~~lP------~gkDpdd~l~~~g~~~~~~~l~~a~~~ 351 (407)
T 2au3_A 300 GRKAMKSAIPLLLSAGVEVYPVYLP------EGYDPDEFIKEFGKEELRRLINSSGEL 351 (407)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCC------TTCCHHHHHHHHCHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECC------CCCChHHHHHhcCHHHHHHHHHcCCCH
Confidence 9999999999883 2367878876 479999999999999999999888753
No 7
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=100.00 E-value=2.9e-34 Score=320.57 Aligned_cols=267 Identities=18% Similarity=0.259 Sum_probs=215.3
Q ss_pred ccchhhhhhhcccCCCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHH
Q 005200 432 DYFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 510 (709)
Q Consensus 432 d~~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~ 510 (709)
++++.+++.+.+ .+...|++|||+.||++++ +++|++++|+|+||+|||+|+++++.+++.+.|.+|+|||+||+.++
T Consensus 168 ~~~~~~~~~~~~-~~~~~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~ 246 (454)
T 2r6a_A 168 QTYDNIEMLHNR-DGEITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQ 246 (454)
T ss_dssp HHHHHHHHHHSC-CCCCCSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHH
T ss_pred HHHHHHHHHHhC-CCCCCCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHH
Confidence 445666665543 4567899999999999999 99999999999999999999999999999865889999999999999
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHH---HHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Q 005200 511 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK---AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 587 (709)
Q Consensus 511 ~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~---~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID 587 (709)
+..|+++...+++...++.| .++++++.++. ..+....+++. ..+..+++++...++.++.++++++||||
T Consensus 247 l~~r~~~~~~~~~~~~l~~g----~l~~~~~~~~~~a~~~l~~~~l~i~--d~~~~s~~~i~~~~~~l~~~~~~~livID 320 (454)
T 2r6a_A 247 LVMRMLCAEGNINAQNLRTG----KLTPEDWGKLTMAMGSLSNAGIYID--DTPSIRVSDIRAKCRRLKQESGLGMIVID 320 (454)
T ss_dssp HHHHHHHHHHTCCHHHHHTS----CCCHHHHHHHHHHHHHHHSSCEEEE--CCTTCCHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred HHHHHHHHHcCCCHHHHhcC----CCCHHHHHHHHHHHHHHhcCCEEEE--CCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 99999999999998888765 78888887654 44444444442 23456899999999998888899999999
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005200 588 PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 588 ~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
++..+........++.+.+.++++.|+.+|+++|++||+++| +|..+.+.+++|.++|++||+.+++.||.||+|++++
T Consensus 321 ~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 321 YLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred cHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 554443221112345678899999999999999999999999 8887776678899999999999999999999999987
Q ss_pred CCC--CCCCCeEEEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005200 667 DPE--AGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 667 ~~e--~~~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
..+ ....+.+++.|.|+|+|++|.+ .+.|++.++||.++
T Consensus 401 ~~~~~~~~~~~~~l~i~K~R~G~~g~v---~l~f~~~~~~f~~~ 441 (454)
T 2r6a_A 401 YYNKDSENKNIIEIIIAKQRNGPVGTV---QLAFIKEYNKFVNL 441 (454)
T ss_dssp C-------CCEEEEEEEEESSSCCEEE---EEEEETTTTEEECC
T ss_pred ccCcccCCCCeEEEEEecccCCCCeEE---EEEEEcCccEEeCC
Confidence 432 1124678999999999887764 79999999999985
No 8
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=99.97 E-value=1.3e-30 Score=268.76 Aligned_cols=238 Identities=24% Similarity=0.276 Sum_probs=165.3
Q ss_pred eeecCCCCCCCCCCCceEEEEeeCCCeeEEEEeccccccccccccccccccccchhhhccchhhhhhhccccccCCcCcH
Q 005200 141 RMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGN 220 (709)
Q Consensus 141 ~~~CPfc~~~~~~~~s~sv~i~~~~~~~~~~Cf~~~Cg~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 220 (709)
+..||.|+++ ..|+++ +++ .|+||. ||+++...++..+ ..+.... ...++.+++.+.+.|. .
T Consensus 14 ~~~CP~Cg~~----d~~~~~--~dg---~~~C~~--Cg~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~-~ 75 (255)
T 1nui_A 14 HIPCDNCGSS----DGNSLF--SDG---HTFCYV--CEKWTAGNEDTKE-----RASKRKP-SGGKPGTYNVWNFGES-N 75 (255)
T ss_dssp EECCSSSCCS----SCEEEE--TTS---CEEETT--TCCEEC----CHH-----HHHTTCC-CCBSTTCBCCBCGGGT-T
T ss_pred CCcCCCCCCC----CCceEe--CCC---Ceeccc--CCCcCCCcccccc-----ccccccC-cccccccccccccccc-H
Confidence 7799999885 247776 333 499998 9987653322110 0000000 0011223333443343 2
Q ss_pred HHHHHHHhCCCCHHHHHHccccccCCCCeeEEEEeEe-cCCEEEEEEeecCCCcccc-cCCCCCccccccccCCCCeEEE
Q 005200 221 ELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW-RNGKLVNCKYRDFNKKFWQ-EKDTEKVFYGLDDIEGESDIII 298 (709)
Q Consensus 221 ~~~~YL~~RGI~~~~~~~~~~~~~~~g~~~~i~fP~~-~~G~lv~~~~R~~~kk~~~-~~~~~~~lyg~~~i~~~~~viI 298 (709)
.+.+||.+|||+.+++++|+++.........++||+. .+|+++++++|..+++++. ...+...+||++.+.+.+.|+|
T Consensus 76 ~~~~YL~~RGi~~~~i~~f~~~~~~~~g~~~i~fp~~d~~G~vvg~~~R~~~~~~Ky~~s~k~~~lyg~~~~~~~~~v~i 155 (255)
T 1nui_A 76 GRYSALTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVV 155 (255)
T ss_dssp CBCCCBGGGTBCHHHHHHHTEEEEEETTEEEEEEEEECTTSCEEEEEEECTTCCCEEEECCCTTCCTTGGGCCCBSCCEE
T ss_pred HHHHHHHHcCCCHHHHHHhCeEEEccCCcEEEEEEEECCCCCEEEEEEECCCCCceEecCCCCccccCccccCCCCEEEE
Confidence 3678999999999999999885422122345999998 7899999999987555543 2235568999988766778999
Q ss_pred EcChhhHHHHHHh-CCc-eEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCcCEEEEEecCChhhHHHHHHHHH
Q 005200 299 VEGEMDKLSMEEA-GFL-NCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376 (709)
Q Consensus 299 ~EG~~DaLsl~q~-g~~-~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~~~Ivi~~DnD~aG~~aa~~~a~ 376 (709)
|||++|+||++|+ |.. ++++++++... . ..+|.++++.|.++++|+||+|||.||++|++++++
T Consensus 156 ~EG~~Dals~~~~~g~~~~v~slg~~~~~---------~-----~~~l~~~~~~l~~~~~iil~~D~D~aG~~aa~~~~~ 221 (255)
T 1nui_A 156 TEGEIDMLTVMELQDCKYPVVSLGHGASA---------A-----KKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQ 221 (255)
T ss_dssp ESSHHHHHHHHHHHTTCSCEECCTTTTTT---------H-----HHHHHHTHHHHTTBSCEEEECCSSHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHhhCCCcEEEECCCccch---------h-----HHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 9999999999999 643 45554333221 1 124555677788889999999999999999999999
Q ss_pred HhCCcceEEEEcCCCCCCCCCCCHHHHHHhcCCCccceeee
Q 005200 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE 417 (709)
Q Consensus 377 ~l~~~~~~iv~~P~~~~~~~~kD~ND~l~~~g~e~l~~~l~ 417 (709)
.|...+|+++.+| +|||||+|+++|.+++.++||
T Consensus 222 ~l~~~~v~~~~~p-------~kD~nd~l~~~g~~~~~~~i~ 255 (255)
T 1nui_A 222 VLPAGKVRVAVLP-------CKDANECHLNGHDREIMEQVW 255 (255)
T ss_dssp HSCTTTEEECCCS-------SSSHHHHHTTTTHHHHHHHHC
T ss_pred hccCCCEEEEeCC-------CCCHHHHHHhcCHHHHHHHhC
Confidence 9965577766543 799999999999988887764
No 9
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.96 E-value=6.2e-28 Score=254.36 Aligned_cols=262 Identities=21% Similarity=0.259 Sum_probs=181.4
Q ss_pred hhhhhhhcccCCCcccccc-cchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHH
Q 005200 435 DEIDAYYHRTSGDEFGIST-GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 512 (709)
Q Consensus 435 ~~ie~~~~~~~~~~~gi~t-g~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~ 512 (709)
+.+++.+.+ ....|++| |++.||++++ +++|++++|+|+||+|||||+.+++..++...|.+|+|+++|++..++.
T Consensus 3 ~~l~~~~~~--~~~~~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~ 80 (296)
T 1cr0_A 3 ERIREHLSS--EESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETA 80 (296)
T ss_dssp HHHHHHHHH--CCCCCBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHH
T ss_pred hHhhhhhcc--CCcCCcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHH
Confidence 445554433 56789999 9999999988 9999999999999999999999999999876678999999999999999
Q ss_pred HHHHHHHcCCCccc---cccCCCCCCCCHHHHHHHHHHH-hc-CcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Q 005200 513 RKLLEKHIKKPFFE---ANYGGSAERMTVEEFEQGKAWL-SN-TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 587 (709)
Q Consensus 513 ~Rl~~~~~g~~~~~---i~~g~~~~~l~~e~~~~~~~~l-~~-~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID 587 (709)
.|+.+...+.+... +..+ .++.+++.++.+.+ .. .+++. +.....++.++.+.+...+...++++||||
T Consensus 81 ~r~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~l~~~~l~i~--~~~~~~~~~~l~~~~~a~~~~~~p~llilD 154 (296)
T 1cr0_A 81 EDLIGLHNRVRLRQSDSLKRE----IIENGKFDQWFDELFGNDTFHLY--DSFAEAETDRLLAKLAYMRSGLGCDVIILD 154 (296)
T ss_dssp HHHHHHHTTCCGGGCHHHHHH----HHHHTHHHHHHHHHHSSSCEEEE--CCCCSCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHcCCChhhccccccC----CCCHHHHHHHHHHHhccCCEEEE--CCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99988877765432 2111 13334455544443 22 23322 212446788988888876778899999999
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCC---CCCCCCCccccccCchhhhcccceEEEEe
Q 005200 588 PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLH---NWVGEPPNLYDISGSAHFINKCDNGIVIH 663 (709)
Q Consensus 588 ~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~---~~~~~~p~l~di~GS~~i~~~AD~vl~l~ 663 (709)
..+.+.... ...+....+.++++.|+.+|+++|++||+++| +|... .+.+++|.++|++||+.+++.||.|++|+
T Consensus 155 ept~~~~~~-~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~ 233 (296)
T 1cr0_A 155 HISIVVSAS-GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE 233 (296)
T ss_dssp EEC------------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEE
T ss_pred CccccCCCC-CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEe
Confidence 666554221 11233356788999999999999999999999 54221 13468899999999999999999999999
Q ss_pred eCCCCCCCCCCeEEEEEEeee-CCCcceeeeEEEEEEccccEEEcCC
Q 005200 664 RNRDPEAGPIDRVQVCVRKVR-NKVVGTIGEAFLSYNRVTGEYMDIV 709 (709)
Q Consensus 664 r~~~~e~~~~~~~~l~v~K~R-~g~~G~~g~~~l~fd~~t~rf~~~~ 709 (709)
+.+..+. .+.+++.|.|+| +|+.|.++ .+.|++.+++|.++.
T Consensus 234 ~~~~~~~--~~~~~l~i~K~R~~g~~g~~~--~~~f~~~~~~f~~~~ 276 (296)
T 1cr0_A 234 RNQQGDM--PNLVLVRILKCRFTGDTGIAG--YMEYNKETGWLEPSS 276 (296)
T ss_dssp EC---------CEEEEEEEETTTCCCEEEE--EEEECTTTCCEEECC
T ss_pred cCcccCC--CCeEEEEEEccccCCCCCceE--EEEEEcCccEEecCC
Confidence 8774321 356899999999 68777642 799999999999863
No 10
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=99.93 E-value=5.2e-26 Score=239.44 Aligned_cols=181 Identities=21% Similarity=0.357 Sum_probs=144.7
Q ss_pred CcCcHHHHHHHHhCCCCHHHHHHccccc--cC----------------------------------CCCeeEEEEeEe-c
Q 005200 216 EPLGNELRAYFAERLISAETLRRNRVMQ--KR----------------------------------HGHEVVIAFPYW-R 258 (709)
Q Consensus 216 ~~l~~~~~~YL~~RGI~~~~~~~~~~~~--~~----------------------------------~g~~~~i~fP~~-~ 258 (709)
.|.+..+++||.+|||+++++++|+++. .. +.++++|+||+. .
T Consensus 26 ~~~g~~a~~YL~~Rgl~~e~i~~f~lGyap~~~~~l~~~l~~~g~~~~~l~~~GL~~~~~~g~~~yd~Fr~Ri~fPI~d~ 105 (329)
T 4edg_A 26 TVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKKGYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNA 105 (329)
T ss_dssp SSTTHHHHHHHHHTTCCHHHHHHHTCEEECSSSCHHHHHHHHTTCCHHHHHHTTSEEEETTTTEEEESCCSEEEEEEECT
T ss_pred CcccHHHHHHHHHcCCCHHHHHhCCeeeccCcHHHHHHHHHHCCCCHHHHHHCCCeEECCCCCccccccCCEEEEEEECC
Confidence 3445679999999999999999997741 11 113569999998 7
Q ss_pred CCEEEEEEeecCC---CcccccC-----CCCCccccccccC----CCCeEEEEcChhhHHHHHHhCCceEEEcCCCCCCC
Q 005200 259 NGKLVNCKYRDFN---KKFWQEK-----DTEKVFYGLDDIE----GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSS 326 (709)
Q Consensus 259 ~G~lv~~~~R~~~---kk~~~~~-----~~~~~lyg~~~i~----~~~~viI~EG~~DaLsl~q~g~~~~val~~G~~~~ 326 (709)
.|++++|++|.++ +||.+++ +++..|||++.+. +.+.|+||||++|+||++|+|+.++||. .|++
T Consensus 106 ~G~vigF~gR~l~~~~pKYlNspet~~f~K~~~Lygl~~a~~~i~~~~~vivvEG~~Dvial~q~Gi~naVA~-lGTa-- 182 (329)
T 4edg_A 106 QGRIVGYSGRTYTGQEPKYLNSPETPIFQKRKLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNVVAT-MGTQ-- 182 (329)
T ss_dssp TSCEEEEEEECSSSCSSSEEECCCCSSCCTTTCCBTHHHHHHHHHHHTCEEEESCHHHHHHHHHHTCCSEEEC-SSSC--
T ss_pred CCCEEEEEeEECCCCCCeEeCCCCcccccccchhccHHHHHHHhccCCcEEEEecHHHHHHHHHcCCCeEEEC-CccC--
Confidence 8999999999983 6898876 4678899998653 4678999999999999999999999994 5775
Q ss_pred CCCCCCCchhhhhhHHHHHhHhhhhcC-cCEEEEEecCChhhHHHHHHHHHHhC--CcceEEEEcCCCCCCCCCCCHHHH
Q 005200 327 VSKKNVPSEEQDTKYQYLWNCKMYLKQ-ASRIILATDGDPPGQALAEELARRVG--RERCWRVRWPKKNDVDHFKDANEV 403 (709)
Q Consensus 327 ~~~~~L~~~~~~~~~~~l~~~~~~L~~-~~~Ivi~~DnD~aG~~aa~~~a~~l~--~~~~~iv~~P~~~~~~~~kD~ND~ 403 (709)
++. +++..|.+ .++|++|+|+|.||++|+.++++.+. ..+++++.+| ++|||||+
T Consensus 183 -----lt~-----------~~~~~L~r~~~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~v~~lP------~gkDpdd~ 240 (329)
T 4edg_A 183 -----LSD-----------EHITFIRKLTSNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQLP------SGMDPDEY 240 (329)
T ss_dssp -----CCH-----------HHHHHHHHHCSEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEECCCC------TTCCHHHH
T ss_pred -----CCH-----------HHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEEECC------CCCCHHHH
Confidence 332 22344444 37999999999999999999999873 3478888877 57999999
Q ss_pred HHhcCCCccceee-ecccc
Q 005200 404 LMYLGPGALKEVV-ENAEL 421 (709)
Q Consensus 404 l~~~g~e~l~~~l-~~A~~ 421 (709)
++++|.+++++++ +++.+
T Consensus 241 l~~~G~~~~~~~i~~~~~~ 259 (329)
T 4edg_A 241 IGKYGNDAFTTFVKNDKKS 259 (329)
T ss_dssp HHHHCHHHHHHHHHHCCEE
T ss_pred HHHhCHHHHHHHHHhcCCC
Confidence 9999999999985 56655
No 11
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=99.93 E-value=2.2e-25 Score=236.29 Aligned_cols=181 Identities=20% Similarity=0.297 Sum_probs=144.1
Q ss_pred cCcHHHHHHHHhCCCCHHHHHHcccccc--C---------------------------------CCCeeEEEEeEe-cCC
Q 005200 217 PLGNELRAYFAERLISAETLRRNRVMQK--R---------------------------------HGHEVVIAFPYW-RNG 260 (709)
Q Consensus 217 ~l~~~~~~YL~~RGI~~~~~~~~~~~~~--~---------------------------------~g~~~~i~fP~~-~~G 260 (709)
+.++.+++||.+|||+++++++|+++.. . +.+.++|+||+. ..|
T Consensus 39 ~~~~~a~~YL~~RGls~e~i~~f~lGyap~~~~~L~~~l~~~g~~~~~l~~~GL~~~~~~g~~yd~Fr~Ri~fPI~d~~G 118 (338)
T 1dd9_A 39 PVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRG 118 (338)
T ss_dssp GGGHHHHHHHHHTTCCHHHHHHHTCEEECSSSCHHHHHHCSSHHHHHHHHHTTSEEEC---CEEESCCSEEEEEEECTTS
T ss_pred CccHHHHHHHHHcCCCHHHHHHcceeeccccHHHHHHHHHHcCCCHHHHHHCCCeeecCCCccccccCCEEEEEEECCCC
Confidence 3457899999999999999999987421 1 113569999998 789
Q ss_pred EEEEEEeecC---CCcccccC-----CCCCccccccc----cCCCCeEEEEcChhhHHHHHHhCCceEEEcCCCCCCCCC
Q 005200 261 KLVNCKYRDF---NKKFWQEK-----DTEKVFYGLDD----IEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS 328 (709)
Q Consensus 261 ~lv~~~~R~~---~kk~~~~~-----~~~~~lyg~~~----i~~~~~viI~EG~~DaLsl~q~g~~~~val~~G~~~~~~ 328 (709)
++++|++|.+ .+||.+++ +++..|||++. +.+.+.|+||||++|+||++|+|+.++|++ .|++
T Consensus 119 ~vigf~gR~l~~~~pKYlnspet~if~K~~~Lygl~~A~~~i~~~~~viIvEG~~Dvlsl~q~G~~~aVA~-lGta---- 193 (338)
T 1dd9_A 119 RVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVAS-LGTS---- 193 (338)
T ss_dssp CEEEEEEEESSSCSCSEEECCCCSSCCTTTCCBTHHHHHHTCSSCSCEEEESSHHHHHHHHHTTCCCEEEC-CC-C----
T ss_pred cEEEEEEEeCCCCCCceecCCCCcccccCccccCccHHHHhhccCCeEEEEechHhHHHHHHcCCCcEEEe-Cccc----
Confidence 9999999998 35888876 36788999874 445778999999999999999999989985 5776
Q ss_pred CCCCCchhhhhhHHHHHhHhhhhcC-cCEEEEEecCChhhHHHHHHHHHH---hC--CcceEEEEcCCCCCCCCCCCHHH
Q 005200 329 KKNVPSEEQDTKYQYLWNCKMYLKQ-ASRIILATDGDPPGQALAEELARR---VG--RERCWRVRWPKKNDVDHFKDANE 402 (709)
Q Consensus 329 ~~~L~~~~~~~~~~~l~~~~~~L~~-~~~Ivi~~DnD~aG~~aa~~~a~~---l~--~~~~~iv~~P~~~~~~~~kD~ND 402 (709)
++. +++..|.+ .++|+||+|||.||++|++++++. +. ..+++++.+| .+|||||
T Consensus 194 ---lt~-----------~~~~~L~r~~~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~~lP------~gkDpdd 253 (338)
T 1dd9_A 194 ---TTA-----------DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLP------DGEDPDT 253 (338)
T ss_dssp ---CCH-----------HHHHHHHHHCSEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEEEEC------TTCCHHH
T ss_pred ---cCH-----------HHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEecCC------CCCChHH
Confidence 332 12333332 379999999999999999999987 42 2368888887 4799999
Q ss_pred HHHhcCCCccceeeeccccc
Q 005200 403 VLMYLGPGALKEVVENAELY 422 (709)
Q Consensus 403 ~l~~~g~e~l~~~l~~A~~~ 422 (709)
+++++|.+++.+++++|.++
T Consensus 254 ~l~~~G~~~~~~~l~~a~~~ 273 (338)
T 1dd9_A 254 LVRKEGKEAFEARMEQAMPL 273 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEEH
T ss_pred HHHHhcHHHHHHHHHcCCCH
Confidence 99999999999999888764
No 12
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.92 E-value=3.1e-25 Score=226.84 Aligned_cols=222 Identities=15% Similarity=0.141 Sum_probs=157.4
Q ss_pred CCcccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCC
Q 005200 446 GDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 523 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~ 523 (709)
.++.+++||++.||++++ +++|++++|+|+||+|||+|++|++.+.+.+.|.+|+|+|+||+++++.+|+.+...+..
T Consensus 7 ~~i~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~ 86 (251)
T 2zts_A 7 QPVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFE 86 (251)
T ss_dssp -CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHH
T ss_pred CCCCeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChH
Confidence 567899999999999995 999999999999999999999999999877668999999999999999999865433221
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHH
Q 005200 524 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 603 (709)
Q Consensus 524 ~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~ 603 (709)
.. ...+ .+...++............+ ......+.+.+.+.+..++...++++||||++..+.... .+.
T Consensus 87 ~~-~~~~----~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~----~~~ 154 (251)
T 2zts_A 87 KY-EKEG----KIAIVDGVSSVVGLPSEEKF---VLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL----EEE 154 (251)
T ss_dssp HH-HHTT----SEEEEC----------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS----SSG
T ss_pred HH-HhcC----cchhhhhHHHHhhcccchhc---cccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhc----cCh
Confidence 10 0000 00000000000001010011 113455678889999999999999999999887765422 123
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEee
Q 005200 604 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 683 (709)
Q Consensus 604 ~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~ 683 (709)
..+.+++..|+.+|+++||+|++++|... +...++++++.+++.||.|+.|++.+... ...+.+.|.|+
T Consensus 155 ~~~~~~~~~L~~~a~~~~i~vi~~~q~~~--------~~~~~~~~~~~~~~~aD~vi~l~~~~~~~---~~~R~l~I~K~ 223 (251)
T 2zts_A 155 RKIREVLLKLNTILLEMGVTTILTTEAPD--------PQHGKLSRYGIEEFIARGVIVLDLQEKNI---ELKRYVLIRKM 223 (251)
T ss_dssp GGHHHHHHHHHHHHHHHCCEEEEEECCC------------CCSSSSSCGGGGCSEEEEEEEEECSS---SEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEEec--------ccccccccCCceeEEeeEEEEEEEEecCC---eEEEEEEEEEc
Confidence 44678899999999999999999999422 23346788999999999999999876432 23567999999
Q ss_pred eCCCcce
Q 005200 684 RNKVVGT 690 (709)
Q Consensus 684 R~g~~G~ 690 (709)
|+++.+.
T Consensus 224 R~~~~~~ 230 (251)
T 2zts_A 224 RETRHSM 230 (251)
T ss_dssp TTCCCCC
T ss_pred CCCCCCC
Confidence 9987644
No 13
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=99.85 E-value=7.8e-21 Score=204.72 Aligned_cols=218 Identities=14% Similarity=0.122 Sum_probs=154.4
Q ss_pred CCcccccccchhhhhhhc---cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCC
Q 005200 446 GDEFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 522 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~---l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~ 522 (709)
....+++||++.||.+++ +++|++++|+|+||+|||+|+++++.+++.+ |.+|+||++|++..++. +...|+
T Consensus 50 ~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~~E~s~~~~~----a~~~g~ 124 (366)
T 1xp8_A 50 LDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEHALDPVY----ARALGV 124 (366)
T ss_dssp CCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHH----HHHTTC
T ss_pred ccCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEECCCChhHHH----HHHcCC
Confidence 345789999999999984 9999999999999999999999999999987 89999999999876653 223343
Q ss_pred CccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCC--CC-
Q 005200 523 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP--VS- 599 (709)
Q Consensus 523 ~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~--~~- 599 (709)
+.. ++++. ...+.+++.+.++.+++..++++||||++..+..... ..
T Consensus 125 d~~-------------------------~l~i~-----~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~ 174 (366)
T 1xp8_A 125 NTD-------------------------ELLVS-----QPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDM 174 (366)
T ss_dssp CGG-------------------------GCEEE-----CCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC----
T ss_pred CHH-------------------------Hceee-----cCCcHHHHHHHHHHHHhcCCCCEEEEeChHHhcccccccccc
Confidence 321 12332 1346788888888888778899999997777653111 00
Q ss_pred -C----CHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCC--CCCC
Q 005200 600 -Q----TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD--PEAG 671 (709)
Q Consensus 600 -~----~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~--~e~~ 671 (709)
. ...+.+.++++.|+.+|+++|++||+++| +++.....+ .| ....|+..+++.||+++.|+|.+. ++..
T Consensus 175 gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg-~p--~~~~gg~al~~~a~~rl~L~r~~~~~k~~~ 251 (366)
T 1xp8_A 175 GDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYG-NP--ETTTGGRALKFYASVRLDVRKIGQPTKVGN 251 (366)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC------------------CHHHHHHHCSEEEEEEEESCCC----
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccC-Cc--cccCCcchhhheeeEEEEEEecchhcccCc
Confidence 0 12245788999999999999999999999 655543211 11 122578899999999999998763 2111
Q ss_pred --CCCeEEEEEEeeeCCCcceeeeEEEEEEcc
Q 005200 672 --PIDRVQVCVRKVRNKVVGTIGEAFLSYNRV 701 (709)
Q Consensus 672 --~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~ 701 (709)
..+.+++.|.|+|+++.+....+.+.|+.-
T Consensus 252 ~~~g~~~~v~v~Knr~~p~~~~~~f~i~~~~G 283 (366)
T 1xp8_A 252 DAVANTVKIKTVKNKVAAPFKEVELALVYGKG 283 (366)
T ss_dssp --CEEEEEEEEEEESSSCCCCEEEEEEETTTE
T ss_pred cccCCEEEEEEEcCCCCCCCceEEEEEEeCCC
Confidence 124689999999999876655556655543
No 14
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=99.85 E-value=1.1e-20 Score=201.51 Aligned_cols=236 Identities=15% Similarity=0.118 Sum_probs=143.1
Q ss_pred CccceeeeccccccccccccccccchhhhhhhcccCCCcccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHH
Q 005200 410 GALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDAL 487 (709)
Q Consensus 410 e~l~~~l~~A~~~~~~~l~~~~d~~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~ql 487 (709)
+.+.++++.|......+..+..++.+. .....+++||++.||.+++ +++|++++|+|+||+|||+|++++
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~l 127 (324)
T 2z43_A 56 STAQKIIKEARDALDIRFKTALEVKKE--------RMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQL 127 (324)
T ss_dssp ----------------CCCCHHHHHHH--------HCSCCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccchhhhhhh--------hccCCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHH
Confidence 455666666655444445555444321 1345789999999999994 999999999999999999999999
Q ss_pred HHHHHHhc-----CCeEEEEECCCC--HHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCC
Q 005200 488 ICNINEHA-----GWKFVLCSMENK--VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEND 560 (709)
Q Consensus 488 a~~~a~~~-----g~~Vly~SlE~~--~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~ 560 (709)
+.+++... +.+|+|+++|++ ++++..++. ..+++ .+++ + +++++.+
T Consensus 128 a~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~--~~g~~--------------~~~~------~-~~l~~~~---- 180 (324)
T 2z43_A 128 SVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAK--ALGLD--------------IDNV------M-NNIYYIR---- 180 (324)
T ss_dssp HHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH--HTTCC--------------HHHH------H-HTEEEEE----
T ss_pred HHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHH--HhCCC--------------HHHH------h-ccEEEEe----
Confidence 99876543 689999999997 777776642 22322 2221 1 2344432
Q ss_pred CCCCHH---HHHHHHHHHHHh-cCCcEEEEccCcccccCCCC--CC--CHHHHHHHHHHHHHHHHHHhCcEEEEEec-cC
Q 005200 561 SLPSIK---WVLDLAKAAVLR-HGVRGLVIDPYNELDHQRPV--SQ--TETEYVSQMLTMVKRFAQHHACHVWFVAH-PR 631 (709)
Q Consensus 561 ~~~~i~---~i~~~i~~~~~~-~~~~lIVID~~~~l~~~~~~--~~--~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~r 631 (709)
..+.+ +++..+..++.+ .++++||||++..+...... +. ++.+.+.+++..|+.+|+++|++||+++| ++
T Consensus 181 -~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 181 -AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred -CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceee
Confidence 22334 455666667777 78999999988877542111 11 12346789999999999999999999999 55
Q ss_pred CCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEeeeCCCcce
Q 005200 632 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 690 (709)
Q Consensus 632 k~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~R~g~~G~ 690 (709)
+..... .+.....|+..+++.||++|.|++.+. ..+.+.+.|+|+++.|.
T Consensus 260 ~~~~~~---~~~~~~~gg~~l~~~~d~~l~l~r~~~------~~r~~~v~k~~~~p~~~ 309 (324)
T 2z43_A 260 RPDMFY---GDPTVAVGGHTLYHVPGIRIQLKKSRG------NRRIARVVDAPHLPEGE 309 (324)
T ss_dssp -------------------------CEEEEEEECST------TEEEEEEEECSSSCCEE
T ss_pred cCCCcC---CCCCCCCchHHHHhhCcEEEEEEEcCC------CeEEEEEEECCCCCceE
Confidence 443211 111234577789999999999998652 25689999999987765
No 15
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=99.84 E-value=2.6e-20 Score=199.97 Aligned_cols=243 Identities=14% Similarity=0.123 Sum_probs=150.9
Q ss_pred CccceeeeccccccccccccccccchhhhhhhcccCCCcccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHH
Q 005200 410 GALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDAL 487 (709)
Q Consensus 410 e~l~~~l~~A~~~~~~~l~~~~d~~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~ql 487 (709)
+...++++.|......+..+..++.+. .....+++||++.||.+++ +++|++++|+|+||+|||+|++++
T Consensus 71 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~l 142 (343)
T 1v5w_A 71 AKVDKIKEAANKLIEPGFLTAFEYSEK--------RKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTL 142 (343)
T ss_dssp ---------------CCSEEHHHHHHH--------GGGCCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCcHHHHHhh--------hcccceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 345556666555444444444444322 1235789999999999995 999999999999999999999999
Q ss_pred HHHHHHh-----cCCeEEEEECCCC--HHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCC
Q 005200 488 ICNINEH-----AGWKFVLCSMENK--VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEND 560 (709)
Q Consensus 488 a~~~a~~-----~g~~Vly~SlE~~--~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~ 560 (709)
+.+++.. .+.+|+||++|++ ++++..++.. .++ ..++ .+ +++++.+. .
T Consensus 143 a~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~--~g~--------------~~~~------~l-~~l~~~~~--~ 197 (343)
T 1v5w_A 143 CVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR--FNV--------------DHDA------VL-DNVLYARA--Y 197 (343)
T ss_dssp HHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHH--TTC--------------CHHH------HH-HTEEEEEC--C
T ss_pred HHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH--cCC--------------CHHH------HH-hceeEeec--C
Confidence 9987652 2789999999996 7777666532 232 1211 12 23444322 1
Q ss_pred CCCCHHHHHHHHHHHHHh--cCCcEEEEccCcccccCCCC--CC--CHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCC
Q 005200 561 SLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPV--SQ--TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQL 633 (709)
Q Consensus 561 ~~~~i~~i~~~i~~~~~~--~~~~lIVID~~~~l~~~~~~--~~--~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~ 633 (709)
....+.+++..+..++.+ .++++||||++..+...... +. .+.+.+.+++..|+.+|+++|++||+++| +++.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~ 277 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADP 277 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC----
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecC
Confidence 122233455566677777 78999999988877642111 11 12335789999999999999999999999 5554
Q ss_pred CCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEeeeCCCccee
Q 005200 634 HNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI 691 (709)
Q Consensus 634 ~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~R~g~~G~~ 691 (709)
..+..-..+...-.|+..+++.||++|.|++.+. ..+.+.|.|+|+++.|..
T Consensus 278 ~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r~~~------~~r~~~v~K~r~~p~~~~ 329 (343)
T 1v5w_A 278 GATMTFQADPKKPIGGHILAHASTTRISLRKGRG------ELRIAKIYDSPEMPENEA 329 (343)
T ss_dssp ---------------CCTTTTSSSEEEEEEESST------TEEEEEEEECTTCCSSCE
T ss_pred CCccccCCCCCcCCchHHHHHhCCEEEEEEEcCC------CEEEEEEEECCCCCCeeE
Confidence 3210000000112366689999999999998652 257899999999987663
No 16
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.84 E-value=8.2e-20 Score=186.12 Aligned_cols=211 Identities=14% Similarity=0.204 Sum_probs=146.5
Q ss_pred ccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccc
Q 005200 449 FGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 526 (709)
Q Consensus 449 ~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~ 526 (709)
.+++||++.||++++ +++|++++|+|+||+|||+|+++++.+++.+ |.+|+|+++|++..++.+|+. ..|.+...
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~e~~~~~~~~~~~--~~g~~~~~ 79 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVALEEHPVQVRQNMA--QFGWDVKP 79 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEESSSCHHHHHHHHH--TTTCCCHH
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHHHHH--HcCCCHHH
Confidence 578999999999974 9999999999999999999999999999987 999999999999998888774 23443322
Q ss_pred cc-cCCCCCCCCHHH-HHHHHHHHhc-CcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHH
Q 005200 527 AN-YGGSAERMTVEE-FEQGKAWLSN-TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 603 (709)
Q Consensus 527 i~-~g~~~~~l~~e~-~~~~~~~l~~-~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~ 603 (709)
+. .+ .+...+ .......+.. ..+.+ +...+++++.+.+..++.+.++++||||++..+... +.
T Consensus 80 ~~~~~----~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~-----~~- 145 (247)
T 2dr3_A 80 YEEKG----MFAMVDAFTAGIGKSKEYEKYIV----HDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYIN-----KP- 145 (247)
T ss_dssp HHHHT----SEEEEECSTTTTCC--CCCSCBC----SCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTT-----CG-
T ss_pred HhhCC----cEEEEecchhhcccccccccccc----cCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcC-----CH-
Confidence 10 00 000000 0000000000 11111 223467788888888888889999999988777521 11
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEe
Q 005200 604 EYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRK 682 (709)
Q Consensus 604 ~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K 682 (709)
....+++..|.++++++|++|++++| ++... . +.++ .+++.||.++.|++.+... ...+.+.|.|
T Consensus 146 ~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~--~--------~~~~-~~~~~~D~vi~L~~~~~~~---~~~r~l~v~K 211 (247)
T 2dr3_A 146 AMARSIILQLKRVLAGTGCTSIFVSQVSVGER--G--------FGGP-GVEHGVDGIIRLDLDEIDG---ELKRSLIVWK 211 (247)
T ss_dssp GGHHHHHHHHHHHHHHTTCEEEEEEECC------C--------CC-C-CHHHHSSEEEEEEEEEETT---EEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCCCCcc--c--------cccc-ccceeEEEEEEEEEEccCC---eeEEEEEEEE
Confidence 23456778899999999999999999 54321 1 1233 4889999999999875321 2368899999
Q ss_pred eeCCCcce
Q 005200 683 VRNKVVGT 690 (709)
Q Consensus 683 ~R~g~~G~ 690 (709)
+|+++.+.
T Consensus 212 ~R~~~~~~ 219 (247)
T 2dr3_A 212 MRGTSHSM 219 (247)
T ss_dssp ETTSCCCC
T ss_pred CCCCCCCC
Confidence 99998763
No 17
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=99.84 E-value=1.5e-20 Score=200.27 Aligned_cols=233 Identities=12% Similarity=0.115 Sum_probs=160.0
Q ss_pred eeeeccccccccccccccccchhhhhhhcccCCCcccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 414 EVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 414 ~~l~~A~~~~~~~l~~~~d~~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
++++.|......+..+..++.+. .....+++||++.||.+++ +++|++++|+|+||+|||+|++|++.++
T Consensus 51 ~~i~~a~~~~~~~~~~~~~~~~~--------~~~~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 51 KMIMGARDLCDLGFKSGIDLLKQ--------RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHHHHHTTCSCCCTHHHHHH--------HTTCCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhcCCcHHHHHHH--------hccCCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444444333445555554321 1345789999999999994 9999999999999999999999999986
Q ss_pred HHh-----------cC----CeEEEEECCCC--HHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHHHHHhcCcce
Q 005200 492 NEH-----------AG----WKFVLCSMENK--VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554 (709)
Q Consensus 492 a~~-----------~g----~~Vly~SlE~~--~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~ 554 (709)
+.. .| .+|+||++|++ ++++.+++.. .+++ .+++ + +++++
T Consensus 123 ~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~--~g~~--------------~~~~------~-~~l~~ 179 (322)
T 2i1q_A 123 QNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH--AGID--------------GQTV------L-DNTFV 179 (322)
T ss_dssp TCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH--HTCC--------------HHHH------H-HTEEE
T ss_pred hccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH--cCCC--------------HHHH------h-cCEEE
Confidence 532 14 79999999997 7888766532 2322 1211 1 23444
Q ss_pred EEecCCCCCCHH---HHHHHHHHHHHh-cCCcEEEEccCcccccCCCC--CC--CHHHHHHHHHHHHHHHHHHhCcEEEE
Q 005200 555 IRCENDSLPSIK---WVLDLAKAAVLR-HGVRGLVIDPYNELDHQRPV--SQ--TETEYVSQMLTMVKRFAQHHACHVWF 626 (709)
Q Consensus 555 i~~~~~~~~~i~---~i~~~i~~~~~~-~~~~lIVID~~~~l~~~~~~--~~--~~~~~~~~i~~~Lk~lA~~~~i~Vi~ 626 (709)
.+ ..+.+ +++..+..++.+ .++++||||++..+...... +. ++.+.+.+++..|+.+|+++|++||+
T Consensus 180 ~~-----~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~ 254 (322)
T 2i1q_A 180 AR-----AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLV 254 (322)
T ss_dssp EE-----CSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred Ee-----CCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 42 22344 355566666777 78999999988877542111 11 12346789999999999999999999
Q ss_pred Eec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEeeeCCCccee
Q 005200 627 VAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI 691 (709)
Q Consensus 627 v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~R~g~~G~~ 691 (709)
++| +++..... .+.....|+..+++.||++|.|++.+. +.+.+.+.|+|+++.|..
T Consensus 255 ~nq~~~~~~~~~---g~~~~~~g~~~~~~~~d~~i~l~~~~~------~~r~~~v~k~~~~p~~~~ 311 (322)
T 2i1q_A 255 TNQVSAKPDAFF---GMAEQAIGGHIVGHAATFRFFVRKGKG------DKRVAKLYDSPHLPDAEA 311 (322)
T ss_dssp EECEECC----------CCEESSHHHHHHHCSEEEEEEECST------TEEEEEEEECSSSCCEEE
T ss_pred ECceeecCCCCC---CCCcCCCCcHHHHhcCcEEEEEEecCC------CeEEEEEEECCCCCCeEE
Confidence 999 65543211 111235678899999999999998762 246899999999987653
No 18
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.83 E-value=5.6e-20 Score=227.67 Aligned_cols=213 Identities=15% Similarity=0.116 Sum_probs=162.8
Q ss_pred CCcccccccchhhhhhhc---cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCC
Q 005200 446 GDEFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 522 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~---l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~ 522 (709)
....+++||+++||.+++ +++|++++|+|+||+|||+|+++++.+++.+ |.+|+|||+||+.+++. +...|+
T Consensus 708 ~~~~~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~-g~~VlyiS~Ees~~ql~----A~~lGv 782 (1706)
T 3cmw_A 708 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY----ARKLGV 782 (1706)
T ss_dssp GSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHHH----HHHTTC
T ss_pred ccccccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHc-CCCeEEEeccchHHHHH----HHHcCC
Confidence 356899999999999994 9999999999999999999999999999986 89999999999988763 444454
Q ss_pred CccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCccccc-C---CCC
Q 005200 523 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH-Q---RPV 598 (709)
Q Consensus 523 ~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~-~---~~~ 598 (709)
+.. ++++. ...+++++.+.+++++.+.++++||||++..+.. . ...
T Consensus 783 d~~-------------------------~L~i~-----~~~~leei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~ 832 (1706)
T 3cmw_A 783 DID-------------------------NLLCS-----QPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI 832 (1706)
T ss_dssp CGG-------------------------GCEEE-----CCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCT
T ss_pred Chh-------------------------heEEe-----cCCcHHHHHHHHHHHHHccCCCEEEEechhhhcccccccccc
Confidence 332 12333 2347889999999988889999999996665542 1 011
Q ss_pred CC----CHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCC---CCC
Q 005200 599 SQ----TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD---PEA 670 (709)
Q Consensus 599 ~~----~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~---~e~ 670 (709)
+. ...+.+.+++..|+.+|+++|++||+++| ++..+...+ .|. .-.||+.+++.||++|.|+|.+. .++
T Consensus 833 G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~G-dp~--~p~gs~~Leq~ADvvl~L~R~~~~~~g~~ 909 (1706)
T 3cmw_A 833 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG-NPE--TTTGGNALKFYASVRLDIRRIGAVKEGEN 909 (1706)
T ss_dssp TCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSS-CCE--EESSCSHHHHHEEEEEEEEEEEEEEETTE
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccC-Ccc--ccCCcchhhheeeEEEEEEeccccccccc
Confidence 11 13456788899999999999999999999 766544332 221 23478999999999999998751 111
Q ss_pred CCCCeEEEEEEeeeCCCcceeeeEEE
Q 005200 671 GPIDRVQVCVRKVRNKVVGTIGEAFL 696 (709)
Q Consensus 671 ~~~~~~~l~v~K~R~g~~G~~g~~~l 696 (709)
...+.+.+.+.|||+|+.|..+.+.+
T Consensus 910 ~~g~~r~l~V~KnR~gp~~~~~~F~I 935 (1706)
T 3cmw_A 910 VVGSETRVKVVKNKIAAPFKQAEFQI 935 (1706)
T ss_dssp EEEEEEEEEEEEESSSCSCCEEEEEE
T ss_pred ccCcEEEEEEEecCCCCCCceEEEEE
Confidence 11236899999999999998865555
No 19
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.82 E-value=5.9e-19 Score=176.61 Aligned_cols=201 Identities=18% Similarity=0.149 Sum_probs=141.2
Q ss_pred cccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC--CHHHHHHHHHHHHcCCCcc
Q 005200 450 GISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN--KVREHARKLLEKHIKKPFF 525 (709)
Q Consensus 450 gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~--~~~~~~~Rl~~~~~g~~~~ 525 (709)
.++||++.||++++ +++|++++|.|+||+|||+|+.+++. .. |.+|+|++.|+ +..++.... . ..+
T Consensus 1 ri~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~-~~~v~~i~~~~~~~~~~~~~~~-~-~~~---- 70 (220)
T 2cvh_A 1 MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LS-GKKVAYVDTEGGFSPERLVQMA-E-TRG---- 70 (220)
T ss_dssp CBCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HH-CSEEEEEESSCCCCHHHHHHHH-H-TTT----
T ss_pred CcccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---Hc-CCcEEEEECCCCCCHHHHHHHH-H-hcC----
Confidence 37899999999994 99999999999999999999999998 34 89999999998 776554322 1 111
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHH
Q 005200 526 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 605 (709)
Q Consensus 526 ~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~ 605 (709)
+..+++ + +++++... ........++..++.++.+ ++++||||+...+........+..+.
