Query 005202
Match_columns 709
No_of_seqs 394 out of 1337
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 19:43:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05497 Bromo_Brdt_I_like Brom 99.9 5.4E-25 1.2E-29 201.0 11.6 101 170-270 5-107 (107)
2 cd05496 Bromo_WDR9_II Bromodom 99.9 6.1E-25 1.3E-29 204.3 11.6 105 169-273 4-109 (119)
3 cd05495 Bromo_cbp_like Bromodo 99.9 8.8E-25 1.9E-29 199.8 12.2 103 169-271 2-107 (108)
4 cd05505 Bromo_WSTF_like Bromod 99.9 7.4E-25 1.6E-29 196.9 10.4 95 172-266 2-96 (97)
5 cd05507 Bromo_brd8_like Bromod 99.9 1.3E-24 2.9E-29 197.2 11.2 101 170-270 3-103 (104)
6 cd05508 Bromo_RACK7 Bromodomai 99.9 1.9E-24 4.2E-29 195.0 10.7 96 170-266 3-98 (99)
7 cd05504 Bromo_Acf1_like Bromod 99.9 3.3E-24 7.1E-29 198.2 12.3 105 167-271 9-113 (115)
8 cd05509 Bromo_gcn5_like Bromod 99.9 2.9E-24 6.3E-29 193.2 10.9 101 170-270 1-101 (101)
9 cd05503 Bromo_BAZ2A_B_like Bro 99.9 3.2E-24 7E-29 192.3 10.3 96 172-267 2-97 (97)
10 cd05510 Bromo_SPT7_like Bromod 99.9 5.1E-24 1.1E-28 196.2 11.4 104 169-272 6-111 (112)
11 cd05513 Bromo_brd7_like Bromod 99.9 4.1E-24 8.9E-29 192.5 10.1 96 170-265 1-96 (98)
12 cd05512 Bromo_brd1_like Bromod 99.9 5.7E-24 1.2E-28 191.4 9.2 95 170-264 1-95 (98)
13 KOG0955 PHD finger protein BR1 99.9 1.2E-23 2.6E-28 248.6 14.3 295 167-479 562-873 (1051)
14 cd05502 Bromo_tif1_like Bromod 99.9 1.7E-23 3.6E-28 191.2 12.1 102 170-272 4-108 (109)
15 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.9E-23 4.2E-28 190.7 10.5 100 171-270 2-107 (107)
16 cd05511 Bromo_TFIID Bromodomai 99.9 2.7E-23 5.7E-28 191.2 10.7 103 172-274 2-104 (112)
17 cd05506 Bromo_plant1 Bromodoma 99.9 3E-23 6.6E-28 185.8 10.4 96 172-267 2-99 (99)
18 KOG1474 Transcription initiati 99.9 2.8E-23 6E-28 239.3 12.2 111 167-277 219-331 (640)
19 cd05528 Bromo_AAA Bromodomain; 99.9 5E-23 1.1E-27 189.6 11.5 102 170-271 3-108 (112)
20 cd05499 Bromo_BDF1_2_II Bromod 99.9 4E-23 8.6E-28 186.4 10.5 96 172-267 2-102 (102)
21 cd05498 Bromo_Brdt_II_like Bro 99.9 6E-23 1.3E-27 185.0 10.4 96 172-267 2-102 (102)
22 cd05500 Bromo_BDF1_2_I Bromodo 99.9 8.9E-23 1.9E-27 184.7 10.9 97 170-266 4-102 (103)
23 cd05501 Bromo_SP100C_like Brom 99.9 2E-22 4.3E-27 182.9 12.1 98 172-272 4-101 (102)
24 cd05519 Bromo_SNF2 Bromodomain 99.9 1.6E-22 3.4E-27 183.1 9.9 96 172-267 2-103 (103)
25 cd05524 Bromo_polybromo_I Brom 99.9 2.3E-22 4.9E-27 185.4 10.8 102 172-273 4-111 (113)
26 cd05515 Bromo_polybromo_V Brom 99.9 2.9E-22 6.2E-27 182.3 9.9 97 172-268 2-104 (105)
27 cd05517 Bromo_polybromo_II Bro 99.9 4.5E-22 9.8E-27 180.7 9.9 94 172-265 2-101 (103)
28 cd05525 Bromo_ASH1 Bromodomain 99.9 6.4E-22 1.4E-26 180.7 10.7 96 171-266 3-104 (106)
29 smart00297 BROMO bromo domain. 99.9 1E-21 2.3E-26 176.1 11.2 102 169-270 6-107 (107)
30 cd05520 Bromo_polybromo_III Br 99.9 6.6E-22 1.4E-26 179.6 9.6 81 186-266 22-102 (103)
31 cd05518 Bromo_polybromo_IV Bro 99.9 7.3E-22 1.6E-26 179.4 9.6 93 173-265 3-101 (103)
32 cd05529 Bromo_WDR9_I_like Brom 99.9 2.1E-21 4.5E-26 182.6 12.6 103 167-269 21-127 (128)
33 cd05522 Bromo_Rsc1_2_II Bromod 99.8 6.8E-21 1.5E-25 173.1 10.0 96 171-266 2-103 (104)
34 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 1.4E-20 3E-25 172.0 10.2 96 171-268 2-103 (106)
35 cd04369 Bromodomain Bromodomai 99.8 2.1E-20 4.6E-25 162.1 9.1 96 172-267 2-99 (99)
36 PF00439 Bromodomain: Bromodom 99.8 2E-20 4.3E-25 161.0 8.7 84 175-258 1-84 (84)
37 cd05492 Bromo_ZMYND11 Bromodom 99.8 1.8E-19 3.9E-24 165.5 11.1 99 173-271 3-107 (109)
38 cd05526 Bromo_polybromo_VI Bro 99.7 8E-18 1.7E-22 154.7 10.6 100 171-272 4-109 (110)
39 COG5076 Transcription factor i 99.7 9.5E-17 2.1E-21 174.6 10.2 90 186-275 164-253 (371)
40 KOG1245 Chromatin remodeling c 99.6 6E-16 1.3E-20 189.7 7.5 96 175-271 1306-1401(1404)
41 KOG0386 Chromatin remodeling c 99.4 3.4E-13 7.3E-18 157.6 8.3 102 173-274 1027-1134(1157)
42 KOG1472 Histone acetyltransfer 99.4 4.7E-13 1E-17 154.2 6.2 102 170-271 606-707 (720)
43 cd05494 Bromodomain_1 Bromodom 99.0 1.7E-10 3.7E-15 107.1 3.9 78 171-248 4-90 (114)
44 KOG1827 Chromatin remodeling c 99.0 7.5E-10 1.6E-14 126.5 8.7 105 164-268 46-156 (629)
45 KOG0008 Transcription initiati 98.9 1.9E-09 4E-14 129.3 5.6 94 177-270 1389-1482(1563)
46 cd05491 Bromo_TBP7_like Bromod 98.9 1.8E-09 4E-14 100.6 4.2 42 208-249 62-103 (119)
47 KOG0008 Transcription initiati 98.6 5.5E-08 1.2E-12 117.1 7.0 98 171-268 1262-1359(1563)
48 KOG1472 Histone acetyltransfer 98.4 2E-07 4.3E-12 108.6 4.7 68 184-251 300-367 (720)
49 KOG1828 IRF-2-binding protein 98.3 6.4E-08 1.4E-12 104.8 -0.9 99 170-268 19-117 (418)
50 KOG1828 IRF-2-binding protein 98.2 6.6E-07 1.4E-11 97.2 3.9 90 171-261 209-298 (418)
51 KOG1474 Transcription initiati 98.2 3.7E-07 8.1E-12 106.6 1.0 96 182-277 4-101 (640)
52 PF12024 DUF3512: Domain of un 97.4 7.8E-05 1.7E-09 77.6 2.3 83 375-457 88-184 (245)
53 COG5076 Transcription factor i 96.5 0.0007 1.5E-08 74.5 0.6 90 183-272 276-365 (371)
54 cd05493 Bromo_ALL-1 Bromodomai 95.7 0.02 4.3E-07 55.1 5.6 69 210-278 59-127 (131)
55 KOG0644 Uncharacterized conser 87.5 0.48 1E-05 57.0 3.6 62 203-264 1046-1107(1113)
56 KOG0732 AAA+-type ATPase conta 83.9 0.73 1.6E-05 57.2 2.9 63 187-249 532-601 (1080)
57 KOG1827 Chromatin remodeling c 71.1 0.89 1.9E-05 53.7 -1.4 75 188-262 213-287 (629)
58 KOG0066 eIF2-interacting prote 61.2 7.3 0.00016 44.9 3.3 22 203-224 293-314 (807)
59 KOG0644 Uncharacterized conser 54.5 6.2 0.00013 48.1 1.4 73 192-265 87-189 (1113)
60 PF14619 SnAC: Snf2-ATP coupli 41.7 12 0.00025 32.7 0.8 18 70-87 53-70 (74)
61 PF14372 DUF4413: Domain of un 29.7 1.5E+02 0.0034 26.9 6.1 48 223-270 4-51 (101)
62 smart00412 Cu_FIST Copper-Fist 26.5 28 0.0006 27.3 0.6 9 8-16 31-39 (39)
63 TIGR02606 antidote_CC2985 puta 23.5 1.2E+02 0.0026 26.1 4.0 27 214-240 12-38 (69)
64 PF08403 AA_permease_N: Amino 23.5 45 0.00097 29.5 1.3 15 9-23 35-49 (74)
No 1
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=5.4e-25 Score=201.01 Aligned_cols=101 Identities=29% Similarity=0.466 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcC--CCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCC
Q 005202 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 247 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~s~~F~ePVd~~--~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~ 247 (709)
+++-++..||+.|++++.+++|.+|||+. .+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45667789999999999999999999987 5999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh
Q 005202 248 PDTIYFRQARSIHELAKKNFENL 270 (709)
Q Consensus 248 ~dS~Vyk~A~~Le~~fek~~eeL 270 (709)
++|.||.+|..|++.|++.++++
T Consensus 85 ~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 85 PGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999998764
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=6.1e-25 Score=204.31 Aligned_cols=105 Identities=29% Similarity=0.448 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCC
Q 005202 169 LPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248 (709)
Q Consensus 169 ~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~ 248 (709)
..|++.|..||+.|++++.+++|++|||+..+||||++|++||||+||++||.++.|.++++|..||+|||.||++||++
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~ 83 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPN 83 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred -CCHHHHHHHHHHHHHHHHHHhhhcC
Q 005202 249 -DTIYFRQARSIHELAKKNFENLRQD 273 (709)
Q Consensus 249 -dS~Vyk~A~~Le~~fek~~eeL~~~ 273 (709)
++.||.+|..|+..|++.+.+|...
