BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005203
(709 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 290 bits (741), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 177/489 (36%), Positives = 286/489 (58%), Gaps = 34/489 (6%)
Query: 236 ICSGLRGC--CFGIANMI-----------LVKRMRETLYSALLLQDISFFDSETVGDLTS 282
+C GL C AN I +V R+R +L+S++L Q+++FFD G+L +
Sbjct: 64 LCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELIN 123
Query: 283 RLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYG 342
RL SD + R + +L+ LR Q + + + +S L L + ++ + +IYG
Sbjct: 124 RLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYG 183
Query: 343 LYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSA 402
Y +K K+ Q+ A A ++A+E +RTVR +G E E+++Y + + + +++
Sbjct: 184 RYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 243
Query: 403 A----YGFWNLCFNMLYHSTQVIAVLI-GGMFIMRGNITAEQLTKFILYSEWLIYSTWWV 457
A +G L N++ V++VL GG+ + ++T +L+ F++Y+ W+ S +
Sbjct: 244 ARAGFFGATGLSGNLI-----VLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGL 298
Query: 458 GDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKL--QRLMGRIDFVDVSFRYSSREMV 515
S LM+ +GA ++++L++ P F ++G L + G ++F +V F Y +R V
Sbjct: 299 SSFYSELMKGLGAGGRLWELLEREPKLPF-NEGVILNEKSFQGALEFKNVHFAYPARPEV 357
Query: 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLR 575
P+ Q ++S+ G V A+ G SGSGKST+++LLLRLY+P +G I +DG I++++ WLR
Sbjct: 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417
Query: 576 GRIGFVGQEPKLFRMDISSNISYGC--TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLV 633
+IG V QEP LF I+ NI+YG + ++I+ A+ A A FI + P G+ T+V
Sbjct: 418 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477
Query: 634 DDD--LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRR 691
+ LLSGGQKQRIAIARA+L++P IL+LDEATSALDAE+E+ ++ L + M R
Sbjct: 478 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL----MDGR 533
Query: 692 TVLVIAHRL 700
TVLVIAHRL
Sbjct: 534 TVLVIAHRL 542
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 287 bits (735), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 176/489 (35%), Positives = 285/489 (58%), Gaps = 34/489 (6%)
Query: 236 ICSGLRGC--CFGIANMI-----------LVKRMRETLYSALLLQDISFFDSETVGDLTS 282
+C GL C AN I +V R+R +L+S++L Q+++FFD G+L +
Sbjct: 95 LCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELIN 154
Query: 283 RLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYG 342
RL SD + R + +L+ LR Q + + + +S L L + ++ + +IYG
Sbjct: 155 RLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYG 214
Query: 343 LYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSA 402
Y +K K+ Q+ A A ++A+E +RTVR +G E E+++Y + + + +++
Sbjct: 215 RYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 274
Query: 403 A----YGFWNLCFNMLYHSTQVIAVLI-GGMFIMRGNITAEQLTKFILYSEWLIYSTWWV 457
A +G L N++ V++VL GG+ + ++T +L+ F++Y+ W+ S +
Sbjct: 275 ARAGFFGATGLSGNLI-----VLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGL 329
Query: 458 GDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKL--QRLMGRIDFVDVSFRYSSREMV 515
S LM+ +GA ++++L++ P F ++G L + G ++F +V F Y +R V
Sbjct: 330 SSFYSELMKGLGAGGRLWELLEREPKLPF-NEGVILNEKSFQGALEFKNVHFAYPARPEV 388
Query: 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLR 575
P+ Q ++S+ G V A+ G SGSGKST+++LLLRLY+P +G I +DG I++++ WLR
Sbjct: 389 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 448
Query: 576 GRIGFVGQEPKLFRMDISSNISYGC--TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLV 633
+IG V QEP LF I+ NI+YG + ++I+ A+ A A FI + P G+ T+V
Sbjct: 449 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 508
Query: 634 DDD--LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRR 691
+ LLSGGQKQRIAIARA+L++P IL+LDEATSALDAE+E+ ++ L + M R
Sbjct: 509 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL----MDGR 564
Query: 692 TVLVIAHRL 700
TVLVIAH L
Sbjct: 565 TVLVIAHHL 573
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 267 bits (683), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 158/454 (34%), Positives = 252/454 (55%), Gaps = 14/454 (3%)
Query: 253 VKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGA 312
+ ++R+ + A++ Q+I +FD VG+L +RL D +++ IG+ + + + + G
Sbjct: 140 IHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGG 199
Query: 313 LIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQE---ITASANEVAQETFSL 369
I W L L L I L L G++ K + + A A VA+E +
Sbjct: 200 FIIGFTRGWKLTLVILAISPVLG---LSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAA 256
Query: 370 MRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMF 429
+RTV +G +K+E++RY + L + + ++++ +L +++ +A G
Sbjct: 257 IRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSL 316
Query: 430 IMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPS-DQFMS 488
++ + Q+ +S N+ + + GA+ +VF+++D PS D F
Sbjct: 317 VISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSK 376
Query: 489 KGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLL 548
G K + G ++F ++ F Y SR+ V +L+ +N+ V G+ VA+ G SG GKST V L+
Sbjct: 377 SGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Query: 549 LRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQD 608
RLY+P +G + IDG I+ +++++LR IG V QEP LF I+ NI YG +D+ +
Sbjct: 437 QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG-REDVTMDE 495
Query: 609 IEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATS 666
IE A K+A A+DFIM LP ++TLV + LSGGQKQRIAIARA++R+P IL+LDEATS
Sbjct: 496 IEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATS 555
Query: 667 ALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700
ALD ESE ++ L R RT +VIAHRL
Sbjct: 556 ALDTESEAVVQAALDKAREG----RTTIVIAHRL 585
Score = 255 bits (652), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 177/491 (36%), Positives = 267/491 (54%), Gaps = 30/491 (6%)
Query: 226 LLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDS--ETVGDLTSR 283
L ++L + S I L+G FG A IL KR+R ++ ++L QD+S+FD T G LT+R
Sbjct: 754 LFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTR 813
Query: 284 LGSDCQQVSRVIGNDLNLILRNVLQ-GTGALIYLIVLSWPLGLCTLMICS--ALAGLMLI 340
L +D QV G+ L +I +N+ GTG +I LI W L L L I A+AG++ +
Sbjct: 814 LANDAAQVKGATGSRLAVIFQNIANLGTGIIISLI-YGWQLTLLLLAIVPIIAIAGVVEM 872
Query: 341 YGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQ 400
+ +A K +E+ S ++A E RTV E++ Y L +++
Sbjct: 873 K-MLSGQALKDKKELEGSG-KIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKK 930
Query: 401 SAAYGF-WNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKF---ILYSEWLIYSTWW 456
+ +G ++ M+Y S F + +QL F +L +++
Sbjct: 931 AHVFGITFSFTQAMMYFS-------YAACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMA 983
Query: 457 VGDNLS---SLMQSVGASEKVFQLMDLMPS-DQFMSKGKKLQRLMGRIDFVDVSFRYSSR 512
VG S ++ ++ + ++++ P D + ++G K L G + F V F Y +R
Sbjct: 984 VGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTR 1043
Query: 513 EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK 572
+PVLQ +++ V G+ +A+ G SG GKST+V LL R Y+P G + +DG IK+++++
Sbjct: 1044 PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQ 1103
Query: 573 WLRGRIGFVGQEPKLFRMDISSNISYG-CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYET 631
WLR ++G V QEP LF I+ NI+YG ++ + ++I AAK+A H FI SLP Y T
Sbjct: 1104 WLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNT 1163
Query: 632 LVDDD--LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMT 689
V D LSGGQKQRIAIARA++R P IL+LDEATSALD ESE ++ L R
Sbjct: 1164 RVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREG--- 1220
Query: 690 RRTVLVIAHRL 700
RT +VIAHRL
Sbjct: 1221 -RTCIVIAHRL 1230
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 267 bits (683), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 158/454 (34%), Positives = 252/454 (55%), Gaps = 14/454 (3%)
Query: 253 VKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGA 312
+ ++R+ + A++ Q+I +FD VG+L +RL D +++ IG+ + + + + G
Sbjct: 140 IHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGG 199
Query: 313 LIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQE---ITASANEVAQETFSL 369
I W L L L I L L G++ K + + A A VA+E +
Sbjct: 200 FIIGFTRGWKLTLVILAISPVLG---LSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAA 256
Query: 370 MRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMF 429
+RTV +G +K+E++RY + L + + ++++ +L +++ +A G
Sbjct: 257 IRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSL 316
Query: 430 IMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPS-DQFMS 488
++ + Q+ +S N+ + + GA+ +VF+++D PS D F
Sbjct: 317 VISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSK 376
Query: 489 KGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLL 548
G K + G ++F ++ F Y SR+ V +L+ +N+ V G+ VA+ G SG GKST V L+
Sbjct: 377 SGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Query: 549 LRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQD 608
RLY+P +G + IDG I+ +++++LR IG V QEP LF I+ NI YG +D+ +
Sbjct: 437 QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG-REDVTMDE 495
Query: 609 IEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATS 666
IE A K+A A+DFIM LP ++TLV + LSGGQKQRIAIARA++R+P IL+LDEATS
Sbjct: 496 IEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATS 555
Query: 667 ALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700
ALD ESE ++ L R RT +VIAHRL
Sbjct: 556 ALDTESEAVVQAALDKAREG----RTTIVIAHRL 585
Score = 256 bits (654), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 177/488 (36%), Positives = 269/488 (55%), Gaps = 24/488 (4%)
Query: 226 LLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDS--ETVGDLTSR 283
L ++L + S I L+G FG A IL KR+R ++ ++L QD+S+FD T G LT+R
Sbjct: 754 LFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTR 813
Query: 284 LGSDCQQVSRVIGNDLNLILRNVLQ-GTGALIYLIVLSWPLGLCTLMICS--ALAGLMLI 340
L +D QV G+ L +I +N+ GTG +I LI W L L L I A+AG++ +
Sbjct: 814 LANDAAQVKGATGSRLAVIFQNIANLGTGIIISLI-YGWQLTLLLLAIVPIIAIAGVVEM 872
Query: 341 YGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQ 400
+ +A K +E+ S ++A E RTV E++ Y L +++
Sbjct: 873 K-MLSGQALKDKKELEGSG-KIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKK 930
Query: 401 SAAYGF-WNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGD 459
+ +G ++ M+Y S A G + + +T E + +L +++ VG
Sbjct: 931 AHVFGITFSFTQAMMYFSYAA-AFRFGAYLVTQQLMTFENV---LLVFSAIVFGAMAVGQ 986
Query: 460 NLS---SLMQSVGASEKVFQLMDLMPS-DQFMSKGKKLQRLMGRIDFVDVSFRYSSREMV 515
S ++ ++ + ++++ P D + ++G K L G + F V F Y +R +
Sbjct: 987 VSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSI 1046
Query: 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLR 575
PVLQ +++ V G+ +A+ G SG GKST+V LL R Y+P G + +DG IK+++++WLR
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106
Query: 576 GRIGFVGQEPKLFRMDISSNISYG-CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVD 634
++G V QEP LF I+ NI+YG ++ + ++I AAK+A H FI SLP Y T V
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166
Query: 635 DD--LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRT 692
D LSGGQKQRIAIARA++R P IL+LDEATSALD ESE ++ L R RT
Sbjct: 1167 DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREG----RT 1222
Query: 693 VLVIAHRL 700
+VIAHRL
Sbjct: 1223 CIVIAHRL 1230
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 233 bits (594), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 158/459 (34%), Positives = 250/459 (54%), Gaps = 28/459 (6%)
Query: 255 RMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALI 314
R+R ++L Q+IS+FD+ G L ++L + ++V G+ + + + + Q I
Sbjct: 170 RLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFI 229
Query: 315 YLIVLSWPLGLCTLMIC--SALAGLMLIYGLYQKKAAKLVQEIT--ASANEVAQETFSLM 370
SW L L L + AL G + + + + ++E A A +V +ET S +
Sbjct: 230 VAFTHSWQLTLVMLAVTPIQALCG----FAIAKSMSTFAIRETLRYAKAGKVVEETISSI 285
Query: 371 RTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQV---IAVLIGG 427
RTV + E++RY + + + + F + F + S + +A IG
Sbjct: 286 RTVVSLNGLRYELERYSTAVEEAKKAGVLKGL---FLGISFGAMQASNFISFALAFYIGV 342
Query: 428 MFIMRGNIT-AEQLTKFILYSEWLIYST--WWVGDNLSSLMQSVGASEKVFQLMDLMPS- 483
++ G++ + LT F S ++ S G L+ L + GA+ +++++D P
Sbjct: 343 GWVHDGSLNFGDMLTTF---SSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVI 399
Query: 484 DQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKST 543
D G+K ++ G I +V F Y SR VP+L+ +N+ VN G+ VA+ G SG GKST
Sbjct: 400 DSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKST 459
Query: 544 LVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQD 603
+++LLLR Y+ G+I IDG ++++++++LR + V QEP LF I NIS G +
Sbjct: 460 IISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLG-KEG 518
Query: 604 IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILIL 661
I ++++ A K A A FI +LP+GY TLV D LSGGQKQRIAIARA++R+P IL+L
Sbjct: 519 ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLL 578
Query: 662 DEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700
DEATSALDAESE G+++ RT ++IAHRL
Sbjct: 579 DEATSALDAESE----GIVQQALDKAAKGRTTIIIAHRL 613
Score = 216 bits (550), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 155/492 (31%), Positives = 245/492 (49%), Gaps = 14/492 (2%)
Query: 226 LLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDS--ETVGDLTSR 283
+ ++L GICS L GIA+ L + +R L+ +L Q I FFDS G +++R
Sbjct: 799 MFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTR 858
Query: 284 LGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALA-GLMLIYG 342
L +D + I + ++ ++ + W + L + I +A G L