T Consensus 71 ----------~~~~~~------~-~~~~~~~~--~~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~~~~~~~~~ 130 (220)
T 2cvh_A 71 ----------LNPEEA------L-SRFILFTP--SDFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEENRSGLIAE 130 (220)
T ss_dssp ----------CCHHHH------H-HHEEEECC--TTTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGGGSSTTHHH
T ss_pred ----------CChHHH------h-hcEEEEec--CCHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcCchHHHHHH
Confidence 222221 1 12233211 1111123344445544434 79999999887765432112334567
Q ss_pred HHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEeee
Q 005200 606 VSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 684 (709)
Q Consensus 606 ~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~R 684 (709)
+.++++.|++++++++++||+++| ++..+. .... ..+|..+++.||.++.|++.+. .+.+.+.|.|+|
T Consensus 131 ~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~-~~~~-----p~~~~~~~~~~d~vi~l~~~~~-----~~~r~l~v~K~r 199 (220)
T 2cvh_A 131 LSRQLQVLLWIARKHNIPVIVINQVHFDSRT-EMTK-----PVAEQTLGYRCKDILRLDKLPK-----PGLRVAVLERHR 199 (220)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECSSSSCTT-SSCC-----SCCCHHHHHTSSEEEEEEECSS-----TTEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeEEEcCCC-Cccc-----cCCCcceeecCcEEEEEEEecC-----CCEEEEEEEeCC
Confidence 788999999999999999999999 554432 1222 3467789999999999998763 136789999999
Q ss_pred CCCccee
Q 005200 685 NKVVGTI 691 (709)
Q Consensus 685 ~g~~G~~ 691 (709)
+++.|..
T Consensus 200 ~~~~~~~ 206 (220)
T 2cvh_A 200 FRPEGLM 206 (220)
T ss_dssp SSCTTCE
T ss_pred CCCCCce
Confidence 9988764
No 20
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=99.81 E-value=4e-19 Score=190.83 Aligned_cols=206 Identities=16% Similarity=0.121 Sum_probs=145.6
Q ss_pred Ccccccccchhhhhhh--c-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCC
Q 005200 447 DEFGISTGWRALNELY--N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 523 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll--~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~ 523 (709)
...+++||++.||.++ | +++|++++|+|+||+|||+|+++++.+++.+ |.+|+||++|++..+.. +...|++
T Consensus 40 ~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid~E~s~~~~~----a~~~g~~ 114 (356)
T 1u94_A 40 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY----ARKLGVD 114 (356)
T ss_dssp CCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHH----HHHTTCC
T ss_pred cCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCCccHHH----HHHcCCC
Confidence 4578999999999999 4 9999999999999999999999999999987 89999999999865442 2223432
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCC--CCC--
Q 005200 524 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR--PVS-- 599 (709)
Q Consensus 524 ~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~--~~~-- 599 (709)
.. .++++ ...+.+++.+.++.+++..++++||||++..+.... ...
T Consensus 115 ~~-------------------------~l~i~-----~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g 164 (356)
T 1u94_A 115 ID-------------------------NLLCS-----QPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIG 164 (356)
T ss_dssp GG-------------------------GCEEE-----CCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC--
T ss_pred hh-------------------------heeee-----CCCCHHHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccc
Confidence 21 12232 123577888888888888899999999777665311 000
Q ss_pred C----CHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCC-CCCCC-
Q 005200 600 Q----TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD-PEAGP- 672 (709)
Q Consensus 600 ~----~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~-~e~~~- 672 (709)
. ...+.+.+++..|+.+++++|++||+++| +++...+.+ .| ..-.|+..+++.||++|.++|.+. ++..+
T Consensus 165 ~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg-~~--~~~~gG~~l~~~advrl~l~r~~~~k~g~~~ 241 (356)
T 1u94_A 165 DSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG-NP--ETTTGGNALKFYASVRLDIRRIGAVKEGENV 241 (356)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC-----------------CTTCSHHHHHCSEEEEEEEEEEEESSSSE
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC-CC--cccCCCcceeeeccEEEEEEEeeeeccCccc
Confidence 1 12235788999999999999999999999 655433211 11 112355689999999999998751 11111
Q ss_pred -CCeEEEEEEeeeCCCcce
Q 005200 673 -IDRVQVCVRKVRNKVVGT 690 (709)
Q Consensus 673 -~~~~~l~v~K~R~g~~G~ 690 (709)
.+.+.+.|.|+|+++.+.
T Consensus 242 ~g~~~~~~i~K~r~~p~~~ 260 (356)
T 1u94_A 242 VGSETRVKVVKNKIAAPFK 260 (356)
T ss_dssp EEEEEEEEEEEESSBCSCC
T ss_pred cCcEEEEEECCCccCCCCC
Confidence 246899999999998433
No 21
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.81 E-value=5.1e-20 Score=229.87 Aligned_cols=215 Identities=16% Similarity=0.127 Sum_probs=161.7
Q ss_pred Ccccccccchhhhhhhc---cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCC
Q 005200 447 DEFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 523 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~---l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~ 523 (709)
...+++||++.||.+++ +++|++++|+|+||+|||+|++|++.+++.+ |.+|+|||+|++..++. +...|++
T Consensus 360 ~~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~-G~~vlyis~E~s~~~~~----a~~lGvd 434 (2050)
T 3cmu_A 360 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY----ARKLGVD 434 (2050)
T ss_dssp SCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHH----HHHTTCC
T ss_pred CCceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCHHHHH----HHHcCCC
Confidence 45789999999999994 9999999999999999999999999999986 89999999999987763 3334543
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCC----CCC
Q 005200 524 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR----PVS 599 (709)
Q Consensus 524 ~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~----~~~ 599 (709)
.. ++++. ...+++++.+.++.++.+.++++||||++..+.... ..+
T Consensus 435 ~~-------------------------~L~I~-----~~~~~e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~G 484 (2050)
T 3cmu_A 435 ID-------------------------NLLCS-----QPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIG 484 (2050)
T ss_dssp TT-------------------------TCEEE-----CCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTT
T ss_pred HH-------------------------HeEEe-----CCCCHHHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccc
Confidence 22 12332 235688999999988888999999999776665200 011
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCC---CCCC
Q 005200 600 ----QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD---PEAG 671 (709)
Q Consensus 600 ----~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~---~e~~ 671 (709)
....+.+.+.+..|+.+|+++|++||+++| +++.+.+.+. | ..-.|+..+++.||++|.|+|.+. .+..
T Consensus 485 d~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~-p--~~psGg~ale~~ADv~l~L~R~~~~~~g~~~ 561 (2050)
T 3cmu_A 485 DSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN-P--ETTTGGNALKFYASVRLDIRRIGAVKEGENV 561 (2050)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSC-C--EECSSHHHHHHHEEEEEEEEEEEEEEETTEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCC-C--cCCCCcchhhhhCCEEEEEEecccccCCccc
Confidence 123456778888888899999999999999 6664433111 1 122588899999999999999752 1111
Q ss_pred CCCeEEEEEEeeeCCCcceeeeEEEEEE
Q 005200 672 PIDRVQVCVRKVRNKVVGTIGEAFLSYN 699 (709)
Q Consensus 672 ~~~~~~l~v~K~R~g~~G~~g~~~l~fd 699 (709)
....+++.+.|+|+++.|..+.+.+.|+
T Consensus 562 ~g~~~~v~V~KnR~gp~g~~~~f~I~~~ 589 (2050)
T 3cmu_A 562 VGSETRVKVVKNKIAAPFKQAEFQILYG 589 (2050)
T ss_dssp EEEEEEEEEEEESSSCSCCEEEEEEETT
T ss_pred cCcEEEEEEEecCCCCCCceEEEEEEeC
Confidence 1135689999999999998766665443
No 22
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.80 E-value=3.5e-19 Score=220.55 Aligned_cols=212 Identities=16% Similarity=0.120 Sum_probs=160.1
Q ss_pred Ccccccccchhhhhhhc---cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCC
Q 005200 447 DEFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 523 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~---l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~ 523 (709)
...+++||++.||.+++ +++|++++|+|+||+|||+|++|++.+++.+ |.+|+|||+|++..++. +...|++
T Consensus 360 ~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~-G~~vlyis~E~s~~~~~----a~~lGvd 434 (1706)
T 3cmw_A 360 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY----ARKLGVD 434 (1706)
T ss_dssp SCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHHH----HHHTTCC
T ss_pred cCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchHHHH----HHHcCCC
Confidence 45789999999999994 9999999999999999999999999999987 99999999999988753 3344554
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCC----CCC
Q 005200 524 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR----PVS 599 (709)
Q Consensus 524 ~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~----~~~ 599 (709)
... ++++ ...+.+++.+.++.++++.++++||||++..+.... ..+
T Consensus 435 ~~~-------------------------L~i~-----~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g 484 (1706)
T 3cmw_A 435 IDN-------------------------LLCS-----QPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIG 484 (1706)
T ss_dssp GGG-------------------------CEEE-----CCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTT
T ss_pred HHH-------------------------eEEc-----CCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhhcccccccccc
Confidence 321 2232 123578888888888888999999999877765310 001
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCC---CCCC
Q 005200 600 ----QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD---PEAG 671 (709)
Q Consensus 600 ----~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~---~e~~ 671 (709)
....+.+.+++..|+.+|+++||+||+++| +++.+.+.+. + ..-.|+..+++.||++|.|+|.+. .+..
T Consensus 485 ~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~-~--~~p~gg~ale~~ADv~L~L~R~~~~~~g~~~ 561 (1706)
T 3cmw_A 485 DSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN-P--ETTTGGNALKFYASVRLDIRRIGAVKEGENV 561 (1706)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSC-C--EEESSCSHHHHHEEEEEEEEEEEEEEETTEE
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCC-C--ccCCCCcceeeeCCEEEEEEeccccccCccc
Confidence 124456788999999999999999999999 7665433211 1 122478899999999999998752 1111
Q ss_pred CCCeEEEEEEeeeCCCcceeeeEEE
Q 005200 672 PIDRVQVCVRKVRNKVVGTIGEAFL 696 (709)
Q Consensus 672 ~~~~~~l~v~K~R~g~~G~~g~~~l 696 (709)
..+.+++.|.|+|+++.|..+.+.+
T Consensus 562 ~~~~~~l~V~KnR~gp~~~~~~F~I 586 (1706)
T 3cmw_A 562 VGSETRVKVVKNKIAAPFKQAEFQI 586 (1706)
T ss_dssp EEEEEEEEEEEESSSCSCCEEEEEE
T ss_pred cCcEEEEEEEecCCCCCCCeEEEEE
Confidence 1235789999999999988765544
No 23
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.80 E-value=1.4e-18 Score=181.33 Aligned_cols=233 Identities=14% Similarity=0.125 Sum_probs=145.7
Q ss_pred cccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHh---------cCCeEEEEECCCCHHHHHHHHHH
Q 005200 448 EFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEH---------AGWKFVLCSMENKVREHARKLLE 517 (709)
Q Consensus 448 ~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~---------~g~~Vly~SlE~~~~~~~~Rl~~ 517 (709)
...++||++.||.+++ +++|++++|.|+||+|||||+++++..++.. .+.+|+|+++|++..++..|+.+
T Consensus 10 ~~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~ 89 (279)
T 1nlf_A 10 LEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHA 89 (279)
T ss_dssp HHHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHH
T ss_pred HHHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHH
Confidence 3568999999999999 9999999999999999999999999976642 13689999999999888777655
Q ss_pred HHcCCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEec--CCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccC
Q 005200 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE--NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQ 595 (709)
Q Consensus 518 ~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~--~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~ 595 (709)
.... +.......+.+.+ .+.... .....+-.+ .+.+..++ .++++||||+...+...
T Consensus 90 ~g~~--------------~~~~~~~~~~~~l----~l~~~~~~~~~~ls~g~-~~~i~~l~--~~~~livlDe~~~~~~~ 148 (279)
T 1nlf_A 90 LGAH--------------LSAEERQAVADGL----LIQPLIGSLPNIMAPEW-FDGLKRAA--EGRRLMVLDTLRRFHIE 148 (279)
T ss_dssp HHTT--------------SCHHHHHHHHHHE----EECCCTTSCCCTTSHHH-HHHHHHHH--TTCSEEEEECGGGGCCS
T ss_pred HHhh--------------cChhhhhhccCce----EEeecCCCCcccCCHHH-HHHHHHhc--CCCCEEEECCHHHhcCC
Confidence 3221 1222222222222 111000 011112222 33444433 36999999988876543
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCC-------
Q 005200 596 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP------- 668 (709)
Q Consensus 596 ~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~------- 668 (709)
..+....+.+++..|+.++++.|++||+++|.++.....+..+..++.+||+.+...+..+..+.+..+.
T Consensus 149 ---d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~~~g~~~~~~~~~g~~~l~d~v~~~~~~~~~~~~~~~~~gi 225 (279)
T 1nlf_A 149 ---EENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGV 225 (279)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CTGGGCSCEEEEEECCHHHHHHTTC
T ss_pred ---CcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccCCchhhhhccchhhhccchhhhhhccCCCHHHHHHhCC
Confidence 2223456788999999999999999999999444322223445567889999998777776667665421
Q ss_pred -CCCCCCeEEEEEEeeeCCCcceeeeEEEEEEccccEEEc
Q 005200 669 -EAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 707 (709)
Q Consensus 669 -e~~~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~ 707 (709)
+......+++.+.|+|+++.|... .+.++ ++|.|.+
T Consensus 226 ~~~~~~~~~~~~v~K~~~~~~~~~~--~~~~~-~~G~l~~ 262 (279)
T 1nlf_A 226 DDDQRRFFVRFGVSKANYGAPFADR--WFRRH-DGGVLKP 262 (279)
T ss_dssp CTTSGGGEEEEEEEECSSSSCCCCE--EEEEC-GGGCEEE
T ss_pred ChhhcCcEEEeeeccccCCCCCCce--EEEEc-CCeeEec
Confidence 111124678999999999988863 34444 6787764
No 24
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=99.79 E-value=1.6e-18 Score=185.29 Aligned_cols=213 Identities=14% Similarity=0.096 Sum_probs=156.7
Q ss_pred cccccccchhhhhhhc---cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCc
Q 005200 448 EFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 524 (709)
Q Consensus 448 ~~gi~tg~~~LD~ll~---l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~ 524 (709)
...++||++.||.+++ +++|++++|+|+||+|||||+++++..++.. |.+|+|++.|++..... +...+++.
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyId~E~s~~~~r----a~rlgv~~ 113 (356)
T 3hr8_A 39 VEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFIDAEHALDPVY----AKNLGVDL 113 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHH----HHHHTCCG
T ss_pred CceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEecccccchHH----HHHcCCch
Confidence 5789999999999985 9999999999999999999999999999876 89999999998765441 12224322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCccccc-C--CC-CCC
Q 005200 525 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH-Q--RP-VSQ 600 (709)
Q Consensus 525 ~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~-~--~~-~~~ 600 (709)
. .+++. ...+.++++..++.++...++++||||++..+.. . .. .+.
T Consensus 114 ~-------------------------~l~i~-----~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~ 163 (356)
T 3hr8_A 114 K-------------------------SLLIS-----QPDHGEQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGD 163 (356)
T ss_dssp G-------------------------GCEEE-----CCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCS
T ss_pred h-------------------------hhhhh-----hccCHHHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchh
Confidence 1 12222 2346788888888887778899999999887764 1 11 111
Q ss_pred ----CHHHHHHHHHHHHHHHHHHhCcEEEEEeccC-CCCCCCCCCCccccccCchhhhcccceEEEEeeCCC---CCCCC
Q 005200 601 ----TETEYVSQMLTMVKRFAQHHACHVWFVAHPR-QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD---PEAGP 672 (709)
Q Consensus 601 ----~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~r-k~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~---~e~~~ 672 (709)
...+.+.++++.|+.+|+++|++||+++|.+ +...-. . +.....|+..+++.+|++|.+.+.+. .++..
T Consensus 164 ~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~f-g--~p~~~~GG~~l~h~~~~rl~l~k~~~~k~g~~~~ 240 (356)
T 3hr8_A 164 MQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMF-G--SPETTTGGLALKFYATMRMEVRRGEPIKEGKDVI 240 (356)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSS-C--SCSSCTHHHHHHHHCSEEEEEEEEEEEEETTEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccccc-C--CcccCCCcchhhhhCcEEEEEEeccccccCCccc
Confidence 1245677889999999999999999999954 332211 1 22456899999999999999998531 11101
Q ss_pred CCeEEEEEEeeeCCCcceeeeEEEEE
Q 005200 673 IDRVQVCVRKVRNKVVGTIGEAFLSY 698 (709)
Q Consensus 673 ~~~~~l~v~K~R~g~~G~~g~~~l~f 698 (709)
.+.+.+.+.|||.++.+..+.+.+.|
T Consensus 241 g~~~~vkvvKnr~~~~~~~~~f~i~~ 266 (356)
T 3hr8_A 241 GNVISVKIVKNKVAPPFKTAQTYIIY 266 (356)
T ss_dssp EEEEEEEEEEESSSCCCCEEEEEEET
T ss_pred ccEEEEEEEeCCCCCCCceEEEEEee
Confidence 23578999999999888876555543
No 25
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.78 E-value=9.5e-19 Score=190.49 Aligned_cols=210 Identities=14% Similarity=0.130 Sum_probs=138.2
Q ss_pred Ccccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHh-----cCCeEEEEECCCC--HHHHHHHHHH
Q 005200 447 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH-----AGWKFVLCSMENK--VREHARKLLE 517 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~-----~g~~Vly~SlE~~--~~~~~~Rl~~ 517 (709)
...+++||++.||++++ +++|++++|+|+||+|||||+.+++...+.. .+.+|+||+.|++ ..++.. ++
T Consensus 156 ~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~--~a 233 (400)
T 3lda_A 156 ELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS--IA 233 (400)
T ss_dssp TSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH--HH
T ss_pred cCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHH--HH
Confidence 45789999999999995 9999999999999999999999999887652 2578999999986 443332 23
Q ss_pred HHcCCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHH---HHHHHHHHHHHhcCCcEEEEccCccccc
Q 005200 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK---WVLDLAKAAVLRHGVRGLVIDPYNELDH 594 (709)
Q Consensus 518 ~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~---~i~~~i~~~~~~~~~~lIVID~~~~l~~ 594 (709)
...++. .+. .+ +.+++.+ ..+.+ +++..+..++...++++||||++..+..
T Consensus 234 ~~~gl~--------------~~~------vl-eni~~~~-----~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 234 QRFGLD--------------PDD------AL-NNVAYAR-----AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHTTCC--------------HHH------HH-HTEEEEE-----CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred HHcCCC--------------hHh------Hh-hcEEEec-----cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 333332 111 11 2233332 12233 3344445555667899999998887765
Q ss_pred CCCCC-C--C-HHHHHHHHHHHHHHHHHHhCcEEEEEecc-CCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCC
Q 005200 595 QRPVS-Q--T-ETEYVSQMLTMVKRFAQHHACHVWFVAHP-RQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669 (709)
Q Consensus 595 ~~~~~-~--~-~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~-rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e 669 (709)
....+ . . +.+.+.+++..|+++++++|++||+++|. +..+....-..+.....|+..+++.+|.+|.|++.+.
T Consensus 288 ~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~g-- 365 (400)
T 3lda_A 288 TDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGKG-- 365 (400)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECST--
T ss_pred hhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecCC--
Confidence 32111 1 1 22345789999999999999999999994 3332210000011123477889999999999998652
Q ss_pred CCCCCeEEEEEEeeeCCCcce
Q 005200 670 AGPIDRVQVCVRKVRNKVVGT 690 (709)
Q Consensus 670 ~~~~~~~~l~v~K~R~g~~G~ 690 (709)
..+.+.+.|+|+++.+.
T Consensus 366 ----~~R~l~v~K~R~~p~~e 382 (400)
T 3lda_A 366 ----CQRLCKVVDSPCLPEAE 382 (400)
T ss_dssp ----TEEEEEEEECSSSCSCE
T ss_pred ----CcEEEEEEcCCCCCCCc
Confidence 25789999999999887
No 26
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.78 E-value=7.7e-18 Score=180.66 Aligned_cols=206 Identities=16% Similarity=0.108 Sum_probs=146.5
Q ss_pred Ccccccccchhhhhhhc---cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCC
Q 005200 447 DEFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 523 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~---l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~ 523 (709)
...+++||++.||.+++ +++|++++|+|+||+|||+|+++++.+++.. |.+|+|+++|++..+.. +...|++
T Consensus 38 ~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~E~~~~~~~----a~~lG~~ 112 (349)
T 2zr9_A 38 PISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDAEHALDPEY----AKKLGVD 112 (349)
T ss_dssp CCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHH----HHHTTCC
T ss_pred cCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCcCHHH----HHHcCCC
Confidence 45789999999999984 9999999999999999999999999999987 99999999999865532 2333443
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCC--CCC--
Q 005200 524 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR--PVS-- 599 (709)
Q Consensus 524 ~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~--~~~-- 599 (709)
.. .++++ ...+.+++++.++.++.+.++++||||++..+.... ...
T Consensus 113 ~~-------------------------~l~i~-----~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~g 162 (349)
T 2zr9_A 113 TD-------------------------SLLVS-----QPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMG 162 (349)
T ss_dssp GG-------------------------GCEEE-----CCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC--
T ss_pred HH-------------------------HeEEe-----cCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccc
Confidence 22 12232 234578888888877777889999999888776210 000
Q ss_pred C----CHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCC---CCCC
Q 005200 600 Q----TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD---PEAG 671 (709)
Q Consensus 600 ~----~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~---~e~~ 671 (709)
. ...+.+.+++..|+.+++++|++||+++| .++.....+ .| ..-.|+..+++.||.++.++|.+. .+..
T Consensus 163 d~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~-~p--~~~~gg~~l~~~ad~~l~lrr~~~~k~g~~~ 239 (349)
T 2zr9_A 163 DSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG-SP--ETTTGGKALKFYASVRLDVRRIETLKDGTDA 239 (349)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------------CCSSHHHHHHHCSEEEEEEEEEEECSSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC-CC--cccCCchHhhhccceEEEEEEeeeeecCccc
Confidence 1 12235678889999999999999999999 554432111 11 122467889999999999998641 1111
Q ss_pred CCCeEEEEEEeeeCCCcce
Q 005200 672 PIDRVQVCVRKVRNKVVGT 690 (709)
Q Consensus 672 ~~~~~~l~v~K~R~g~~G~ 690 (709)
..+.+.+.|.|+|.++...
T Consensus 240 ~g~~~~~~i~K~~~~p~~~ 258 (349)
T 2zr9_A 240 VGNRTRVKVVKNKVSPPFK 258 (349)
T ss_dssp CEEEEEEEEEEESSSCCCC
T ss_pred cCCEEEEEeCCCccCCCCc
Confidence 1246789999999998443
No 27
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.77 E-value=9.2e-18 Score=170.56 Aligned_cols=209 Identities=14% Similarity=0.112 Sum_probs=132.2
Q ss_pred cccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhc-----CCeEEEEECCCC--HHHHHHHHHHH
Q 005200 448 EFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHA-----GWKFVLCSMENK--VREHARKLLEK 518 (709)
Q Consensus 448 ~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~-----g~~Vly~SlE~~--~~~~~~Rl~~~ 518 (709)
..+++||++.||++++ +++|++++|.|+||+|||+|+.+++.+++... +.+|+|++.|++ ..++..++..
T Consensus 3 ~~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~- 81 (243)
T 1n0w_A 3 IIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER- 81 (243)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHH-
T ss_pred ceEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHH-
Confidence 3679999999999994 99999999999999999999999998765521 679999999984 6655444321
Q ss_pred HcCCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHH---HHHHHHHHHHhcCCcEEEEccCcccccC
Q 005200 519 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW---VLDLAKAAVLRHGVRGLVIDPYNELDHQ 595 (709)
Q Consensus 519 ~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~---i~~~i~~~~~~~~~~lIVID~~~~l~~~ 595 (709)
.+. ..+++ + +++.++. ..+.++ ++..+..+....++++||||++..+...
T Consensus 82 -~g~--------------~~~~~------~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 82 -YGL--------------SGSDV------L-DNVAYAR-----AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp -TTC--------------CHHHH------H-HTEEEEE-----CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred -cCC--------------CHHHH------h-hCeEEEe-----cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 222 12111 1 2233332 123333 3334555566678999999988877643
Q ss_pred CCCC-C--CH-HHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCC
Q 005200 596 RPVS-Q--TE-TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA 670 (709)
Q Consensus 596 ~~~~-~--~~-~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~ 670 (709)
...+ . .+ ...+.+++..|+++++++|++||+++| .+....+..-..+...-.|+..+++.||.++.|++.+.
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~~--- 211 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRG--- 211 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECST---
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcCC---
Confidence 2111 0 11 224778999999999999999999999 54443210000000112577789999999999998532
Q ss_pred CCCCeEEEEEEeeeCCCcce
Q 005200 671 GPIDRVQVCVRKVRNKVVGT 690 (709)
Q Consensus 671 ~~~~~~~l~v~K~R~g~~G~ 690 (709)
..+.+.+.|+|+++.+.
T Consensus 212 ---~~r~l~v~K~r~~~~~~ 228 (243)
T 1n0w_A 212 ---ETRICKIYDSPCLPEAE 228 (243)
T ss_dssp ---TEEEEEECCBTTBSCEE
T ss_pred ---CeEEEEEEECCCCCCCe
Confidence 25689999999987653
No 28
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.75 E-value=1.1e-16 Score=161.35 Aligned_cols=207 Identities=14% Similarity=0.085 Sum_probs=144.3
Q ss_pred ccccccchhhhhhh-c-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccc
Q 005200 449 FGISTGWRALNELY-N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 526 (709)
Q Consensus 449 ~gi~tg~~~LD~ll-~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~ 526 (709)
.+++||++.||+++ | +++|++++|.|+||+|||||+.+++..++.. +.+|+|++.|++..++..++. ..+.....
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~ 79 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEESRDSIIRQAK--QFNWDFEE 79 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSSCHHHHHHHHH--HTTCCCGG
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcccCHHHHHHHHH--HhcchHHH
Confidence 47899999999998 4 9999999999999999999999999888876 889999999999888877764 34544433
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCc--EEEEccCcccccCCCCCCCHHH
Q 005200 527 ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR--GLVIDPYNELDHQRPVSQTETE 604 (709)
Q Consensus 527 i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~--lIVID~~~~l~~~~~~~~~~~~ 604 (709)
+... .+.. +......+. ..+. ....+.+++...+.......+++ +||||+...+...+ ..
T Consensus 80 ~~~~----~~~~--~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d------~~ 141 (235)
T 2w0m_A 80 YIEK----KLII--IDALMKEKE-DQWS-----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK------PA 141 (235)
T ss_dssp GBTT----TEEE--EECCC-----CTTB-----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC------GG
T ss_pred HhhC----CEEE--EeccccccC-ceee-----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC------HH
Confidence 2210 0000 000000000 1111 12337788887777777778999 99999877664321 12
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEee
Q 005200 605 YVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 683 (709)
Q Consensus 605 ~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~ 683 (709)
...+++..|+++++++|++||+++| .+...+ .. . ..+++.||.++.|++.+... .....+.|.|+
T Consensus 142 ~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~----~~-----~--~~~~~~~d~vi~l~~~~~~~---~~~r~l~v~K~ 207 (235)
T 2w0m_A 142 MARKISYYLKRVLNKWNFTIYATSQYAITTSQ----AF-----G--FGVEHVADGIIRFRRMIRNG---ELHRYILIEKM 207 (235)
T ss_dssp GHHHHHHHHHHHHHHTTEEEEEEEC----------------------CHHHHCSEEEEEEEEEETT---EEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccCccccc----cc-----c--cchheeeeEEEEEEEEecCC---cEEEEEEEEec
Confidence 3568899999999999999999999 542211 11 1 35889999999999876322 23578999999
Q ss_pred eCCCcce
Q 005200 684 RNKVVGT 690 (709)
Q Consensus 684 R~g~~G~ 690 (709)
|++..+.
T Consensus 208 r~~~~~~ 214 (235)
T 2w0m_A 208 RQTDHDK 214 (235)
T ss_dssp TTCCCCC
T ss_pred cCCcccc
Confidence 9987653
No 29
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=99.70 E-value=2.5e-16 Score=163.36 Aligned_cols=199 Identities=13% Similarity=0.094 Sum_probs=128.8
Q ss_pred cccccccchhhhhhh-----c-cCCCcEEEEEccCCCChHHHHHHHHHHHHHh-cCCeEEEEECCCCHHHHHHHHHHHHc
Q 005200 448 EFGISTGWRALNELY-----N-VLPGELTIVTGVPNSGKSEWIDALICNINEH-AGWKFVLCSMENKVREHARKLLEKHI 520 (709)
Q Consensus 448 ~~gi~tg~~~LD~ll-----~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~-~g~~Vly~SlE~~~~~~~~Rl~~~~~ 520 (709)
...++||++.||.+| | +++| +++|+|+||+|||+|++|++.+++++ .|.+|+|++.|.+..+. | +...
T Consensus 4 ~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~--r--a~~l 78 (333)
T 3io5_A 4 MDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA--Y--LRSM 78 (333)
T ss_dssp --CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH--H--HHHT
T ss_pred CCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH--H--HHHh
Confidence 457999999999998 4 9999 99999999999999999999999875 27899999999886543 2 2233
Q ss_pred CCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHH-HHHHHHH--HHhcCCcEEEEccCcccccCC-
Q 005200 521 KKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWV-LDLAKAA--VLRHGVRGLVIDPYNELDHQR- 596 (709)
Q Consensus 521 g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i-~~~i~~~--~~~~~~~lIVID~~~~l~~~~- 596 (709)
|++.. .+++.. ..+.+++ ++.++.+ +++..+++|||||+..+....
T Consensus 79 Gvd~d-------------------------~llv~~-----~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~e 128 (333)
T 3io5_A 79 GVDPE-------------------------RVIHTP-----VQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKE 128 (333)
T ss_dssp TCCGG-------------------------GEEEEE-----CSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--
T ss_pred CCCHH-------------------------HeEEEc-----CCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchh
Confidence 44322 123331 2356776 6655555 456679999999999987421
Q ss_pred -CCC--------CCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCC
Q 005200 597 -PVS--------QTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD 667 (709)
Q Consensus 597 -~~~--------~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~ 667 (709)
.+. ....+.+.+.+++|..+|+++|++||++.|.++...-. ..|. . .|...+ ..|.+-|.|.+...
T Consensus 129 ieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k~G~~f-g~p~--~-~GG~~l-~~ss~Rl~lrk~~~ 203 (333)
T 3io5_A 129 TEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYETQEMF-SKTV--M-GGGTGP-MYSADTVFIIGKRQ 203 (333)
T ss_dssp ------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-------------------CCG-GGGSSEEEEEEEC-
T ss_pred ccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeeecCccc-CCCC--C-CCccee-eeeeEEEEEEeccc
Confidence 111 13445677788888889999999999999966532212 2333 2 466667 78888888876441
Q ss_pred -CC--CCCCCeEEEEEEeeeCC
Q 005200 668 -PE--AGPIDRVQVCVRKVRNK 686 (709)
Q Consensus 668 -~e--~~~~~~~~l~v~K~R~g 686 (709)
++ .--.+.+.+.+.|+|--
T Consensus 204 ik~~~~~~G~~~~v~~~k~kv~ 225 (333)
T 3io5_A 204 IKDGSDLQGYQFVLNVEKSRTV 225 (333)
T ss_dssp ---------CEEEEEEEECSSB
T ss_pred cccCCccEEeEEEEeEEEEEEc
Confidence 11 11123556666776654
No 30
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.65 E-value=1.5e-15 Score=152.75 Aligned_cols=200 Identities=13% Similarity=0.126 Sum_probs=126.3
Q ss_pred Ccccccccchhhhhhh-c-cCCCcEEEEEccCCCChHHHHHHHHHHHHHh-----cCCeEEEEECCCC--HHHHHHHHHH
Q 005200 447 DEFGISTGWRALNELY-N-VLPGELTIVTGVPNSGKSEWIDALICNINEH-----AGWKFVLCSMENK--VREHARKLLE 517 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll-~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~-----~g~~Vly~SlE~~--~~~~~~Rl~~ 517 (709)
...+++||++.||+++ | +++|+++.|.|++|+|||||+..++...... .+..++|++.|.. ..++... .
T Consensus 3 ~~~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~-~- 80 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREI-A- 80 (231)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHH-H-
T ss_pred cCCccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHH-H-
Confidence 3568999999999999 4 9999999999999999999999998866541 1567999999875 3333222 1
Q ss_pred HHcCCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHH-----hcCCcEEEEccCccc
Q 005200 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL-----RHGVRGLVIDPYNEL 592 (709)
Q Consensus 518 ~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~-----~~~~~lIVID~~~~l 592 (709)
+..+ +.++ .+.+.+.+... ............+..+.. ..++++||||+....
T Consensus 81 ~~~~--------------~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 81 QNRG--------------LDPD-------EVLKHIYVARA--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp HHTT--------------SCHH-------HHHHTEEEEEC--CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred HHcC--------------CCHH-------HHhhcEEEEec--CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 1122 1221 11122233211 011111122334444444 568999999988776
Q ss_pred ccCCCCCCCH----HHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCC
Q 005200 593 DHQRPVSQTE----TEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP 668 (709)
Q Consensus 593 ~~~~~~~~~~----~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~ 668 (709)
......+... ...+.+++..|+++++++|++||+++|..+. ++..+++.||.++.+.+.+.
T Consensus 138 l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~--------------~g~~~~~~~d~~l~l~~~~~- 202 (231)
T 4a74_A 138 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAN--------------GGHILAHSATLRVYLRKGKG- 202 (231)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------------------CCSEEEEEEECTT-
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccC--------------cchhhHhhceEEEEEEecCC-
Confidence 5432111111 1235689999999999999999999994332 34568899999999998442
Q ss_pred CCCCCCeEEEEEEeeeCCCccee
Q 005200 669 EAGPIDRVQVCVRKVRNKVVGTI 691 (709)
Q Consensus 669 e~~~~~~~~l~v~K~R~g~~G~~ 691 (709)
....+.+.|+|+++.|..
T Consensus 203 -----~~r~l~~~K~r~~~~~~~ 220 (231)
T 4a74_A 203 -----GKRIARLIDAPHLPEGEA 220 (231)
T ss_dssp -----SCEEEEEESCC--CCSCE
T ss_pred -----CeEEEEEEeCCCCCCceE
Confidence 356799999999988774
No 31
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.63 E-value=1.7e-15 Score=189.55 Aligned_cols=182 Identities=15% Similarity=0.133 Sum_probs=140.8
Q ss_pred CCcccccccchhhhhhhc---cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCC
Q 005200 446 GDEFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 522 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~---l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~ 522 (709)
....+++||+++||++++ +++|++++|+|+||+|||+|++|++.+++.+ |.+|+|||+||+..++. +...|+
T Consensus 708 ~~~~~i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~-g~~VlyiS~Ees~~ql~----A~rlG~ 782 (2050)
T 3cmu_A 708 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY----ARKLGV 782 (2050)
T ss_dssp TSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHH----HHHTTC
T ss_pred cccceeecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECCCcHHHHH----HHHcCC
Confidence 356799999999999993 9999999999999999999999999999986 88999999999988874 222232
Q ss_pred CccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCccccc-C----C-
Q 005200 523 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH-Q----R- 596 (709)
Q Consensus 523 ~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~-~----~- 596 (709)
+. .++++. ...+++++.+.++++..+.++++||||++..+.. . .
T Consensus 783 ~~-------------------------~~l~i~-----~~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~ 832 (2050)
T 3cmu_A 783 DI-------------------------DNLLCS-----QPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI 832 (2050)
T ss_dssp CT-------------------------TTCEEE-----CCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCT
T ss_pred Cc-------------------------cceEEe-----cCCCHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCC
Confidence 11 123332 3477999999999988888999999996555543 1 1
Q ss_pred CCCCC--HHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeC
Q 005200 597 PVSQT--ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665 (709)
Q Consensus 597 ~~~~~--~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~ 665 (709)
++... ..+++.++++.|+.+|+++||+||+++| +|+.+.-. . +.....|+..+.+.+++.+.|.|.
T Consensus 833 Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r~~e~~f-g--dp~~p~GG~~l~h~a~~Rl~Lrr~ 901 (2050)
T 3cmu_A 833 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF-G--NPETTTGGNALKFYASVRLDIRRI 901 (2050)
T ss_dssp TCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCS-S--CCEECSSHHHHHHHEEEEEEEEEE
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccccchhhc-C--CCccccCCceeeeeeeEEEEEEee
Confidence 11111 1235788999999999999999999999 88775421 1 123345888999999999999876
No 32
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.59 E-value=7.9e-15 Score=157.47 Aligned_cols=210 Identities=13% Similarity=0.144 Sum_probs=135.9
Q ss_pred Ccccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHh--c---CCeEEEEECCCC--HHHHHHHHHH
Q 005200 447 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH--A---GWKFVLCSMENK--VREHARKLLE 517 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~--~---g~~Vly~SlE~~--~~~~~~Rl~~ 517 (709)
....++||++.||.+++ +++|+++.|.|+||+|||||+.+++..++.. . |.+|+|++.|.. ++++.. +.
T Consensus 109 ~~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~--i~ 186 (349)
T 1pzn_A 109 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIRE--IA 186 (349)
T ss_dssp TCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHH--HH
T ss_pred cCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHH--HH
Confidence 34689999999999986 9999999999999999999999999886421 2 368999999986 333322 11
Q ss_pred HHcCCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHh-----cCCcEEEEccCccc
Q 005200 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR-----HGVRGLVIDPYNEL 592 (709)
Q Consensus 518 ~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~-----~~~~lIVID~~~~l 592 (709)
+..+ +..+ .+.+.+.+.... ......+++..+..++.+ .++++||||+...+
T Consensus 187 q~~~--------------~~~~-------~v~~ni~~~~~~--~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 187 QNRG--------------LDPD-------EVLKHIYVARAF--NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HTTT--------------CCHH-------HHGGGEEEEECC--SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHcC--------------CCHH-------HHhhCEEEEecC--ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 1111 1111 122333333211 111133455566666666 68999999999887
Q ss_pred ccCCCCC-CC---HHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCC
Q 005200 593 DHQRPVS-QT---ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD 667 (709)
Q Consensus 593 ~~~~~~~-~~---~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~ 667 (709)
+.....+ .+ +...+.+++..|+++++++|++||+++| ........+. .....|+..+++.+|..|.+.+...
T Consensus 244 ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~---~~~~~~G~~l~~~~~~rL~l~~~~~ 320 (349)
T 1pzn_A 244 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGD---PTRPIGGHILAHSATLRVYLRKGKG 320 (349)
T ss_dssp HHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC------------------CCCCCTTCSEEEEEEECTT
T ss_pred hhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCC---ccccCCcceEeecCcEEEEEEEcCC
Confidence 6432111 11 1234778999999999999999999999 4333211111 1224567788999999999998652
Q ss_pred CCCCCCCeEEEEEEeeeCCCcce
Q 005200 668 PEAGPIDRVQVCVRKVRNKVVGT 690 (709)
Q Consensus 668 ~e~~~~~~~~l~v~K~R~g~~G~ 690 (709)
..+.+.+.|+|+++.|.
T Consensus 321 ------~~Ri~k~~ks~~~~~~~ 337 (349)
T 1pzn_A 321 ------GKRIARLIDAPHLPEGE 337 (349)
T ss_dssp ------SEEEEEESCSSSSCCSE
T ss_pred ------CeEEEEEEeCCCCCCeE
Confidence 25667788888877665
No 33
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.52 E-value=2.5e-13 Score=153.97 Aligned_cols=201 Identities=17% Similarity=0.204 Sum_probs=139.6
Q ss_pred Ccccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCc
Q 005200 447 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 524 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~ 524 (709)
...++++|++.||.+++ +++|++++|.|+||+|||||+.+++.....+ |.+++|+++|++..++..++.. .+
T Consensus 259 ~~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~~~l~~~~~~--~g--- 332 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESRAQLLRNAYS--WG--- 332 (525)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCHHHHHHHHHT--TS---
T ss_pred ccceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHHHHHHHHH--cC---
Confidence 45678999999999986 9999999999999999999999999887765 8899999999998887766521 11
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHH
Q 005200 525 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 604 (709)
Q Consensus 525 ~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~ 604 (709)
++.+++. ......+........+..+....+...+...+++++||||...+.... ...+
T Consensus 333 -----------~~~~~~~------~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~----~~~~ 391 (525)
T 1tf7_A 333 -----------MDFEEME------RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGV----SNNA 391 (525)
T ss_dssp -----------CCHHHHH------HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSS----CHHH
T ss_pred -----------CCHHHHH------hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhC----ChHH
Confidence 2222211 111111111112234566666666666667899999999888776532 1222
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCc-hhhhcccceEEEEeeCCCCCCCCCCeEEEEEEe
Q 005200 605 YVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGS-AHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRK 682 (709)
Q Consensus 605 ~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS-~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K 682 (709)
..+.+..|.+.+++.|++||+++| ..+.. +++++ ..+++.||.++.|..-+... ...+.+.+.|
T Consensus 392 -~~~~i~~ll~~l~~~g~tvilvsh~~~~~~----------~~~~~~~~l~~~~D~vi~L~~ge~~~---~~~R~l~v~K 457 (525)
T 1tf7_A 392 -FRQFVIGVTGYAKQEEITGLFTNTSDQFMG----------AHSITDSHISTITDTIILLQYVEIRG---EMSRAINVFK 457 (525)
T ss_dssp -HHHHHHHHHHHHHHTTCEEEEEEECSSSSC----------CCSSCSSCCTTTCSEEEEEEEEEETT---EEEEEEEEEE
T ss_pred -HHHHHHHHHHHHHhCCCEEEEEECcccccC----------cccccCcccceeeeEEEEEEEEEeCC---EEEEEEEEEE
Confidence 344444455555678999999999 43332 13444 55788999999998765221 2357899999
Q ss_pred eeCCCc
Q 005200 683 VRNKVV 688 (709)
Q Consensus 683 ~R~g~~ 688 (709)
+|.++.
T Consensus 458 ~R~~~~ 463 (525)
T 1tf7_A 458 MRGSWH 463 (525)
T ss_dssp ESSSCC
T ss_pred CCCCCC
Confidence 999987
No 34
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.52 E-value=4.7e-13 Score=136.22 Aligned_cols=216 Identities=16% Similarity=0.179 Sum_probs=129.9
Q ss_pred Ccccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHH-HhcCCeEEEEECCCCHHHHHHHHHHHHcCCC
Q 005200 447 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNIN-EHAGWKFVLCSMENKVREHARKLLEKHIKKP 523 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a-~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~ 523 (709)
...+++||++.||++++ +++|+++.|.|++|+|||||+..++...+ .. +..++|++.|.+..++..+. ...+..
T Consensus 8 ~~~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~g~~ 84 (251)
T 2ehv_A 8 PVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLEERARDLRREM--ASFGWD 84 (251)
T ss_dssp CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSSCHHHHHHHH--HTTTCC
T ss_pred ccceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEEccCCHHHHHHHH--HHcCCC
Confidence 35789999999999994 99999999999999999999999997777 44 89999999999988776554 223332
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHH-hcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCH
Q 005200 524 FFEANYGGSAERMTVEEFEQGKAWL-SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTE 602 (709)
Q Consensus 524 ~~~i~~g~~~~~l~~e~~~~~~~~l-~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~ 602 (709)
+...... ..++..+........ ....+.. .....++++...+.......+++++|+|+...+..... +.
