Query 005203
Match_columns 709
No_of_seqs 304 out of 2809
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 19:44:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 1E-114 2E-119 970.2 62.5 532 168-706 133-669 (716)
2 COG2274 SunT ABC-type bacterio 100.0 3E-113 7E-118 992.0 68.9 583 95-706 83-674 (709)
3 TIGR01193 bacteriocin_ABC ABC- 100.0 2E-101 4E-106 913.4 72.1 592 94-708 82-676 (708)
4 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 7E-101 1E-105 908.8 71.1 588 95-708 83-679 (710)
5 TIGR03375 type_I_sec_LssB type 100.0 2E-100 3E-105 903.3 72.9 591 96-708 71-667 (694)
6 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.1E-99 2E-104 895.1 73.8 582 93-708 65-652 (686)
7 TIGR01846 type_I_sec_HlyB type 100.0 5.4E-97 1E-101 872.9 73.5 587 95-708 69-659 (694)
8 KOG0055 Multidrug/pheromone ex 100.0 4E-95 9E-100 852.2 65.8 528 170-705 652-1190(1228)
9 TIGR02868 CydC thiol reductant 100.0 1.8E-92 3.9E-97 810.6 69.1 520 172-700 3-529 (529)
10 TIGR00958 3a01208 Conjugate Tr 100.0 5.2E-92 1.1E-96 831.1 71.9 537 163-708 142-681 (711)
11 PRK11174 cysteine/glutathione 100.0 2.8E-91 6.2E-96 810.3 72.1 529 169-708 9-551 (588)
12 COG1132 MdlB ABC-type multidru 100.0 9.4E-89 2E-93 785.9 70.6 526 170-708 4-531 (567)
13 PRK11176 lipid transporter ATP 100.0 6.4E-88 1.4E-92 781.4 73.1 536 165-708 8-546 (582)
14 PTZ00265 multidrug resistance 100.0 8.9E-88 1.9E-92 838.2 72.4 532 170-708 813-1426(1466)
15 PRK11160 cysteine/glutathione 100.0 3.7E-87 7.9E-92 772.9 71.4 527 172-708 6-541 (574)
16 TIGR02857 CydD thiol reductant 100.0 3.4E-87 7.4E-92 766.9 70.6 519 181-708 2-524 (529)
17 KOG0055 Multidrug/pheromone ex 100.0 4.5E-89 9.7E-94 801.2 49.6 477 226-708 76-555 (1228)
18 TIGR02203 MsbA_lipidA lipid A 100.0 3.4E-86 7.3E-91 765.3 72.0 529 172-708 4-535 (571)
19 PRK10790 putative multidrug tr 100.0 1.6E-85 3.5E-90 762.7 73.2 531 165-708 6-542 (592)
20 PRK13657 cyclic beta-1,2-gluca 100.0 1.6E-84 3.5E-89 753.7 74.0 531 168-708 5-537 (588)
21 TIGR01192 chvA glucan exporter 100.0 4.6E-84 1E-88 748.3 73.9 532 167-708 4-537 (585)
22 TIGR02204 MsbA_rel ABC transpo 100.0 4.8E-84 1E-88 748.1 72.4 534 169-708 5-542 (576)
23 PRK10789 putative multidrug tr 100.0 9.6E-83 2.1E-87 735.6 68.4 509 191-708 4-517 (569)
24 TIGR01842 type_I_sec_PrtD type 100.0 1.9E-81 4.2E-86 721.5 70.2 517 178-708 2-521 (544)
25 KOG0056 Heavy metal exporter H 100.0 2.3E-85 5E-90 696.1 31.4 504 191-705 224-738 (790)
26 KOG0057 Mitochondrial Fe/S clu 100.0 5.1E-82 1.1E-86 685.4 53.7 529 167-705 14-551 (591)
27 COG4988 CydD ABC-type transpor 100.0 7.2E-80 1.6E-84 678.7 66.5 474 227-709 46-523 (559)
28 TIGR00957 MRP_assoc_pro multi 100.0 1.7E-80 3.7E-85 779.8 69.9 507 189-705 972-1485(1522)
29 PTZ00265 multidrug resistance 100.0 8.3E-80 1.8E-84 766.8 70.4 525 178-708 56-647 (1466)
30 TIGR01194 cyc_pep_trnsptr cycl 100.0 2.9E-79 6.3E-84 704.5 65.4 520 170-708 5-538 (555)
31 PLN03130 ABC transporter C fam 100.0 6.5E-79 1.4E-83 765.2 71.7 509 183-708 916-1440(1622)
32 PTZ00243 ABC transporter; Prov 100.0 3.9E-78 8.5E-83 757.1 70.8 467 234-708 1011-1512(1560)
33 PLN03232 ABC transporter C fam 100.0 3.2E-78 7E-83 758.3 69.3 468 228-708 957-1437(1495)
34 COG4618 ArpD ABC-type protease 100.0 3.8E-79 8.2E-84 656.8 49.9 511 177-705 18-537 (580)
35 COG4987 CydC ABC-type transpor 100.0 1.3E-77 2.8E-82 650.7 59.6 518 180-705 14-538 (573)
36 COG5265 ATM1 ABC-type transpor 100.0 2.6E-79 5.6E-84 645.3 36.6 459 241-706 2-464 (497)
37 TIGR01271 CFTR_protein cystic 100.0 4E-74 8.7E-79 720.3 71.0 463 234-708 938-1419(1490)
38 KOG0054 Multidrug resistance-a 100.0 2.2E-73 4.7E-78 683.3 58.1 509 188-706 823-1340(1381)
39 PRK10522 multidrug transporter 100.0 3.1E-72 6.7E-77 645.5 64.8 510 173-708 4-517 (547)
40 PLN03232 ABC transporter C fam 100.0 7.7E-70 1.7E-74 682.7 69.2 503 177-708 296-807 (1495)
41 TIGR00954 3a01203 Peroxysomal 100.0 2.3E-69 4.9E-74 632.0 62.1 521 166-708 75-646 (659)
42 PLN03130 ABC transporter C fam 100.0 5.6E-69 1.2E-73 675.5 69.5 501 176-708 295-807 (1622)
43 TIGR00957 MRP_assoc_pro multi 100.0 1.2E-62 2.6E-67 618.5 69.8 508 176-708 311-829 (1522)
44 TIGR01271 CFTR_protein cystic 100.0 2.3E-59 5E-64 587.3 69.5 503 177-708 75-615 (1490)
45 PTZ00243 ABC transporter; Prov 100.0 3.7E-57 8.1E-62 567.9 67.5 510 175-708 237-849 (1560)
46 KOG0054 Multidrug resistance-a 100.0 2E-56 4.3E-61 537.2 61.3 502 177-704 196-707 (1381)
47 COG4178 ABC-type uncharacteriz 100.0 1.1E-44 2.3E-49 406.4 57.8 468 216-705 81-579 (604)
48 cd03289 ABCC_CFTR2 The CFTR su 100.0 3.7E-48 8E-53 407.6 23.8 202 498-708 1-204 (275)
49 COG1126 GlnQ ABC-type polar am 100.0 1.1E-46 2.3E-51 369.6 18.4 195 499-708 2-204 (240)
50 COG1117 PstB ABC-type phosphat 100.0 1.4E-46 3E-51 367.1 17.9 199 498-708 6-216 (253)
51 COG4615 PvdE ABC-type sideroph 100.0 2.1E-42 4.6E-47 361.9 49.4 498 174-701 5-510 (546)
52 cd03244 ABCC_MRP_domain2 Domai 100.0 3.8E-45 8.2E-50 373.0 24.5 203 498-708 1-205 (221)
53 cd03252 ABCC_Hemolysin The ABC 100.0 3.6E-45 7.8E-50 377.3 23.5 202 500-708 1-204 (237)
54 PRK14257 phosphate ABC transpo 100.0 3.7E-45 8.1E-50 394.2 24.0 200 497-708 78-292 (329)
55 COG1135 AbcC ABC-type metal io 100.0 1.3E-45 2.9E-50 378.7 18.8 199 500-709 2-211 (339)
56 cd03254 ABCC_Glucan_exporter_l 100.0 9.3E-45 2E-49 372.1 23.4 203 498-708 1-205 (229)
57 cd03248 ABCC_TAP TAP, the Tran 100.0 2E-44 4.3E-49 369.1 23.5 207 496-708 8-216 (226)
58 cd03288 ABCC_SUR2 The SUR doma 100.0 4.4E-44 9.5E-49 374.0 25.3 206 495-708 15-222 (257)
59 cd03251 ABCC_MsbA MsbA is an e 100.0 3.5E-44 7.6E-49 369.0 23.9 202 500-708 1-204 (234)
60 cd03245 ABCC_bacteriocin_expor 100.0 4.5E-44 9.8E-49 364.9 24.0 204 498-708 1-206 (220)
61 cd03253 ABCC_ATM1_transporter 100.0 3.8E-44 8.2E-49 369.3 23.4 201 500-708 1-203 (236)
62 TIGR00960 3a0501s02 Type II (G 100.0 1.6E-44 3.4E-49 367.3 20.3 196 500-708 2-206 (216)
63 cd03250 ABCC_MRP_domain1 Domai 100.0 9.7E-44 2.1E-48 358.5 22.8 190 500-708 1-195 (204)
64 COG1120 FepC ABC-type cobalami 100.0 3.5E-44 7.6E-49 367.9 19.7 196 499-708 2-207 (258)
65 COG1136 SalX ABC-type antimicr 100.0 7.6E-44 1.6E-48 358.8 21.8 197 500-708 2-210 (226)
66 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 9.7E-44 2.1E-48 366.8 23.1 203 500-708 1-205 (238)
67 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 9.8E-44 2.1E-48 362.8 21.2 192 499-708 4-207 (254)
68 COG1116 TauB ABC-type nitrate/ 100.0 9.7E-44 2.1E-48 358.4 19.3 188 499-705 3-196 (248)
69 TIGR02314 ABC_MetN D-methionin 100.0 1.5E-43 3.3E-48 382.8 21.5 198 500-708 2-209 (343)
70 COG1125 OpuBA ABC-type proline 100.0 1.2E-43 2.6E-48 354.4 17.2 193 500-707 2-203 (309)
71 TIGR02673 FtsE cell division A 100.0 3.6E-43 7.8E-48 356.7 20.7 195 500-708 2-205 (214)
72 cd03290 ABCC_SUR1_N The SUR do 100.0 8.6E-43 1.9E-47 355.2 23.5 200 501-708 2-209 (218)
73 cd03261 ABC_Org_Solvent_Resist 100.0 3.7E-43 8E-48 361.9 21.0 195 500-708 1-205 (235)
74 cd03225 ABC_cobalt_CbiO_domain 100.0 3.6E-43 7.7E-48 356.0 20.4 195 501-708 1-202 (211)
75 COG3839 MalK ABC-type sugar tr 100.0 3.8E-43 8.2E-48 373.1 21.0 195 498-708 2-202 (338)
76 cd03260 ABC_PstB_phosphate_tra 100.0 4.4E-43 9.5E-48 359.4 20.6 195 500-708 1-208 (227)
77 PRK13631 cbiO cobalt transport 100.0 1.2E-42 2.6E-47 373.6 24.9 200 499-708 21-244 (320)
78 COG2884 FtsE Predicted ATPase 100.0 2E-43 4.4E-48 339.3 16.7 192 500-705 2-202 (223)
79 cd03292 ABC_FtsE_transporter F 100.0 5.8E-43 1.3E-47 355.1 21.0 195 500-708 1-204 (214)
80 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 5.5E-43 1.2E-47 356.4 20.5 197 500-708 1-208 (218)
81 cd03226 ABC_cobalt_CbiO_domain 100.0 4.1E-43 8.9E-48 354.2 19.1 191 501-708 1-194 (205)
82 cd03266 ABC_NatA_sodium_export 100.0 8E-43 1.7E-47 355.2 20.9 196 500-708 2-204 (218)
83 COG3840 ThiQ ABC-type thiamine 100.0 4.8E-43 1E-47 334.1 17.6 191 500-708 2-198 (231)
84 PRK13650 cbiO cobalt transport 100.0 1.2E-42 2.6E-47 367.3 22.1 198 499-708 4-208 (279)
85 cd03259 ABC_Carb_Solutes_like 100.0 7.1E-43 1.5E-47 354.4 19.3 193 500-708 1-199 (213)
86 COG1122 CbiO ABC-type cobalt t 100.0 9.1E-43 2E-47 356.6 20.2 197 499-708 3-207 (235)
87 TIGR02211 LolD_lipo_ex lipopro 100.0 1.5E-42 3.2E-47 354.0 21.4 197 500-708 2-209 (221)
88 PRK13647 cbiO cobalt transport 100.0 1.9E-42 4.1E-47 364.9 22.0 196 499-708 4-206 (274)
89 PRK11629 lolD lipoprotein tran 100.0 1.9E-42 4.2E-47 356.2 21.3 197 499-706 5-212 (233)
90 cd03256 ABC_PhnC_transporter A 100.0 1.8E-42 4E-47 357.7 21.1 196 500-708 1-213 (241)
91 PRK10908 cell division protein 100.0 2.5E-42 5.3E-47 352.8 21.5 195 500-708 2-205 (222)
92 cd03235 ABC_Metallic_Cations A 100.0 1E-42 2.2E-47 353.3 18.3 188 501-708 1-200 (213)
93 cd03268 ABC_BcrA_bacitracin_re 100.0 1.9E-42 4.1E-47 350.0 20.2 192 500-708 1-194 (208)
94 TIGR02315 ABC_phnC phosphonate 100.0 2.8E-42 6E-47 356.9 21.4 196 500-708 2-214 (243)
95 cd03263 ABC_subfamily_A The AB 100.0 1.8E-42 4E-47 353.0 19.7 194 500-708 1-200 (220)
96 cd03369 ABCC_NFT1 Domain 2 of 100.0 6.5E-42 1.4E-46 346.0 23.1 187 498-708 5-191 (207)
97 cd03262 ABC_HisP_GlnQ_permease 100.0 2.8E-42 6E-47 349.8 20.0 194 500-708 1-203 (213)
98 cd03219 ABC_Mj1267_LivG_branch 100.0 3.1E-42 6.7E-47 355.1 20.5 200 500-708 1-211 (236)
99 PRK14269 phosphate ABC transpo 100.0 3.5E-42 7.7E-47 357.2 20.8 198 499-708 2-209 (246)
100 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.9E-42 6.3E-47 351.8 19.5 194 500-709 1-201 (220)
101 cd03264 ABC_drug_resistance_li 100.0 3.5E-42 7.6E-47 348.8 19.8 191 500-708 1-197 (211)
102 PRK11153 metN DL-methionine tr 100.0 4.3E-42 9.3E-47 373.0 21.4 198 500-708 2-209 (343)
103 cd03224 ABC_TM1139_LivF_branch 100.0 7.3E-42 1.6E-46 348.9 21.7 198 500-708 1-200 (222)
104 cd03301 ABC_MalK_N The N-termi 100.0 4.6E-42 1E-46 348.3 20.1 193 500-708 1-199 (213)
105 PRK14250 phosphate ABC transpo 100.0 1E-41 2.2E-46 352.8 22.8 196 499-708 3-200 (241)
106 cd03296 ABC_CysA_sulfate_impor 100.0 5.6E-42 1.2E-46 354.2 20.7 194 499-708 2-205 (239)
107 PRK13643 cbiO cobalt transport 100.0 6.5E-42 1.4E-46 363.3 21.6 197 500-708 2-212 (288)
108 PRK11650 ugpC glycerol-3-phosp 100.0 6.4E-42 1.4E-46 372.7 22.1 195 499-708 3-203 (356)
109 cd03231 ABC_CcmA_heme_exporter 100.0 1.1E-41 2.5E-46 342.9 21.9 192 500-708 1-193 (201)
110 PRK13637 cbiO cobalt transport 100.0 8.2E-42 1.8E-46 362.4 21.7 198 500-708 3-213 (287)
111 PRK10584 putative ABC transpor 100.0 1.4E-41 3E-46 348.5 22.2 198 499-708 6-214 (228)
112 PRK13635 cbiO cobalt transport 100.0 1.1E-41 2.5E-46 359.9 22.1 197 499-708 5-208 (279)
113 cd03258 ABC_MetN_methionine_tr 100.0 9.2E-42 2E-46 351.0 20.6 198 500-708 2-209 (233)
114 cd03246 ABCC_Protease_Secretio 100.0 1.7E-41 3.7E-46 333.6 21.2 163 500-708 1-163 (173)
115 PRK14242 phosphate transporter 100.0 9.1E-42 2E-46 355.4 20.3 196 499-708 6-216 (253)
116 PRK11247 ssuB aliphatic sulfon 100.0 1.9E-41 4E-46 353.9 22.3 190 499-708 12-202 (257)
117 PRK13646 cbiO cobalt transport 100.0 1.2E-41 2.5E-46 361.1 21.1 200 500-708 3-214 (286)
118 TIGR00972 3a0107s01c2 phosphat 100.0 1.3E-41 2.8E-46 353.2 20.8 197 500-708 2-211 (247)
119 PRK13632 cbiO cobalt transport 100.0 1.8E-41 3.9E-46 357.0 21.8 197 499-708 7-210 (271)
120 PRK14273 phosphate ABC transpo 100.0 1.2E-41 2.6E-46 354.8 20.3 198 499-708 7-217 (254)
121 cd03265 ABC_DrrA DrrA is the A 100.0 1.9E-41 4.1E-46 345.8 21.0 194 500-708 1-200 (220)
122 cd03218 ABC_YhbG The ABC trans 100.0 1.8E-41 3.9E-46 348.5 20.8 196 500-708 1-201 (232)
123 cd03269 ABC_putative_ATPase Th 100.0 1.3E-41 2.8E-46 344.4 19.5 190 500-708 1-196 (210)
124 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.2E-41 2.6E-46 352.3 19.7 196 500-708 1-204 (242)
