Query 005202
Match_columns 709
No_of_seqs 394 out of 1337
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 18:29:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9e_A Peregrin; four-helix bu 99.9 5.1E-26 1.7E-30 210.1 13.2 107 167-273 4-110 (121)
2 4alg_A Bromodomain-containing 99.9 4.8E-26 1.6E-30 218.5 13.0 110 167-276 29-140 (154)
3 3g0l_A Hwalp4, bromodomain adj 99.9 9.3E-26 3.2E-30 206.5 13.6 104 170-273 13-116 (117)
4 3d7c_A General control of amin 99.9 5.8E-26 2E-30 206.6 11.7 105 168-272 5-109 (112)
5 2dat_A Possible global transcr 99.9 8.7E-26 3E-30 208.8 12.7 108 165-272 8-121 (123)
6 2oss_A HUNK1 protein, bromodom 99.9 2.1E-25 7.1E-30 207.6 14.5 107 167-273 18-126 (127)
7 1e6i_A Transcriptional activat 99.9 1.5E-25 5E-30 206.9 11.9 103 170-272 13-115 (121)
8 2i7k_A Bromodomain-containing 99.9 1.8E-25 6.2E-30 205.5 12.3 106 168-273 6-111 (117)
9 2grc_A Probable global transcr 99.9 1.4E-25 4.9E-30 209.1 11.3 112 167-278 8-126 (129)
10 3hme_A Bromodomain-containing 99.9 3.2E-25 1.1E-29 205.2 12.2 104 168-271 11-114 (123)
11 3nxb_A CAT eye syndrome critic 99.9 2.7E-25 9.3E-30 203.2 11.3 100 170-269 16-115 (116)
12 3rcw_A Bromodomain-containing 99.9 5.6E-25 1.9E-29 206.2 13.1 107 168-274 11-117 (135)
13 3q2e_A Bromodomain and WD repe 99.9 4.2E-25 1.4E-29 204.2 11.8 108 167-274 7-115 (123)
14 3mb4_A Protein polybromo-1; PB 99.9 3.9E-25 1.3E-29 204.6 11.6 106 167-272 12-123 (124)
15 2yyn_A Transcription intermedi 99.9 7.4E-25 2.5E-29 205.9 13.1 106 170-276 20-127 (135)
16 3jvl_A Bromodomain-containing 99.9 1.9E-25 6.5E-30 205.3 8.8 106 169-274 8-118 (120)
17 3mb3_A PH-interacting protein; 99.9 4.8E-25 1.6E-29 206.6 11.6 106 168-273 19-125 (135)
18 2ouo_A HUNK1 protein, bromodom 99.9 6E-25 2E-29 205.3 10.8 103 170-272 22-129 (130)
19 3ljw_A Protein polybromo-1; al 99.9 7.2E-25 2.5E-29 201.8 10.3 105 168-272 6-116 (120)
20 3iu5_A Protein polybromo-1; PB 99.9 8.9E-25 3E-29 199.9 10.6 104 170-273 5-114 (116)
21 3p1f_A CREB-binding protein; s 99.9 1.3E-24 4.5E-29 199.5 11.7 106 167-272 8-116 (119)
22 3fkm_X Signaling protein; brom 99.9 2.5E-24 8.6E-29 208.9 12.7 105 167-271 18-124 (166)
23 3k2j_A Protein polybromo-1; PB 99.9 1.7E-24 5.7E-29 202.5 11.0 106 170-275 17-128 (130)
24 3mqm_A Probable histone-lysine 99.9 2.6E-24 8.9E-29 199.5 10.5 104 169-272 8-117 (126)
25 3uv4_A Second bromodomain of h 99.9 8E-24 2.7E-28 204.0 11.0 105 170-274 29-134 (158)
26 2ri7_A Nucleosome-remodeling f 99.9 9E-24 3.1E-28 204.8 10.6 103 169-271 71-173 (174)
27 3tlp_A Protein polybromo-1; PB 99.9 1.1E-23 3.9E-28 200.6 11.0 106 172-277 26-138 (150)
28 3dai_A ATPase family AAA domai 99.9 6.5E-23 2.2E-27 191.3 11.8 99 170-268 10-112 (130)
29 3o36_A Transcription intermedi 99.9 1.3E-22 4.4E-27 198.8 12.9 104 167-271 78-183 (184)
30 3uv5_A Transcription initiatio 99.9 6.8E-22 2.3E-26 204.3 12.1 104 169-272 13-116 (265)
31 2dkw_A Hypothetical protein KI 99.9 1.3E-21 4.6E-26 183.2 11.9 98 168-270 10-111 (131)
32 3u5n_A E3 ubiquitin-protein li 99.9 1.4E-21 4.9E-26 195.0 12.6 107 167-274 78-204 (207)
33 3aad_A Transcription initiatio 99.8 7.7E-22 2.6E-26 206.7 8.9 103 169-271 46-148 (292)
34 2ro1_A Transcription intermedi 99.8 7.8E-22 2.7E-26 195.0 8.2 101 169-274 75-180 (189)
35 3uv5_A Transcription initiatio 99.8 2.5E-21 8.5E-26 200.0 11.5 105 170-274 136-241 (265)
36 3aad_A Transcription initiatio 99.8 1.2E-20 4.1E-25 197.7 11.3 102 172-273 171-273 (292)
37 2r0y_A Chromatin structure-rem 99.8 3.7E-20 1.3E-24 195.7 8.6 87 184-270 177-263 (311)
38 2r10_A Chromatin structure-rem 99.8 5.2E-20 1.8E-24 198.1 9.2 86 185-270 228-313 (361)
39 2r10_A Chromatin structure-rem 99.8 4.4E-19 1.5E-23 190.9 8.0 101 169-271 77-180 (361)
40 2r0y_A Chromatin structure-rem 99.7 8.2E-19 2.8E-23 185.5 7.7 100 170-271 28-130 (311)
41 3iu6_A Protein polybromo-1; PB 99.7 1.6E-17 5.4E-22 158.3 12.8 103 169-275 6-114 (147)
42 3lqh_A Histone-lysine N-methyl 99.4 1.7E-13 5.8E-18 135.1 7.6 98 170-278 75-172 (183)
43 1dum_A Magainin 2; antibiotic, 53.7 0.41 1.4E-05 32.1 -3.9 17 456-472 4-20 (26)
No 1
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.93 E-value=5.1e-26 Score=210.11 Aligned_cols=107 Identities=39% Similarity=0.586 Sum_probs=102.5
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccC
Q 005202 167 TPLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 246 (709)
Q Consensus 167 t~~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN 246 (709)
...+++..|..||+.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||
T Consensus 4 ~~~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 83 (121)
T 2d9e_A 4 GSSGFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYN 83 (121)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhcC
Q 005202 247 APDTIYFRQARSIHELAKKNFENLRQD 273 (709)
Q Consensus 247 ~~dS~Vyk~A~~Le~~fek~~eeL~~~ 273 (709)
+++|.+|++|..|++.|++.|++++..