T Consensus 85 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~---d~ 154 (251)
T 2ehv_A 85 FEKYEKE---GKIAIVDGVSSVVGLPSEEKFVL----EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE---EE 154 (251)
T ss_dssp HHHHHHT---TSEEEEC-----------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS---SG
T ss_pred hHHHhhc---CCEEEEEccccccccccccceec----cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC---CH
Confidence 2211000 000000000000000 0000000 12234667766666666678999999998776654211 11
Q ss_pred HHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhccc-ceEEEEeeCCCCCCCCCCeEEEEE
Q 005200 603 TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC-DNGIVIHRNRDPEAGPIDRVQVCV 680 (709)
Q Consensus 603 ~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~A-D~vl~l~r~~~~e~~~~~~~~l~v 680 (709)
....+.+..|.+.+++.|++||+++| ...... .+. ...+++.+ |.++.|.+.+... .....+.+
T Consensus 155 -~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~---------~~~-~~~i~~~~aD~vi~l~~~~~~~---~~~r~l~i 220 (251)
T 2ehv_A 155 -RKIREVLLKLNTILLEMGVTTILTTEAPDPQHG---------KLS-RYGIEEFIARGVIVLDLQEKNI---ELKRYVLI 220 (251)
T ss_dssp -GGHHHHHHHHHHHHHHHCCEEEEEECCC----C---------CSS-SSSCGGGGCSEEEEEEEEECSS---SEEEEEEE
T ss_pred -HHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcc---------ccc-ccChhhEeeeEEEEEeeeccCC---eeEEEEEE
Confidence 11223233333344567999999999 433210 011 13457787 9999998765322 23567899
Q ss_pred EeeeCCCcc
Q 005200 681 RKVRNKVVG 689 (709)
Q Consensus 681 ~K~R~g~~G 689 (709)
.|.|.+...
T Consensus 221 ~K~r~~~~~ 229 (251)
T 2ehv_A 221 RKMRETRHS 229 (251)
T ss_dssp EEETTCCCC
T ss_pred EEccCCCcC
Confidence 999987653
No 35
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.43 E-value=1.7e-12 Score=132.41 Aligned_cols=221 Identities=8% Similarity=-0.086 Sum_probs=130.3
Q ss_pred cccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCcccc
Q 005200 450 GISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 527 (709)
Q Consensus 450 gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i 527 (709)
.++||++.||++++ +++|.+++|.|.||+|||+|++|++.+.+.+ |.+++|+++|+++.++.+++.+ .|.++..+
T Consensus 2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~-Ge~~~~~~~~e~~~~l~~~~~~--~G~dl~~~ 78 (260)
T 3bs4_A 2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKS-DNLVGMFSISYPLQLIIRILSR--FGVDVIKY 78 (260)
T ss_dssp CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHT-TCEEEEEECSSCHHHHHHHHHH--TTCCHHHH
T ss_pred cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHC-CCcEEEEEEeCCHHHHHHHHHH--cCCCHHHH
Confidence 47899999999997 9999999999999999999999999999988 9999999999999999988854 45554432
Q ss_pred -ccCCCCCCCCHHHHHHHHHHHhc---CcceEEecCCCCCCHHHHHHHHHHHHHh----------cC-Cc-EEEEccCcc
Q 005200 528 -NYGGSAERMTVEEFEQGKAWLSN---TFSLIRCENDSLPSIKWVLDLAKAAVLR----------HG-VR-GLVIDPYNE 591 (709)
Q Consensus 528 -~~g~~~~~l~~e~~~~~~~~l~~---~~~~i~~~~~~~~~i~~i~~~i~~~~~~----------~~-~~-lIVID~~~~ 591 (709)
..| .+..-+. ....+.. ..+++. .....+++++...++.++.. .+ .+ ++|||++..
T Consensus 79 ~~~g----~l~i~d~--~~~~~~~~~~~~~v~~--~~~e~d~~~l~~~i~~iv~~~~~~~~i~~~~~~~rvv~vidslds 150 (260)
T 3bs4_A 79 LENH----RLAIVDT--FGSFHGIKATMPGVWY--LEGMLSSETLPIKYAKAVEDHKKVWMDLNLFEGRELYGFAISMSG 150 (260)
T ss_dssp HHTT----SEEEECH--HHHHHTC---CTTEEC--CCSCCCTTTHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEEETGGG
T ss_pred hhCC----cEEEEEc--ccccccccccccceec--ccccCCHHHHHHHHHHHHHhhccccchhhccCCceEEEEEeecch
Confidence 111 1100000 0011111 111221 01134556664444444443 24 45 457776665
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHH-----HHHH-hCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeC
Q 005200 592 LDHQRPVSQTETEYVSQMLTMVKR-----FAQH-HACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665 (709)
Q Consensus 592 l~~~~~~~~~~~~~~~~i~~~Lk~-----lA~~-~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~ 665 (709)
+.... ........+...+.. +..+ .+++.+++.+ ..... .....+...||.||.+...
T Consensus 151 l~~~~----~~~~~~~~~~~ll~~~~~~~~~~~~~~~ttil~~~-~~~~~-----------~~~~~l~~laD~VI~lr~~ 214 (260)
T 3bs4_A 151 YLEVF----TPEETLRYLETSAEVRYGHPAYKKYPRGTNFWLWE-GVKDK-----------RVLLSVYRRADYVLKTRSS 214 (260)
T ss_dssp GGGTS----CHHHHHHHHHHHHHHHHHCHHHHSSCCCEEEEEEE-SCSCH-----------HHHHHHHHHCSEEEEEEEE
T ss_pred HHHHh----ChhhHHHHHHHHHHhhhhHHHHhccCCcEEEEEEC-CCccc-----------ccccceEEEeeEEEEEEEE
Confidence 54321 232222223332222 3334 6777777765 11110 1124567889999999876
Q ss_pred CCCCCCCCCeEEEEEEeeeCCCcceeeeEEEEEEcc
Q 005200 666 RDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRV 701 (709)
Q Consensus 666 ~~~e~~~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~ 701 (709)
+.+. .-...|.|.|.|.+..-. +.-.+.|...
T Consensus 215 e~~g---~~rR~L~V~K~Rg~~~~~-~~re~~i~~~ 246 (260)
T 3bs4_A 215 LGEN---GIKRELLVIKTPKPIEEL-VRFEYEFKGN 246 (260)
T ss_dssp EETT---EEEEEEEEEECCC------CEEEEEEETT
T ss_pred ecCC---ceEEEEEEEECCCCCcCC-ceEEEEEecC
Confidence 5321 124689999999865432 2224555544
No 36
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=99.14 E-value=6.2e-12 Score=109.96 Aligned_cols=62 Identities=18% Similarity=0.286 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCcccccccCCceeeeecCCCCCCCCCCCceEEEEeeCCCeeEEEEeccccccccccccccccc
Q 005200 117 WEILKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNN 190 (709)
Q Consensus 117 ~~~l~~~L~~~Gi~~~~~~~G~~~~~~CPfc~~~~~~~~s~sv~i~~~~~~~~~~Cf~~~Cg~~G~~~~~~~~~ 190 (709)
...|.+++.++ ++++ +.|++++++||||+++ +|||+|+.. ++.||||+ ||.+|++++|++..
T Consensus 16 ~~~i~~v~~~~-~~lk--~~G~~~~~~CPfh~e~---~pSf~V~~~----k~~~~Cf~--cg~gGd~i~fv~~~ 77 (103)
T 1d0q_A 16 GVDIVDVIGEY-VQLK--RQGRNYFGLCPFHGEK---TPSFSVSPE----KQIFHCFG--CGAGGNAFTFLMDI 77 (103)
T ss_dssp HCCHHHHHTTT-SCCE--EETTEEEECCSSSCCS---SCCEEEETT----TTEEEETT--TCCEECHHHHHHHH
T ss_pred cCCHHHHHHHh-CCee--ecCCeEEEECCCCCCC---CCcEEEEcC----CCEEEECC--CCCCCCHHHHHHHH
Confidence 56677888887 5554 5799999999999985 688888765 79999998 99999999999765
No 37
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.02 E-value=4.8e-10 Score=116.95 Aligned_cols=125 Identities=20% Similarity=0.174 Sum_probs=90.0
Q ss_pred cccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC--CCCHHHHHHHHHHHHcCCCccc
Q 005200 450 GISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM--ENKVREHARKLLEKHIKKPFFE 526 (709)
Q Consensus 450 gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl--E~~~~~~~~Rl~~~~~g~~~~~ 526 (709)
-++||++.||.+++ +++|.+++|.|+||+|||+|+++++.+ + |.+|+|+++ +++ ++.
T Consensus 105 ~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~---~-G~~VlyIs~~~eE~--------------v~~-- 164 (331)
T 2vhj_A 105 ELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA---L-GGKDKYATVRFGEP--------------LSG-- 164 (331)
T ss_dssp TCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH---H-HTTSCCEEEEBSCS--------------STT--
T ss_pred ccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh---C-CCCEEEEEecchhh--------------hhh--
Confidence 36799999999998 999999999999999999999999887 3 789999999 333 000
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCC--C-CCHH
Q 005200 527 ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV--S-QTET 603 (709)
Q Consensus 527 i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~--~-~~~~ 603 (709)
+ . .+.+.+...+.....+.+ +||||++..+...... . ....
T Consensus 165 ---------~-----------------------~--~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~~G~v~ 208 (331)
T 2vhj_A 165 ---------Y-----------------------N--TDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNTTSGGIS 208 (331)
T ss_dssp ---------C-----------------------B--CCHHHHHHHHHHHHHHCS--EEEEECCTTTC-----------CC
T ss_pred ---------h-----------------------h--cCHHHHHHHHHHHHhhCC--EEEEecccccccccccccccchHH
Confidence 0 0 124455555555455555 9999998877432110 0 0012
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005200 604 EYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 604 ~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
+.+.+++.+|..++++.|++|+++.++
T Consensus 209 ~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 209 RGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 457889999999999999999887763
No 38
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.82 E-value=2.8e-07 Score=104.19 Aligned_cols=202 Identities=12% Similarity=0.101 Sum_probs=121.1
Q ss_pred cccccccchhhhhhh-c-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCcc
Q 005200 448 EFGISTGWRALNELY-N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 525 (709)
Q Consensus 448 ~~gi~tg~~~LD~ll-~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~ 525 (709)
...+++|.+.||++. | +++|++++|.|++|+|||||+.++++..+...+...+|++.+.+..++..+. ...|..++
T Consensus 18 ~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~--~~~g~~~q 95 (525)
T 1tf7_A 18 IAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNA--RSFGWDLA 95 (525)
T ss_dssp CCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHH--GGGTCCHH
T ss_pred cccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHH--HHcCCChH
Confidence 457888999999985 4 9999999999999999999999986555544467799999998766544332 22333222
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhcCcceEEecC-------CCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCC
Q 005200 526 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN-------DSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598 (709)
Q Consensus 526 ~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~-------~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~ 598 (709)
. .. ....+..+.... -....++.+...+.......++++|+||+.+.+...
T Consensus 96 ~--------------~~-----~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~--- 153 (525)
T 1tf7_A 96 K--------------LV-----DEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ--- 153 (525)
T ss_dssp H--------------HH-----HTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT---
T ss_pred H--------------hh-----ccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh---
Confidence 1 11 001111111100 011123444444433334467999999987765432
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEE
Q 005200 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQV 678 (709)
Q Consensus 599 ~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l 678 (709)
...+.....++..-++.+++ .|++||+++|.-.... . .......++.||.++.|...+.. + .....+
T Consensus 154 ~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~---~------~~~~~i~~~laD~vi~L~~~~~~--G-~~~r~l 220 (525)
T 1tf7_A 154 YDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYG---P------IARYGVEEFVSDNVVILRNVLEG--E-RRRRTL 220 (525)
T ss_dssp TCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSS---C------SSTTSCHHHHCSEEEEEEEECST--T-CCEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCcc---c------cccccceeeeeeEEEEEEEEccC--C-ceeEEE
Confidence 12344445566666666655 6999999999422211 0 00101124569999999875431 1 124567
Q ss_pred EEEeeeCC
Q 005200 679 CVRKVRNK 686 (709)
Q Consensus 679 ~v~K~R~g 686 (709)
.+.|.|..
T Consensus 221 ~~~k~r~~ 228 (525)
T 1tf7_A 221 EILKLRGT 228 (525)
T ss_dssp EEEEETTS
T ss_pred EEEECCCC
Confidence 77787753
No 39
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.61 E-value=4.5e-08 Score=97.67 Aligned_cols=145 Identities=11% Similarity=0.093 Sum_probs=92.0
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 543 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~ 543 (709)
-.+|.+++++|++|+||||.+++++.+++.+ |.+|+++..+.... ....+....|....
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~~~~-g~kVli~~~~~d~r--~~~~i~srlG~~~~------------------ 67 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRLEYA-DVKYLVFKPKIDTR--SIRNIQSRTGTSLP------------------ 67 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCCGG--GCSSCCCCCCCSSC------------------
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEEeccCch--HHHHHHHhcCCCcc------------------
Confidence 4578999999999999999999999999886 99999998876532 11100000111000
Q ss_pred HHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcE
Q 005200 544 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623 (709)
Q Consensus 544 ~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~ 623 (709)
...+ .+.+++.+.+........+++||||....+. .++++.|..++.. +++
T Consensus 68 --------~~~~-------~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~-------------~~~ve~l~~L~~~-gi~ 118 (223)
T 2b8t_A 68 --------SVEV-------ESAPEILNYIMSNSFNDETKVIGIDEVQFFD-------------DRICEVANILAEN-GFV 118 (223)
T ss_dssp --------CEEE-------SSTHHHHHHHHSTTSCTTCCEEEECSGGGSC-------------THHHHHHHHHHHT-TCE
T ss_pred --------cccc-------CCHHHHHHHHHHHhhCCCCCEEEEecCccCc-------------HHHHHHHHHHHhC-CCe
Confidence 0111 1234555554443333468999999765542 1244555666664 999
Q ss_pred EEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005200 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 624 Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
||++.+...-.++ -+.++..+...||.|.-|..-.
T Consensus 119 Vil~Gl~~df~~~--------~F~~~~~Ll~lAD~V~el~~ic 153 (223)
T 2b8t_A 119 VIISGLDKNFKGE--------PFGPIAKLFTYADKITKLTAIC 153 (223)
T ss_dssp EEEECCSBCTTSS--------BCTTHHHHHHHCSEEEECCEEC
T ss_pred EEEEeccccccCC--------cCCCcHHHHHHhheEeecceec
Confidence 9999993333221 2556778889999998876544
No 40
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=98.55 E-value=1e-07 Score=84.00 Aligned_cols=71 Identities=20% Similarity=0.328 Sum_probs=56.8
Q ss_pred CeEEEEcChhhHHHHHHhCCceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCcCE-EEEEecCChhhHHHHH
Q 005200 294 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR-IILATDGDPPGQALAE 372 (709)
Q Consensus 294 ~~viI~EG~~DaLsl~q~g~~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~~~-Ivi~~DnD~aG~~aa~ 372 (709)
+.++||||..|+.+++++|+.++++. +|++ |+ ++...|...++ |+|++|+|.+|++++.
T Consensus 21 ~~vIvVEGk~D~~~L~~~g~~~iI~t-~Gta-------l~------------~~i~~l~~~~~~VIIltD~D~aGe~ir~ 80 (118)
T 1t6t_1 21 EAVILVEGKNDKKALSKFSIKNVIDL-SGKR-------YA------------DVVDMLEGKWEKVILLFDLDTHGERINQ 80 (118)
T ss_dssp TSEEEESSHHHHHHHHTTTCCCEEEC-TTSC-------HH------------HHHHHHTTTCSEEEECCCSSHHHHHHHH
T ss_pred CcEEEEEChHHHHHHHHhCcCcEEEE-CCCc-------HH------------HHHHHHHhCCCEEEEEECCChhHHHHHH
Confidence 67999999999999999999999984 5775 22 12344554556 9999999999999999
Q ss_pred HHHHHhCCcceE
Q 005200 373 ELARRVGRERCW 384 (709)
Q Consensus 373 ~~a~~l~~~~~~ 384 (709)
++.+.|+...++
T Consensus 81 ~i~~~l~~~~~~ 92 (118)
T 1t6t_1 81 KMKELLSSQGFL 92 (118)
T ss_dssp HHHHHHHHTTCE
T ss_pred HHHHhcCccCce
Confidence 999999654454
No 41
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.75 E-value=9.8e-05 Score=72.52 Aligned_cols=141 Identities=11% Similarity=0.088 Sum_probs=83.3
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 543 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~ 543 (709)
-.+|.|.+++|+.|+||||.+++++.++..+ |.+|+++........-...+.+ ..|.....+
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~kVli~k~~~d~R~ge~~i~s-~~g~~~~a~---------------- 86 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFA-KQHAIVFKPCIDNRYSEEDVVS-HNGLKVKAV---------------- 86 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEECC------------------CCEE----------------
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCCcchHHHHHh-hcCCeeEEe----------------
Confidence 4678999999999999999999999999877 9999999866442211111111 112211110
Q ss_pred HHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcE
Q 005200 544 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623 (709)
Q Consensus 544 ~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~ 623 (709)
.+ ...+++.+.+. ..+++|+||-.+.+.. +.+..|..++.+ +++
T Consensus 87 ----------~~-------~~~~~~~~~~~-----~~~dvViIDEaQF~~~-------------~~V~~l~~l~~~-~~~ 130 (214)
T 2j9r_A 87 ----------PV-------SASKDIFKHIT-----EEMDVIAIDEVQFFDG-------------DIVEVVQVLANR-GYR 130 (214)
T ss_dssp ----------EC-------SSGGGGGGGCC-----SSCCEEEECCGGGSCT-------------THHHHHHHHHHT-TCE
T ss_pred ----------ec-------CCHHHHHHHHh-----cCCCEEEEECcccCCH-------------HHHHHHHHHhhC-CCE
Confidence 00 00112222111 2489999995544311 123556666654 999
Q ss_pred EEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005200 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 624 Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
||+......-.+ .-+.++..+...||.|.-|..-.
T Consensus 131 Vi~~Gl~~DF~~--------~~F~~~~~Ll~~AD~Vtel~aiC 165 (214)
T 2j9r_A 131 VIVAGLDQDFRG--------LPFGQVPQLMAIAEHVTKLQAVC 165 (214)
T ss_dssp EEEEECSBCTTS--------CBCTTHHHHHHHCSEEEECCCBC
T ss_pred EEEEeccccccc--------CccccHHHHHHhcccEEeeeeEe
Confidence 999887322222 12678889999999998876544
No 42
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.63 E-value=0.00016 Score=74.28 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=42.4
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++| .+.++.+ ......+++.|++++++.|.+||+++|.-.. +...||
T Consensus 159 ~~~P~lLlLD-------EPts~LD-~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~------------------~~~~~d 212 (275)
T 3gfo_A 159 VMEPKVLILD-------EPTAGLD-PMGVSEIMKLLVEMQKELGITIIIATHDIDI------------------VPLYCD 212 (275)
T ss_dssp TTCCSEEEEE-------CTTTTCC-HHHHHHHHHHHHHHHHHHCCEEEEEESCCSS------------------GGGGCS
T ss_pred HcCCCEEEEE-------CccccCC-HHHHHHHHHHHHHHHhhCCCEEEEEecCHHH------------------HHHhCC
Confidence 4689999999 2223333 3344678888888885559999999994221 346788
Q ss_pred eEEEEee
Q 005200 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.+++|..
T Consensus 213 rv~~l~~ 219 (275)
T 3gfo_A 213 NVFVMKE 219 (275)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 8888864
No 43
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.60 E-value=0.00029 Score=67.26 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=35.9
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
+.+|+.++|.|+||+|||+++..++..+....|..++|++.+
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 567899999999999999999999988874558899887643
No 44
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.59 E-value=9.3e-05 Score=71.81 Aligned_cols=138 Identities=15% Similarity=0.113 Sum_probs=82.2
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG 544 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~ 544 (709)
.+|.+.++.|+.|+||||.+++++.++..+ |.+|+++...... |. +. ..+.. .+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~-g~kV~v~k~~~d~-----r~-----~~--~~i~s-----~~g------- 60 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIA-KQKIQVFKPEIDN-----RY-----SK--EDVVS-----HMG------- 60 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC-------------------CEEEC-----TTS-------
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCc-----cc-----hH--HHHHh-----hcC-------
Confidence 568899999999999999999999999876 9999999754321 11 00 00100 000
Q ss_pred HHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEE
Q 005200 545 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624 (709)
Q Consensus 545 ~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~V 624 (709)
+......+ . +.+++.+.+. ...++|+||-...+. + +.+..|+.++.. +++|
T Consensus 61 ---~~~~a~~~----~---~~~~i~~~~~-----~~~dvViIDEaqfl~--------~-----~~v~~l~~l~~~-~~~V 111 (191)
T 1xx6_A 61 ---EKEQAVAI----K---NSREILKYFE-----EDTEVIAIDEVQFFD--------D-----EIVEIVNKIAES-GRRV 111 (191)
T ss_dssp ---CEEECEEE----S---SSTHHHHHCC-----TTCSEEEECSGGGSC--------T-----HHHHHHHHHHHT-TCEE
T ss_pred ---CceeeEee----C---CHHHHHHHHh-----ccCCEEEEECCCCCC--------H-----HHHHHHHHHHhC-CCEE
Confidence 00001111 1 1123333221 247999999544331 1 234566777765 9999
Q ss_pred EEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEee
Q 005200 625 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664 (709)
Q Consensus 625 i~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r 664 (709)
|+......-.+ .-+.++..+...||.|.-+.-
T Consensus 112 i~~Gl~~df~~--------~~F~~~~~L~~~AD~V~el~~ 143 (191)
T 1xx6_A 112 ICAGLDMDFRG--------KPFGPIPELMAIAEFVDKIQA 143 (191)
T ss_dssp EEEECSBCTTS--------CBCTTHHHHHHHCSEEEECCE
T ss_pred EEEeccccccc--------CcCccHHHHHHHcccEEeeee
Confidence 99876322221 125678889999999876653
No 45
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.55 E-value=6e-05 Score=72.91 Aligned_cols=133 Identities=12% Similarity=0.091 Sum_probs=84.9
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHH---HHHHHHHHHcCCCccccccCCCCCCCCHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE---HARKLLEKHIKKPFFEANYGGSAERMTVEEF 541 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~---~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~ 541 (709)
..|.|.+++|+.|+|||+.+++.+.+...+ |.+|+|+..+...+. +..|+ |
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~~D~R~~~~i~S~~-----g-------------------- 71 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYSSSFCTHD-----R-------------------- 71 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEETTCCCGGGSCCHHH-----H--------------------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccccCccchhhhhhcc-----C--------------------
Confidence 458999999999999999999999998877 999999997754221 11111 0
Q ss_pred HHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhC
Q 005200 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHA 621 (709)
Q Consensus 542 ~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~ 621 (709)
+...-..+ .+.+++.+. ...+++|+||-...+ . + +.+.+..++ +.|
T Consensus 72 ------~~~~A~~~-------~~~~d~~~~------~~~~DvIlIDEaQFf-k-------~------~ve~~~~L~-~~g 117 (195)
T 1w4r_A 72 ------NTMEALPA-------CLLRDVAQE------ALGVAVIGIDEGQFF-P-------D------IVEFCEAMA-NAG 117 (195)
T ss_dssp ------HHSEEEEE-------SSGGGGHHH------HHTCSEEEESSGGGC-T-------T------HHHHHHHHH-HTT
T ss_pred ------Ccccceec-------CCHHHHHHh------ccCCCEEEEEchhhh-H-------H------HHHHHHHHH-HCC
Confidence 00000111 123344332 235899999965554 2 1 223335566 689
Q ss_pred cEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeC
Q 005200 622 CHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665 (709)
Q Consensus 622 i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~ 665 (709)
++||+......-.+ .-+.|+..+...||.|.-|.--
T Consensus 118 k~VI~~GL~~DF~~--------~~F~~~~~Ll~~Ad~v~kl~ai 153 (195)
T 1w4r_A 118 KTVIVAALDGTFQR--------KPFGAILNLVPLAESVVKLTAV 153 (195)
T ss_dssp CEEEEEEESBCTTS--------SBCTTGGGGGGGCSEEEECCEE
T ss_pred CeEEEEeccccccc--------ccchhHHHHHHhcCeEEEeeeE
Confidence 99999887333222 1267888899999998876543
No 46
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.51 E-value=0.00018 Score=71.30 Aligned_cols=136 Identities=12% Similarity=0.075 Sum_probs=81.8
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG 544 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~ 544 (709)
..|.+.+++|+.|+||||.+++.+.++... |.+|+++......+.- ..+.+. .|.....
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~-g~kvli~kp~~D~Ryg-~~i~sr-~G~~~~a------------------ 75 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYS-SSFCTH-DRNTMEA------------------ 75 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEEEETTCCCC-------------CEE------------------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEeecCCccch-HHHHhh-cCCeeEE------------------
Confidence 458999999999999999999999998876 9999999866442211 122111 1221110
Q ss_pred HHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEE
Q 005200 545 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624 (709)
Q Consensus 545 ~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~V 624 (709)
..+ . +.+++.+.+ ..+++|+||-.+.+. . +.++++ +..+.+++|
T Consensus 76 --------~~i----~---~~~di~~~~------~~~dvViIDEaQF~~-------~----v~el~~----~l~~~gi~V 119 (234)
T 2orv_A 76 --------LPA----C---LLRDVAQEA------LGVAVIGIDEGQFFP-------D----IVEFCE----AMANAGKTV 119 (234)
T ss_dssp --------EEE----S---SGGGGHHHH------TTCSEEEESSGGGCT-------T----HHHHHH----HHHHTTCEE
T ss_pred --------Eec----C---CHHHHHHHh------ccCCEEEEEchhhhh-------h----HHHHHH----HHHhCCCEE
Confidence 011 1 112333322 458999999554441 1 333443 333489999
Q ss_pred EEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeC
Q 005200 625 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665 (709)
Q Consensus 625 i~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~ 665 (709)
|+......-.++ -+.++..+...||.|.-|..-
T Consensus 120 I~~GL~~DF~~~--------~F~~~~~Ll~~AD~VtelkaI 152 (234)
T 2orv_A 120 IVAALDGTFQRK--------PFGAILNLVPLAESVVKLTAV 152 (234)
T ss_dssp EEECCSBCTTSS--------BCTTGGGGGGGCSEEEECCEE
T ss_pred EEEecccccccC--------CcccHHHHHHhcccEEeeeeE
Confidence 998874333221 266778888999998776543
No 47
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.49 E-value=0.0014 Score=71.51 Aligned_cols=40 Identities=18% Similarity=0.362 Sum_probs=36.2
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
++.+++++|++|+||||++..+|..++.+ |.+|++++.+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~-G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR-GYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 35699999999999999999999998876 99999999874
No 48
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=97.44 E-value=0.00059 Score=60.20 Aligned_cols=78 Identities=19% Similarity=0.223 Sum_probs=56.1
Q ss_pred CeEEEEcChhhHHHHHHhC--CceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCcCEEEEEecCChhhHHHH
Q 005200 294 SDIIIVEGEMDKLSMEEAG--FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALA 371 (709)
Q Consensus 294 ~~viI~EG~~DaLsl~q~g--~~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~~~Ivi~~DnD~aG~~aa 371 (709)
+.++||||-.|..++.+++ ..+++++ +|+ - +... . ..+..+...+.|++++|+|.+|.+-.
T Consensus 5 ~~vIVVEGk~D~~~L~~~~~~~~~iI~t-~Gs-i-------~~~~----l----~~I~~~~~~r~VIi~TD~D~~GekIR 67 (119)
T 2fcj_A 5 EKVIIVEGRSDKQKVAAVLNEPVVIVCT-NGT-I-------SDAR----L----EELADELEGYDVYLLADADEAGEKLR 67 (119)
T ss_dssp CEEEEESSHHHHHHHHHHBSSCCEEEEC-CSC-C-------CHHH----H----HHHHHHTTTSEEEEECCSSHHHHHHH
T ss_pred CeEEEEechHHHHHHHHhcCCCCCEEEe-CCc-c-------CHHH----H----HHHHHHhcCCCEEEEECCCccHHHHH
Confidence 5799999999999999997 4567774 455 2 2110 0 01223334689999999999999999
Q ss_pred HHHHHHhCCcceEEEEcCC
Q 005200 372 EELARRVGRERCWRVRWPK 390 (709)
Q Consensus 372 ~~~a~~l~~~~~~iv~~P~ 390 (709)
+.+.+.++. +....+|.
T Consensus 68 k~i~~~lp~--~~hafi~r 84 (119)
T 2fcj_A 68 RQFRRMFPE--AEHLYIDR 84 (119)
T ss_dssp HHHHHHCTT--SEEECCCT
T ss_pred HHHHHHCCC--CcEEeccC
Confidence 999999965 34555563
No 49
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.31 E-value=0.0011 Score=66.44 Aligned_cols=60 Identities=10% Similarity=0.125 Sum_probs=43.1
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|- +.++.+ .....++++.|++++++.+.+||+++|.-. +...||
T Consensus 161 ~~~p~llllDE-------Pts~LD-~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~-------------------~~~~~d 213 (235)
T 3tif_A 161 ANNPPIILADQ-------PTWALD-SKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-------------------VARFGE 213 (235)
T ss_dssp TTCCSEEEEES-------TTTTSC-HHHHHHHHHHHHHHHHHHCCEEEEECSCHH-------------------HHTTSS
T ss_pred HcCCCEEEEeC-------CcccCC-HHHHHHHHHHHHHHHHHcCCEEEEEcCCHH-------------------HHHhCC
Confidence 46799999992 223333 344567888888998888999999999411 124689
Q ss_pred eEEEEee
Q 005200 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.+++|..
T Consensus 214 ~i~~l~~ 220 (235)
T 3tif_A 214 RIIYLKD 220 (235)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9988863
No 50
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.30 E-value=0.0052 Score=63.74 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=36.9
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
|.++++.|++|+||||++.+++..++.. |.+|++++.+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 7899999999999999999999999876 999999999853
No 51
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.29 E-value=0.0009 Score=65.57 Aligned_cols=141 Identities=15% Similarity=0.093 Sum_probs=85.2
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 543 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~ 543 (709)
-..|.+.+|+|+-|+||||.+++.+.++... |.+|+++........-... +....|.....
T Consensus 25 ~~~G~I~vitG~M~sGKTT~Llr~~~r~~~~-g~kvli~kp~~D~R~~~~~-I~Sr~G~~~~a----------------- 85 (219)
T 3e2i_A 25 YHSGWIECITGSMFSGKSEELIRRLRRGIYA-KQKVVVFKPAIDDRYHKEK-VVSHNGNAIEA----------------- 85 (219)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEEC------------CBTTBCCEE-----------------
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHc-CCceEEEEeccCCcchhhh-HHHhcCCceee-----------------
Confidence 5679999999999999999999998888766 9999999876543321111 12222221111
Q ss_pred HHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcE
Q 005200 544 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623 (709)
Q Consensus 544 ~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~ 623 (709)
..+ .+.++|.+.+ ..++++|+||-...+. .+++..|..+| +.|++
T Consensus 86 ---------~~v-------~~~~di~~~i-----~~~~dvV~IDEaQFf~-------------~~~v~~l~~la-~~gi~ 130 (219)
T 3e2i_A 86 ---------INI-------SKASEIMTHD-----LTNVDVIGIDEVQFFD-------------DEIVSIVEKLS-ADGHR 130 (219)
T ss_dssp ---------EEE-------SSGGGGGGSC-----CTTCSEEEECCGGGSC-------------THHHHHHHHHH-HTTCE
T ss_pred ---------EEe-------CCHHHHHHHH-----hcCCCEEEEechhcCC-------------HHHHHHHHHHH-HCCCE
Confidence 111 0112222221 2468999999443331 14667777888 68999
Q ss_pred EEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005200 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 624 Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
|++..=...-.+ .-+.|+..+...||.|.-|..--
T Consensus 131 Vi~~GLd~DF~~--------~~F~~~~~Ll~~Ad~v~kl~aiC 165 (219)
T 3e2i_A 131 VIVAGLDMDFRG--------EPFEPMPKLMAVSEQVTKLQAVC 165 (219)
T ss_dssp EEEEEESBCTTS--------CBCTTHHHHHHHCSEEEEECEEC
T ss_pred EEEeeccccccc--------CCCccHHHHHHhcceEEEeeeEc
Confidence 988665222221 12678889999999998886543
No 52
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.24 E-value=0.0078 Score=62.64 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=38.6
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
..+|++++|.|++|+||||++..+|..++.. |.+|+++..+..
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D~~ 143 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAADTF 143 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECTT
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEccccc
Confidence 4578999999999999999999999998876 999999998864
No 53
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.22 E-value=0.00036 Score=71.38 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=42.7
Q ss_pred CCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceE
Q 005200 580 GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNG 659 (709)
Q Consensus 580 ~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~v 659 (709)
+++++++| .+.++.+ .....++++.|++++++.+++||+++|.-. .+.+.||.+
T Consensus 165 ~p~lLllD-------EPts~LD-~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~------------------~~~~~~d~v 218 (266)
T 4g1u_C 165 TPRWLFLD-------EPTSALD-LYHQQHTLRLLRQLTRQEPLAVCCVLHDLN------------------LAALYADRI 218 (266)
T ss_dssp CCEEEEEC-------CCCSSCC-HHHHHHHHHHHHHHHHHSSEEEEEECSCHH------------------HHHHHCSEE
T ss_pred CCCEEEEe-------CccccCC-HHHHHHHHHHHHHHHHcCCCEEEEEEcCHH------------------HHHHhCCEE
Confidence 89999999 2223333 344567888899999888899999999411 145678888
Q ss_pred EEEee
Q 005200 660 IVIHR 664 (709)
Q Consensus 660 l~l~r 664 (709)
++|..
T Consensus 219 ~vl~~ 223 (266)
T 4g1u_C 219 MLLAQ 223 (266)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 88864
No 54
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.22 E-value=0.0069 Score=66.04 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=44.7
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHH--HHHHHHcCCCccc
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHAR--KLLEKHIKKPFFE 526 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~--Rl~~~~~g~~~~~ 526 (709)
++.+++++|++|+||||++..+|..++.+ |.+|++++.+.-...... +.++...+++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~ 157 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR-GYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYG 157 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCSCHHHHHHHHHHHHTTTCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecCccchhHHHHHHHHHHhcCCceee
Confidence 46799999999999999999999999876 999999998854221122 2334455665543
No 55
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.19 E-value=0.00068 Score=72.25 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=43.1
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..++++++.|- +.++.+ .....++++.|+++.++.|++||+++|.-. .+.+.||
T Consensus 179 ~~~P~lLLlDE-------PTs~LD-~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~------------------~~~~~aD 232 (366)
T 3tui_C 179 ASNPKVLLCDQ-------ATSALD-PATTRSILELLKDINRRLGLTILLITHEMD------------------VVKRICD 232 (366)
T ss_dssp TTCCSEEEEES-------TTTTSC-HHHHHHHHHHHHHHHHHSCCEEEEEESCHH------------------HHHHHCS
T ss_pred hcCCCEEEEEC-------CCccCC-HHHHHHHHHHHHHHHHhCCCEEEEEecCHH------------------HHHHhCC
Confidence 46799999992 223333 344567888899999999999999999411 1345677
Q ss_pred eEEEEee
Q 005200 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.+++|..
T Consensus 233 rv~vl~~ 239 (366)
T 3tui_C 233 CVAVISN 239 (366)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 7777764
No 56
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.17 E-value=0.00081 Score=68.40 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=41.3
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++| .+.++.+ ......+++.|++++++ |.+||+++|.-.. +...||
T Consensus 169 ~~~p~lllLD-------EPts~LD-~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~------------------~~~~~d 221 (257)
T 1g6h_A 169 MTNPKMIVMD-------EPIAGVA-PGLAHDIFNHVLELKAK-GITFLIIEHRLDI------------------VLNYID 221 (257)
T ss_dssp HTCCSEEEEE-------STTTTCC-HHHHHHHHHHHHHHHHT-TCEEEEECSCCST------------------TGGGCS
T ss_pred HcCCCEEEEe-------CCccCCC-HHHHHHHHHHHHHHHHC-CCEEEEEecCHHH------------------HHHhCC
Confidence 3679999999 2223333 34456778888888766 9999999994222 346789
Q ss_pred eEEEEe
Q 005200 658 NGIVIH 663 (709)
Q Consensus 658 ~vl~l~ 663 (709)
.+++|.
T Consensus 222 ~v~~l~ 227 (257)
T 1g6h_A 222 HLYVMF 227 (257)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 988885
No 57
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.14 E-value=0.0082 Score=63.15 Aligned_cols=143 Identities=14% Similarity=0.129 Sum_probs=80.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC---HHHHHHHHHHHHcCCCccccccCCCCCCCCHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK---VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~---~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~ 540 (709)
-.+|+++.|.|++|+||||++..++...... +..|++...+.. +.+.. +.++...|+++..... .+.+..
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l~g~D~~r~~a~eql-~~~~~~~gv~~v~q~~-----~~~p~~ 198 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVIAASDTFRAGAIEQL-EEHAKRIGVKVIKHSY-----GADPAA 198 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSSTTHHHHH-HHHHHHTTCEEECCCT-----TCCHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEeecccccchHHHH-HHHHHHcCceEEeccc-----cCCHHH
Confidence 4689999999999999999999999877665 889999987743 22222 2234455654432211 233322
Q ss_pred -HHHHHH-HHh-c-CcceEEecCCCCC-CHHHHHHHHHHHHHh--cCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHH
Q 005200 541 -FEQGKA-WLS-N-TFSLIRCENDSLP-SIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 613 (709)
Q Consensus 541 -~~~~~~-~l~-~-~~~~i~~~~~~~~-~i~~i~~~i~~~~~~--~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~L 613 (709)
..+... ... . ...+++. .+.. .-..+...+..+.+. ....++++|.... .+++..+
T Consensus 199 ~v~e~l~~~~~~~~d~vliDt--aG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---------------~~~~~~~ 261 (328)
T 3e70_C 199 VAYDAIQHAKARGIDVVLIDT--AGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---------------NAIVEQA 261 (328)
T ss_dssp HHHHHHHHHHHHTCSEEEEEE--CCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---------------THHHHHH
T ss_pred HHHHHHHHHHhccchhhHHhh--ccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---------------HHHHHHH
Confidence 111111 111 1 2233432 2221 112233333333222 3345778883211 1455667
Q ss_pred HHHHHHhCcEEEEEecc
Q 005200 614 KRFAQHHACHVWFVAHP 630 (709)
Q Consensus 614 k~lA~~~~i~Vi~v~h~ 630 (709)
+.+.++.++++++++|.
T Consensus 262 ~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 262 RQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHHHHSCCCEEEEECG
T ss_pred HHHHHhcCCCEEEEeCc
Confidence 77888899999999993
No 58
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.13 E-value=0.0027 Score=68.07 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005200 568 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 568 i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
-+..++.++ .+++++++| .+.++.+ .....++...|+++.++.|++||+++|.
T Consensus 141 RVaiArAL~--~~P~lLLLD-------EPts~LD-~~~~~~l~~~l~~l~~~~g~tii~vTHd 193 (381)
T 3rlf_A 141 RVAIGRTLV--AEPSVFLLD-------EPLSNLD-AALRVQMRIEISRLHKRLGRTMIYVTHD 193 (381)
T ss_dssp HHHHHHHHH--HCCSEEEEE-------STTTTSC-HHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred HHHHHHHHH--cCCCEEEEE-------CCCcCCC-HHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 334444443 578999999 2222333 3344678888999999999999999994
No 59
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.11 E-value=0.0013 Score=69.90 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=32.6
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++| .+.++.+ .....++...|+++.++.+++||+++|.
T Consensus 154 ~~~P~lLLLD-------EPts~LD-~~~r~~l~~~l~~~~~~~g~tvi~vTHd 198 (359)
T 3fvq_A 154 APDPELILLD-------EPFSALD-EQLRRQIREDMIAALRANGKSAVFVSHD 198 (359)
T ss_dssp TTCCSEEEEE-------STTTTSC-HHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HcCCCEEEEe-------CCcccCC-HHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4679999999 2222333 3334567777888888999999999994
No 60
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.05 E-value=0.0057 Score=64.18 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=39.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
..+|++++|.|++|+||||++..+|..++.. |.+|+++..+..
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid~D~~ 144 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAAADTF 144 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCc
Confidence 5678999999999999999999999999876 999999998864
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.03 E-value=0.0046 Score=66.10 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=36.6
Q ss_pred CCCc--EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC--CCHHHHHHHHH
Q 005200 465 LPGE--LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME--NKVREHARKLL 516 (709)
Q Consensus 465 ~~G~--L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE--~~~~~~~~Rl~ 516 (709)
..+. .++|.|+||+|||+++..++..+....+.+++|++.. .+...+...++
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence 3446 8999999999999999988776543215788998843 23445555543
No 62
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.02 E-value=0.002 Score=68.95 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=33.5
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++|- +.++.+ .....++...|+++.++.+++||+++|.
T Consensus 157 ~~~P~lLLLDE-------P~s~LD-~~~r~~l~~~l~~l~~~~g~tvi~vTHd 201 (372)
T 1v43_A 157 VVEPDVLLMDE-------PLSNLD-AKLRVAMRAEIKKLQQKLKVTTIYVTHD 201 (372)
T ss_dssp TTCCSEEEEES-------TTTTSC-HHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred hcCCCEEEEcC-------CCccCC-HHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 36799999992 222333 3445678888899999999999999994
No 63
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.01 E-value=0.0038 Score=66.36 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=33.6
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
-.+++++++|- +.++.+ .....++...|+++.++.+++||+++|.
T Consensus 161 ~~~P~lLLLDE-------P~s~LD-~~~r~~l~~~l~~l~~~~g~tvi~vTHd 205 (355)
T 1z47_A 161 APRPQVLLFDE-------PFAAID-TQIRRELRTFVRQVHDEMGVTSVFVTHD 205 (355)
T ss_dssp TTCCSEEEEES-------TTCCSS-HHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred HcCCCEEEEeC-------CcccCC-HHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 46799999992 222333 3445678888899999999999999994
No 64
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.01 E-value=0.0032 Score=63.84 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=26.2
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++
T Consensus 30 vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3555444 9999999999999999999987554
No 65
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.98 E-value=0.00097 Score=68.64 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=26.1
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
.|+++-- +.+|+++.|.|++|+|||||+.-++
T Consensus 36 vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3555544 9999999999999999999977554
No 66
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.97 E-value=0.0041 Score=63.38 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=42.0
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++| .+..+.+ ......+.+.|++++++ +.+||+++|.-. .+...||
T Consensus 175 ~~~p~lllLD-------EPts~LD-~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~------------------~~~~~~d 227 (263)
T 2olj_A 175 AMEPKIMLFD-------EPTSALD-PEMVGEVLSVMKQLANE-GMTMVVVTHEMG------------------FAREVGD 227 (263)
T ss_dssp TTCCSEEEEE-------STTTTSC-HHHHHHHHHHHHHHHHT-TCEEEEECSCHH------------------HHHHHCS
T ss_pred HCCCCEEEEe-------CCcccCC-HHHHHHHHHHHHHHHhC-CCEEEEEcCCHH------------------HHHHhCC
Confidence 4679999999 2223333 34456778888888776 999999999421 2456789
Q ss_pred eEEEEee
Q 005200 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.+++|..