125 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.7E-41 5.8E-46 342.4 21.6 191 500-708 1-197 (211)
126 PRK11432 fbpC ferric transport 100.0 1.3E-41 2.8E-46 369.4 20.5 194 499-708 6-205 (351)
127 PRK11124 artP arginine transpo 100.0 2.1E-41 4.7E-46 350.3 21.0 195 499-708 2-209 (242)
128 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.1E-41 2.4E-46 358.1 19.1 194 501-708 26-229 (269)
129 PRK13634 cbiO cobalt transport 100.0 1.7E-41 3.7E-46 360.4 20.6 200 499-708 2-214 (290)
130 PRK10744 pstB phosphate transp 100.0 2.4E-41 5.2E-46 353.9 21.3 198 497-708 11-223 (260)
131 PRK13652 cbiO cobalt transport 100.0 3.3E-41 7.1E-46 356.1 22.4 196 500-708 4-206 (277)
132 COG3842 PotA ABC-type spermidi 100.0 9.3E-42 2E-46 364.3 18.2 191 498-704 4-201 (352)
133 PRK13642 cbiO cobalt transport 100.0 3.9E-41 8.4E-46 355.5 22.7 198 499-708 4-208 (277)
134 PRK11231 fecE iron-dicitrate t 100.0 3E-41 6.5E-46 352.1 21.4 194 500-708 3-206 (255)
135 PRK13540 cytochrome c biogenes 100.0 3.5E-41 7.6E-46 339.0 21.1 192 500-708 2-194 (200)
136 PRK10575 iron-hydroxamate tran 100.0 3E-41 6.6E-46 354.1 21.6 196 499-708 11-216 (265)
137 PRK13636 cbiO cobalt transport 100.0 3.5E-41 7.5E-46 356.9 21.9 197 499-708 5-210 (283)
138 PRK14235 phosphate transporter 100.0 2.6E-41 5.6E-46 355.0 20.6 200 497-708 17-230 (267)
139 TIGR03608 L_ocin_972_ABC putat 100.0 2.4E-41 5.1E-46 341.2 19.5 191 502-708 1-201 (206)
140 PRK09536 btuD corrinoid ABC tr 100.0 3.2E-41 7E-46 371.1 22.2 195 499-708 3-207 (402)
141 PRK09493 glnQ glutamine ABC tr 100.0 3.1E-41 6.8E-46 348.7 20.7 194 500-708 2-204 (240)
142 PRK13538 cytochrome c biogenes 100.0 4E-41 8.8E-46 339.6 20.7 190 500-705 2-194 (204)
143 TIGR03265 PhnT2 putative 2-ami 100.0 3E-41 6.4E-46 367.1 21.0 194 499-708 4-203 (353)
144 PRK10247 putative ABC transpor 100.0 6.9E-41 1.5E-45 343.1 22.2 194 499-708 7-205 (225)
145 COG1124 DppF ABC-type dipeptid 100.0 2.5E-41 5.3E-46 338.1 18.3 198 499-708 3-210 (252)
146 PRK13644 cbiO cobalt transport 100.0 5.7E-41 1.2E-45 353.7 22.0 194 500-708 2-203 (274)
147 PRK14267 phosphate ABC transpo 100.0 2.4E-41 5.1E-46 352.3 18.9 198 499-708 4-216 (253)
148 PRK13651 cobalt transporter AT 100.0 4.2E-41 9.1E-46 359.5 21.2 198 499-708 2-233 (305)
149 TIGR01189 ccmA heme ABC export 100.0 3.7E-41 8.1E-46 338.2 19.6 190 500-705 1-192 (198)
150 PRK11614 livF leucine/isoleuci 100.0 4.8E-41 1E-45 346.7 20.9 198 499-708 5-205 (237)
151 cd03257 ABC_NikE_OppD_transpor 100.0 8.3E-41 1.8E-45 342.3 22.5 200 500-708 2-214 (228)
152 COG1127 Ttg2A ABC-type transpo 100.0 3.5E-41 7.5E-46 335.5 19.0 197 498-708 7-214 (263)
153 PRK13649 cbiO cobalt transport 100.0 5.4E-41 1.2E-45 354.9 21.3 196 500-708 3-213 (280)
154 TIGR03005 ectoine_ehuA ectoine 100.0 5.2E-41 1.1E-45 349.6 20.8 195 500-708 1-215 (252)
155 TIGR02982 heterocyst_DevA ABC 100.0 6.2E-41 1.3E-45 342.1 21.0 197 500-708 2-209 (220)
156 PRK11831 putative ABC transpor 100.0 5.3E-41 1.1E-45 353.0 20.8 196 499-708 7-212 (269)
157 cd03247 ABCC_cytochrome_bd The 100.0 4.8E-41 1E-45 331.9 19.3 164 500-708 1-164 (178)
158 PRK10851 sulfate/thiosulfate t 100.0 5.6E-41 1.2E-45 364.9 21.5 194 499-708 2-205 (353)
159 COG3638 ABC-type phosphate/pho 100.0 4.3E-41 9.4E-46 334.0 18.7 197 499-708 3-216 (258)
160 PRK14259 phosphate ABC transpo 100.0 9.1E-41 2E-45 351.2 22.2 198 498-709 12-222 (269)
161 TIGR01186 proV glycine betaine 100.0 2.5E-41 5.4E-46 367.7 18.5 183 515-708 6-198 (363)
162 PRK13633 cobalt transporter AT 100.0 7.2E-41 1.6E-45 354.0 21.5 198 499-708 4-212 (280)
163 PRK14247 phosphate ABC transpo 100.0 5.1E-41 1.1E-45 349.2 19.7 198 499-708 3-213 (250)
164 PRK11000 maltose/maltodextrin 100.0 6.2E-41 1.3E-45 367.0 21.3 194 499-708 3-202 (369)
165 PRK13638 cbiO cobalt transport 100.0 7.8E-41 1.7E-45 352.1 20.9 194 500-708 2-204 (271)
166 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 9.6E-41 2.1E-45 344.3 21.2 195 500-708 2-200 (236)
167 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.5E-40 7.5E-45 348.4 25.8 209 472-708 15-226 (282)
168 PRK10619 histidine/lysine/argi 100.0 9.2E-41 2E-45 348.8 21.1 197 498-708 4-220 (257)
169 PRK09452 potA putrescine/sperm 100.0 7.9E-41 1.7E-45 365.8 21.5 194 499-708 14-213 (375)
170 cd03230 ABC_DR_subfamily_A Thi 100.0 1.1E-40 2.4E-45 327.9 20.5 162 500-708 1-163 (173)
171 PRK13645 cbiO cobalt transport 100.0 9.3E-41 2E-45 354.7 21.4 204 497-708 4-219 (289)
172 TIGR03410 urea_trans_UrtE urea 100.0 1.5E-40 3.3E-45 341.3 22.3 194 500-708 1-200 (230)
173 PRK13640 cbiO cobalt transport 100.0 1.4E-40 2.9E-45 352.3 22.5 197 499-708 5-211 (282)
174 PRK13548 hmuV hemin importer A 100.0 1.6E-40 3.5E-45 347.2 22.8 195 500-708 3-209 (258)
175 PRK14240 phosphate transporter 100.0 9.7E-41 2.1E-45 347.1 21.0 199 498-708 2-213 (250)
176 TIGR01277 thiQ thiamine ABC tr 100.0 1.4E-40 3.1E-45 337.7 21.5 191 500-708 1-197 (213)
177 TIGR03411 urea_trans_UrtD urea 100.0 1.2E-40 2.6E-45 344.6 21.4 200 500-708 3-210 (242)
178 cd03229 ABC_Class3 This class 100.0 1.3E-40 2.9E-45 328.8 20.7 166 500-708 1-169 (178)
179 PRK11264 putative amino-acid A 100.0 9E-41 2E-45 347.2 20.5 196 500-708 4-212 (250)
180 PRK14237 phosphate transporter 100.0 9.3E-41 2E-45 350.8 20.7 198 497-708 18-230 (267)
181 PRK13648 cbiO cobalt transport 100.0 1.2E-40 2.6E-45 350.3 21.5 197 499-708 7-210 (269)
182 TIGR03873 F420-0_ABC_ATP propo 100.0 1.3E-40 2.9E-45 347.4 21.6 194 500-708 2-205 (256)
183 PRK14249 phosphate ABC transpo 100.0 1.4E-40 3E-45 346.2 21.5 196 499-708 4-214 (251)
184 PRK10895 lipopolysaccharide AB 100.0 1.6E-40 3.5E-45 343.5 21.4 197 499-708 3-205 (241)
185 PRK13641 cbiO cobalt transport 100.0 1.5E-40 3.3E-45 352.7 21.7 198 499-708 2-213 (287)
186 TIGR01166 cbiO cobalt transpor 100.0 8.4E-41 1.8E-45 333.4 18.2 176 515-702 5-189 (190)
187 PRK11300 livG leucine/isoleuci 100.0 2.2E-40 4.7E-45 345.4 22.0 200 499-708 5-222 (255)
188 PRK14251 phosphate ABC transpo 100.0 1.3E-40 2.8E-45 346.3 20.3 198 499-708 4-214 (251)
189 PRK11248 tauB taurine transpor 100.0 2E-40 4.3E-45 346.0 21.7 190 500-708 2-197 (255)
190 PRK14274 phosphate ABC transpo 100.0 1.3E-40 2.7E-45 348.2 20.2 198 499-708 12-222 (259)
191 PRK15079 oligopeptide ABC tran 100.0 1.8E-40 4E-45 358.1 21.7 199 499-708 8-230 (331)
192 PRK14245 phosphate ABC transpo 100.0 1.2E-40 2.6E-45 346.5 19.5 196 499-708 3-213 (250)
193 PRK14236 phosphate transporter 100.0 2E-40 4.3E-45 349.2 21.2 198 497-708 23-235 (272)
194 PRK10253 iron-enterobactin tra 100.0 2.1E-40 4.7E-45 347.7 21.4 197 498-708 6-212 (265)
195 TIGR01288 nodI ATP-binding ABC 100.0 1.8E-40 4E-45 354.7 21.1 194 499-708 4-203 (303)
196 PRK14239 phosphate transporter 100.0 1.7E-40 3.8E-45 345.5 20.4 196 499-708 5-215 (252)
197 TIGR02769 nickel_nikE nickel i 100.0 2.5E-40 5.4E-45 347.2 21.4 197 500-708 3-219 (265)
198 cd03300 ABC_PotA_N PotA is an 100.0 1.4E-40 3.1E-45 342.2 18.9 193 500-708 1-199 (232)
199 PRK13639 cbiO cobalt transport 100.0 2.4E-40 5.2E-45 349.1 21.1 195 500-708 2-205 (275)
200 TIGR03258 PhnT 2-aminoethylpho 100.0 1.8E-40 3.9E-45 361.6 20.7 197 497-708 3-207 (362)
201 PRK14256 phosphate ABC transpo 100.0 2.7E-40 5.9E-45 344.2 21.2 199 498-708 3-215 (252)
202 PRK13537 nodulation ABC transp 100.0 2E-40 4.3E-45 354.7 20.6 194 499-708 7-206 (306)
203 KOG0060 Long-chain acyl-CoA tr 100.0 1.9E-37 4.1E-42 338.7 44.1 468 215-703 116-630 (659)
204 PRK14260 phosphate ABC transpo 100.0 1.9E-40 4E-45 347.0 19.8 199 498-708 6-217 (259)
205 PRK14243 phosphate transporter 100.0 2.7E-40 5.8E-45 346.8 20.9 199 499-709 10-219 (264)
206 PRK11607 potG putrescine trans 100.0 2.5E-40 5.5E-45 362.3 21.7 195 498-708 18-218 (377)
207 cd03228 ABCC_MRP_Like The MRP 100.0 3.6E-40 7.9E-45 323.6 20.3 162 500-708 1-162 (171)
208 cd03234 ABCG_White The White s 100.0 1.4E-40 3.1E-45 340.8 18.1 199 500-708 4-212 (226)
209 PRK14248 phosphate ABC transpo 100.0 4.6E-40 1E-44 345.7 22.1 196 499-708 21-231 (268)
210 PRK14262 phosphate ABC transpo 100.0 2.2E-40 4.9E-45 344.4 19.5 196 499-708 3-213 (250)
211 PRK14253 phosphate ABC transpo 100.0 2.7E-40 5.8E-45 343.6 20.1 198 499-708 3-212 (249)
212 PRK10771 thiQ thiamine transpo 100.0 6.5E-40 1.4E-44 337.3 22.6 191 500-708 2-198 (232)
213 TIGR01978 sufC FeS assembly AT 100.0 2.8E-40 6.2E-45 341.8 19.9 196 500-708 1-213 (243)
214 PRK14244 phosphate ABC transpo 100.0 1.5E-40 3.2E-45 346.0 17.8 195 500-708 6-216 (251)
215 PRK14268 phosphate ABC transpo 100.0 3.4E-40 7.4E-45 344.8 20.5 198 499-708 12-221 (258)
216 PRK14261 phosphate ABC transpo 100.0 4.3E-40 9.4E-45 342.9 20.9 196 499-708 6-216 (253)
217 PRK13539 cytochrome c biogenes 100.0 4.7E-40 1E-44 332.6 20.5 188 500-705 3-192 (207)
218 TIGR00968 3a0106s01 sulfate AB 100.0 5.8E-40 1.3E-44 338.8 21.5 193 500-708 1-199 (237)
219 PRK13543 cytochrome c biogenes 100.0 5.7E-40 1.2E-44 333.8 20.7 192 499-708 11-205 (214)
220 PRK14270 phosphate ABC transpo 100.0 5.2E-40 1.1E-44 341.9 20.8 198 499-708 4-214 (251)
221 PRK10070 glycine betaine trans 100.0 3.6E-40 7.7E-45 362.6 20.6 182 516-708 42-233 (400)
222 PRK14254 phosphate ABC transpo 100.0 1E-39 2.2E-44 346.0 22.9 199 498-708 38-247 (285)
223 PRK14241 phosphate transporter 100.0 6.4E-40 1.4E-44 342.6 20.9 198 499-708 4-215 (258)
224 PRK14255 phosphate ABC transpo 100.0 4.9E-40 1.1E-44 342.2 19.7 196 499-708 5-215 (252)
225 PRK14238 phosphate transporter 100.0 8.7E-40 1.9E-44 344.2 21.7 196 499-708 24-234 (271)
226 PRK14258 phosphate ABC transpo 100.0 6.3E-40 1.4E-44 343.4 20.5 199 498-708 6-219 (261)
227 cd03215 ABC_Carb_Monos_II This 100.0 7.1E-40 1.5E-44 324.8 19.7 164 499-708 4-172 (182)
228 PRK14266 phosphate ABC transpo 100.0 7.4E-40 1.6E-44 340.5 20.2 198 499-708 3-213 (250)
229 PRK14271 phosphate ABC transpo 100.0 1.4E-39 3.1E-44 343.3 22.6 196 499-708 21-230 (276)
230 TIGR02324 CP_lyasePhnL phospho 100.0 9.9E-40 2.1E-44 333.9 20.6 198 500-708 2-217 (224)
231 PRK15112 antimicrobial peptide 100.0 1.1E-39 2.4E-44 342.6 21.5 199 499-708 4-218 (267)
232 PRK11308 dppF dipeptide transp 100.0 1.4E-39 3E-44 350.9 22.6 200 499-708 5-223 (327)
233 PRK09984 phosphonate/organopho 100.0 1.2E-39 2.6E-44 341.4 21.4 196 499-708 4-221 (262)
234 PRK14265 phosphate ABC transpo 100.0 1.7E-39 3.7E-44 342.5 22.0 198 499-708 20-228 (274)
235 PRK14252 phosphate ABC transpo 100.0 1.1E-39 2.3E-44 342.3 20.4 198 497-708 14-228 (265)
236 PRK13547 hmuV hemin importer A 100.0 1.8E-39 3.9E-44 341.7 22.1 193 500-708 2-223 (272)
237 cd03223 ABCD_peroxisomal_ALDP 100.0 1.2E-39 2.7E-44 318.5 19.4 155 500-708 1-155 (166)
238 PRK15056 manganese/iron transp 100.0 1.7E-39 3.7E-44 342.1 21.4 193 499-708 6-210 (272)
239 PRK13541 cytochrome c biogenes 100.0 1.2E-39 2.7E-44 326.5 19.3 186 500-705 2-188 (195)
240 TIGR03522 GldA_ABC_ATP gliding 100.0 1.3E-39 2.8E-44 347.8 20.5 192 500-708 3-200 (301)
241 PRK11144 modC molybdate transp 100.0 1.6E-39 3.5E-44 354.0 21.5 191 500-708 2-197 (352)
242 PRK14263 phosphate ABC transpo 100.0 1.5E-39 3.3E-44 340.4 20.4 198 499-708 8-216 (261)
243 PRK14275 phosphate ABC transpo 100.0 2E-39 4.4E-44 343.9 21.3 199 498-708 38-249 (286)
244 cd03233 ABC_PDR_domain1 The pl 100.0 2E-39 4.4E-44 326.9 20.1 180 499-708 3-188 (202)
245 PRK14272 phosphate ABC transpo 100.0 1.5E-39 3.2E-44 338.5 19.7 198 499-708 4-215 (252)
246 PRK14264 phosphate ABC transpo 100.0 2.1E-39 4.4E-44 346.9 21.1 197 498-708 44-267 (305)
247 PRK13536 nodulation factor exp 100.0 2.1E-39 4.5E-44 350.9 21.0 198 499-708 41-240 (340)
248 TIGR03740 galliderm_ABC gallid 100.0 2.5E-39 5.4E-44 330.9 20.3 190 500-708 1-192 (223)
249 cd03299 ABC_ModC_like Archeal 100.0 2.9E-39 6.3E-44 333.2 20.8 192 500-708 1-198 (235)