T Consensus 84 ~~~s~~~~~A~~L~~~~~~~l~~~~~~ 110 (121)
T 2d9e_A 84 AKDTIFYRAAVRLREQGGAVLRQARRQ 110 (121)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988763
No 2
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.93 E-value=4.8e-26 Score=218.52 Aligned_cols=110 Identities=25% Similarity=0.411 Sum_probs=104.1
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCCCCCCcC--CCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhc
Q 005202 167 TPLPDKKLLLFILDRLQKKDTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (709)
Q Consensus 167 t~~p~kklL~~ILe~L~k~~~s~~F~ePVd~~--~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~ 244 (709)
....++.+|..||+.|++++.+++|.+||++. .+||||++|++||||+||++||+++.|.++++|++||+|||.||++
T Consensus 29 ~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~ 108 (154)
T 4alg_A 29 VTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYI 108 (154)
T ss_dssp CBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999988 6999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 005202 245 YNAPDTIYFRQARSIHELAKKNFENLRQDSDD 276 (709)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~~eeL~~~~e~ 276 (709)
||++++.||.+|..|++.|++.|++++....+
T Consensus 109 YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~e 140 (154)
T 4alg_A 109 YNKPTDDIVLMAQTLEKIFLQKVASMPQEEQE 140 (154)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHTTSCSSCCB
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCCchhcc
Confidence 99999999999999999999999999876543
No 3
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.93 E-value=9.3e-26 Score=206.53 Aligned_cols=104 Identities=31% Similarity=0.489 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 005202 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~d 249 (709)
...+.|..||+.|.+++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|++||+|||.||+.||+++
T Consensus 13 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 92 (117)
T 3g0l_A 13 KDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDD 92 (117)
T ss_dssp THHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhcC
Q 005202 250 TIYFRQARSIHELAKKNFENLRQD 273 (709)
Q Consensus 250 S~Vyk~A~~Le~~fek~~eeL~~~ 273 (709)
|.||.+|..|++.|++.|+++...
T Consensus 93 s~~~~~A~~L~~~f~~~~~~~~~~ 116 (117)
T 3g0l_A 93 SDIGRAGHNMRKYFEKKWTDTFKV 116 (117)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999998753
No 4
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.93 E-value=5.8e-26 Score=206.59 Aligned_cols=105 Identities=29% Similarity=0.421 Sum_probs=101.3
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCC
Q 005202 168 PLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 247 (709)
Q Consensus 168 ~~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~ 247 (709)
+..+++.|..||+.|.+++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||+
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~ 84 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNP 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhc
Q 005202 248 PDTIYFRQARSIHELAKKNFENLRQ 272 (709)
Q Consensus 248 ~dS~Vyk~A~~Le~~fek~~eeL~~ 272 (709)
++|.+|.+|..|++.|++.|+++..
T Consensus 85 ~~s~~~~~A~~L~~~f~~~~~~~~~ 109 (112)
T 3d7c_A 85 PDSEYCRCASALEKFFYFKLKEGGL 109 (112)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999998754
No 5
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=8.7e-26 Score=208.84 Aligned_cols=108 Identities=26% Similarity=0.463 Sum_probs=102.2
Q ss_pred CCCChHHHHHHHHHHHHHHcCC------CCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 005202 165 PSTPLPDKKLLLFILDRLQKKD------TYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLI 238 (709)
Q Consensus 165 p~t~~p~kklL~~ILe~L~k~~------~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LI 238 (709)
...+..+.+.|..||+.|+++. .+++|.+||+...+||||++|++||||+||++||+++.|.++++|++||+||
T Consensus 8 ~~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li 87 (123)
T 2dat_A 8 SPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLL 87 (123)
T ss_dssp SCCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 3466788999999999999886 5789999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 005202 239 CSNAMQYNAPDTIYFRQARSIHELAKKNFENLRQ 272 (709)
Q Consensus 239 FsNA~~YN~~dS~Vyk~A~~Le~~fek~~eeL~~ 272 (709)
|.||++||++++.||++|..|++.|++.+++++.
T Consensus 88 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 88 CHNAQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999998875
No 6
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.93 E-value=2.1e-25 Score=207.62 Aligned_cols=107 Identities=28% Similarity=0.442 Sum_probs=101.8
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCCCCCCcC--CCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhc
Q 005202 167 TPLPDKKLLLFILDRLQKKDTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (709)
Q Consensus 167 t~~p~kklL~~ILe~L~k~~~s~~F~ePVd~~--~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~ 244 (709)
....++.+|..||+.|++++.+++|.+|||.. .+||||++|++||||+||++||+++.|.++++|++||+|||.||++
T Consensus 18 ~~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 97 (127)
T 2oss_A 18 QTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYI 97 (127)
T ss_dssp CCHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999975 7999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q 005202 245 YNAPDTIYFRQARSIHELAKKNFENLRQD 273 (709)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~~eeL~~~ 273 (709)
||+++|.||.+|..|++.|++.|++++.+
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~~~~lp~~ 126 (127)
T 2oss_A 98 YNKPGDDIVLMAEALEKLFLQKINELPTE 126 (127)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999988753
No 7
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.92 E-value=1.5e-25 Score=206.94 Aligned_cols=103 Identities=30% Similarity=0.549 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 005202 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~d 249 (709)
+..+.|..||+.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||+++
T Consensus 13 ~~~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 92 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 92 (121)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhc
Q 005202 250 TIYFRQARSIHELAKKNFENLRQ 272 (709)
Q Consensus 250 S~Vyk~A~~Le~~fek~~eeL~~ 272 (709)
|.||++|..|++.|++.+++++.