T Consensus 84 ~~s~i~~~a~~L~~~F~~~~~~l~~~ 109 (119)
T cd05496 84 KRSRIYSMTLRLSALFEEHIKKIISD 109 (119)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988664
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=8.8e-25 Score=199.85 Aligned_cols=103 Identities=29% Similarity=0.551 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHHcC-CCCCCCCCCCCcC--CCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcc
Q 005202 169 LPDKKLLLFILDRLQKK-DTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQY 245 (709)
Q Consensus 169 ~p~kklL~~ILe~L~k~-~~s~~F~ePVd~~--~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~Y 245 (709)
..+++.|..|+++|+++ +.+++|.+||++. .+||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999 9999999999988 59999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhh
Q 005202 246 NAPDTIYFRQARSIHELAKKNFENLR 271 (709)
Q Consensus 246 N~~dS~Vyk~A~~Le~~fek~~eeL~ 271 (709)
|+++|.+|++|..|++.|++.+..+.
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998764
No 4
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=7.4e-25 Score=196.94 Aligned_cols=95 Identities=28% Similarity=0.399 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCCH
Q 005202 172 KKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 251 (709)
Q Consensus 172 kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS~ 251 (709)
.+.|..||+.|++++.+++|..||++..+||||++|++||||+||++||+++.|.++++|.+||.|||.||+.||++++.
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSY 81 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 005202 252 YFRQARSIHELAKKN 266 (709)
Q Consensus 252 Vyk~A~~Le~~fek~ 266 (709)
|+.+|..|++.|...
T Consensus 82 i~~~a~~le~~f~~~ 96 (97)
T cd05505 82 VLSCMRKTEQCCVNL 96 (97)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
No 5
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.3e-24 Score=197.21 Aligned_cols=101 Identities=28% Similarity=0.501 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 005202 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~d 249 (709)
.|++.|..|++.|.+++.+++|.+||+...+||||++|++||||+||++||+++.|.++++|.+||.|||.||++||+++
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 82 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSD 82 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhh
Q 005202 250 TIYFRQARSIHELAKKNFENL 270 (709)
Q Consensus 250 S~Vyk~A~~Le~~fek~~eeL 270 (709)
+.||.+|..|++.|.+.++.+
T Consensus 83 s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 83 HDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999988754
No 6
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.9e-24 Score=195.01 Aligned_cols=96 Identities=31% Similarity=0.525 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 005202 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~d 249 (709)
++..+|+.+++.|+ ++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||+++
T Consensus 3 ~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~ 81 (99)
T cd05508 3 QLSKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGD 81 (99)
T ss_pred HHHHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46788999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 005202 250 TIYFRQARSIHELAKKN 266 (709)
Q Consensus 250 S~Vyk~A~~Le~~fek~ 266 (709)
|.++.+|+.|.+.|+..
T Consensus 82 s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 82 HKLTQAAKAIVKICEQE 98 (99)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999998764
No 7
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.3e-24 Score=198.18 Aligned_cols=105 Identities=30% Similarity=0.476 Sum_probs=100.4
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccC
Q 005202 167 TPLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 246 (709)
Q Consensus 167 t~~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN 246 (709)
........|..||+.|++++.+++|..||+...+||||++|++||||+||++||+++.|.++++|+.||.|||.||++||
T Consensus 9 ~~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN 88 (115)
T cd05504 9 HGPLNLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYN 88 (115)
T ss_pred CCHHHHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhh
Q 005202 247 APDTIYFRQARSIHELAKKNFENLR 271 (709)
Q Consensus 247 ~~dS~Vyk~A~~Le~~fek~~eeL~ 271 (709)
+++|.+|++|..|+..|++.++++.
T Consensus 89 ~~~s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 89 PEHTSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999874
No 8
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.9e-24 Score=193.18 Aligned_cols=101 Identities=43% Similarity=0.664 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 005202 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~d 249 (709)
|+.+.|..|++.|++++.+++|.+||++..+|+||++|++||||.+|++||+++.|.++++|..||+|||.||+.||+++
T Consensus 1 ~~~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 80 (101)
T cd05509 1 PLYTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPD 80 (101)
T ss_pred ChHHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhh
Q 005202 250 TIYFRQARSIHELAKKNFENL 270 (709)
Q Consensus 250 S~Vyk~A~~Le~~fek~~eeL 270 (709)
+.++.+|..|+..|++.++++
T Consensus 81 s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 81 TEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999874
No 9
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.2e-24 Score=192.26 Aligned_cols=96 Identities=34% Similarity=0.585 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCCH
Q 005202 172 KKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 251 (709)
Q Consensus 172 kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS~ 251 (709)
...|+.||+.|.+++.+++|+.||++..+|+||++|++||||+||++||+++.|.++++|..||+|||.||+.||++++.
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSE 81 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 005202 252 YFRQARSIHELAKKNF 267 (709)
Q Consensus 252 Vyk~A~~Le~~fek~~ 267 (709)
++++|..|++.|++.|
T Consensus 82 i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 82 VGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999865
No 10
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=5.1e-24 Score=196.20 Aligned_cols=104 Identities=28% Similarity=0.390 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHHHcC-CCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCC
Q 005202 169 LPDKKLLLFILDRLQKK-DTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 247 (709)
Q Consensus 169 ~p~kklL~~ILe~L~k~-~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~ 247 (709)
.++.+.|..||+.|+++ +.+++|..||++..+||||++|++||||+||++||+++.|.++++|.+||.|||.||+.||+
T Consensus 6 ~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN~ 85 (112)
T cd05510 6 EEFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYNS 85 (112)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46788999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-HHHHHHHHHHHHHHHHHHhhhc
Q 005202 248 PDT-IYFRQARSIHELAKKNFENLRQ 272 (709)
Q Consensus 248 ~dS-~Vyk~A~~Le~~fek~~eeL~~ 272 (709)
+++ .++++|..|++.|++.+..|+.