T Consensus 228 ~v~~l~~ 234 (263)
T 2olj_A 228 RVLFMDG 234 (263)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9988863
No 67
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.96 E-value=0.0021 Score=68.81 Aligned_cols=55 Identities=15% Similarity=0.083 Sum_probs=40.4
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhc-------CCeEEEEECCC---CHHHHHHHHHHHHcC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHA-------GWKFVLCSMEN---KVREHARKLLEKHIK 521 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~-------g~~Vly~SlE~---~~~~~~~Rl~~~~~g 521 (709)
+..++|.|+||+|||+++..++..+.... +.+++|++... ++..+...++..+.+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~ 109 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTG 109 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcC
Confidence 45899999999999999999888775532 78899888542 555566565554433
No 68
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.96 E-value=0.0014 Score=67.02 Aligned_cols=60 Identities=22% Similarity=0.328 Sum_probs=41.0
Q ss_pred HhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhccc
Q 005200 577 LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKC 656 (709)
Q Consensus 577 ~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~A 656 (709)
--.+++++++|- +..+.+ ......+++.|++++++ +.+||+++|.-.. +...|
T Consensus 153 L~~~p~lllLDE-------Pts~LD-~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~------------------~~~~~ 205 (266)
T 2yz2_A 153 IVHEPDILILDE-------PLVGLD-REGKTDLLRIVEKWKTL-GKTVILISHDIET------------------VINHV 205 (266)
T ss_dssp HTTCCSEEEEES-------TTTTCC-HHHHHHHHHHHHHHHHT-TCEEEEECSCCTT------------------TGGGC
T ss_pred HHcCCCEEEEcC-------ccccCC-HHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH------------------HHHhC
Confidence 346899999992 222333 34456778888888776 9999999994222 23567
Q ss_pred ceEEEEe
Q 005200 657 DNGIVIH 663 (709)
Q Consensus 657 D~vl~l~ 663 (709)
|.++.|.
T Consensus 206 d~v~~l~ 212 (266)
T 2yz2_A 206 DRVVVLE 212 (266)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 8887775
No 69
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.96 E-value=0.012 Score=61.33 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=35.2
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
+|+++.|.|++|+||||++..++...... +..|++...+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeecC
Confidence 68999999999999999999999877665 88999988774
No 70
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.94 E-value=0.0032 Score=63.76 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=75.2
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcC-----CeEEEEECC------CCHHHHHHHHHHHHcCCCcc
Q 005200 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-----WKFVLCSME------NKVREHARKLLEKHIKKPFF 525 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g-----~~Vly~SlE------~~~~~~~~Rl~~~~~g~~~~ 525 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++--.--..| ..+.|+.-+ ++..+.. . . +...
T Consensus 21 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl---~-~--~~~~- 93 (253)
T 2nq2_C 21 FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIV---L-M--GRST- 93 (253)
T ss_dssp EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHH---H-G--GGGG-
T ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHH---H-H--hhhh-
Confidence 555434 999999999999999999997765432211112 235565432 2222221 1 1 0000
Q ss_pred ccccCCCCCCCCHHH---HHHHHHHHhcCcceEEecCCCCCCHHH--HHHHHHHHHHhcCCcEEEEccCcccccCCCCCC
Q 005200 526 EANYGGSAERMTVEE---FEQGKAWLSNTFSLIRCENDSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600 (709)
Q Consensus 526 ~i~~g~~~~~l~~e~---~~~~~~~l~~~~~~i~~~~~~~~~i~~--i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~ 600 (709)
..+. ......+. ..++.+.+.-.- +.. ......+-.+ -+..++. -..+++++++|- +..+.
T Consensus 94 --~~~~-~~~~~~~~~~~~~~~l~~~~l~~-~~~-~~~~~LSgGq~qrv~lAra--L~~~p~lllLDE-------Pts~L 159 (253)
T 2nq2_C 94 --HINT-FAKPKSHDYQVAMQALDYLNLTH-LAK-REFTSLSGGQRQLILIARA--IASECKLILLDE-------PTSAL 159 (253)
T ss_dssp --GSCT-TCCCCHHHHHHHHHHHHHTTCGG-GTT-SBGGGSCHHHHHHHHHHHH--HHTTCSEEEESS-------SSTTS
T ss_pred --hccc-ccCCCHHHHHHHHHHHHHcCChH-Hhc-CChhhCCHHHHHHHHHHHH--HHcCCCEEEEeC-------CcccC
Confidence 0000 00012222 222333221100 000 0011233333 2233333 346799999992 22233
Q ss_pred CHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005200 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 601 ~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
+ ......+++.|++++++.+.+||+++|.
T Consensus 160 D-~~~~~~l~~~l~~l~~~~g~tvi~vtHd 188 (253)
T 2nq2_C 160 D-LANQDIVLSLLIDLAQSQNMTVVFTTHQ 188 (253)
T ss_dssp C-HHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred C-HHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 3 3445677888888887779999999994
No 71
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.93 E-value=0.0075 Score=64.20 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=38.2
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhc-----CCeEEEEECCC--CHHHHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHA-----GWKFVLCSMEN--KVREHARKLLE 517 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~-----g~~Vly~SlE~--~~~~~~~Rl~~ 517 (709)
..+..++|.|+||+|||+++..++..+.... +.+++|++... +...+...++.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 101 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAE 101 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHH
Confidence 3456899999999999999999988775532 67788887643 34444444443
No 72
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.93 E-value=0.0057 Score=63.60 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=37.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
+.+|+++.|.|++|+||||++..++...... +..|++...+..
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~g~d~~ 139 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTF 139 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCS
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeeccc
Confidence 6789999999999999999999999887765 889998887653
No 73
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.93 E-value=0.003 Score=64.37 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=41.6
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++| .+.++.+ ......+++.|++++++ +.+||+++|.-. .+...||
T Consensus 169 ~~~p~lllLD-------EPts~LD-~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~------------------~~~~~~d 221 (262)
T 1b0u_A 169 AMEPDVLLFD-------EPTSALD-PELVGEVLRIMQQLAEE-GKTMVVVTHEMG------------------FARHVSS 221 (262)
T ss_dssp HTCCSEEEEE-------STTTTSC-HHHHHHHHHHHHHHHHT-TCCEEEECSCHH------------------HHHHHCS
T ss_pred hcCCCEEEEe-------CCCccCC-HHHHHHHHHHHHHHHhC-CCEEEEEeCCHH------------------HHHHhCC
Confidence 4679999999 2223333 34456777888888776 999999999421 1456789
Q ss_pred eEEEEee
Q 005200 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.+++|..
T Consensus 222 ~v~~l~~ 228 (262)
T 1b0u_A 222 HVIFLHQ 228 (262)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9888863
No 74
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.88 E-value=0.015 Score=64.18 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=36.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
+.+|+++.|.|++|+||||++..|+..+... +..|++...+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~g~D~ 331 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAAGDT 331 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEECCCT
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEecCcc
Confidence 6789999999999999999999998877655 88998887664
No 75
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.87 E-value=0.0086 Score=63.70 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=37.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
+.+|+++.|.|++|+||||++..++..+... +..|++...+..
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~g~D~~ 196 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTF 196 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCS
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEeccccc
Confidence 6789999999999999999999999887665 889999887753
No 76
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.86 E-value=0.0066 Score=63.68 Aligned_cols=134 Identities=13% Similarity=0.112 Sum_probs=71.8
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC--------CHHHHHHHHHHHHcCCCccccccCCCCCC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN--------KVREHARKLLEKHIKKPFFEANYGGSAER 535 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~--------~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~ 535 (709)
+..|.+++|.|++|+|||+++.+++... + ++|+++.. +...+...+...+..
T Consensus 28 l~~~~~v~i~G~~G~GKT~Ll~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-------------- 87 (350)
T 2qen_A 28 LENYPLTLLLGIRRVGKSSLLRAFLNER----P--GILIDCRELYAERGHITREELIKELQSTISP-------------- 87 (350)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHS----S--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCS--------------
T ss_pred HhcCCeEEEECCCcCCHHHHHHHHHHHc----C--cEEEEeecccccccCCCHHHHHHHHHHHHHH--------------
Confidence 4446799999999999999999887542 3 88888753 334444443322111
Q ss_pred CCHHHHHHHHHHHhcCcceEEe-c-CCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHH
Q 005200 536 MTVEEFEQGKAWLSNTFSLIRC-E-NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 613 (709)
Q Consensus 536 l~~e~~~~~~~~l~~~~~~i~~-~-~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~L 613 (709)
. +.+ .+.+.-.. .+.. . .....+++++...+.......+.-+||||.+..+..... ... .++...|
T Consensus 88 ~--~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-~~~-----~~~~~~L 155 (350)
T 2qen_A 88 F--QKF---QSKFKISL-NLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-RGG-----KELLALF 155 (350)
T ss_dssp H--HHH---HHHHTCCC-CCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-TTT-----HHHHHHH
T ss_pred H--HhH---hhhceeEE-EecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-cch-----hhHHHHH
Confidence 0 001 11111000 0000 0 001234566666666555544578999998877653100 001 2344555
Q ss_pred HHHHHH-hCcEEEEEec
Q 005200 614 KRFAQH-HACHVWFVAH 629 (709)
Q Consensus 614 k~lA~~-~~i~Vi~v~h 629 (709)
+.+... .++.+|++..
T Consensus 156 ~~~~~~~~~~~~il~g~ 172 (350)
T 2qen_A 156 AYAYDSLPNLKIILTGS 172 (350)
T ss_dssp HHHHHHCTTEEEEEEES
T ss_pred HHHHHhcCCeEEEEECC
Confidence 555554 4788888765
No 77
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.86 E-value=0.026 Score=61.41 Aligned_cols=141 Identities=16% Similarity=0.174 Sum_probs=78.8
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHH--HHHHHHHcCCCccccccCCCCCCCCHHHH-H
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA--RKLLEKHIKKPFFEANYGGSAERMTVEEF-E 542 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~--~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~-~ 542 (709)
++.++++.|++|+||||++..++..++.. |.+|+++..+....... .+.+....++++..... ..++.++ .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~-----~~~p~~i~~ 170 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMD-----GESPESIRR 170 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCT-----TCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeeccccCchhHHHHHHhcccCCccEEecCC-----CCCHHHHHH
Confidence 67899999999999999999999999876 99999999985422111 12234445665432211 1344444 4
Q ss_pred HHHHHHh-cC--cceEEecCCCCCCHH-HHHHHHHHHHHhcCC--cEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHH
Q 005200 543 QGKAWLS-NT--FSLIRCENDSLPSIK-WVLDLAKAAVLRHGV--RGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRF 616 (709)
Q Consensus 543 ~~~~~l~-~~--~~~i~~~~~~~~~i~-~i~~~i~~~~~~~~~--~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~l 616 (709)
++...+. .. ..+++ ..+....+ .+...+..+.....+ -++|+|... +. ..+..++.+
T Consensus 171 ~~l~~~~~~~~DvVIID--TaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~t--------gq-------~av~~a~~f 233 (425)
T 2ffh_A 171 RVEEKARLEARDLILVD--TAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT--------GQ-------EALSVARAF 233 (425)
T ss_dssp HHHHHHHHTTCSEEEEE--CCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG--------TT-------HHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEc--CCCcccccHHHHHHHHHhhhccCCceEEEEEeccc--------hH-------HHHHHHHHH
Confidence 4445442 33 34443 23333222 233333333222233 366777311 11 122333455
Q ss_pred HHHhCcEEEEEec
Q 005200 617 AQHHACHVWFVAH 629 (709)
Q Consensus 617 A~~~~i~Vi~v~h 629 (709)
....++..+++++
T Consensus 234 ~~~l~i~GVIlTK 246 (425)
T 2ffh_A 234 DEKVGVTGLVLTK 246 (425)
T ss_dssp HHHTCCCEEEEES
T ss_pred HhcCCceEEEEeC
Confidence 5667777778777
No 78
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.85 E-value=0.0065 Score=65.04 Aligned_cols=45 Identities=11% Similarity=0.177 Sum_probs=33.4
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++|- +.++.+ .....++...|+++.++.+++||+++|.
T Consensus 155 ~~~P~lLLLDE-------P~s~LD-~~~r~~l~~~l~~l~~~~g~tvi~vTHd 199 (372)
T 1g29_1 155 VRKPQVFLMDE-------PLSNLD-AKLRVRMRAELKKLQRQLGVTTIYVTHD 199 (372)
T ss_dssp HTCCSEEEEEC-------TTTTSC-HHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred hcCCCEEEECC-------CCccCC-HHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 36799999992 222333 3444678888889988999999999994
No 79
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.83 E-value=0.0093 Score=61.80 Aligned_cols=42 Identities=12% Similarity=0.168 Sum_probs=37.6
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
.+|++++|.|++|+||||++..++..++...|.+|+++..+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 468899999999999999999999998864499999999875
No 80
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.82 E-value=0.0029 Score=62.79 Aligned_cols=58 Identities=9% Similarity=0.115 Sum_probs=40.2
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++|- +..+.+ ......+.+.|++++++ +.+||+++|.-. .+ ..||
T Consensus 156 ~~~p~lllLDE-------Pt~~LD-~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~------------------~~-~~~d 207 (224)
T 2pcj_A 156 ANEPILLFADE-------PTGNLD-SANTKRVMDIFLKINEG-GTSIVMVTHERE------------------LA-ELTH 207 (224)
T ss_dssp TTCCSEEEEES-------TTTTCC-HHHHHHHHHHHHHHHHT-TCEEEEECSCHH------------------HH-TTSS
T ss_pred HcCCCEEEEeC-------CCCCCC-HHHHHHHHHHHHHHHHC-CCEEEEEcCCHH------------------HH-HhCC
Confidence 46799999992 222333 34456778888888777 999999999411 12 4688
Q ss_pred eEEEEe
Q 005200 658 NGIVIH 663 (709)
Q Consensus 658 ~vl~l~ 663 (709)
.++.|.
T Consensus 208 ~v~~l~ 213 (224)
T 2pcj_A 208 RTLEMK 213 (224)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 888885
No 81
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.82 E-value=0.004 Score=58.85 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=29.9
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHh------cCCeEEEEEC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEH------AGWKFVLCSM 504 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~------~g~~Vly~Sl 504 (709)
+..++|.|+||+|||+++..++..+... .+.+++++++
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 4578999999999999999998887652 1567776654
No 82
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.81 E-value=0.0019 Score=68.80 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=33.5
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
-.+++++++|- +.++.+ .....++...|+++.++.+.+||+++|.
T Consensus 149 ~~~P~lLLLDE-------P~s~LD-~~~r~~l~~~l~~l~~~~g~tvi~vTHd 193 (359)
T 2yyz_A 149 VKQPKVLLFDE-------PLSNLD-ANLRMIMRAEIKHLQQELGITSVYVTHD 193 (359)
T ss_dssp TTCCSEEEEES-------TTTTSC-HHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred HcCCCEEEEEC-------CcccCC-HHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 46799999992 222333 3444678888889988999999999994
No 83
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.81 E-value=0.0032 Score=59.56 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=22.2
Q ss_pred cCCCcEEEEEccCCCChHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDAL 487 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~ql 487 (709)
+++|+++.|.|++|+|||||+..+
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHH
Confidence 788999999999999999999873
No 84
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.81 E-value=0.0043 Score=66.06 Aligned_cols=39 Identities=13% Similarity=0.300 Sum_probs=32.2
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhc--CCeEEEEEC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHA--GWKFVLCSM 504 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~--g~~Vly~Sl 504 (709)
.+..++|.|+||+|||+++..++..+.... +.+++|++.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 467999999999999999999888765543 578888875
No 85
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.79 E-value=0.018 Score=59.61 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=37.7
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
+|+++.+.|++|+||||++..++..++.. |.+|+++..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~ 137 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQ 137 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcc
Confidence 78899999999999999999999998876 999999998865
No 86
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.78 E-value=0.0014 Score=62.97 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=80.4
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHH
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK 545 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~ 545 (709)
+|.+.+++|++|+||||++++++.++..+ |.+|+++..+... |. +. ..+.. .+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~-g~~v~~~~~~~d~-----r~-----~~--~~i~s-----~~--------- 54 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLG-KKKVAVFKPKIDS-----RY-----HS--TMIVS-----HS--------- 54 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT-TCEEEEEEEC---------------CC--CEECC----------------
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeecccc-----cc-----Cc--ccEEe-----cC---------
Confidence 47899999999999999999999998876 9999999877532 21 11 11110 00
Q ss_pred HHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEE
Q 005200 546 AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 625 (709)
Q Consensus 546 ~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi 625 (709)
.+......+ .+.+++.+.+. .+.++|+||....+. .+++..|+.++.+ +++|+
T Consensus 55 -g~~~~~~~~-------~~~~~~~~~~~-----~~~dvviIDE~Q~~~-------------~~~~~~l~~l~~~-~~~Vi 107 (184)
T 2orw_A 55 -GNGVEAHVI-------ERPEEMRKYIE-----EDTRGVFIDEVQFFN-------------PSLFEVVKDLLDR-GIDVF 107 (184)
T ss_dssp ---CEECEEE-------SSGGGGGGGCC-----TTEEEEEECCGGGSC-------------TTHHHHHHHHHHT-TCEEE
T ss_pred -CCceeeEEE-------CCHHHHHHHhc-----CCCCEEEEECcccCC-------------HHHHHHHHHHHHC-CCCEE
Confidence 000000111 11233322221 357899999655431 1244566667766 99999
Q ss_pred EEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeC
Q 005200 626 FVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665 (709)
Q Consensus 626 ~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~ 665 (709)
+......-.+ + -+.++..+...||.+.-+...
T Consensus 108 ~~Gl~~~f~~----~----~f~~~~~ll~~ad~v~~l~~i 139 (184)
T 2orw_A 108 CAGLDLTHKQ----N----PFETTALLLSLADTVIKKKAV 139 (184)
T ss_dssp EEEESBCTTS----C----BCHHHHHHHHHCSEEEECCBC
T ss_pred EEeecccccc----C----CccchHHHHHHhhheEEeeee
Confidence 9888322111 1 145666777789988665443
No 87
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0099 Score=63.92 Aligned_cols=114 Identities=13% Similarity=0.157 Sum_probs=66.3
Q ss_pred hccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHH
Q 005200 462 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 541 (709)
Q Consensus 462 l~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~ 541 (709)
+|+.+-.=+++.||||+|||.+|..+|... |.+++.++... +... .+.+
T Consensus 177 ~gi~~prGvLL~GPPGTGKTllAkAiA~e~----~~~f~~v~~s~--------------------l~sk----~vGe--- 225 (405)
T 4b4t_J 177 LGIAQPKGVILYGPPGTGKTLLARAVAHHT----DCKFIRVSGAE--------------------LVQK----YIGE--- 225 (405)
T ss_dssp HTCCCCCCEEEESCSSSSHHHHHHHHHHHH----TCEEEEEEGGG--------------------GSCS----STTH---
T ss_pred CCCCCCCceEEeCCCCCCHHHHHHHHHHhh----CCCceEEEhHH--------------------hhcc----ccch---
Confidence 454333348999999999999988776653 78888776431 0000 0000
Q ss_pred HHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCC----CH-HHHHHHHHHHHHHH
Q 005200 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ----TE-TEYVSQMLTMVKRF 616 (709)
Q Consensus 542 ~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~----~~-~~~~~~i~~~Lk~l 616 (709)
.+..+..+-..++...+-+|+||.+-.+........ .+ ...+.+++..|..+
T Consensus 226 -----------------------se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 226 -----------------------GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp -----------------------HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred -----------------------HHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 111222233334567789999997776654332111 11 23456677777766
Q ss_pred HHHhCcEEEEEec
Q 005200 617 AQHHACHVWFVAH 629 (709)
Q Consensus 617 A~~~~i~Vi~v~h 629 (709)
....++.||+.+.
T Consensus 283 ~~~~~V~vIaATN 295 (405)
T 4b4t_J 283 ETSKNIKIIMATN 295 (405)
T ss_dssp TCCCCEEEEEEES
T ss_pred CCCCCeEEEeccC
Confidence 6666776666665
No 88
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.75 E-value=0.0084 Score=63.85 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=33.2
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
-.+++++++|-=+ ++.+ .....++...|+++.++.+++||+++|.
T Consensus 149 ~~~P~lLLLDEP~-------s~LD-~~~r~~l~~~l~~l~~~~g~tvi~vTHd 193 (362)
T 2it1_A 149 VKEPEVLLLDEPL-------SNLD-ALLRLEVRAELKRLQKELGITTVYVTHD 193 (362)
T ss_dssp TTCCSEEEEESGG-------GGSC-HHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred HcCCCEEEEECcc-------ccCC-HHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 4679999999322 2222 3344678888889988999999999994
No 89
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.75 E-value=0.00078 Score=71.52 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=33.4
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
-.+++++++|- +.++.+ .....++...|+++.++.+++||+++|.
T Consensus 143 ~~~P~lLLLDE-------P~s~LD-~~~~~~l~~~l~~l~~~~g~tii~vTHd 187 (348)
T 3d31_A 143 VTNPKILLLDE-------PLSALD-PRTQENAREMLSVLHKKNKLTVLHITHD 187 (348)
T ss_dssp TSCCSEEEEES-------SSTTSC-HHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred HcCCCEEEEEC-------ccccCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 36799999992 222333 3444678888889988999999999994
No 90
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.73 E-value=0.002 Score=64.77 Aligned_cols=60 Identities=15% Similarity=0.277 Sum_probs=41.3
Q ss_pred HhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhccc
Q 005200 577 LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKC 656 (709)
Q Consensus 577 ~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~A 656 (709)
-..+++++++| .+..+.+ ......+++.|+++++ .+.+||+++|.-. .+...|
T Consensus 154 L~~~p~lllLD-------EPts~LD-~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~------------------~~~~~~ 206 (240)
T 1ji0_A 154 LMSRPKLLMMD-------EPSLGLA-PILVSEVFEVIQKINQ-EGTTILLVEQNAL------------------GALKVA 206 (240)
T ss_dssp HTTCCSEEEEE-------CTTTTCC-HHHHHHHHHHHHHHHH-TTCCEEEEESCHH------------------HHHHHC
T ss_pred HHcCCCEEEEc-------CCcccCC-HHHHHHHHHHHHHHHH-CCCEEEEEecCHH------------------HHHHhC
Confidence 34689999999 2222333 3445667777888876 5899999999421 145678
Q ss_pred ceEEEEe
Q 005200 657 DNGIVIH 663 (709)
Q Consensus 657 D~vl~l~ 663 (709)
|.++.|.
T Consensus 207 d~v~~l~ 213 (240)
T 1ji0_A 207 HYGYVLE 213 (240)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9988885
No 91
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.72 E-value=0.042 Score=59.96 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=35.8
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
..+++++|.+|+||||++.+||..++.+.|.+|+.++++.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 3588888999999999999999999875599999999995
No 92
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.71 E-value=0.0022 Score=68.17 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=32.2
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++|-=+. +.+ .....++...|+++.++.+++||+++|.
T Consensus 156 ~~~P~lLLLDEP~s-------~LD-~~~r~~l~~~l~~l~~~~g~tvi~vTHd 200 (353)
T 1oxx_K 156 VKDPSLLLLDEPFS-------NLD-ARMRDSARALVKEVQSRLGVTLLVVSHD 200 (353)
T ss_dssp TTCCSEEEEESTTT-------TSC-GGGHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred HhCCCEEEEECCcc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46799999993222 222 2224567788888888899999999994
No 93
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.70 E-value=0.0038 Score=62.99 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=26.0
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005200 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 25 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 555433 99999999999999999999776543
No 94
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.0085 Score=65.19 Aligned_cols=115 Identities=15% Similarity=0.141 Sum_probs=68.5
Q ss_pred hhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHH
Q 005200 461 LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540 (709)
Q Consensus 461 ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~ 540 (709)
-+|+.+..=+++.||||+|||++|..+|..+ |.+++.++... +... .+.+
T Consensus 200 ~~g~~~prGiLL~GPPGtGKT~lakAiA~~~----~~~~~~v~~~~--------------------l~~~----~~Ge-- 249 (428)
T 4b4t_K 200 QIGIDPPRGVLLYGPPGTGKTMLVKAVANST----KAAFIRVNGSE--------------------FVHK----YLGE-- 249 (428)
T ss_dssp HHCCCCCCEEEEESCTTTTHHHHHHHHHHHH----TCEEEEEEGGG--------------------TCCS----SCSH--
T ss_pred hCCCCCCceEEEECCCCCCHHHHHHHHHHHh----CCCeEEEecch--------------------hhcc----ccch--
Confidence 3454444458999999999999988777654 78888776431 0000 0000
Q ss_pred HHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCC----CCCCH-HHHHHHHHHHHHH
Q 005200 541 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP----VSQTE-TEYVSQMLTMVKR 615 (709)
Q Consensus 541 ~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~----~~~~~-~~~~~~i~~~Lk~ 615 (709)
.+..+..+-..++...+-+|+||.+-.+..... ..... ...+.+++..|..
T Consensus 250 ------------------------~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg 305 (428)
T 4b4t_K 250 ------------------------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG 305 (428)
T ss_dssp ------------------------HHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHH
T ss_pred ------------------------hHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhC
Confidence 111112222234556788999997766654321 11222 3456778888887
Q ss_pred HHHHhCcEEEEEec
Q 005200 616 FAQHHACHVWFVAH 629 (709)
Q Consensus 616 lA~~~~i~Vi~v~h 629 (709)
+....++.||+++.
T Consensus 306 ~~~~~~v~vI~aTN 319 (428)
T 4b4t_K 306 FDQSTNVKVIMATN 319 (428)
T ss_dssp SCSSCSEEEEEEES
T ss_pred CCCCCCEEEEEecC
Confidence 77777877777665
No 95
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.017 Score=62.96 Aligned_cols=114 Identities=15% Similarity=0.216 Sum_probs=66.4
Q ss_pred hccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHH
Q 005200 462 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 541 (709)
Q Consensus 462 l~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~ 541 (709)
+|+.+-.=++|+||||+|||++|..+|... |.++++++... +... ...
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~----~~~~~~v~~s~--------------------l~sk----~~G---- 257 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATI----GANFIFSPASG--------------------IVDK----YIG---- 257 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHH----TCEEEEEEGGG--------------------TCCS----SSS----
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHh----CCCEEEEehhh--------------------hccc----cch----
Confidence 345555568999999999999988777653 78888776421 0000 000
Q ss_pred HHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCC----CCCH-HHHHHHHHHHHHHH
Q 005200 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV----SQTE-TEYVSQMLTMVKRF 616 (709)
Q Consensus 542 ~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~----~~~~-~~~~~~i~~~Lk~l 616 (709)
..+..+..+-..++...+-+|+||.+-.+...... ...+ ...+.+++..|..+
T Consensus 258 ----------------------ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 258 ----------------------ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp ----------------------HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred ----------------------HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 01222223333455678999999977666543211 1111 22345566666655
Q ss_pred HHHhCcEEEEEec
Q 005200 617 AQHHACHVWFVAH 629 (709)
Q Consensus 617 A~~~~i~Vi~v~h 629 (709)
...-++.||+++.
T Consensus 316 ~~~~~vivI~ATN 328 (437)
T 4b4t_L 316 DNLGQTKIIMATN 328 (437)
T ss_dssp SCTTSSEEEEEES
T ss_pred cCCCCeEEEEecC
Confidence 5556677776665
No 96
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.011 Score=67.36 Aligned_cols=158 Identities=16% Similarity=0.085 Sum_probs=83.8
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcC-----CeEEEEECC------CCHHHHHHHHHHHHcCCCccccccCCC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-----WKFVLCSME------NKVREHARKLLEKHIKKPFFEANYGGS 532 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g-----~~Vly~SlE------~~~~~~~~Rl~~~~~g~~~~~i~~g~~ 532 (709)
+..|+++.|.|++|+|||||+.-++--..-..| ..+.|+.-+ .+..+.+ .....+ .
T Consensus 375 ~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~---~~~~~~--------~-- 441 (608)
T 3j16_B 375 FSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLF---FKKIRG--------Q-- 441 (608)
T ss_dssp CCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHH---HHHCSS--------T--
T ss_pred cccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHH---HHHhhc--------c--
Confidence 666799999999999999998766542211123 245555433 2233322 111100 0
Q ss_pred CCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHH
Q 005200 533 AERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM 612 (709)
Q Consensus 533 ~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~ 612 (709)
....+...++.+.+.-.-.. .......+-.+-...+-..+-..+++++++| .+..+.+ .....++++.
T Consensus 442 --~~~~~~~~~~l~~l~l~~~~--~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD-------EPT~gLD-~~~~~~i~~l 509 (608)
T 3j16_B 442 --FLNPQFQTDVVKPLRIDDII--DQEVQHLSGGELQRVAIVLALGIPADIYLID-------EPSAYLD-SEQRIICSKV 509 (608)
T ss_dssp --TTSHHHHHHTHHHHTSTTTS--SSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC-------CTTTTCC-HHHHHHHHHH
T ss_pred --cccHHHHHHHHHHcCChhhh--cCChhhCCHHHHHHHHHHHHHHhCCCEEEEE-------CCCCCCC-HHHHHHHHHH
Confidence 11222233333333211000 0011233333322211111234679999999 2223333 3445678888
Q ss_pred HHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEee
Q 005200 613 VKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664 (709)
Q Consensus 613 Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r 664 (709)
|++++++.+.+||+++|.-. .+...||.++++..
T Consensus 510 l~~l~~~~g~tviivtHdl~------------------~~~~~aDrvivl~~ 543 (608)
T 3j16_B 510 IRRFILHNKKTAFIVEHDFI------------------MATYLADKVIVFEG 543 (608)
T ss_dssp HHHHHHHHTCEEEEECSCHH------------------HHHHHCSEEEECEE
T ss_pred HHHHHHhCCCEEEEEeCCHH------------------HHHHhCCEEEEEeC
Confidence 89998889999999999421 14466788877764
No 97
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.55 E-value=0.0028 Score=62.73 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=36.1
Q ss_pred CCcE-EEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 466 PGEL-TIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 466 ~G~L-~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
+|.+ +++.|+||+|||+++++++..++.+ |.+|+++.++.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~v~d~D~ 44 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVMAGVVET 44 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence 5666 7789999999999999999999987 99999999886
No 98
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.51 E-value=0.005 Score=69.26 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=44.3
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++| .+..+.+ .....++++.|++++++.+.+||+++|.-. .+.+.||
T Consensus 401 ~~~p~lLlLD-------EPT~gLD-~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~------------------~~~~~aD 454 (538)
T 3ozx_A 401 AKEADLYVLD-------QPSSYLD-VEERYIVAKAIKRVTRERKAVTFIIDHDLS------------------IHDYIAD 454 (538)
T ss_dssp HSCCSEEEEE-------STTTTCC-HHHHHHHHHHHHHHHHHTTCEEEEECSCHH------------------HHHHHCS
T ss_pred HcCCCEEEEe-------CCccCCC-HHHHHHHHHHHHHHHHhCCCEEEEEeCCHH------------------HHHHhCC
Confidence 4689999999 2223333 344567888899999999999999999421 1456788
Q ss_pred eEEEEee
Q 005200 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.+++|..
T Consensus 455 ri~vl~~ 461 (538)
T 3ozx_A 455 RIIVFKG 461 (538)
T ss_dssp EEEEEEE
T ss_pred EEEEEeC
Confidence 8888874
No 99
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.49 E-value=0.018 Score=62.04 Aligned_cols=53 Identities=13% Similarity=0.059 Sum_probs=39.2
Q ss_pred CCcEEEE--EccCCCChHHHHHHHHHHHHHhc-----CCeEEEEECC--CCHHHHHHHHHHH
Q 005200 466 PGELTIV--TGVPNSGKSEWIDALICNINEHA-----GWKFVLCSME--NKVREHARKLLEK 518 (709)
Q Consensus 466 ~G~L~ii--~G~pG~GKT~~a~qla~~~a~~~-----g~~Vly~SlE--~~~~~~~~Rl~~~ 518 (709)
.+..++| .|+||+|||+++..++..+.... +..++|++.. .+...+...++..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQ 110 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899 99999999999999988776531 5788999852 4455566555443
No 100
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.42 E-value=0.004 Score=64.82 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=26.0
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
.|+.+-- +.+|+++.|.|++|+||||++.-++
T Consensus 69 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHT
T ss_pred eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHH
Confidence 4555544 9999999999999999999976443
No 101
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.41 E-value=0.002 Score=61.58 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=30.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHH
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKL 515 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~-~~~~~~Rl 515 (709)
+++|.|++|+|||+||.+++.. |.+++|+.++.. ..+..+|+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~~d~e~~~rI 43 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-----APQVLYIATSQILDDEMAARI 43 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC------CHH
T ss_pred CEEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCCCCHHHHHHH
Confidence 4789999999999999998754 678999999875 33444444
No 102
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.40 E-value=0.053 Score=60.26 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=34.8
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
...++|+|.||+||||++..|+..++.. |.+|+.++.+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~-G~kVllVd~D~ 139 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRK-GWKTCLICADT 139 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEeccc
Confidence 4588899999999999999999999876 99999999874
No 103
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.39 E-value=0.013 Score=66.02 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=43.9
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++| .+..+.+ .....++++.|++++++.+.+||+++|.... +...||
T Consensus 417 ~~~p~lLlLD-------EPt~~LD-~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~------------------~~~~~d 470 (538)
T 1yqt_A 417 LRDADIYLLD-------EPSAYLD-VEQRLAVSRAIRHLMEKNEKTALVVEHDVLM------------------IDYVSD 470 (538)
T ss_dssp TSCCSEEEEE-------CTTTTCC-HHHHHHHHHHHHHHHHHHTCEEEEECSCHHH------------------HHHHCS
T ss_pred HhCCCEEEEe-------CCcccCC-HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH------------------HHHhCC
Confidence 4679999999 2223333 3445678888889988899999999994221 456778
Q ss_pred eEEEEee
Q 005200 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 471 rv~vl~~ 477 (538)
T 1yqt_A 471 RLMVFEG 477 (538)
T ss_dssp EEEEEEE
T ss_pred EEEEEeC
Confidence 8888863
No 104
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.028 Score=60.80 Aligned_cols=114 Identities=13% Similarity=0.130 Sum_probs=66.5
Q ss_pred hccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHH
Q 005200 462 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 541 (709)
Q Consensus 462 l~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~ 541 (709)
+|+++-.=+++.||||+|||.+|..+|... +.+++.++... +... .+.
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~----~~~fi~v~~s~--------------------l~sk----~vG---- 258 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQT----SATFLRIVGSE--------------------LIQK----YLG---- 258 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHH----TCEEEEEESGG--------------------GCCS----SSS----
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHh----CCCEEEEEHHH--------------------hhhc----cCc----
Confidence 344444569999999999999988776653 78887776421 0000 000
Q ss_pred HHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCC----CCCH-HHHHHHHHHHHHHH
Q 005200 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV----SQTE-TEYVSQMLTMVKRF 616 (709)
Q Consensus 542 ~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~----~~~~-~~~~~~i~~~Lk~l 616 (709)
..+..+..+-..+++..+-+|+||.+-.+...... +..+ ...+.+++..+..+
T Consensus 259 ----------------------esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~ 316 (437)
T 4b4t_I 259 ----------------------DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF 316 (437)
T ss_dssp ----------------------HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC
T ss_pred ----------------------hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc
Confidence 01222223333455677899999977666543211 1122 23455666666666
Q ss_pred HHHhCcEEEEEec
Q 005200 617 AQHHACHVWFVAH 629 (709)
Q Consensus 617 A~~~~i~Vi~v~h 629 (709)
....++.||+++.
T Consensus 317 ~~~~~ViVIaATN 329 (437)
T 4b4t_I 317 DDRGDVKVIMATN 329 (437)
T ss_dssp CCSSSEEEEEEES
T ss_pred CCCCCEEEEEeCC
Confidence 6666666666665
No 105
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.37 E-value=0.021 Score=65.08 Aligned_cols=158 Identities=16% Similarity=0.032 Sum_probs=83.9
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcC-----CeEEEEECC------CCHHHHHHHHHHHHcCCCccccccCCC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-----WKFVLCSME------NKVREHARKLLEKHIKKPFFEANYGGS 532 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g-----~~Vly~SlE------~~~~~~~~Rl~~~~~g~~~~~i~~g~~ 532 (709)
+.+|+++.|.|++|+|||||+.-++--..-..| ..+.|+.-+ ++..+.+....... ..
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~---- 447 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LN---- 447 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HH----
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccC-------CC----
Confidence 789999999999999999998866542211112 245565432 23333322110000 00
Q ss_pred CCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHH
Q 005200 533 AERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM 612 (709)
Q Consensus 533 ~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~ 612 (709)
..+...++.+.+.-.-..- ......+-.+-....-..+-..+++++++| .+..+.+ .....++++.
T Consensus 448 ----~~~~~~~~l~~~~l~~~~~--~~~~~LSGGe~QRv~iAraL~~~p~lLlLD-------EPt~~LD-~~~~~~l~~~ 513 (607)
T 3bk7_A 448 ----SNFYKTELLKPLGIIDLYD--RNVEDLSGGELQRVAIAATLLRDADIYLLD-------EPSAYLD-VEQRLAVSRA 513 (607)
T ss_dssp ----CHHHHHHTHHHHTCTTTTT--SBGGGCCHHHHHHHHHHHHHTSCCSEEEEE-------CTTTTCC-HHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCchHhc--CChhhCCHHHHHHHHHHHHHHhCCCEEEEe-------CCccCCC-HHHHHHHHHH
Confidence 0112222223221100000 001122333322222122234679999999 2223333 3445678888
Q ss_pred HHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEee
Q 005200 613 VKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664 (709)
Q Consensus 613 Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r 664 (709)
|++++++.+.+||+++|... .+...||.+++|..
T Consensus 514 l~~l~~~~g~tvi~vsHd~~------------------~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 514 IRHLMEKNEKTALVVEHDVL------------------MIDYVSDRLIVFEG 547 (607)
T ss_dssp HHHHHHHTTCEEEEECSCHH------------------HHHHHCSEEEEEEE
T ss_pred HHHHHHhCCCEEEEEeCCHH------------------HHHHhCCEEEEEcC
Confidence 88998889999999999421 14567788888863
No 106
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.33 E-value=0.0091 Score=57.68 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=34.0
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
.+++|.+++|.||||.|.-+++.++.+ |.+|+++.+--
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~-G~rV~~vQF~K 66 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH-GKNVGVVQFIK 66 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeC
Confidence 488888899999999999999999986 99999997653
No 107
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.32 E-value=0.031 Score=58.46 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=28.0
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
.+..-++|.|+||+|||++|..++... +.++++++.
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~----~~~~~~v~~ 84 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA----NSTFFSVSS 84 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH----TCEEEEEEH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH----CCCEEEEch
Confidence 344568999999999999998876642 778877754
No 108
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.30 E-value=0.011 Score=61.38 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=28.8
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
+.++.-++|.|+||+|||+++..++... +.++++++
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~----~~~~i~v~ 81 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISIK 81 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT----TCEEEEEC
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh----CCCEEEEE
Confidence 6788899999999999999998777643 56666554
No 109
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.30 E-value=0.0013 Score=66.06 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=43.3
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++|- +..+.+ ......+++.|++++++.+.+||+++|.-. .+...||
T Consensus 142 ~~~p~lllLDE-------Pts~LD-~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~------------------~~~~~~d 195 (240)
T 2onk_A 142 VIQPRLLLLDE-------PLSAVD-LKTKGVLMEELRFVQREFDVPILHVTHDLI------------------EAAMLAD 195 (240)
T ss_dssp TTCCSSBEEES-------TTSSCC-HHHHHHHHHHHHHHHHHHTCCEEEEESCHH------------------HHHHHCS
T ss_pred HcCCCEEEEeC-------CcccCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHHhCC
Confidence 46799999992 222333 344567888888888888999999999421 1456789
Q ss_pred eEEEEee
Q 005200 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 196 ~i~~l~~ 202 (240)
T 2onk_A 196 EVAVMLN 202 (240)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 8888863
No 110
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.29 E-value=0.012 Score=55.33 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=28.8
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHh------cCCeEEEEE
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEH------AGWKFVLCS 503 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~------~g~~Vly~S 503 (709)
+..++|.|+||+|||+++..++..+... .+.++++++
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 4577999999999999999998887652 156666664
No 111
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.23 E-value=0.019 Score=58.56 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=29.8
Q ss_pred ccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 463 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 463 ~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
++.++.-++|.|+||+|||+++..++.. .+.++.+++.
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~----~~~~~~~v~~ 84 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATE----TNATFIRVVG 84 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHH----TTCEEEEEEG
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHH----hCCCEEEEeh
Confidence 3566677999999999999999877654 2678877764
No 112
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.029 Score=61.19 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=30.4
Q ss_pred hhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 461 LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 461 ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
-+|+.+-.=++|.||||+|||++|..+|..+ |.+++.++.
T Consensus 237 ~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~----~~~fi~vs~ 276 (467)
T 4b4t_H 237 TLGIDPPKGILLYGPPGTGKTLCARAVANRT----DATFIRVIG 276 (467)
T ss_dssp HHTCCCCSEEEECSCTTSSHHHHHHHHHHHH----TCEEEEEEG
T ss_pred HCCCCCCCceEeeCCCCCcHHHHHHHHHhcc----CCCeEEEEh
Confidence 3455555578999999999999988776653 788877764
No 113
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.13 E-value=0.0046 Score=59.09 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=35.7
Q ss_pred hhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 458 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 458 LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
||.-....+|.+++|.|.+|+||||++..++..+... |.+|.+++.
T Consensus 4 ~~~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~-~~~~~~~~~ 49 (186)
T 2yvu_A 4 LTTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKE-GYRVEVLDG 49 (186)
T ss_dssp ----CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEeeH
Confidence 4443336678999999999999999999999988765 888888763
No 114
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.09 E-value=0.03 Score=55.06 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=26.0
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++
T Consensus 24 il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHT
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3555433 9999999999999999999977654
No 115
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.06 E-value=0.044 Score=57.31 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=29.8
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
..+..-++|.|+||+|||++|..++... . +.++++++..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~--~-~~~~~~i~~~ 80 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA--N-NSTFFSISSS 80 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT--T-SCEEEEEECC
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc--C-CCcEEEEEhH
Confidence 3455678999999999999999887754 2 6677777653
No 116
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.05 E-value=0.025 Score=62.02 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=33.0
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhc-CCeEEEEECCC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSMEN 506 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~-g~~Vly~SlE~ 506 (709)
+.-++|.|+||+|||+++..++..+.... +.+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 46799999999999999999888776543 78899987653
No 117
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.00 E-value=0.015 Score=65.22 Aligned_cols=148 Identities=14% Similarity=0.162 Sum_probs=82.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhc---CCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHA---GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~---g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~ 540 (709)
+..+--.+|+|.||+|||+++..++..++..+ ..+++.+.+.+ .++ +.+.+.+-. ... .--+.++
T Consensus 211 L~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg--~eL-----s~~~~lPHl--~~~---Vvtd~~~ 278 (574)
T 2iut_A 211 LAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM--LEL-----SIYEGIPHL--LCP---VVTDMKE 278 (574)
T ss_dssp GGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS--HHH-----HTTTTCTTB--SSS---CBCCHHH
T ss_pred hhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh--hhh-----HhhcCCCcc--cce---eeCCHHH
Confidence 55556789999999999999999999998652 34566666554 222 222232211 000 0112333
Q ss_pred HHHHHHHHh----cCcceEEecCCCCCCHHHHHHHHHHHHHh---------------------cC--CcEEEEccCcccc
Q 005200 541 FEQGKAWLS----NTFSLIRCENDSLPSIKWVLDLAKAAVLR---------------------HG--VRGLVIDPYNELD 593 (709)
Q Consensus 541 ~~~~~~~l~----~~~~~i~~~~~~~~~i~~i~~~i~~~~~~---------------------~~--~~lIVID~~~~l~ 593 (709)
..++..|+. .+.-++.. .+-.+++.....+...... .. .-+||||.+..++
T Consensus 279 a~~~L~~lv~EMerR~~ll~~--~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~ 356 (574)
T 2iut_A 279 AANALRWSVAEMERRYRLMAA--MGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMM 356 (574)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--cCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHh
Confidence 333333332 11111100 1223344433333221111 01 2389999988876
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cC
Q 005200 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PR 631 (709)
Q Consensus 594 ~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~r 631 (709)
... . ..+.+.+..|.+.++.+|+++|+.+| +.