Sbjct: 859 LATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGR 918
Query: 343 LYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSA 402
+ K K E A + ++A E +RTV+ E + + L ++++
Sbjct: 919 RFTGKNVKSASEF-ADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAF 977
Query: 403 AYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKF-ILYSEWLIYSTW-WVGDN 460
G C + + + A +G I+ T + + ++Y+ + ST +
Sbjct: 978 IQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSY 1037
Query: 461 LSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQH 520
++ A +F ++ + +S + ++L G++ F +V F Y R + +L+
Sbjct: 1038 FPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKG 1097
Query: 521 VNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580
++ SV PG+ +A+ G SG GKST+V LL R Y+ G+I IDG IK ++ + R +I
Sbjct: 1098 LSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAI 1157
Query: 581 VGQEPKLFRMDISSNISYGC-TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DL 637
V QEP LF I+ NI YG + +E AA+ A H+FI LP G+ET V D
Sbjct: 1158 VSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQ 1217
Query: 638 LSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIA 697
LSGGQKQRIAIARA++R+P IL+LDEATSALD ESE ++ L R RT +VIA
Sbjct: 1218 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREG----RTCIVIA 1273
Query: 698 HRLISTALSFDC 709
HRL +T ++ DC
Sbjct: 1274 HRL-NTVMNADC 1284
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 145/478 (30%), Positives = 252/478 (52%), Gaps = 11/478 (2%)
Query: 226 LLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLG 285
++I L + GI S + C + +V MR L+ ++ ++FFD ++ G L SR+
Sbjct: 70 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT 129
Query: 286 SDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQ 345
D +QV+ L ++R G I + SW L + +++ ++ + +
Sbjct: 130 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF 189
Query: 346 KKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYG 405
+ +K +Q A++ + V ++G ++ E KR+ K+ ++ +A
Sbjct: 190 RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 249
Query: 406 FWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLM 465
+ ++ + + ++TA +T L+ + + +
Sbjct: 250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 309
Query: 466 QSVGASEKVFQLMDLMPSDQFMSKGKK-LQRLMGRIDFVDVSFRYSSREMVPVLQHVNIS 524
+ + A + +F ++D S+Q +GK+ + R G ++F +V+F Y RE VP L+++N+
Sbjct: 310 RGMAACQTLFAILD---SEQEKDEGKRVIDRATGDLEFRNVTFTYPGRE-VPALRNINLK 365
Query: 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQE 584
+ G+ VA+ G SGSGKST+ +L+ R Y+ G IL+DG ++E + LR ++ V Q
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN 425
Query: 585 PKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD--LLSGGQ 642
LF +++NI+Y T++ ++ IE AA+ AYA DFI + +G +T++ ++ LLSGGQ
Sbjct: 426 VHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485
Query: 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700
+QRIAIARA+LRD ILILDEATSALD ESE I+ L ++ + RT LVIAHRL
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN----RTSLVIAHRL 539
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 226 bits (575), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 144/478 (30%), Positives = 253/478 (52%), Gaps = 11/478 (2%)
Query: 226 LLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLG 285
++I L + GI S + C + +V MR L+ ++ +SFFD ++ G L SR+
Sbjct: 70 VVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRIT 129
Query: 286 SDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQ 345
D +QV+ L ++R G I + SW L + +++ ++ + +
Sbjct: 130 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRF 189
Query: 346 KKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYG 405
+ +K +Q A++ + V ++G ++ E KR+ ++ ++ +A
Sbjct: 190 RNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSASS 249
Query: 406 FWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLM 465
+ ++ + + ++TA +T L+ + + +
Sbjct: 250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 309
Query: 466 QSVGASEKVFQLMDLMPSDQFMSKGKK-LQRLMGRIDFVDVSFRYSSREMVPVLQHVNIS 524
+ + A + +F ++D S+Q +GK+ ++R G ++F +V+F Y R+ VP L+++N+
Sbjct: 310 RGMAACQTLFTILD---SEQEKDEGKRVIERATGDVEFRNVTFTYPGRD-VPALRNINLK 365
Query: 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQE 584
+ G+ VA+ G SGSGKST+ +L+ R Y+ G+IL+DG ++E + LR ++ V Q
Sbjct: 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQN 425
Query: 585 PKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD--LLSGGQ 642
LF +++NI+Y T+ ++ IE AA+ AYA DFI + +G +T++ ++ LLSGGQ
Sbjct: 426 VHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQ 485
Query: 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700
+QRIAIARA+LRD ILILDEATSALD ESE I+ L ++ + RT LVIAHRL
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN----RTSLVIAHRL 539
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 221 bits (564), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 150/485 (30%), Positives = 242/485 (49%), Gaps = 12/485 (2%)
Query: 220 FHRNVRLLIL-LCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVG 278
F R + +IL L G+ C + +V +MR L++ + + FFD E+ G
Sbjct: 63 FLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTG 122
Query: 279 DLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGLM 338
L SR+ D +QV+ L I+R G L + SW L L +++ +A +
Sbjct: 123 GLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAI 182
Query: 339 LIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINL 398
+K ++ +Q A++ + V YG ++ E KR+ + +
Sbjct: 183 SFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTM 242
Query: 399 RQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVG 458
+ +A + M+ + + + +R +T T L+ +
Sbjct: 243 KLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALT 302
Query: 459 DNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGK-KLQRLMGRIDFVDVSFRYSSREMVPV 517
S + + A + +F LMDL + GK + +R+ G +D DV+F Y +E P
Sbjct: 303 SVTSEFQRGMAACQTLFGLMDL---ETERDNGKYEAERVNGEVDVKDVTFTYQGKEK-PA 358
Query: 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577
L HV+ S+ G+ VA+ G SGSGKST+ NL R Y+ +G I +DG +++ + LR
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418
Query: 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD- 636
V Q LF I++NI+Y + ++ IE AA+QA+A +FI ++P G +T++ ++
Sbjct: 419 FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENG 478
Query: 637 -LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLV 695
LSGGQ+QR+AIARA+LRD +LILDEATSALD ESE I+ L ++ + +TVLV
Sbjct: 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN----KTVLV 534
Query: 696 IAHRL 700
IAHRL
Sbjct: 535 IAHRL 539
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 221 bits (563), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 163/455 (35%), Positives = 236/455 (51%), Gaps = 24/455 (5%)
Query: 256 MRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIY 315
+R+ LY+ L F+ + VG + SR+ +D +Q I L I + + AL
Sbjct: 96 IRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSI 155
Query: 316 LIVLSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVA---QETFSLMRT 372
+ L L L L I ++ +Y ++ + KL +E + + EV E +
Sbjct: 156 MFFLDVKLTLAALFIFPFY--ILTVY-VFFGRLRKLTRERSQALAEVQGFLHERVQGISV 212
Query: 373 VRVYGTEKQEVKRYKHWLGKLADINLRQS--AAYGFWNLCFNMLYHSTQVIAVLIGGMFI 430
V+ + E E K + L+ + AY F N + +I + +G
Sbjct: 213 VKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFA--AINTVTDIGPIIVIGVGAYLA 270
Query: 431 MRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKG 490
+ G+IT L F+ Y E L + + ++L QS + ++VFQL+D D + G
Sbjct: 271 ISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID---EDYDIKNG 327
Query: 491 KKLQRL---MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNL 547
Q + GRID VSF+Y+ E P+L+ +N+S+ GE VA G+SG GKSTL+NL
Sbjct: 328 VGAQPIEIKQGRIDIDHVSFQYNDNE-APILKDINLSIEKGETVAFVGMSGGGKSTLINL 386
Query: 548 LLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQ 607
+ R Y+ T+GQILIDG IK+ LR +IG V Q+ LF + NI G ++
Sbjct: 387 IPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEE 446
Query: 608 DIEWAAKQAYAHDFIMSLPSGYETLVDDD--LLSGGQKQRIAIARAILRDPTILILDEAT 665
+E AAK A AHDFIM+LP GY+T V + LSGGQKQR++IAR L +P ILILDEAT
Sbjct: 447 VVE-AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEAT 505
Query: 666 SALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700
SALD ESE I+ L + D RT L++AHRL
Sbjct: 506 SALDLESESIIQEALDVLSKD----RTTLIVAHRL 536
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 135/451 (29%), Positives = 237/451 (52%), Gaps = 10/451 (2%)
Query: 252 LVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTG 311
+V R+R+ L+ L + FFD GD+ SR+ +D ++ V+GN + ++ G
Sbjct: 108 VVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAG 167
Query: 312 ALIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMR 371
A+I + ++ L L TL I + I +K Q + N + +E S +
Sbjct: 168 AVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLT 227
Query: 372 TVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIM 431
++++ E++E++++ L + + G NM+ + + GG +
Sbjct: 228 VIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLAL 287
Query: 432 RGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGK 491
+ IT + FI YS + + + + ++ ++E++F+++DL ++
Sbjct: 288 KDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL-EEEKDDPDAV 346
Query: 492 KLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL 551
+L+ + G I+F +V F Y ++ PVL+ + + PG+ VA+ G +GSGK+T+VNLL+R
Sbjct: 347 ELREVRGEIEFKNVWFSYDKKK--PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404
Query: 552 YEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEW 611
Y+ GQIL+DG I+++ LR IG V Q+ LF + N+ YG ++I+
Sbjct: 405 YDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYG-NPGATDEEIKE 463
Query: 612 AAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALD 669
AAK ++ FI LP GYET++ D + LS GQ+Q +AI RA L +P ILILDEATS +D
Sbjct: 464 AAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
Query: 670 AESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700
++E +I+ + + M +T ++IAHRL
Sbjct: 524 TKTEKSIQAAMWKL----MEGKTSIIIAHRL 550
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 139/463 (30%), Positives = 241/463 (52%), Gaps = 23/463 (4%)
Query: 226 LLILLCVTSGICSGLRGCCF--GIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSR 283
+L+L+ G G+ GC A+ +R L+ +L IS + L +R
Sbjct: 67 ILMLIVALIGAVGGI-GCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITR 125
Query: 284 LGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYGL 343
L +D Q+ ++ L +++R L G ++ + ++ L + + + ++L++
Sbjct: 126 LTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFL---IPPIVLLFVW 182
Query: 344 YQKKAAKL---VQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQ 400
KK L +QE T N V +E +R VR + E+ E + ++ A+ +LR+
Sbjct: 183 LTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRK-----ANESLRR 237
Query: 401 SAAYGFWNLCFNM----LYHSTQVIAVL-IGGMFIMRGNITAEQLTKFILYSEWLIYSTW 455
S F + F + + +IAVL GG+ + + + + Y +++S
Sbjct: 238 SIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLM 297
Query: 456 WVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMV 515
+G+ L+ ++++ ++++V ++++ P+ + L + G + F +V FRY
Sbjct: 298 MIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFE-NTD 356
Query: 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLR 575
PVL VN SV PG +VA+ G +GSGKSTL+NL+ RL +P G++ +D ++ V +K LR
Sbjct: 357 PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR 416
Query: 576 GRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVD- 634
G I V QE LF I N+ +G +D +I AAK A HDFI+SLP GY++ V+
Sbjct: 417 GHISAVPQETVLFSGTIKENLKWG-REDATDDEIVEAAKIAQIHDFIISLPEGYDSRVER 475
Query: 635 -DDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNI 676
SGGQKQR++IARA+++ P +LILD+ TS++D +E I
Sbjct: 476 GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI 518
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 182 bits (461), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 136/207 (65%), Gaps = 4/207 (1%)
Query: 496 LMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT 555
L G + F DVSF Y +R V VLQ + ++ PGEV A+ G +GSGKST+ LL LY+PT
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 556 NGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQ 615
GQ+L+DG P+ + + ++L ++ VGQEP++F + NI+YG TQ ++I AA +
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 616 AYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673
+ AH FI LP GY+T VD+ LSGGQ+Q +A+ARA++R P +LILD+ATSALDA S+
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 674 HNIKGVLRAVRSDTMTRRTVLVIAHRL 700
++ +L S R+VL+I L
Sbjct: 191 LQVEQLL--YESPERYSRSVLLITQHL 215
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 133/207 (64%), Gaps = 4/207 (1%)
Query: 496 LMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT 555
+ G + F DVSF Y + V VLQ + ++ PG+V A+ G +GSGKST+ LL LY+PT
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 556 NGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQ 615
G++L+DG P+ + D +L ++ VGQEP LF NI+YG T+ ++I A +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 616 AYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673
+ AHDFI P GY+T V + + LSGGQ+Q +A+ARA++R P +LILD+ATSALDA ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQ 192
Query: 674 HNIKGVLRAVRSDTMTRRTVLVIAHRL 700
++ +L S RTVL+I H+L
Sbjct: 193 LRVQRLL--YESPEWASRTVLLITHQL 217
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 131/207 (63%), Gaps = 4/207 (1%)
Query: 496 LMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT 555
+ G + F DVSF Y + V VLQ + ++ PG+V A+ G +GSGKST+ LL LY+PT