T Consensus 86 ~~s~~~~~~A~~l~~~~~~~~~~~~~ 111 (112)
T cd05510 86 DPSHPLRRHANFMKKKAEHLLKLIPD 111 (112)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 765 7889999999999999998864
No 11
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=4.1e-24 Score=192.55 Aligned_cols=96 Identities=42% Similarity=0.771 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 005202 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~d 249 (709)
|++++|..|++.|++++.+++|..||+...+||||++|++||||+||++||+++.|.++++|++||+|||.||+.||+++
T Consensus 1 ~l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 80 (98)
T cd05513 1 PLQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPD 80 (98)
T ss_pred CHHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 005202 250 TIYFRQARSIHELAKK 265 (709)
Q Consensus 250 S~Vyk~A~~Le~~fek 265 (709)
|.+|++|..|.+...+
T Consensus 81 s~~~~~A~~L~~~~~~ 96 (98)
T cd05513 81 TIYYKAAKKLLHSGMK 96 (98)
T ss_pred CHHHHHHHHHHHhhhh
Confidence 9999999999876654
No 12
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=5.7e-24 Score=191.44 Aligned_cols=95 Identities=49% Similarity=0.770 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 005202 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~d 249 (709)
|+..+|+.+|+.|..++.+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+++
T Consensus 1 p~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 80 (98)
T cd05512 1 PLEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKD 80 (98)
T ss_pred CHHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 005202 250 TIYFRQARSIHELAK 264 (709)
Q Consensus 250 S~Vyk~A~~Le~~fe 264 (709)
+.+|++|..|++...
T Consensus 81 s~~~~~A~~l~~~~~ 95 (98)
T cd05512 81 TIFYRAAVRLRDQGG 95 (98)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999987654
No 13
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.90 E-value=1.2e-23 Score=248.55 Aligned_cols=295 Identities=31% Similarity=0.377 Sum_probs=211.8
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccC
Q 005202 167 TPLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 246 (709)
Q Consensus 167 t~~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN 246 (709)
...+++++|+.+++.|++.+..++|..|||+.++|||+++|++||||.+|+.++..+.|.++++|++|+.||+.||+.||
T Consensus 562 ~l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn 641 (1051)
T KOG0955|consen 562 GLNPFKKLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYN 641 (1051)
T ss_pred cCchHHHHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhh
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCC-ccc--------ccccCCCCCCCCCCCCCCCCcccccCCCCCCccccc
Q 005202 247 APDTIYFRQARSIHELAKKNFENLRQDSDDNE-PET--------KVVRRGRPPTKNFKKPLGRPSLERARSDFSSDVTLA 317 (709)
Q Consensus 247 ~~dS~Vyk~A~~Le~~fek~~eeL~~~~e~eE-p~p--------k~~r~~r~p~k~~Kk~l~r~s~e~a~s~~SS~atlA 317 (709)
..++.+|++|..+++...+.+.+++.+.+.+. .+. .+....++.......+.............+....++
T Consensus 642 ~~dtv~~r~av~~~e~~~~~~~~arke~e~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~e~~~~~~~e~~~~ 721 (1051)
T KOG0955|consen 642 AKDTVYYRAAVRLRELIKKDFRNARKEPESEGLLDRESLSHHDHLVKKLERPYRPNLWAPEEPQVDLETFINLSKEHDLK 721 (1051)
T ss_pred ccCeehHhhhHHHHhhhhhHHHhcccchhhhcccchhhhcccchhhhhhccCCccccccccccccccccccccChhhhhc
Confidence 99999999999999999999999988765543 111 112222333222232222222222223333222222
Q ss_pred cCCCCccccccCCCCCCCCCCCCCCCCCccccCCCCCCCCcchhhhccccccc------cc--cccccccccCCCccccc
Q 005202 318 SGAENTALTNRDLGNGTPHLEKSGFTDSSRRFSGSWNDLYTGCLAENKLERND------EV--SLSKGYSMKHGKKQVVL 389 (709)
Q Consensus 318 ~~~~~~~~~~~d~r~~~~~~~~~~~~~~~R~~h~pk~~~~~~~~~~kKl~~el------~f--evl~~l~~K~g~k~~~~ 389 (709)
...+... +...+..+..+..+ +....+ -.+..+++...+- .+ .+.++. .|+|++-
T Consensus 722 ~~~~~~~------~~~a~~~~~~~~~~---~~~~~~----~~s~~r~~~~~~~e~~~~~~~p~~~~~~~-~~~~~~~--- 784 (1051)
T KOG0955|consen 722 IPLDKNE------KKKATKLSIPRNRD---SRIIRK----EKSRLRKCGIVDTETSGSPSIPSGGEKTV-KKDGLNS--- 784 (1051)
T ss_pred cccccch------hhhhhhcccccccc---cccchh----hHHHHhhccCcCccccCCCCCCCccccch-hcccccc---
Confidence 2111110 00011111111111 100000 0001122211111 11 112334 5566554
Q ss_pred ccccccccccccccccCCCceeccccCcceeEEeccCCchhhHHHHHHHHHhhChHHHHHHHHHHhhhcCCCCCcCCccc
Q 005202 390 DENRRNTYKQFHQSLRESSVLTTFDADKKQLMTVGLHSEHGYTRSLARFAANLGPVAWKIAARRIERCLPAGVRFGPGWV 469 (709)
Q Consensus 390 de~rR~ty~~~~~~~~~~~v~~~~~~~~k~Lv~vg~~~e~~yarSLarF~a~lGp~~w~ia~~ri~~~lp~~~~fg~gwv 469 (709)
.+++.+|.+..++-.++++++.+..+.+++-|+++..+.+|++|+++.+++.+++||.+|+.+++..++.+..||.||+
T Consensus 785 -~~~~~~~~~~~s~p~~~~~~sp~~~~~~~~~p~~l~~~s~~~~sn~~l~~n~t~~~~~~~~~~~~~~~~~~~~~g~g~~ 863 (1051)
T KOG0955|consen 785 -KNLKMSSDQALSSPPSEPLGSPYNDSVKGVKPSVLLEKSGLLRSNANLSQNPTASANNLASTSCSVTKATFTGNGVGGD 863 (1051)
T ss_pred -cccccccchhhcCCCCCCCCCCccccccccCchhhHhhccccccccccccCCCcccccccccccccccCCccCCCCCcc
Confidence 7899999998777899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCC
Q 005202 470 VENDLAPQRP 479 (709)
Q Consensus 470 ge~~~~~~~~ 479 (709)
++.+..+--+
T Consensus 864 ~~tP~~~~e~ 873 (1051)
T KOG0955|consen 864 VKTPKRPSEP 873 (1051)
T ss_pred ccCCCCcCCc
Confidence 8877766544
No 14
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.7e-23 Score=191.22 Aligned_cols=102 Identities=25% Similarity=0.449 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhccC
Q 005202 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLAN---GAYATLEQFEKDVFLICSNAMQYN 246 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~---g~Y~Sv~eF~~DV~LIFsNA~~YN 246 (709)
..++.|..||..|++++.+++|.+||++ .+|+||++|++||||+||++||++ +.|.++++|.+||+|||.||+.||
T Consensus 4 ~~~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN 82 (109)
T cd05502 4 IDQRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFN 82 (109)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3578899999999999999999999999 899999999999999999999998 599999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhc
Q 005202 247 APDTIYFRQARSIHELAKKNFENLRQ 272 (709)
Q Consensus 247 ~~dS~Vyk~A~~Le~~fek~~eeL~~ 272 (709)
+++|.++.+|..|+..|++.+.++..
T Consensus 83 ~~~s~i~~~a~~l~~~f~~~~~~~~p 108 (109)
T cd05502 83 EEDSEVAQAGKELELFFEEQLKEILP 108 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCc
Confidence 99999999999999999999998754
No 15
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=1.9e-23 Score=190.67 Aligned_cols=100 Identities=29% Similarity=0.534 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhc
Q 005202 171 DKKLLLFILDRLQKKDT------YGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (709)
Q Consensus 171 ~kklL~~ILe~L~k~~~------s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~ 244 (709)
+.+.|..||+.|.++.+ +++|.+||+...+||||++|++||||++|++||+++.|.++++|..||.|||.||+.