T Consensus 93 s~i~~~A~~L~~~f~~~~~~~p~ 115 (121)
T 1e6i_A 93 TSYYKYANRLEKFFNNKVKEIPE 115 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSGG
T ss_pred CHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999998864
No 8
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.92 E-value=1.8e-25 Score=205.53 Aligned_cols=106 Identities=35% Similarity=0.639 Sum_probs=101.5
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCC
Q 005202 168 PLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 247 (709)
Q Consensus 168 ~~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~ 247 (709)
..++++.|..||+.|++++.+++|..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||+
T Consensus 6 ~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~ 85 (117)
T 2i7k_A 6 QTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNK 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcC
Q 005202 248 PDTIYFRQARSIHELAKKNFENLRQD 273 (709)
Q Consensus 248 ~dS~Vyk~A~~Le~~fek~~eeL~~~ 273 (709)
++|.||++|..|++.|++.+..+.-+
T Consensus 86 ~~s~i~~~A~~L~~~f~~~~~~~~~~ 111 (117)
T 2i7k_A 86 PETIYYKAAKKLLHSGMKILSQERLE 111 (117)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987653
No 9
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.92 E-value=1.4e-25 Score=209.11 Aligned_cols=112 Identities=26% Similarity=0.503 Sum_probs=103.3
Q ss_pred CChHHHHHHHHHHHHHHcCC-------CCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 005202 167 TPLPDKKLLLFILDRLQKKD-------TYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLIC 239 (709)
Q Consensus 167 t~~p~kklL~~ILe~L~k~~-------~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIF 239 (709)
.+..+.+.|..||+.|+++. .+++|.+||+...+||||++|++||||+||++||+++.|.++++|.+||+|||
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLC 87 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 55678999999999999875 47899999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 005202 240 SNAMQYNAPDTIYFRQARSIHELAKKNFENLRQDSDDNE 278 (709)
Q Consensus 240 sNA~~YN~~dS~Vyk~A~~Le~~fek~~eeL~~~~e~eE 278 (709)
.||++||+++|.||.+|..|+..|++.|+++....+.++
T Consensus 88 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~~~~ 126 (129)
T 2grc_A 88 QNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEG 126 (129)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCcccc
Confidence 999999999999999999999999999999988665543
No 10
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.92 E-value=3.2e-25 Score=205.17 Aligned_cols=104 Identities=39% Similarity=0.723 Sum_probs=99.7
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCC
Q 005202 168 PLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 247 (709)
Q Consensus 168 ~~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~ 247 (709)
..++++.|+.||+.|.+++.+++|..||++..+||||++|++||||+||++||+++.|.++++|+.||+|||.||++||+
T Consensus 11 ~~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (123)
T 3hme_A 11 STPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNR 90 (123)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhh
Q 005202 248 PDTIYFRQARSIHELAKKNFENLR 271 (709)
Q Consensus 248 ~dS~Vyk~A~~Le~~fek~~eeL~ 271 (709)
++|.||++|..|++.|++.|.+..
T Consensus 91 ~~s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 91 PDTVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp TTSHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887643
No 11
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.92 E-value=2.7e-25 Score=203.16 Aligned_cols=100 Identities=26% Similarity=0.457 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 005202 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~d 249 (709)
++.+.|..||+.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|+.||+|||.||++||+++
T Consensus 16 ~~~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 95 (116)
T 3nxb_A 16 DDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGES 95 (116)
T ss_dssp CHHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHh
Q 005202 250 TIYFRQARSIHELAKKNFEN 269 (709)
Q Consensus 250 S~Vyk~A~~Le~~fek~~ee 269 (709)
|.||.+|..|+..|++.|.+
T Consensus 96 s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 96 SEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999875
No 12
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.92 E-value=5.6e-25 Score=206.16 Aligned_cols=107 Identities=39% Similarity=0.677 Sum_probs=102.3
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCC
Q 005202 168 PLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 247 (709)
Q Consensus 168 ~~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~ 247 (709)
..+++..|+.||+.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|+.||+|||.||++||+
T Consensus 11 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (135)
T 3rcw_A 11 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNA 90 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCC
Q 005202 248 PDTIYFRQARSIHELAKKNFENLRQDS 274 (709)
Q Consensus 248 ~dS~Vyk~A~~Le~~fek~~eeL~~~~ 274 (709)
++|.||++|..|++.|++.|+++....
T Consensus 91 ~~s~~~~~A~~L~~~~~~~~~~~~~~~ 117 (135)
T 3rcw_A 91 RDTVFYRAAVRLRDQGGVVLRQARREV 117 (135)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886643
No 13
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.92 E-value=4.2e-25 Score=204.15 Aligned_cols=108 Identities=31% Similarity=0.467 Sum_probs=101.5
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccC
Q 005202 167 TPLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYN 246 (709)
Q Consensus 167 t~~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN 246 (709)
....|++.|..||+.|.+++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|+.||+|||.||+.||
T Consensus 7 ~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 7 VESNWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp ---CHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHhhhcCC
Q 005202 247 AP-DTIYFRQARSIHELAKKNFENLRQDS 274 (709)
Q Consensus 247 ~~-dS~Vyk~A~~Le~~fek~~eeL~~~~ 274 (709)
++ +|.||++|..|++.|++.|+++....
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 115 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKISSDF 115 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 99999999999999999999987654
No 14
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.92 E-value=3.9e-25 Score=204.65 Aligned_cols=106 Identities=22% Similarity=0.442 Sum_probs=99.9
Q ss_pred CChHHHHHHHHHHHHHHcC------CCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 005202 167 TPLPDKKLLLFILDRLQKK------DTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICS 240 (709)
Q Consensus 167 t~~p~kklL~~ILe~L~k~------~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFs 240 (709)
...++++.|..||+.|.++ ..+++|.+||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.