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 556 NGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQ 615
G++L+DG P+ + D +L ++ VGQEP LF NI+YG T+ ++I A +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 616 AYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673
+ AHDFI P GY+T V + + LSGGQ+Q +A+ARA++R P +LILD ATSALDA ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 674 HNIKGVLRAVRSDTMTRRTVLVIAHRL 700
++ +L S RTVL+I +L
Sbjct: 193 LRVQRLL--YESPEWASRTVLLITQQL 217
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 130/207 (62%), Gaps = 4/207 (1%)
Query: 496 LMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT 555
+ G + F DVSF Y + V VLQ + ++ PG+V A+ G +GSGKST+ LL LY+PT
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 556 NGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQ 615
G++L+DG P+ + D +L ++ VGQEP LF NI+YG T+ ++I A +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 616 AYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673
+ AHDFI P GY+T V + + L+ GQ+Q +A+ARA++R P +LILD ATSALDA ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 674 HNIKGVLRAVRSDTMTRRTVLVIAHRL 700
++ +L S RTVL+I +L
Sbjct: 193 LRVQRLL--YESPEWASRTVLLITQQL 217
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 129/211 (61%), Gaps = 9/211 (4%)
Query: 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI 559
I F ++ FRY V +L ++N+S+ GEV+ I G SGSGKSTL L+ R Y P NGQ+
Sbjct: 2 ITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 560 LIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAH 619
LIDG + D WLR ++G V Q+ L I NIS + + + +AAK A AH
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGAH 119
Query: 620 DFIMSLPSGYETLVDDD--LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIK 677
DFI L GY T+V + LSGGQ+QRIAIARA++ +P ILI DEATSALD ESEH I
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 678 GVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708
+ + RTV++IAHRL ST + D
Sbjct: 180 RNMHKI----CKGRTVIIIAHRL-STVKNAD 205
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 129/211 (61%), Gaps = 9/211 (4%)
Query: 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI 559
I F ++ FRY V +L ++N+S+ GEV+ I G SGSGKSTL L+ R Y P NGQ+
Sbjct: 8 ITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 560 LIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAH 619
LIDG + D WLR ++G V Q+ L I NIS + + + +AAK A AH
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGAH 125
Query: 620 DFIMSLPSGYETLVDDD--LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIK 677
DFI L GY T+V + LSGGQ+QRIAIARA++ +P ILI DEATSALD ESEH I
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 678 GVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708
+ + RTV++IAHRL ST + D
Sbjct: 186 RNMHKI----CKGRTVIIIAHRL-STVKNAD 211
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 129/211 (61%), Gaps = 9/211 (4%)
Query: 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI 559
I F ++ FRY V +L ++N+S+ GEV+ I G SGSGKSTL L+ R Y P NGQ+
Sbjct: 4 ITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 62
Query: 560 LIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAH 619
LIDG + D WLR ++G V Q+ L I NIS + + + +AAK A AH
Sbjct: 63 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGAH 121
Query: 620 DFIMSLPSGYETLVDDD--LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIK 677
DFI L GY T+V + LSGGQ+QRIAIARA++ +P ILI DEATSALD ESEH I
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 678 GVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708
+ + RTV++IAHRL ST + D
Sbjct: 182 RNMHKI----CKGRTVIIIAHRL-STVKNAD 207
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 129/211 (61%), Gaps = 9/211 (4%)
Query: 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI 559
I F ++ FRY V +L ++N+S+ GEV+ I G +GSGKSTL L+ R Y P NGQ+
Sbjct: 4 ITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQV 62
Query: 560 LIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAH 619
LIDG + D WLR ++G V Q+ L I NIS + + + +AAK A AH
Sbjct: 63 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGAH 121
Query: 620 DFIMSLPSGYETLVDDD--LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIK 677
DFI L GY T+V + LSGGQ+QRIAIARA++ +P ILI DEATSALD ESEH I
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 678 GVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708
+ + RTV++IAHRL ST + D
Sbjct: 182 RNMHKI----CKGRTVIIIAHRL-STVKNAD 207
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 129/211 (61%), Gaps = 9/211 (4%)
Query: 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI 559
I F ++ FRY V +L ++N+S+ GEV+ I G SGSGKSTL L+ R Y P NGQ+
Sbjct: 8 ITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 560 LIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAH 619
LIDG + D WLR ++G V Q+ L I NIS + + + +AAK A AH
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGAH 125
Query: 620 DFIMSLPSGYETLVDDD--LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIK 677
DFI L GY T+V + LSGGQ+QRIAIARA++ +P ILI D+ATSALD ESEH I
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 678 GVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708
+ + RTV++IAHRL ST + D
Sbjct: 186 RNMHKI----CKGRTVIIIAHRL-STVKNAD 211
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 128/211 (60%), Gaps = 9/211 (4%)
Query: 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI 559
I F ++ FRY V +L ++N+S+ GEV+ I G SGSGKSTL L+ R Y P NGQ+
Sbjct: 2 ITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 560 LIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAH 619
LIDG + D WLR ++G V Q+ L I NIS + + + +AAK A AH
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGAH 119
Query: 620 DFIMSLPSGYETLVDDD--LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIK 677
DFI L GY T+V + LSGGQ+QRIAIARA++ +P ILI DEATSALD ESEH I
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 678 GVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708
+ + RTV++IA RL ST + D
Sbjct: 180 RNMHKI----CKGRTVIIIAARL-STVKNAD 205
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 128/211 (60%), Gaps = 9/211 (4%)
Query: 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI 559
I F ++ FRY V +L ++N+S+ GEV+ I G SGSGKSTL L+ R Y P NGQ+
Sbjct: 8 ITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 560 LIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAH 619
LIDG + D WLR ++G V Q+ L I NIS + + + +AAK A AH
Sbjct: 67 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL-ANPGMSVEKVIYAAKLAGAH 125
Query: 620 DFIMSLPSGYETLVDDD--LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIK 677
DFI L GY T+V + LSGGQ+QRIAIARA++ +P ILI DEATSALD ESEH I
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 678 GVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708
+ + RTV++IA RL ST + D
Sbjct: 186 RNMHKI----CKGRTVIIIAARL-STVKNAD 211
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 142/240 (59%), Gaps = 12/240 (5%)
Query: 472 EKVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSFRYS-SREMVPVLQHVNISVNPGEV 530
E +F L+ + + L+ GRI+F +V F Y+ RE LQ V+ +V PG+
Sbjct: 26 ENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRE---TLQDVSFTVMPGQT 82
Query: 531 VAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRM 590
+A+ G SG+GKST++ LL R Y+ ++G I IDG I +V LR IG V Q+ LF
Sbjct: 83 LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142
Query: 591 DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD--LLSGGQKQRIAI 648
I+ NI YG ++E AA+ A HD IM+ P GY T V + LSGG+KQR+AI
Sbjct: 143 TIADNIRYGRVT-AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAI 201
Query: 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708
AR IL+ P I++LDEATSALD +E I+ L V ++ RT +V+AHRL ST ++ D
Sbjct: 202 ARTILKAPGIILLDEATSALDTSNERAIQASLAKVCAN----RTTIVVAHRL-STVVNAD 256
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 120/198 (60%), Gaps = 8/198 (4%)
Query: 505 VSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF 564
V F Y E + L+ ++ P ++A AG SG GKST+ +LL R Y+PT G+I IDG
Sbjct: 7 VDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64
Query: 565 PIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMS 624
PI + ++ R +IGFV Q+ + I N++YG D +D+ A+A F+ +
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 625 LPSGYETLVDDD--LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRA 682
+P T V + +SGGQ+QR+AIARA LR+P IL+LDEAT++LD+ESE ++ L +
Sbjct: 125 MPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184
Query: 683 VRSDTMTRRTVLVIAHRL 700
+ M RT LVIAHRL
Sbjct: 185 L----MKGRTTLVIAHRL 198
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 126/211 (59%), Gaps = 10/211 (4%)
Query: 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI 559
I+F DV+F Y + L+ +N + G A+ G +GSGKST+ LL R Y+ G I
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDI 76
Query: 560 LIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAH 619
I G + + + +R IG V Q+ LF I NI YG D +++ A K A +
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYG-KLDATDEEVIKATKSAQLY 135
Query: 620 DFIMSLPSGYETLVDDD--LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIK 677
DFI +LP ++T+V + LSGG++QRIAIAR +L+DP I+I DEATS+LD+++E+ +
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 678 GVLRAVRSDTMTRRTVLVIAHRL--ISTALS 706
+ +R + RT+++IAHRL IS+A S
Sbjct: 196 KAVEDLRKN----RTLIIIAHRLSTISSAES 222
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 13/206 (6%)
Query: 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI 559
+ +DV S + VL+ +N+ + GEVV + G SGSGKST + L L + G+I
Sbjct: 1 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 60
Query: 560 LIDGFPIKEVD--IKWLRGRIGFVGQEPKLF-RMDISSNISYGCTQDIKQQDIEWAAKQA 616
+IDG +K D + +R +G V Q LF M + +NI+ + K W ++A
Sbjct: 61 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRK-----WPREKA 115
Query: 617 YAHDFIMSLPSGYETLVD--DDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEH 674
A + G + D LSGGQ QR+AIARA+ +P I++ DE TSALD E
Sbjct: 116 EAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 175
Query: 675 NIKGVLRAVRSDTMTRRTVLVIAHRL 700
+ V++ + ++ M T++V+ H +
Sbjct: 176 EVLSVMKQLANEGM---TMVVVTHEM 198
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 108/206 (52%), Gaps = 13/206 (6%)
Query: 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI 559
+ +DV S + VL+ +N+ + GEVV + G SGSGKST + L L + G+I
Sbjct: 22 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 560 LIDGFPIKEVD--IKWLRGRIGFVGQEPKLF-RMDISSNISYGCTQDIKQQDIEWAAKQA 616
+IDG +K D + +R +G V Q LF M + +NI+ + K W ++A
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRK-----WPREKA 136
Query: 617 YAHDFIMSLPSGYETLVD--DDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEH 674
A + G + D LSGGQ QR+AIARA+ +P I++ DE TSALD E
Sbjct: 137 EAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 196
Query: 675 NIKGVLRAVRSDTMTRRTVLVIAHRL 700
+ V++ + ++ M T++V+ H +
Sbjct: 197 EVLSVMKQLANEGM---TMVVVTHEM 219
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 62/200 (31%), Positives = 106/200 (53%), Gaps = 25/200 (12%)
Query: 513 EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-- 570
E++ L++VN+++ GE V+I G SGSGKST +N++ L +PT G++ ID ++D
Sbjct: 16 EIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDD 75
Query: 571 --IKWLRGRIGFVGQEPKLFRMDIS-SNISY---------GCTQDIKQQDIEWAAKQAYA 618
K R +IGFV Q+ L + + N+ ++ +++ +E
Sbjct: 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELE 135
Query: 619 HDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKG 678
F P + LSGGQ+QR+AIARA+ +P I++ DE T ALD+++ I
Sbjct: 136 ERFANHKP---------NQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQ 186
Query: 679 VLRAVRSDTMTRRTVLVIAH 698
+L+ + + +TV+V+ H
Sbjct: 187 LLKKLNEE--DGKTVVVVTH 204
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 110/204 (53%), Gaps = 9/204 (4%)
Query: 497 MGRIDFVDVS--FRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP 554
MGRI+ V+VS F + L++V++ +N GE + +AG +GSGKSTL+ ++ L EP
Sbjct: 2 MGRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 61
Query: 555 TNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAK 614
T+G +L DG K +I+ G I F E + F + +++ +D K
Sbjct: 62 TSGDVLYDGERKKGYEIRRNIG-IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 120
Query: 615 QAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEH 674
+A +F+ ++ V LSGG+K+R+AIA I+ +P ILILDE LD E +
Sbjct: 121 KAM--EFVGLDFDSFKDRV-PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKT 177
Query: 675 NIKGVLRAVRSDTMTRRTVLVIAH 698
++ LR V +TV++I+H
Sbjct: 178 DL---LRIVEKWKTLGKTVILISH 198
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 61/200 (30%), Positives = 107/200 (53%), Gaps = 25/200 (12%)
Query: 513 EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-- 570
E++ L++VN+++ GE V+I G SGSGKST++N++ L +PT G++ ID ++D
Sbjct: 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDD 75
Query: 571 --IKWLRGRIGFVGQEPKLFRMDIS-SNISYGCT---------QDIKQQDIEWAAKQAYA 618
K R +IGFV Q+ L + + N+ ++ +++ +E
Sbjct: 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE 135
Query: 619 HDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKG 678
F P + LSGGQ+QR+AIARA+ +P I++ D+ T ALD+++ I
Sbjct: 136 ERFANHKP---------NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQ 186
Query: 679 VLRAVRSDTMTRRTVLVIAH 698
+L+ + + +TV+V+ H
Sbjct: 187 LLKKLNEE--DGKTVVVVTH 204
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 89.7 bits (221), Expect = 5e-18, Method: Composition-based stats.