250 COG4619 ABC-type uncharacteriz 100.0 4.9E-40 1.1E-44 309.6 13.6 189 501-704 5-198 (223)
251 PRK11022 dppD dipeptide transp 100.0 2.3E-39 5.1E-44 349.1 20.5 202 499-708 3-222 (326)
252 TIGR01188 drrA daunorubicin re 100.0 1.5E-39 3.3E-44 347.5 18.8 185 508-708 2-192 (302)
253 cd03232 ABC_PDR_domain2 The pl 100.0 2.2E-39 4.7E-44 324.1 18.4 170 499-708 3-177 (192)
254 cd03213 ABCG_EPDR ABCG transpo 100.0 3E-39 6.6E-44 323.6 19.0 171 499-708 3-180 (194)
255 cd03297 ABC_ModC_molybdenum_tr 100.0 4.1E-39 8.9E-44 327.2 19.8 189 501-708 3-200 (214)
256 PRK09580 sufC cysteine desulfu 100.0 5.7E-39 1.2E-43 333.2 20.4 198 500-708 2-214 (248)
257 PRK11701 phnK phosphonate C-P 100.0 7E-39 1.5E-43 334.8 20.5 199 499-708 6-220 (258)
258 PRK09473 oppD oligopeptide tra 100.0 8.1E-39 1.8E-43 345.3 21.4 200 499-708 12-230 (330)
259 PRK09544 znuC high-affinity zi 100.0 1.2E-38 2.7E-43 331.7 21.8 183 499-708 4-189 (251)
260 PRK10419 nikE nickel transport 100.0 7.2E-39 1.6E-43 336.7 20.1 201 499-708 3-220 (268)
261 PRK15093 antimicrobial peptide 100.0 7.7E-39 1.7E-43 345.9 20.8 199 499-708 3-227 (330)
262 TIGR02142 modC_ABC molybdenum 100.0 9.3E-39 2E-43 348.4 21.1 188 504-708 4-200 (354)
263 TIGR03415 ABC_choXWV_ATP choli 100.0 8.1E-39 1.7E-43 349.6 20.0 192 503-708 28-233 (382)
264 COG1118 CysA ABC-type sulfate/ 100.0 4.1E-39 9E-44 330.1 16.5 194 499-708 2-206 (345)
265 PRK14246 phosphate ABC transpo 100.0 9.7E-39 2.1E-43 333.7 19.6 198 499-708 10-220 (257)
266 PRK10418 nikD nickel transport 100.0 1.6E-38 3.5E-43 331.4 20.6 193 499-708 4-209 (254)
267 COG1131 CcmA ABC-type multidru 100.0 2.2E-38 4.8E-43 336.4 20.6 196 499-708 4-205 (293)
268 cd03216 ABC_Carb_Monos_I This 100.0 2.9E-38 6.4E-43 307.9 19.8 149 500-708 1-150 (163)
269 cd03214 ABC_Iron-Siderophores_ 100.0 1.3E-38 2.8E-43 315.2 17.6 166 501-708 1-166 (180)
270 CHL00131 ycf16 sulfate ABC tra 100.0 3.3E-38 7.1E-43 328.4 21.2 196 499-708 7-220 (252)
271 TIGR02323 CP_lyasePhnK phospho 100.0 2.7E-38 5.8E-43 329.4 20.5 199 499-708 3-217 (253)
272 cd03217 ABC_FeS_Assembly ABC-t 100.0 5.1E-38 1.1E-42 316.2 20.1 169 500-708 1-173 (200)
273 PRK11288 araG L-arabinose tran 100.0 2.7E-38 5.8E-43 360.4 19.6 197 499-708 4-208 (501)
274 cd03267 ABC_NatA_like Similar 100.0 3.7E-38 8E-43 325.2 18.8 182 515-708 34-222 (236)
275 PRK15439 autoinducer 2 ABC tra 100.0 7.7E-38 1.7E-42 357.3 22.7 195 499-708 11-208 (510)
276 PRK09700 D-allose transporter 100.0 3.8E-38 8.1E-43 360.0 19.7 197 499-708 5-213 (510)
277 PRK13549 xylose transporter AT 100.0 3.6E-38 7.8E-43 359.8 19.5 197 499-708 5-211 (506)
278 TIGR01184 ntrCD nitrate transp 100.0 6.5E-38 1.4E-42 322.2 18.8 175 518-708 1-183 (230)
279 PRK10762 D-ribose transporter 100.0 5.9E-38 1.3E-42 357.6 19.3 197 499-708 4-209 (501)
280 PRK03695 vitamin B12-transport 100.0 1.5E-37 3.1E-42 323.2 20.5 189 500-708 1-201 (248)
281 PRK10938 putative molybdenum t 100.0 1.9E-37 4.2E-42 352.5 20.7 191 500-708 4-203 (490)
282 PRK10261 glutathione transport 100.0 2.5E-37 5.4E-42 360.4 21.5 199 499-708 313-532 (623)
283 PRK10982 galactose/methyl gala 100.0 2.8E-37 6.1E-42 351.2 21.3 194 502-708 1-202 (491)
284 TIGR02633 xylG D-xylose ABC tr 100.0 2.6E-37 5.6E-42 352.3 19.9 196 500-708 2-209 (500)
285 TIGR02770 nickel_nikD nickel i 100.0 4.6E-37 1E-41 315.8 17.7 180 517-708 1-194 (230)
286 PLN03211 ABC transporter G-25; 100.0 1.5E-36 3.2E-41 354.4 22.4 182 515-708 81-275 (659)
287 PRK15134 microcin C ABC transp 100.0 1E-36 2.2E-41 349.6 20.4 199 499-708 5-225 (529)
288 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 9.5E-37 2E-41 312.3 17.9 183 500-708 23-210 (224)
289 PRK10261 glutathione transport 100.0 1.4E-36 3.1E-41 354.1 21.5 200 499-708 12-237 (623)
290 TIGR03771 anch_rpt_ABC anchore 100.0 1E-36 2.2E-41 311.8 17.4 169 523-708 1-181 (223)
291 PRK13549 xylose transporter AT 100.0 9E-37 2E-41 348.3 18.7 200 499-708 259-473 (506)
292 PRK09700 D-allose transporter 100.0 9.2E-37 2E-41 348.6 18.6 195 499-708 265-477 (510)
293 PRK15134 microcin C ABC transp 100.0 1.1E-36 2.4E-41 349.4 19.0 198 499-708 275-494 (529)
294 TIGR03269 met_CoM_red_A2 methy 100.0 1.7E-36 3.7E-41 347.2 19.4 202 499-708 279-496 (520)
295 TIGR03269 met_CoM_red_A2 methy 100.0 1.7E-36 3.6E-41 347.2 19.2 195 500-708 1-237 (520)
296 PRK10535 macrolide transporter 100.0 4.7E-36 1E-40 351.0 22.8 197 499-708 4-211 (648)
297 TIGR02633 xylG D-xylose ABC tr 100.0 2.1E-36 4.6E-41 344.8 18.4 205 499-708 257-471 (500)
298 COG4181 Predicted ABC-type tra 100.0 3.6E-36 7.8E-41 284.3 16.6 196 499-705 6-212 (228)
299 TIGR00955 3a01204 The Eye Pigm 100.0 1.3E-36 2.9E-41 354.0 16.4 199 498-708 16-235 (617)
300 COG1123 ATPase components of v 100.0 4.8E-36 1E-40 332.9 19.1 199 499-708 280-498 (539)
301 cd03237 ABC_RNaseL_inhibitor_d 100.0 5.1E-36 1.1E-40 311.0 18.1 177 507-708 1-184 (246)
302 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.5E-36 5.5E-41 314.8 15.6 191 503-708 4-207 (255)
303 COG1129 MglA ABC-type sugar tr 100.0 2E-35 4.4E-40 326.0 21.0 198 499-709 8-214 (500)
304 COG4555 NatA ABC-type Na+ tran 100.0 8.9E-36 1.9E-40 288.8 14.4 194 500-708 2-201 (245)
305 PRK13545 tagH teichoic acids e 100.0 3.2E-35 6.9E-40 327.6 21.0 185 499-708 21-211 (549)
306 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3.3E-35 7.2E-40 280.6 17.8 135 500-708 1-135 (144)
307 PRK10762 D-ribose transporter 100.0 1.6E-35 3.5E-40 337.6 17.7 192 499-708 257-463 (501)
308 TIGR01257 rim_protein retinal- 100.0 4.4E-35 9.5E-40 367.0 22.4 196 498-708 927-1128(2272)
309 COG4608 AppF ABC-type oligopep 100.0 2E-35 4.2E-40 301.9 15.5 168 499-708 4-178 (268)
310 PRK13546 teichoic acids export 100.0 6.2E-35 1.3E-39 305.9 19.8 185 499-708 4-211 (264)
311 TIGR00956 3a01205 Pleiotropic 100.0 3E-35 6.5E-40 367.3 20.5 196 499-708 759-971 (1394)
312 PRK11288 araG L-arabinose tran 100.0 2.1E-35 4.5E-40 336.7 17.3 193 499-708 257-464 (501)
313 COG1123 ATPase components of v 100.0 4.1E-35 8.9E-40 325.5 18.8 200 499-709 5-224 (539)
314 COG4525 TauB ABC-type taurine 100.0 1.7E-35 3.8E-40 285.1 13.7 189 500-705 4-198 (259)
315 COG0444 DppD ABC-type dipeptid 100.0 3.9E-35 8.5E-40 305.5 17.0 198 500-708 2-222 (316)
316 PRK11819 putative ABC transpor 100.0 4.4E-35 9.5E-40 337.8 19.1 188 499-708 6-228 (556)
317 PRK15064 ABC transporter ATP-b 100.0 6.2E-35 1.3E-39 335.0 19.1 187 500-708 2-220 (530)
318 COG4175 ProV ABC-type proline/ 100.0 3.1E-35 6.7E-40 301.8 14.6 195 499-704 4-229 (386)
319 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.5E-34 3.2E-39 333.3 21.3 188 499-708 4-226 (552)
320 PRK15064 ABC transporter ATP-b 100.0 1.4E-34 3.1E-39 332.0 21.0 181 499-708 319-503 (530)
321 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.5E-34 5.5E-39 278.0 19.2 148 501-708 1-148 (157)
322 TIGR01257 rim_protein retinal- 100.0 1.8E-34 4E-39 361.5 22.1 196 499-708 1937-2138(2272)
323 PRK10938 putative molybdenum t 100.0 9.4E-35 2E-39 330.5 17.7 196 499-708 260-471 (490)
324 COG0410 LivF ABC-type branched 100.0 4.2E-34 9E-39 284.4 19.6 199 499-708 3-205 (237)
325 COG3845 ABC-type uncharacteriz 100.0 2.7E-34 5.8E-39 311.1 19.7 201 499-708 4-208 (501)
326 PRK10982 galactose/methyl gala 100.0 1.1E-34 2.3E-39 330.1 17.4 196 499-708 250-459 (491)
327 PRK15439 autoinducer 2 ABC tra 100.0 1.9E-34 4.2E-39 329.3 17.7 192 499-708 268-471 (510)
328 COG4559 ABC-type hemin transpo 100.0 4.7E-34 1E-38 278.9 17.5 194 500-708 2-209 (259)
329 cd03222 ABC_RNaseL_inhibitor T 100.0 5.7E-34 1.2E-38 280.7 16.9 137 503-708 4-140 (177)
330 TIGR01187 potA spermidine/putr 100.0 4.6E-34 9.9E-39 308.1 15.6 163 533-708 1-169 (325)
331 COG4598 HisP ABC-type histidin 100.0 3.6E-34 7.8E-39 272.5 12.3 190 499-703 6-215 (256)
332 COG0411 LivG ABC-type branched 100.0 5.4E-34 1.2E-38 285.7 14.0 197 500-708 5-218 (250)
333 PLN03140 ABC transporter G fam 100.0 2.4E-33 5.2E-38 349.4 22.6 198 498-708 866-1088(1470)
334 PRK13409 putative ATPase RIL; 100.0 2.4E-33 5.2E-38 323.7 20.5 181 499-708 340-522 (590)
335 PRK15177 Vi polysaccharide exp 100.0 1.8E-33 3.8E-38 286.0 16.6 167 517-708 2-171 (213)
336 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.2E-33 6.9E-38 322.2 20.6 182 499-708 322-508 (552)
337 PRK11819 putative ABC transpor 100.0 3.7E-33 8.1E-38 321.8 20.7 182 499-708 324-510 (556)
338 PRK11147 ABC transporter ATPas 100.0 5.5E-33 1.2E-37 324.8 20.4 181 499-708 319-505 (635)
339 COG4148 ModC ABC-type molybdat 100.0 2.4E-33 5.2E-38 283.5 14.4 178 519-708 15-197 (352)
340 PLN03073 ABC transporter F fam 100.0 1.1E-32 2.3E-37 323.8 20.3 181 499-708 508-692 (718)
341 PF00005 ABC_tran: ABC transpo 100.0 2.8E-33 6.1E-38 263.7 11.8 134 518-666 1-137 (137)
342 PRK10636 putative ABC transpor 100.0 1.4E-32 3.1E-37 321.0 19.8 180 499-708 312-495 (638)
343 COG1119 ModF ABC-type molybden 100.0 2.6E-32 5.6E-37 273.5 18.1 199 498-708 30-241 (257)
344 PRK13409 putative ATPase RIL; 100.0 8.4E-33 1.8E-37 319.1 13.7 186 503-708 77-279 (590)
345 COG4161 ArtP ABC-type arginine 100.0 2.5E-32 5.5E-37 255.7 14.2 192 499-705 2-206 (242)
346 cd03238 ABC_UvrA The excision 100.0 7.9E-32 1.7E-36 265.3 16.9 146 514-708 7-156 (176)
347 COG4136 ABC-type uncharacteriz 100.0 5.8E-32 1.3E-36 250.6 14.5 188 499-703 2-198 (213)
348 COG4172 ABC-type uncharacteriz 100.0 1.5E-31 3.2E-36 281.8 19.4 198 498-708 275-495 (534)
349 COG1137 YhbG ABC-type (unclass 100.0 9.5E-33 2.1E-37 267.5 9.6 195 498-702 3-201 (243)
350 PRK10636 putative ABC transpor 100.0 9E-32 1.9E-36 314.3 19.4 187 500-708 2-214 (638)
351 TIGR00956 3a01205 Pleiotropic 100.0 1.2E-31 2.5E-36 335.2 18.6 184 515-708 74-279 (1394)
352 KOG0064 Peroxisomal long-chain 100.0 3.9E-28 8.6E-33 262.2 41.7 319 361-704 304-673 (728)
353 COG1101 PhnK ABC-type uncharac 100.0 2.1E-31 4.6E-36 260.8 12.7 185 514-702 18-211 (263)
354 PRK11147 ABC transporter ATPas 100.0 1.3E-30 2.9E-35 304.8 21.9 185 500-708 4-221 (635)
355 KOG0061 Transporter, ABC super 100.0 1.9E-30 4E-35 300.4 17.8 195 498-703 24-233 (613)
356 PLN03140 ABC transporter G fam 100.0 7E-31 1.5E-35 327.5 14.8 189 515-708 178-406 (1470)
357 COG4604 CeuD ABC-type enteroch 100.0 5.9E-31 1.3E-35 254.4 10.8 195 500-708 2-204 (252)
358 COG0488 Uup ATPase components 100.0 7.5E-30 1.6E-34 288.3 18.7 181 499-704 3-214 (530)
359 COG4133 CcmA ABC-type transpor 100.0 2.6E-30 5.5E-35 249.0 12.1 188 500-703 3-193 (209)
360 PLN03073 ABC transporter F fam 100.0 1E-29 2.2E-34 298.7 16.5 200 498-708 176-409 (718)
361 COG4172 ABC-type uncharacteriz 100.0 1.9E-29 4.1E-34 265.9 15.0 199 499-708 6-226 (534)
362 COG4152 ABC-type uncharacteriz 100.0 5.9E-29 1.3E-33 247.7 14.6 192 499-708 2-198 (300)
363 COG0488 Uup ATPase components 100.0 1.4E-27 3.1E-32 269.9 22.8 181 498-706 320-502 (530)
364 cd03278 ABC_SMC_barmotin Barmo 100.0 2.5E-28 5.4E-33 245.2 12.8 157 519-708 14-183 (197)
365 COG0396 sufC Cysteine desulfur 100.0 2.7E-27 5.8E-32 234.9 18.1 193 499-703 3-207 (251)
366 PF00664 ABC_membrane: ABC tra 99.9 4.2E-24 9.1E-29 218.8 39.6 270 185-454 2-275 (275)
367 COG4167 SapF ABC-type antimicr 99.9 2E-27 4.3E-32 227.1 12.8 194 500-705 5-215 (267)
368 COG4674 Uncharacterized ABC-ty 99.9 2E-27 4.3E-32 229.6 12.2 194 499-708 5-214 (249)
369 cd03279 ABC_sbcCD SbcCD and ot 99.9 3.7E-27 8E-32 239.6 12.2 183 499-709 5-202 (213)
370 cd03270 ABC_UvrA_I The excisio 99.9 5.5E-27 1.2E-31 240.5 11.7 177 514-708 7-206 (226)
371 COG4107 PhnK ABC-type phosphon 99.9 2.6E-26 5.7E-31 217.8 15.2 196 499-708 6-220 (258)
372 COG4778 PhnL ABC-type phosphon 99.9 1.9E-26 4.2E-31 218.1 10.9 193 499-702 4-214 (235)
373 cd03271 ABC_UvrA_II The excisi 99.9 3E-26 6.5E-31 238.8 11.7 178 516-708 9-239 (261)