T Consensus 12 ~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 91 (124)
T 3mb4_A 12 YMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFN 91 (124)
T ss_dssp CCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999984 4569999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 005202 241 NAMQYNAPDTIYFRQARSIHELAKKNFENLRQ 272 (709)
Q Consensus 241 NA~~YN~~dS~Vyk~A~~Le~~fek~~eeL~~ 272 (709)
||++||+++|.||++|..|++.|++.|+++..
T Consensus 92 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 92 NACTYNEPESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999865
No 15
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.92 E-value=7.4e-25 Score=205.87 Aligned_cols=106 Identities=26% Similarity=0.417 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcC--CCCCCHHHHHHHHHHHHHhhhccCC
Q 005202 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLAN--GAYATLEQFEKDVFLICSNAMQYNA 247 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~--g~Y~Sv~eF~~DV~LIFsNA~~YN~ 247 (709)
..++.|..||..|++++.+++|.+||+. .+||||++|++||||+||++||++ +.|.++++|++||+|||.||++||+
T Consensus 20 ~~~~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~ 98 (135)
T 2yyn_A 20 IDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNE 98 (135)
T ss_dssp HHHHHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 3578899999999999999999999998 799999999999999999999998 5899999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 005202 248 PDTIYFRQARSIHELAKKNFENLRQDSDD 276 (709)
Q Consensus 248 ~dS~Vyk~A~~Le~~fek~~eeL~~~~e~ 276 (709)
++|.||++|..|+..|++.|+++..+...
T Consensus 99 ~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 127 (135)
T 2yyn_A 99 PDSEVANAGIKLENYFEELLKNLYPEKRF 127 (135)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 99999999999999999999999876543
No 16
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.92 E-value=1.9e-25 Score=205.31 Aligned_cols=106 Identities=33% Similarity=0.552 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHHcCCC---CCCCCCCCCcCC--CCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhh
Q 005202 169 LPDKKLLLFILDRLQKKDT---YGVFSEPVDPEE--LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAM 243 (709)
Q Consensus 169 ~p~kklL~~ILe~L~k~~~---s~~F~ePVd~~~--~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~ 243 (709)
....+.|..||..|.+++. +++|.+||++.. +||||++|++||||+||++||+++.|.++++|..||+|||.||+
T Consensus 8 ~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 87 (120)
T 3jvl_A 8 SEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCY 87 (120)
T ss_dssp CHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 3568889999999999887 899999999998 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhhcCC
Q 005202 244 QYNAPDTIYFRQARSIHELAKKNFENLRQDS 274 (709)
Q Consensus 244 ~YN~~dS~Vyk~A~~Le~~fek~~eeL~~~~ 274 (709)
+||+++|.||.+|..|++.|++.|++++...
T Consensus 88 ~yN~~~s~~~~~A~~L~~~f~~~~~~~p~~~ 118 (120)
T 3jvl_A 88 KYNPPDHEVVAMARKLQDVFEMRFAKMPDEP 118 (120)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHTTCCC--
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 9999999999999999999999999998653
No 17
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.92 E-value=4.8e-25 Score=206.62 Aligned_cols=106 Identities=29% Similarity=0.437 Sum_probs=101.5
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCC
Q 005202 168 PLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 247 (709)
Q Consensus 168 ~~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~ 247 (709)
...+++.|..||+.|.+++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|+.||+|||.||++||+
T Consensus 19 ~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 98 (135)
T 3mb3_A 19 IQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTP 98 (135)
T ss_dssp SSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHhhhcC
Q 005202 248 P-DTIYFRQARSIHELAKKNFENLRQD 273 (709)
Q Consensus 248 ~-dS~Vyk~A~~Le~~fek~~eeL~~~ 273 (709)
+ +|.||.+|..|++.|++.|.++..+
T Consensus 99 ~~~s~i~~~A~~L~~~f~~~~~~~~~~ 125 (135)
T 3mb3_A 99 SKRSRIYSMSLRLSAFFEEHISSVLSD 125 (135)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 8999999999999999999988654
No 18
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.91 E-value=6e-25 Score=205.29 Aligned_cols=103 Identities=34% Similarity=0.560 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHcCCC---CCCCCCCCCcCC--CCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhc
Q 005202 170 PDKKLLLFILDRLQKKDT---YGVFSEPVDPEE--LPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~---s~~F~ePVd~~~--~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~ 244 (709)
...+.|..||+.|..++. +++|.+|||+.. +||||++|++||||+||++||+++.|.++++|.+||+|||.||++
T Consensus 22 ~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~ 101 (130)
T 2ouo_A 22 EQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYK 101 (130)
T ss_dssp HHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 456889999999998874 789999999874 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 005202 245 YNAPDTIYFRQARSIHELAKKNFENLRQ 272 (709)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~~eeL~~ 272 (709)
||+++|.||.+|..|+..|++.|.+|+.
T Consensus 102 yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 102 YNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999875
No 19
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.91 E-value=7.2e-25 Score=201.76 Aligned_cols=105 Identities=26% Similarity=0.491 Sum_probs=100.4
Q ss_pred ChHHHHHHHHHHHHHHcCCC------CCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Q 005202 168 PLPDKKLLLFILDRLQKKDT------YGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSN 241 (709)
Q Consensus 168 ~~p~kklL~~ILe~L~k~~~------s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsN 241 (709)
+..+++.|..|++.|.++.. +++|.+||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.|
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 85 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKN 85 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999998876 889999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 005202 242 AMQYNAPDTIYFRQARSIHELAKKNFENLRQ 272 (709)
Q Consensus 242 A~~YN~~dS~Vyk~A~~Le~~fek~~eeL~~ 272 (709)
|++||+++|.||++|..|++.|++.|+++..
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~ 116 (120)
T 3ljw_A 86 AKTYNEPGSQVFKDANSIKKIFYMKKAEIEH 116 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999865
No 20
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.91 E-value=8.9e-25 Score=199.91 Aligned_cols=104 Identities=20% Similarity=0.356 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHcCC------CCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhh
Q 005202 170 PDKKLLLFILDRLQKKD------TYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAM 243 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~------~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~ 243 (709)
...+.|..|++.|.++. .+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 84 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAK 84 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 45788999999999885 488999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q 005202 244 QYNAPDTIYFRQARSIHELAKKNFENLRQD 273 (709)
Q Consensus 244 ~YN~~dS~Vyk~A~~Le~~fek~~eeL~~~ 273 (709)
+||+++|.||++|..|++.|++.++++.+.