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQT 81 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 46778999999998876 789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhh
Q 005202 245 YNAPDTIYFRQARSIHELAKKNFENL 270 (709)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~~eeL 270 (709)
||+++|.||.+|..|++.|++.++++
T Consensus 82 yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 82 FNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999988764
No 16
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.7e-23 Score=191.25 Aligned_cols=103 Identities=31% Similarity=0.577 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCCH
Q 005202 172 KKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 251 (709)
Q Consensus 172 kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS~ 251 (709)
..+|+.|+++|++++.+.+|..||++..+|+||++|++||||++|++||+++.|.++++|.+||+|||.||+.||+++|.
T Consensus 2 ~~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 81 (112)
T cd05511 2 SFILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSV 81 (112)
T ss_pred HHHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Q 005202 252 YFRQARSIHELAKKNFENLRQDS 274 (709)
Q Consensus 252 Vyk~A~~Le~~fek~~eeL~~~~ 274 (709)
++.+|..|...|++.+++++...
T Consensus 82 i~~~A~~l~~~~~~~~~~~~~~~ 104 (112)
T cd05511 82 YTKKAKEMLELAEELLAEREEKL 104 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999987643
No 17
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3e-23 Score=185.79 Aligned_cols=96 Identities=38% Similarity=0.595 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcC--CCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 005202 172 KKLLLFILDRLQKKDTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (709)
Q Consensus 172 kklL~~ILe~L~k~~~s~~F~ePVd~~--~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~d 249 (709)
.+.|..||+.|++++.+++|..||++. .+|+||++|++||||+||++||+++.|.++++|..||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 567999999999999999999999977 599999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 005202 250 TIYFRQARSIHELAKKNF 267 (709)
Q Consensus 250 S~Vyk~A~~Le~~fek~~ 267 (709)
|.+|.+|..|+..|++.|
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999875
No 18
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.89 E-value=2.8e-23 Score=239.30 Aligned_cols=111 Identities=34% Similarity=0.588 Sum_probs=105.1
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCCCCCCcCC--CCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhc
Q 005202 167 TPLPDKKLLLFILDRLQKKDTYGVFSEPVDPEE--LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (709)
Q Consensus 167 t~~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~--~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~ 244 (709)
....+.+.|..||..|++|+.+|+|..|||+.. +||||+||++||||+||++||.++.|.++.+|.+||+|||.||++
T Consensus 219 ~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~ 298 (640)
T KOG1474|consen 219 LTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMT 298 (640)
T ss_pred ccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHh
Confidence 456778999999999999999999999999985 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 005202 245 YNAPDTIYFRQARSIHELAKKNFENLRQDSDDN 277 (709)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~~eeL~~~~e~e 277 (709)
||.++++||.+|..|+++|+..|+.++...+..
T Consensus 299 YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~ 331 (640)
T KOG1474|consen 299 YNPEGSDVYAMAKKLQEVFEERWASMPLEIEES 331 (640)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 999999999999999999999999988866544
No 19
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.89 E-value=5e-23 Score=189.60 Aligned_cols=102 Identities=33% Similarity=0.541 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 005202 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~d 249 (709)
+++.+|+.|+++|+.++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||+++
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~ 82 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDR 82 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred ----CHHHHHHHHHHHHHHHHHHhhh
Q 005202 250 ----TIYFRQARSIHELAKKNFENLR 271 (709)
Q Consensus 250 ----S~Vyk~A~~Le~~fek~~eeL~ 271 (709)
+.|+.+|..|++.|.+.++++.
T Consensus 83 s~~~s~i~~~A~~L~~~~~~~~~~~~ 108 (112)
T cd05528 83 DPADKLIRSRACELRDEVHAMIEAEL 108 (112)
T ss_pred CccccHHHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999998764
No 20
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=4e-23 Score=186.42 Aligned_cols=96 Identities=33% Similarity=0.587 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCCCcC--CCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccC
Q 005202 172 KKLLLFILDRLQKK---DTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 246 (709)
Q Consensus 172 kklL~~ILe~L~k~---~~s~~F~ePVd~~--~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN 246 (709)
.+.|..||..|+++ +.+++|++||++. .+||||++|++||||++|++||+++.|.++++|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46799999999984 5789999999998 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 005202 247 APDTIYFRQARSIHELAKKNF 267 (709)
Q Consensus 247 ~~dS~Vyk~A~~Le~~fek~~ 267 (709)
+++|.++.+|..|+..|++.|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999865
No 21
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=6e-23 Score=184.96 Aligned_cols=96 Identities=39% Similarity=0.604 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCCCCcC--CCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccC
Q 005202 172 KKLLLFILDRLQKK---DTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 246 (709)
Q Consensus 172 kklL~~ILe~L~k~---~~s~~F~ePVd~~--~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN 246 (709)
++.|..||+.|+++ +.+++|.+||++. .+||||++|++||||++|++||+++.|.++++|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 56799999999999 7899999999987 499999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 005202 247 APDTIYFRQARSIHELAKKNF 267 (709)
Q Consensus 247 ~~dS~Vyk~A~~Le~~fek~~ 267 (709)
+++|.++.+|..|++.|++.|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999875
No 22
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=8.9e-23 Score=184.70 Aligned_cols=97 Identities=29% Similarity=0.564 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcC--CCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCC
Q 005202 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 247 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~s~~F~ePVd~~--~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~ 247 (709)
...+.|..||+.|++++.+++|..||++. .+||||++|++||||++|++||+++.|.++.+|..||+|||.||+.||+
T Consensus 4 ~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 83 (103)
T cd05500 4 HQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNG 83 (103)
T ss_pred HHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35788999999999999999999999976 5999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 005202 248 PDTIYFRQARSIHELAKKN 266 (709)
Q Consensus 248 ~dS~Vyk~A~~Le~~fek~ 266 (709)
++|.++.+|..|+..|++.
T Consensus 84 ~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 84 PEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 23
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=2e-22 Score=182.89 Aligned_cols=98 Identities=26% Similarity=0.386 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCCH
Q 005202 172 KKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 251 (709)
Q Consensus 172 kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS~ 251 (709)
.+.|+.||..|.++..+++|..+ +..+||||++|++||||+||++||.++.|.++++|.+||+|||.||++||+++ .
T Consensus 4 l~~ce~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~ 80 (102)
T cd05501 4 LLKCEFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD-D 80 (102)
T ss_pred HHHHHHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-H
Confidence 45699999999999999999663 45899999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 005202 252 YFRQARSIHELAKKNFENLRQ 272 (709)
Q Consensus 252 Vyk~A~~Le~~fek~~eeL~~ 272 (709)
++.+|..|++.|++.|+++..
T Consensus 81 ~~~~a~~L~~~Fek~~~~~f~ 101 (102)
T cd05501 81 FGQVGITLEKKFEKNFKEVFA 101 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998754
No 24
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.6e-22 Score=183.08 Aligned_cols=96 Identities=27% Similarity=0.488 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHcC------CCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcc
Q 005202 172 KKLLLFILDRLQKK------DTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQY 245 (709)
Q Consensus 172 kklL~~ILe~L~k~------~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~Y 245 (709)
++.|..|++.|..+ ..+++|.+||+...+||||++|++||||++|++||+.+.|.++.+|..||+|||.||+.|
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTY 81 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 67899999999854 457799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 005202 246 NAPDTIYFRQARSIHELAKKNF 267 (709)
Q Consensus 246 N~~dS~Vyk~A~~Le~~fek~~ 267 (709)
|++++.+|.+|..|++.|++.|
T Consensus 82 n~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 82 NQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=2.3e-22 Score=185.44 Aligned_cols=102 Identities=21% Similarity=0.332 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcCC------CCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcc
Q 005202 172 KKLLLFILDRLQKKD------TYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQY 245 (709)
Q Consensus 172 kklL~~ILe~L~k~~------~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~Y 245 (709)
.+.|..|++.|+++. .+.+|..+|+...+||||++|++||||+||++||+++.|.++++|..||.|||+||+.|
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 83 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 577999999999754 34589999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q 005202 246 NAPDTIYFRQARSIHELAKKNFENLRQD 273 (709)
Q Consensus 246 N~~dS~Vyk~A~~Le~~fek~~eeL~~~ 273 (709)
|+++|.+|++|..|++.|++.+.++...