T Consensus 357 ~~~----~--~~~~~~L~~Iar~GRa~GIhLIlaTQRPs 389 (574)
T 2iut_A 357 MIV----G--KKVEELIARIAQKARAAGIHLILATQRPS 389 (574)
T ss_dssp HHT----C--HHHHHHHHHHHHHCTTTTEEEEEEESCCC
T ss_pred hhh----h--HHHHHHHHHHHHHHhhCCeEEEEEecCcc
Confidence 421 1 23566788888899999999999999 54
No 118
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.99 E-value=0.0074 Score=59.54 Aligned_cols=42 Identities=17% Similarity=0.065 Sum_probs=36.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
...+..++|.|+||+|||+++..++..+... +.++.|++.+.
T Consensus 49 ~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~~~~ 90 (242)
T 3bos_A 49 GDGVQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIPLGI 90 (242)
T ss_dssp TCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEGGG
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHHH
Confidence 3357799999999999999999999888776 89999998753
No 119
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.98 E-value=0.0067 Score=56.07 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=34.1
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
+|+.+.|.|++|+|||+++.-++..+... |.++.|++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GKNAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TCCEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CCcEEEEcHH
Confidence 79999999999999999999888877654 8889998765
No 120
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.98 E-value=0.046 Score=65.01 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=26.0
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +++|+++.|.|++|+|||||+......
T Consensus 600 Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~ 633 (916)
T 3pih_A 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYP 633 (916)
T ss_dssp CCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHH
T ss_pred ccccceEEcCCcEEEEEccCCCChhhhHHHHHHH
Confidence 444433 999999999999999999998654443
No 121
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.95 E-value=0.011 Score=62.97 Aligned_cols=64 Identities=13% Similarity=0.167 Sum_probs=54.5
Q ss_pred ccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhc-CCeEEEEECCCCHHHHH
Q 005200 449 FGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSMENKVREHA 512 (709)
Q Consensus 449 ~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~-g~~Vly~SlE~~~~~~~ 512 (709)
..+.||+..+|-++-+.+|+-+.|.|++|+|||+++.+++..++.++ +..++|+...+..+++.
T Consensus 156 ~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~ 220 (422)
T 3ice_A 156 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVT 220 (422)
T ss_dssp CTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHH
T ss_pred CcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHH
Confidence 45778999999888899999999999999999999999999888764 44577888888877654
No 122
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.95 E-value=0.011 Score=65.77 Aligned_cols=43 Identities=14% Similarity=0.300 Sum_probs=33.7
Q ss_pred EEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cC
Q 005200 583 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PR 631 (709)
Q Consensus 583 lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~r 631 (709)
+||||.+..++.. ....+.+++..|.+.++..|+++|+++| +.
T Consensus 300 vlvIDE~~~ll~~------~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 300 VVLVDEFADLMMT------VGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEETHHHHHHH------HHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEeCHHHHHhh------hhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8999988777641 1234667788888899999999999999 54
No 123
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.90 E-value=0.039 Score=64.66 Aligned_cols=114 Identities=22% Similarity=0.208 Sum_probs=67.4
Q ss_pred hccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHH
Q 005200 462 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 541 (709)
Q Consensus 462 l~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~ 541 (709)
+++.+-.=++|.|+||+|||+++..+|.. .|.++++++.. ++. +. ...+
T Consensus 233 ~g~~~p~GILL~GPPGTGKT~LAraiA~e----lg~~~~~v~~~----~l~--------sk------------~~ge--- 281 (806)
T 3cf2_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANE----TGAFFFLINGP----EIM--------SK------------LAGE--- 281 (806)
T ss_dssp CCCCCCCEEEEECCTTSCHHHHHHHHHTT----TTCEEEEEEHH----HHH--------SS------------CTTH---
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHH----hCCeEEEEEhH----Hhh--------cc------------cchH---
Confidence 34344446899999999999998876653 37777776532 111 00 0000
Q ss_pred HHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCC--CCCCHHHHHHHHHHHHHHHHHH
Q 005200 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP--VSQTETEYVSQMLTMVKRFAQH 619 (709)
Q Consensus 542 ~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~--~~~~~~~~~~~i~~~Lk~lA~~ 619 (709)
.+..+..+-..+....+-+|+||.+-.+..... .+..+...+.+++..+..+...
T Consensus 282 -----------------------se~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~ 338 (806)
T 3cf2_A 282 -----------------------SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp -----------------------HHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG
T ss_pred -----------------------HHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc
Confidence 111111122223456789999998777664332 2233445566777777777777
Q ss_pred hCcEEEEEec
Q 005200 620 HACHVWFVAH 629 (709)
Q Consensus 620 ~~i~Vi~v~h 629 (709)
.++.||..+.
T Consensus 339 ~~V~VIaaTN 348 (806)
T 3cf2_A 339 AHVIVMAATN 348 (806)
T ss_dssp GCEEEEEECS
T ss_pred CCEEEEEecC
Confidence 7777777665
No 124
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.033 Score=60.66 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=29.4
Q ss_pred ccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 463 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 463 ~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
|+++-.=+++.||||+|||.+|..+|... |.+++.++.
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~----~~~f~~v~~ 248 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQT----NATFLKLAA 248 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH----TCEEEEEEG
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHh----CCCEEEEeh
Confidence 44444568999999999999988776653 788887764
No 125
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=95.88 E-value=0.21 Score=49.86 Aligned_cols=138 Identities=10% Similarity=-0.005 Sum_probs=74.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE-----CC-----CCHHHHHHHHHHHHc-CCCccccccCCCCCCCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS-----ME-----NKVREHARKLLEKHI-KKPFFEANYGGSAERMT 537 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S-----lE-----~~~~~~~~Rl~~~~~-g~~~~~i~~g~~~~~l~ 537 (709)
+++.+-.+|+|||++++.|+..+..+ |.+|.||- .+ ......+.+-.+... +.+...+.--.-....+
T Consensus 24 i~ItgT~t~vGKT~vs~gL~~~L~~~-G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~p~~~~~p~s 102 (242)
T 3qxc_A 24 LFISATNTNAGKTTCARLLAQYCNAC-GVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVSA 102 (242)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTTCTTCCHHHHCCEECSSSSC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhC-CCceEEEeeeecCCcccCCCCchHHHHHHHHHHHhCCCChHHeeeEEECCCCC
Confidence 55666669999999999999998887 99999994 22 111111111112222 44322110000000111
Q ss_pred HHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHH
Q 005200 538 VEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFA 617 (709)
Q Consensus 538 ~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA 617 (709)
+... ..+... ......+.|.+.++.+ ..+.++||||.-..+..+..... ....+|
T Consensus 103 p~~a----a~~~g~--------~~~i~~~~I~~~~~~l--~~~~D~vlIEGagGl~~pl~~~~-----------~~adlA 157 (242)
T 3qxc_A 103 PLIA----QQEEDP--------NAPIDTDNLTQRLHNF--TKTYDLVIVEGAGGLCVPITLEE-----------NMLDFA 157 (242)
T ss_dssp HHHH----HHHHCT--------TCCCCHHHHHHHHHHG--GGTCSEEEEECCSCTTCBSSSSC-----------BHHHHH
T ss_pred hHHH----HHHcCC--------CCcCCHHHHHHHHHHH--HhcCCEEEEECCCCccccccccc-----------hHHHHH
Confidence 2110 011110 0023466676666554 34689999998777654321110 123468
Q ss_pred HHhCcEEEEEeccCC
Q 005200 618 QHHACHVWFVAHPRQ 632 (709)
Q Consensus 618 ~~~~i~Vi~v~h~rk 632 (709)
+.++++||+|+..+.
T Consensus 158 ~~l~~pVILV~~~~l 172 (242)
T 3qxc_A 158 LKLKAKMLLISHDNL 172 (242)
T ss_dssp HHHTCEEEEEECCST
T ss_pred HHcCCCEEEEEcCCC
Confidence 889999999998643
No 126
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.86 E-value=0.057 Score=55.66 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=29.1
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCC----eEEEEE
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGW----KFVLCS 503 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~----~Vly~S 503 (709)
++.-++|.|+||+|||+++..++..+... +. ++++++
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~-~~~~~~~~~~~~ 106 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRL-GYVRKGHLVSVT 106 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHT-TSSSSCCEEEEC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhc-CCcCCCcEEEEc
Confidence 34569999999999999999988887654 33 666665
No 127
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.80 E-value=0.0075 Score=75.19 Aligned_cols=174 Identities=18% Similarity=0.196 Sum_probs=89.9
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC---CCCHHHHHHHHHHHHcCCCc-------cc
Q 005200 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM---ENKVREHARKLLEKHIKKPF-------FE 526 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl---E~~~~~~~~Rl~~~~~g~~~-------~~ 526 (709)
|+++-- +++|+.+.|.|++|+||||++.-+.. +..-....+.+=.. +.+...+..++ +....-+. ..
T Consensus 1095 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r-l~~p~~G~I~iDG~di~~i~~~~lR~~i-~~V~Qdp~LF~gTIreN 1172 (1321)
T 4f4c_A 1095 LKGLSFSVEPGQTLALVGPSGCGKSTVVALLER-FYDTLGGEIFIDGSEIKTLNPEHTRSQI-AIVSQEPTLFDCSIAEN 1172 (1321)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSTTSHHHHHTT-SSCCSSSEEEETTEETTTBCHHHHHTTE-EEECSSCCCCSEEHHHH
T ss_pred ccceeEEECCCCEEEEECCCCChHHHHHHHHhc-CccCCCCEEEECCEEhhhCCHHHHHhhe-EEECCCCEeeCccHHHH
Confidence 444433 99999999999999999998764432 22112334433221 23344443332 11111111 11
Q ss_pred cccCCCCCCCCHHHHHHHHH------HHhc---CcceEEecCCCCCCHH--HHHHHHHHHHHhcCCcEEEEccCcccccC
Q 005200 527 ANYGGSAERMTVEEFEQGKA------WLSN---TFSLIRCENDSLPSIK--WVLDLAKAAVLRHGVRGLVIDPYNELDHQ 595 (709)
Q Consensus 527 i~~g~~~~~l~~e~~~~~~~------~l~~---~~~~i~~~~~~~~~i~--~i~~~i~~~~~~~~~~lIVID~~~~l~~~ 595 (709)
+..|.+....+++++.++.+ ++.. .....--+.....+-. +.+..++.+. .+++++|+|--+.-+
T Consensus 1173 I~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAll--r~~~ILiLDEaTSaL-- 1248 (1321)
T 4f4c_A 1173 IIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALV--RNPKILLLDEATSAL-- 1248 (1321)
T ss_dssp HSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHH--SCCSEEEEESCCCST--
T ss_pred HhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHH--hCCCEEEEeCccccC--
Confidence 22332334578888776643 3322 1211111111223333 4555555544 468999999433222
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeC
Q 005200 596 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665 (709)
Q Consensus 596 ~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~ 665 (709)
..+++ ..+.+.|+++. .|++||+++| ..- ...||.|++|..-
T Consensus 1249 ----D~~tE--~~Iq~~l~~~~--~~~TvI~IAHRLsT--------------------i~~aD~I~Vld~G 1291 (1321)
T 4f4c_A 1249 ----DTESE--KVVQEALDRAR--EGRTCIVIAHRLNT--------------------VMNADCIAVVSNG 1291 (1321)
T ss_dssp ----TSHHH--HHHHHHHTTTS--SSSEEEEECSSSST--------------------TTTCSEEEEESSS
T ss_pred ----CHHHH--HHHHHHHHHHc--CCCEEEEeccCHHH--------------------HHhCCEEEEEECC
Confidence 12222 23444454443 3799999999 321 2468999999643
No 128
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.77 E-value=0.081 Score=54.24 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=27.4
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
++.-++|.|+||+|||+++..++... +.++.+++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~----~~~~~~i~~ 87 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC----SATFLNISA 87 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT----TCEEEEEES
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh----CCCeEEeeH
Confidence 45688999999999999988776543 667766654
No 129
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.74 E-value=0.02 Score=62.78 Aligned_cols=65 Identities=25% Similarity=0.280 Sum_probs=53.4
Q ss_pred CcccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHH
Q 005200 447 DEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~ 511 (709)
....+.||+..+|.+..+.+|+-.+|.|++|+|||+++..++.+.+.+++.-+.|....+...+.
T Consensus 131 ~~e~l~TGir~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev 195 (473)
T 1sky_E 131 EVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREG 195 (473)
T ss_dssp SCCEECCSCHHHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHH
T ss_pred cCccccccchHHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHH
Confidence 34568899999999888778999999999999999999999999887766666676666655443
No 130
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.73 E-value=0.041 Score=56.72 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=28.5
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
+...++|.|+||+|||+++..+|..+ |.++++++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l----~~~~i~v~~ 69 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM----GINPIMMSA 69 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH----TCCCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh----CCCEEEEeH
Confidence 33478889999999999999887765 788888874
No 131
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=95.69 E-value=0.013 Score=62.65 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=33.8
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
.++++.|..|+||||++.++|..++.. |.+|+.+++
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~-g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQ-GKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCeEEEeC
Confidence 367899999999999999999999987 999999999
No 132
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.66 E-value=0.039 Score=62.74 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=26.7
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.|+++-- +++|+.+.|.|++|+||||++.-++-
T Consensus 358 ~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3555444 99999999999999999999876543
No 133
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.57 E-value=0.03 Score=63.73 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=27.4
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+++-- +++|+.+.|.|++|+||||++.-++--
T Consensus 358 ~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3555544 999999999999999999998766543
No 134
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.55 E-value=0.047 Score=54.73 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=28.7
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
....-++|.|+||+|||+++..++... +.++++++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~----~~~~~~~~~~ 73 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA----QVPFLAMAGA 73 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH----TCCEEEEETT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----CCCEEEechH
Confidence 444568999999999999999877643 6777777654
No 135
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.53 E-value=0.014 Score=56.90 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=33.8
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
..+|+++.|.|++|+|||||+..++-.+-.. |..+.+++++
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~~~g~v~~d 59 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GLPAEVVPMD 59 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TCCEEEEESG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCceEEEecC
Confidence 4679999999999999999998887766543 6668888876
No 136
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.52 E-value=0.07 Score=56.48 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=40.6
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEE------ECCCCHHHHHHHHHHHHcCC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC------SMENKVREHARKLLEKHIKK 522 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~------SlE~~~~~~~~Rl~~~~~g~ 522 (709)
..+|.-++|.|+||+|||+++..++..+.. ..+...+ +.++...+...+......+.
T Consensus 67 ~~~~~~vLl~GppGtGKT~la~~la~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (368)
T 3uk6_A 67 KIAGRAVLIAGQPGTGKTAIAMGMAQALGP--DTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGV 129 (368)
T ss_dssp CCTTCEEEEEESTTSSHHHHHHHHHHHHCS--SCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcc--cCCcccccchhhhhcccchhHHHHHHHHHHHHH
Confidence 445678999999999999999998887642 2354443 45677777777766655544
No 137
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.47 E-value=0.068 Score=63.80 Aligned_cols=29 Identities=24% Similarity=0.176 Sum_probs=25.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNIN 492 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a 492 (709)
+.+|++++|.|++|+||||++.+++....
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial~~~ 687 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGVIVL 687 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67799999999999999999999965544
No 138
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.47 E-value=0.056 Score=67.36 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=25.0
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHH
Q 005200 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
|+++-- +++|+++.|.|++|+||||++.-+.
T Consensus 434 L~~isl~i~~G~~vaivG~sGsGKSTll~ll~ 465 (1321)
T 4f4c_A 434 LRGMNLRVNAGQTVALVGSSGCGKSTIISLLL 465 (1321)
T ss_dssp EEEEEEEECTTCEEEEEECSSSCHHHHHHHHT
T ss_pred eeceEEeecCCcEEEEEecCCCcHHHHHHHhc
Confidence 444433 9999999999999999999976443
No 139
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.46 E-value=0.084 Score=56.67 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=28.5
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
++.-++|.|+||+|||++|..++.. .+.++++++..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~----~~~~~~~v~~~ 182 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE----SNATFFNISAA 182 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH----TTCEEEEECSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh----hcCcEEEeeHH
Confidence 4567999999999999998877543 37888887763
No 140
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.43 E-value=0.016 Score=55.98 Aligned_cols=39 Identities=28% Similarity=0.224 Sum_probs=33.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
..+|++++|.|++|+||||++..++..+-.. |..+.|+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~-G~~~~~~d 60 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQK-GKLCYILD 60 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CceEEEec
Confidence 6789999999999999999999998887643 77666666
No 141
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.42 E-value=0.0079 Score=57.44 Aligned_cols=40 Identities=30% Similarity=0.374 Sum_probs=29.6
Q ss_pred hccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 462 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 462 l~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
+.+.+|++++|.|+||+||||++..++-. .+...++++.+
T Consensus 4 ~~i~~g~~i~l~G~~GsGKSTl~~~La~~----~~~g~i~i~~d 43 (191)
T 1zp6_A 4 TDDLGGNILLLSGHPGSGKSTIAEALANL----PGVPKVHFHSD 43 (191)
T ss_dssp --CCTTEEEEEEECTTSCHHHHHHHHHTC----SSSCEEEECTT
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHhc----cCCCeEEEccc
Confidence 34788999999999999999998887653 24455566543
No 142
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.41 E-value=0.061 Score=60.46 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=31.3
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++| .+.++.+ ......+++.|+++++ .+.+||+++|.
T Consensus 174 ~~~P~lLlLD-------EPTs~LD-~~~~~~l~~~L~~l~~-~g~tvi~vsHd 217 (538)
T 1yqt_A 174 LRNATFYFFD-------EPSSYLD-IRQRLNAARAIRRLSE-EGKSVLVVEHD 217 (538)
T ss_dssp HSCCSEEEEE-------STTTTCC-HHHHHHHHHHHHHHHH-TTCEEEEECSC
T ss_pred hcCCCEEEEE-------CCcccCC-HHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 4689999999 2222333 3345567777888876 59999999994
No 143
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.41 E-value=0.012 Score=59.66 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=32.1
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
++.+++|.|.||+||||++..++..+... |.++++++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~-g~~~i~~~~ 40 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKN-NIDVIVLGS 40 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEECT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhC-CCEEEEECc
Confidence 45689999999999999999999877654 888887765
No 144
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.027 Score=64.15 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.9
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
+.+|+++.|.|++|+||||++.-++-
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhc
Confidence 78999999999999999999775543
No 145
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.35 E-value=0.067 Score=59.05 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=27.3
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
+++| ++|.|+||+|||+++..++... +.++++++.
T Consensus 48 ~p~g--vLL~GppGtGKT~Laraia~~~----~~~f~~is~ 82 (476)
T 2ce7_A 48 MPKG--ILLVGPPGTGKTLLARAVAGEA----NVPFFHISG 82 (476)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHH----TCCEEEEEG
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHc----CCCeeeCCH
Confidence 4455 8899999999999998776542 678777764
No 146
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.29 E-value=0.021 Score=59.95 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=36.8
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
.++++.|..|+||||++.++|..+|.. |.+|+.++++..
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rVLlvD~D~~ 53 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARS-GKKTLVISTDPA 53 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEECCSS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence 689999999999999999999999987 999999999974
No 147
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.29 E-value=0.014 Score=56.43 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=32.2
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
.-++|.|+||+|||+++..++..+..+ +.+|+|++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~-~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR-NVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEhH
Confidence 578999999999999999998888765 8999998753
No 148
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.27 E-value=0.019 Score=55.64 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=34.8
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
..+|.++.|.|++|+||||++..++..+... |.+|.+++.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~-~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ-GISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCeEEEeccCc
Confidence 4678999999999999999999888766554 78888887663
No 149
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=95.22 E-value=0.017 Score=61.34 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=40.4
Q ss_pred hhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHH--HhcCCeEEEEECCCC
Q 005200 457 ALNELYNVLPGELTIVTGVPNSGKSEWIDALICNIN--EHAGWKFVLCSMENK 507 (709)
Q Consensus 457 ~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a--~~~g~~Vly~SlE~~ 507 (709)
.|+.++.-..-.+++++|..|+||||++.++|..+| .. |.+|+.++.+..
T Consensus 8 ~l~~l~~~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~-G~rVLLvD~D~~ 59 (354)
T 2woj_A 8 NLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQP-NKQFLLISTDPA 59 (354)
T ss_dssp SCHHHHTCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCT-TSCEEEEECCSS
T ss_pred cHHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC-CCeEEEEECCCC
Confidence 344444322235899999999999999999999999 65 999999999985
No 150
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.18 E-value=0.017 Score=58.04 Aligned_cols=41 Identities=12% Similarity=0.298 Sum_probs=36.6
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
..+.-++++.|.+|+||||++.+++..++ . |.+|+.++++.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~-g~~v~vvd~D~ 51 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-D-NYKVAYVNLDT 51 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-T-TSCEEEEECCS
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-C-CCeEEEEeCCC
Confidence 34556999999999999999999999998 6 99999999885
No 151
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.17 E-value=0.025 Score=61.79 Aligned_cols=65 Identities=23% Similarity=0.236 Sum_probs=56.2
Q ss_pred CcccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHH
Q 005200 447 DEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~ 511 (709)
....+.||+..+|-++-+.+|+=..|.|++|+|||+++.+++.+++.+++.-++|....+..++.
T Consensus 133 ~~e~l~TGir~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv 197 (482)
T 2ck3_D 133 EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 197 (482)
T ss_dssp CCCEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHH
T ss_pred cCcCCccceEEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHH
Confidence 34578899999999999999999999999999999999999999887655667788888876664
No 152
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.14 E-value=0.091 Score=59.75 Aligned_cols=32 Identities=34% Similarity=0.468 Sum_probs=26.0
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
.|+++-- +++|+.+.|.|++|+||||++.-++
T Consensus 358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTT
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555533 9999999999999999999976544
No 153
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.11 E-value=0.019 Score=66.14 Aligned_cols=53 Identities=26% Similarity=0.428 Sum_probs=44.3
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLE 517 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~-~~~~~~Rl~~ 517 (709)
+....+++|.||||+|||+.+.+++.++..+ |.+||.++.-.. ++.+..|+..
T Consensus 202 l~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~-~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 202 LSQKELAIIHGPPGTGKTTTVVEIILQAVKQ-GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHCSSEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHHHH
T ss_pred hcCCCceEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEcCchHHHHHHHHHHHh
Confidence 4456799999999999999999999999887 999999998754 5567777643
No 154
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.08 E-value=0.025 Score=53.35 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=32.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
++.|+|++|+||||++..++..+..+ |.+|..+..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~-g~~v~~ik~~~ 42 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVRE-GWRVGTVKHHG 42 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhc-CCeeeEEEeCC
Confidence 78899999999999999999888766 99999998764
No 155
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.05 E-value=0.037 Score=58.87 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=54.2
Q ss_pred ccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhc-CCeEEEEECCCCHHHH
Q 005200 449 FGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSMENKVREH 511 (709)
Q Consensus 449 ~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~-g~~Vly~SlE~~~~~~ 511 (709)
..+.||+..+|-++-+.+|+=..|.|++|+|||+++.+++.+++.++ +..++|+...+..+++
T Consensus 157 e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV 220 (427)
T 3l0o_A 157 DPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEV 220 (427)
T ss_dssp STTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHH
T ss_pred cchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchH
Confidence 46789999999988899999999999999999999999999988764 4567788888887765
No 156
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.22 Score=51.88 Aligned_cols=58 Identities=10% Similarity=0.104 Sum_probs=42.0
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhc------CCeEEEEECC--CCHHHHHHHHHHHHcCC
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHA------GWKFVLCSME--NKVREHARKLLEKHIKK 522 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~------g~~Vly~SlE--~~~~~~~~Rl~~~~~g~ 522 (709)
.++.-++|.|+||+|||+++..++..+.... +..++|+..- .++..++..++..+.|.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~ 108 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE 108 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC
Confidence 4556789999999999999999988876431 2467777753 34667777887777665
No 157
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.05 E-value=0.025 Score=53.47 Aligned_cols=38 Identities=24% Similarity=0.210 Sum_probs=31.5
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
.+|.+++|.|.+|+||||++..++..+... |.+++++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~-g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCH-GIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhC-CCcEEEEC
Confidence 368899999999999999999988876553 88887775
No 158
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.04 E-value=0.021 Score=59.12 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=36.6
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
.+.++.|+|..|+||||++.++|..++.. |.+|+.+.++..
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~~ 80 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSIL-GKRVLQIGCDPK 80 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEESSS
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 45677777999999999999999999987 999999999854
No 159
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.03 E-value=0.055 Score=64.39 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=25.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNIN 492 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a 492 (709)
+.+|++++|.||+|+||||++.+++....
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~~ 698 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALITI 698 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHHH
Confidence 67899999999999999999999876543
No 160
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.01 E-value=0.017 Score=66.07 Aligned_cols=32 Identities=25% Similarity=0.508 Sum_probs=26.0
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
.|+++-- +++|+.+.|.|++|+||||++.-++
T Consensus 370 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHT
T ss_pred cccceEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4555533 9999999999999999999976543
No 161
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.98 E-value=0.025 Score=55.10 Aligned_cols=40 Identities=20% Similarity=0.084 Sum_probs=34.4
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
+.+|.+++|.|.+|+||||++..++..+-...|.++.+++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 7789999999999999999999998887623388888886
No 162
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.98 E-value=0.018 Score=60.22 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=34.1
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
.+.-++|.|+||+|||+++..++..+... +.+++|++.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~~ 74 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSAD 74 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEHH
Confidence 45689999999999999999999888776 8999999865
No 163
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.95 E-value=0.024 Score=62.19 Aligned_cols=65 Identities=26% Similarity=0.200 Sum_probs=55.0
Q ss_pred CcccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHH
Q 005200 447 DEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~ 511 (709)
....+.||+..+|-++-+.+|+=..|.|++|+|||+++.+++.+++.+++.-++|....+..++.
T Consensus 145 ~~e~l~TGirvID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv 209 (498)
T 1fx0_B 145 KLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREG 209 (498)
T ss_dssp CCCCCCCSCTTHHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHH
T ss_pred cccccccceeEeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHH
Confidence 34568899999999999999999999999999999999999999887666667777777665543
No 164
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.93 E-value=0.074 Score=61.52 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=25.9
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
.|+++-- +++|+++.|.|++|+|||||+.-++
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 3555533 9999999999999999999986443
No 165
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.93 E-value=0.024 Score=58.96 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=33.6
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHH-HhcCCeEEEEECC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNIN-EHAGWKFVLCSME 505 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a-~~~g~~Vly~SlE 505 (709)
+.-++|.|+||+|||+++..++..+. .. |.+|+|++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~-g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK-GVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS-CCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEHH
Confidence 57889999999999999999999888 65 9999999753
No 166
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.92 E-value=0.039 Score=62.91 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=26.6
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.|+++-- +++|+.+.|.|++|+||||++.-++-
T Consensus 359 vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTT
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3555544 99999999999999999999875543
No 167
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.92 E-value=0.031 Score=65.43 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=24.3
Q ss_pred ccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEE
Q 005200 463 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC 502 (709)
Q Consensus 463 ~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~ 502 (709)
++.+..=++++||||+|||.+|..+|.. .+.+.+.+
T Consensus 507 g~~~~~gvLl~GPPGtGKT~lAkaiA~e----~~~~f~~v 542 (806)
T 3cf2_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANE----CQANFISI 542 (806)
T ss_dssp CCCCCSCCEEESSTTSSHHHHHHHHHHT----TTCEEEEC
T ss_pred CCCCCceEEEecCCCCCchHHHHHHHHH----hCCceEEe
Confidence 4333444789999999999987765553 36665433
No 168
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.86 E-value=0.017 Score=63.06 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=35.0
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
.+++|.|++|+||||++..++..++.+ |.+|++++.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~-G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR-GLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH-HCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccc
Confidence 488999999999999999999999987 99999999874
No 169
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.85 E-value=0.021 Score=60.11 Aligned_cols=40 Identities=18% Similarity=0.118 Sum_probs=36.5
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
-.++++.|..|+||||++.++|..+|.. |.+|+.++++-.
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~-g~~vllid~D~~ 55 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKV-RRSVLLLSTDPA 55 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTS-SSCEEEEECCSS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhC-CCcEEEEECCCC
Confidence 3589999999999999999999999987 999999999943
No 170
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.85 E-value=0.12 Score=54.91 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=28.0
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
+..-++|.|+||+|||++|..++... +.++++++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~----~~~~~~i~~ 150 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS----GATFFSISA 150 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT----TCEEEEEEG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc----CCeEEEEeh
Confidence 44578999999999999998876542 778887775
No 171
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.84 E-value=0.013 Score=57.70 Aligned_cols=35 Identities=14% Similarity=0.057 Sum_probs=23.2
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
+|+++-- +.+|+++.|.|++|+||||++..++-..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4555544 8999999999999999999998776643
No 172
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=94.82 E-value=0.066 Score=63.08 Aligned_cols=29 Identities=41% Similarity=0.499 Sum_probs=24.7
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHH
Q 005200 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDA 486 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~q 486 (709)
|+.+-- +++|+++.|+|++|+|||||+..
T Consensus 513 L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~ 542 (842)
T 2vf7_A 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVSQ 542 (842)
T ss_dssp EEEEEEEEESSSEEEEECCTTSSHHHHCCC
T ss_pred cccceEEEcCCCEEEEEcCCCcCHHHHHHH
Confidence 444433 99999999999999999999986
No 173
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.78 E-value=0.091 Score=63.46 Aligned_cols=27 Identities=22% Similarity=0.065 Sum_probs=23.8
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHH
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINE 493 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~ 493 (709)
|++++|.|++|+||||++.++++....
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl~~~~ 815 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGLLAVM 815 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHH
Confidence 899999999999999999999665543
No 174
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.77 E-value=0.027 Score=59.65 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=40.1
Q ss_pred hhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHH--HhcCCeEEEEECCC
Q 005200 457 ALNELYNVLPGELTIVTGVPNSGKSEWIDALICNIN--EHAGWKFVLCSMEN 506 (709)
Q Consensus 457 ~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a--~~~g~~Vly~SlE~ 506 (709)
.|+.++.-..-.++++.|..|+||||++.++|..+| .. |.+|+.++++.
T Consensus 8 ~L~~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~-g~~vllid~D~ 58 (348)
T 3io3_A 8 TLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP-NEQFLLISTDP 58 (348)
T ss_dssp SSHHHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT-TSCEEEEECCS
T ss_pred hHHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC-CCeEEEEECCC
Confidence 344444422336999999999999999999999999 55 99999999994
No 175
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.76 E-value=0.036 Score=56.51 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=34.3
Q ss_pred CcEEEEEc-cCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 467 GELTIVTG-VPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 467 G~L~ii~G-~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
..+++|++ .+|+||||++.++|..+|.. |.+|+++.+++.
T Consensus 82 ~kvI~vts~kgG~GKTt~a~nLA~~lA~~-G~rVLLID~D~~ 122 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKSTIAANLAVAYAQA-GYKTLIVDGDMR 122 (271)
T ss_dssp CCEEEEECSSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCSS
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCC
Confidence 34666665 58999999999999999987 999999999975
No 176
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.75 E-value=0.026 Score=59.80 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=38.0
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
....++++.|..|+||||++.++|..+|.. |.+|+.++++..
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rVLlvD~D~~ 65 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEK-GLKVVIVSTDPA 65 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHS-SCCEEEEECCTT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 345688999999999999999999999987 999999999974
No 177
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.72 E-value=0.03 Score=63.76 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=37.7
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
...+++++|.+|+||||++.++|..+|.. |.+|++++++..
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~-G~rVLlvd~D~~ 47 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQ-GKRVLLVSTDPA 47 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCTT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHC-CCcEEEEECCCC
Confidence 35689999999999999999999999987 999999999974
No 178
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.72 E-value=0.034 Score=58.69 Aligned_cols=49 Identities=27% Similarity=0.312 Sum_probs=39.7
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
-|+.+.- +.+|+++.|.|+||+|||||+..++-..... +..|.+++.+.
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~-~g~v~i~~~d~ 93 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA-GHKVAVLAVDP 93 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECG
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC-CCEEEEEEEcC
Confidence 3455544 8899999999999999999999888766554 88999888664
No 179
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.70 E-value=0.16 Score=59.12 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=39.6
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKL 515 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~-~~~~~~Rl 515 (709)
+..|+-+++.|++|+|||+.+...+++.....|.+++|+..--. ..+.+.++
T Consensus 43 ~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~ 95 (715)
T 2va8_A 43 LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTF 95 (715)
T ss_dssp TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHH
T ss_pred hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHH
Confidence 56789999999999999999988888776645889999975421 33444444
No 180
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.67 E-value=0.025 Score=54.46 Aligned_cols=38 Identities=11% Similarity=0.305 Sum_probs=33.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
+.+..+..|+||||++.++|..++.. |.+|+++.++..
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~~-g~~vlliD~D~~ 41 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSRS-GYNIAVVDTDPQ 41 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCTT
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHC-CCeEEEEECCCC
Confidence 44556889999999999999999986 999999999843
No 181
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=94.65 E-value=0.037 Score=57.32 Aligned_cols=40 Identities=23% Similarity=0.384 Sum_probs=34.5
Q ss_pred CcEEEEEc-cCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 467 GELTIVTG-VPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 467 G~L~ii~G-~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
+.+++|++ .+|+||||++.++|..+|.. |.+|+.+.+++.
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~lA~~-G~rVLLID~D~r 144 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQS-DQKVLFIDADLR 144 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHT-TCCEEEEECCTT
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHhC-CCcEEEEECCCC
Confidence 34666666 58999999999999999987 999999999974
No 182
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.65 E-value=0.03 Score=58.84 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=37.0
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
..+.+++|.+|+||||++.++|..+|.. |.+|++++++..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~-G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKV-RSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTS-SSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCeEEEEECCCC
Confidence 3588999999999999999999999987 999999999976
No 183
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.64 E-value=0.028 Score=53.36 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=29.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
+++|.|+||+||||++..|+..+-.. |.++.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ-GINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CceEEEEE
Confidence 68999999999999999999887644 78888885
No 184
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.63 E-value=0.075 Score=60.48 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=44.2
Q ss_pred chhhhhhhc---cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 455 WRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 455 ~~~LD~ll~---l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
.+.|+.+++ -..+.++++.|.+|+|||+++.++|..++.. |.+|++++++..
T Consensus 312 ~~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~-g~~vllvD~Dp~ 366 (589)
T 1ihu_A 312 IPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADM-GFDVHLTTSDPA 366 (589)
T ss_dssp CCCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESCCC
T ss_pred cchhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHHHC-CCcEEEEeCCCc
Confidence 467777776 3345688889999999999999999999987 999999999965
No 185
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.63 E-value=0.019 Score=55.37 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=22.9
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+.+|+++.|.|++|+||||++..++-.
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 457999999999999999998877653
No 186
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.62 E-value=0.019 Score=54.58 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=22.8
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.+|++++|.|++|+||||++..++..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999887664
No 187
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=94.61 E-value=0.085 Score=59.83 Aligned_cols=50 Identities=16% Similarity=0.083 Sum_probs=34.4
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHH--Hh-cCCeEEEEECCCC-HHHHHHHH
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNIN--EH-AGWKFVLCSMENK-VREHARKL 515 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a--~~-~g~~Vly~SlE~~-~~~~~~Rl 515 (709)
...+++|.|++|+|||+++.+++.... .. -...|+|+++... ...+...+
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l 199 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKL 199 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHH
Confidence 356999999999999999999986542 22 1235888887644 33333333
No 188
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.61 E-value=0.1 Score=52.26 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=24.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
-++|.|+||+|||+++..++... +.++++++.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~----~~~~~~i~~ 78 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA----KVPFFTISG 78 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH----TCCEEEECS
T ss_pred eEEEECcCCCCHHHHHHHHHHHc----CCCEEEEeH
Confidence 38899999999999999877543 567766653
No 189
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.59 E-value=0.022 Score=54.95 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=23.7
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
+.+|..++|.|+||+||||++..++..+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 7789999999999999999999888654
No 190
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.59 E-value=0.023 Score=54.00 Aligned_cols=37 Identities=24% Similarity=0.483 Sum_probs=29.0
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
|.+++|.|+||+||||++..|+..+-.+ |.+..++++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~~~i~~ 39 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKE-GVNYKMVSF 39 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTT-TCCCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CcceEEEeh
Confidence 5689999999999999999998876543 644555653
No 191
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.59 E-value=0.076 Score=57.36 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=27.3
Q ss_pred cchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005200 454 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 454 g~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
++..++++-- +.+| +++|.|++|+||||++.-+..
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHH
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 3455655544 9999 999999999999999876543
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.58 E-value=0.17 Score=53.62 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=26.6
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
+..-++|.|+||+|||++|..++..+ +.++++++
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~----~~~~~~v~ 116 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA----NSTFFSVS 116 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH----TCEEEEEE
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh----CCCEEEee
Confidence 33457889999999999998877654 67777765
No 193
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.56 E-value=0.02 Score=55.22 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.0
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+.+|++++|.|++|+||||++..++..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999998877654
No 194
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.50 E-value=0.085 Score=56.87 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=67.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHHHHH-cCCCccccccCCCCCCCCHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKH-IKKPFFEANYGGSAERMTVEEF 541 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~-~~~~~~Rl~~~~-~g~~~~~i~~g~~~~~l~~e~~ 541 (709)
+..|.-+++.+++|+|||.+.+-.+...... +..++|+..--. ..++..++.... .++....+ .| ..+..+.
T Consensus 33 i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~-~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~-~g----~~~~~~~ 106 (414)
T 3oiy_A 33 IVQGKSFTMVAPTGVGKTTFGMMTALWLARK-GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGF-YS----SMKKEEK 106 (414)
T ss_dssp HTTTCCEECCSCSSSSHHHHHHHHHHHHHTT-TCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEEC-CT----TSCHHHH
T ss_pred HhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHHccCCceEEEE-EC----CCChhhH
Confidence 5567788999999999999666666666544 888999986533 445555554422 13332222 12 3454444
Q ss_pred HHHHHHHhc--CcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCccc
Q 005200 542 EQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL 592 (709)
Q Consensus 542 ~~~~~~l~~--~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l 592 (709)
......+.. ..+++ .|++.+...+.. .....+++||||-...+
T Consensus 107 ~~~~~~l~~~~~~Iiv-------~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~ 151 (414)
T 3oiy_A 107 EKFEKSFEEDDYHILV-------FSTQFVSKNREK-LSQKRFDFVFVDDVDAV 151 (414)
T ss_dssp HHHHHHHHHTCCSEEE-------EEHHHHHHCHHH-HTTCCCSEEEESCHHHH
T ss_pred HHHHHHhhcCCCCEEE-------ECHHHHHHHHHH-hccccccEEEEeChHhh
Confidence 433344433 23333 245666555543 33457999999965443
No 195
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=94.49 E-value=0.034 Score=54.94 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=33.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
+.+..+..|+||||++.++|..++.. |.+|+++.++..
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 42 (237)
T 1g3q_A 5 ISIVSGKGGTGKTTVTANLSVALGDR-GRKVLAVDGDLT 42 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCTT
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHhc-CCeEEEEeCCCC
Confidence 45667789999999999999999987 999999999863
No 196
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=94.49 E-value=0.039 Score=55.56 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=34.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
+.+..+..|+||||++.++|..++.. |.+|+++.++..
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 42 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQL-GHDVTIVDADIT 42 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHT-TCCEEEEECCCS
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhC-CCcEEEEECCCC
Confidence 56678899999999999999999987 999999999863
No 197
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.48 E-value=0.024 Score=60.08 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=35.6
Q ss_pred ccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 449 FGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 449 ~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
..+.||...+|.++.+.+|+.+.|.|++|+||||++..++-.
T Consensus 53 ~~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 53 QPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp SEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 456678889999966999999999999999999997666554
No 198
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.45 E-value=0.025 Score=53.24 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=26.3
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
|.+++|.|+||+||||++..++..+ +.+.+.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l----~~~~~~~~~ 36 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL----PEPWLAFGV 36 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS----SSCEEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc----CCCeEEecc
Confidence 5689999999999999988876643 555555554
No 199
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.45 E-value=0.036 Score=58.87 Aligned_cols=41 Identities=29% Similarity=0.414 Sum_probs=34.6
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCH
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~ 508 (709)
.-.++|+|.||+||||++.+++..++.. |.+|+.++.+...
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~-g~kV~vi~~Dp~~ 119 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIER-GHRVAVLAVDPSS 119 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEEEC---
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhC-CCceEEEecCCCC
Confidence 3488999999999999999999998876 9999999988543
No 200
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.45 E-value=0.05 Score=55.14 Aligned_cols=46 Identities=30% Similarity=0.343 Sum_probs=33.7
Q ss_pred hhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 457 ALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 457 ~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
.|+++. +.+|++++|.|++|+||||++.-++-.........|.+..
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 344444 8999999999999999999998877655432145665543
No 201
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.30 E-value=0.041 Score=55.56 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=34.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCH
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~ 508 (709)
+.+..+..|+||||++.++|..++.. |.+|+++.++...
T Consensus 21 I~v~s~kGGvGKTT~a~nLA~~la~~-G~~VlliD~D~~~ 59 (262)
T 2ph1_A 21 IAVMSGKGGVGKSTVTALLAVHYARQ-GKKVGILDADFLG 59 (262)
T ss_dssp EEEECSSSCTTHHHHHHHHHHHHHHT-TCCEEEEECCSSC
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence 66677888999999999999999987 9999999998653
No 202
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=94.28 E-value=0.041 Score=55.15 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=33.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
+.+..+..|+||||++.++|..++.+ |.+|+++.++.
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~-g~~VlliD~D~ 41 (260)
T 3q9l_A 5 IVVTSGKGGVGKTTSSAAIATGLAQK-GKKTVVIDFAI 41 (260)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhC-CCcEEEEECCC
Confidence 45667889999999999999999987 99999999986
No 203
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.24 E-value=0.096 Score=51.64 Aligned_cols=56 Identities=14% Similarity=0.064 Sum_probs=36.0
Q ss_pred hhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHH------hcCCeEEEEECCCC-HHHHHHHHH
Q 005200 461 LYN-VLPGELTIVTGVPNSGKSEWIDALICNINE------HAGWKFVLCSMENK-VREHARKLL 516 (709)
Q Consensus 461 ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~------~~g~~Vly~SlE~~-~~~~~~Rl~ 516 (709)
.+. +..|.-+++.+++|+|||...+-.+.+... ..+.+++|+..--. ..++..++.
T Consensus 55 ~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 118 (236)
T 2pl3_A 55 TIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLR 118 (236)
T ss_dssp HHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 344 556778999999999999876655555442 23677888875322 334444443
No 204
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.22 E-value=0.026 Score=54.97 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.9
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.+|.+++|.|++|+||||++..|+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 57999999999999999998877654
No 205
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.20 E-value=0.026 Score=54.89 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+.+|+++.|.|++|+||||++.-++--
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 889999999999999999998876643
No 206
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.20 E-value=0.039 Score=57.53 Aligned_cols=42 Identities=17% Similarity=0.022 Sum_probs=33.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcC-CeEEEEECC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-WKFVLCSME 505 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g-~~Vly~SlE 505 (709)
..+|+++.|.|++|+|||||+..|+--.....| ..|.|++.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 578999999999999999999877665533223 468888876
No 207
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.18 E-value=0.043 Score=57.24 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=37.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
+..-.++.|+|--|+||||.+.+||..+|.. |.+|+.+.++-
T Consensus 45 i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~-GkkVllID~Dp 86 (314)
T 3fwy_A 45 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL-GKRVLQIGCDP 86 (314)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEESS
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 4445699999999999999999999999998 99999999983
No 208
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.16 E-value=0.05 Score=51.56 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=32.4
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
.+++|+|++|+||||++..++..+... |.+|..+..+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~-g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR-GIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc-CCceeEEeeCC
Confidence 488999999999999999998887655 88888887654
No 209
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.15 E-value=0.027 Score=55.61 Aligned_cols=27 Identities=37% Similarity=0.514 Sum_probs=22.3
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+++|++++|.|++|+||||++..++-.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 889999999999999999998876543
No 210
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.14 E-value=0.035 Score=60.68 Aligned_cols=42 Identities=26% Similarity=0.242 Sum_probs=34.9
Q ss_pred ccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 449 FGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 449 ~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
..+.+|...||.++.+.+|+.+.|.|++|+||||++..++-.