T Consensus 85 ~yN~~~s~~~~~A~~L~~~f~~~~~~l~~~ 114 (116)
T 3iu5_A 85 SYYKPDSPEYKAACKLWDLYLRTRNEFVQK 114 (116)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998764
No 21
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.91 E-value=1.3e-24 Score=199.46 Aligned_cols=106 Identities=28% Similarity=0.546 Sum_probs=99.8
Q ss_pred CChHHHHHHHHHHHHHHc-CCCCCCCCCCCCcC--CCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhh
Q 005202 167 TPLPDKKLLLFILDRLQK-KDTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAM 243 (709)
Q Consensus 167 t~~p~kklL~~ILe~L~k-~~~s~~F~ePVd~~--~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~ 243 (709)
.+..+.+.|..+|+.|.+ ++.+++|.+||++. .+||||++|++||||+||++||+++.|.++++|.+||+|||.||+
T Consensus 8 ~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 87 (119)
T 3p1f_A 8 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAW 87 (119)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 445678999999999988 56999999999998 799999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 005202 244 QYNAPDTIYFRQARSIHELAKKNFENLRQ 272 (709)
Q Consensus 244 ~YN~~dS~Vyk~A~~Le~~fek~~eeL~~ 272 (709)
+||+++|.||.+|..|++.|++.|+++.+
T Consensus 88 ~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 116 (119)
T 3p1f_A 88 LYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 116 (119)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998764
No 22
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.91 E-value=2.5e-24 Score=208.92 Aligned_cols=105 Identities=28% Similarity=0.407 Sum_probs=98.6
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCCCCCCcC--CCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhc
Q 005202 167 TPLPDKKLLLFILDRLQKKDTYGVFSEPVDPE--ELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (709)
Q Consensus 167 t~~p~kklL~~ILe~L~k~~~s~~F~ePVd~~--~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~ 244 (709)
....|++.|..||..|++++.+++|..||++. .+||||++|++||||+||++||+++.|.++++|+.||+|||.||++
T Consensus 18 ~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~ 97 (166)
T 3fkm_X 18 GNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSL 97 (166)
T ss_dssp TTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999976 5999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhh
Q 005202 245 YNAPDTIYFRQARSIHELAKKNFENLR 271 (709)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~~eeL~ 271 (709)
||+++|.||.+|..|++.|++.|.++.
T Consensus 98 yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 98 YNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp SSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999998875
No 23
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.7e-24 Score=202.47 Aligned_cols=106 Identities=23% Similarity=0.407 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHcCCC------CCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhh
Q 005202 170 PDKKLLLFILDRLQKKDT------YGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAM 243 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~------s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~ 243 (709)
.+...|+.|++.|.++.. +++|.+||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||+
T Consensus 17 kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 96 (130)
T 3k2j_A 17 NLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAK 96 (130)
T ss_dssp HHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 457888999999987754 88999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhhcCCC
Q 005202 244 QYNAPDTIYFRQARSIHELAKKNFENLRQDSD 275 (709)
Q Consensus 244 ~YN~~dS~Vyk~A~~Le~~fek~~eeL~~~~e 275 (709)
+||+++|.||++|..|++.|++.|+++....+
T Consensus 97 ~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~e 128 (130)
T 3k2j_A 97 RYNVPNSAIYKRVLKLQQVMQAKKKELARRDD 128 (130)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999977543
No 24
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.90 E-value=2.6e-24 Score=199.47 Aligned_cols=104 Identities=18% Similarity=0.238 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHHHcCCC------CCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhh
Q 005202 169 LPDKKLLLFILDRLQKKDT------YGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNA 242 (709)
Q Consensus 169 ~p~kklL~~ILe~L~k~~~------s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA 242 (709)
..+++.|..|++.|.++.+ +++|.+||+...+||||++|++||||+||++||+++.|.++++|.+||+|||.||
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 87 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNA 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3568889999999998754 8899999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q 005202 243 MQYNAPDTIYFRQARSIHELAKKNFENLRQ 272 (709)
Q Consensus 243 ~~YN~~dS~Vyk~A~~Le~~fek~~eeL~~ 272 (709)
+.||+++|.||++|..|++.|++.+.++..
T Consensus 88 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 117 (126)
T 3mqm_A 88 EKYYGRKSPVGRDVCRLRKAYYNARHEASA 117 (126)
T ss_dssp HHHHCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988764
No 25
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.90 E-value=8e-24 Score=204.03 Aligned_cols=105 Identities=28% Similarity=0.470 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHH-HHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCC
Q 005202 170 PDKKLLLFILDR-LQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248 (709)
Q Consensus 170 p~kklL~~ILe~-L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~ 248 (709)
.+..+|..|+.. |++++.+++|..||++..+||||++|++||||+||++||+++.|.++++|+.||+|||.||++||++
T Consensus 29 ~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~ 108 (158)
T 3uv4_A 29 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGP 108 (158)
T ss_dssp HHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 455666666654 6678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhcCC
Q 005202 249 DTIYFRQARSIHELAKKNFENLRQDS 274 (709)
Q Consensus 249 dS~Vyk~A~~Le~~fek~~eeL~~~~ 274 (709)
+|.||++|..|+..|++.|.++....