374 COG1134 TagH ABC-type polysacc 99.9 5.1E-26 1.1E-30 228.6 12.8 173 514-709 39-216 (249)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.9 3.3E-26 7.2E-31 236.8 11.7 184 499-708 3-228 (243)
376 cd03273 ABC_SMC2_euk Eukaryoti 99.9 9E-26 2E-30 235.1 11.7 174 528-708 25-236 (251)
377 KOG0927 Predicted transporter 99.9 2.3E-25 5E-30 242.8 10.7 184 498-705 388-571 (614)
378 COG4586 ABC-type uncharacteriz 99.9 5.4E-25 1.2E-29 222.8 11.3 184 515-708 37-225 (325)
379 cd03274 ABC_SMC4_euk Eukaryoti 99.9 4.5E-25 9.7E-30 224.1 6.6 178 499-708 5-197 (212)
380 cd03240 ABC_Rad50 The catalyti 99.9 4.8E-24 1E-28 215.4 12.1 155 522-705 17-188 (204)
381 KOG0059 Lipid exporter ABCA1 a 99.9 1E-23 2.2E-28 254.1 15.8 197 498-708 563-766 (885)
382 KOG0065 Pleiotropic drug resis 99.9 8.2E-23 1.8E-27 242.2 12.6 192 500-704 788-994 (1391)
383 cd03275 ABC_SMC1_euk Eukaryoti 99.9 5.9E-23 1.3E-27 213.5 10.0 176 529-708 23-226 (247)
384 COG1129 MglA ABC-type sugar tr 99.9 1.9E-21 4E-26 215.6 17.3 198 499-708 263-469 (500)
385 PRK00635 excinuclease ABC subu 99.9 1.1E-21 2.4E-26 243.5 17.2 189 499-708 600-879 (1809)
386 COG4138 BtuD ABC-type cobalami 99.9 1.3E-22 2.9E-27 193.0 6.4 182 500-703 4-195 (248)
387 PRK00349 uvrA excinuclease ABC 99.9 5E-21 1.1E-25 229.0 16.2 197 499-708 614-900 (943)
388 KOG0066 eIF2-interacting prote 99.8 3.2E-21 6.9E-26 204.5 12.1 176 499-703 586-764 (807)
389 KOG0062 ATPase component of AB 99.8 7E-21 1.5E-25 206.9 13.0 183 498-708 361-547 (582)
390 KOG0062 ATPase component of AB 99.8 3.9E-21 8.5E-26 208.8 10.3 175 497-701 78-256 (582)
391 cd03276 ABC_SMC6_euk Eukaryoti 99.8 1.5E-20 3.3E-25 189.0 13.2 163 518-705 12-181 (198)
392 COG3845 ABC-type uncharacteriz 99.8 3.4E-20 7.4E-25 201.8 15.6 197 499-709 257-472 (501)
393 TIGR00630 uvra excinuclease AB 99.8 1E-19 2.2E-24 217.4 17.6 72 633-708 822-898 (924)
394 KOG0927 Predicted transporter 99.8 5.3E-20 1.1E-24 201.1 13.1 196 497-708 73-287 (614)
395 cd03239 ABC_SMC_head The struc 99.8 3.5E-19 7.6E-24 176.1 13.3 79 622-708 83-165 (178)
396 COG2401 ABC-type ATPase fused 99.8 2.4E-19 5.3E-24 190.0 12.1 168 515-703 396-571 (593)
397 COG1245 Predicted ATPase, RNas 99.8 5.8E-19 1.3E-23 189.3 13.0 172 504-704 340-520 (591)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.8 1.4E-18 3.1E-23 176.7 10.5 175 519-709 15-201 (213)
399 KOG2355 Predicted ABC-type tra 99.8 8.6E-18 1.9E-22 164.0 13.3 185 498-701 12-209 (291)
400 cd03241 ABC_RecN RecN ATPase i 99.8 5.6E-18 1.2E-22 179.1 13.1 67 637-708 170-240 (276)
401 cd03280 ABC_MutS2 MutS2 homolo 99.7 1.6E-17 3.6E-22 167.2 10.8 127 518-702 17-153 (200)
402 cd00820 PEPCK_HprK Phosphoenol 99.7 7E-18 1.5E-22 151.7 6.2 76 515-598 2-77 (107)
403 COG4170 SapD ABC-type antimicr 99.7 6.2E-17 1.3E-21 158.4 10.5 198 501-708 5-227 (330)
404 cd03283 ABC_MutS-like MutS-lik 99.7 2.7E-17 5.8E-22 165.6 8.0 138 515-705 14-153 (199)
405 cd03227 ABC_Class2 ABC-type Cl 99.7 1.7E-16 3.8E-21 154.5 13.0 127 522-705 15-146 (162)
406 COG1245 Predicted ATPase, RNas 99.7 5.6E-17 1.2E-21 174.3 9.5 180 504-707 79-280 (591)
407 cd01128 rho_factor Transcripti 99.7 1.8E-16 3.9E-21 164.4 9.7 163 523-704 11-198 (249)
408 KOG0065 Pleiotropic drug resis 99.7 2.2E-16 4.7E-21 188.2 10.3 182 515-701 128-322 (1391)
409 TIGR00606 rad50 rad50. This fa 99.6 7.5E-16 1.6E-20 193.7 12.2 115 587-706 1153-1276(1311)
410 cd03242 ABC_RecF RecF is a rec 99.6 2E-15 4.4E-20 159.1 13.3 165 518-683 12-238 (270)
411 cd03285 ABC_MSH2_euk MutS2 hom 99.6 1.8E-15 3.8E-20 155.0 10.2 137 515-708 17-160 (222)
412 PRK00635 excinuclease ABC subu 99.6 5.7E-15 1.2E-19 184.4 16.2 177 517-708 1505-1769(1809)
413 COG0178 UvrA Excinuclease ATPa 99.6 8.4E-15 1.8E-19 167.1 12.3 71 634-708 817-892 (935)
414 cd03243 ABC_MutS_homologs The 99.6 9.7E-15 2.1E-19 147.3 10.8 134 520-705 21-156 (202)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.5 2.9E-14 6.3E-19 144.1 10.4 140 515-706 16-157 (204)
416 KOG0066 eIF2-interacting prote 99.5 3.6E-14 7.9E-19 151.4 6.3 188 499-704 264-473 (807)
417 TIGR02858 spore_III_AA stage I 99.5 2.9E-13 6.2E-18 142.1 11.9 119 529-702 112-231 (270)
418 PTZ00132 GTP-binding nuclear p 99.4 2.2E-13 4.8E-18 138.4 7.4 144 530-684 11-204 (215)
419 PF02463 SMC_N: RecF/RecN/SMC 99.4 3.3E-13 7.1E-18 137.6 8.5 66 637-706 136-205 (220)
420 TIGR00630 uvra excinuclease AB 99.4 6.4E-13 1.4E-17 159.6 12.0 84 620-708 469-556 (924)
421 PRK00064 recF recombination pr 99.4 1.6E-12 3.4E-17 142.6 14.0 62 637-704 273-343 (361)
422 PRK00349 uvrA excinuclease ABC 99.4 8.3E-13 1.8E-17 158.9 11.9 69 636-708 488-558 (943)
423 cd03284 ABC_MutS1 MutS1 homolo 99.4 1.2E-12 2.6E-17 133.5 10.0 129 515-703 18-156 (216)
424 TIGR01069 mutS2 MutS2 family p 99.4 9.8E-12 2.1E-16 147.8 17.2 154 499-706 295-451 (771)
425 cd03281 ABC_MSH5_euk MutS5 hom 99.3 1.1E-11 2.4E-16 126.2 12.3 139 516-706 17-160 (213)
426 KOG0063 RNAse L inhibitor, ABC 99.3 9.7E-12 2.1E-16 133.2 11.4 169 506-701 342-518 (592)
427 PRK10733 hflB ATP-dependent me 99.3 3.1E-13 6.7E-18 158.4 -0.1 197 322-553 5-210 (644)
428 cd03287 ABC_MSH3_euk MutS3 hom 99.3 7E-12 1.5E-16 128.2 8.7 137 515-705 18-159 (222)
429 smart00534 MUTSac ATPase domai 99.2 2.1E-11 4.6E-16 121.4 8.1 63 636-703 60-125 (185)
430 TIGR00611 recf recF protein. A 99.2 2.9E-10 6.3E-15 124.8 15.6 61 637-703 275-344 (365)
431 PHA02562 46 endonuclease subun 99.2 2.2E-11 4.7E-16 141.3 6.3 91 609-705 433-542 (562)
432 TIGR00767 rho transcription te 99.2 3E-10 6.6E-15 123.8 13.8 81 468-555 104-195 (415)
433 PRK07721 fliI flagellum-specif 99.1 4.5E-10 9.9E-15 125.4 14.8 158 515-702 146-318 (438)
434 TIGR03238 dnd_assoc_3 dnd syst 99.1 2.9E-11 6.3E-16 133.7 4.3 68 515-585 19-87 (504)
435 KOG0063 RNAse L inhibitor, ABC 99.1 1.2E-10 2.6E-15 125.0 8.8 162 526-705 98-278 (592)
436 PRK00409 recombination and DNA 99.1 9.2E-10 2E-14 131.4 15.2 69 636-708 389-458 (782)
437 PRK08533 flagellar accessory p 99.1 1.5E-09 3.2E-14 111.9 13.6 147 499-701 7-163 (230)
438 PRK11098 microcin B17 transpor 99.0 2.5E-06 5.3E-11 94.4 38.3 250 216-480 133-395 (409)
439 PRK14079 recF recombination pr 99.0 2.4E-09 5.2E-14 117.1 13.7 59 637-701 263-330 (349)
440 TIGR00634 recN DNA repair prot 99.0 5.3E-10 1.2E-14 129.7 8.5 67 637-708 440-510 (563)
441 PRK10869 recombination and rep 99.0 5.8E-10 1.2E-14 128.7 8.6 64 637-704 430-497 (553)
442 PRK12369 putative transporter; 99.0 7.7E-06 1.7E-10 88.5 38.9 225 246-480 84-321 (326)
443 PF06472 ABC_membrane_2: ABC t 98.9 5.9E-06 1.3E-10 87.9 35.6 215 196-414 41-263 (281)
444 cd01120 RecA-like_NTPases RecA 98.9 3.8E-09 8.2E-14 100.9 9.8 129 530-703 1-140 (165)
445 cd03286 ABC_MSH6_euk MutS6 hom 98.9 3.8E-09 8.3E-14 107.8 9.7 140 515-706 17-159 (218)
446 PRK06002 fliI flagellum-specif 98.9 4.5E-09 9.7E-14 116.8 10.7 127 497-645 137-271 (450)
447 PRK06793 fliI flagellum-specif 98.9 2.6E-09 5.6E-14 118.5 8.7 151 498-701 129-287 (432)
448 PRK00300 gmk guanylate kinase; 98.9 8.4E-10 1.8E-14 111.2 3.8 78 526-613 3-92 (205)
449 TIGR02788 VirB11 P-type DNA tr 98.9 8.9E-09 1.9E-13 110.8 11.8 119 521-702 137-255 (308)
450 PF13304 AAA_21: AAA domain; P 98.9 3.5E-09 7.7E-14 107.4 7.5 64 637-703 236-302 (303)
451 smart00382 AAA ATPases associa 98.9 5.3E-08 1.1E-12 89.5 14.4 117 527-699 1-125 (148)
452 cd01124 KaiC KaiC is a circadi 98.8 9.5E-09 2.1E-13 101.6 9.4 64 636-702 70-142 (187)
453 PRK13695 putative NTPase; Prov 98.8 5.1E-09 1.1E-13 103.1 6.1 58 637-701 78-137 (174)
454 PRK13830 conjugal transfer pro 98.8 2.6E-08 5.6E-13 120.2 13.3 51 652-705 649-700 (818)
455 cd01131 PilT Pilus retraction 98.8 1.6E-08 3.4E-13 101.9 9.5 109 530-703 3-112 (198)
456 TIGR00618 sbcc exonuclease Sbc 98.8 8.4E-09 1.8E-13 128.0 8.7 70 636-708 949-1028(1042)
457 PF13748 ABC_membrane_3: ABC t 98.8 1.8E-05 3.9E-10 80.4 30.5 168 176-354 4-171 (237)
458 PRK01156 chromosome segregatio 98.8 1.1E-08 2.4E-13 125.2 8.9 72 636-709 800-878 (895)
459 TIGR02168 SMC_prok_B chromosom 98.8 9.3E-09 2E-13 128.9 7.6 67 637-708 1089-1159(1179)
460 PRK03918 chromosome segregatio 98.7 1.7E-08 3.7E-13 123.3 8.7 68 637-708 788-861 (880)
461 PRK10246 exonuclease subunit S 98.7 1.8E-08 4E-13 124.6 8.1 64 636-702 948-1019(1047)
462 PRK06067 flagellar accessory p 98.7 6.7E-08 1.4E-12 99.7 11.0 62 637-701 100-166 (234)
463 PRK13891 conjugal transfer pro 98.7 7.8E-07 1.7E-11 108.0 19.3 56 648-706 680-736 (852)
464 PRK01889 GTPase RsgA; Reviewed 98.6 1.5E-08 3.3E-13 111.0 3.9 133 517-655 184-321 (356)
465 PRK06995 flhF flagellar biosyn 98.6 4.4E-08 9.6E-13 110.3 6.6 148 521-701 249-403 (484)
466 COG0178 UvrA Excinuclease ATPa 98.6 2.7E-07 5.9E-12 106.6 11.2 133 553-706 410-549 (935)
467 PRK08149 ATP synthase SpaL; Va 98.6 1.3E-07 2.9E-12 105.0 8.3 101 515-634 139-246 (428)
468 cd01130 VirB11-like_ATPase Typ 98.6 7.1E-08 1.5E-12 96.1 5.3 80 516-598 13-95 (186)
469 PRK07196 fliI flagellum-specif 98.6 4.5E-08 9.7E-13 108.9 4.2 81 515-596 143-233 (434)
470 cd01125 repA Hexameric Replica 98.5 6.9E-08 1.5E-12 100.0 5.3 48 651-701 107-160 (239)
471 TIGR02169 SMC_prok_A chromosom 98.5 1.3E-07 2.8E-12 118.7 7.2 64 637-704 1074-1141(1164)
472 TIGR02524 dot_icm_DotB Dot/Icm 98.5 1.4E-07 3E-12 103.4 6.2 88 526-616 132-234 (358)
473 PRK02224 chromosome segregatio 98.5 2.7E-07 5.8E-12 113.0 7.8 69 636-708 780-861 (880)
474 COG3910 Predicted ATPase [Gene 98.4 1.5E-06 3.2E-11 85.0 11.1 61 637-701 129-189 (233)
475 PF05992 SbmA_BacA: SbmA/BacA- 98.4 0.0024 5.1E-08 67.8 35.5 219 248-477 79-310 (315)
476 PRK10078 ribose 1,5-bisphospho 98.4 2.5E-07 5.5E-12 92.1 5.8 55 528-585 2-56 (186)
477 PRK09825 idnK D-gluconate kina 98.4 1.9E-07 4.1E-12 92.4 3.8 53 527-585 2-55 (176)
478 cd02023 UMPK Uridine monophosp 98.4 3E-07 6.4E-12 92.3 4.8 108 530-670 1-113 (198)
479 TIGR00235 udk uridine kinase. 98.4 4E-07 8.7E-12 92.2 5.2 44 526-590 4-47 (207)
480 TIGR02655 circ_KaiC circadian 98.4 5.2E-08 1.1E-12 111.2 -1.5 145 524-701 17-168 (484)
481 TIGR01420 pilT_fam pilus retra 98.3 2.5E-06 5.4E-11 93.3 11.1 114 525-703 119-233 (343)
482 TIGR03263 guanyl_kin guanylate 98.3 3.5E-07 7.6E-12 90.1 3.7 77 528-614 1-89 (180)
483 cd01123 Rad51_DMC1_radA Rad51_ 98.3 1.2E-06 2.6E-11 90.1 7.7 136 524-699 15-169 (235)
484 TIGR02322 phosphon_PhnN phosph 98.3 1E-06 2.2E-11 86.8 6.8 63 528-591 1-79 (179)
485 PLN02796 D-glycerate 3-kinase 98.3 2.2E-07 4.7E-12 100.2 2.1 62 515-576 79-151 (347)
486 PRK13898 type IV secretion sys 98.3 1.3E-05 2.9E-10 97.0 17.5 53 651-706 638-691 (800)
487 TIGR02903 spore_lon_C ATP-depe 98.3 2E-06 4.4E-11 100.7 10.0 107 528-682 175-291 (615)
488 PRK05480 uridine/cytidine kina 98.3 1.4E-06 3.1E-11 88.2 7.1 70 526-616 4-78 (209)
489 cd00071 GMPK Guanosine monopho 98.3 4.3E-07 9.4E-12 86.1 3.0 72 531-612 2-86 (137)
490 PTZ00035 Rad51 protein; Provis 98.2 4.3E-06 9.4E-11 91.0 9.9 81 524-612 114-201 (337)
491 TIGR03497 FliI_clade2 flagella 98.2 3.2E-06 7E-11 94.1 8.7 100 515-634 125-232 (413)
492 PRK06315 type III secretion sy 98.2 1.1E-06 2.4E-11 98.1 4.5 102 515-618 152-276 (442)
493 PRK15494 era GTPase Era; Provi 98.2 9.9E-07 2.1E-11 96.2 3.9 57 494-552 13-76 (339)
494 TIGR01026 fliI_yscN ATPase Fli 98.2 1.3E-05 2.7E-10 90.1 12.6 161 515-700 151-321 (440)
495 PRK13873 conjugal transfer ATP 98.2 1.8E-05 4E-10 95.9 14.9 54 650-706 630-684 (811)
496 PLN03210 Resistant to P. syrin 98.2 4.8E-06 1E-10 104.7 9.9 45 520-564 199-244 (1153)
497 TIGR02680 conserved hypothetic 98.2 2.6E-06 5.7E-11 107.9 7.5 60 636-701 1246-1317(1353)
498 cd01136 ATPase_flagellum-secre 98.1 3.8E-06 8.3E-11 90.5 7.3 106 515-635 57-165 (326)
499 cd00009 AAA The AAA+ (ATPases 98.1 1.3E-05 2.7E-10 74.4 9.6 58 643-701 72-131 (151)