T Consensus 84 N~~~s~~~~~A~~L~~~f~~~~~~~~~~ 111 (113)
T cd05524 84 YKPDSPEHKDACKLWELFLSARNEVLSG 111 (113)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999988764
No 26
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=2.9e-22 Score=182.31 Aligned_cols=97 Identities=24% Similarity=0.483 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCC------CCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcc
Q 005202 172 KKLLLFILDRLQKKD------TYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQY 245 (709)
Q Consensus 172 kklL~~ILe~L~k~~------~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~Y 245 (709)
++.|..|++.|..+. .+++|..||+..++||||++|++||||++|++||+++.|.++++|+.||.|||.||++|
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 456788888887653 56799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 005202 246 NAPDTIYFRQARSIHELAKKNFE 268 (709)
Q Consensus 246 N~~dS~Vyk~A~~Le~~fek~~e 268 (709)
|+++|.+|.+|..|+..|.+...
T Consensus 82 N~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 82 NEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999987653
No 27
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=4.5e-22 Score=180.67 Aligned_cols=94 Identities=27% Similarity=0.520 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHcCCC------CCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcc
Q 005202 172 KKLLLFILDRLQKKDT------YGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQY 245 (709)
Q Consensus 172 kklL~~ILe~L~k~~~------s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~Y 245 (709)
++.|+.|++.|..+.+ +++|..+|++..+||||++|++||||++|++||+.+.|.++.+|..||.|||.||+.|
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTF 81 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5678888888887654 4799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 005202 246 NAPDTIYFRQARSIHELAKK 265 (709)
Q Consensus 246 N~~dS~Vyk~A~~Le~~fek 265 (709)
|+++|.||.+|..|++.|+.
T Consensus 82 N~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 82 NEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 28
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=6.4e-22 Score=180.67 Aligned_cols=96 Identities=23% Similarity=0.310 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhc
Q 005202 171 DKKLLLFILDRLQKKD------TYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (709)
Q Consensus 171 ~kklL~~ILe~L~k~~------~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~ 244 (709)
+.+.|+.||+.|..+. .+++|.++|++..+||||++|++||||++|++||+++.|.++++|..||.|||.||+.
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~ 82 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEK 82 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566888888887654 3579999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 005202 245 YNAPDTIYFRQARSIHELAKKN 266 (709)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~ 266 (709)
||+++|.+|++|..|++.|++.
T Consensus 83 yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 83 YYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999863
No 29
>smart00297 BROMO bromo domain.
Probab=99.86 E-value=1e-21 Score=176.14 Aligned_cols=102 Identities=37% Similarity=0.665 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCC
Q 005202 169 LPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248 (709)
Q Consensus 169 ~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~ 248 (709)
..+..+|..|++.+.+++.+++|..||++..+|+||++|++||||.+|++||+++.|.++++|..||.|||.||+.||++
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~ 85 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGP 85 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh
Q 005202 249 DTIYFRQARSIHELAKKNFENL 270 (709)
Q Consensus 249 dS~Vyk~A~~Le~~fek~~eeL 270 (709)
++.++.+|..|+..|++.|.++
T Consensus 86 ~s~~~~~a~~l~~~f~~~~~~~ 107 (107)
T smart00297 86 DSEVYKDAKKLEKFFEKKLREL 107 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999988763
No 30
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=6.6e-22 Score=179.61 Aligned_cols=81 Identities=31% Similarity=0.571 Sum_probs=77.7
Q ss_pred CCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHH
Q 005202 186 DTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKK 265 (709)
Q Consensus 186 ~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS~Vyk~A~~Le~~fek 265 (709)
..+++|.++|+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||+++|.+|.+|..|+.+|++
T Consensus 22 ~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f~~ 101 (103)
T cd05520 22 LLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLMQA 101 (103)
T ss_pred CccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 36679999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred H
Q 005202 266 N 266 (709)
Q Consensus 266 ~ 266 (709)
.
T Consensus 102 ~ 102 (103)
T cd05520 102 K 102 (103)
T ss_pred h
Confidence 3
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=7.3e-22 Score=179.36 Aligned_cols=93 Identities=26% Similarity=0.445 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccC
Q 005202 173 KLLLFILDRLQKK------DTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 246 (709)
Q Consensus 173 klL~~ILe~L~k~------~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN 246 (709)
+.|..|++.|.+. ..+.+|..+|+...+||||++|++||||++|++||+++.|.++++|+.||.|||.||+.||
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 82 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYN 82 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3455666665543 4677999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 005202 247 APDTIYFRQARSIHELAKK 265 (709)
Q Consensus 247 ~~dS~Vyk~A~~Le~~fek 265 (709)
+++|.||.+|..|+.+|++
T Consensus 83 ~~~s~i~~~A~~le~~~~~ 101 (103)
T cd05518 83 EEGSQVYEDANILEKVLKE 101 (103)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998875
No 32
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=2.1e-21 Score=182.64 Aligned_cols=103 Identities=30% Similarity=0.463 Sum_probs=96.8
Q ss_pred CChHHHHHHHHHHHHHH---cCCCCCCCCCCCCcC-CCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhh
Q 005202 167 TPLPDKKLLLFILDRLQ---KKDTYGVFSEPVDPE-ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNA 242 (709)
Q Consensus 167 t~~p~kklL~~ILe~L~---k~~~s~~F~ePVd~~-~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA 242 (709)
.....+..|..++.+|. .++.+++|..||+.. .+|+||++|++||||+||++||+++.|+++++|+.||+|||.||
T Consensus 21 ~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na 100 (128)
T cd05529 21 IRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNA 100 (128)
T ss_pred CCHHHHHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34456788889999999 899999999999999 99999999999999999999999999999999999999999999
Q ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHh
Q 005202 243 MQYNAPDTIYFRQARSIHELAKKNFEN 269 (709)
Q Consensus 243 ~~YN~~dS~Vyk~A~~Le~~fek~~ee 269 (709)
+.||+++|.++.+|..|+..|.+.+..
T Consensus 101 ~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 101 ETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999988754
No 33
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=6.8e-21 Score=173.11 Aligned_cols=96 Identities=24% Similarity=0.361 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHcC------CCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhc
Q 005202 171 DKKLLLFILDRLQKK------DTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (709)
Q Consensus 171 ~kklL~~ILe~L~k~------~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~ 244 (709)
.+..+..|++.|.+. ..+.+|..+|+...+||||++|++||||++|++||+++.|.++++|+.||.|||.||+.
T Consensus 2 ~~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 81 (104)
T cd05522 2 YEARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKL 81 (104)
T ss_pred HHHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 456677777777764 46679999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 005202 245 YNAPDTIYFRQARSIHELAKKN 266 (709)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~ 266 (709)
||++++.+|.+|..|+..|++.
T Consensus 82 yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 82 YNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999863
No 34
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1.4e-20 Score=171.96 Aligned_cols=96 Identities=22% Similarity=0.360 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHcCCCC------CCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhc
Q 005202 171 DKKLLLFILDRLQKKDTY------GVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (709)
Q Consensus 171 ~kklL~~ILe~L~k~~~s------~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~ 244 (709)
+.+.|..|++.|+..... .+|..+|+...+||||++|++||||++|++||++ |.++++|+.||.|||+||+.
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~ 79 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARL 79 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 356788888888876544 4999999999999999999999999999999998 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Q 005202 245 YNAPDTIYFRQARSIHELAKKNFE 268 (709)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~~e 268 (709)
||+++|.+|.+|..|++.|.+.+.
T Consensus 80 yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 80 YNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999988763
No 35
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.82 E-value=2.1e-20 Score=162.14 Aligned_cols=96 Identities=49% Similarity=0.772 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 005202 172 KKLLLFILDRLQKK--DTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (709)
Q Consensus 172 kklL~~ILe~L~k~--~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~d 249 (709)
...|..|++.|..+ +.+.+|..||++..+|+||++|++||||.+|++||+++.|.++.+|.+||.|||.||+.||+.+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45689999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 005202 250 TIYFRQARSIHELAKKNF 267 (709)
Q Consensus 250 S~Vyk~A~~Le~~fek~~ 267 (709)
+.++.+|..|+..|++.+
T Consensus 82 ~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 82 SPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999998753
No 36
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.82 E-value=2e-20 Score=161.01 Aligned_cols=84 Identities=48% Similarity=0.804 Sum_probs=80.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHH
Q 005202 175 LLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 254 (709)
Q Consensus 175 L~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS~Vyk 254 (709)
|+.||+.|++++.+.+|..||+...+|+|+++|++||||.+|++||+++.|.++++|..||++||.||+.||++++.+|.