T Consensus 109 ~s~i~~~A~~L~~~~~~~l~e~~~~l 134 (158)
T 3uv4_A 109 ESQYTKTAQEIVNVCYQTLTEYDEHL 134 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887644
No 26
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.89 E-value=9e-24 Score=204.79 Aligned_cols=103 Identities=29% Similarity=0.492 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCC
Q 005202 169 LPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248 (709)
Q Consensus 169 ~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~ 248 (709)
....+.|..||+.|.+++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|++||+|||.||++||++
T Consensus 71 ~~~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 150 (174)
T 2ri7_A 71 EKDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPS 150 (174)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhh
Q 005202 249 DTIYFRQARSIHELAKKNFENLR 271 (709)
Q Consensus 249 dS~Vyk~A~~Le~~fek~~eeL~ 271 (709)
+|.||++|..|++.|++.|++++
T Consensus 151 ~s~~~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 151 DSPFYQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp TSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998875
No 27
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.89 E-value=1.1e-23 Score=200.59 Aligned_cols=106 Identities=24% Similarity=0.417 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHcCCC-------CCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhc
Q 005202 172 KKLLLFILDRLQKKDT-------YGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQ 244 (709)
Q Consensus 172 kklL~~ILe~L~k~~~-------s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~ 244 (709)
+..|..|++.|.++.. +++|..||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||++
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 105 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARH 105 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 6678888888877654 789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 005202 245 YNAPDTIYFRQARSIHELAKKNFENLRQDSDDN 277 (709)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~~eeL~~~~e~e 277 (709)
||+++|.||++|..|++.|++.|+++....+.+
T Consensus 106 yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~d 138 (150)
T 3tlp_A 106 YNEEGSQVYNDAHILEKLLKEKRKELGPLPDDD 138 (150)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHCCC----
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHccCCCChh
Confidence 999999999999999999999999998766544
No 28
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.88 E-value=6.5e-23 Score=191.29 Aligned_cols=99 Identities=33% Similarity=0.574 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 005202 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~d 249 (709)
.++.+|+.|++.|.+++.+++|..||++..+||||++|++||||+||++||+++.|.++++|+.||+|||.||++||+++
T Consensus 10 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 89 (130)
T 3dai_A 10 ELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDR 89 (130)
T ss_dssp HHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CHH----HHHHHHHHHHHHHHHH
Q 005202 250 TIY----FRQARSIHELAKKNFE 268 (709)
Q Consensus 250 S~V----yk~A~~Le~~fek~~e 268 (709)
|.+ +.+|..|++.+...+.
T Consensus 90 s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 90 DPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Confidence 866 7888888888888885
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.88 E-value=1.3e-22 Score=198.82 Aligned_cols=104 Identities=27% Similarity=0.421 Sum_probs=98.3
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcC--CCCCCHHHHHHHHHHHHHhhhc
Q 005202 167 TPLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLAN--GAYATLEQFEKDVFLICSNAMQ 244 (709)
Q Consensus 167 t~~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~--g~Y~Sv~eF~~DV~LIFsNA~~ 244 (709)
....+++.|+.||..|++++.+++|.+||+.. +||||+||++||||+||++||++ +.|.++++|++||+|||.||++
T Consensus 78 l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~~-~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~ 156 (184)
T 3o36_A 78 LTPIDKRKCERLLLFLYCHEMSLAFQDPVPLT-VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAE 156 (184)
T ss_dssp CCHHHHHHHHHHHHHHHHSTTCHHHHSCCCTT-STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhchhhhhhccccccC-CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44567889999999999999999999999964 89999999999999999999998 7899999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhh
Q 005202 245 YNAPDTIYFRQARSIHELAKKNFENLR 271 (709)
Q Consensus 245 YN~~dS~Vyk~A~~Le~~fek~~eeL~ 271 (709)
||++++.||++|..|++.|++.|+++.
T Consensus 157 yN~~~s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 157 FNEPDSEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999874
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.86 E-value=6.8e-22 Score=204.26 Aligned_cols=104 Identities=23% Similarity=0.444 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCC
Q 005202 169 LPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248 (709)
Q Consensus 169 ~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~ 248 (709)
..+...|+.||+.|++++.+++|..||++..+||||++|++||||+||++||+++.|.++++|+.||+|||.||++||++
T Consensus 13 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 92 (265)
T 3uv5_A 13 VTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGP 92 (265)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhc
Q 005202 249 DTIYFRQARSIHELAKKNFENLRQ 272 (709)
Q Consensus 249 dS~Vyk~A~~Le~~fek~~eeL~~ 272 (709)
+|.||.+|..|+..|++.|+++..
T Consensus 93 ~s~i~~~A~~l~~~~~~~~~~~~~ 116 (265)
T 3uv5_A 93 KHSLTQISQSMLDLCDEKLKEKED 116 (265)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999988654
No 31
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=183.20 Aligned_cols=98 Identities=33% Similarity=0.502 Sum_probs=91.3
Q ss_pred ChHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCC
Q 005202 168 PLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNA 247 (709)
Q Consensus 168 ~~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~ 247 (709)
...++.+|..||+.|.+++.+++|.+| +||||++|++||||+||++||+++.|.++++|..||+|||.||++||+
T Consensus 10 ~~~L~~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~ 84 (131)
T 2dkw_A 10 LRELRLFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNP 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 456789999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred CCCH----HHHHHHHHHHHHHHHHHhh
Q 005202 248 PDTI----YFRQARSIHELAKKNFENL 270 (709)
Q Consensus 248 ~dS~----Vyk~A~~Le~~fek~~eeL 270 (709)
++|+ |+.+|..|++.|...+++-
T Consensus 85 ~~s~~~~~i~~~A~~L~~~~~~~l~~~ 111 (131)
T 2dkw_A 85 DKDPGDKIIRHRACTLKDTAHAIIAAE 111 (131)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9984 6799999999999888543
No 32
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.86 E-value=1.4e-21 Score=195.00 Aligned_cols=107 Identities=25% Similarity=0.396 Sum_probs=100.7
Q ss_pred CChHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhh
Q 005202 167 TPLPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLAN---GAYATLEQFEKDVFLICSNAM 243 (709)
Q Consensus 167 t~~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~---g~Y~Sv~eF~~DV~LIFsNA~ 243 (709)
.....++.|+.||..|++++.+++|++||+. .+||||+||++||||+||++||++ +.|.++++|++||+|||.||+
T Consensus 78 ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~ 156 (207)
T 3u5n_A 78 LSPVDQRKCERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCE 156 (207)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHH
Confidence 3456688999999999999999999999987 799999999999999999999997 799999999999999999999
Q ss_pred ccCC-----------------CCCHHHHHHHHHHHHHHHHHHhhhcCC
Q 005202 244 QYNA-----------------PDTIYFRQARSIHELAKKNFENLRQDS 274 (709)
Q Consensus 244 ~YN~-----------------~dS~Vyk~A~~Le~~fek~~eeL~~~~ 274 (709)
+||+ +++.|+++|..|+.+|++.|+++..+.