500 cd01393 recA_like RecA is a b 98.1 8.7E-06 1.9E-10 83.2 9.2 80 524-611 15-101 (226)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-114 Score=970.15 Aligned_cols=532 Identities=43% Similarity=0.676 Sum_probs=502.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 168 RALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SEI-AVFHRNVRLLILLCVTSGICSGLRGCCF 245 (709)
Q Consensus 168 ~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~-~d~-~~~~~~~~ll~~l~~~~~~~~~lr~~~~ 245 (709)
..+++++++.+++++.+..++++.+++++..+++|++++.+++.... .|. ..+......+..+.++.+++.++|.+++
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999888765433 222 2344555566777778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005203 246 GIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGL 325 (709)
Q Consensus 246 ~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lal 325 (709)
.+.+.++..++|..+|+++++++++|||+.++||++||+++|++.+.+.++..+...+++.++.++.+++|+++||.|++
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltl 292 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTL 292 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 326 CTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYG 405 (709)
Q Consensus 326 v~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~ 405 (709)
++++.+|+.+++..+|+++.++..++.+++.|+.++...|.+.+++|||+|+.|++|.+||.++.++..+.+.|....++
T Consensus 293 v~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~ 372 (716)
T KOG0058|consen 293 VTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYG 372 (716)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 005203 406 FWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQ 485 (709)
Q Consensus 406 ~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~ 485 (709)
.+.+..++..+...+.++++|+++|.+|+||.|.|++|++|..++..++..++..+.++|+..++.+|++|++|.+|..+
T Consensus 373 ~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~ 452 (716)
T KOG0058|consen 373 IFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIP 452 (716)
T ss_pred HhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred ccccccccc-CCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE
Q 005203 486 FMSKGKKLQ-RLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF 564 (709)
Q Consensus 486 ~~~~~~~~~-~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~ 564 (709)
.. +...+ ...|.|+|+||+|+||.+++.+||+|+||+|+|||+||+|||||+||||+++||++||+|++|+|++||+
T Consensus 453 ~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~ 530 (716)
T KOG0058|consen 453 LT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGV 530 (716)
T ss_pred CC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCe
Confidence 32 43333 4678999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCC--CCChHH
Q 005203 565 PIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD--LLSGGQ 642 (709)
Q Consensus 565 di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~--~LSGGQ 642 (709)
||+++++.+||++||+|.|||.||+|||+|||.||.+ ++++|+|+.||++|++||||.++|+||||.|||+ +|||||
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 9999999999999999999999999999999999987 9999999999999999999999999999999994 999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhh
Q 005203 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALS 706 (709)
Q Consensus 643 kQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~ 706 (709)
||||||||||+|||+||||||||||||+|+|..|+++|.+..++ +|||+||||||||..+
T Consensus 610 KQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~----rTVlvIAHRLSTV~~A 669 (716)
T KOG0058|consen 610 KQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQG----RTVLVIAHRLSTVRHA 669 (716)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC----CeEEEEehhhhHhhhc
Confidence 99999999999999999999999999999999999999988754 9999999999999764
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.3e-113 Score=991.95 Aligned_cols=583 Identities=29% Similarity=0.432 Sum_probs=530.3
Q ss_pred cccccccceeeecCcEEEeCCCCCCCCcceeechhHHHHHHHHHHHHhcCCCCCcccCChHHHHhhcCcchHHHHHHHHH
Q 005203 95 RCCHFHPLKSSSINGFSVQNDSLEHFDGEVNVDFNEKIRRWIRFIQSILPGGSWWSFDDDVEVKIMAKPVTLWRALGKMW 174 (709)
Q Consensus 95 ~~nhfvvl~~v~~~~~~i~dp~~~~a~g~r~~~~~e~~~~ftg~alel~p~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (709)
|.+||||++++++++++|.|| +.|.++++.+|+.+++||+++.+.|+.. ++..+.++. .+.+++
T Consensus 83 ~~~h~vVl~~~~~~~~~v~dp----~~g~~~l~~~e~~~~~tg~~l~l~~~~~--------~~~~~~~~~----~~~~f~ 146 (709)
T COG2274 83 NGNHFVVLYKIDKNKVVVLDP----AKGIRRLSLEEFEKLWTGIALLLAPTAS--------RKFKDIPPF----GLSWFI 146 (709)
T ss_pred cCCcEEEEEEecCCeEEEEeC----CCCcEEcCHHHHHHhhheeEEEEecccc--------ccccccccc----chHhHH
Confidence 678999999999999999999 9999999999999999999999999863 111122222 245677
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 005203 175 DLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLC-------VTSGICSGLRGCCFGI 247 (709)
Q Consensus 175 ~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~-------~~~~~~~~lr~~~~~~ 247 (709)
..+.++++.+..+++.+++..+++++.|++.+.++ |.+++..+...|.+++ +...++.++|+|...+
T Consensus 147 ~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~vi------D~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~ 220 (709)
T COG2274 147 PLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVI------DKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAH 220 (709)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999988885 5555555554444333 3355678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005203 248 ANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCT 327 (709)
Q Consensus 248 ~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~ 327 (709)
++.++..++..++|+|++++|++||++|++||+++|+. +.++|+++++..+..++.|.+++++.+++|++|||+|++++
T Consensus 221 ~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~ 299 (709)
T COG2274 221 LGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIV 299 (709)
T ss_pred HHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999996 67999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 328 LMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFW 407 (709)
Q Consensus 328 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 407 (709)
++.+|+++++..++.+..++..++..+..++.++...|++.|++|||+.+.|+++..+|++...++.+.+.+..+.....
T Consensus 300 l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 379 (709)
T COG2274 300 LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALIL 379 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999997777777666666655558999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 005203 408 NLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFM 487 (709)
Q Consensus 408 ~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~ 487 (709)
+....++..+..++++|+|+++|++|++|+|+++||.++.+++..|+..+++.+.++++...+.+|+.|+++.|+|.+..
T Consensus 380 ~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~ 459 (709)
T COG2274 380 NTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986522
Q ss_pred cccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC
Q 005203 488 SKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK 567 (709)
Q Consensus 488 ~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~ 567 (709)
......++..|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+|+|+|+|+|++|+|++||+|++
T Consensus 460 ~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 460 KTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred cccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 2123445567899999999999875 478999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHH
Q 005203 568 EVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQR 645 (709)
Q Consensus 568 ~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQR 645 (709)
++++.++|++||||+||++||+|||+|||++++| ++++|++++||+.||+||||++||+||||.||| .+||||||||
T Consensus 539 ~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p-~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQr 617 (709)
T COG2274 539 DIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP-EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR 617 (709)
T ss_pred hcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHH
Confidence 9999999999999999999999999999999987 999999999999999999999999999999999 4999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhh
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALS 706 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~ 706 (709)
|+|||||++||+||||||||||||++||+.|.++|.++.. ++|+|+||||++|++.+
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~----~~T~I~IaHRl~ti~~a 674 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ----GRTVIIIAHRLSTIRSA 674 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc----CCeEEEEEccchHhhhc
Confidence 9999999999999999999999999999999999999875 59999999999998653
No 3
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.7e-101 Score=913.43 Aligned_cols=592 Identities=23% Similarity=0.307 Sum_probs=517.0
Q ss_pred CcccccccceeeecCcEEEeCCCCCCCCcceeechhHHHHHHHHHHHHhcCCCCCcccCChHHHHhhcCcchHHHHHHHH
Q 005203 94 KRCCHFHPLKSSSINGFSVQNDSLEHFDGEVNVDFNEKIRRWIRFIQSILPGGSWWSFDDDVEVKIMAKPVTLWRALGKM 173 (709)
Q Consensus 94 ~~~nhfvvl~~v~~~~~~i~dp~~~~a~g~r~~~~~e~~~~ftg~alel~p~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 173 (709)
..+||||||+++++++++|+|| +.|.|+++++.+|+.++|||+++++.|+.+| ++.+. ++ ..++++
T Consensus 82 ~~~~H~vVl~~~~~~~~~i~dP--~~~~g~~~~~~~ef~~~~~g~~l~~~~~~~~-------~~~~~-~~----~~~~~~ 147 (708)
T TIGR01193 82 GKLPHYYVVYGVTKNHLIIADP--DPTVGITKISKEDFYEEWTGIAIFISPTPEY-------KPIKE-KE----NSLLKF 147 (708)
T ss_pred CCCCcEEEEEEEeCCEEEEEcC--CcccCCEEecHHHHHhhCCCEEEEEEecccc-------ccccc-cc----chHHHH
Confidence 3579999999999999999999 5578999999999999999999999999877 21111 11 124566
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 174 WDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSS-EIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMIL 252 (709)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~-d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l 252 (709)
+++++++++.+..+++++++..++.++.|++++.+++..... +...+..-...+.++.++..++.++++++...++.++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (708)
T TIGR01193 148 IPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRL 227 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888999999899999999999999999998886543211 1111111111222333445677889999999999999
Q ss_pred HHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005203 253 VKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICS 332 (709)
Q Consensus 253 ~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~ 332 (709)
..++|.++|+|++++|++||+++++||+++|++ |++.++++++..+...+.++++.++++++|+++||++++++++.+|
T Consensus 228 ~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 306 (708)
T TIGR01193 228 SIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIP 306 (708)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999997 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 333 ALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFN 412 (709)
Q Consensus 333 l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (709)
+++++..++.+..++..++..+..++.++.+.|+++|+++||++|.|+.+.++|.+...+..+...+..+.......+..
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (708)
T TIGR01193 307 VYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKA 386 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888777778778877788887899999999999999999999999999999999988888888887776666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccc
Q 005203 413 MLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKK 492 (709)
Q Consensus 413 ~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~~~~ 492 (709)
++..+..++++++|++++.+|++|+|+++||.+|..++..|+..+.+.+.++..+..+.+|+.++++.++|.+.......