Identities = 61/200 (30%), Positives = 107/200 (53%), Gaps = 25/200 (12%)
Query: 513 EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-- 570
E++ L++VN+++ GE V+I G SGSGKST++N++ L +PT G++ ID ++D
Sbjct: 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDD 75
Query: 571 --IKWLRGRIGFVGQEPKLFRMDIS-SNISYGCT---------QDIKQQDIEWAAKQAYA 618
K R +IGFV Q+ L + + N+ ++ +++ +E
Sbjct: 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE 135
Query: 619 HDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKG 678
F P + LSGGQ+QR+AIARA+ +P I++ D+ T ALD+++ I
Sbjct: 136 ERFANHKP---------NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ 186
Query: 679 VLRAVRSDTMTRRTVLVIAH 698
+L+ + + +TV+V+ H
Sbjct: 187 LLKKLNEE--DGKTVVVVTH 204
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 108/202 (53%), Gaps = 9/202 (4%)
Query: 499 RIDFVDVS--FRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN 556
RI+ V+VS F + L++V++ +N GE + +AG +GSGKSTL+ ++ L EPT+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 557 GQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQA 616
G +L DG K +I+ G I F E + F + +++ +D K+A
Sbjct: 62 GDVLYDGERKKGYEIRRNIG-IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKA 120
Query: 617 YAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNI 676
+F+ ++ V LSGG+K+R+AIA I+ +P ILILDE LD E + ++
Sbjct: 121 M--EFVGLDFDSFKDRV-PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDL 177
Query: 677 KGVLRAVRSDTMTRRTVLVIAH 698
LR V +TV++I+H
Sbjct: 178 ---LRIVEKWKTLGKTVILISH 196
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 17/210 (8%)
Query: 507 FRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG--- 563
F +R + L +V++ V G++ + G SG+GKSTL+ + L PT G +L+DG
Sbjct: 11 FHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQEL 69
Query: 564 FPIKEVDIKWLRGRIGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFI 622
+ E ++ R +IG + Q L + N++ D +D ++ +
Sbjct: 70 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD--EVKRRVTELLSL 127
Query: 623 MSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRA 682
+ L +++ + LSGGQKQR+AIARA+ +P +L+ DEATSALD + +I +L+
Sbjct: 128 VGLGDKHDSYPSN--LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD 185
Query: 683 VRSDTMTRR---TVLVIAHRLISTALSFDC 709
+ RR T+L+I H + DC
Sbjct: 186 I-----NRRLGLTILLITHEMDVVKRICDC 210
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 108/222 (48%), Gaps = 41/222 (18%)
Query: 507 FRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG--- 563
F +R + L +V++ V G++ + G SG+GKSTL+ + L PT G +L+DG
Sbjct: 34 FHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQEL 92
Query: 564 FPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCT-----------QDIKQQDIEWA 612
+ E ++ R +IG + Q L +SS +G ++K++ E
Sbjct: 93 TTLSESELTKARRQIGMIFQHFNL----LSSRTVFGNVALPLELDNTPKDEVKRRVTELL 148
Query: 613 AKQAYA--HDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDA 670
+ HD S PS LSGGQKQR+AIARA+ +P +L+ D+ATSALD
Sbjct: 149 SLVGLGDKHD---SYPSN---------LSGGQKQRVAIARALASNPKVLLCDQATSALDP 196
Query: 671 ESEHNIKGVLRAVRSDTMTRR---TVLVIAHRLISTALSFDC 709
+ +I +L+ + RR T+L+I H + DC
Sbjct: 197 ATTRSILELLKDI-----NRRLGLTILLITHEMDVVKRICDC 233
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 14/171 (8%)
Query: 506 SFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFP 565
Y+ + L+ +N+++ GEV AI G +G GKSTL + +P++G+IL D P
Sbjct: 12 ELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP 71
Query: 566 IK--EVDIKWLRGRIGFVGQEP--KLFRMDISSNISYGCTQ-DIKQQDIEWAAKQAYAHD 620
I I LR IG V Q+P +LF + ++S+G + + +I A
Sbjct: 72 IDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKR- 130
Query: 621 FIMSLPSGYETLVDDDL--LSGGQKQRIAIARAILRDPTILILDEATSALD 669
+G E L D LS GQK+R+AIA ++ +P +LILDE T+ LD
Sbjct: 131 ------TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 89/155 (57%), Gaps = 9/155 (5%)
Query: 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577
L ++N+ + GE +A+ G SGSGKSTL+ + +Y+PT+G+I D + E+ K
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76
Query: 578 IGFVGQEPKLF-RMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD 635
+G V Q L+ M + NI++ + +++I+ ++ I L + Y
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ--- 133
Query: 636 DLLSGGQKQRIAIARAILRDPTILILDEATSALDA 670
LSGGQ+QR+AIARA++++P +L+LDE S LDA
Sbjct: 134 --LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 99/184 (53%), Gaps = 16/184 (8%)
Query: 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577
L ++++ V GE I G +G+GK+ + L+ + P +G+IL+DG + D+ +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV--TDLSPEKHD 73
Query: 578 IGFVGQEPKLF-RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD 636
I FV Q LF M++ N+ +G K +D + A D + E L+D +
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK-KIKDPKRVLDTA--RDLKI------EHLLDRN 124
Query: 637 --LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVL 694
LSGG++QR+A+ARA++ +P IL+LDE SALD ++ N + +L + + TVL
Sbjct: 125 PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK--NKLTVL 182
Query: 695 VIAH 698
I H
Sbjct: 183 HITH 186
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 103/205 (50%), Gaps = 18/205 (8%)
Query: 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQ 558
RI+ VSFRY+ VL+ VN G++ + G +GSGK+TL+ +L L G+
Sbjct: 11 RIELNSVSFRYNGDY---VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA-GE 66
Query: 559 ILIDGFPIKEVDIKWLRGRIGFVGQEP--KLFRMDISSNISYGCT-QDIKQQDIEWAAKQ 615
I +DG P D LR +G+V Q P ++ + ++++ + + ++ K+
Sbjct: 67 IFLDGSP---ADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKK 123
Query: 616 AYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHN 675
+ L + D LSGGQKQR+AIA + RD L LDE S LD S+
Sbjct: 124 VLELVGLSGLAA-----ADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQRE 178
Query: 676 IKGVLRAVRSDTMTRRTVLVIAHRL 700
I VL +++++ + ++++ H L
Sbjct: 179 IFQVLESLKNEG---KGIILVTHEL 200
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 17/210 (8%)
Query: 507 FRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG--- 563
F +R + L +V++ V G++ + G SG+GKSTL+ + L PT G +L+DG
Sbjct: 34 FHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQEL 92
Query: 564 FPIKEVDIKWLRGRIGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFI 622
+ E ++ R +IG + Q L + N++ D +D ++ +
Sbjct: 93 TTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKD--EVKRRVTELLSL 150
Query: 623 MSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRA 682
+ L +++ + LSGGQKQR+AIARA+ +P +L+ D+ATSALD + +I +L+
Sbjct: 151 VGLGDKHDSYPSN--LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Query: 683 VRSDTMTRR---TVLVIAHRLISTALSFDC 709
+ RR T+L+I H DC
Sbjct: 209 I-----NRRLGLTILLITHEXDVVKRICDC 233
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 21/168 (12%)
Query: 521 VNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580
V+ V GE VA+ G SG GK+T + +L +Y+PT+G+I D + ++ K+ +G
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYR--EVGM 79
Query: 581 VGQEPKLF-RMDISSNISYG-----CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVD 634
V Q L+ M + NI++ ++D ++ + A++ + + P+
Sbjct: 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQ------ 133
Query: 635 DDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRA 682
LSGGQ+QR+A+ARA+++ P +L+ DE S LDA N++ ++RA
Sbjct: 134 ---LSGGQQQRVALARALVKQPKVLLFDEPLSNLDA----NLRMIMRA 174
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 25/177 (14%)
Query: 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD------ 570
+L+ +++SV GE V+I G SGSGKSTL+ +L L PT G++ ++G KEVD
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEG---KEVDYTNEKE 75
Query: 571 IKWLRGR-IGFVGQE----PKLFRMD--ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIM 623
+ LR R +GFV Q P+L ++ I + G + ++ E+ + D +
Sbjct: 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS 135
Query: 624 SLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVL 680
P YE LSGG++QR+AIARA+ +P +L DE T LD+ + + +
Sbjct: 136 RKP--YE-------LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIF 183
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 28/206 (13%)
Query: 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI 559
I+FV V Y ++ V+ + GE+V + G SGSGK+T++ L+ L PT G +
Sbjct: 15 IEFVGVEKIYPGGARS--VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 560 LIDGFPIKEVDIKWLRGRIGFVGQEPKLFR-MDISSNISYGCTQDIKQQD---------I 609
I G + D+ + +G V Q LF+ M + N+S+G + +D +
Sbjct: 73 WIGGKRV--TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 610 EWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALD 669
+ ++YA+ F L SGGQ+QR+A+ARA+ P +L+ DE +A+D
Sbjct: 131 RFMRLESYANRFPHEL-------------SGGQQQRVALARALAPRPQVLLFDEPFAAID 177
Query: 670 AESEHNIKGVLRAVRSDTMTRRTVLV 695
+ ++ +R V D M +V V
Sbjct: 178 TQIRRELRTFVRQV-HDEMGVTSVFV 202
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 113/212 (53%), Gaps = 23/212 (10%)
Query: 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN 556
M RI +VS + ++V L +VNI++ GE I G SG+GK+T + ++ L P+
Sbjct: 1 MVRIIVKNVSKVFKKGKVV-ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 557 GQILIDGFPIK---EVDIKWLRGRIGFVGQEPKLF-RMDISSNISYGCT------QDIKQ 606
G++ D + ++ + +IG V Q L+ + NI++ T ++I++
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 607 QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATS 666
+ +E AK H + P LSGGQ+QR+A+ARA+++DP++L+LDE S
Sbjct: 120 R-VEEVAKILDIHHVLNHFPRE---------LSGGQQQRVALARALVKDPSLLLLDEPFS 169
Query: 667 ALDAESEHNIKGVLRAVRSDTMTRRTVLVIAH 698
LDA + + +++ V+S T+LV++H
Sbjct: 170 NLDARMRDSARALVKEVQSRLGV--TLLVVSH 199
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 6/191 (3%)
Query: 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG 557
G++ D++ +Y+ +L++++ S++PG+ V + G +GSGKSTL++ LRL T G
Sbjct: 18 GQMTVKDLTAKYTEGGNA-ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 75
Query: 558 QILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAY 617
+I IDG + ++ R G + Q+ +F N+ Q+I A +
Sbjct: 76 EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH--SDQEIWKVADEVG 133
Query: 618 AHDFIMSLPSGYE-TLVDDD-LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHN 675
I P + LVD +LS G KQ + +AR++L IL+LDE ++ LD +
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 676 IKGVLRAVRSD 686
I+ L+ +D
Sbjct: 194 IRRTLKQAFAD 204
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 112/212 (52%), Gaps = 23/212 (10%)
Query: 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN 556
M RI +VS + ++V L +VNI++ GE I G SG+GK+T + ++ L P+
Sbjct: 1 MVRIIVKNVSKVFKKGKVV-ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 557 GQILIDGFPIK---EVDIKWLRGRIGFVGQEPKLF-RMDISSNISYGCT------QDIKQ 606
G++ D + ++ + +IG V Q L+ + NI++ T ++I++
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 607 QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATS 666
+ +E AK H + P LSG Q+QR+A+ARA+++DP++L+LDE S
Sbjct: 120 R-VEEVAKILDIHHVLNHFPRE---------LSGAQQQRVALARALVKDPSLLLLDEPFS 169
Query: 667 ALDAESEHNIKGVLRAVRSDTMTRRTVLVIAH 698
LDA + + +++ V+S T+LV++H
Sbjct: 170 NLDARMRDSARALVKEVQSRLGV--TLLVVSH 199
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 23/163 (14%)
Query: 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577
+ +N+++ GE + + G SG GK+T + ++ L EPT G+I + D+ +L +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG-----DRDVTYLPPK 82
Query: 578 ---IGFVGQEPKLF-RMDISSNISYGC-----TQDIKQQDIEWAAKQAYAHDFIMSLPSG 628
I V Q ++ M + NI++ +D + + WAA+ + + P+
Sbjct: 83 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ 142
Query: 629 YETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAE 671
LSGGQ+QR+A+ARAI+ +P +L++DE S LDA+
Sbjct: 143 ---------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 176
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 23/163 (14%)
Query: 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577
+ +N+++ GE + + G SG GK+T + ++ L EPT G+I + D+ +L +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG-----DRDVTYLPPK 81
Query: 578 ---IGFVGQEPKLF-RMDISSNISYGC-----TQDIKQQDIEWAAKQAYAHDFIMSLPSG 628
I V Q ++ M + NI++ +D + + WAA+ + + P+
Sbjct: 82 DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ 141
Query: 629 YETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAE 671
LSGGQ+QR+A+ARAI+ +P +L++DE S LDA+
Sbjct: 142 ---------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 175