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~ 80 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYK 80 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 005202 255 QARS 258 (709)
Q Consensus 255 ~A~~ 258 (709)
+|++
T Consensus 81 ~A~~ 84 (84)
T PF00439_consen 81 AAEK 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9974
No 37
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.80 E-value=1.8e-19 Score=165.50 Aligned_cols=99 Identities=23% Similarity=0.384 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHc-CCCCCCCCCCCCc---C--CCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccC
Q 005202 173 KLLLFILDRLQK-KDTYGVFSEPVDP---E--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 246 (709)
Q Consensus 173 klL~~ILe~L~k-~~~s~~F~ePVd~---~--~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN 246 (709)
.+|..++..++. .+.+.+|..||.. . .+|+||++|++||||+||++||+++.|++++||..||.|||+||+.||
T Consensus 3 ~~L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yN 82 (109)
T cd05492 3 CLLKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFH 82 (109)
T ss_pred hhHHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 357788888887 5667999999952 2 499999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhh
Q 005202 247 APDTIYFRQARSIHELAKKNFENLR 271 (709)
Q Consensus 247 ~~dS~Vyk~A~~Le~~fek~~eeL~ 271 (709)
+++|.+|.+|+.|.+.+...+.+|.
T Consensus 83 g~~s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 83 GADSEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999888874
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.74 E-value=8e-18 Score=154.73 Aligned_cols=100 Identities=16% Similarity=0.287 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhc
Q 005202 171 DKKLLLFILDRLQKKDT------YGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (709)
Q Consensus 171 ~kklL~~ILe~L~k~~~------s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~ 244 (709)
.++++..|+..|+.|.+ +.+|.++++ ..++||.+|++||||++|++||+++.|.++++|..||.|||.||++
T Consensus 4 vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~ 81 (110)
T cd05526 4 VQELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARR 81 (110)
T ss_pred HHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHH
Confidence 47788999999998863 459999988 4578899999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 005202 245 YNAPDTIYFRQARSIHELAKKNFENLRQ 272 (709)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~~eeL~~ 272 (709)
||.++|.||.+|..|+.+|.+.-.++..
T Consensus 82 yN~~~S~iy~dA~eLq~~f~~~rd~~~~ 109 (110)
T cd05526 82 LSRTDSEIYEDAVELQQFFIKIRDELCK 109 (110)
T ss_pred hCcccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988877654
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.68 E-value=9.5e-17 Score=174.61 Aligned_cols=90 Identities=31% Similarity=0.523 Sum_probs=85.5
Q ss_pred CCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHH
Q 005202 186 DTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKK 265 (709)
Q Consensus 186 ~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS~Vyk~A~~Le~~fek 265 (709)
....+|+.+|++..+|+||.||+.||||.+|+++|+.+.|.++++|..||.|||+||.+||++++.||.+|..|+..|..
T Consensus 164 ~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~ 243 (371)
T COG5076 164 FLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLK 243 (371)
T ss_pred ccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHHH
Confidence 36679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCC
Q 005202 266 NFENLRQDSD 275 (709)
Q Consensus 266 ~~eeL~~~~e 275 (709)
.+.++.....
T Consensus 244 ~i~~~~~~~~ 253 (371)
T COG5076 244 LIEEIPEEML 253 (371)
T ss_pred HHHhccccch
Confidence 9998877543
No 40
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.61 E-value=6e-16 Score=189.72 Aligned_cols=96 Identities=32% Similarity=0.540 Sum_probs=93.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHH
Q 005202 175 LLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFR 254 (709)
Q Consensus 175 L~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS~Vyk 254 (709)
|..||..|..|+.+|||++||++..+||||+||++||||+||+.||..+.|.+.++|..||.|||.||.+||+. +.|++
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ 1384 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGR 1384 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 005202 255 QARSIHELAKKNFENLR 271 (709)
Q Consensus 255 ~A~~Le~~fek~~eeL~ 271 (709)
+...|.++|++.|....
T Consensus 1385 ag~~l~~ff~~~~~~~~ 1401 (1404)
T KOG1245|consen 1385 AGTCLRRFFHKRWRKKF 1401 (1404)
T ss_pred hcchHHHHHHHHHHhhc
Confidence 99999999999776653
No 41
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.40 E-value=3.4e-13 Score=157.57 Aligned_cols=102 Identities=25% Similarity=0.440 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHcCC------CCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccC
Q 005202 173 KLLLFILDRLQKKD------TYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 246 (709)
Q Consensus 173 klL~~ILe~L~k~~------~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN 246 (709)
+.|..|+....++. .+..|...++.+.+||||+||++||++..|+++|.++.|.++.+...||.+||.||++||
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~ 1106 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYN 1106 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhc
Confidence 55677777776554 456999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhcCC
Q 005202 247 APDTIYFRQARSIHELAKKNFENLRQDS 274 (709)
Q Consensus 247 ~~dS~Vyk~A~~Le~~fek~~eeL~~~~ 274 (709)
+++|.||.+|..|+.+|.....++..+.
T Consensus 1107 ~egs~~y~d~~~l~~~~~~~~~~~~~~~ 1134 (1157)
T KOG0386|consen 1107 EEGSRVYEDAIVLQSVFKSARQEISKED 1134 (1157)
T ss_pred cCCceechhHHHHHHHHhhhHHHHhccc
Confidence 9999999999999999999999887643
No 42
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.37 E-value=4.7e-13 Score=154.22 Aligned_cols=102 Identities=33% Similarity=0.556 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 005202 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~d 249 (709)
.....+..||..|..|..+|+|.+||+..++||||++|++||||.||+.+|+++.|..+..|+.|+.+||.||+.||+.+
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~ 685 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSD 685 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCcc
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhh
Q 005202 250 TIYFRQARSIHELAKKNFENLR 271 (709)
Q Consensus 250 S~Vyk~A~~Le~~fek~~eeL~ 271 (709)
+.+|+.|..|...|...+....
T Consensus 686 ~~y~k~~~~le~~~~~k~~~~i 707 (720)
T KOG1472|consen 686 TQYYKCAQALEKFFLFKLNELI 707 (720)
T ss_pred chheecccchhhhhcchhhhhh
Confidence 9999999999999988877653
No 43
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.02 E-value=1.7e-10 Score=107.05 Aligned_cols=78 Identities=27% Similarity=0.328 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCc--CCCCCcccccCCCCCHHHHHHHHcCCC-------CCCHHHHHHHHHHHHHh
Q 005202 171 DKKLLLFILDRLQKKDTYGVFSEPVDP--EELPDYCEVIEHPMDFGTVRNKLANGA-------YATLEQFEKDVFLICSN 241 (709)
Q Consensus 171 ~kklL~~ILe~L~k~~~s~~F~ePVd~--~~~PDYy~IIK~PMDLsTIkkKLk~g~-------Y~Sv~eF~~DV~LIFsN 241 (709)
....|..+|..+.++..+++|.+||++ ..+||||++|++||||+||+++|.+.. |..-..+.+++..++.|
T Consensus 4 ~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (114)
T cd05494 4 ALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGR 83 (114)
T ss_pred HHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccc
Confidence 345567777777777899999999999 789999999999999999999999974 44344556667777777
Q ss_pred hhccCCC
Q 005202 242 AMQYNAP 248 (709)
Q Consensus 242 A~~YN~~ 248 (709)
|..||..
T Consensus 84 ~~~~~~~ 90 (114)
T cd05494 84 RSPSNIY 90 (114)
T ss_pred cCccccc
Confidence 7766653
No 44
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.00 E-value=7.5e-10 Score=126.53 Aligned_cols=105 Identities=24% Similarity=0.446 Sum_probs=91.9
Q ss_pred CCCCChHHHHHHHHHHHHHHcCC------CCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHH
Q 005202 164 GPSTPLPDKKLLLFILDRLQKKD------TYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFL 237 (709)
Q Consensus 164 ~p~t~~p~kklL~~ILe~L~k~~------~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~L 237 (709)
.+....+....+..||..+..+. ....|.+.++....|+||.+|..||+|..|++|++.+.|.+++.|..||+|
T Consensus 46 ~p~i~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~l 125 (629)
T KOG1827|consen 46 SPVIDPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLL 125 (629)
T ss_pred ccccChHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHH
Confidence 33345566666777777776654 345899999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHHHHHH
Q 005202 238 ICSNAMQYNAPDTIYFRQARSIHELAKKNFE 268 (709)
Q Consensus 238 IFsNA~~YN~~dS~Vyk~A~~Le~~fek~~e 268 (709)
|++||+.||..++.+|++|..|+..|.....