T Consensus 157 ~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~~ 204 (207)
T 3u5n_A 157 RFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSDR 204 (207)
T ss_dssp HHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999 999999999999999999999998753
No 33
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.85 E-value=7.7e-22 Score=206.69 Aligned_cols=103 Identities=23% Similarity=0.445 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCC
Q 005202 169 LPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248 (709)
Q Consensus 169 ~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~ 248 (709)
..+..+|..||+.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||++
T Consensus 46 ~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 125 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGP 125 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhh
Q 005202 249 DTIYFRQARSIHELAKKNFENLR 271 (709)
Q Consensus 249 dS~Vyk~A~~Le~~fek~~eeL~ 271 (709)
++.||.+|..|++.|++.|.++.
T Consensus 126 ~s~i~~~A~~L~~~~~~~~~~~~ 148 (292)
T 3aad_A 126 KHSLTQISQSMLDLCDEKLKEKE 148 (292)
T ss_dssp SSHHHHHHTHHHHTTTTTGGGSH
T ss_pred chHHHHHHHHHHHHHHhhhhcch
Confidence 99999999999999998887653
No 34
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.85 E-value=7.8e-22 Score=195.00 Aligned_cols=101 Identities=11% Similarity=0.149 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccC--CCCCHHHHHHHHcCC---CCCCHHHHHHHHHHHHHhhh
Q 005202 169 LPDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIE--HPMDFGTVRNKLANG---AYATLEQFEKDVFLICSNAM 243 (709)
Q Consensus 169 ~p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK--~PMDLsTIkkKLk~g---~Y~Sv~eF~~DV~LIFsNA~ 243 (709)
...++.|..||..|++|+.+++|.+||+ |+||+||+ +||||+||++||+++ .|.++++|++||+|||+||+
T Consensus 75 ~~~~~~c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~ 150 (189)
T 2ro1_A 75 PANQRKCERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFN 150 (189)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999998 78999998 899999999999999 99999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhhcCC
Q 005202 244 QYNAPDTIYFRQARSIHELAKKNFENLRQDS 274 (709)
Q Consensus 244 ~YN~~dS~Vyk~A~~Le~~fek~~eeL~~~~ 274 (709)
+|| +++.||++|..|++.|++.|+++..+.
T Consensus 151 ~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~ 180 (189)
T 2ro1_A 151 KLT-EDKADVQSIIGLQRFFETRMNEAFGDT 180 (189)
T ss_dssp HHC-CSSCSSHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHC-CCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999 588889999999999999999998754
No 35
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.85 E-value=2.5e-21 Score=200.05 Aligned_cols=105 Identities=28% Similarity=0.470 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHH-HHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCC
Q 005202 170 PDKKLLLFILDR-LQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAP 248 (709)
Q Consensus 170 p~kklL~~ILe~-L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~ 248 (709)
.+..+|..++.. |++++.+++|++||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||++||++
T Consensus 136 ~~~~il~~i~~~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~ 215 (265)
T 3uv5_A 136 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGP 215 (265)
T ss_dssp HHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 345566666644 7788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhcCC
Q 005202 249 DTIYFRQARSIHELAKKNFENLRQDS 274 (709)
Q Consensus 249 dS~Vyk~A~~Le~~fek~~eeL~~~~ 274 (709)
+|.||++|..|+..|++.|.++....
T Consensus 216 ~s~~~~~A~~l~~~~~~~~~~~~~~~ 241 (265)
T 3uv5_A 216 ESQYTKTAQEIVNVCYQTLTEYDEHL 241 (265)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887543
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=197.73 Aligned_cols=102 Identities=28% Similarity=0.509 Sum_probs=93.2
Q ss_pred HHHHHHHHH-HHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCC
Q 005202 172 KKLLLFILD-RLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDT 250 (709)
Q Consensus 172 kklL~~ILe-~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS 250 (709)
..+|..++. .|+.++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||++||+++|
T Consensus 171 ~~~l~~i~~~~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s 250 (292)
T 3aad_A 171 SFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 250 (292)
T ss_dssp HHHHHHHHHHTGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHhhhhhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 344555443 4778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Q 005202 251 IYFRQARSIHELAKKNFENLRQD 273 (709)
Q Consensus 251 ~Vyk~A~~Le~~fek~~eeL~~~ 273 (709)
.||.+|..|+..|++.++++...
T Consensus 251 ~i~~~A~~L~~~~~~~~~~~~~~ 273 (292)
T 3aad_A 251 QYTKTAQEIVNVCYQTLTEYDEH 273 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887653
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.80 E-value=3.7e-20 Score=195.75 Aligned_cols=87 Identities=28% Similarity=0.523 Sum_probs=83.8
Q ss_pred cCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHH
Q 005202 184 KKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELA 263 (709)
Q Consensus 184 k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS~Vyk~A~~Le~~f 263 (709)
++..+++|++||++..+||||+||++||||+||++||+++.|.++++|++||+|||.||++||+++|.||.+|..|+..|
T Consensus 177 ~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f 256 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYF 256 (311)
T ss_dssp SSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 005202 264 KKNFENL 270 (709)
Q Consensus 264 ek~~eeL 270 (709)
++.|++.
T Consensus 257 ~~~~~~~ 263 (311)
T 2r0y_A 257 NYLIQKE 263 (311)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999873
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.80 E-value=5.2e-20 Score=198.08 Aligned_cols=86 Identities=27% Similarity=0.517 Sum_probs=83.3
Q ss_pred CCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHH
Q 005202 185 KDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPDTIYFRQARSIHELAK 264 (709)
Q Consensus 185 ~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~dS~Vyk~A~~Le~~fe 264 (709)
+..+++|++||+...+||||+||++||||+||++||+++.|.++++|+.||+|||.||++||+++|.||.+|..|+..|+
T Consensus 228 ~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~ 307 (361)
T 2r10_A 228 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 307 (361)
T ss_dssp SCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 005202 265 KNFENL 270 (709)
Q Consensus 265 k~~eeL 270 (709)
+.|++.