T Consensus 387 ~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~ 466 (708)
T TIGR01193 387 VTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTE 466 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccC
Confidence 77778888999999999999999999999999999999999999999999999999999999999988766431111111
Q ss_pred ccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH
Q 005203 493 LQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK 572 (709)
Q Consensus 493 ~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~ 572 (709)
.++..+.|+++||+|+|++ ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|+++++.+
T Consensus 467 ~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~ 544 (708)
T TIGR01193 467 LNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRH 544 (708)
T ss_pred CCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHH
Confidence 2234568999999999974 36899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHH
Q 005203 573 WLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIAR 650 (709)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLAR 650 (709)
++|++||||||||+||+|||+|||+++.++++++|++++|++.|+++|+|.+||+||||.+|| .+|||||||||+|||
T Consensus 545 ~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALAR 624 (708)
T ss_pred HHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999423899999999999999999999999999999998 499999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+++|+|||||||||+||+++|+.|.++|++++ ++|+|+||||++++.. +|
T Consensus 625 all~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~-----~~T~IiitHr~~~~~~-~D 676 (708)
T TIGR01193 625 ALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQ-----DKTIIFVAHRLSVAKQ-SD 676 (708)
T ss_pred HHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhc-----CCEEEEEecchHHHHc-CC
Confidence 9999999999999999999999999999998752 4899999999999864 55
No 4
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=6.6e-101 Score=908.83 Aligned_cols=588 Identities=24% Similarity=0.331 Sum_probs=517.4
Q ss_pred cccccccceeeecCcEEEeCCCCCCCCcceeechhHHHHHHHHHHHHhcCCCCCcccCChHHHHhhcCcchHHHHHHHHH
Q 005203 95 RCCHFHPLKSSSINGFSVQNDSLEHFDGEVNVDFNEKIRRWIRFIQSILPGGSWWSFDDDVEVKIMAKPVTLWRALGKMW 174 (709)
Q Consensus 95 ~~nhfvvl~~v~~~~~~i~dp~~~~a~g~r~~~~~e~~~~ftg~alel~p~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (709)
.+||||||+++++++++|+|| +.|+++++.+|+.++|+|+++++.|+.+| +.... ++ ..+++++
T Consensus 83 ~~~h~vvl~~~~~~~~~i~dP----~~g~~~~~~~e~~~~~~g~~l~~~~~~~~-------~~~~~-~~----~~~~~~~ 146 (710)
T TIGR03796 83 NFNHFVVVEGFRGGRVYLNDP----ALGPRTVSLEEFDESFTGVVLTFEPGPEF-------QKGGR-KP----SLLRALW 146 (710)
T ss_pred cCCcEEEEEEEeCCEEEEECC----CCCCEEccHHHHHhhCCCeEEEEEECccc-------cccCc-Cc----ccHHHHH
Confidence 369999999999999999999 99999999999999999999999999876 22111 11 2355677
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 175 DLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILV 253 (709)
Q Consensus 175 ~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~-~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~ 253 (709)
++++++++.+..+++++++..++.++.|++++.+++.... .+...+..-...+.++.++..++.++++++...++.++.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (710)
T TIGR03796 147 RRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLA 226 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899888889999999999999999998887653211 111111111112223334456778899999999999999
Q ss_pred HHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005203 254 KRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSA 333 (709)
Q Consensus 254 ~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~l 333 (709)
.+++.++|+|++++|+++|+++++||+++|+++| +.++++++..+..++.+++++++++++|+.++|++++++++++++
T Consensus 227 ~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~ 305 (710)
T TIGR03796 227 VGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAI 305 (710)
T ss_pred HHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988 889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 334 LAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNM 413 (709)
Q Consensus 334 ~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (709)
++++..++.+..++..++.++..++.++.+.|+++|+++||++|.|+.+.++|.+...+..+...+..+.......+...
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (710)
T TIGR03796 306 NVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTL 385 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777777777777777778899999999999999999999999999999998888888888887777777777788
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc----c
Q 005203 414 LYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMS----K 489 (709)
Q Consensus 414 i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~----~ 489 (709)
+..+..++++++|++++.+|++|+|++++|.+|...+..++..+...+.++..+..+.+|+.++++.++|..... .
T Consensus 386 i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~ 465 (710)
T TIGR03796 386 LTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPA 465 (710)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccc
Confidence 888888999999999999999999999999999999999999999999999999999999999998876643111 0
Q ss_pred -cccc-cCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC
Q 005203 490 -GKKL-QRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK 567 (709)
Q Consensus 490 -~~~~-~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~ 567 (709)
.... +...+.|+++||+|+|++. ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|++
T Consensus 466 ~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 544 (710)
T TIGR03796 466 AGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPRE 544 (710)
T ss_pred cccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHH
Confidence 0111 2235689999999999864 368999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHH
Q 005203 568 EVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQR 645 (709)
Q Consensus 568 ~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQR 645 (709)
+++.+++|++|||||||++||+|||+|||+++++ ++++|++++|++.++++|+|.+||+||||.+|| .+||||||||
T Consensus 545 ~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQR 623 (710)
T TIGR03796 545 EIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP-TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQR 623 (710)
T ss_pred HCCHHHHHhheeEEecCChhhhccHHHHhhCCCC-CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHH
Confidence 9999999999999999999999999999999976 899999999999999999999999999999999 4999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+|||||+++|+||||||||||||+++|++|.+.|++. ++|+|+||||++++.. +|
T Consensus 624 iaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~------~~T~IiitHrl~~i~~-~D 679 (710)
T TIGR03796 624 LEIARALVRNPSILILDEATSALDPETEKIIDDNLRRR------GCTCIIVAHRLSTIRD-CD 679 (710)
T ss_pred HHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhc------CCEEEEEecCHHHHHh-CC
Confidence 99999999999999999999999999999999999862 4999999999999876 66
No 5
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.5e-100 Score=903.30 Aligned_cols=591 Identities=24% Similarity=0.313 Sum_probs=517.0
Q ss_pred ccccccceeeecCc-EEEeCCCCCCCCc--ceeechhHHHHHHHHHHHHhcCCCCCcccCChHHHHhhcCcchHHHHHHH
Q 005203 96 CCHFHPLKSSSING-FSVQNDSLEHFDG--EVNVDFNEKIRRWIRFIQSILPGGSWWSFDDDVEVKIMAKPVTLWRALGK 172 (709)
Q Consensus 96 ~nhfvvl~~v~~~~-~~i~dp~~~~a~g--~r~~~~~e~~~~ftg~alel~p~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 172 (709)
-|||||++++++++ ++|+|| |.| +++++.+|++++|+|+++++.|+.+| ++..++.+. ...+++
T Consensus 71 ~~h~vvl~~~~~~~~~~i~DP----~~g~~~~~~~~~e~~~~~~g~~l~~~~~~~~-------~~~~~~~~~--~~~~~~ 137 (694)
T TIGR03375 71 DGRACVLLGIDEDGKARVLLP----ETGDGEQELSLDALEALYSGYAIFVRPQFRF-------DARADELIS--PRPKHW 137 (694)
T ss_pred CCcEEEEEEEcCCCcEEEEcc----CCCCCceEecHHHHHhhcCCeEEEEeccccc-------ccccccccc--cccchH
Confidence 37999999999999 999999 999 99999999999999999999999876 211111000 123456
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 173 MWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQ-SSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMI 251 (709)
Q Consensus 173 l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~-~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~ 251 (709)
++++++++++.+...++++++..++.++.|++++..++... ..+...+......+.++.++..++.++++++....+.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (694)
T TIGR03375 138 FWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKK 217 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778889999999999999999999999999988765432 11111111111112223334567788999999999999
Q ss_pred HHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005203 252 LVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMIC 331 (709)
Q Consensus 252 l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~ 331 (709)
+..++|.++|+|++++|++| +++++||+++|+ +|++.++++++..+...+.++++.++++++|+++||++++++++.+
T Consensus 218 ~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 295 (694)
T TIGR03375 218 ADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAI 295 (694)
T ss_pred HHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999998 789999999999 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 332 SALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCF 411 (709)
Q Consensus 332 ~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (709)
|+++++..++.+..++..++..+..++.++.+.|+++|+++||+||.|+.+.++|.+..++..+...+..+.......+.
T Consensus 296 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (694)
T TIGR03375 296 PLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFA 375 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988877777777777777777789999999999999999999999999999999999999888888887777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccc
Q 005203 412 NMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGK 491 (709)
Q Consensus 412 ~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~~~ 491 (709)
.++..+..++++++|++++.+|++|+|++++|++|..++..|+..+.+.+.++.....+.+|+.++++.++|.+......
T Consensus 376 ~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~ 455 (694)
T TIGR03375 376 QFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFL 455 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 88888888899999999999999999999999999999999999999999999999999999999999877643111111
Q ss_pred cccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH
Q 005203 492 KLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI 571 (709)
Q Consensus 492 ~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~ 571 (709)
..+...+.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|+++++.
T Consensus 456 ~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~ 534 (694)
T TIGR03375 456 HRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP 534 (694)
T ss_pred CCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH
Confidence 112234679999999999864 4689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIA 649 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLA 649 (709)
+++|++|+||+||+++|+|||+|||+++++ ++++|++++|++.++++|+|++||+||||.+|| .+|||||||||+||
T Consensus 535 ~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalA 613 (694)
T TIGR03375 535 ADLRRNIGYVPQDPRLFYGTLRDNIALGAP-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALA 613 (694)
T ss_pred HHHHhccEEECCChhhhhhhHHHHHhCCCC-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999976 899999999999999999999999999999999 49999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 650 RAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 650 RALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||+++|+|||||||||+||+++|+.|.+.|+++.+ ++|+|+||||++++. .+|
T Consensus 614 Rall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~----~~T~iiItHrl~~~~-~~D 667 (694)
T TIGR03375 614 RALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA----GKTLVLVTHRTSLLD-LVD 667 (694)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC----CCEEEEEecCHHHHH-hCC
Confidence 999999999999999999999999999999998865 499999999999985 455
No 6
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.1e-99 Score=895.12 Aligned_cols=582 Identities=23% Similarity=0.295 Sum_probs=508.9
Q ss_pred CCc--ccccccceeeecCcEEEeCCCCCCCCcce-eechhHHHHHHHHHHHHhcCCCCCcccCChHHHHhhcCcchHHHH
Q 005203 93 SKR--CCHFHPLKSSSINGFSVQNDSLEHFDGEV-NVDFNEKIRRWIRFIQSILPGGSWWSFDDDVEVKIMAKPVTLWRA 169 (709)
Q Consensus 93 ~~~--~nhfvvl~~v~~~~~~i~dp~~~~a~g~r-~~~~~e~~~~ftg~alel~p~~~f~~~~~~~~~~~~~~~~~~~~~ 169 (709)
--| .||||||+++++++++|+|| |.|++ +++.+|++++ ||+++++.|+ | + ++ +...++.
T Consensus 65 ~~~~~~~h~vvl~~~~~~~~~i~dP----~~g~~~~~~~~e~~~~-~g~~~~~~~~--~-------~--~~--~~~~~~~ 126 (686)
T TIGR03797 65 AYTAEDGRPVALLPVSRGGYEIFDP----ATGTRRRVDAAMAATL-APEAYMFYRP--L-------P--DK--ALGLRDL 126 (686)
T ss_pred EEEcCCCCEEEEEEEcCCEEEEECC----CCCCCcccCHHHHHhc-CCEEEEEecC--C-------c--cc--cccHHHH
Confidence 347 79999999999999999999 99998 9999999999 9999999998 5 1 11 1223333
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 170 LGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIA 248 (709)
Q Consensus 170 ~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~-~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~ 248 (709)
++. .++++++.+...++++++..++.++.|++++.+++.... .+...+......+.++.++..++.++++++...+
T Consensus 127 ~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (686)
T TIGR03797 127 LRF---ALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRL 203 (686)
T ss_pred HHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 256778888888999999999999999998887653321 1111111111222233344567888999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005203 249 NMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTL 328 (709)
Q Consensus 249 ~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l 328 (709)
+.++..++|.++|+|++++|++||+++++||+++|++ |++.+++.++..+...+.+.++.++++++|+++||+++++++
T Consensus 204 ~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 282 (686)
T TIGR03797 204 ETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAV 282 (686)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997 679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 329 MICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWN 408 (709)
Q Consensus 329 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 408 (709)
+.+++++++..++.+..++..++..+..++.++.+.|+++|+++||++|.|+++.++|.+..++..+...+..+......
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (686)
T TIGR03797 283 ALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888877777777777777777788999999999999999999999999999999999998888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Q 005203 409 LCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMS 488 (709)
Q Consensus 409 ~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~ 488 (709)
.+...+..+..++++++|++++.+|++|+|++++|.++..++..|+..+...+.++.++..+.+|+.++++.++|.+.
T Consensus 363 ~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-- 440 (686)
T TIGR03797 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE-- 440 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc--
Confidence 777778888889999999999999999999999999999999999999999999999999999999999987765431
Q ss_pred ccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC
Q 005203 489 KGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE 568 (709)
Q Consensus 489 ~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~ 568 (709)
.........+.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|+++
T Consensus 441 ~~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 519 (686)
T TIGR03797 441 AKTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAG 519 (686)
T ss_pred CcCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCc
Confidence 111112234679999999999754 3789999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHH
Q 005203 569 VDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRI 646 (709)
Q Consensus 569 ~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRI 646 (709)
++.+++|++||||+||++||+|||+|||+++++ +++|++++|++.|+++|+|++||+||||.+|| .+|||||||||
T Consensus 520 ~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRi 597 (686)
T TIGR03797 520 LDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597 (686)
T ss_pred CCHHHHHhccEEEccCCccCcccHHHHHhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 999999999999999999999999999999964 89999999999999999999999999999999 49999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 647 aLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||+++|+|||||||||+||+++|++|.++|+++ ++|+|+||||++++.. +|
T Consensus 598 alARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~------~~T~IiItHr~~~i~~-~D 652 (686)
T TIGR03797 598 LIARALVRKPRILLFDEATSALDNRTQAIVSESLERL------KVTRIVIAHRLSTIRN-AD 652 (686)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh------CCeEEEEecChHHHHc-CC
Confidence 9999999999999999999999999999999999876 2899999999999876 66
No 7
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.4e-97 Score=872.89 Aligned_cols=587 Identities=27% Similarity=0.342 Sum_probs=514.5
Q ss_pred cccccccceeeecCcEEEeCCCCCCCCc-ceeechhHHHHHHHHHHHHhcCCCCCcccCChHHHHhhcCcchHHHHHHHH
Q 005203 95 RCCHFHPLKSSSINGFSVQNDSLEHFDG-EVNVDFNEKIRRWIRFIQSILPGGSWWSFDDDVEVKIMAKPVTLWRALGKM 173 (709)
Q Consensus 95 ~~nhfvvl~~v~~~~~~i~dp~~~~a~g-~r~~~~~e~~~~ftg~alel~p~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 173 (709)
|-||||||+++++++++|+|| +.| +++++.+|+.++|||+++++.|+. + +++ +++. .+.++
T Consensus 69 ~~~~~vvl~~~~~~~~~i~Dp----~~g~~~~i~~~e~~~~~~g~~l~~~~~~-~-------~~~--~~~~----~~~~~ 130 (694)
T TIGR01846 69 GEGGWFVLGKLTANGVTIYDP----PGDAPEVLSREVLEALWSGTVILLATRS-V-------AGK--ALKF----GFSWF 130 (694)
T ss_pred ECCcEEEEEEEcCCEEEEEcC----CCCCceeeCHHHHHhhCCCeEEEEecCc-c-------ccc--cccC----cHHHH
Confidence 568999999999999999999 998 889999999999999999999986 4 111 1111 24566
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 174 WDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMIL 252 (709)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~-~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l 252 (709)
+++++++++.+...++++++..++.++.|++++.+++.... .+...+......++++.++..++.+++.++...++.++
T Consensus 131 ~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (694)
T TIGR01846 131 IPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRI 210 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888889999999999999999998887654321 11111111111222333345677889999999999999
Q ss_pred HHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005203 253 VKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICS 332 (709)
Q Consensus 253 ~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~ 332 (709)
..++|.++|+|++++|++||+++++||+++|+ +|++.++++++..+...+.++++.++++++|++++|++++++++.+|
T Consensus 211 ~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 289 (694)
T TIGR01846 211 DVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLV 289 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 59999999999999998989998888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 333 ALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFN 412 (709)
Q Consensus 333 l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (709)
+++++..++.+..++..++..+..++.++.+.|+++|+++||++|.|+.+.+||.+..++..+...+..+..........
T Consensus 290 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR01846 290 CYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIE 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888776766666666666666788999999999999999999999999999999999999988888877777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccc
Q 005203 413 MLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKK 492 (709)
Q Consensus 413 ~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~~~~ 492 (709)
++..+..++++++|++++.+|++|+|+++||.++...+..|+..+.+.+..+.++..+.+|+.++++.++|... .....