T Consensus 126 m~ena~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 126 MTENARLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred HHHHHHHhcCcchhhhhhhhhhhcchhhhhc
Confidence 9999999999999999999999999887554
No 45
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.86 E-value=1.9e-09 Score=129.35 Aligned_cols=94 Identities=30% Similarity=0.534 Sum_probs=84.6
Q ss_pred HHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHH
Q 005202 177 FILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQA 256 (709)
Q Consensus 177 ~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS~Vyk~A 256 (709)
.|+.+++....+++|.+||+++.+|+||.+|++||||.+|.+++..+.|.+..+|.+||++|+.||..||+.++.+..-|
T Consensus 1389 ~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~ 1468 (1563)
T KOG0008|consen 1389 NIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKA 1468 (1563)
T ss_pred hHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccHHH
Confidence 34455556678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 005202 257 RSIHELAKKNFENL 270 (709)
Q Consensus 257 ~~Le~~fek~~eeL 270 (709)
+++-+++...+.+.
T Consensus 1469 ~k~~ev~~~~~~e~ 1482 (1563)
T KOG0008|consen 1469 RKIGEVGLANLLEY 1482 (1563)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888777665543
No 46
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.85 E-value=1.8e-09 Score=100.61 Aligned_cols=42 Identities=33% Similarity=0.419 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 005202 208 EHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (709)
Q Consensus 208 K~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~d 249 (709)
-.||||+||++||.+|.|.++++|++||+|||.||+.||.++
T Consensus 62 ~y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 62 FYNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred EeccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 358999999999999999999999999999999999999864
No 47
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.60 E-value=5.5e-08 Score=117.10 Aligned_cols=98 Identities=29% Similarity=0.446 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCC
Q 005202 171 DKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 250 (709)
Q Consensus 171 ~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS 250 (709)
+.-++..|++.+.......+|..||+..+++|||.||+.||||.++++.+....|.+-++|..|+.||++|..+||++.+
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~ 1341 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLA 1341 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005202 251 IYFRQARSIHELAKKNFE 268 (709)
Q Consensus 251 ~Vyk~A~~Le~~fek~~e 268 (709)
.+...+..+...+-..|.
T Consensus 1342 ~~t~~~q~mls~~~~~~~ 1359 (1563)
T KOG0008|consen 1342 SLTRQQQSMLSLCFEKLK 1359 (1563)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999888666555443
No 48
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.40 E-value=2e-07 Score=108.55 Aligned_cols=68 Identities=34% Similarity=0.626 Sum_probs=64.5
Q ss_pred cCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCCH
Q 005202 184 KKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTI 251 (709)
Q Consensus 184 k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS~ 251 (709)
.+..+.+|.++|++...|+||.||+.||||.++.+|+..+.|.+.++|+.|+.+||.||..||.+.+.
T Consensus 300 ~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~ 367 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESH 367 (720)
T ss_pred ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccch
Confidence 47789999999999999999999999999999999999999999999999999999999999987644
No 49
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.35 E-value=6.4e-08 Score=104.83 Aligned_cols=99 Identities=30% Similarity=0.347 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 005202 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~d 249 (709)
+.....+.++.++-+++.-..|..||.....|+|.+||+.|||+.||+.|++.+.|.++.+|..|.+||+.||..||-.+
T Consensus 19 p~~~~~ehhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~ 98 (418)
T KOG1828|consen 19 PDSGDAEHHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHP 98 (418)
T ss_pred cchhhHHHHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCC
Confidence 33556778888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 005202 250 TIYFRQARSIHELAKKNFE 268 (709)
Q Consensus 250 S~Vyk~A~~Le~~fek~~e 268 (709)
+.++..|+.|..+....+.
T Consensus 99 Tv~~~aaKrL~~v~~~~~q 117 (418)
T KOG1828|consen 99 TVPIVAAKRLCPVRLGMTQ 117 (418)
T ss_pred ccccccccccchhhcchhh
Confidence 9999999999766555444
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.24 E-value=6.6e-07 Score=97.16 Aligned_cols=90 Identities=20% Similarity=0.240 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCC
Q 005202 171 DKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 250 (709)
Q Consensus 171 ~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS 250 (709)
...++-....++...+...+|..+|....+|.|..+|++|+++.|++.|..+..|.| -+|..|+.|||.||++||+++.
T Consensus 209 ~~~l~~~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk 287 (418)
T KOG1828|consen 209 GQQLQTLQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSK 287 (418)
T ss_pred cHHHHHHHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcch
Confidence 356666777888888899999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005202 251 IYFRQARSIHE 261 (709)
Q Consensus 251 ~Vyk~A~~Le~ 261 (709)
.+|..|.++..
T Consensus 288 ~yyelank~lh 298 (418)
T KOG1828|consen 288 SYYELANKQLH 298 (418)
T ss_pred HHHHHHHhhhh
Confidence 99999998876
No 51
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.20 E-value=3.7e-07 Score=106.60 Aligned_cols=96 Identities=29% Similarity=0.458 Sum_probs=88.2
Q ss_pred HHcCCCCCCCCCCCCcCC--CCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHH
Q 005202 182 LQKKDTYGVFSEPVDPEE--LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSI 259 (709)
Q Consensus 182 L~k~~~s~~F~ePVd~~~--~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS~Vyk~A~~L 259 (709)
+.++..++.|..||+... +|+||.+|++|||+.+|+++|.+..|.+..+..+||..+|.||..||.....|+.++..+
T Consensus 4 ~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~ 83 (640)
T KOG1474|consen 4 ARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSL 83 (640)
T ss_pred cccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccc
Confidence 457789999999999764 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCC
Q 005202 260 HELAKKNFENLRQDSDDN 277 (709)
Q Consensus 260 e~~fek~~eeL~~~~e~e 277 (709)
+..|.+.+..+.....+.
T Consensus 84 ~~~~~~~~~~~~~~~~d~ 101 (640)
T KOG1474|consen 84 EKLFPKKLRSMPSDEEDK 101 (640)
T ss_pred hhhcccccccccccccCC
Confidence 999998888887765544
No 52
>PF12024 DUF3512: Domain of unknown function (DUF3512); InterPro: IPR021900 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 231 to 249 amino acids in length. This domain is found associated with PF00439 from PFAM.
Probab=97.39 E-value=7.8e-05 Score=77.63 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=67.6
Q ss_pred ccccccc--CCCccc-cccccccccccccc---------ccccCCCceeccccCcceeEEeccCCchh--hHHHHHHHHH
Q 005202 375 SKGYSMK--HGKKQV-VLDENRRNTYKQFH---------QSLRESSVLTTFDADKKQLMTVGLHSEHG--YTRSLARFAA 440 (709)
Q Consensus 375 l~~l~~K--~g~k~~-~~de~rR~ty~~~~---------~~~~~~~v~~~~~~~~k~Lv~vg~~~e~~--yarSLarF~a 440 (709)
|..|..| .|-..+ +|.|+||+..++-+ ..-..+|.|+++-.|.-+||+..|+.+++ ||.||.+|++
T Consensus 88 Lg~l~gkL~~G~~tL~gfkEdrrnkvtpv~yl~YGpfsS~AP~yDStfa~lskeesdLiystYGd~t~~~~a~Si~eFv~ 167 (245)
T PF12024_consen 88 LGSLSGKLQSGTNTLQGFKEDRRNKVTPVSYLNYGPFSSFAPTYDSTFANLSKEESDLIYSTYGDETGVQYAFSIQEFVK 167 (245)
T ss_pred HHHhhccccCCcccccccchhhccceeeecccccCccccccccccccccccCcchhhHHHhhcCCccCCchhHHHHHHhh
Confidence 4444444 788888 79999999977621 23345889999999999999999999999 9999999999
Q ss_pred hhChHHHHHHHHHHhhh
Q 005202 441 NLGPVAWKIAARRIERC 457 (709)
Q Consensus 441 ~lGp~~w~ia~~ri~~~ 457 (709)
+||-++.+||-.-|...