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 30/193 (15%)
Query: 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL 574
PVL+ +N + G+++A+AG +G+GK++L+ +++ EP+ G+I
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KH 67
Query: 575 RGRIGFVGQEPKLFRMDISSNISYGCTQD-------IKQQDIEWAAKQAYAHDFIMSLPS 627
GRI F Q + I NI +G + D IK +E + D I+
Sbjct: 68 SGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 127
Query: 628 GYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDT 687
G LSGGQ+ RI++ARA+ +D + +LD LD +E K + +
Sbjct: 128 GI-------TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE---KEIFESCVCKL 177
Query: 688 MTRRTVLVIAHRL 700
M +T +++ ++
Sbjct: 178 MANKTRILVTSKM 190
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 98/196 (50%), Gaps = 33/196 (16%)
Query: 504 DVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG 563
++ F Y + + Q +N +N G+++A+ G +G GKSTL++LLL ++ P G+I +
Sbjct: 9 NLGFYYQAENFL--FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-- 64
Query: 564 FPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDI---KQQDIEWAAKQAYAHD 620
IGFV P+ F SS +Y + + I AK +HD
Sbjct: 65 -----------YQSIGFV---PQFF----SSPFAYSVLDIVLMGRSTHINTFAKPK-SHD 105
Query: 621 FIMSLPS-GYETLV-----DDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEH 674
+ +++ + Y L + LSGGQ+Q I IARAI + +++LDE TSALD ++
Sbjct: 106 YQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQD 165
Query: 675 NIKGVL-RAVRSDTMT 689
+ +L +S MT
Sbjct: 166 IVLSLLIDLAQSQNMT 181
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 30/193 (15%)
Query: 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL 574
PVL+ +N + G+++A+AG +G+GK++L+ +++ EP+ G+I
Sbjct: 33 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KH 79
Query: 575 RGRIGFVGQEPKLFRMDISSNISYGCTQD-------IKQQDIEWAAKQAYAHDFIMSLPS 627
GRI F Q + I NI +G + D IK +E + D I+
Sbjct: 80 SGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 139
Query: 628 GYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDT 687
G LSGGQ+ RI++ARA+ +D + +LD LD +E K + +
Sbjct: 140 GI-------TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE---KEIFESCVCKL 189
Query: 688 MTRRTVLVIAHRL 700
M +T +++ ++
Sbjct: 190 MANKTRILVTSKM 202
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 38/211 (18%)
Query: 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQIL 560
D +VSF + PVL+++N+++ GE++AI G +GSGK++L+ L+L E + G
Sbjct: 37 DENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG--- 93
Query: 561 IDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQD-------IK----QQDI 609
I GR+ F Q + I NI +G + D +K QQDI
Sbjct: 94 ----------IIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDI 143
Query: 610 EWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALD 669
A+Q L G T LSGGQ+ RI++ARA+ +D + +LD LD
Sbjct: 144 TKFAEQDNT-----VLGEGGVT------LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
Query: 670 AESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700
+E V + M +T +++ ++
Sbjct: 193 VFTEEQ---VFESCVCKLMANKTRILVTSKM 220
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 38/211 (18%)
Query: 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQIL 560
D +VSF + PVL+++N+++ GE++AI G +GSGK++L+ L+L E + G
Sbjct: 37 DENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG--- 93
Query: 561 IDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQD-------IK----QQDI 609
I GR+ F Q + I NI +G + D +K QQDI
Sbjct: 94 ----------IIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDI 143
Query: 610 EWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALD 669
A+Q L G T LSGGQ+ RI++ARA+ +D + +LD LD
Sbjct: 144 TKFAEQDNT-----VLGEGGVT------LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
Query: 670 AESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700
+E V + M +T +++ ++
Sbjct: 193 VFTEEQ---VFESCVCKLMANKTRILVTSKM 220
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 30/193 (15%)
Query: 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL 574
PVL+ +N + G+++A+AG +G+GK++L+ +++ EP+ G+I
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KH 97
Query: 575 RGRIGFVGQEPKLFRMDISSNISYGCTQD-------IKQQDIEWAAKQAYAHDFIMSLPS 627
GRI F Q + I NI G + D IK +E + D I+
Sbjct: 98 SGRISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 628 GYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDT 687
G LSGGQ+ RI++ARA+ +D + +LD LD +E K + +
Sbjct: 158 GI-------TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE---KEIFESCVCKL 207
Query: 688 MTRRTVLVIAHRL 700
M +T +++ ++
Sbjct: 208 MANKTRILVTSKM 220
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 38/211 (18%)
Query: 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQIL 560
D +VSF + PVL+++N+++ GE++AI G +GSGK++L+ L+L E + G
Sbjct: 37 DENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG--- 93
Query: 561 IDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQD-------IK----QQDI 609
I GR+ F Q + I NI G + D +K QQDI
Sbjct: 94 ----------IIKHSGRVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDI 143
Query: 610 EWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALD 669
A+Q L G T LSGGQ+ RI++ARA+ +D + +LD LD
Sbjct: 144 TKFAEQDNT-----VLGEGGVT------LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
Query: 670 AESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700
+E V + M +T +++ ++
Sbjct: 193 VFTEEQ---VFESCVCKLMANKTRILVTSKM 220
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 38/211 (18%)
Query: 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQIL 560
D +VSF + PVL+++N+++ GE++AI G +GSGK++L+ L+L E + G
Sbjct: 37 DENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG--- 93
Query: 561 IDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQD-------IK----QQDI 609
I GR+ F Q + I NI G + D +K QQDI
Sbjct: 94 ----------IIKHSGRVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDI 143
Query: 610 EWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALD 669
A+Q L G T LSGGQ+ RI++ARA+ +D + +LD LD
Sbjct: 144 TKFAEQDNT-----VLGEGGVT------LSGGQRARISLARAVYKDADLYLLDSPFGYLD 192
Query: 670 AESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700
+E V + M +T +++ ++
Sbjct: 193 VFTEEQ---VFESCVCKLMANKTRILVTSKM 220
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 15/177 (8%)
Query: 535 GLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLF-RMDIS 593
G +G+GKS + L+ + +P G++ ++G I + + RG IGFV Q+ LF + +
Sbjct: 31 GPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER-RG-IGFVPQDYALFPHLSVY 88
Query: 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD--LLSGGQKQRIAIARA 651
NI+YG + M+ G L+D LSGG++QR+A+ARA
Sbjct: 89 RNIAYGLRN--------VERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARA 140
Query: 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708
++ P +L+LDE SA+D +++ + LR V+ + +L + H LI A+ D
Sbjct: 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV--PILHVTHDLIEAAMLAD 195
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 36/223 (16%)
Query: 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQ 558
++ +D+ RY E VL+ V++ G+V++I G SGSGKST + + L +P+ G
Sbjct: 6 KLHVIDLHKRYGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 62
Query: 559 ILIDGFPIKEV-------------DIKWLRGRIGFVGQEPKLF-RMDISSNISYGCTQ-- 602
I+++G I V ++ LR R+ V Q L+ M + N+ Q
Sbjct: 63 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 122
Query: 603 -----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657
D +++ +++ AK P LSGGQ+QR++IARA+ +P
Sbjct: 123 GLSKHDARERALKYLAKVGIDERAQGKYPVH---------LSGGQQQRVSIARALAMEPD 173
Query: 658 ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700
+L+ DE TSALD E + VLR ++ +T++V+ H +
Sbjct: 174 VLLFDEPTSALDPEL---VGEVLRIMQQLAEEGKTMVVVTHEM 213
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 31/193 (16%)
Query: 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL 574
PVL+ +N + G+++A+AG +G+GK++L+ +++ EP+ G+I
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KH 97
Query: 575 RGRIGFVGQEPKLFRMDISSNISYGCTQD-------IKQQDIEWAAKQAYAHDFIMSLPS 627
GRI F Q + I NI G + D IK +E + D I+
Sbjct: 98 SGRISFCSQNSWIMPGTIKENI-IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 628 GYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDT 687
G LSGGQ+ RI++ARA+ +D + +LD LD +E K + +
Sbjct: 157 GI-------TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE---KEIFESCVCKL 206
Query: 688 MTRRTVLVIAHRL 700
M +T +++ ++
Sbjct: 207 MANKTRILVTSKM 219
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 31/193 (16%)
Query: 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL 574
PVL+ +N + G+++A+AG +G+GK++L+ +++ EP+ G+I
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KH 97
Query: 575 RGRIGFVGQEPKLFRMDISSNISYGCTQD-------IKQQDIEWAAKQAYAHDFIMSLPS 627
GRI F Q + I NI G + D IK +E + D I+
Sbjct: 98 SGRISFCSQNSWIMPGTIKENI-IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 628 GYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDT 687
G LSGGQ+ RI++ARA+ +D + +LD LD +E K + +
Sbjct: 157 GI-------TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE---KEIFESCVCKL 206
Query: 688 MTRRTVLVIAHRL 700
M +T +++ ++
Sbjct: 207 MANKTRILVTSKM 219
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 25/209 (11%)
Query: 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN 556
M I + +F ++ R P L + S+ G +VA+ G G GKS+L++ LL +
Sbjct: 1 MNSITVRNATFTWA-RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE 59
Query: 557 GQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQA 616
G + I +G + +V Q+ + + NI +GC ++ + QA
Sbjct: 60 GHVAI-------------KGSVAYVPQQAWIQNDSLRENILFGCQL---EEPYYRSVIQA 103
Query: 617 YA--HDFIMSLPSGYETLVDDDL--LSGGQKQRIAIARAILRDPTILILDEATSALDAE- 671
A D + LPSG T + + LSGGQKQR+++ARA+ + I + D+ SA+DA
Sbjct: 104 CALLPDLEI-LPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 162
Query: 672 SEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700
+H + V+ + +T +++ H +
Sbjct: 163 GKHIFENVIGP--KGMLKNKTRILVTHSM 189
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 17/171 (9%)
Query: 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI--KEVDIK 572
PVL +++S++PGE++ I G SG GK+TL+ L +P +G+I + G I K ++
Sbjct: 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLP 76
Query: 573 WLRGRIGFVGQEPKLF-RMDISSNISYGCTQDI-----KQQDIEWAAKQAYAHDFIMSLP 626
R+G++ QE LF + + NI+YG ++Q IE + + P
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP 136
Query: 627 SGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIK 677
+E LSGGQ+QR A+ARA+ DP +++LDE SALD + I+
Sbjct: 137 --HE-------LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIR 178
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 17/162 (10%)
Query: 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL 574
V V + +N+ ++ GE V G SG GKSTL+ ++ L T+G + I + D
Sbjct: 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPPA 73
Query: 575 RGRIGFVGQEPKLF-RMDISSNISYG-----CTQDIKQQDIEWAAKQAYAHDFIMSLPSG 628
+G V Q L+ + ++ N+S+G +++ Q + A+ + P
Sbjct: 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA 133
Query: 629 YETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDA 670
LSGGQ+QR+AI R ++ +P++ +LDE S LDA
Sbjct: 134 ---------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 30/193 (15%)
Query: 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL 574
PVL+ +N + G+++A+AG +G+GK++L+ +++ EP+ G+I
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KH 97
Query: 575 RGRIGFVGQEPKLFRMDISSNISYGCTQD-------IKQQDIEWAAKQAYAHDFIMSLPS 627
GRI F Q + I NI +G + D IK +E + D I+
Sbjct: 98 SGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 157
Query: 628 GYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDT 687
G LS GQ+ +I++ARA+ +D + +LD LD +E K + +
Sbjct: 158 GI-------TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTE---KEIFESCVCKL 207
Query: 688 MTRRTVLVIAHRL 700
M +T +++ ++
Sbjct: 208 MANKTRILVTSKM 220
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 17/162 (10%)
Query: 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL 574
V V + +N+ ++ GE V G SG GKSTL+ ++ L T+G + I + D
Sbjct: 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPPA 73
Query: 575 RGRIGFVGQEPKLF-RMDISSNISYG-----CTQDIKQQDIEWAAKQAYAHDFIMSLPSG 628
+G V Q L+ + ++ N+S+G +++ Q + A+ + P