T Consensus 308 ~~~~~~ 313 (361)
T 2r10_A 308 YLIQKE 313 (361)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999873
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.76 E-value=4.4e-19 Score=190.86 Aligned_cols=101 Identities=21% Similarity=0.291 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHHHcCC--CCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCC-CHHHHHHHHHHHHHhhhcc
Q 005202 169 LPDKKLLLFILDRLQKKD--TYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYA-TLEQFEKDVFLICSNAMQY 245 (709)
Q Consensus 169 ~p~kklL~~ILe~L~k~~--~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~-Sv~eF~~DV~LIFsNA~~Y 245 (709)
..+..+|..+|+.+.+.. .+++|++||+...+||||+||++||||+||++|| ..|. ++++|+.||+|||.||++|
T Consensus 77 ~~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~y 154 (361)
T 2r10_A 77 PKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAY 154 (361)
T ss_dssp TTHHHHHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhc
Confidence 356788999999886643 5789999999999999999999999999999998 4555 8999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhh
Q 005202 246 NAPDTIYFRQARSIHELAKKNFENLR 271 (709)
Q Consensus 246 N~~dS~Vyk~A~~Le~~fek~~eeL~ 271 (709)
|+++|.||++|..|+++|++.|.+..
T Consensus 155 N~~~s~i~~~a~~l~~~~~~~~~k~k 180 (361)
T 2r10_A 155 NEYDSLIVKNSMQVVMLIEFEVLKAK 180 (361)
T ss_dssp BCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999988764
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.75 E-value=8.2e-19 Score=185.49 Aligned_cols=100 Identities=22% Similarity=0.327 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHcC--CCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCC-CHHHHHHHHHHHHHhhhccC
Q 005202 170 PDKKLLLFILDRLQKK--DTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYA-TLEQFEKDVFLICSNAMQYN 246 (709)
Q Consensus 170 p~kklL~~ILe~L~k~--~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~-Sv~eF~~DV~LIFsNA~~YN 246 (709)
.++..|..+|..+.+. ..+++|++||+...+||||+||++||||+||++|| ..|. ++++|++||+|||.||++||
T Consensus 28 ~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN 105 (311)
T 2r0y_A 28 KFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYN 105 (311)
T ss_dssp THHHHHHHHHHHHHHHSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHcc
Confidence 4566777777776653 36789999999999999999999999999999999 5555 89999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhh
Q 005202 247 APDTIYFRQARSIHELAKKNFENLR 271 (709)
Q Consensus 247 ~~dS~Vyk~A~~Le~~fek~~eeL~ 271 (709)
+++|.||++|..|+++|++.|.+.+
T Consensus 106 ~~~s~i~~~A~~l~~~~~~~~~k~k 130 (311)
T 2r0y_A 106 EYDSLIVKNSMQVVMLIEFEVLKAK 130 (311)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999988764
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=158.30 Aligned_cols=103 Identities=17% Similarity=0.355 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHHcCCC------CCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhh
Q 005202 169 LPDKKLLLFILDRLQKKDT------YGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNA 242 (709)
Q Consensus 169 ~p~kklL~~ILe~L~k~~~------s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA 242 (709)
...+.+|..|+..|..+.+ +.+|++.|+.. |+||. ++||+|.+|++||+.+.|+++++|..||.|||.||
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NA 81 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERA 81 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 3468889999999998753 34999999988 89998 99999999999999999999999999999999999
Q ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHhhhcCCC
Q 005202 243 MQYNAPDTIYFRQARSIHELAKKNFENLRQDSD 275 (709)
Q Consensus 243 ~~YN~~dS~Vyk~A~~Le~~fek~~eeL~~~~e 275 (709)
++||.++|+||.+|..|+.+|.+.+.++....+
T Consensus 82 r~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~g~ 114 (147)
T 3iu6_A 82 RRMNRTDSEIYEDAVELQQFFIKIRDELCKNGE 114 (147)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999877643
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.42 E-value=1.7e-13 Score=135.14 Aligned_cols=98 Identities=16% Similarity=0.236 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCcccccCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhccCCCC
Q 005202 170 PDKKLLLFILDRLQKKDTYGVFSEPVDPEELPDYCEVIEHPMDFGTVRNKLANGAYATLEQFEKDVFLICSNAMQYNAPD 249 (709)
Q Consensus 170 p~kklL~~ILe~L~k~~~s~~F~ePVd~~~~PDYy~IIK~PMDLsTIkkKLk~g~Y~Sv~eF~~DV~LIFsNA~~YN~~d 249 (709)
.++..|+.||..|..++.+++|+. | .++.||||.+|++||+.+.|.++.+|+.||.|||.||..||+.+
T Consensus 75 el~~~l~~vl~~L~~~~~s~~~~~---------y--~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~ 143 (183)
T 3lqh_A 75 ELQISLKQVLTALLNSRTTSHLLR---------Y--RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQ 143 (183)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHT---------C--CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhccccHhhhh---------h--hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCC
Confidence 346668999999999999999977 3 25999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 005202 250 TIYFRQARSIHELAKKNFENLRQDSDDNE 278 (709)
Q Consensus 250 S~Vyk~A~~Le~~fek~~eeL~~~~e~eE 278 (709)
+++.+++..|+.+|.+.|+++..-....+
T Consensus 144 ~e~~~ag~~l~~~f~~~l~~vfpwf~~~~ 172 (183)
T 3lqh_A 144 PEIKKANSMVKSFFIRQMERVFPWFSVKK 172 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSCGGG
T ss_pred hhhhhhhhHHHHHHHHHHHHHCCCCCccc
Confidence 99999999999999999999988664443
No 43
>1dum_A Magainin 2; antibiotic, dimer, amphipathic helix, membrane, vesicle, bilayer, antimicrobial protein; NMR {Synthetic} SCOP: j.4.1.1 PDB: 2mag_A
Probab=53.71 E-value=0.41 Score=32.13 Aligned_cols=17 Identities=35% Similarity=0.712 Sum_probs=13.0
Q ss_pred hhcCCCCCcCCcccccC
Q 005202 456 RCLPAGVRFGPGWVVEN 472 (709)
Q Consensus 456 ~~lp~~~~fg~gwvge~ 472 (709)
+.|-..-+||-.||||-
T Consensus 4 kylhsakkfgkawvgei 20 (26)
T 1dum_A 4 KYLHSAKKFGKAWVGEI 20 (26)
T ss_dssp STTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 34556678999999983
Done!