T Consensus 168 ~~~~y~~~~vd~LLD~l 184 (245)
T PF12024_consen 168 DCGSYAYKMVDDLLDVL 184 (245)
T ss_pred cCchHHHHHHhhhhhhh
Confidence 99999999887655543
No 53
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=96.55 E-value=0.0007 Score=74.52 Aligned_cols=90 Identities=33% Similarity=0.487 Sum_probs=81.7
Q ss_pred HcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHH
Q 005202 183 QKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHEL 262 (709)
Q Consensus 183 ~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS~Vyk~A~~Le~~ 262 (709)
..+-..|+|..++.....|+|+++|..+|++++++-++..+.|....+|..|..++|+||..||+....+++.+..+...
T Consensus 276 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (371)
T COG5076 276 QAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLEDF 355 (371)
T ss_pred ccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchhhh
Confidence 44456789999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhhhc
Q 005202 263 AKKNFENLRQ 272 (709)
Q Consensus 263 fek~~eeL~~ 272 (709)
+...+...+.
T Consensus 356 ~~~~~~~~~~ 365 (371)
T COG5076 356 VIKKTRLIRE 365 (371)
T ss_pred Hhhhhhhhhc
Confidence 8877665443
No 54
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.69 E-value=0.02 Score=55.07 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 005202 210 PMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNE 278 (709)
Q Consensus 210 PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS~Vyk~A~~Le~~fek~~eeL~~~~e~eE 278 (709)
|.||.-|++||+.|.|+++.+|.+||-.|+.-++.=.+...++-+.-..+.-+|.+.|+.+..-...++
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~~~d 127 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFNSED 127 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhcccccccC
Confidence 889999999999999999999999999999988776665555555555667778888888776544433
No 55
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=87.53 E-value=0.48 Score=57.03 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=49.0
Q ss_pred cccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHH
Q 005202 203 YCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK 264 (709)
Q Consensus 203 Yy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS~Vyk~A~~Le~~fe 264 (709)
|..--.-|..|..|..+|++..|++.+.|..|+..|.+||.+|-+-+.-+-..+..|...|.
T Consensus 1046 ~~~~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~ 1107 (1113)
T KOG0644|consen 1046 VDNRFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFD 1107 (1113)
T ss_pred cCCCCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhh
Confidence 33345668999999999999999999999999999999999999877644444444444443
No 56
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=83.90 E-value=0.73 Score=57.24 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=56.8
Q ss_pred CCCCCCCCCCcCC-----CCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHH--HHHHHHHhhhccCCCC
Q 005202 187 TYGVFSEPVDPEE-----LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEK--DVFLICSNAMQYNAPD 249 (709)
Q Consensus 187 ~s~~F~ePVd~~~-----~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~--DV~LIFsNA~~YN~~d 249 (709)
....|..|++... +++|..+|+++||+...-.++..+.|.++.+|.. ++.|||.|++.||+..
T Consensus 532 ~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 532 SSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred cccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 4568888887654 4689999999999999999999999999999999 9999999999999864
No 57
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=71.12 E-value=0.89 Score=53.67 Aligned_cols=75 Identities=11% Similarity=0.059 Sum_probs=69.0
Q ss_pred CCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHH
Q 005202 188 YGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHEL 262 (709)
Q Consensus 188 s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS~Vyk~A~~Le~~ 262 (709)
.+.|.+.++.+.+|+||.+++-+|-+....+++..+.|.....|..|+.++|.|+..|+.....++.++..|.+.
T Consensus 213 Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 213 IERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred ecccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 457888889999999999999999999999999999999999999999999999999999999999888877543
No 58
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=61.22 E-value=7.3 Score=44.87 Aligned_cols=22 Identities=27% Similarity=0.166 Sum_probs=13.5
Q ss_pred cccccCCCCCHHHHHHHHcCCC
Q 005202 203 YCEVIEHPMDFGTVRNKLANGA 224 (709)
Q Consensus 203 Yy~IIK~PMDLsTIkkKLk~g~ 224 (709)
|--+=.+-|--.|+.+.|-...
T Consensus 293 YGLVGPNG~GKTTLLkHIa~Ra 314 (807)
T KOG0066|consen 293 YGLVGPNGMGKTTLLKHIAARA 314 (807)
T ss_pred ecccCCCCCchHHHHHHHHhhh
Confidence 4444455677777777776654
No 59
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=54.51 E-value=6.2 Score=48.11 Aligned_cols=73 Identities=22% Similarity=0.325 Sum_probs=58.8
Q ss_pred CCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCC--------------C----------CHHH------HHHHHHHHHHh
Q 005202 192 SEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAY--------------A----------TLEQ------FEKDVFLICSN 241 (709)
Q Consensus 192 ~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y--------------~----------Sv~e------F~~DV~LIFsN 241 (709)
.-++|...+|-|..+..-|.+|+|++..|.+..| . ++.+ ...-+.+|-.|
T Consensus 87 v~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~a 166 (1113)
T KOG0644|consen 87 VPMLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGCA 166 (1113)
T ss_pred ccCcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCcccccc
Confidence 3467888899999999999999999999998777 2 3333 66778888999
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHH
Q 005202 242 AMQYNAPDTIYFRQARSIHELAKK 265 (709)
Q Consensus 242 A~~YN~~dS~Vyk~A~~Le~~fek 265 (709)
|+.++.+++ +++-++.+.++.-.
T Consensus 167 t~~~akPgt-mvqkmk~ikrLlgH 189 (1113)
T KOG0644|consen 167 TFSIAKPGT-MVQKMKNIKRLLGH 189 (1113)
T ss_pred eeeecCcHH-HHHHHHHHHHHHhh
Confidence 999999999 77777776665443
No 60
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=41.71 E-value=12 Score=32.69 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=16.0
Q ss_pred cccccCCCCCCCCCCCCC
Q 005202 70 LRRSSRRNPNPSPEKVSE 87 (709)
Q Consensus 70 ~RrsRrRk~~~yDDedeD 87 (709)
.|+.|+||.|.|||.+.|
T Consensus 53 grG~R~RK~V~Y~D~LTE 70 (74)
T PF14619_consen 53 GRGKRERKEVSYDDGLTE 70 (74)
T ss_pred ccccccccccccCCCCCH
Confidence 789999999999988765
No 61
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=29.74 E-value=1.5e+02 Score=26.94 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHhh
Q 005202 223 GAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAKKNFENL 270 (709)
Q Consensus 223 g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS~Vyk~A~~Le~~fek~~eeL 270 (709)
..|.|..-|...+..|-.....++..+..+..+|..|++.|++.|++.
T Consensus 4 ~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 4 SSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 468888888888888877777777778999999999999999999854
No 62
>smart00412 Cu_FIST Copper-Fist. binds DNA only in present of copper or silver
Probab=26.47 E-value=28 Score=27.31 Aligned_cols=9 Identities=44% Similarity=0.874 Sum_probs=7.1
Q ss_pred hhhccCCCC
Q 005202 8 KKKKKGRPS 16 (709)
Q Consensus 8 ~~kkkgrps 16 (709)
+=||||||+
T Consensus 31 ~i~kkGRP~ 39 (39)
T smart00412 31 PVRPRGRPS 39 (39)
T ss_pred eecCCCCCC
Confidence 447899996
No 63
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=23.50 E-value=1.2e+02 Score=26.12 Aligned_cols=27 Identities=11% Similarity=0.364 Sum_probs=23.9
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 005202 214 GTVRNKLANGAYATLEQFEKDVFLICS 240 (709)
Q Consensus 214 sTIkkKLk~g~Y~Sv~eF~~DV~LIFs 240 (709)
..|+..+..|.|.|..++++|.-.++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999887765
No 64
>PF08403 AA_permease_N: Amino acid permease N-terminal; InterPro: IPR013612 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins appear to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found to the N terminus of the amino acid permease domain (IPR004841 from INTERPRO) in metazoan Na-K-Cl cotransporters.
Probab=23.45 E-value=45 Score=29.53 Aligned_cols=15 Identities=47% Similarity=0.694 Sum_probs=12.5
Q ss_pred hhccCCCChHHHHHH
Q 005202 9 KKKKGRPSLLDLQKR 23 (709)
Q Consensus 9 ~kkkgrps~~dl~~r 23 (709)
+-|+-||||.||.+-
T Consensus 35 ~~k~~RPSL~~Lh~~ 49 (74)
T PF08403_consen 35 GQKKSRPSLDELHSQ 49 (74)
T ss_pred CcccCCCCHHHHHHH
Confidence 557899999999764
Done!