Sbjct: 74 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA 133
Query: 629 YETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDA 670
LSGGQ+QR+AI R ++ +P++ +LDE S LDA
Sbjct: 134 ---------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 89/180 (49%), Gaps = 19/180 (10%)
Query: 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILID----GFPIKEVD 570
V ++ +++ V GE + + G SG GK+T + ++ L EP+ GQI I P K +
Sbjct: 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIF 75
Query: 571 IKWLRGRIGFVGQEPKLF-RMDISSNISYGCT-QDIKQQDIEWAAKQAYA----HDFIMS 624
+ I V Q L+ M + NI++ + + +Q+I+ ++ + +
Sbjct: 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR 135
Query: 625 LPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVR 684
P LSGGQ+QR+A+ RAI+R P + ++DE S LDA+ ++ L+ ++
Sbjct: 136 KPRE---------LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 31/193 (16%)
Query: 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL 574
PVL+ +N + G+++A+AG +G+GK++L+ +++ EP+ G+I
Sbjct: 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KH 67
Query: 575 RGRIGFVGQEPKLFRMDISSNISYGCTQD-------IKQQDIEWAAKQAYAHDFIMSLPS 627
GRI F Q + I NI G + D IK +E + D I+
Sbjct: 68 SGRISFCSQFSWIMPGTIKENI-IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 126
Query: 628 GYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDT 687
G LSGGQ+ RI++ARA+ +D + +LD LD +E K + +
Sbjct: 127 GI-------TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE---KEIFESCVCKL 176
Query: 688 MTRRTVLVIAHRL 700
M +T +++ ++
Sbjct: 177 MANKTRILVTSKM 189
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 37/210 (17%)
Query: 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQIL 560
D +VSF + PVL+++N+++ GE++AI G +GSGK++L+ L+L E + G
Sbjct: 37 DENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG--- 93
Query: 561 IDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNI------SYGCTQDIK----QQDIE 610
I GR+ F Q + I NI Y +K QQDI
Sbjct: 94 ----------IIKHSGRVSFCSQFSWIMPGTIKENIIGVSYDEYRYKSVVKACQLQQDIT 143
Query: 611 WAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDA 670
A+Q L G T LSGGQ+ RI++ARA+ +D + +LD LD
Sbjct: 144 KFAEQDNT-----VLGEGGVT------LSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
Query: 671 ESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700
+E V + M +T +++ ++
Sbjct: 193 FTEEQ---VFESCVCKLMANKTRILVTSKM 219
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 17/162 (10%)
Query: 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL 574
V V + +N+ ++ GE V G SG GKSTL+ ++ L T+G + I + +
Sbjct: 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE- 74
Query: 575 RGRIGFVGQEPKLF-RMDISSNISYG-----CTQDIKQQDIEWAAKQAYAHDFIMSLPSG 628
RG +G V Q L+ + ++ N+S+G +++ Q + A+ + P
Sbjct: 75 RG-VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA 133
Query: 629 YETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDA 670
LSGGQ+QR+AI R ++ +P++ +LD+ S LDA
Sbjct: 134 ---------LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDA 166
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 27/222 (12%)
Query: 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI 559
+ ++ S + + ++ V++ + GE+VAI G +G+GKSTL+ LL P++G+
Sbjct: 9 VALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGEC 68
Query: 560 LIDGFPIKEVDIKWLRGRIGFVGQEPKL-FRMDISSNIS-----YGCTQDIKQQDIEWAA 613
+ G + K L + Q +L F +S I YG +QD + A
Sbjct: 69 HLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQ------AL 122
Query: 614 KQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR------DPTILILDEATSA 667
+Q A ++L D +LSGG++QR+ +AR + + P L LDE TSA
Sbjct: 123 QQVMAQTDCLALAQR-----DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSA 177
Query: 668 LDA-ESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708
LD +H ++ + + R + + V + H L AL D
Sbjct: 178 LDLYHQQHTLRLLRQLTRQEPL---AVCCVLHDLNLAALYAD 216
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQ 583
+ GEV+ I G +G GK+T V L + EPT G+I E D+ V
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKI--------EWDLT--------VAY 351
Query: 584 EPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDL--LSGG 641
+P+ + D + Y I D Y + + P G L D ++ LSGG
Sbjct: 352 KPQYIKADYEGTV-YELLSKI---DASKLNSNFYKTELLK--PLGIIDLYDREVNELSGG 405
Query: 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRS-DTMTRRTVLVIAHRL 700
+ QR+AIA +LRD I +LDE ++ LD E V RA+R +T LV+ H +
Sbjct: 406 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL---AVSRAIRHLXEKNEKTALVVEHDV 462
Query: 701 I 701
+
Sbjct: 463 L 463
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 638 LSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIA 697
LSGG+ QR+AIA A+LR+ T DE +S LD N RA+R + ++VLV+
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLN---AARAIRRLSEEGKSVLVVE 215
Query: 698 HRL 700
H L
Sbjct: 216 HDL 218
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILID----GFPIKEVD 570
V ++ +++ + GE + + G SG GK+T + + L EPT GQI I+ P K V
Sbjct: 19 VTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVF 78
Query: 571 IKWLRGRIGFVGQEPKLF-RMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSG 628
+ + V Q L+ + NI++ + + +Q+I+ ++ + L +
Sbjct: 79 VPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNR 138
Query: 629 YETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAE 671
LSGGQ+QR+A+ RAI+R P + + DE S LDA+
Sbjct: 139 KPRE-----LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 54/212 (25%), Positives = 98/212 (46%), Gaps = 41/212 (19%)
Query: 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQ 558
+++ D+S Y PVL+ + +++ G VV G +G GK+TL+ + +P G+
Sbjct: 10 KLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 559 ILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYA 618
I+ +G PI +V +G+I F+ +E + R I +D A Y
Sbjct: 66 IIYNGVPITKV-----KGKIFFLPEEIIVPR-------------KISVEDYLKAVASLYG 107
Query: 619 ----HDFIMSLPSGYETLVDDDL------LSGGQKQRIAIARAILRDPTILILDEATSAL 668
+ IM E L DL LS G +R+ +A +L + I +LD+ A+
Sbjct: 108 VKVNKNEIMDALESVEVL---DLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 164
Query: 669 DAESEHNI-KGVLRAVRSDTMTRRTVLVIAHR 699
D +S+H + K +L + + + +++I+ R
Sbjct: 165 DEDSKHKVLKSIL-----EILKEKGIVIISSR 191
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 26/180 (14%)
Query: 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQ 583
+ GEV+ I G +G GK+T V +L + EPT G++ E D+ V
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV--------EWDLT--------VAY 421
Query: 584 EPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDL--LSGG 641
+P+ + + + + + + D Y + + P G L D ++ LSGG
Sbjct: 422 KPQYIKAEYEGTV----YELLSKIDSSKLNSNFYKTELLK--PLGIIDLYDRNVEDLSGG 475
Query: 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701
+ QR+AIA +LRD I +LDE ++ LD E + +R + +T LV+ H ++
Sbjct: 476 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME--KNEKTALVVEHDVL 533
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 638 LSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIA 697
LSGG+ QR+AIA A+LR DE +S LD + V+R + ++ + VLV+
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEG---KAVLVVE 285
Query: 698 HRL 700
H L
Sbjct: 286 HDL 288
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 26/180 (14%)
Query: 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQ 583
+ GEV+ I G +G GK+T V +L + EPT G++ E D+ V
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV--------EWDLT--------VAY 407
Query: 584 EPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDL--LSGG 641
+P+ + + + + + + D Y + + P G L D ++ LSGG
Sbjct: 408 KPQYIKAEYEGTV----YELLSKIDSSKLNSNFYKTELLK--PLGIIDLYDRNVEDLSGG 461
Query: 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701
+ QR+AIA +LRD I +LDE ++ LD E + +R + +T LV+ H ++
Sbjct: 462 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME--KNEKTALVVEHDVL 519
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 638 LSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIA 697
LSGG+ QR+AIA A+LR DE +S LD + V+R + ++ + VLV+
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEG---KAVLVVE 271
Query: 698 HRL 700
H L
Sbjct: 272 HDL 274
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 107/220 (48%), Gaps = 26/220 (11%)
Query: 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN 556
MG + D+ R +E +L+ ++ + GE+ + G +G+GK+T + ++ L +P++
Sbjct: 13 MGAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS 69
Query: 557 GQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR-------MDISSNISYGCTQDIKQQDI 609
G + + G + E + +R I ++ +E +R + + + +I++ +
Sbjct: 70 GIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM-V 127
Query: 610 EWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALD 669
E A + A + I S Y S G +++ IARA++ +P + ILDE TS LD
Sbjct: 128 ERATEIAGLGEKIKDRVSTY---------SKGMVRKLLIARALMVNPRLAILDEPTSGLD 178
Query: 670 AESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFDC 709
+ ++ +L+ + + T+LV +H ++ + F C
Sbjct: 179 VLNAREVRKILKQASQEGL---TILVSSHNMLE--VEFLC 213
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 31/193 (16%)
Query: 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL 574
PVL+ +N + G+++A+AG +G+GK++L+ +++ EP+ G+I
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-------------KH 97
Query: 575 RGRIGFVGQEPKLFRMDISSNISYGCTQD-------IKQQDIEWAAKQAYAHDFIMSLPS 627
GRI F Q + I NI G + D IK +E + D I+
Sbjct: 98 SGRISFCSQFSWIMPGTIKENI-IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEG 156
Query: 628 GYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDT 687
G LS GQ+ +I++ARA+ +D + +LD LD +E K + +
Sbjct: 157 GI-------TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTE---KEIFESCVCKL 206
Query: 688 MTRRTVLVIAHRL 700
M +T +++ ++
Sbjct: 207 MANKTRILVTSKM 219
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 15/169 (8%)
Query: 521 VNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI--------DGFPIKEVDIK 572
+++ + V AI G S SGKST++ + + P NG+IL D ++E +++
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTL-PPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 573 WLR-GRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQ--AYAHDFIMSLPSGY 629
+R I V Q + ++ + + ++ + W+ + A + + +
Sbjct: 86 KIRWKEIALVPQAAQQ-SLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNP 144
Query: 630 ETLVDDDLL--SGGQKQRIAIARAILRDPTILILDEATSALDAESEHNI 676
E +++ L SGG KQR+ IA A+L DP +LILDE TSALD ++ +I
Sbjct: 145 EAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHI 193
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 33/172 (19%)
Query: 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-TNGQILIDGFPIKEV--DIKW 573
+L+ ++ + G+ + GL+G+GK+TL+N+L YEP T+G + + G +V +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNIL-NAYEPATSGTVNLFGKXPGKVGYSAET 94
Query: 574 LRGRIGFVG-------QE-PKLFRMDISSNI-SYGCTQDIK-------QQDIEWAAKQAY 617
+R IGFV QE ++ + IS S G QDI Q ++ A
Sbjct: 95 VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAK 154
Query: 618 AHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALD 669
A +I GY LS G+KQR+ IARA+ P +LILDE + LD
Sbjct: 155 AQQYI-----GY--------LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 18/196 (9%)
Query: 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI--KEVDIKWLR 575
L V+ISVN G+V I G +GSGKSTL+N++ + G++ + I KE +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 576 GRIGFVGQEPKLFRMDISSNISYG--CTQDIKQQDI---EWAAKQ------AYAHDFIMS 624
G + L M + N+ G C + + +W K+ A+ +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 625 LPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVR 684
L Y+ + LSGGQ + + I RA++ +P ++++DE + + H+I + ++
Sbjct: 143 LSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 685 SDTMTRRTVLVIAHRL 700
+ + T L+I HRL
Sbjct: 201 AKGI---TFLIIEHRL 213
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 22/138 (15%)
Query: 532 AIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMD 591
I G +G GKSTL+ + NGQ+ DGFP +E + + + G +D
Sbjct: 465 GICGPNGCGKSTLMRAI------ANGQV--DGFPTQE-ECRTVYVEHDIDGTHSDTSVLD 515
Query: 592 ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651
G + IK + IE+ D ++++P LSGG K ++A+ARA
Sbjct: 516 FVFESGVGTKEAIKDKLIEFGFT-----DEMIAMPIS--------ALSGGWKMKLALARA 562
Query: 652 ILRDPTILILDEATSALD 669
+LR+ IL+LDE T+ LD
Sbjct: 563 VLRNADILLLDEPTNHLD 580