T Consensus 139 ~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 139 HVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp SBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 445567888999955999999999999999999997665554
No 211
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.12 E-value=0.059 Score=56.87 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=38.4
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~ 508 (709)
...|..+.|.|+||+||||++..++...... |.+|.+++.+...
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~-~~~v~v~~~d~~~ 96 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE-GLKVAVIAVDPSS 96 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCC-
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEEeecCCc
Confidence 6778899999999999999999999888765 8999999988654
No 212
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.12 E-value=0.032 Score=53.82 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=23.4
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
..+|++++|.|++|+||||++..++...
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 5679999999999999999999887654
No 213
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.12 E-value=0.25 Score=55.50 Aligned_cols=54 Identities=13% Similarity=-0.002 Sum_probs=37.7
Q ss_pred CcEEEEEccCCCChHHHHHHHHH---HHHHhcCCeEEEEECCCC----HHHHHHHHHHHHc
Q 005200 467 GELTIVTGVPNSGKSEWIDALIC---NINEHAGWKFVLCSMENK----VREHARKLLEKHI 520 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~---~~a~~~g~~Vly~SlE~~----~~~~~~Rl~~~~~ 520 (709)
..++.|.|.+|+|||++|.+++. .-...+-..++|++.... ...+...++..+.
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~ 212 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLK 212 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHh
Confidence 36999999999999999998875 122222356888887653 5566666665543
No 214
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.11 E-value=0.045 Score=56.07 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=33.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
++.|.|..|+||||++.++|..++.. |.+|+.+.++..
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~-G~rVlliD~D~q 41 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEM-GKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEEECSS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 34557999999999999999999987 999999999854
No 215
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=94.09 E-value=0.33 Score=48.71 Aligned_cols=131 Identities=14% Similarity=0.105 Sum_probs=73.3
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE-----C--CCCHHHHHHHHHHHHcCCCcc-c-cccCCCCCCCCH
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS-----M--ENKVREHARKLLEKHIKKPFF-E-ANYGGSAERMTV 538 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S-----l--E~~~~~~~~Rl~~~~~g~~~~-~-i~~g~~~~~l~~ 538 (709)
.+++-+-.+|+|||++++.|+..+.++ |.+|.||- . +....+.+ ...++.+.. . +.. ...+++
T Consensus 28 ~i~Itgt~t~vGKT~vt~gL~~~l~~~-G~~V~~fKPv~~g~~~~~~D~~~~----~~~~g~~~~~~~~~~---~~p~sP 99 (251)
T 3fgn_A 28 ILVVTGTGTGVGKTVVCAALASAARQA-GIDVAVCKPVQTGTARGDDDLAEV----GRLAGVTQLAGLARY---PQPMAP 99 (251)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHT-TCCEEEEEEEECCGGGTCCHHHHH----HHHHCCCEEEEEEEC---SSSSCH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHC-CCeEEEEeeeecCCCCCCHHHHHH----HHHcCCCCCCCCeeE---CCCCCh
Confidence 366667778999999999999998887 99999995 2 11222222 333454311 0 100 011222
Q ss_pred HHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 005200 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQ 618 (709)
Q Consensus 539 e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~ 618 (709)
.... .+.. ......+.|.+.++++ ..+.|+||||.-..+...... .. .....+|+
T Consensus 100 ~~aa----~~~~---------~~~~~~~~i~~~~~~l--~~~~D~vlIEGagGl~~pl~~-~~---------~~~adla~ 154 (251)
T 3fgn_A 100 AAAA----EHAG---------MALPARDQIVRLIADL--DRPGRLTLVEGAGGLLVELAE-PG---------VTLRDVAV 154 (251)
T ss_dssp HHHH----HHTT---------CCCCCHHHHHHHHHTT--CCTTCEEEEECSSSTTCEEET-TT---------EEHHHHHH
T ss_pred HHHH----HHcC---------CCCCCHHHHHHHHHHH--HhcCCEEEEECCCCCcCCcCc-cc---------chHHHHHH
Confidence 1111 1111 1123456666555543 346899999977666532100 00 01234778
Q ss_pred HhCcEEEEEeccC
Q 005200 619 HHACHVWFVAHPR 631 (709)
Q Consensus 619 ~~~i~Vi~v~h~r 631 (709)
.++.+||+|+..+
T Consensus 155 ~l~~pVILV~~~~ 167 (251)
T 3fgn_A 155 DVAAAALVVVTAD 167 (251)
T ss_dssp HTTCEEEEEECSS
T ss_pred HcCCCEEEEEcCC
Confidence 8899999999854
No 216
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=94.08 E-value=0.044 Score=56.34 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=33.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
+.+..+.+|+||||++.++|..+|.. |.+|+.+.+++.
T Consensus 95 I~vts~kgG~GKTtva~nLA~~lA~~-G~rVLLID~D~~ 132 (286)
T 3la6_A 95 LMMTGVSPSIGMTFVCANLAAVISQT-NKRVLLIDCDMR 132 (286)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHHTT-TCCEEEEECCTT
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhC-CCCEEEEeccCC
Confidence 55556679999999999999999987 999999999975
No 217
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.08 E-value=0.029 Score=54.36 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=24.9
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
+.+|.+++|.|+||+||||++..|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 6789999999999999999998887654
No 218
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.07 E-value=0.041 Score=55.63 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=33.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
++.|.|..|+||||++.++|..++.. |.+|+.+.++..
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~-G~~VlliD~D~q 40 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAM-GKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEEECTT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHC-CCcEEEEcCCCC
Confidence 34557999999999999999999976 999999999853
No 219
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.06 E-value=0.028 Score=54.61 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=26.6
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
|...++ +++..-++|+||||+|||+++..++..+
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 334444 6666689999999999999998887754
No 220
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=94.05 E-value=0.045 Score=58.52 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=32.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
+.+..|..|+||||++.++|..+|.. |.+|+++.++
T Consensus 146 Iav~s~KGGvGKTT~a~nLA~~La~~-g~rVlliD~D 181 (373)
T 3fkq_A 146 VIFTSPCGGVGTSTVAAACAIAHANM-GKKVFYLNIE 181 (373)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHH-TCCEEEEECC
T ss_pred EEEECCCCCChHHHHHHHHHHHHHhC-CCCEEEEECC
Confidence 45555699999999999999999997 9999999999
No 221
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.99 E-value=0.032 Score=57.92 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=29.9
Q ss_pred hhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 456 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 456 ~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
+.|+.+.- +++|+.+.|.|++|+|||||+.-|+--.
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34555544 9999999999999999999998877655
No 222
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.98 E-value=0.06 Score=52.12 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=31.4
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
.+|-+++|.|++|+||||++..|+..+-.. +..|..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v~~~~ 44 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAA-GHRAELLR 44 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEee
Confidence 357799999999999999999999887665 78875443
No 223
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.90 E-value=0.046 Score=54.25 Aligned_cols=39 Identities=8% Similarity=0.103 Sum_probs=33.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
+.+..+..|+||||++.++|..++...|.+|+++.++..
T Consensus 7 I~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 7 FGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred EEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 455667799999999999999999755999999999864
No 224
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.89 E-value=0.039 Score=52.47 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=23.3
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
..+.+++|.|+||+||||++..++..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457799999999999999999887654
No 225
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.87 E-value=0.026 Score=56.12 Aligned_cols=36 Identities=19% Similarity=0.105 Sum_probs=32.9
Q ss_pred EEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 471 IVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 471 ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
.|.|..|+||||++.++|..++.. |.+|+.+.++..
T Consensus 4 ~vs~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 39 (254)
T 3kjh_A 4 AVAGKGGVGKTTVAAGLIKIMASD-YDKIYAVDGDPD 39 (254)
T ss_dssp EEECSSSHHHHHHHHHHHHHHTTT-CSCEEEEEECTT
T ss_pred EEecCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 348999999999999999999987 999999999874
No 226
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.85 E-value=0.031 Score=54.28 Aligned_cols=37 Identities=30% Similarity=0.561 Sum_probs=27.7
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHH-----HhcC-CeEEEEECC
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNIN-----EHAG-WKFVLCSME 505 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a-----~~~g-~~Vly~SlE 505 (709)
-+++++|+||+|||+++..++...+ .. | .+|.|..++
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~-g~r~v~~~~~~ 48 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDEN-GIRRKVFTNIK 48 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTT-SCCCCEEECCT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhccccc-CceEEEEecCC
Confidence 4899999999999999998877664 33 6 555455444
No 227
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.83 E-value=0.048 Score=53.15 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=33.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
+.+..+..|+||||++.++|..++.. | +|+.+.++..
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~-g-~VlliD~D~q 39 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQ-G-ETLLIDGDPN 39 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTT-S-CEEEEEECTT
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhc-C-CEEEEECCCC
Confidence 56678999999999999999999987 9 9999998865
No 228
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.83 E-value=0.096 Score=57.68 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=54.1
Q ss_pred CcccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHh-------cCCeEEEEECCCCHHHHH
Q 005200 447 DEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEH-------AGWKFVLCSMENKVREHA 512 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~-------~g~~Vly~SlE~~~~~~~ 512 (709)
....+.||+..+|-++-+.+|+=..|.|++|+|||++++++..+.+.. ++..++|+...+..+++.
T Consensus 142 v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~ 214 (510)
T 2ck3_A 142 VREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVA 214 (510)
T ss_dssp CCSBCCCSCHHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHH
T ss_pred cCccccccceeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHH
Confidence 345688999999999999999999999999999999988777777662 355678888888776653
No 229
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.78 E-value=0.23 Score=55.47 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=32.7
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
..++++.|.||+||||++..++..+-.. +..+.+|+.+.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~-~~d~~v~s~D~ 73 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWI-GVPTKVFNVGE 73 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhc-CCCeEEecccH
Confidence 4699999999999999999999887665 77888887653
No 230
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.77 E-value=0.037 Score=51.59 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=25.0
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
+.+|+++.|.|+.|+|||||+.-++-..
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999988776654
No 231
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.77 E-value=0.11 Score=61.20 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=25.1
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNIN 492 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a 492 (709)
.+|++++|.|++|+||||++.+++.-..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 5789999999999999999999987654
No 232
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.76 E-value=0.34 Score=57.14 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=29.2
Q ss_pred ccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 463 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 463 ~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
++.+|+-++|.|+||+|||+++..++.. .+.++++++
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~----l~~~~i~v~ 270 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANE----TGAFFFLIN 270 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHT----TTCEEEEEE
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHH----cCCcEEEEE
Confidence 4788999999999999999998877543 266666655
No 233
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.68 E-value=0.043 Score=51.45 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.8
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.+|++++|.|++|+||||++..++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46889999999999999999887654
No 234
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.65 E-value=0.094 Score=55.15 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.5
Q ss_pred EEEEccCCCChHHHHHHHHHHHH
Q 005200 470 TIVTGVPNSGKSEWIDALICNIN 492 (709)
Q Consensus 470 ~ii~G~pG~GKT~~a~qla~~~a 492 (709)
++|.|++|+||||++..++..+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999998887654
No 235
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.59 E-value=0.031 Score=53.99 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=21.3
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.+|++++|.|++|+||||++..++-..
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998876543
No 236
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.56 E-value=0.08 Score=65.81 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=26.0
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
.|+++-- +++|+.+.|.|++|+||||++.-++
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~ 1080 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE 1080 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHT
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3555433 9999999999999999999977554
No 237
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=93.53 E-value=0.43 Score=52.23 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=41.5
Q ss_pred cCCCcEEEEEccCCCChHH-HHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCC
Q 005200 464 VLPGELTIVTGVPNSGKSE-WIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 523 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~-~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~ 523 (709)
+..++++++.|++|+|||. ++..++.++... |..++|++. -..++..+.....|..
T Consensus 16 l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-~~~~lvl~P---tr~La~Q~~~~l~g~~ 72 (451)
T 2jlq_A 16 FRKKRLTIMDLHPGAGKTKRILPSIVREALLR-RLRTLILAP---TRVVAAEMEEALRGLP 72 (451)
T ss_dssp GSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-TCCEEEEES---SHHHHHHHHHHTTTSC
T ss_pred HhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-CCcEEEECC---CHHHHHHHHHHhcCce
Confidence 5567899999999999999 688777776665 889999983 3456656555554543
No 238
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.50 E-value=0.084 Score=61.37 Aligned_cols=140 Identities=15% Similarity=0.111 Sum_probs=75.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHHHHHc--CCCccccccCCCCCCCCHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHI--KKPFFEANYGGSAERMTVEE 540 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~-~~~~~~Rl~~~~~--g~~~~~i~~g~~~~~l~~e~ 540 (709)
+..|+-+++.|++|+|||+.+...+++...+ |.+++|+..--. ..+...++ .... |+..... .|+.. ..+
T Consensus 37 i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~l~i~P~r~La~q~~~~~-~~~~~~g~~v~~~-~G~~~--~~~-- 109 (702)
T 2p6r_A 37 VFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-GGKSLYVVPLRALAGEKYESF-KKWEKIGLRIGIS-TGDYE--SRD-- 109 (702)
T ss_dssp HTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHH-TTTTTTTCCEEEE-CSSCB--CCS--
T ss_pred HhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-CCcEEEEeCcHHHHHHHHHHH-HHHHhcCCEEEEE-eCCCC--cch--
Confidence 5568899999999999999998888877665 889999985421 33344443 1111 2222111 12100 000
Q ss_pred HHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHH-hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005200 541 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL-RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 619 (709)
Q Consensus 541 ~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~-~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~ 619 (709)
..+...-+++ .|.+.+...++.-.. -.++++||||-...+.. ..+...+..++..++.+.
T Consensus 110 -----~~~~~~~Iiv-------~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~-----~~r~~~~~~ll~~l~~~~-- 170 (702)
T 2p6r_A 110 -----EHLGDCDIIV-------TTSEKADSLIRNRASWIKAVSCLVVDEIHLLDS-----EKRGATLEILVTKMRRMN-- 170 (702)
T ss_dssp -----SCSTTCSEEE-------EEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGC-----TTTHHHHHHHHHHHHHHC--
T ss_pred -----hhccCCCEEE-------ECHHHHHHHHHcChhHHhhcCEEEEeeeeecCC-----CCcccHHHHHHHHHHhcC--
Confidence 0111222232 234444443332111 23588999997665532 123344556666666432
Q ss_pred hCcEEEEEec
Q 005200 620 HACHVWFVAH 629 (709)
Q Consensus 620 ~~i~Vi~v~h 629 (709)
.++.+|+++-
T Consensus 171 ~~~~ii~lSA 180 (702)
T 2p6r_A 171 KALRVIGLSA 180 (702)
T ss_dssp TTCEEEEEEC
T ss_pred cCceEEEECC
Confidence 3577777766
No 239
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.49 E-value=0.082 Score=51.04 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=31.6
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
..+|.+++|.|++|+||||++..|+..+-.. +..+..+.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~ 45 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEVKHLY 45 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEe
Confidence 3457799999999999999999999887655 77775444
No 240
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.46 E-value=0.27 Score=57.29 Aligned_cols=139 Identities=15% Similarity=0.123 Sum_probs=76.2
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC-CHHHHHHHHHH-HHcCCCccccccCCCCCCCCHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARKLLE-KHIKKPFFEANYGGSAERMTVEEF 541 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~-~~~~~~~Rl~~-~~~g~~~~~i~~g~~~~~l~~e~~ 541 (709)
+..|+-+++.|++|+|||+.+...+++.....|.+++|+..-- -..+...++.. ...|+....+ .|. .....
T Consensus 36 ~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~-~G~--~~~~~--- 109 (720)
T 2zj8_A 36 ILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMA-TGD--YDSKD--- 109 (720)
T ss_dssp GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEE-CSC--SSCCC---
T ss_pred hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEe-cCC--CCccc---
Confidence 4558899999999999999887766665553489999998643 35566666521 1123333222 121 01111
Q ss_pred HHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHH-hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 005200 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL-RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHH 620 (709)
Q Consensus 542 ~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~-~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~ 620 (709)
.++....+++ .|.+.+...++.-.. -.++++||||-...+.. ..+...+..++..++.
T Consensus 110 ----~~~~~~~Iiv-------~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~-----~~r~~~~~~ll~~l~~----- 168 (720)
T 2zj8_A 110 ----EWLGKYDIII-------ATAEKFDSLLRHGSSWIKDVKILVADEIHLIGS-----RDRGATLEVILAHMLG----- 168 (720)
T ss_dssp ----GGGGGCSEEE-------ECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC-----TTTHHHHHHHHHHHBT-----
T ss_pred ----cccCCCCEEE-------ECHHHHHHHHHcChhhhhcCCEEEEECCcccCC-----CcccHHHHHHHHHhhc-----
Confidence 1122333333 244555444333111 13578999997665532 1233344455555541
Q ss_pred CcEEEEEec
Q 005200 621 ACHVWFVAH 629 (709)
Q Consensus 621 ~i~Vi~v~h 629 (709)
++.+|+++-
T Consensus 169 ~~~ii~lSA 177 (720)
T 2zj8_A 169 KAQIIGLSA 177 (720)
T ss_dssp TBEEEEEEC
T ss_pred CCeEEEEcC
Confidence 677777765
No 241
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.41 E-value=0.066 Score=55.00 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=33.9
Q ss_pred CcEEEEE---ccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 467 GELTIVT---GVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 467 G~L~ii~---G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
+..++|+ +..|+||||++.++|..++.. |.+|+.+.++..
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~-G~rVlliD~D~q 76 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKL-NLKVLMIDKDLQ 76 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHT-TCCEEEEEECTT
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhC-CCeEEEEeCCCC
Confidence 3455555 499999999999999999986 999999999865
No 242
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.40 E-value=0.076 Score=50.37 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=28.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
+++|.|.+|+||||++..++..+... |.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~-g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQK-GYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 68999999999999999998877554 88876553
No 243
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=93.37 E-value=0.074 Score=51.98 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=29.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
+.+..+.+|+||||++.++|..++++ |.+|+++.
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~-G~rVll~d 37 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAA-GYRTAGYK 37 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEc
Confidence 45556679999999999999999987 99999974
No 244
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.37 E-value=0.084 Score=55.89 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=34.7
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCH
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~ 508 (709)
.+..+.|.|+||+|||||+..++-..... +.+|.+++.+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~-~~~v~V~~~dp~~ 114 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTER-GHKLSVLAVDPSS 114 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEECCC--
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhc-CCeEEEEeecCCC
Confidence 36799999999999999999998876655 8899999887654
No 245
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.37 E-value=0.055 Score=52.16 Aligned_cols=35 Identities=29% Similarity=0.246 Sum_probs=27.7
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEE
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC 502 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~ 502 (709)
+|-+++|.|+||+||||++..|+..+-.. | .|+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~-g-~~~~~ 37 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELK-R-DVYLT 37 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTT-S-CEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhc-C-CEEEe
Confidence 46789999999999999999998876443 5 56443
No 246
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.36 E-value=0.042 Score=54.90 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=29.9
Q ss_pred hhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHh----cCCeEEEEECC
Q 005200 456 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEH----AGWKFVLCSME 505 (709)
Q Consensus 456 ~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~----~g~~Vly~SlE 505 (709)
..|+.+-- +.+|+++.|.|++|+||||++..++-.+-.- ....+.|++.+
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d 67 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQD 67 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGG
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCC
Confidence 34565544 8999999999999999999998776644100 01346677654
No 247
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.35 E-value=0.075 Score=50.63 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=27.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
+++|.|++|+||||++..++..+... |.+|+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~-g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR-GKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC-CC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEee
Confidence 68999999999999999998877654 88886543
No 248
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.34 E-value=0.044 Score=51.88 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.+|.+++|.|+||+||||++..++..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35779999999999999999988764
No 249
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.33 E-value=0.059 Score=49.94 Aligned_cols=27 Identities=41% Similarity=0.742 Sum_probs=21.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEE
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFV 500 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vl 500 (709)
+++|.|+||+||||++..+ ...|.+++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-----~~~g~~~i 29 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-----KERGAKVI 29 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-----HHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHH-----HHCCCcEE
Confidence 7899999999999999887 22377754
No 250
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.29 E-value=0.045 Score=55.32 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=33.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCH
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~ 508 (709)
+.+..+..|+||||++.++|..++ + |.+|+++.++...
T Consensus 30 I~v~s~kGGvGKTT~a~~LA~~la-~-g~~VlliD~D~~~ 67 (267)
T 3k9g_A 30 ITIASIKGGVGKSTSAIILATLLS-K-NNKVLLIDMDTQA 67 (267)
T ss_dssp EEECCSSSSSCHHHHHHHHHHHHT-T-TSCEEEEEECTTC
T ss_pred EEEEeCCCCchHHHHHHHHHHHHH-C-CCCEEEEECCCCC
Confidence 555578899999999999999999 6 9999999999653
No 251
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.29 E-value=0.062 Score=55.80 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=32.1
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHH-hcCCeEEEEECCC
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINE-HAGWKFVLCSMEN 506 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~-~~g~~Vly~SlE~ 506 (709)
.+|+++.|.|++|+||||++.-++..+.. ..+..|.+++++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 78999999999999999999877655431 1256688877663
No 252
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=93.21 E-value=0.046 Score=55.03 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=33.5
Q ss_pred cEEEE-EccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 468 ELTIV-TGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 468 ~L~ii-~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
.++.| .+..|+||||++.++|..++.. |.+|+++.++..
T Consensus 7 ~vI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 46 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLARL-GKRVLLVDLDPQ 46 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHT-TCCEEEEECCTT
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence 34444 5788999999999999999987 999999999864
No 253
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.20 E-value=0.044 Score=51.16 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=21.4
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHH
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|.+++|.|+||+||||++..++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999998877654
No 254
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.19 E-value=0.055 Score=55.62 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=28.0
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
...+.+++|+|+||+||||++..++... +..+.++|.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~----~~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET----QGNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT----TTCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh----CCCeEEEec
Confidence 3456799999999999999999886543 234566665
No 255
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.19 E-value=0.05 Score=52.66 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=28.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
+.+|.++.|+|+||+||||++..++... ..+.+++.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~-----~~~~~i~~D 54 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL-----PNCSVISQD 54 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS-----TTEEEEEGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc-----CCcEEEeCC
Confidence 7789999999999999999987665421 146677765
No 256
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.18 E-value=0.045 Score=51.28 Aligned_cols=32 Identities=28% Similarity=0.522 Sum_probs=24.4
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
.+++|.|+||+||||++..++.. .....+++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~-----~~~~~~i~~ 34 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK-----NPGFYNINR 34 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH-----STTEEEECH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh-----cCCcEEecH
Confidence 47899999999999999887762 233556664
No 257
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.18 E-value=0.053 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=20.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHH
Q 005200 469 LTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
+++|.|+||+||||++..|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999998877653
No 258
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.15 E-value=0.032 Score=55.18 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=19.2
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
+.+|+++.|.|++|+||||++..++
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 7889999999999999999988776
No 259
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.11 E-value=0.052 Score=52.50 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.6
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
-+|.+++|.|++|+||||++..|+..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 36899999999999999998877653
No 260
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.06 E-value=0.19 Score=59.79 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=29.3
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhc------CCeEEEEEC
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHA------GWKFVLCSM 504 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~------g~~Vly~Sl 504 (709)
.-++|.|+||+|||+++..++..+.... +.+++++++
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 3578999999999999999999886631 567776654
No 261
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.06 E-value=0.037 Score=55.22 Aligned_cols=32 Identities=34% Similarity=0.487 Sum_probs=26.2
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++
T Consensus 20 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3555444 9999999999999999999987654
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.04 E-value=0.042 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.396 Sum_probs=20.8
Q ss_pred CcEEEEEccCCCChHHHHHHHHH
Q 005200 467 GELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|++++|.|++|+||||++..++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67999999999999999998864
No 263
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.04 E-value=0.098 Score=55.50 Aligned_cols=42 Identities=29% Similarity=0.428 Sum_probs=31.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
..+|++++|.|++|+||||++.-++-.+....+..++ +.|.+
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~--t~ed~ 161 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHIL--TIEDP 161 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEE--EEESS
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEE--EccCc
Confidence 5678899999999999999998887766554355554 34544
No 264
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.00 E-value=0.078 Score=58.31 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=53.3
Q ss_pred CCcccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHH
Q 005200 446 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 512 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~ 512 (709)
.....+.||+..+|-++-+.+|+=..|.|++|+|||++++++..+.+. ++..++|+...+..+++.
T Consensus 154 ~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~-~dv~~V~~~IGeR~~Ev~ 219 (515)
T 2r9v_A 154 PVDTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG-QGVYCIYVAIGQKKSAIA 219 (515)
T ss_dssp CCCSEECCSCHHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTT-TTEEEEEEEESCCHHHHH
T ss_pred CCCcchhcCccccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhc-CCcEEEEEEcCCCcHHHH
Confidence 344678899999999999999999999999999999998876666553 255667888888776653
No 265
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=93.00 E-value=0.073 Score=54.51 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=33.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
+.+..+..|+||||++.++|..++.. |.+|+.+.++.
T Consensus 7 I~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~ 43 (286)
T 2xj4_A 7 IVVGNEKGGAGKSTIAVHLVTALLYG-GAKVAVIDLDL 43 (286)
T ss_dssp EEECCSSSCTTHHHHHHHHHHHHHHT-TCCEEEEECCT
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCC
Confidence 45556889999999999999999987 99999999997
No 266
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.84 E-value=0.11 Score=55.54 Aligned_cols=39 Identities=31% Similarity=0.356 Sum_probs=31.3
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEE
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC 502 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~ 502 (709)
+.+|++++|.|++|+||||++..++-.+.......|+++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 171 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEe
Confidence 789999999999999999999988876654314566554
No 267
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.80 E-value=0.084 Score=58.02 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=53.1
Q ss_pred CCcccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHH
Q 005200 446 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 512 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~ 512 (709)
.....+.||+..+|-++-+.+|+=..|.|++|+|||++++++..+.+. ++..++|+...+..+++.
T Consensus 141 ~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~-~dv~~V~~~iGeR~~Ev~ 206 (502)
T 2qe7_A 141 SVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG-QDVICIYVAIGQKQSTVA 206 (502)
T ss_dssp CCCSBCCCSCHHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS-CSEEEEEEEESCCHHHHH
T ss_pred CCCCccccceeecccccccccCCEEEEECCCCCCchHHHHHHHHHhhc-CCcEEEEEECCCcchHHH
Confidence 344678899999999999999999999999999999998876666653 355667888887766543
No 268
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.80 E-value=0.058 Score=52.28 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=27.4
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
.+|+++.|.|++|+||||++..++-.. +..+.|++.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~----~~~i~~v~~d 40 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL----GERVALLPMD 40 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH----GGGEEEEEGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh----CCCeEEEecC
Confidence 478999999999999999988766543 1136666644
No 269
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.70 E-value=0.052 Score=55.23 Aligned_cols=33 Identities=36% Similarity=0.422 Sum_probs=26.6
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.|+++-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 35 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3555544 99999999999999999999875543
No 270
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.70 E-value=0.064 Score=51.48 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=29.1
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
.+|-+++|.|++|+||||++..++..+ . |.+++.+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l--~-g~~~~~~~~ 38 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI--P-ANTIKYLNF 38 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS--C-GGGEEEEES
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH--C-CCceEEEec
Confidence 357799999999999999999887755 2 677766553
No 271
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.67 E-value=0.72 Score=51.01 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=28.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
..+..-++|.|+||+|||++|..++.. .+.++++++.
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~----~~~~fv~vn~ 271 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANE----TGAFFFLING 271 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHH----CSSEEEEEEH
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHH----hCCCEEEEEc
Confidence 344556899999999999998877543 3788888773
No 272
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.65 E-value=0.066 Score=53.88 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHH
Q 005200 469 LTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
+++|.|+||+||||++..|+...
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 78999999999999999887653
No 273
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.65 E-value=0.043 Score=54.94 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=26.2
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005200 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 555434 99999999999999999999876553
No 274
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.64 E-value=0.085 Score=58.03 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=53.7
Q ss_pred CcccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHH
Q 005200 447 DEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 512 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~ 512 (709)
....+.||+..+|-++-+.+|+=..|.|++|+|||++++++..+.+. ++..++|+...+..+++.
T Consensus 143 v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~-~dv~~V~~~iGeR~~Ev~ 207 (507)
T 1fx0_A 143 VYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQG-QNVICVYVAIGQKASSVA 207 (507)
T ss_dssp CCSBCCCSCTTTTTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCT-TTCEEEEEEESCCHHHHH
T ss_pred cCCcccccceecccccccccCCEEEEecCCCCCccHHHHHHHHHhhc-CCcEEEEEEcCCCchHHH
Confidence 34578899999999999999999999999999999998876666654 366778888888777653
No 275
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.62 E-value=0.049 Score=54.84 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=26.4
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.|+++-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3555433 99999999999999999999776543
No 276
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.57 E-value=0.1 Score=57.32 Aligned_cols=65 Identities=18% Similarity=0.335 Sum_probs=52.6
Q ss_pred CCcccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHH
Q 005200 446 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~ 511 (709)
.....+.||+..+|-++-+.+|+=..|.|++|+|||+++++...+... .+..++|+...+..+++
T Consensus 141 ~v~epl~TGikaID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~-~dv~~V~~~IGeR~~ev 205 (513)
T 3oaa_A 141 SVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRD-SGIKCIYVAIGQKASTI 205 (513)
T ss_dssp CCCCBCCCSCHHHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTSS-SSCEEEEEEESCCHHHH
T ss_pred CcCcccccceeeeccccccccCCEEEeecCCCCCcchHHHHHHHhhcc-CCceEEEEEecCChHHH
Confidence 344678899999999999999999999999999999998776665432 35667788888876654
No 277
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.56 E-value=0.042 Score=53.72 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=24.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+.+|+++.|.|++|+|||||+.-++--
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999998877765
No 278
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.54 E-value=0.14 Score=50.54 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=34.3
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHH-hcCCeEEEEECC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINE-HAGWKFVLCSME 505 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~-~~g~~Vly~SlE 505 (709)
-.+|-+++|.|.+|+||||.+..++..+.. . |.+|.+++-|
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~-g~~v~~~tre 59 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIY-GVNNVVLTRE 59 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CGGGEEEEES
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcc-CceeeEeeeC
Confidence 346889999999999999999999988877 6 8888875545
No 279
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.51 E-value=0.079 Score=49.89 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=22.8
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
..+.+++|.|+||+||||++..++..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999887654
No 280
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.50 E-value=0.044 Score=54.37 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=26.7
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 23 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3555544 99999999999999999999876543
No 281
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.50 E-value=0.076 Score=50.33 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.0
Q ss_pred CcEEEEEccCCCChHHHHHHHHHH
Q 005200 467 GELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+.+++|.|+||+||||++..++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999887764
No 282
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=92.44 E-value=0.058 Score=57.42 Aligned_cols=38 Identities=8% Similarity=0.167 Sum_probs=34.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
+++..+..|+||||++.++|..+|.. |.+|+++.++..
T Consensus 4 Iav~s~KGGvGKTT~a~nLA~~LA~~-G~rVLlID~D~q 41 (361)
T 3pg5_A 4 ISFFNNKGGVGKTTLSTNVAHYFALQ-GKRVLYVDCDPQ 41 (361)
T ss_dssp EEBCCSSCCHHHHHHHHHHHHHHHHT-TCCEEEEECCTT
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEcCCC
Confidence 45666899999999999999999986 999999999965
No 283
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.44 E-value=0.05 Score=55.47 Aligned_cols=45 Identities=9% Similarity=0.090 Sum_probs=32.3
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005200 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
-.+++++++|- +.++.+ ......+++.|++++++.+.+||+++|.
T Consensus 172 ~~~p~lllLDE-------Pts~LD-~~~~~~i~~~l~~~~~~~g~tviivtHd 216 (271)
T 2ixe_A 172 IRKPRLLILDN-------ATSALD-AGNQLRVQRLLYESPEWASRTVLLITQQ 216 (271)
T ss_dssp TTCCSEEEEES-------TTTTCC-HHHHHHHHHHHHHCTTTTTSEEEEECSC
T ss_pred hcCCCEEEEEC-------CccCCC-HHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 46799999992 222333 3344567888888877779999999994
No 284
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.39 E-value=0.086 Score=50.16 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=22.9
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.++.+++|.|+||+||||++..++...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999998887643
No 285
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.37 E-value=0.087 Score=49.76 Aligned_cols=25 Identities=16% Similarity=0.021 Sum_probs=21.6
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHH
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
+..++|.|+||+||||++..++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999887654
No 286
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.37 E-value=0.097 Score=53.89 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=29.1
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
+-++.|+|++|+||||++..++..+-.. |..+.+++++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~-~~~~~vI~~D~ 43 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRRE-GVKAVSIEGDA 43 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHH-TCCEEEEEGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhc-CCCeeEeecch
Confidence 3489999999999999999988766544 77788888763
No 287
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.33 E-value=0.091 Score=54.08 Aligned_cols=40 Identities=20% Similarity=0.039 Sum_probs=30.6
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcC--CeEEEE-ECC
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAG--WKFVLC-SME 505 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g--~~Vly~-SlE 505 (709)
.++.++.|+|++|+||||++..++..+... | .+++.+ +.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~~~~~~~iv~~D 71 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YGGEKSIGYASID 71 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HGGGSCEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CCCCceEEEeccc
Confidence 457799999999999999999888777643 3 344444 777
No 288
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.32 E-value=0.064 Score=53.90 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=29.0
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
...+.+++|.|+||+||||++..++... +..+.+++.+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l----~~~~~~~~~D 66 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEF----QGNIVIIDGD 66 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHT----TTCCEEECGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhc----CCCcEEEecH
Confidence 5567899999999999999998887643 3445566654
No 289
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.30 E-value=0.054 Score=54.87 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=26.8
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3555434 99999999999999999999876654
No 290
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.22 E-value=0.19 Score=50.08 Aligned_cols=54 Identities=19% Similarity=0.288 Sum_probs=36.8
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 518 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~ 518 (709)
-.+|.+++|.|++|+||||.+..++..+... |.++..+.-|-....+...+-..
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~rep~~t~~g~~ir~~ 77 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTREPGGTLLAEKLRAL 77 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeecCCCCCHHHHHHHHH
Confidence 3468899999999999999999999888766 88833333343333344444333
No 291
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.19 E-value=0.23 Score=49.07 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=38.7
Q ss_pred hhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCC----eEEEEECCC-CHHHHHHHH
Q 005200 459 NELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGW----KFVLCSMEN-KVREHARKL 515 (709)
Q Consensus 459 D~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~----~Vly~SlE~-~~~~~~~Rl 515 (709)
..++. +..|+.+++.|++|+|||+++..++.......+. .+++..... ...++..++
T Consensus 67 ~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~ 129 (235)
T 3llm_A 67 SEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERV 129 (235)
T ss_dssp HHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHH
Confidence 44555 7789999999999999998887777766544343 677665542 233444444
No 292
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.19 E-value=0.051 Score=54.71 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=26.1
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
.|+++-- +.+|+++.|.|++|+|||||+.-++
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4555444 9999999999999999999977554
No 293
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.11 E-value=0.1 Score=49.60 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=22.6
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
..+|..++|+|+||+||||++..++..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 345779999999999999998877664
No 294
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.10 E-value=0.071 Score=50.76 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=21.3
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHH
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
|++++|.|++|+||||++..++-..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5689999999999999988777544
No 295
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.08 E-value=0.099 Score=49.25 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=22.6
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+.+| +++|.|++|+|||+++..+..-
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 7788 9999999999999998866553
No 296
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=92.04 E-value=0.54 Score=45.04 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=31.5
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhc-----CCeEEEEECC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHA-----GWKFVLCSME 505 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~-----g~~Vly~SlE 505 (709)
.|.-+++.+++|+|||..+...+....... +.+++|+..-
T Consensus 47 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~ 91 (216)
T 3b6e_A 47 EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNK 91 (216)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESS
T ss_pred cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECH
Confidence 466789999999999999988888766431 5688888753
No 297
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.99 E-value=0.11 Score=49.06 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=22.7
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeE
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKF 499 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~V 499 (709)
.+++|.|+||+||||++..|+..+ |.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l----g~~~ 30 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL----GVGL 30 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH----TCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc----CCCE
Confidence 468999999999999998887653 6654
No 298
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.97 E-value=0.41 Score=58.46 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=67.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHHHHHcCC--CccccccCCCCCCCCHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKK--PFFEANYGGSAERMTVEE 540 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~-~~~~~~Rl~~~~~g~--~~~~i~~g~~~~~l~~e~ 540 (709)
+..|.-+++.|++|+|||.+++-.+...+.. |..+++++.--. ..++..++.. +.+. ....+ .| ..+..+
T Consensus 90 il~g~dvlv~ApTGSGKTl~~l~~il~~~~~-~~~~Lil~PtreLa~Q~~~~l~~-l~~~~i~v~~l-~G----g~~~~e 162 (1104)
T 4ddu_A 90 IVQGKSFTMVAPTGVGKTTFGMMTALWLARK-GKKSALVFPTVTLVKQTLERLQK-LADEKVKIFGF-YS----SMKKEE 162 (1104)
T ss_dssp HTTTCCEEECCSTTCCHHHHHHHHHHHHHTT-TCCEEEEESSHHHHHHHHHHHHT-TSCTTSCEEEE-CT----TCCTTH
T ss_pred HHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc-CCeEEEEechHHHHHHHHHHHHH-hhCCCCeEEEE-eC----CCCHHH
Confidence 5567788999999999999887777777654 889999987633 3445555443 2222 22111 22 233323
Q ss_pred HHHHHHHHhcC-c-ceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCccc
Q 005200 541 FEQGKAWLSNT-F-SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL 592 (709)
Q Consensus 541 ~~~~~~~l~~~-~-~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l 592 (709)
..+....+... . +++ .|...+...+.. ....++++||||-...+
T Consensus 163 r~~~~~~l~~g~~~IlV-------~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l 208 (1104)
T 4ddu_A 163 KEKFEKSFEEDDYHILV-------FSTQFVSKNREK-LSQKRFDFVFVDDVDAV 208 (1104)
T ss_dssp HHHHHHHHHTSCCSEEE-------EEHHHHHHSHHH-HHTSCCSEEEESCHHHH
T ss_pred HHHHHHHHhCCCCCEEE-------ECHHHHHHHHHh-hcccCcCEEEEeCCCcc
Confidence 33333444332 3 333 245555554443 34568999999965444
No 299
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=91.93 E-value=0.15 Score=57.75 Aligned_cols=43 Identities=28% Similarity=0.371 Sum_probs=35.9
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
+..+.+++|.|+||+|||+++..++..+... |.+|++.+.-..
T Consensus 201 ~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~-g~~Vl~~ApT~~ 243 (574)
T 3e1s_A 201 LAGHRLVVLTGGPGTGKSTTTKAVADLAESL-GLEVGLCAPTGK 243 (574)
T ss_dssp HTTCSEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEESSHH
T ss_pred HHhCCEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEecCcHH
Confidence 3456799999999999999999988877765 999999876543
No 300
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.93 E-value=0.14 Score=50.10 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=31.4
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
+|-+++|.|++|+||||.+..++..+... |.+|....
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v~~~~ 41 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRER-GIEVQLTR 41 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCccccc
Confidence 57899999999999999999998887665 88886543
No 301
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.87 E-value=0.15 Score=58.42 Aligned_cols=50 Identities=18% Similarity=0.397 Sum_probs=40.4
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHH
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLL 516 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~-~~~~~~Rl~ 516 (709)
+.+++|.|+||+|||+++..++.++....+.+|++++.-.. .+++..|+.
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHH
Confidence 56999999999999999999998887634889999988754 355666654
No 302
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.85 E-value=0.088 Score=50.86 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=21.7
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHH
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|..++|.|+||+|||+++..|+..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999998887654
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.83 E-value=0.1 Score=50.24 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=21.6
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHH
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
..+++|.|++|+||||++..|+..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999998887654
No 304
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.82 E-value=0.17 Score=55.59 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=33.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCC-eEEEEECCCCH
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGW-KFVLCSMENKV 508 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~-~Vly~SlE~~~ 508 (709)
.++|.|+||+|||+++..++..+... |. .|+.+++-..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~-~~~~il~~a~T~~A 86 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIST-GETGIILAAPTHAA 86 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCceEEEecCcHHH
Confidence 99999999999999999999988876 65 78888776543
No 305
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=91.81 E-value=0.48 Score=45.23 Aligned_cols=55 Identities=15% Similarity=0.041 Sum_probs=35.2
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHH-----hcCCeEEEEECCCC-HHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINE-----HAGWKFVLCSMENK-VREHARKLLEK 518 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~-----~~g~~Vly~SlE~~-~~~~~~Rl~~~ 518 (709)
+..|.-+++.+++|+|||..+...+..... ..+.+++|+..-.. ..++.+++...
T Consensus 35 ~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 95 (207)
T 2gxq_A 35 ALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAV 95 (207)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHH
Confidence 445677999999999999876655555432 23667888875422 34455554433
No 306
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.80 E-value=0.19 Score=59.21 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=42.7
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHHH
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLE 517 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~-~~~~~~Rl~~ 517 (709)
.+.+++|.|+||+|||+.+..++.++....+.+|+.++.-.. ++++..|+..
T Consensus 374 ~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 374 QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 356999999999999999999998887644899999998755 4667777754
No 307
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=91.79 E-value=0.64 Score=50.48 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=36.0
Q ss_pred CCcEEEEEccCCCChHHHH-HHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCC
Q 005200 466 PGELTIVTGVPNSGKSEWI-DALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 522 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a-~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~ 522 (709)
+|+.+++.|++|+|||..+ ..++..+..+ |..++|+..- ..++..+.....+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~-g~~~lvl~Pt---~~La~Q~~~~~~~~ 54 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK-RLRTVILAPT---RVVASEMYEALRGE 54 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT-TCCEEEEESS---HHHHHHHHHHTTTS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEECcH---HHHHHHHHHHhCCC
Confidence 3788999999999999876 4444455554 8899999843 44554544444444
No 308
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.77 E-value=0.11 Score=50.63 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.4
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
+|-+++|.|+||+||||++..|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999887653
No 309
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.74 E-value=0.083 Score=49.69 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=20.1
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEE
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 500 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vl 500 (709)
++.+++|.|.||+||||++..++..+ |.+++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l----~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL----PGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS----TTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc----CCCEE
Confidence 35689999999999999988876543 66654
No 310
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.74 E-value=0.1 Score=55.80 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=27.2
Q ss_pred hhhhh-ccCCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 458 LNELY-NVLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll-~l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+. ++++|++++|.|+||+||||++..++..