T Consensus 370 ~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-~~~~~ 448 (694)
T TIGR01846 370 LIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS-AGLAA 448 (694)
T ss_pred HHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC-CCCCC
Confidence 88888889999999999999999999999999999999999999999999999999999999999988766431 11111
Q ss_pred ccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH
Q 005203 493 LQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK 572 (709)
Q Consensus 493 ~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~ 572 (709)
.+...+.|+++||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+++++.+
T Consensus 449 ~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~ 527 (694)
T TIGR01846 449 LPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPA 527 (694)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHH
Confidence 22335689999999999854 36799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHH
Q 005203 573 WLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIAR 650 (709)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLAR 650 (709)
++|++|+||+||+++|+|||+|||+++++ +++++++++|++.++++|+|.+||+||||.+|| .+|||||||||+|||
T Consensus 528 ~~r~~i~~v~q~~~lf~~ti~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lAR 606 (694)
T TIGR01846 528 WLRRQMGVVLQENVLFSRSIRDNIALCNP-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIAR 606 (694)
T ss_pred HHHHhCeEEccCCeehhhhHHHHHhcCCC-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999976 899999999999999999999999999999998 499999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+++|+|||||||||+||+++|+.+.+.|+++.+ ++|+|+||||++++.. +|
T Consensus 607 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~----~~t~i~itH~~~~~~~-~d 659 (694)
T TIGR01846 607 ALVGNPRILIFDEATSALDYESEALIMRNMREICR----GRTVIIIAHRLSTVRA-CD 659 (694)
T ss_pred HHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhC----CCEEEEEeCChHHHHh-CC
Confidence 99999999999999999999999999999998754 4999999999999875 66
No 8
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4e-95 Score=852.22 Aligned_cols=528 Identities=34% Similarity=0.500 Sum_probs=460.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HhhccchhHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 005203 170 LGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFL---TASI--FTAQSSEIAVFH--RNVRLLILLCVTSGICSGLRG 242 (709)
Q Consensus 170 ~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~---~~~i--~~~~~~d~~~~~--~~~~ll~~l~~~~~~~~~lr~ 242 (709)
+.+++++.+++++.++.+.+.+++. +...|.|- ..++ +.....|+..-. ....+++.++++..+..+++.
T Consensus 652 ~~~i~k~~~pe~~~l~lG~i~a~i~---G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~ 728 (1228)
T KOG0055|consen 652 FWRIFKLNKPEWPYLLLGSLGAAIR---GATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQH 728 (1228)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777899988888777655544 44556543 2222 221222211111 112233345555677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhhccC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005203 243 CCFGIANMILVKRMRETLYSALLLQDISFFDSE-TVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSW 321 (709)
Q Consensus 243 ~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~-~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~ 321 (709)
+++.+++.++..++|...|+++++++.+|||.. |+|.+.+|+.+|...++..+...+..++.++..+++.+++.|+|+|
T Consensus 729 ~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W 808 (1228)
T KOG0055|consen 729 YFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGW 808 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999874 5599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Q 005203 322 PLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQS 401 (709)
Q Consensus 322 ~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~ 401 (709)
+|++++++..|++++..+.+.++.+....+..+...+......|++.+++||++|+.|+++.+.|.+.++...+...|..
T Consensus 809 ~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~ 888 (1228)
T KOG0055|consen 809 RLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRG 888 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005203 402 AAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLM 481 (709)
Q Consensus 402 ~~~~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~ 481 (709)
.+.++..++.+.+......+.+|+|++++.+|.++...++-.+.....-...+........++..+..++.+++++++.+
T Consensus 889 ~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~ 968 (1228)
T KOG0055|consen 889 LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRK 968 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999998765444333333444555667788889999999999999999
Q ss_pred CCCccc-cccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEE
Q 005203 482 PSDQFM-SKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQIL 560 (709)
Q Consensus 482 ~e~~~~-~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~ 560 (709)
|+.+.. +.+...+...|+|+|+||+|+||.+++.+||+|+||+|++||++||||||||||||++.||.|+|+|++|.|.
T Consensus 969 ~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~ 1048 (1228)
T KOG0055|consen 969 PTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVK 1048 (1228)
T ss_pred CCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 865422 1233344568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCC
Q 005203 561 IDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLL 638 (709)
Q Consensus 561 idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~L 638 (709)
|||+|+++++++++|++||.|+|||.||++||||||+||.+ +++++||++|||.|++|+||.+||+||||.||| .+|
T Consensus 1049 IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QL 1127 (1228)
T KOG0055|consen 1049 IDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQL 1127 (1228)
T ss_pred ECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcC
Confidence 99999999999999999999999999999999999999965 599999999999999999999999999999999 499
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 639 SGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 639 SGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
|||||||||||||++|||+||+|||||||||.++|+.|+++|++.+. |||+|+||||||||.-
T Consensus 1128 SGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~----gRT~IvIAHRLSTIqn 1190 (1228)
T KOG0055|consen 1128 SGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME----GRTTIVIAHRLSTIQN 1190 (1228)
T ss_pred CchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc----CCcEEEEecchhhhhc
Confidence 99999999999999999999999999999999999999999999875 5999999999999864
No 9
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.8e-92 Score=810.57 Aligned_cols=520 Identities=24% Similarity=0.277 Sum_probs=450.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 005203 172 KMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRL--LILLCVTSGICSGLRGCCFGIAN 249 (709)
Q Consensus 172 ~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~l--l~~l~~~~~~~~~lr~~~~~~~~ 249 (709)
+++++.+++++.++..++++++.+++.+..|++++..++.....+. .......+ +.++.++..++.+++.++.....
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (529)
T TIGR02868 3 RILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAA 81 (529)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888888888999999999999998887654321111 11000011 11223345566778888888889
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005203 250 MILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLM 329 (709)
Q Consensus 250 ~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~ 329 (709)
.++..++|.++|+|++++|.+||++.++||+++|+++|++.+++.+...+..++.+++..++++++|++++|.+++++++
T Consensus 82 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~ 161 (529)
T TIGR02868 82 LRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAA 161 (529)
T ss_pred HHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 330 ICSALAGLM-LIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWN 408 (709)
Q Consensus 330 ~~~l~~~i~-~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 408 (709)
.+|++.++. .+..+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.+|+++..++..+...+..+......
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02868 162 GLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGA 241 (529)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 878776664 4444444555566666678899999999999999999999999999999999999888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Q 005203 409 LCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMS 488 (709)
Q Consensus 409 ~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~ 488 (709)
.+..++..+..++++++|++++.+|++|+|++++++.|...+..++..+.+.+..+.....+.+|+.++++.+++.+...
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 321 (529)
T TIGR02868 242 AAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV 321 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence 77777777888888999999999999999999999999999999999999999999999999999999998776532111
Q ss_pred cc--ccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC
Q 005203 489 KG--KKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI 566 (709)
Q Consensus 489 ~~--~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di 566 (709)
.. ....+..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|+
T Consensus 322 ~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i 399 (529)
T TIGR02868 322 VPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSV 399 (529)
T ss_pred CCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh
Confidence 11 1111234579999999999853 4699999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHH
Q 005203 567 KEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (709)
Q Consensus 567 ~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (709)
+++ .+++|++||||||||+||+|||+|||++|++ ++++|++++|++.|+++|||.+||+||||.||| .+|||||||
T Consensus 400 ~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQ 477 (529)
T TIGR02868 400 SSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQ 477 (529)
T ss_pred hhH-HHHHHhheEEEccCcccccccHHHHHhccCC-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHH
Confidence 999 9999999999999999999999999999976 899999999999999999999999999999999 489999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecCh
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRl 700 (709)
||+|||||+++|+||||||||||||+++|+.|+++|+++.+ ++|+|+||||+
T Consensus 478 RiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~----~~TvIiItHrl 529 (529)
T TIGR02868 478 RLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALS----GKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC----CCEEEEEecCC
Confidence 99999999999999999999999999999999999998754 49999999996
No 10
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=5.2e-92 Score=831.13 Aligned_cols=537 Identities=40% Similarity=0.595 Sum_probs=476.2
Q ss_pred cchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 163 PVTLWRALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQ-SSEIAVFHRNVRLLILLCVTSGICSGLR 241 (709)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~-~~d~~~~~~~~~ll~~l~~~~~~~~~lr 241 (709)
+.+.+..+++++++.+++++.+..++++.++.+++.++.|++++.+++... ..+...+.....++.+++++..++.+++
T Consensus 142 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 221 (711)
T TIGR00958 142 QSETADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLR 221 (711)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556778888999999999999999999999999999999988876432 1121222223333444555567788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005203 242 GCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSW 321 (709)
Q Consensus 242 ~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~ 321 (709)
+++..+.+.++..++|.++|++++++|++||++.++||+++|+++|++.+++.+...+..++.++++.++++++|+.+||
T Consensus 222 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~ 301 (711)
T TIGR00958 222 GGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSP 301 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Q 005203 322 PLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQS 401 (709)
Q Consensus 322 ~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~ 401 (709)
++++++++.+|+++++..++.++.++..++.++..++.++.+.|+++|+++||+|+.|+++.++|.+..++..+...+..
T Consensus 302 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 381 (711)
T TIGR00958 302 RLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKA 381 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888888999999999999999999999999999999999999998877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005203 402 AAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLM 481 (709)
Q Consensus 402 ~~~~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~ 481 (709)
+...........+..+..++++++|++++.+|++|+|++++++.|..++..++..+.+.+.+++++..+.+|+.++++.+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 461 (711)
T TIGR00958 382 LAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRK 461 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 66666666666777778888999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCccccccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE
Q 005203 482 PSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI 561 (709)
Q Consensus 482 ~e~~~~~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~i 561 (709)
++.+.. ....+.+..+.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++
T Consensus 462 ~~~~~~-~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 462 PNIPLT-GTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred CCCCCC-CCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 664311 1112223356799999999998654568999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCC
Q 005203 562 DGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLS 639 (709)
Q Consensus 562 dG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LS 639 (709)
||+|+++++.+++|++|+||+|||++|+|||+|||+++++ ++++|++++|++.|+++++|++||+||||.+|| .+||
T Consensus 541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS 619 (711)
T TIGR00958 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT-DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLS 619 (711)
T ss_pred CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCC
Confidence 9999999999999999999999999999999999999976 889999999999999999999999999999999 4999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 640 GGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||||+|||||+|+|+|||||||||+||+++|+.|.+ ... .+ ++|+|+||||++++.. +|
T Consensus 620 GGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~-~~----~~TvIiItHrl~~i~~-aD 681 (711)
T TIGR00958 620 GGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS-RA----SRTVLLIAHRLSTVER-AD 681 (711)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc-cC----CCeEEEEeccHHHHHh-CC
Confidence 999999999999999999999999999999999999998 322 22 5999999999999865 66
No 11
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.8e-91 Score=810.33 Aligned_cols=529 Identities=20% Similarity=0.261 Sum_probs=451.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 169 ALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQ--SSEIAVFHRNVRLLILLCVTSGICSGLRGCCFG 246 (709)
Q Consensus 169 ~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~--~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~ 246 (709)
.+++++++.+++++.++.+++++++..++.+..|++++..++... ..+..........+.++.++..++.+++.+...
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 9 LTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999999999999999888765321 111111111112223334445667888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005203 247 IANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLC 326 (709)
Q Consensus 247 ~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv 326 (709)
..+.++..++|..+|+|++++|+++|+++++|++++|+++|++.+++.+...+..++.+++..++++++|+++||+++++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 327 TLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGF 406 (709)
Q Consensus 327 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~ 406 (709)
+++.+|+.+++...+.+..++..++.++..++.++.+.|.++|+++||+|+.|+.+.+++.+..+++.+...+..+....
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFL 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888887777777777777777777899999999999999999999999999999999999988887777666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 407 WNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQL---------TKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQL 477 (709)
Q Consensus 407 ~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l---------~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~i 477 (709)
...+..++..+..+++++++++.+ .|.+|+|.+ ++++.|...+..|+..+...+..+..+..+.+|+.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 327 (588)
T PRK11174 249 SSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTF 327 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555555555555555665544 488888764 2334677778899999999999999999999999999
Q ss_pred HhcCCCCcccccccccc-CCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc
Q 005203 478 MDLMPSDQFMSKGKKLQ-RLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN 556 (709)
Q Consensus 478 l~~~~e~~~~~~~~~~~-~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~ 556 (709)
++.++++.. ......+ ...+.|+|+||+|.|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+| |++
T Consensus 328 l~~~~~~~~-~~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 328 LETPLAHPQ-QGEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred HcCCCcccC-CCccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 987654321 1111111 123579999999988643 57999999999999999999999999999999999999 999
Q ss_pred ceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC-
Q 005203 557 GQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD- 635 (709)
Q Consensus 557 G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe- 635 (709)
|+|++||+|+++++.+++|++|+||+|||+||+|||+|||++|+| ++++|++++|++.|+++|||.+||+||||.|||
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~-~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP-DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC-CCCHHHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 999999999999999999999999999999999999999999976 899999999999999999999999999999999
Q ss_pred -CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 636 -DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 636 -~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.+|||||||||+|||||+++|+||||||||||||+++|+.|.++|+++.+ ++|+|+||||++++.. +|
T Consensus 483 G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~----~~TvIiItHrl~~i~~-aD 551 (588)
T PRK11174 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR----RQTTLMVTHQLEDLAQ-WD 551 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC----CCEEEEEecChHHHHh-CC
Confidence 49999999999999999999999999999999999999999999998865 4999999999999875 55
No 12
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=9.4e-89 Score=785.89 Aligned_cols=526 Identities=37% Similarity=0.591 Sum_probs=459.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 170 LGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIAN 249 (709)
Q Consensus 170 ~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~ 249 (709)
+++++.+.+ ++ .+..+.++.++..++.+..|.++...++... .+.........++.++.++..++.++..+...+.+
T Consensus 4 ~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (567)
T COG1132 4 LRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLG 80 (567)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555 66 7777888888888888899988876654432 11111112222333334445566777777778888
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005203 250 MILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLM 329 (709)
Q Consensus 250 ~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~ 329 (709)
.++..++|.++|++++++|+++|++.++|++++|+++|++.++..+......+...+++.++.+++++..+|.+++++++
T Consensus 81 ~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 160 (567)
T COG1132 81 QKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLL 160 (567)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998885555557888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 330 ICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNL 409 (709)
Q Consensus 330 ~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 409 (709)
..|++.++..++.++.++..+..++..++.++.+.|+++|+++||+|+.++.+.+++.+..+...+...+..+.......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (567)
T COG1132 161 ILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAP 240 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98988888777776667777788887899999999999999999999999999999998888888887777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 005203 410 CFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSK 489 (709)
Q Consensus 410 ~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~ 489 (709)
....+..+..++++++|++++..|.+++|.+++|+.|..++..++..+...+..+.....+.+|+.++++.+++......
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~ 320 (567)
T COG1132 241 LMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD 320 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC
Confidence 77888888999999999999999999999999999999999999999999999999999999999999998776431111
Q ss_pred cccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC
Q 005203 490 GKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV 569 (709)
Q Consensus 490 ~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~ 569 (709)
......++|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|++++
T Consensus 321 --~~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i 396 (567)
T COG1132 321 --PLKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI 396 (567)
T ss_pred --CCCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhc
Confidence 12234567999999999985 36899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHH
Q 005203 570 DIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIA 647 (709)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIa 647 (709)
+.++||++||+|+||++||+|||+|||++|++ ++++|++++||+.|++||||+++|+||||.||| .+|||||||||+
T Consensus 397 ~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~-~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 397 SLDSLRKRIGIVSQDPLLFSGTIRENIALGRP-DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred CHHHHHHhccEEcccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 99999999999999999999999999999987 899999999999999999999999999999998 499999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||++|+|+|||||||||+||++||+.|+++++++.++ +|+|+||||++|+.. +|
T Consensus 476 iARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~----rT~iiIaHRlsti~~-aD 531 (567)
T COG1132 476 IARALLRNPPILILDEATSALDTETEALIQDALKKLLKG----RTTLIIAHRLSTIKN-AD 531 (567)
T ss_pred HHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcC----CEEEEEeccHhHHHh-CC
Confidence 999999999999999999999999999999999987754 899999999999988 66
No 13
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=6.4e-88 Score=781.45 Aligned_cols=536 Identities=29% Similarity=0.460 Sum_probs=467.4
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 165 TLWRALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSE-IAVFHRNVRLLILLCVTSGICSGLRGC 243 (709)
Q Consensus 165 ~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d-~~~~~~~~~ll~~l~~~~~~~~~lr~~ 243 (709)
+.|+.+++++++++++++.++..+++.++..++.++.|++++..++.....+ ..........++++.++..++.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 87 (582)
T PRK11176 8 STWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSY 87 (582)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788888888888887777777777777778888776654322111 111111111122234445667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005203 244 CFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPL 323 (709)
Q Consensus 244 ~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~L 323 (709)
+...++.++..++|..+|++++++|.++|++++.|++++|+++|++.+++.+...+..++.++++.+++++++++++|++
T Consensus 88 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 167 (582)
T PRK11176 88 CISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 324 GLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAA 403 (709)
Q Consensus 324 alv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~ 403 (709)
++++++.+|+++++...+.+..++..++.++..++..+.+.|.++|+++||++|.|+.+.++|++..+++.+...+..+.