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 482 PSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGK 541
P ++ K Q+ + ++ ++ + +S+ P + +N + +A+ G +G+GK
Sbjct: 656 PEPGYLEGVKTKQKAIVKVTNMEFQYPGTSK---PQITDINFQCSLSSRIAVIGPNGAGK 712
Query: 542 STLVNLLLRLYEPTNGQI 559
STL+N+L PT+G++
Sbjct: 713 STLINVLTGELLPTSGEV 730
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 638 LSGGQKQRIAIARAILRDPTILILDEATSALDAES 672
LSGGQK ++ +A + P +++LDE T+ LD +S
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 18/202 (8%)
Query: 509 YSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL--RLYEPTNGQILIDGFPI 566
+ S E +L+ +++ V+PGEV AI G +GSGKSTL L YE T G + G +
Sbjct: 8 HVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 67
Query: 567 KEVDIKWLRGRIGFVG-QEP-------KLFRMDISSNI--SYGCTQDIKQQDIEWAAKQA 616
+ + G F+ Q P F + + N SY + + + D + ++
Sbjct: 68 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 127
Query: 617 YAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNI 676
A ++ +P T + SGG+K+R I + + +P + ILDE+ S LD ++ +
Sbjct: 128 IA---LLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA---L 181
Query: 677 KGVLRAVRSDTMTRRTVLVIAH 698
K V V S +R+ +++ H
Sbjct: 182 KVVADGVNSLRDGKRSFIIVTH 203
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 18/202 (8%)
Query: 509 YSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL--RLYEPTNGQILIDGFPI 566
+ S E +L+ +++ V+PGEV AI G +GSGKSTL L YE T G + G +
Sbjct: 27 HVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86
Query: 567 KEVDIKWLRGRIGFVG-QEP-------KLFRMDISSNI--SYGCTQDIKQQDIEWAAKQA 616
+ + G F+ Q P F + + N SY + + + D + ++
Sbjct: 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 146
Query: 617 YAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNI 676
A ++ +P T + SGG+K+R I + + +P + ILDE+ S LD ++ +
Sbjct: 147 IA---LLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA---L 200
Query: 677 KGVLRAVRSDTMTRRTVLVIAH 698
K V V S +R+ +++ H
Sbjct: 201 KVVADGVNSLRDGKRSFIIVTH 222
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 22/198 (11%)
Query: 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI--KEVDIKWLR 575
L V+ISVN G+V I G +GSGKSTL+N++ + G++ + I KE +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 576 GRIGFVGQEPKLFRMDISSNISYGCTQD-------------IKQQDIEWAAKQAYAHDFI 622
G + L M + N+ G I ++ E ++A+
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKE--EEMVEKAFKILEF 140
Query: 623 MSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRA 682
+ L Y+ + LSGGQ + + I RA++ +P ++++D+ + + H+I +
Sbjct: 141 LKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLE 198
Query: 683 VRSDTMTRRTVLVIAHRL 700
+++ + T L+I HRL
Sbjct: 199 LKAKGI---TFLIIEHRL 213
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 22/138 (15%)
Query: 532 AIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMD 591
I G +G GKSTL + NGQ+ DGFP +E + + + G +D
Sbjct: 459 GICGPNGCGKSTLXRAI------ANGQV--DGFPTQE-ECRTVYVEHDIDGTHSDTSVLD 509
Query: 592 ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651
G + IK + IE+ + + I S LSGG K ++A+ARA
Sbjct: 510 FVFESGVGTKEAIKDKLIEFG----FTDEXIAXPISA---------LSGGWKXKLALARA 556
Query: 652 ILRDPTILILDEATSALD 669
+LR+ IL+LDE T+ LD
Sbjct: 557 VLRNADILLLDEPTNHLD 574
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 481 MPSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSG 540
P ++ K Q+ + ++ + + +S+ P + +N + +A+ G +G+G
Sbjct: 649 FPEPGYLEGVKTKQKAIVKVTNXEFQYPGTSK---PQITDINFQCSLSSRIAVIGPNGAG 705
Query: 541 KSTLVNLLLRLYEPTNGQI 559
KSTL+N+L PT+G++
Sbjct: 706 KSTLINVLTGELLPTSGEV 724
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 638 LSGGQKQRIAIARAILRDPTILILDEATSALDAES 672
LSGGQK ++ +A + P +++LDE T+ LD +S
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 930
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 22/138 (15%)
Query: 532 AIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMD 591
I G +G GKSTL + NGQ+ DGFP +E + + + G +D
Sbjct: 465 GICGPNGCGKSTLXRAI------ANGQV--DGFPTQE-ECRTVYVEHDIDGTHSDTSVLD 515
Query: 592 ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651
G + IK + IE+ + + I S LSGG K ++A+ARA
Sbjct: 516 FVFESGVGTKEAIKDKLIEFG----FTDEXIAXPISA---------LSGGWKXKLALARA 562
Query: 652 ILRDPTILILDEATSALD 669
+LR+ IL+LDE T+ LD
Sbjct: 563 VLRNADILLLDEPTNHLD 580
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 481 MPSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSG 540
P ++ K Q+ + ++ + + +S+ P + +N + +A+ G +G+G
Sbjct: 655 FPEPGYLEGVKTKQKAIVKVTNXEFQYPGTSK---PQITDINFQCSLSSRIAVIGPNGAG 711
Query: 541 KSTLVNLLLRLYEPTNGQI 559
KSTL+N+L PT+G++
Sbjct: 712 KSTLINVLTGELLPTSGEV 730
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 638 LSGGQKQRIAIARAILRDPTILILDEATSALDAES 672
LSGGQK ++ +A + P +++LDE T+ LD +S
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 24/195 (12%)
Query: 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT--NGQILIDGFPIKEVDIKWL 574
+L+ VN+ V GEV A+ G +G+GKSTL +L E T G+IL+DG I E+
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE- 76
Query: 575 RGRIG--FVGQEP---------KLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIM 623
R R G Q P R+ + + + +++ + K+A ++
Sbjct: 77 RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLG----REVGVAEFWTKVKKALE---LL 129
Query: 624 SLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAV 683
Y + ++ SGG+K+R I + ++ +PT +LDE S LD ++ +K V R V
Sbjct: 130 DWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDA---LKVVARGV 186
Query: 684 RSDTMTRRTVLVIAH 698
+ LVI H
Sbjct: 187 NAMRGPNFGALVITH 201
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 22/198 (11%)
Query: 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI--KEVDIKWLR 575
L V+ISV G+V I G +GSGKSTL+N++ + G++ + I KE +
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 576 GRIGFVGQEPKLFRMDISSNISYGCTQD-------------IKQQDIEWAAKQAYAHDFI 622
G + L M + N+ G I ++ E ++A+
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKE--EEMVEKAFKILEF 140
Query: 623 MSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRA 682
+ L Y+ + LSGGQ + + I RA++ +P ++++DE + + H+I +
Sbjct: 141 LKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 683 VRSDTMTRRTVLVIAHRL 700
+++ + T L+I HRL
Sbjct: 199 LKAKGI---TFLIIEHRL 213
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 14/160 (8%)
Query: 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577
L+++N+ VN GE V I G +GSGK+TL+ + L P +G I I+G ++++ R
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-----RNY 73
Query: 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDL 637
I + P+ + + ++ N +++K D + + + +L G E L
Sbjct: 74 IRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFL------EMLKALKLGEEILRRKLY 127
Query: 638 -LSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNI 676
LS GQ + + A+ P I+ LDE +DA H I
Sbjct: 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVI 167
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 29/212 (13%)
Query: 505 VSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF 564
V+ RYS+ H + PG+V+ + G +G GKST + +L +P G+ D
Sbjct: 83 VTHRYSANSFK---LHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF--DDP 137
Query: 565 PIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQ--------------DIE 610
P + IK+ RG K+ DI + I +I + +E
Sbjct: 138 PEWQEIIKYFRGS-ELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME 196
Query: 611 WAAKQAYAHDFIMSLPSGYETLVDDDL--LSGGQKQRIAIARAILRDPTILILDEATSAL 668
+ + + I+ L E ++ D+ LSGG+ QR AI + +++ + + DE +S L
Sbjct: 197 KSPEDVKRYIKILQL----ENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYL 252
Query: 669 DAESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700
D + N ++R++ + T + V+ + H L
Sbjct: 253 DVKQRLNAAQIIRSLLAPT---KYVICVEHDL 281
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 26/175 (14%)
Query: 529 EVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLF 588
E++ + G +G+GK+TL+ LL +P GQ P V +K + F G +LF
Sbjct: 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQ----DIPKLNVSMKPQKIAPKFPGTVRQLF 434
Query: 589 RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDL--LSGGQKQRI 646
I + D + P + ++D ++ LSGG+ QR+
Sbjct: 435 FKKIRGQF----------------LNPQFQTDVVK--PLRIDDIIDQEVQHLSGGELQRV 476
Query: 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701
AI A+ I ++DE ++ LD+E V+R R ++T ++ H I
Sbjct: 477 AIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR--RFILHNKKTAFIVEHDFI 529
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL-RG 576
++ +++ V G++V + G +G+GK+T ++ + L G+I+ +G I + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 577 RIGFVGQEPKLF-RMDISSNISYGC-----TQDIKQQDIEWAAKQAYAHDFIMSL-PSGY 629
I V + ++F + + N+ G + IK +D+EW I SL P
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIK-RDLEW----------IFSLFPRLK 130
Query: 630 ETLVD-DDLLSGGQKQRIAIARAILRDPTILILDEATSAL 668
E L LSGG++Q +AI RA+ P +L DE + L
Sbjct: 131 ERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGL 170
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 634 DDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTV 693
D ++LSGG QR+ +A ++LR+ + I D+ +S LD N+ +R + + + V
Sbjct: 135 DANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL----LKNKYV 190
Query: 694 LVIAHRLI 701
+V+ H LI
Sbjct: 191 IVVDHDLI 198
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 38/188 (20%)
Query: 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFV 581
N GE++ I G +G GK+T +L+ G + P K++ +
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVT----PEKQI-----------L 332
Query: 582 GQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHD--FI------MSLPSGYETLV 633
+P+ + + QQ +E A+K A + F ++L E+ V
Sbjct: 333 SYKPQRIFPNYDGTV---------QQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNV 383
Query: 634 DDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTV 693
+D LSGG+ Q++ IA + ++ + +LD+ +S LD E + V +A++ T R+ V
Sbjct: 384 ND--LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYI---VAKAIKRVTRERKAV 438
Query: 694 -LVIAHRL 700
+I H L
Sbjct: 439 TFIIDHDL 446
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL 549
L++V++ + G VA+ G+SGSGKSTLVN +L
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 48/106 (45%), Gaps = 22/106 (20%)
Query: 618 AHDFIMSLPS---GYETLVDDDL-----------LSGGQKQRIAIARAILRDP---TILI 660
A DF S+P ETL D L LSGG+ QR+ +A + R T+ I
Sbjct: 812 ALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYI 871
Query: 661 LDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRL--ISTA 704
LDE T+ L + +I +L + TVLVI H L I TA
Sbjct: 872 LDEPTTGLHVD---DIARLLDVLHRLVDNGDTVLVIEHNLDVIKTA 914
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 518 LQHVNISVNPGEVVAIAGLSGSGKSTLV 545
L+++++ + G++V + GLSGSGKS+L
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLA 61
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL 549
L++V++ + G VA+ G+SGSGKSTLVN +L
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 48/106 (45%), Gaps = 22/106 (20%)
Query: 618 AHDFIMSLPS---GYETLVDDDL-----------LSGGQKQRIAIARAILRDP---TILI 660
A DF S+P ETL D L LSGG+ QR+ +A + R T+ I
Sbjct: 812 ALDFFASIPKIKRKLETLYDVGLGYXKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYI 871
Query: 661 LDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRL--ISTA 704
LDE T+ L + +I +L + TVLVI H L I TA
Sbjct: 872 LDEPTTGLHVD---DIARLLDVLHRLVDNGDTVLVIEHNLDVIKTA 914
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 518 LQHVNISVNPGEVVAIAGLSGSGKSTLV 545
L+++++ + G++V + GLSGSGKS+L
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLA 61
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL 549
L++V++ + G VA+ G+SGSGKSTLVN +L
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 48/106 (45%), Gaps = 22/106 (20%)
Query: 618 AHDFIMSLPS---GYETLVDDDL-----------LSGGQKQRIAIARAILRDP---TILI 660
A DF S+P ETL D L LSGG+ QR+ +A + R T+ I
Sbjct: 510 ALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYI 569
Query: 661 LDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRL--ISTA 704
LDE T+ L + +I +L + TVLVI H L I TA
Sbjct: 570 LDEPTTGLHVD---DIARLLDVLHRLVDNGDTVLVIEHNLDVIKTA 612
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 518 LQHVNISVNPGEVVAIAGLSGSGKSTLV 545
L+++++ + G++V + GLSGSGKS+L
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLA 61
>pdb|2NNY|A Chain A, Crystal Structure Of The Ets1 Dimer Dna Complex.