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34443 3899999999999999999999988753
No 311
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.73 E-value=0.05 Score=52.70 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=27.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
+++|.|++|+||||++..|+..+... |..|.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~-g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA-GRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 78999999999999999988876543 67776553
No 312
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.71 E-value=0.099 Score=56.71 Aligned_cols=43 Identities=26% Similarity=0.312 Sum_probs=31.9
Q ss_pred hhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEE
Q 005200 458 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC 502 (709)
Q Consensus 458 LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~ 502 (709)
|.+++ ..+|++++|.|++|+||||++..++-.+... ...|.++
T Consensus 159 L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~~ 201 (418)
T 1p9r_A 159 FRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILTV 201 (418)
T ss_dssp HHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEEE
T ss_pred HHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEEe
Confidence 44443 4789999999999999999998877655433 4566655
No 313
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.70 E-value=0.11 Score=53.49 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=31.1
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
...++|.|+||+|||++|..++...... +.++.++...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~-~~~~~~~~~~ 84 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRIDMT 84 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSC-GGGEEEEEGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCC-CcceEEeecc
Confidence 3589999999999999999988877654 6678887764
No 314
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.70 E-value=0.17 Score=54.36 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=38.9
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHH
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARK 514 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~R 514 (709)
.+.-++|.|++|+|||+++..++...... |.+|+++..+.....+.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~ 81 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-GSRVIIIDPEREYKEMCRK 81 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEESSCCSHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-CCEEEEEeCCcCHHHHHHH
Confidence 45678999999999999999999888765 8999999887665554443
No 315
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.54 E-value=0.14 Score=50.60 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=29.7
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEE
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly 501 (709)
..+|.+++|.|+||+||||++..++..+.. |..|+.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~ 58 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIM 58 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCcee
Confidence 668999999999999999999988876643 566643
No 316
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=91.46 E-value=0.24 Score=49.94 Aligned_cols=54 Identities=17% Similarity=0.101 Sum_probs=34.9
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHh------cCCeEEEEECCCC-HHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEH------AGWKFVLCSMENK-VREHARKLLE 517 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~------~g~~Vly~SlE~~-~~~~~~Rl~~ 517 (709)
+..|.-+++.|++|+|||..++-.++..... .+..++|+..--. +.++..++..
T Consensus 88 ~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 148 (262)
T 3ly5_A 88 LLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKE 148 (262)
T ss_dssp HHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHH
T ss_pred HhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 4456668999999999997765555544432 3778888875422 3444444443
No 317
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.43 E-value=0.13 Score=49.26 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=24.1
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeE
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKF 499 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~V 499 (709)
.+-+++|.|+||+||||++..|+... |.++
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l----~~~~ 48 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL----GIPQ 48 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH----TCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh----CCcE
Confidence 34589999999999999998887654 5554
No 318
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.40 E-value=0.16 Score=47.11 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=23.6
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEE
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 500 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vl 500 (709)
+.++|.|.+|+||||++..|+..+ |.+++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l----g~~~i 36 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL----KLEVL 36 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH----TCCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh----CCCEE
Confidence 478999999999999988877654 66654
No 319
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.39 E-value=0.13 Score=51.27 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.6
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
++++++|.|++|+||||++..++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999887543
No 320
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.37 E-value=0.094 Score=50.40 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHh
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEH 494 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~ 494 (709)
.++|.|+||+|||+++..++..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 38999999999999999998877543
No 321
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.29 E-value=0.14 Score=53.48 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=29.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHH-hcCCeEEEEECCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINE-HAGWKFVLCSMEN 506 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~-~~g~~Vly~SlE~ 506 (709)
++.|+|++|+||||++..++..+.. ..+..|.+++++.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 8999999999999999876654432 1256788898874
No 322
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.27 E-value=0.13 Score=48.95 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=22.7
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.++.+++|.|+||+||||++..++..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345699999999999999998887654
No 323
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.25 E-value=2.7 Score=47.24 Aligned_cols=144 Identities=10% Similarity=0.020 Sum_probs=71.6
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhc------CCeEEEEECCCC-HHHHHHHHHHHH---cCCC---ccccccCCC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHA------GWKFVLCSMENK-VREHARKLLEKH---IKKP---FFEANYGGS 532 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~------g~~Vly~SlE~~-~~~~~~Rl~~~~---~g~~---~~~i~~g~~ 532 (709)
.|.-+++.+++|+|||...+-.++...... +..+++++.--. ..++..++.... .+.. ...+ .|
T Consensus 59 ~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~-~g-- 135 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSL-VG-- 135 (579)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEE-CT--
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEE-EC--
Confidence 577899999999999976555455444431 247888875422 334444443321 1211 1111 11
Q ss_pred CCCCCHHHHHHHHHHH-h-cCcceEEecCCCCCCHHHHHHHHHHH--HHhcCCcEEEEccCcccccCCCCCCCHHHHHHH
Q 005200 533 AERMTVEEFEQGKAWL-S-NTFSLIRCENDSLPSIKWVLDLAKAA--VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 608 (709)
Q Consensus 533 ~~~l~~e~~~~~~~~l-~-~~~~~i~~~~~~~~~i~~i~~~i~~~--~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~ 608 (709)
... +......+ . ..-+++ .|++.+...+... ..-..+++||||-...+... .-...+..
T Consensus 136 --g~~---~~~~~~~l~~~~~~IlV-------~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~-----gf~~~~~~ 198 (579)
T 3sqw_A 136 --GTD---FRAAMNKMNKLRPNIVI-------ATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEI-----GFRDDLET 198 (579)
T ss_dssp --TSC---HHHHHHHHHHHCCSEEE-------ECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTST-----TTHHHHHH
T ss_pred --Ccc---HHHHHHHHhcCCCCEEE-------ECHHHHHHHHHhccccccccCCEEEEEChHHhhcC-----CCHHHHHH
Confidence 111 11111222 2 122333 3456666655543 12346899999966555421 11223444
Q ss_pred HHHHHHHHHHH--hCcEEEEEec
Q 005200 609 MLTMVKRFAQH--HACHVWFVAH 629 (709)
Q Consensus 609 i~~~Lk~lA~~--~~i~Vi~v~h 629 (709)
+...+...... .++.+++++-
T Consensus 199 i~~~l~~~~~~~~~~~~~l~~SA 221 (579)
T 3sqw_A 199 ISGILNEKNSKSADNIKTLLFSA 221 (579)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEES
T ss_pred HHHHhhhhhcccccCceEEEEec
Confidence 44444433221 1567777776
No 324
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.16 E-value=0.15 Score=63.42 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=26.3
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
.|+++-- +++|+.+.|.|++|+||||++.-++
T Consensus 405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~ 437 (1284)
T 3g5u_A 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ 437 (1284)
T ss_dssp SEEEEEEEECTTCEEEEECCSSSSHHHHHHHTT
T ss_pred ceecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555544 9999999999999999999976543
No 325
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.14 E-value=0.12 Score=53.41 Aligned_cols=31 Identities=32% Similarity=0.523 Sum_probs=26.6
Q ss_pred hhhhhccCCCcEEEEEccCCCChHHHHHHHH
Q 005200 458 LNELYNVLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 458 LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
+|+++.+..|+++.|.|++|+||||++..++
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 4566666679999999999999999999887
No 326
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.14 E-value=0.35 Score=50.30 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=28.7
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
.+++|.|++|+|||+++.+++..+ +.+++|+++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~----~~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL----NLPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH----TCCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc----CCCEEEEEch
Confidence 499999999999999999887664 3458899876
No 327
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.09 E-value=0.18 Score=51.42 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=26.8
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
+++| ++|.|+||+|||+++..++.. .+.+.++++.
T Consensus 43 ~~~G--vlL~Gp~GtGKTtLakala~~----~~~~~i~i~g 77 (274)
T 2x8a_A 43 TPAG--VLLAGPPGCGKTLLAKAVANE----SGLNFISVKG 77 (274)
T ss_dssp CCSE--EEEESSTTSCHHHHHHHHHHH----TTCEEEEEET
T ss_pred CCCe--EEEECCCCCcHHHHHHHHHHH----cCCCEEEEEc
Confidence 5666 999999999999998877653 2556666664
No 328
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.07 E-value=0.12 Score=51.91 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=31.8
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
..+.-++|.|+||+|||++|..++...... +.++++++...
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~-~~~~~~v~~~~ 67 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSSRW-QGPFISLNCAA 67 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTSTTT-TSCEEEEEGGG
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcCcc-CCCeEEEecCC
Confidence 344578899999999999998887665443 67888888654
No 329
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.06 E-value=0.087 Score=54.24 Aligned_cols=31 Identities=23% Similarity=0.451 Sum_probs=25.5
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHH
Q 005200 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++
T Consensus 54 l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHT
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 455433 9999999999999999999977554
No 330
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.04 E-value=0.084 Score=48.07 Aligned_cols=38 Identities=16% Similarity=0.041 Sum_probs=27.8
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
..+.-++|.|+||+|||++|..++...... +.+++ +..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-~~~~v-~~~ 59 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNA-QGEFV-YRE 59 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTT-TSCCE-EEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCcc-CCCEE-EEC
Confidence 445568999999999999998876655443 56655 543
No 331
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.98 E-value=0.12 Score=56.39 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=52.1
Q ss_pred CcccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhc---CCeEEEEECCCCHHHH
Q 005200 447 DEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHA---GWKFVLCSMENKVREH 511 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~---g~~Vly~SlE~~~~~~ 511 (709)
....+.||+..+|-++-+.+|+=..|.|++|+|||+++.++|.+...++ +..++|....+..++.
T Consensus 132 ~~e~l~TGir~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev 199 (469)
T 2c61_A 132 PKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEA 199 (469)
T ss_dssp CCSBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHH
T ss_pred cccccceeeEeeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHH
Confidence 3457889999999999999999999999999999999998888765431 2457777777776654
No 332
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=90.91 E-value=0.45 Score=46.99 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=33.7
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHh---cCCeEEEEECCCC-HHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEH---AGWKFVLCSMENK-VREHARKLLE 517 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~---~g~~Vly~SlE~~-~~~~~~Rl~~ 517 (709)
+..|.-+++.+++|+|||...+-.++..... .|.+++|+..--. ..++..++..
T Consensus 63 ~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 120 (245)
T 3dkp_A 63 MLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIK 120 (245)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 4456668999999999997655444444432 3567888875422 3344444433
No 333
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.82 E-value=0.17 Score=49.10 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.5
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHH
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINE 493 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~ 493 (709)
..++|.|+||+|||+++..++.....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 48999999999999999988876643
No 334
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.81 E-value=0.14 Score=48.80 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHH
Q 005200 469 LTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
+++|.|++|+||||++..|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999887754
No 335
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.80 E-value=0.11 Score=55.75 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=27.2
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.|+++-- +.+|+++.|.|++|+||||++.-++-
T Consensus 36 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 4555544 99999999999999999999876653
No 336
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=90.78 E-value=3 Score=46.50 Aligned_cols=144 Identities=10% Similarity=0.003 Sum_probs=72.7
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcC------CeEEEEECCCC-HHHHHHHHHHHH---cCCC---ccccccCCC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAG------WKFVLCSMENK-VREHARKLLEKH---IKKP---FFEANYGGS 532 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g------~~Vly~SlE~~-~~~~~~Rl~~~~---~g~~---~~~i~~g~~ 532 (709)
.|.-+++.+++|+|||...+-.+++.....+ .+++|++.--. ..++..++.... .+.. ...+ .|
T Consensus 110 ~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~-~g-- 186 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSL-VG-- 186 (563)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEE-CT--
T ss_pred CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEE-EC--
Confidence 5788999999999999765555555444322 37888876432 333444433321 1211 1111 11
Q ss_pred CCCCCHHHHHHHHHHH-hcC-cceEEecCCCCCCHHHHHHHHHHHH--HhcCCcEEEEccCcccccCCCCCCCHHHHHHH
Q 005200 533 AERMTVEEFEQGKAWL-SNT-FSLIRCENDSLPSIKWVLDLAKAAV--LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 608 (709)
Q Consensus 533 ~~~l~~e~~~~~~~~l-~~~-~~~i~~~~~~~~~i~~i~~~i~~~~--~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~ 608 (709)
..+. ......+ ... -+++ .|++.+...+.... .-..+++||||-...+... .-...+..
T Consensus 187 --~~~~---~~~~~~~~~~~~~Iiv-------~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~-----~f~~~~~~ 249 (563)
T 3i5x_A 187 --GTDF---RAAMNKMNKLRPNIVI-------ATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEI-----GFRDDLET 249 (563)
T ss_dssp --TSCH---HHHHHHHHHHCCSEEE-------ECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTST-----TTHHHHHH
T ss_pred --CcCH---HHHHHHHhcCCCCEEE-------ECcHHHHHHHHhccccccccceEEEEeCHHHHhcc-----chHHHHHH
Confidence 1111 1111222 212 2333 34566666555432 2345999999966655431 12233444
Q ss_pred HHHHHHHHHHH--hCcEEEEEec
Q 005200 609 MLTMVKRFAQH--HACHVWFVAH 629 (709)
Q Consensus 609 i~~~Lk~lA~~--~~i~Vi~v~h 629 (709)
++..+...... .++.+++++-
T Consensus 250 i~~~l~~~~~~~~~~~~~l~~SA 272 (563)
T 3i5x_A 250 ISGILNEKNSKSADNIKTLLFSA 272 (563)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEES
T ss_pred HHHhhhhccccCccCceEEEEEc
Confidence 55554443321 2567777776
No 337
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.75 E-value=0.17 Score=49.74 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=27.0
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
+....+++|.|+||+||+|.+..|+... |. .++|.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~----g~--~hIst 60 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF----HF--NHLSS 60 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH----CC--EEECH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH----CC--ceEcH
Confidence 5566799999999999999988877653 44 45664
No 338
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.62 E-value=0.055 Score=56.16 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=26.3
Q ss_pred hhhhhccCCCcEEEEEccCCCChHHHHHHHHH
Q 005200 458 LNELYNVLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
++.++.+.+|+.+.|.|+||+|||||+..|+-
T Consensus 164 ~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 164 LADIIPHFQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp CTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHhcc
Confidence 34455567899999999999999999887754
No 339
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.62 E-value=0.15 Score=50.97 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=28.3
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHh----cCCeEEEEECC
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEH----AGWKFVLCSME 505 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~----~g~~Vly~SlE 505 (709)
-++.|+|++|+||||++..|+..+-.. .+..+++++++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D 64 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD 64 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecC
Confidence 379999999999999999887754221 13457778776
No 340
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.61 E-value=0.16 Score=48.01 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.6
Q ss_pred cEEEEEccCCCChHHHHHHHHHHH
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.+++|.|+||+||||++..++...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999988877643
No 341
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.61 E-value=0.15 Score=47.78 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=19.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHH
Q 005200 469 LTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.++|.|+||+||||++..|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 57899999999999999887643
No 342
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.54 E-value=0.14 Score=55.68 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=50.3
Q ss_pred CcccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHh---cCCeEEEEECCCCHHHH
Q 005200 447 DEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEH---AGWKFVLCSMENKVREH 511 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~---~g~~Vly~SlE~~~~~~ 511 (709)
....+.||+..+|-++-+.+|+=..|.|++|+|||+++.+++.+...+ .+..++|....+..++.
T Consensus 131 ~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev 198 (465)
T 3vr4_D 131 PDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEA 198 (465)
T ss_dssp CCCBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHH
T ss_pred cccccccCceEEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHH
Confidence 345688999999999889999999999999999999998877654331 12267777777776654
No 343
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.54 E-value=0.1 Score=55.48 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=24.7
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
+.+|++++|.|++|+||||++.-++-..
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 8899999999999999999988766543
No 344
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=90.49 E-value=0.19 Score=54.08 Aligned_cols=39 Identities=8% Similarity=0.076 Sum_probs=33.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHH-----hcCCeEEEEECCCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINE-----HAGWKFVLCSMENK 507 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~-----~~g~~Vly~SlE~~ 507 (709)
+.+..|..|+||||++.++|..++. ..|.+|+++.++..
T Consensus 111 Iav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q 154 (398)
T 3ez2_A 111 IFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 154 (398)
T ss_dssp EEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 5566689999999999999999995 34999999999964
No 345
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.41 E-value=0.15 Score=53.45 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=27.2
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
.++.+++|.|++|+|||+++..||.. .+.-++|.+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~------l~~eiIs~D 72 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAH------FPLEVINSD 72 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTT------SCEEEEECC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHH------CCCcEEccc
Confidence 34569999999999999998877753 345567765
No 346
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.39 E-value=0.15 Score=47.39 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=22.6
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeE
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKF 499 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~V 499 (709)
.+++|.|+||+||||++..++..+ |.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l----g~~~ 30 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL----GYEF 30 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH----TCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh----CCcE
Confidence 368999999999999998887654 5554
No 347
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.30 E-value=0.19 Score=48.18 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=25.2
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAG 496 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g 496 (709)
|+.+.|.|++|+||||++.-++-... ..|
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G 29 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG 29 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence 68899999999999999998888776 446
No 348
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.29 E-value=0.15 Score=55.22 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=26.1
Q ss_pred hhhhhc-cCCCcE--EEEEccCCCChHHHHHHHHH
Q 005200 458 LNELYN-VLPGEL--TIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L--~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|++ +.|.|++|+|||||+.-|+-
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 665544 999999 99999999999999887654
No 349
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.23 E-value=0.17 Score=49.37 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=21.9
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.+-+++|.|+||+||||++..|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999887653
No 350
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.23 E-value=0.12 Score=51.90 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=27.6
Q ss_pred hhhhhhc-cCC---CcEEEEEccCCCChHHHHHHHHHHH
Q 005200 457 ALNELYN-VLP---GELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 457 ~LD~ll~-l~~---G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
-|+++-- +.+ |+.++|.|++|+||||++..++..+
T Consensus 34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4555433 666 9999999999999999988877643
No 351
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.21 E-value=0.17 Score=50.85 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.3
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
..+|.++.|.|++|+||||++..++..
T Consensus 24 ~~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 24 TAIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999998877654
No 352
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=90.21 E-value=0.27 Score=57.91 Aligned_cols=50 Identities=18% Similarity=0.397 Sum_probs=39.8
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHH
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLL 516 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~-~~~~~~Rl~ 516 (709)
+.+++|.|+||+|||+++..++..+....+.+|+.++.-.. ++++..|+.
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Confidence 56999999999999999999998887644889999987654 345555553
No 353
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.20 E-value=0.18 Score=49.54 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.0
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHH
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
++.+++|.|+||+||||++..|+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999998887764
No 354
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.17 E-value=0.18 Score=48.93 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=19.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHH
Q 005200 469 LTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.++|.|+||+||||++..|+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998876643
No 355
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.16 E-value=0.41 Score=53.34 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=52.0
Q ss_pred CCcccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHH
Q 005200 446 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHAR 513 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~ 513 (709)
.....+.||+..+|-++-+.+|+=..|.|++|+|||+++.+++.+. +..-++|+...+..++...
T Consensus 211 ~~~epl~TGirvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~---~~~v~V~~~iGER~~Ev~e 275 (600)
T 3vr4_A 211 NPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS---DVDLVVYVGCGERGNEMTD 275 (600)
T ss_dssp CCCSBCCCCCHHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS---SCSEEEEEEEEECHHHHHH
T ss_pred CCCceecccchhhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc---CCCEEEEEEecccHHHHHH
Confidence 3446788999999999999999999999999999999999876652 2445677777777666543
No 356
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.14 E-value=0.15 Score=55.31 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=51.0
Q ss_pred CCcccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHh----------cCCeEEEEECCCCHHHH
Q 005200 446 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEH----------AGWKFVLCSMENKVREH 511 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~----------~g~~Vly~SlE~~~~~~ 511 (709)
.....+.||+..+|-++-+.+|+=..|.|++|+|||+++.+++.+...+ .+..++|....+..++.
T Consensus 126 ~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev 201 (464)
T 3gqb_B 126 KPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQREL 201 (464)
T ss_dssp CCCCBCBCSCHHHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHH
T ss_pred CccccccCcceeeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHH
Confidence 3446788999999999989999999999999999999998877664321 12267777777776654
No 357
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.04 E-value=0.12 Score=52.45 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=26.0
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +. |+++.|.|++|+|||||+.-++--
T Consensus 21 l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC
Confidence 555433 89 999999999999999998876543
No 358
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.00 E-value=0.3 Score=48.20 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=29.3
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhc---CCeEEEEE
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHA---GWKFVLCS 503 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~---g~~Vly~S 503 (709)
..+|-+++|.|++|+||||.+..++..+...+ |.+|....
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 56788999999999999999999988776532 78886544
No 359
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.98 E-value=0.14 Score=53.62 Aligned_cols=30 Identities=37% Similarity=0.444 Sum_probs=25.4
Q ss_pred cCCCcE--EEEEccCCCChHHHHHHHHHHHHH
Q 005200 464 VLPGEL--TIVTGVPNSGKSEWIDALICNINE 493 (709)
Q Consensus 464 l~~G~L--~ii~G~pG~GKT~~a~qla~~~a~ 493 (709)
+..|++ ++|.|+||+|||+++..++..+..
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 556666 999999999999999998887653
No 360
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.94 E-value=0.43 Score=46.63 Aligned_cols=38 Identities=16% Similarity=0.369 Sum_probs=30.6
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCC-eEEEEECC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGW-KFVLCSME 505 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~-~Vly~SlE 505 (709)
+|-+++|.|++|+||||.+..++..+... |. .|. +.-|
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~-~~re 40 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMV-FTRE 40 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEE-EEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcce-eeeC
Confidence 47899999999999999999998887765 77 554 4444
No 361
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.93 E-value=0.28 Score=50.86 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=25.4
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
+.+++|.||||+|||+++..++.. .+..++|.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~------~~~~iis~D 35 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR------LNGEVISGD 35 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT------TTEEEEECC
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh------CccceeecC
Confidence 458999999999999998887653 344566655
No 362
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.88 E-value=0.27 Score=49.59 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=26.9
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
+..-++|.|+||+|||++|..++... +.+++++.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~----~~~~~~i~ 96 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES----NFPFIKIC 96 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH----TCSEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh----CCCEEEEe
Confidence 34578999999999999999887752 67777665
No 363
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=89.88 E-value=0.29 Score=50.07 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=27.8
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
+.-++|.|+||+|||+++..++..+ +.++++++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l----~~~~~~i~~~ 84 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA----NAPFIKVEAT 84 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEEEGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh----CCCEEEEcch
Confidence 4468899999999999999887654 5677777653
No 364
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.83 E-value=0.21 Score=49.72 Aligned_cols=28 Identities=29% Similarity=0.222 Sum_probs=23.2
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
..++-+++|.|+||+||||++..|+...
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3466789999999999999998887543
No 365
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=89.82 E-value=0.59 Score=45.54 Aligned_cols=42 Identities=17% Similarity=0.036 Sum_probs=28.0
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHH--------hcCCeEEEEECC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINE--------HAGWKFVLCSME 505 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~--------~~g~~Vly~SlE 505 (709)
+..|.-+++.+++|+|||...+-.+..... ..+..++|+..-
T Consensus 54 ~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt 103 (228)
T 3iuy_A 54 ILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPT 103 (228)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSS
T ss_pred HhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCC
Confidence 445777899999999999765444443321 136778888743
No 366
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.78 E-value=0.2 Score=48.89 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.0
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
+|-.++|.|+||+||||++..|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999998887754
No 367
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.61 E-value=0.24 Score=48.31 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=20.4
Q ss_pred CcEEEEEccCCCChHHHHHHHHHH
Q 005200 467 GELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+..+.|.|++|+||||++..++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998877654
No 368
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.55 E-value=1.1 Score=44.44 Aligned_cols=55 Identities=15% Similarity=0.037 Sum_probs=35.4
Q ss_pred hhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhc--CCeEEEEECCCC-HHHHHHHH
Q 005200 461 LYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHA--GWKFVLCSMENK-VREHARKL 515 (709)
Q Consensus 461 ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~--g~~Vly~SlE~~-~~~~~~Rl 515 (709)
.+. +..|.-+++.+++|+|||......++...... +.+++|+..--. ..++..++
T Consensus 73 ~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~ 131 (249)
T 3ber_A 73 AIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQF 131 (249)
T ss_dssp HHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHH
Confidence 344 55677899999999999987666666554432 345888874322 33444444
No 369
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.51 E-value=0.22 Score=54.75 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=30.0
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcC-CeEEEEEC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-WKFVLCSM 504 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g-~~Vly~Sl 504 (709)
+.+|+.+.|.|++|+|||||+.-|+--.....| .+| ++..
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI-~vdg 175 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPL-YINL 175 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCE-EEEC
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeE-EEcC
Confidence 889999999999999999998877655444435 334 4443
No 370
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=89.50 E-value=2.1 Score=48.75 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=42.1
Q ss_pred hc-cCCCcEEEEEccCCCChHHH-HHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCC
Q 005200 462 YN-VLPGELTIVTGVPNSGKSEW-IDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 522 (709)
Q Consensus 462 l~-l~~G~L~ii~G~pG~GKT~~-a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~ 522 (709)
+. +..|.-+++.|++|+|||.. ++.++..+... +.+++|++. -.+++..+...+.+.
T Consensus 180 i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-~~~vLvl~P---treLa~Qi~~~l~~~ 238 (618)
T 2whx_A 180 EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-RLRTLILAP---TRVVAAEMEEALRGL 238 (618)
T ss_dssp GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-TCCEEEEES---SHHHHHHHHHHTTTS
T ss_pred HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEcC---hHHHHHHHHHHhcCC
Confidence 44 77899999999999999985 67777776665 788999983 345555555544443
No 371
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.42 E-value=0.23 Score=45.90 Aligned_cols=28 Identities=25% Similarity=0.170 Sum_probs=22.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEE
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFV 500 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vl 500 (709)
.++|.|.||+||||++..++..+ |.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l----~~~~i 29 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL----NIPFY 29 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH----TCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHh----CCCEE
Confidence 57899999999999998877643 55543
No 372
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.37 E-value=0.23 Score=48.34 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=23.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
.++|.|+||+||+|.+..|+... | +.++|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~----g--~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK----G--FVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----C--CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----C--CeEEcHH
Confidence 57889999999999988877643 4 4567754
No 373
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.36 E-value=0.3 Score=47.34 Aligned_cols=37 Identities=22% Similarity=0.119 Sum_probs=30.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
.++|.|.+|+||||++..++..... ..++..++.+..
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~~--~~~~~~i~~d~~ 68 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIGN--EVKIGAMLGDVV 68 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTT--TSCEEEEECSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcc--CCeEEEEecCCC
Confidence 7889999999999999999887643 467888887754
No 374
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.34 E-value=0.23 Score=46.71 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=28.9
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
+++.|.|++|+||||++.-++-..... |.++..+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~-g~~~G~I~~d 39 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER-GLRVAVVKRH 39 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT-TCCEEEEEC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc-CCceEEEEEc
Confidence 478899999999999998888776654 7777666654
No 375
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.33 E-value=0.18 Score=50.27 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=25.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
+++| ++|.|+||+|||+++..++... +.+.++++
T Consensus 48 ~~~g--~ll~G~~G~GKTtl~~~i~~~~----~~~~i~~~ 81 (254)
T 1ixz_A 48 IPKG--VLLVGPPGVGKTHLARAVAGEA----RVPFITAS 81 (254)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHT----TCCEEEEE
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHh----CCCEEEee
Confidence 6667 8999999999999998776543 34555554
No 376
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.25 E-value=0.099 Score=54.89 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=24.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
+.+|++++|.|++|+||||++.-++-..
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999977666543
No 377
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.21 E-value=0.43 Score=49.36 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=29.5
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
.+++++|+||+|||+++..++..+ +.++++++....
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l----~~~~~~i~~~~~ 84 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV----NADMMFVNGSDC 84 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT----TEEEEEEETTTC
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh----CCCEEEEccccc
Confidence 588999999999999988876543 788999987644
No 378
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.21 E-value=0.25 Score=47.37 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.0
Q ss_pred cEEEEEccCCCChHHHHHHHHHH
Q 005200 468 ELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.+++|.|+||+||||++..++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999998877654
No 379
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.21 E-value=0.12 Score=49.66 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=26.4
Q ss_pred hhhhhhhccCCCcEEEEEccCCCChHHHHHHHH
Q 005200 456 RALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 456 ~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
+.+++ +.+.+|..++|.|++|+|||||+..++
T Consensus 16 ~~l~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 16 PDIRH-LPSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SSGGG-SSCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCHhH-CCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 34555 558889999999999999999988765
No 380
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.18 E-value=0.15 Score=52.69 Aligned_cols=31 Identities=29% Similarity=0.573 Sum_probs=25.6
Q ss_pred hhhhhccCCCcEEEEEccCCCChHHHHHHHH
Q 005200 458 LNELYNVLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 458 LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
+++++.+..|+++.|.|++|+||||++..++
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHHHHHhc
Confidence 4556665679999999999999999987665
No 381
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=89.17 E-value=0.21 Score=47.81 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=19.0
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 005200 469 LTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+++|.||+|+||||++..|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999998876554
No 382
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.14 E-value=0.19 Score=52.71 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=25.6
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
.+++|+|++|+|||+++..|+..+ + +.++|.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l----~--~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF----N--GEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT----T--EEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc----C--Cceeccc
Confidence 389999999999999998877643 2 5667765
No 383
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=89.13 E-value=0.4 Score=53.14 Aligned_cols=64 Identities=23% Similarity=0.164 Sum_probs=51.7
Q ss_pred CCcccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHH
Q 005200 446 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 512 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~ 512 (709)
.....+.||+..+|-++-+.+|+=..|.|++|+|||+++.+++.+. +..-++|....+..++..
T Consensus 200 ~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~---~~~v~V~~~iGER~~Ev~ 263 (578)
T 3gqb_A 200 DPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWS---NADVVVYVGSGERGNEMT 263 (578)
T ss_dssp CSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHS---SCSEEEEEEEEECHHHHH
T ss_pred cCCCcccccchhhhhcccccCCCEEeeeCCCCccHHHHHHHHHhcc---CCCEEEEEEecccHHHHH
Confidence 3446788999999999989999999999999999999999876652 244567777777766654
No 384
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.13 E-value=0.33 Score=46.58 Aligned_cols=29 Identities=31% Similarity=0.257 Sum_probs=23.3
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEE
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 500 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vl 500 (709)
-++.|+|.+|+||||++..++... |.+|+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l----g~~vi 41 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY----GAHVV 41 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH----CCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc----CCEEE
Confidence 478999999999999998877642 66654
No 385
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=89.09 E-value=0.19 Score=53.24 Aligned_cols=30 Identities=33% Similarity=0.593 Sum_probs=23.5
Q ss_pred hhhhccCCCcEEEEEccCCCChHHHHHHHH
Q 005200 459 NELYNVLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 459 D~ll~l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
+.+....+|+++.|.|+||+|||||+..|+
T Consensus 207 ~~L~~~~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 207 KPLEEALTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHHHHHHTTSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEECCCCccHHHHHHHHh
Confidence 333334479999999999999999987665
No 386
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.07 E-value=0.21 Score=48.40 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=18.5
Q ss_pred EEEEEccCCCChHHHHHHHHHH
Q 005200 469 LTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.++|.|+||+||||++..|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999998877653
No 387
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.06 E-value=0.28 Score=48.37 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.+..++|.|+||+||||++..|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999887764
No 388
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.04 E-value=0.18 Score=56.76 Aligned_cols=41 Identities=27% Similarity=0.268 Sum_probs=32.3
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
+.+|++++|.|++|+||||++..|+..+....|..+.++..
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 67899999999999999999998887765442446655643
No 389
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=89.03 E-value=1.3 Score=56.44 Aligned_cols=143 Identities=10% Similarity=0.040 Sum_probs=79.4
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHh-cCCeEEEEECCCC-HHHHHHHHHHHHc---CCCccccccCCCCCCCCH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEH-AGWKFVLCSMENK-VREHARKLLEKHI---KKPFFEANYGGSAERMTV 538 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~-~g~~Vly~SlE~~-~~~~~~Rl~~~~~---g~~~~~i~~g~~~~~l~~ 538 (709)
+..++-+++++|+|+|||..+.-.+++...+ .+.+++|++.--. ..+....+..... |.....+ .| ..+.
T Consensus 939 ~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~l-tG----d~~~ 1013 (1724)
T 4f92_B 939 YNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLL-TG----ETST 1013 (1724)
T ss_dssp HSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEEC-CS----CHHH
T ss_pred hcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEE-EC----CCCc
Confidence 4667889999999999998776666555543 4678999986432 3334444433332 2222211 12 1111
Q ss_pred HHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHH---HhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHH
Q 005200 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAV---LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR 615 (709)
Q Consensus 539 e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~---~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~ 615 (709)
+ ...+...-+++ .|++.+...++... .-.++++||||-...+ .. .+...+..++.+|+.
T Consensus 1014 -~----~~~~~~~~IiV-------~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l-~d-----~rg~~le~il~rl~~ 1075 (1724)
T 4f92_B 1014 -D----LKLLGKGNIII-------STPEKWDILSRRWKQRKNVQNINLFVVDEVHLI-GG-----ENGPVLEVICSRMRY 1075 (1724)
T ss_dssp -H----HHHHHHCSEEE-------ECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGG-GS-----TTHHHHHHHHHHHHH
T ss_pred -c----hhhcCCCCEEE-------ECHHHHHHHHhCcccccccceeeEEEeechhhc-CC-----CCCccHHHHHHHHHH
Confidence 1 12233333444 24454433332211 1246999999976644 21 123445667778887
Q ss_pred HHHHh--CcEEEEEec
Q 005200 616 FAQHH--ACHVWFVAH 629 (709)
Q Consensus 616 lA~~~--~i~Vi~v~h 629 (709)
++... ++-+|+++-
T Consensus 1076 i~~~~~~~~riI~lSA 1091 (1724)
T 4f92_B 1076 ISSQIERPIRIVALSS 1091 (1724)
T ss_dssp HHHTTSSCCEEEEEES
T ss_pred HHhhcCCCceEEEEeC
Confidence 77654 577777776
No 390
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=88.98 E-value=0.93 Score=43.17 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=28.2
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHh--cCCeEEEEECC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEH--AGWKFVLCSME 505 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~--~g~~Vly~SlE 505 (709)
+..|.-+++.+++|+|||..+.-.+...... .+.+++|+..-
T Consensus 37 ~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 80 (206)
T 1vec_A 37 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPT 80 (206)
T ss_dssp HHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSC
T ss_pred HccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCc
Confidence 4567779999999999997655444443221 24568888743
No 391
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=88.91 E-value=0.23 Score=51.32 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=34.0
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~ 511 (709)
..+.-++|.|+||+|||++|..++...... +.+++++.+..-+..+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~-~~~~v~v~~~~~~~~l 68 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARS-DRPLVTLNCAALNESL 68 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCS-SSCCCEEECSSCCHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCccc-CCCeEEEeCCCCChHH
Confidence 445678999999999999998887755443 7788888776443333
No 392
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=88.87 E-value=0.47 Score=57.68 Aligned_cols=115 Identities=16% Similarity=0.070 Sum_probs=64.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHHHHHcCCCc----c-ccccCCCCCCCC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPF----F-EANYGGSAERMT 537 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~-~~~~~~Rl~~~~~g~~~----~-~i~~g~~~~~l~ 537 (709)
+..|.-+++.|++|+|||.+++-++..+... |..+++++.--. ..++..++......... . ..-.| ..+
T Consensus 68 il~g~dvlv~apTGSGKTl~~lp~l~~~~~~-~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~G----g~~ 142 (1054)
T 1gku_B 68 ILRKESFAATAPTGVGKTSFGLAMSLFLALK-GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHG----RIP 142 (1054)
T ss_dssp HHTTCCEECCCCBTSCSHHHHHHHHHHHHTT-SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCS----SCC
T ss_pred HHhCCCEEEEcCCCCCHHHHHHHHHHHHhhc-CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeC----CCC
Confidence 5578889999999999999777777666654 888999886433 44555555443332222 0 11122 223
Q ss_pred HHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccc
Q 005200 538 VEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593 (709)
Q Consensus 538 ~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~ 593 (709)
..+..+..+.+...-+++ .|.+.+...+.. -..+++||||-...+.
T Consensus 143 ~~~~~~~~~~l~~~~IlV-------~TP~~L~~~l~~---L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 143 KREKENFMQNLRNFKIVI-------TTTQFLSKHYRE---LGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp SHHHHHHHHSGGGCSEEE-------EEHHHHHHCSTT---SCCCSEEEESCHHHHH
T ss_pred hhhHHHHHhhccCCCEEE-------EcHHHHHHHHHH---hccCCEEEEeChhhhh
Confidence 333222333343322333 234555444333 2368899999554443
No 393
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=88.75 E-value=0.6 Score=46.11 Aligned_cols=42 Identities=17% Similarity=-0.005 Sum_probs=29.4
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHh-------cCCeEEEEECC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEH-------AGWKFVLCSME 505 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~-------~g~~Vly~SlE 505 (709)
+..|.-+++.+++|+|||...+-.++..... .+..++|+..-
T Consensus 63 ~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt 111 (242)
T 3fe2_A 63 ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPT 111 (242)
T ss_dssp HHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSS
T ss_pred HhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCc
Confidence 4567788999999999997755555544432 25668888754
No 394
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.75 E-value=0.26 Score=48.32 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=20.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHH
Q 005200 469 LTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
+++|.|+||+||||++..|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887654
No 395
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=88.67 E-value=0.48 Score=51.93 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=40.3
Q ss_pred cCCCcEEEEEccCCCChHHH-HHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCC
Q 005200 464 VLPGELTIVTGVPNSGKSEW-IDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 523 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~-a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~ 523 (709)
+..|+.+++.|++|+|||+. ++.++..+... |.+++|++.- ..++..+.....|..
T Consensus 18 l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-~~~~lvl~Pt---r~La~Q~~~~l~g~~ 74 (459)
T 2z83_A 18 LRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-RLRTAVLAPT---RVVAAEMAEALRGLP 74 (459)
T ss_dssp GSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT-TCCEEEEECS---HHHHHHHHHHTTTSC
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEECch---HHHHHHHHHHhcCce
Confidence 77899999999999999986 55555555544 8889999843 445555555555554
No 396
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=88.58 E-value=0.24 Score=46.91 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=19.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHH
Q 005200 469 LTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.+.|.|++|+|||||+.-++-..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998777654
No 397
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=88.56 E-value=0.86 Score=53.37 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=64.2
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHHHHHc--CCCccccccCCCCCCCCHHHHHHH
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHI--KKPFFEANYGGSAERMTVEEFEQG 544 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~-~~~~~~Rl~~~~~--g~~~~~i~~g~~~~~l~~e~~~~~ 544 (709)
.-.++.|++|+|||..+...+...... |..++|+..... +.++..++..... ++....+ .| ..+..+..+.
T Consensus 390 ~~~Ll~a~TGSGKTlvall~il~~l~~-g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l-~G----~~~~~~r~~~ 463 (780)
T 1gm5_A 390 MNRLLQGDVGSGKTVVAQLAILDNYEA-GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALL-IG----ATTPSEKEKI 463 (780)
T ss_dssp CCCEEECCSSSSHHHHHHHHHHHHHHH-TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEEC-CS----SSCHHHHHHH
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEE-eC----CCCHHHHHHH
Confidence 368999999999999988888877766 899999986533 5566666655544 3332222 22 4555555545
Q ss_pred HHHHhc-CcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcc
Q 005200 545 KAWLSN-TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 591 (709)
Q Consensus 545 ~~~l~~-~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~ 591 (709)
...+.. ...++- +.+ +-+ .....-.++++||||-...
T Consensus 464 ~~~l~~g~~~IvV----gT~--~ll----~~~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 464 KSGLRNGQIDVVI----GTH--ALI----QEDVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HHHHHSSCCCEEE----ECT--THH----HHCCCCSCCCEEEEESCCC
T ss_pred HHHHhcCCCCEEE----ECH--HHH----hhhhhccCCceEEecccch
Confidence 454543 232221 122 222 1111234688999996654
No 398
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=88.39 E-value=0.24 Score=47.45 Aligned_cols=29 Identities=21% Similarity=0.079 Sum_probs=23.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEE
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC 502 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~ 502 (709)
.+.|.|++|+||||++..++. . |.++++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~----g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L----GAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T----TCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C----CCEEEEc
Confidence 588999999999999887765 2 6666543
No 399
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=88.33 E-value=0.25 Score=47.54 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=18.5
Q ss_pred EEEEEccCCCChHHHHHHHHH
Q 005200 469 LTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~ 489 (709)
++.|.|++|+||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999887764
No 400
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.32 E-value=0.31 Score=57.47 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=29.6
Q ss_pred ccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 463 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 463 ~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
++.++.-++|.|+||+|||+++..++..+ +.+++.++.
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~~ 544 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISIKG 544 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHH----TCCCCCCCC
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHh----CCCEEEEec
Confidence 37788889999999999999998887754 455555543
No 401
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.24 E-value=0.83 Score=49.29 Aligned_cols=53 Identities=13% Similarity=0.064 Sum_probs=37.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHHHHHcCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKK 522 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~-~~~~~~Rl~~~~~g~ 522 (709)
-+++++++|+|||..+..++.......+.+++++..--. ..+....+ ....+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~-~~~~~~ 78 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESF-RRLFNL 78 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHH-HHHBCS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHH-HHHhCc
Confidence 678999999999999998888877655889999986422 33344443 344454
No 402
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.23 E-value=0.3 Score=48.49 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=20.7
Q ss_pred cEEEEEccCCCChHHHHHHHHHHH
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
-++.|.|+||+||||++..++..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999998876654
No 403
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.19 E-value=0.18 Score=56.27 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=26.4
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
++.+.- +..|+.++|.|++|+||||++..++-.+
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344433 7889999999999999999988765443
No 404
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.16 E-value=0.28 Score=50.76 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=25.5
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
..+++|+||+|+|||+++..++.. .+..++|.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~------~~~~iis~D 42 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI------LPVELISVD 42 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH------SCEEEEECC
T ss_pred CcEEEEECCCccCHHHHHHHHHHh------CCCcEEecc
Confidence 358999999999999998887664 334566665
No 405
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=88.12 E-value=0.19 Score=54.13 Aligned_cols=39 Identities=8% Similarity=0.097 Sum_probs=25.3
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHH-----hcCCeEEEEECCCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINE-----HAGWKFVLCSMENK 507 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~-----~~g~~Vly~SlE~~ 507 (709)
+.++.|..|+||||++.++|..++. ..|.+|+++.++..
T Consensus 114 Iav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~ 157 (403)
T 3ez9_A 114 IFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ 157 (403)
T ss_dssp EEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS
T ss_pred EEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 5566689999999999999999983 24999999999853
No 406
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=88.01 E-value=0.41 Score=54.10 Aligned_cols=40 Identities=30% Similarity=0.330 Sum_probs=33.4
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcC-CeEEEEECC
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAG-WKFVLCSME 505 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g-~~Vly~SlE 505 (709)
+.|-+++|.|.||+||||++..++..+... | .++.+++.+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~-G~~~~~~lD~D 434 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQ-GGRSVSLLLGD 434 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHH-CSSCEEEEEHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhccc-CCceEEEECcH
Confidence 356799999999999999999999887765 7 888877743
No 407
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=87.94 E-value=0.69 Score=56.87 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=31.4
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHh---cCCeEEEEECCCC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEH---AGWKFVLCSMENK 507 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~---~g~~Vly~SlE~~ 507 (709)
-.++.|.|..|+|||++|.+++.+.... ....|+|+++...
T Consensus 147 ~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 147 PGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 3589999999999999999988765321 1345889988653
No 408
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.94 E-value=0.33 Score=44.44 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=20.8
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|.+| +++|.|++|+|||+++..+..
T Consensus 21 f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 21 FKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 5544 999999999999999876655
No 409
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=87.92 E-value=0.66 Score=44.96 Aligned_cols=54 Identities=6% Similarity=0.095 Sum_probs=32.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHh--cCCeEEEEECCCC-HHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEH--AGWKFVLCSMENK-VREHARKLLE 517 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~--~g~~Vly~SlE~~-~~~~~~Rl~~ 517 (709)
+..|.-+++.+++|+|||....-.+++.... .+.+++|+..--. ..++..++..
T Consensus 48 ~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 104 (224)
T 1qde_A 48 IIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMA 104 (224)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHH
Confidence 4456679999999999997644433333221 2557888875422 3344444433
No 410
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.92 E-value=0.3 Score=47.41 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHH
Q 005200 469 LTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.++|.|+||+||||++..|+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999998887654
No 411
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=87.91 E-value=0.26 Score=40.02 Aligned_cols=27 Identities=26% Similarity=0.808 Sum_probs=19.8
Q ss_pred eeecCCCCCCCCCCCceEEEEeeCCCeeEEEEecccccc
Q 005200 141 RMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGW 179 (709)
Q Consensus 141 ~~~CPfc~~~~~~~~s~sv~i~~~~~~~~~~Cf~~~Cg~ 179 (709)
.+.||||+.. +|.... .|+|+|.. |+.
T Consensus 35 ky~CpfCGk~-------~vkR~a---~GIW~C~k--Cg~ 61 (83)
T 3j21_i 35 KHTCPVCGRK-------AVKRIS---TGIWQCQK--CGA 61 (83)
T ss_dssp CBCCSSSCSS-------CEEEEE---TTEEEETT--TCC
T ss_pred ccCCCCCCCc-------eeEecC---cCeEEcCC--CCC
Confidence 5699999863 344331 68999988 985
No 412
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=87.88 E-value=0.72 Score=47.99 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=34.7
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHh-cCCeEEEEECCCC-HHHHHHHHHH
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEH-AGWKFVLCSMENK-VREHARKLLE 517 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~-~g~~Vly~SlE~~-~~~~~~Rl~~ 517 (709)
.-+++.+++|+|||..+...+...... .+.+++++..--. ..++.+++..
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 96 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIES 96 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHH
Confidence 688999999999998877777665532 3678888875432 3444544443
No 413
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.88 E-value=0.26 Score=51.28 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.3
Q ss_pred cEEEEEccCCCChHHHHHHHHHH
Q 005200 468 ELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.+++|+|++|+||||++..++-.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 58999999999999999887754
No 414
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=87.86 E-value=0.46 Score=53.98 Aligned_cols=37 Identities=24% Similarity=0.190 Sum_probs=31.6
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
+|.+++|.|.||+||||++..|+..+... |.+++++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~-G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCH-GIPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEec
Confidence 56799999999999999999999887655 88877764
No 415
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.85 E-value=0.26 Score=50.47 Aligned_cols=22 Identities=36% Similarity=0.816 Sum_probs=19.9
Q ss_pred cEEEEEccCCCChHHHHHHHHH
Q 005200 468 ELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.+++|.|+||+||||++..++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988876
No 416
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=87.84 E-value=0.89 Score=46.70 Aligned_cols=50 Identities=22% Similarity=0.293 Sum_probs=33.8
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLE 517 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~-~~~~~~Rl~~ 517 (709)
+..|.-+++.+++|+|||..+...+.. . +.+++++..--. ..++..++..
T Consensus 28 i~~~~~~lv~~~TGsGKT~~~~~~~~~---~-~~~~liv~P~~~L~~q~~~~~~~ 78 (337)
T 2z0m_A 28 MLQGKNVVVRAKTGSGKTAAYAIPILE---L-GMKSLVVTPTRELTRQVASHIRD 78 (337)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHH---H-TCCEEEECSSHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEcCCCCcHHHHHHHHHHh---h-cCCEEEEeCCHHHHHHHHHHHHH
Confidence 446778999999999999876554433 3 788999875422 3444444443
No 417
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.84 E-value=0.29 Score=50.96 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=24.9
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
.+++|.|+||+|||+++..++... ...+++.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l------~~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL------PCELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS------CEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc------CCcEEecc
Confidence 489999999999999988876632 35566664
No 418
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.82 E-value=0.45 Score=53.08 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=30.0
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
+...++|.|+||+|||++|..++..+ |.++++++...
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l----~~~~i~in~s~ 112 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL----GYDILEQNASD 112 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT----TCEEEEECTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc----CCCEEEEeCCC
Confidence 34689999999999999998877654 78888887643
No 419
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.80 E-value=0.27 Score=49.90 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=25.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
+++| ++|.|+||+|||+++..++... +.+.++++
T Consensus 72 ~~~g--vll~Gp~GtGKTtl~~~i~~~~----~~~~i~~~ 105 (278)
T 1iy2_A 72 IPKG--VLLVGPPGVGKTHLARAVAGEA----RVPFITAS 105 (278)
T ss_dssp CCCE--EEEECCTTSSHHHHHHHHHHHT----TCCEEEEE
T ss_pred CCCe--EEEECCCcChHHHHHHHHHHHc----CCCEEEec
Confidence 6667 8999999999999998776543 34555554
No 420
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.78 E-value=0.25 Score=53.50 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=21.6
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
....+++|.|+||+||||++..++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999888765
No 421
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.68 E-value=2.5 Score=49.32 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=24.6
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHh
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEH 494 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~ 494 (709)
.+.-++|.|+||+|||+++..++..+...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~ 234 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 45678999999999999999998877653
No 422
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=87.62 E-value=0.36 Score=53.60 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=49.4
Q ss_pred CcccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHH
Q 005200 447 DEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 512 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~ 512 (709)
....+.||+..+|-++-+.+|+-..|.|++|+|||+++.+++.+. +..-++|+...+..++..
T Consensus 207 ~~epl~TGirvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~---~~~~~V~~~iGER~~Ev~ 269 (588)
T 3mfy_A 207 PEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS---DAQVVIYIGCGERGNEMT 269 (588)
T ss_dssp SCSEECCSCHHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS---SCSEEEEEECCSSSSHHH
T ss_pred CCcccccCcchhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc---CCCEEEEEEecccHHHHH
Confidence 345688999999999999999999999999999999998875531 234566777776655543
No 423
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.59 E-value=0.2 Score=49.37 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=27.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEE
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC 502 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~ 502 (709)
..+|+++.|.|+.|+||||++..++-. +..|.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~ 50 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLL 50 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEE
Confidence 578999999999999999998776553 4456554
No 424
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=87.54 E-value=0.29 Score=46.61 Aligned_cols=22 Identities=32% Similarity=0.209 Sum_probs=19.4
Q ss_pred cEEEEEccCCCChHHHHHHHHH
Q 005200 468 ELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.++.|+|++|+||||++..|+.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999887765
No 425
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.43 E-value=0.33 Score=47.12 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=20.0
Q ss_pred CcEEEEEccCCCChHHHHHHHHH
Q 005200 467 GELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
+-+++|.|++|+||||++..++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999888754
No 426
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=87.43 E-value=1.7 Score=49.21 Aligned_cols=112 Identities=9% Similarity=-0.036 Sum_probs=61.8
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFE 542 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~-~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~ 542 (709)
+..|.-+++.+++|+|||...+-.++ ..+..+++++.--. ..+.+.++... |+....+. +..+.++..
T Consensus 56 il~g~d~lv~~pTGsGKTl~~~lpal----~~~g~~lVisP~~~L~~q~~~~l~~~--gi~~~~l~-----~~~~~~~~~ 124 (591)
T 2v1x_A 56 TMAGKEVFLVMPTGGGKSLCYQLPAL----CSDGFTLVICPLISLMEDQLMVLKQL--GISATMLN-----ASSSKEHVK 124 (591)
T ss_dssp HHTTCCEEEECCTTSCTTHHHHHHHH----TSSSEEEEECSCHHHHHHHHHHHHHH--TCCEEECC-----SSCCHHHHH
T ss_pred HHcCCCEEEEECCCChHHHHHHHHHH----HcCCcEEEEeCHHHHHHHHHHHHHhc--CCcEEEEe-----CCCCHHHHH
Confidence 44577799999999999964332222 22568888876422 33444444433 55443332 245666655
Q ss_pred HHHHHHh---cC-cceEEecCCCCCCHHHH------HHHHHHHHHhcCCcEEEEccCcccc
Q 005200 543 QGKAWLS---NT-FSLIRCENDSLPSIKWV------LDLAKAAVLRHGVRGLVIDPYNELD 593 (709)
Q Consensus 543 ~~~~~l~---~~-~~~i~~~~~~~~~i~~i------~~~i~~~~~~~~~~lIVID~~~~l~ 593 (709)
.....+. .. .+++ .|++.+ ...+........+++||||-...+.
T Consensus 125 ~~~~~l~~~~~~~~Ilv-------~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is 178 (591)
T 2v1x_A 125 WVHAEMVNKNSELKLIY-------VTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCS 178 (591)
T ss_dssp HHHHHHHCTTCCCCEEE-------ECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGS
T ss_pred HHHHHhhcccCCCCEEE-------EChhHhhccHHHHHHHHhhhhccCCcEEEEECccccc
Confidence 5544442 22 2232 233433 3344444445579999999666554
No 427
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=87.33 E-value=0.44 Score=50.59 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=27.1
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
+.-++|.|+||+|||++|..++..+ +.++..++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l----~~~~~~~~~ 105 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL----DIPIAISDA 105 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT----TCCEEEEEG
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh----CCCEEEecc
Confidence 4468999999999999998877654 677777764
No 428
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.18 E-value=0.36 Score=45.46 Aligned_cols=24 Identities=42% Similarity=0.328 Sum_probs=21.1
Q ss_pred CCcEEEEEccCCCChHHHHHHHHH
Q 005200 466 PGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.|.-++|.|+||+||||+++.++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999988776
No 429
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.17 E-value=0.43 Score=47.06 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=22.7
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
..+|.++.|.|++|+||||++..++..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 567889999999999999998877654
No 430
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=87.17 E-value=0.32 Score=41.00 Aligned_cols=28 Identities=21% Similarity=0.570 Sum_probs=20.2
Q ss_pred eeeecCCCCCCCCCCCceEEEEeeCCCeeEEEEecccccc
Q 005200 140 NRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGW 179 (709)
Q Consensus 140 ~~~~CPfc~~~~~~~~s~sv~i~~~~~~~~~~Cf~~~Cg~ 179 (709)
..+.||||+.. +|.... .|+|+|.. |+.
T Consensus 35 aky~CpfCgk~-------~vKR~a---~GIW~C~k--Cg~ 62 (103)
T 4a17_Y 35 AKYGCPFCGKV-------AVKRAA---VGIWKCKP--CKK 62 (103)
T ss_dssp SCEECTTTCCE-------EEEEEE---TTEEEETT--TTE
T ss_pred cCCCCCCCCCc-------eeeecC---cceEEcCC--CCC
Confidence 36799999763 454431 68999988 985
No 431
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.12 E-value=0.44 Score=49.16 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=28.1
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
..-++|.|+||+|||+++..++... +.++.+++..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~----~~~~~~~~~~ 72 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL----GVNLRVTSGP 72 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH----TCCEEEECTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh----CCCEEEEecc
Confidence 3578999999999999999887654 5777777654
No 432
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.05 E-value=0.37 Score=51.63 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.5
Q ss_pred cEEEEEccCCCChHHHHHHHHHHH
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.+++|+|+||+|||+++..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 488999999999999999988765
No 433
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=87.01 E-value=0.44 Score=49.60 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=25.7
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
.-++|.|+||+|||+++..++.. .+.++..++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~----~~~~~~~~~~ 88 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE----MSANIKTTAA 88 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH----TTCCEEEEEG
T ss_pred CeEEEECcCCCCHHHHHHHHHHH----hCCCeEEecc
Confidence 35899999999999999888554 2666666665
No 434
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.00 E-value=0.56 Score=50.91 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=31.6
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
.-++|.|+||+|||+++..++.++... |.+|+++....
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~-g~~viv~Dpkg 91 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLR-GDRMVIVDPNG 91 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHT-TCEEEEEEETT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 478999999999999988888888776 88888877543
No 435
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=86.98 E-value=0.42 Score=53.64 Aligned_cols=49 Identities=24% Similarity=0.332 Sum_probs=38.0
Q ss_pred hhhhhhhc--c----CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 456 RALNELYN--V----LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 456 ~~LD~ll~--l----~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
++....+. + ..|.+++|.|.+|+||||++..++..+... |.++.+++.+
T Consensus 355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~-G~~~~~ld~D 409 (546)
T 2gks_A 355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQAR-GRKVTLLDGD 409 (546)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECHH
T ss_pred hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhc-CCeEEEECch
Confidence 44555554 3 347899999999999999999999887765 8888888743
No 436
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=86.97 E-value=0.48 Score=50.06 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=27.2
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
++.-++|.|+||+|||++|..++..+ +.+++.++.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~----~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL----DVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT----TCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc----CCCEEEech
Confidence 34568999999999999998887654 667766654
No 437
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.86 E-value=0.38 Score=50.33 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=21.2
Q ss_pred cEEEEEccCCCChHHHHHHHHHHH
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
+.++|.|+||+||||++.-++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999999998887654
No 438
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.71 E-value=0.37 Score=44.83 Aligned_cols=23 Identities=39% Similarity=0.687 Sum_probs=19.5
Q ss_pred CCcEEEEEccCCCChHHHHHHHH
Q 005200 466 PGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla 488 (709)
+|.-++|.|.||+|||+|+..++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 56778999999999999988764
No 439
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=86.69 E-value=1 Score=44.62 Aligned_cols=53 Identities=15% Similarity=-0.016 Sum_probs=33.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHh-----------cCCeEEEEECCCC-HHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEH-----------AGWKFVLCSMENK-VREHARKLL 516 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~-----------~g~~Vly~SlE~~-~~~~~~Rl~ 516 (709)
+..|.-+++.+++|+|||...+-.+++.... .+.+++|+..--. ..++..++.
T Consensus 57 i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 121 (253)
T 1wrb_A 57 ILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQ 121 (253)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHH
T ss_pred HhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHH
Confidence 4456678999999999997665555554432 1357888874322 334444443
No 440
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.68 E-value=0.42 Score=45.70 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHH
Q 005200 469 LTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
++.|+|++|+||||++..++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999988876643
No 441
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=86.63 E-value=0.74 Score=52.61 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=39.8
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcC---CeEEEEECCCC-HHHHHHHHHHH
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAG---WKFVLCSMENK-VREHARKLLEK 518 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g---~~Vly~SlE~~-~~~~~~Rl~~~ 518 (709)
+.-++|.|+||+|||+.+.+-+.+++.+.| .+++++++-.. ..++..|+...
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 456788899999999999999998887633 67999997544 55666666544
No 442
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=86.53 E-value=0.4 Score=53.81 Aligned_cols=35 Identities=29% Similarity=0.524 Sum_probs=27.6
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
+|..++|.|+||+|||+++..++... +.+...+++
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l----~~~~~~i~~ 141 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL----GRKFVRISL 141 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH----TCEEEEECC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc----CCCeEEEEe
Confidence 78999999999999999999887655 344444443
No 443
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=86.27 E-value=1.7 Score=46.20 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=19.4
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
+..|.-+++.+++|+|||...+-.++
T Consensus 49 i~~~~~~lv~a~TGsGKT~~~~~~~l 74 (417)
T 2i4i_A 49 IKEKRDLMACAQTGSGKTAAFLLPIL 74 (417)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHH
T ss_pred HccCCCEEEEcCCCCHHHHHHHHHHH
Confidence 55677889999999999974443333
No 444
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=86.27 E-value=0.51 Score=51.53 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=29.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
..+..-++|.|+||+|||++|..++..+ . +.++++++..
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~--~-~~~~~~v~~~ 202 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEA--N-NSTFFSISSS 202 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHC--C-SSEEEEECCC
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc--C-CCCEEEEeHH
Confidence 3445678999999999999998877654 2 6677766643
No 445
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=86.24 E-value=0.49 Score=45.90 Aligned_cols=38 Identities=24% Similarity=0.237 Sum_probs=28.9
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
-.++|.|.+|+|||+|+.+++..... ..++..+..+..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~--~~~~~~i~~d~~ 76 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKD--KYKIACIAGDVI 76 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTT--TCCEEEEEEETT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcc--CCeEEEEECCCC
Confidence 36788899999999999999887643 356666665543
No 446
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=85.96 E-value=0.74 Score=45.35 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=29.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
+++-+-.+|+|||+++..|+..++++ |.+|.||-
T Consensus 7 i~Itgt~t~vGKT~vt~~L~~~l~~~-G~~V~~~K 40 (228)
T 3of5_A 7 FFIIGTDTEVGKTYISTKLIEVCEHQ-NIKSLCLK 40 (228)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHC-CCeeEEec
Confidence 55555569999999999999999887 99999984
No 447
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=85.87 E-value=0.3 Score=52.77 Aligned_cols=21 Identities=43% Similarity=0.504 Sum_probs=18.7
Q ss_pred EEEEEccCCCChHHHHHHHHH
Q 005200 469 LTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~ 489 (709)
.+.|.|++|+|||||+.-++-
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 999999999999999876654
No 448
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=85.80 E-value=0.72 Score=50.48 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=28.6
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
..++.-++|.|+||+|||++|..+|..+-. ..++++++.
T Consensus 60 ~~~~~~iLl~GppGtGKT~la~ala~~l~~--~~~~~~~~~ 98 (456)
T 2c9o_A 60 KMAGRAVLLAGPPGTGKTALALAIAQELGS--KVPFCPMVG 98 (456)
T ss_dssp CCTTCEEEEECCTTSSHHHHHHHHHHHHCT--TSCEEEEEG
T ss_pred CCCCCeEEEECCCcCCHHHHHHHHHHHhCC--CceEEEEeH
Confidence 334456899999999999999988876421 266666654
No 449
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=85.67 E-value=0.59 Score=51.79 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=28.6
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
+++| ++|.|+||+|||+++..++..+ +.++++++..
T Consensus 63 ip~G--vLL~GppGtGKTtLaraIa~~~----~~~~i~i~g~ 98 (499)
T 2dhr_A 63 IPKG--VLLVGPPGVGKTHLARAVAGEA----RVPFITASGS 98 (499)
T ss_dssp CCSE--EEEECSSSSSHHHHHHHHHHHT----TCCEEEEEGG
T ss_pred CCce--EEEECCCCCCHHHHHHHHHHHh----CCCEEEEehh
Confidence 6666 8999999999999998776543 5778888753
No 450
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=85.58 E-value=0.41 Score=48.81 Aligned_cols=28 Identities=32% Similarity=0.337 Sum_probs=22.9
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEE
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 500 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vl 500 (709)
-+++|+|++|+||||++..|+ . . |.+++
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~---l-g~~~i 103 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-N---L-GAYII 103 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-H---H-TCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHH-H---C-CCcEE
Confidence 489999999999999999887 3 2 76653
No 451
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=85.47 E-value=0.99 Score=49.28 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=27.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
-++|.|+||+|||+++..++... +.++..++....
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~----~~~f~~l~a~~~ 86 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYA----NADVERISAVTS 86 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT----TCEEEEEETTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHh----CCCeEEEEeccC
Confidence 58999999999999998777653 567777776544
No 452
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=85.41 E-value=2.3 Score=40.88 Aligned_cols=42 Identities=10% Similarity=0.013 Sum_probs=29.4
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHh--cCCeEEEEECC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEH--AGWKFVLCSME 505 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~--~g~~Vly~SlE 505 (709)
+..|.-+++.+++|+|||..+.-.+...... .+.+++|+..-
T Consensus 48 ~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 91 (220)
T 1t6n_A 48 AILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 91 (220)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred HhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCC
Confidence 3346669999999999998776666655432 13478888754
No 453
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=85.36 E-value=0.73 Score=52.48 Aligned_cols=40 Identities=15% Similarity=0.372 Sum_probs=31.9
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHH---hcCCeEEEEECC
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINE---HAGWKFVLCSME 505 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~---~~g~~Vly~SlE 505 (709)
.+.+++|.|+||+|||+++..++..+.. ..+.+|+..+.-
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APT 205 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPT 205 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCC
Confidence 4679999999999999999988887764 236678877653
No 454
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=85.29 E-value=1.2 Score=47.18 Aligned_cols=54 Identities=11% Similarity=0.112 Sum_probs=36.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHh--cCCeEEEEECCCC-HHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEH--AGWKFVLCSMENK-VREHARKLLE 517 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~--~g~~Vly~SlE~~-~~~~~~Rl~~ 517 (709)
+..|.-+++.+++|+|||..+...+++.... .+.+++++..--. ..++..++..
T Consensus 74 ~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 130 (414)
T 3eiq_A 74 CIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMA 130 (414)
T ss_dssp HHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHH
Confidence 4456678999999999998877766665432 3677888876432 3344444433
No 455
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=85.22 E-value=0.31 Score=51.16 Aligned_cols=89 Identities=10% Similarity=0.083 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHhc--CCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHh--CcEEEEEeccCCCCCCCCC
Q 005200 564 SIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHH--ACHVWFVAHPRQLHNWVGE 639 (709)
Q Consensus 564 ~i~~i~~~i~~~~~~~--~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~--~i~Vi~v~h~rk~~~~~~~ 639 (709)
....++..|.+.+... .+--|+|=++..-.-.. ........+-.++..||.|.+.+ +++++++...--- .
T Consensus 199 ~y~~lL~~I~~~i~~~~~~ilRIvI~SLgSP~wy~-~~~~~~~~ll~FL~~LRaLlR~~~~~~v~~iTlP~~l~-~---- 272 (361)
T 4a8j_A 199 PVSTILSQIEQTIKRNDKKLIRIVIPSLLHPAMYP-PKMFESSEIIGLMHGVRSLVKKYYERVVLFASISIDII-T---- 272 (361)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEEETTTTCTTTSC-GGGGBHHHHHHHHHHHHHHHHHTTTTEEEEEEEECTTS-C----
T ss_pred hHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCC-CcccCHHHHHHHHHHHHHHHhhcCCceEEEEEEChHHc-C----
Confidence 4567888887776543 34577777665432111 11113456788999999999987 4455555542111 1
Q ss_pred CCccccccCchhhhcccceEEEEee
Q 005200 640 PPNLYDISGSAHFINKCDNGIVIHR 664 (709)
Q Consensus 640 ~p~l~di~GS~~i~~~AD~vl~l~r 664 (709)
. .+ ...++..+|.||.|.-
T Consensus 273 --~--~l--~~rle~l~D~vi~L~p 291 (361)
T 4a8j_A 273 --P--PL--LVLLRNMFDSVINLEP 291 (361)
T ss_dssp --H--HH--HHHHHHHCSEEEEEEE
T ss_pred --h--HH--HHHHHHhCcEEEEeee
Confidence 1 11 2479999999999986
No 456
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=85.17 E-value=0.64 Score=45.73 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=33.0
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHh--cCCeEEEEECCCC-HHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEH--AGWKFVLCSMENK-VREHARKL 515 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~--~g~~Vly~SlE~~-~~~~~~Rl 515 (709)
+..|.-+++.+++|+|||......++..... .+.+++|+..--. ..++.+++
T Consensus 64 i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 118 (237)
T 3bor_A 64 CIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVI 118 (237)
T ss_dssp HHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHH
T ss_pred HhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHH
Confidence 4456678999999999997755555544321 2567888875422 33444444
No 457
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.10 E-value=0.26 Score=49.45 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.1
Q ss_pred EEEEccCCCChHHHHHHHHHHH
Q 005200 470 TIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 470 ~ii~G~pG~GKT~~a~qla~~~ 491 (709)
++|.|+||+|||+++..++...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999887643
No 458
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=85.01 E-value=5.6 Score=50.72 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=78.8
Q ss_pred cchhhhhh----hc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHh----------cCCeEEEEECCCC-HHHHHHHHH
Q 005200 454 GWRALNEL----YN--VLPGELTIVTGVPNSGKSEWIDALICNINEH----------AGWKFVLCSMENK-VREHARKLL 516 (709)
Q Consensus 454 g~~~LD~l----l~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~----------~g~~Vly~SlE~~-~~~~~~Rl~ 516 (709)
|++.|+.+ +. +..++=+++++|+|+|||..+.-.+++...+ .|.+++|++.=-. ..+..+.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 45555543 23 6778899999999999998776666655532 2678999986432 233444443
Q ss_pred HHHc--CCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHH---HHhcCCcEEEEccCcc
Q 005200 517 EKHI--KKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA---VLRHGVRGLVIDPYNE 591 (709)
Q Consensus 517 ~~~~--g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~---~~~~~~~lIVID~~~~ 591 (709)
.... |+.... ..|+ ...++.+ +...-+++ .|++.+...++.. ..-..+++||||-..
T Consensus 156 ~~~~~~gi~V~~-~tGd--~~~~~~~-------~~~~~IlV-------tTpEkld~llr~~~~~~~l~~v~~vIiDEvH- 217 (1724)
T 4f92_B 156 KRLATYGITVAE-LTGD--HQLCKEE-------ISATQIIV-------CTPEKWDIITRKGGERTYTQLVRLIILDEIH- 217 (1724)
T ss_dssp HHHTTTTCCEEE-CCSS--CSSCCTT-------GGGCSEEE-------ECHHHHHHHTTSSTTHHHHTTEEEEEETTGG-
T ss_pred HHHhhCCCEEEE-EECC--CCCCccc-------cCCCCEEE-------ECHHHHHHHHcCCccchhhcCcCEEEEecch-
Confidence 3333 222221 2331 1122111 12222333 2344332222111 112468999999764
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHH--hCcEEEEEec
Q 005200 592 LDHQRPVSQTETEYVSQMLTMVKRFAQH--HACHVWFVAH 629 (709)
Q Consensus 592 l~~~~~~~~~~~~~~~~i~~~Lk~lA~~--~~i~Vi~v~h 629 (709)
+++. ++...+..++.++....+. .++-+|+++-
T Consensus 218 ~l~d-----~RG~~lE~~l~rl~~~~~~~~~~~riI~LSA 252 (1724)
T 4f92_B 218 LLHD-----DRGPVLEALVARAIRNIEMTQEDVRLIGLSA 252 (1724)
T ss_dssp GGGS-----TTHHHHHHHHHHHHHHHHHHTCCCEEEEEEC
T ss_pred hcCC-----ccHHHHHHHHHHHHHHHHhCCCCCcEEEEec
Confidence 4432 2223344555555554332 3566777665
No 459
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=84.94 E-value=0.56 Score=46.35 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.3
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
+|-+++|.|.+|+||||++..++..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35689999999999999998887754
No 460
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=84.93 E-value=0.34 Score=40.15 Aligned_cols=27 Identities=22% Similarity=0.608 Sum_probs=19.4
Q ss_pred eeecCCCCCCCCCCCceEEEEeeCCCeeEEEEecccccc
Q 005200 141 RMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGW 179 (709)
Q Consensus 141 ~~~CPfc~~~~~~~~s~sv~i~~~~~~~~~~Cf~~~Cg~ 179 (709)
.+.||||+.. +|... ..|+|+|.. |+.
T Consensus 36 ky~CpfCgk~-------~vkR~---a~GIW~C~~--Cg~ 62 (92)
T 3iz5_m 36 KYFCEFCGKF-------AVKRK---AVGIWGCKD--CGK 62 (92)
T ss_dssp CBCCTTTCSS-------CBEEE---ETTEEECSS--SCC
T ss_pred cccCcccCCC-------eeEec---CcceEEcCC--CCC
Confidence 5699999863 33332 168999988 985
No 461
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=84.89 E-value=0.56 Score=45.27 Aligned_cols=27 Identities=30% Similarity=0.614 Sum_probs=21.7
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
|.+| +++|.|++|+|||+++..+...+
T Consensus 21 f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 21 FKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 5554 99999999999999988665443
No 462
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=84.85 E-value=0.42 Score=52.59 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=28.4
Q ss_pred cchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 454 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 454 g~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|..|+.+-- +.+ +++.|.|++|+||||++.-++--
T Consensus 16 ~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 16 NWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 3556665544 888 99999999999999998866543
No 463
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=84.85 E-value=0.59 Score=49.22 Aligned_cols=29 Identities=34% Similarity=0.394 Sum_probs=24.6
Q ss_pred cCCCcE--EEEEccCCCChHHHHHHHHHHHH
Q 005200 464 VLPGEL--TIVTGVPNSGKSEWIDALICNIN 492 (709)
Q Consensus 464 l~~G~L--~ii~G~pG~GKT~~a~qla~~~a 492 (709)
+.+|+. ++|.|++|+||||++..++..+.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 567777 99999999999999988877654
No 464
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.78 E-value=0.79 Score=47.73 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=28.0
Q ss_pred EEEEccCCCChHHHHHHHHHHHHHh--cCCeEEEEECC
Q 005200 470 TIVTGVPNSGKSEWIDALICNINEH--AGWKFVLCSME 505 (709)
Q Consensus 470 ~ii~G~pG~GKT~~a~qla~~~a~~--~g~~Vly~SlE 505 (709)
++|.|+||+|||+++..++..+... ....+..++..
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 8999999999999999999887532 24566666554
No 465
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=84.53 E-value=0.72 Score=47.84 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=27.8
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
+..|.-++|.|+||+|||+++..++..+ +.++..+.+
T Consensus 43 l~~~~~vll~G~pGtGKT~la~~la~~~----~~~~~~i~~ 79 (331)
T 2r44_A 43 ICTGGHILLEGVPGLAKTLSVNTLAKTM----DLDFHRIQF 79 (331)
T ss_dssp HHHTCCEEEESCCCHHHHHHHHHHHHHT----TCCEEEEEC
T ss_pred HHcCCeEEEECCCCCcHHHHHHHHHHHh----CCCeEEEec
Confidence 4446689999999999999999876643 455555554
No 466
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=84.52 E-value=0.72 Score=45.10 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=24.0
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.+|-+++|.|++|+||||.+..++..+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999887765
No 467
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=84.52 E-value=0.76 Score=48.73 Aligned_cols=53 Identities=6% Similarity=0.019 Sum_probs=34.3
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHh--cCCeEEEEECCCC-HHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEH--AGWKFVLCSMENK-VREHARKLL 516 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~--~g~~Vly~SlE~~-~~~~~~Rl~ 516 (709)
+..|.-+++.+++|+|||..+...+...... .+.+++|+..--. ..++.+++.
T Consensus 55 i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 110 (400)
T 1s2m_A 55 AITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVR 110 (400)
T ss_dssp HHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred HhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHH
Confidence 4346668999999999998776666655432 2567888875422 334444443
No 468
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=84.51 E-value=0.35 Score=54.72 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=25.8
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHH
Q 005200 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
.|+++-- +++|+.+.|.|++|+||||++.-++
T Consensus 356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred ceeeeEEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 4555533 9999999999999999999976443
No 469
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=84.45 E-value=0.24 Score=44.82 Aligned_cols=25 Identities=12% Similarity=-0.090 Sum_probs=19.7
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
..+.-++|.|+||+|||++|..++.
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCCCcEEEECCCCccHHHHHHHHHH
Confidence 3445688999999999999776554
No 470
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=84.41 E-value=0.51 Score=43.35 Aligned_cols=20 Identities=40% Similarity=0.516 Sum_probs=17.8
Q ss_pred EEEEEccCCCChHHHHHHHH
Q 005200 469 LTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla 488 (709)
.++|.|++|+|||+|+..++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999998875
No 471
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=84.36 E-value=0.69 Score=48.60 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.7
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHH
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNIN 492 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a 492 (709)
..++|.|++|+|||+++..++..+.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999998877653
No 472
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=84.23 E-value=0.41 Score=50.79 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.8
Q ss_pred cCC--CcEEEEEccCCCChHHHHHHHHHH
Q 005200 464 VLP--GELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 464 l~~--G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+.+ |+.+.|.|++|+|||||+..|+-.
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 667 999999999999999998877654
No 473
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=84.23 E-value=0.57 Score=50.22 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=26.1
Q ss_pred hhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005200 461 LYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 461 ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
+++ +..|..+.|.|+||+|||||...++-
T Consensus 13 ~lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 13 QWGRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CCSSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 466 88999999999999999999998876
No 474
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=84.20 E-value=0.49 Score=50.27 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=29.7
Q ss_pred cCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005200 579 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 579 ~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
.+++++++|- +..+.+ ......++..|+++.. .|.+||+++|.
T Consensus 302 ~~p~~lllDE-------pt~~LD-~~~~~~~~~~l~~l~~-~g~tvi~itH~ 344 (365)
T 3qf7_A 302 GRLDAFFIDE-------GFSSLD-TENKEKIASVLKELER-LNKVIVFITHD 344 (365)
T ss_dssp TTCCEEEEES-------CCTTSC-HHHHHHHHHHHHGGGG-SSSEEEEEESC
T ss_pred CCCCEEEEeC-------CCccCC-HHHHHHHHHHHHHHHh-CCCEEEEEecc
Confidence 5789999993 222333 3345567777777764 58999999994
No 475
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=84.10 E-value=0.54 Score=42.74 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=17.7
Q ss_pred EEEEccCCCChHHHHHHHHH
Q 005200 470 TIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 470 ~ii~G~pG~GKT~~a~qla~ 489 (709)
++|.|.+|+|||+|+..++.
T Consensus 8 i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 67889999999999998764
No 476
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=84.01 E-value=0.74 Score=46.50 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=22.3
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
++..-++|.||||+|||.|+..+|..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 55568999999999999999987764
No 477
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=83.97 E-value=2 Score=47.59 Aligned_cols=53 Identities=11% Similarity=0.058 Sum_probs=36.6
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhc----CCeEEEEECCCC-HHHHHHHHHHH
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHA----GWKFVLCSMENK-VREHARKLLEK 518 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~----g~~Vly~SlE~~-~~~~~~Rl~~~ 518 (709)
.|.-+++.+++|+|||..+...+.+..... +.+++++..--. ..+....+...
T Consensus 21 ~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 21 NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 355689999999999988887777776642 577888876422 33444444433
No 478
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=83.97 E-value=0.5 Score=53.73 Aligned_cols=26 Identities=23% Similarity=0.297 Sum_probs=23.2
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
+.+|+++.|.|++|+|||||+.-++-
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhC
Confidence 78999999999999999999876553
No 479
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=83.80 E-value=0.56 Score=42.30 Aligned_cols=20 Identities=35% Similarity=0.368 Sum_probs=17.6
Q ss_pred EEEEccCCCChHHHHHHHHH
Q 005200 470 TIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 470 ~ii~G~pG~GKT~~a~qla~ 489 (709)
+++.|.+|+|||+|+..++.
T Consensus 6 i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68899999999999888764
No 480
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=83.76 E-value=0.57 Score=48.96 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.6
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHH
Q 005200 468 ELTIVTGVPNSGKSEWIDALICNINE 493 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~ 493 (709)
..+++.|++|+|||+++..++..+..
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhC
Confidence 36999999999999999999887753
No 481
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=83.75 E-value=0.36 Score=39.92 Aligned_cols=28 Identities=21% Similarity=0.546 Sum_probs=19.6
Q ss_pred eeeecCCCCCCCCCCCceEEEEeeCCCeeEEEEecccccc
Q 005200 140 NRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGW 179 (709)
Q Consensus 140 ~~~~CPfc~~~~~~~~s~sv~i~~~~~~~~~~Cf~~~Cg~ 179 (709)
..+.||||+.. +|... ..|+|+|.. |+.
T Consensus 35 ~ky~CpfCgk~-------~vkR~---a~GIW~C~~--C~~ 62 (92)
T 3izc_m 35 ARYDCSFCGKK-------TVKRG---AAGIWTCSC--CKK 62 (92)
T ss_dssp SCCCCSSSCSS-------CCEEE---ETTEEECTT--TCC
T ss_pred cCCcCCCCCCc-------eeeec---ccceEEcCC--CCC
Confidence 35699999863 33332 168999988 985
No 482
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=83.71 E-value=0.57 Score=42.37 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=17.5
Q ss_pred EEEEccCCCChHHHHHHHHH
Q 005200 470 TIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 470 ~ii~G~pG~GKT~~a~qla~ 489 (709)
++|.|.+|+|||+|+..+..
T Consensus 6 i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999887664
No 483
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=83.59 E-value=0.58 Score=42.21 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=17.4
Q ss_pred EEEEccCCCChHHHHHHHHH
Q 005200 470 TIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 470 ~ii~G~pG~GKT~~a~qla~ 489 (709)
++|.|.+|+|||+|+..++.
T Consensus 4 i~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68899999999999887763
No 484
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=83.29 E-value=0.47 Score=55.88 Aligned_cols=29 Identities=31% Similarity=0.316 Sum_probs=25.3
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNIN 492 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a 492 (709)
+++|.|++|+|.+|||||+|+......-.
T Consensus 33 iP~~~l~viTGvSGSGKSSLafdtl~ae~ 61 (842)
T 2vf7_A 33 VPRDALVVFTGVSGSGKSSLAFGTLYAEA 61 (842)
T ss_dssp EESSSEEEEESSTTSSHHHHHTTTHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999987665443
No 485
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=83.07 E-value=0.61 Score=44.14 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.5
Q ss_pred EEEEEccCCCChHHHHHHHHH
Q 005200 469 LTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~ 489 (709)
.++|.|++|+|||||+..++-
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 678999999999999887764
No 486
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=82.98 E-value=4.9 Score=38.95 Aligned_cols=90 Identities=23% Similarity=0.184 Sum_probs=58.3
Q ss_pred CCCeEEEEcChhhHHHHHHhCCc-eEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCcCEEEEEecCChhhHHH
Q 005200 292 GESDIIIVEGEMDKLSMEEAGFL-NCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQAL 370 (709)
Q Consensus 292 ~~~~viI~EG~~DaLsl~q~g~~-~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~~~Ivi~~DnD~aG~~a 370 (709)
..+.+.|||-..|.+++.+.+.. -..=|..|.-+..+-. =|.. +. +.+-++.+...++|||+++.+--|+..
T Consensus 78 d~~~iCVVE~~~Dv~aiE~t~~y~G~YhVLgG~lSPldGi-gP~d---L~---i~~L~~Rl~~V~EVIlAtnpTvEGEaT 150 (228)
T 1vdd_A 78 DQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGV-GPDK---LH---IKPLLPRVGQGMEVILATGTTVEGDAT 150 (228)
T ss_dssp CTTEEEEESSHHHHHHTTTTSSCCSEEEECSSCCBGGGTB-CTTT---ST---TGGGGGGCCTTCEEEECCCSSHHHHHH
T ss_pred CCCeEEEECCHHHHHHHHHhcccceEEEecCCccCcccCC-Chhh---cC---HHHHHHHhCCCCEEEEeCCCCchHHHH
Confidence 34579999999999999998742 2222334443211110 0110 01 112234445689999999999999999
Q ss_pred HHHHHHHhCCcceEEEEc
Q 005200 371 AEELARRVGRERCWRVRW 388 (709)
Q Consensus 371 a~~~a~~l~~~~~~iv~~ 388 (709)
|.-+++.|....+.+-++
T Consensus 151 A~YI~~~Lk~~~vkVTRi 168 (228)
T 1vdd_A 151 ALYLQRLLEPLGAAISRI 168 (228)
T ss_dssp HHHHHHHHTTSSCEEEEC
T ss_pred HHHHHHHHHHcCCCEEEe
Confidence 999999996656666664
No 487
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=82.96 E-value=0.63 Score=42.65 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=17.5
Q ss_pred EEEEccCCCChHHHHHHHHH
Q 005200 470 TIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 470 ~ii~G~pG~GKT~~a~qla~ 489 (709)
++|.|.+|+|||+|+..+..
T Consensus 7 i~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHC
T ss_pred EEEECCCCccHHHHHHHHhc
Confidence 68999999999999987753
No 488
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=82.96 E-value=0.53 Score=44.14 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=18.0
Q ss_pred EEEEccCCCChHHHHHHHHH
Q 005200 470 TIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 470 ~ii~G~pG~GKT~~a~qla~ 489 (709)
++|.|++|+|||+|+..++-
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999988765
No 489
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=82.92 E-value=1.8 Score=53.10 Aligned_cols=57 Identities=11% Similarity=0.027 Sum_probs=41.0
Q ss_pred cCCCc--EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHHHHHcC
Q 005200 464 VLPGE--LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIK 521 (709)
Q Consensus 464 l~~G~--L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~-~~~~~~Rl~~~~~g 521 (709)
+..|. -.++.|++|+|||..++..+..++.. |..|+++..-.. ..++..++.....+
T Consensus 619 ~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-g~~vlvlvPt~~La~Q~~~~~~~~~~~ 678 (1151)
T 2eyq_A 619 MCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-HKQVAVLVPTTLLAQQHYDNFRDRFAN 678 (1151)
T ss_dssp HHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred HhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-CCeEEEEechHHHHHHHHHHHHHHhhc
Confidence 33455 89999999999999888777776665 889999985432 45566666554443
No 490
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=82.83 E-value=0.65 Score=42.31 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=17.5
Q ss_pred EEEEccCCCChHHHHHHHHH
Q 005200 470 TIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 470 ~ii~G~pG~GKT~~a~qla~ 489 (709)
++|.|.+|+|||+|+..++.
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68899999999999987764
No 491
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=82.82 E-value=0.65 Score=42.02 Aligned_cols=20 Identities=25% Similarity=0.327 Sum_probs=17.5
Q ss_pred EEEEccCCCChHHHHHHHHH
Q 005200 470 TIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 470 ~ii~G~pG~GKT~~a~qla~ 489 (709)
++|.|.+|+|||+|+..+..
T Consensus 7 i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68899999999999887764
No 492
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=82.74 E-value=0.91 Score=53.11 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=30.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
-++|.|+||+|||++|..++..+... +.+++++++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~-~~~~i~i~~s 558 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGD-EESMIRIDMS 558 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSC-TTCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC-CcceEEEech
Confidence 59999999999999999988877554 7888888764
No 493
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=82.68 E-value=0.53 Score=52.74 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=22.8
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHH
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
..+|+++.|.|++|+||||++.-++-
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhc
Confidence 67899999999999999999875553
No 494
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=82.67 E-value=1.4 Score=42.14 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=29.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005200 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
+++|-|.-|+||||.+..++..+... |.+|++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~-g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR-GKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEE
Confidence 67889999999999999998888776 99987765
No 495
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=82.64 E-value=1.6 Score=48.35 Aligned_cols=52 Identities=15% Similarity=0.051 Sum_probs=36.7
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhc----CCeEEEEECCCC-HHHHHHHHHH
Q 005200 466 PGELTIVTGVPNSGKSEWIDALICNINEHA----GWKFVLCSMENK-VREHARKLLE 517 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~----g~~Vly~SlE~~-~~~~~~Rl~~ 517 (709)
.|.-+++.+++|+|||..+...+.+..... +.++++++.--. ..+....+..
T Consensus 18 ~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 74 (555)
T 3tbk_A 18 KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSR 74 (555)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 456789999999999988888887776653 677888876522 3344444433
No 496
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=82.64 E-value=2.4 Score=48.73 Aligned_cols=42 Identities=17% Similarity=0.085 Sum_probs=32.4
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcC----CeEEEEECC
Q 005200 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG----WKFVLCSME 505 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g----~~Vly~SlE 505 (709)
+..|.-+++++++|+|||..+...+.+.....+ .++++++.-
T Consensus 25 ~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt 70 (696)
T 2ykg_A 25 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQ 70 (696)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSS
T ss_pred HHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECC
Confidence 334677999999999999988888877665422 678888764
No 497
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=82.63 E-value=0.66 Score=42.20 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=17.6
Q ss_pred EEEEccCCCChHHHHHHHHH
Q 005200 470 TIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 470 ~ii~G~pG~GKT~~a~qla~ 489 (709)
++|.|.+|+|||+|+..+..
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 67899999999999988763
No 498
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=82.57 E-value=0.71 Score=50.73 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=22.9
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHH
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINE 493 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~ 493 (709)
..-++|.|+||+|||+++..++..+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 345689999999999999999888754
No 499
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=82.56 E-value=0.95 Score=49.72 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=30.7
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005200 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
.-++++.|.||+||||++..++...-.. +.++..++.+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d 76 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVG 76 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecc
Confidence 3589999999999999999999887654 6676666544
No 500
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=82.56 E-value=2.3 Score=51.11 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=36.6
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHH--HHHhcCCeEEEEECCCC--HHHHHHHHHH
Q 005200 465 LPGELTIVTGVPNSGKSEWIDALICN--INEHAGWKFVLCSMENK--VREHARKLLE 517 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~--~a~~~g~~Vly~SlE~~--~~~~~~Rl~~ 517 (709)
....++.|.|++|+||||+|.+++.+ +...-...++|+++... ...+...+..
T Consensus 148 d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 34569999999999999999998854 23222456889888643 3444444433
Done!