pdb|2NNY|B Chain B, Crystal Structure Of The Ets1 Dimer Dna Complex
Length = 171
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 532 AIAGLSGSGKSTLVNLLLRLYEPTNGQILI----DGFPIKEVDIKWLRGRIGFVGQEPKL 587
A+AG +GSG L LL L + Q I DG+ K D + R G +PK+
Sbjct: 55 ALAGYTGSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKM 114
Query: 588 FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPS--GY 629
+S + Y ++I I A + Y + F+ L S GY
Sbjct: 115 NYEKLSRGLRYYYDKNI----IHKTAGKRYVYRFVSDLQSLLGY 154
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL 549
L+ +++S G + ++ G+SGSGKSTLVN +L
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 638 LSGGQKQRIAIARAILRDP---TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVL 694
LSGG+ QR+ +A + + T+ ILDE T+ L + +I+ +L + TV+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFD---DIRKLLNVINGLVDKGNTVI 920
Query: 695 VIAHRL 700
VI H L
Sbjct: 921 VIEHNL 926
>pdb|1GVJ|A Chain A, Ets-1 Dna Binding And Autoinhibitory Domains
pdb|1GVJ|B Chain B, Ets-1 Dna Binding And Autoinhibitory Domains
Length = 146
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 532 AIAGLSGSGKSTLVNLLLRLYEPTNGQILI----DGFPIKEVDIKWLRGRIGFVGQEPKL 587
A+AG +GSG L LL L + Q I DG+ K D + R G +PK+
Sbjct: 30 ALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKM 89
Query: 588 FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPS--GY 629
+S + Y ++I I A + Y + F+ L S GY
Sbjct: 90 NYEKLSRGLRYYYDKNI----IHKTAGKRYVYRFVCDLQSLLGY 129
>pdb|1MDM|B Chain B, Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5
Bound To Dna
Length = 161
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 532 AIAGLSGSGKSTLVNLLLRLYEPTNGQILI----DGFPIKEVDIKWLRGRIGFVGQEPKL 587
A+AG +GSG L LL L + Q I DG+ K D + R G +PK+
Sbjct: 46 ALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKM 105
Query: 588 FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPS--GY 629
+S + Y ++I I A + Y + F+ L S GY
Sbjct: 106 NYEKLSRGLRYYYDKNI----IHKTAGKRYVYRFVCDLQSLLGY 145
>pdb|3RI4|A Chain A, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
pdb|3RI4|D Chain D, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
Length = 163
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 532 AIAGLSGSGKSTLVNLLLRLYEPTNGQILI----DGFPIKEVDIKWLRGRIGFVGQEPKL 587
A+AG +GSG L LL L + Q I DG+ K D + R G +PK+
Sbjct: 47 ALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKM 106
Query: 588 FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPS--GY 629
+S + Y ++I I A + Y + F+ L S GY
Sbjct: 107 NYEKLSRGLRYYYDKNI----IHKTAGKRYVYRFVCDLQSLLGY 146
>pdb|3MFK|A Chain A, Ets1 Complex With Stromelysin-1 Promoter Dna
pdb|3MFK|B Chain B, Ets1 Complex With Stromelysin-1 Promoter Dna
Length = 162
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 532 AIAGLSGSGKSTLVNLLLRLYEPTNGQILI----DGFPIKEVDIKWLRGRIGFVGQEPKL 587
A+AG +GSG L LL L + Q I DG+ K D + R G +PK+
Sbjct: 46 ALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKM 105
Query: 588 FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPS--GY 629
+S + Y ++I I A + Y + F+ L S GY
Sbjct: 106 NYEKLSRGLRYYYDKNI----IHKTAGKRYVYRFVCDLQSLLGY 145
>pdb|1MD0|A Chain A, Crystal Structure Of An Inhibited Fragment Of Ets-1
pdb|1MD0|B Chain B, Crystal Structure Of An Inhibited Fragment Of Ets-1
Length = 141
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 532 AIAGLSGSGKSTLVNLLLRLYEPTNGQILI----DGFPIKEVDIKWLRGRIGFVGQEPKL 587
A+AG +GSG L LL L + Q I DG+ K D + R G +PK+
Sbjct: 26 ALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKM 85
Query: 588 FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPS--GY 629
+S + Y ++I I A + Y + F+ L S GY
Sbjct: 86 NYEKLSRGLRYYYDKNI----IHKTAGKRYVYRFVCDLQSLLGY 125
>pdb|1R36|A Chain A, Nmr-Based Structure Of Autoinhibited Murine Ets-1
Deltan301
Length = 140
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 532 AIAGLSGSGKSTLVNLLLRLYEPTNGQILI----DGFPIKEVDIKWLRGRIGFVGQEPKL 587
A+AG +GSG L LL L + Q I DG+ K D + R G +PK+
Sbjct: 25 ALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKM 84
Query: 588 FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPS--GY 629
+S + Y ++I I A + Y + F+ L S GY
Sbjct: 85 NYEKLSRGLRYYYDKNI----IHKTAGKRYVYRFVSDLQSLLGY 124
>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
Length = 430
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 519 QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR-LYEPTNGQILI 561
Q +N++ P VV +AGL G+GK+T V L + L E ++L+
Sbjct: 90 QTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLV 133
>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 433
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 519 QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR-LYEPTNGQILI 561
Q +N++ P VV +AGL G+GK+T V L + L E ++L+
Sbjct: 91 QTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLV 134
>pdb|4FQZ|A Chain A, Crystal Structure Of A Protease-Resistant Mutant Form Of
Human Galectin-8
pdb|3VKL|A Chain A, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Two Lactose Molecules
pdb|3VKL|B Chain B, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Two Lactose Molecules
pdb|3VKM|A Chain A, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Sialyllactose And Lactose
pdb|3VKM|B Chain B, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Sialyllactose And Lactose
Length = 291
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 496 LMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAG-LSGSGKSTLVNLL 548
+ G+++ + F +SS +P +N + PG V + G ++ + KS V+LL
Sbjct: 140 IYGKVNIHSIGFSFSSHMRLPFAARLNTPMGPGRTVVVKGEVNANAKSFNVDLL 193
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 622 IMSLPSGYETLVDDDLLSGGQKQRIAIARAI----LRDPTILILDEATSALDAESEHNIK 677
I++ P G + L + +LLSGG++ AIA +R +LDE +ALD +
Sbjct: 314 IIAQPPG-KKLQNLNLLSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFA 372
Query: 678 GVLRAVRSDTMTRRTVLVIAHR 699
L+ SDT +VI HR
Sbjct: 373 QYLKKYSSDTQ----FIVITHR 390
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 638 LSGGQKQRIAIA---RAILRDPTILILDEATSAL-DAESEHNIKGVLRAVRSDTMTRRTV 693
LSGG+ QRI +A R R T+ +LDE T+ L A+ E + +++ V + TV
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGN----TV 786
Query: 694 LVIAHRLISTALS 706
+ + H++ A S
Sbjct: 787 IAVEHKMQVVAAS 799
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 638 LSGGQKQRIAIARAIL-RDP--TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVL 694
LSGG+ QRI +A + RD T+ ILDE T L E +++ ++ + TV+
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFE---DVRKLVEVLHRLVDRGNTVI 862
Query: 695 VIAHRL 700
VI H L
Sbjct: 863 VIEHNL 868
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 518 LQHVNISVNPGEVVAIAGLSGSGKSTLV 545
L+++++ + G V + G+SGSGKS+LV
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLV 627
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 638 LSGGQKQRIAIARAILRDPT--ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLV 695
LSGG+ QRI +A I T I +LDE T L + L+ +R TV+V
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD---LGNTVIV 521
Query: 696 IAH 698
+ H
Sbjct: 522 VEH 524
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 40/178 (22%)
Query: 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQE 584
V GE++ + G +G+GKSTL L R T+G +G I F GQ
Sbjct: 23 VRAGEILHLVGPNGAGKSTL---LARXAGXTSG-----------------KGSIQFAGQP 62
Query: 585 PKLFR-MDISSNISYGCTQDIKQ-QDIEWAAKQAYAHD----FIMSLPSGYETLVDDDL- 637
+ + ++ + +Y Q W + HD +++ +G L DD L
Sbjct: 63 LEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL-DDKLG 121
Query: 638 -----LSGGQKQRIAIARAILR-----DPT--ILILDEATSALDAESEHNIKGVLRAV 683
LSGG+ QR+ +A +L+ +P +L+LDE ++LD + + +L A+
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL 179
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 40/178 (22%)
Query: 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQE 584
V GE++ + G +G+GKSTL L R T+G +G I F GQ
Sbjct: 23 VRAGEILHLVGPNGAGKSTL---LARXAGXTSG-----------------KGSIQFAGQP 62
Query: 585 PKLFR-MDISSNISYGCTQDIKQ-QDIEWAAKQAYAHD----FIMSLPSGYETLVDDDL- 637
+ + ++ + +Y Q W + HD +++ +G L DD L
Sbjct: 63 LEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL-DDKLG 121
Query: 638 -----LSGGQKQRIAIARAILR-----DPT--ILILDEATSALDAESEHNIKGVLRAV 683
LSGG+ QR+ +A +L+ +P +L+LDE ++LD + + +L A+
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL 179
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI----GF 580
+ G VV + GL GSGK+T+ L L + +G+ ++ +D W R + GF
Sbjct: 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK-------EGYRVEVLDGDWARTTVSEGAGF 62
Query: 581 VGQE 584
+E
Sbjct: 63 TREE 66
>pdb|3FYS|A Chain A, Crystal Structure Of Degv, A Fatty Acid Binding Protein
From Bacillus Subtilis
Length = 315
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 339 LIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVY 376
L G Y KAA+L++ +S ++ +E + +TVR Y
Sbjct: 155 LAQGFYALKAAELIKNGASSPEDIIKELEEMKKTVRAY 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,632,801
Number of Sequences: 62578
Number of extensions: 723582
Number of successful extensions: 2616
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2311
Number of HSP's gapped (non-prelim): 171
length of query: 709
length of database: 14,973,337
effective HSP length: 106
effective length of query: 603
effective length of database: 8,340,069
effective search space: 5029061607
effective search space used: 5029061607
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)