T Consensus 168 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T PRK11176 168 SLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888777777777777777777887889999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 005203 404 YGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPS 483 (709)
Q Consensus 404 ~~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e 483 (709)
......+..++..+..++++++|++.+.+|++|+|+++++..|..++..++..+...+..+.....+.+|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 327 (582)
T PRK11176 248 SSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 77777777788878888899999999999999999999999999999999999999999999999999999999987655
Q ss_pred CccccccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC
Q 005203 484 DQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG 563 (709)
Q Consensus 484 ~~~~~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG 563 (709)
.+. .....++..+.|+++||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||
T Consensus 328 ~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 404 (582)
T PRK11176 328 KDE--GKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG 404 (582)
T ss_pred CCC--CCcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECC
Confidence 321 111122234579999999999864 36899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChH
Q 005203 564 FPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGG 641 (709)
Q Consensus 564 ~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGG 641 (709)
+|+++++.+++|++|+|||||+++|+|||+|||+++++++.++|+++++++.+|++++|++||+||||.+|| .+||||
T Consensus 405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred EEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 999999999999999999999999999999999999764589999999999999999999999999999999 489999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 642 QkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||+|||||+|+|+||||||||||||+++|+.+.++|+++.+ ++|+|+||||++++.. ||
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~----~~tvI~VtHr~~~~~~-~D 546 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK----NRTSLVIAHRLSTIEK-AD 546 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC----CCEEEEEecchHHHHh-CC
Confidence 99999999999999999999999999999999999999998864 4999999999998765 55
No 14
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=8.9e-88 Score=838.16 Aligned_cols=532 Identities=26% Similarity=0.343 Sum_probs=441.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 170 LGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAV--FHRNVRLLILLCVTSGICSGLRGCCFGI 247 (709)
Q Consensus 170 ~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~--~~~~~~ll~~l~~~~~~~~~lr~~~~~~ 247 (709)
+.++++.++++++.++.+++++++..++..+.|+++...+......+... ......++++++++..++.+++.|+..+
T Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~ 892 (1466)
T PTZ00265 813 LRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNV 892 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777888888888888877788888777654322111100 1111223334455567788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhcc--CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005203 248 ANMILVKRMRETLYSALLLQDISFFDS--ETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGL 325 (709)
Q Consensus 248 ~~~~l~~~lr~~lf~~Ll~lp~~~fe~--~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lal 325 (709)
++.++..++|..+|++++++|++||++ .++|++++|+++|++.+++.+...+..++..+++++++++++++++|.+++
T Consensus 893 ~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l 972 (1466)
T PTZ00265 893 IGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAA 972 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986 789999999999999999999999998898999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHH-----------------HHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHH
Q 005203 326 CTLMICSALAGLMLIYGLYQKKA-AKL-----------------VQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYK 387 (709)
Q Consensus 326 v~l~~~~l~~~i~~~~~~~~~~~-~~~-----------------~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~ 387 (709)
++++++++ +...+.+..+.. .++ ..+..++.++.+.|+++|+++||+|+.|+++.++|.
T Consensus 973 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~ 1049 (1466)
T PTZ00265 973 VLTGTYFI---FMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIE 1049 (1466)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHH
Confidence 76543332 222232222211 111 122245567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 388 HWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQS 467 (709)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~ 467 (709)
+..+...+...+.....+.+..+...+..+..++++|+|++++.+|++|+|++++++.+......++..+...+.++..+
T Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a 1129 (1466)
T PTZ00265 1050 KAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENA 1129 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888887777777777777777788888899999999999999999999998877554445567788888899999
Q ss_pred HHHHHHHHHHHhcCCCCccccc-ccc---ccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHH
Q 005203 468 VGASEKVFQLMDLMPSDQFMSK-GKK---LQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKST 543 (709)
Q Consensus 468 ~~~~~Rl~~il~~~~e~~~~~~-~~~---~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKST 543 (709)
..+.+|+.++++.+++.+..+. +.. .+...+.|+|+||+|+||++++.+||+|+||+|+|||++||||||||||||
T Consensus 1130 ~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKST 1209 (1466)
T PTZ00265 1130 KLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKST 1209 (1466)
T ss_pred HHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHH
Confidence 9999999999998764321111 111 122356899999999998754568999999999999999999999999999
Q ss_pred HHHHHhcCCCC------------------------------------------------------CcceEEECCEeCCCC
Q 005203 544 LVNLLLRLYEP------------------------------------------------------TNGQILIDGFPIKEV 569 (709)
Q Consensus 544 LlkLLlgl~~p------------------------------------------------------~~G~I~idG~di~~~ 569 (709)
|++||+|||+| ++|+|++||+|++++
T Consensus 1210 l~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~ 1289 (1466)
T PTZ00265 1210 VMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDY 1289 (1466)
T ss_pred HHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhC
Confidence 99999999999 699999999999999
Q ss_pred CHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHH
Q 005203 570 DIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIA 647 (709)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIa 647 (709)
+.+++|++||||+|||+||+|||+|||+||++ ++++|+|++||+.|++||||.+||+||||.||| .+||||||||||
T Consensus 1290 ~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIa 1368 (1466)
T PTZ00265 1290 NLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIA 1368 (1466)
T ss_pred CHHHHHhhccEeCCCCccccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHH
Confidence 99999999999999999999999999999976 899999999999999999999999999999999 499999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||+|+|+||||||||||||+++|+.|+++|+++.. .+++|+|+||||++|+.. +|
T Consensus 1369 IARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~--~~~~TvIiIaHRlsti~~-aD 1426 (1466)
T PTZ00265 1369 IARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKD--KADKTIITIAHRIASIKR-SD 1426 (1466)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhc--cCCCEEEEEechHHHHHh-CC
Confidence 99999999999999999999999999999999998741 025999999999999875 45
No 15
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.7e-87 Score=772.90 Aligned_cols=527 Identities=21% Similarity=0.271 Sum_probs=454.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchh--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 172 KMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQ-SSEI--AVFHR--NVRLLILLCVTSGICSGLRGCCFG 246 (709)
Q Consensus 172 ~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~-~~d~--~~~~~--~~~ll~~l~~~~~~~~~lr~~~~~ 246 (709)
+++++.+++++.++.+++++++..++.+..|.++++.++... ..+. ..+.. ....+.+++++..++.++..+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (574)
T PRK11160 6 PFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSH 85 (574)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888898989999999999999999998888775321 1110 00100 011122233445667788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005203 247 IANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLC 326 (709)
Q Consensus 247 ~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv 326 (709)
..+.++..++|.++|+|++++|+++|+++++||+++|+++|++.+++++...+..++.++++.++++++|+++||+++++
T Consensus 86 ~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 165 (574)
T PRK11160 86 DATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALT 165 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 327 TLMICSALAGL-MLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYG 405 (709)
Q Consensus 327 ~l~~~~l~~~i-~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~ 405 (709)
+++.+|++.++ ..++.+..++..++.++..++.++.+.|.++|+++||+||.|+.+.+++.+..+++.+...+..+...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (574)
T PRK11160 166 LGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTG 245 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888776554 45566666677777777789999999999999999999999999999999999999998888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 005203 406 FWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWL-IYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSD 484 (709)
Q Consensus 406 ~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~-~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~ 484 (709)
....+..++..+..++++++|++++ +|.+|+|.+++|..|.... ..++..+...+..+.++..+.+|+.++++.+++.
T Consensus 246 ~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~ 324 (574)
T PRK11160 246 LSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEV 324 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7777777777777888899999984 8999999999998886554 4566778888889999999999999999987763
Q ss_pred ccccccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE
Q 005203 485 QFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF 564 (709)
Q Consensus 485 ~~~~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~ 564 (709)
+... +.......+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+
T Consensus 325 ~~~~-~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~ 402 (574)
T PRK11160 325 TFPT-TSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQ 402 (574)
T ss_pred CCCc-ccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 2111 11112234679999999999864 357999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHH
Q 005203 565 PIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQ 642 (709)
Q Consensus 565 di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQ 642 (709)
|+++++.+++|++|+||+||++||+|||+|||+++++ ++++|+++++++.++++++|++ |+||||.+|| .+|||||
T Consensus 403 ~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGq 480 (574)
T PRK11160 403 PIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP-NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGE 480 (574)
T ss_pred EhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC-ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHH
Confidence 9999999999999999999999999999999999977 8999999999999999999999 9999999999 4899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 643 kQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+|||||+++|+|||||||||+||+++|+.|.+.|+++.+ ++|+|+||||++++.. +|
T Consensus 481 rqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~----~~tviiitHr~~~~~~-~d 541 (574)
T PRK11160 481 QRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ----NKTVLMITHRLTGLEQ-FD 541 (574)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC----CCEEEEEecChhHHHh-CC
Confidence 9999999999999999999999999999999999999998764 4999999999999875 56
No 16
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=3.4e-87 Score=766.94 Aligned_cols=519 Identities=25% Similarity=0.339 Sum_probs=449.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 181 RWIIFAAFSALIIAALSEIFIPHFLTASIFTAQ-SS-EIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRE 258 (709)
Q Consensus 181 ~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~-~~-d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~ 258 (709)
++.+..+++++++.+++.+..|++++..++... .. +...+.....++.++.++..++.+++.++...++.++..++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888899999999999888875431 11 1111111122233344456678889999999999999999999
Q ss_pred HHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 005203 259 TLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGLM 338 (709)
Q Consensus 259 ~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~ 338 (709)
++|++++++|.++|+++++||+++|+++|++.+++.+...+..++.+++..++++++++.++|.+++++++.+|++.++.
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999998888887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 339 LIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHST 418 (709)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 418 (709)
..+.++.++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|++..+++.+...+..+..........++..+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02857 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLS 241 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666677777889999999999999999999999999999999999988887777766666666666666666
Q ss_pred HHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccCCCC
Q 005203 419 QVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQRLMG 498 (709)
Q Consensus 419 ~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~~~~~~~~~~ 498 (709)
.++++.++++.+.+|.+|+|.++++.+|..++..++..+...+..+..+..+.+|+.++++.+++... .........+
T Consensus 242 ~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~--~~~~~~~~~~ 319 (529)
T TIGR02857 242 VALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG--KAPVTAAPAP 319 (529)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--CcCCCCCCCC
Confidence 66666778888889999999999999999999999999999999999999999999999986543221 1111111235
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|+++++.+++|++|
T Consensus 320 ~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 320 SLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred eEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 79999999999865 35899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCC
Q 005203 579 GFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDP 656 (709)
Q Consensus 579 ~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p 656 (709)
+||+|||++|+|||+|||+++.+ ++++|+++++++.++++|+|+++|+||||.+|| .+|||||||||+|||||+++|
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARP-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999976 789999999999999999999999999999998 499999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 657 TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||||||+||+++|+.|.+.|+++.+ ++|+|+||||++++.. +|
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l~~~~~----~~t~i~itH~~~~~~~-~d 524 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEALRALAQ----GRTVLLVTHRLALAER-AD 524 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHhcC----CCEEEEEecCHHHHHh-CC
Confidence 99999999999999999999999998754 4999999999999864 56
No 17
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.5e-89 Score=801.19 Aligned_cols=477 Identities=36% Similarity=0.538 Sum_probs=434.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 226 LLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRN 305 (709)
Q Consensus 226 ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~ 305 (709)
.+..+.++..+..+++..++++.+.+...++|.+.++.++|++++|||+.+.|++.+|+++|++.|++.+...+..++..
T Consensus 76 ~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~ 155 (1228)
T KOG0055|consen 76 YFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQL 155 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHH
Confidence 34455566667888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHH
Q 005203 306 VLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKR 385 (709)
Q Consensus 306 ~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r 385 (709)
+.+++..+++.|++.|+|+++++...|++++....+.+...+..++.+++.+++.+...|++.+++||.+|+.|+.+.+|
T Consensus 156 ~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~r 235 (1228)
T KOG0055|consen 156 LATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIER 235 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHH
Confidence 99999999999999999999999999999999888888888888777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 386 YKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLM 465 (709)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~ 465 (709)
|++.++...+..++..-+.++..++..++........+|+|+.+++.|..+.|.++..+.+...-...+......+..+.
T Consensus 236 y~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~ 315 (1228)
T KOG0055|consen 236 YSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFA 315 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHh
Confidence 99999999999999888888888888888888889999999999999999999876544333333334445566777888
Q ss_pred HHHHHHHHHHHHHhcCCCCcccc-ccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHH
Q 005203 466 QSVGASEKVFQLMDLMPSDQFMS-KGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTL 544 (709)
Q Consensus 466 ~~~~~~~Rl~~il~~~~e~~~~~-~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTL 544 (709)
.+..++.+++++++..|+.+... .+.......|.|||+||+|+||.+++.+||+|+||+|++||+|||||||||||||+
T Consensus 316 ~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~ 395 (1228)
T KOG0055|consen 316 KARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTL 395 (1228)
T ss_pred ccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHH
Confidence 89999999999999988754221 22233346789999999999999988899999999999999999999999999999
Q ss_pred HHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHc
Q 005203 545 VNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMS 624 (709)
Q Consensus 545 lkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~ 624 (709)
++||.|||+|++|+|+|||.|+++++.+++|++||+|.|||.||++||+|||.||+| +++++++.+|||+|++||||.+
T Consensus 396 i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~-dat~~~i~~a~k~ana~~fi~~ 474 (1228)
T KOG0055|consen 396 IQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP-DATREEIEEAAKAANAHDFILK 474 (1228)
T ss_pred HHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCC-cccHHHHHHHHHHccHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999987 9999999999999999999999
Q ss_pred CCCCcccccCCC--CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhh
Q 005203 625 LPSGYETLVDDD--LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 625 LP~GydT~vGe~--~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
||+||||.+||+ +|||||||||||||||+|+|+||+|||||||||+++|+.|+++|++.+++ +|.|+|||||||
T Consensus 475 lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~g----rTTivVaHRLSt 550 (1228)
T KOG0055|consen 475 LPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKG----RTTIVVAHRLST 550 (1228)
T ss_pred hHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcC----CeEEEEeeehhh
Confidence 999999999994 79999999999999999999999999999999999999999999998864 999999999999
Q ss_pred hhhhcC
Q 005203 703 TALSFD 708 (709)
Q Consensus 703 i~~~~~ 708 (709)
|+- +|
T Consensus 551 Irn-aD 555 (1228)
T KOG0055|consen 551 IRN-AD 555 (1228)
T ss_pred hhc-cC
Confidence 986 44
No 18
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=3.4e-86 Score=765.32 Aligned_cols=529 Identities=33% Similarity=0.494 Sum_probs=468.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 172 KMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSS-EIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANM 250 (709)
Q Consensus 172 ~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~-d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~ 250 (709)
+++++.+++++.++.+++++++.+++.+..|+++...++..... +...+.....++.++.++..++.+++.++....+.
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (571)
T TIGR02203 4 RLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSN 83 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888899999999989998887665432211 11111111112333444456677889999999999
Q ss_pred HHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005203 251 ILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMI 330 (709)
Q Consensus 251 ~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~ 330 (709)
++..++|..+|+++++.|.++|++.+.|++++|+++|++.+++.+...+..++.+++.++++++++++++|++++++++.
T Consensus 84 ~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~ 163 (571)
T TIGR02203 84 KVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVM 163 (571)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 331 CSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLC 410 (709)
Q Consensus 331 ~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (709)
.|+++++..++.+..++..++..+..++..+.+.|+++|+++||.+|.++.+.+++.+..++..+...+..+.......+
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (571)
T TIGR02203 164 LPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPI 243 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887778788888888888888999999999999999999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 005203 411 FNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKG 490 (709)
Q Consensus 411 ~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~~ 490 (709)
..++..+..++++++|++++.+|.+|+|.++++..|..++..|+..+.+.+..+.....+.+|+.++++.+++.+. ..
T Consensus 244 ~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~--~~ 321 (571)
T TIGR02203 244 TQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT--GT 321 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC--CC
Confidence 8888888888999999999999999999999999999999999999999999999999999999999987665331 11
Q ss_pred ccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC
Q 005203 491 KKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD 570 (709)
Q Consensus 491 ~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~ 570 (709)
....+..++|+++||+|+|++. ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++
T Consensus 322 ~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~ 400 (571)
T TIGR02203 322 RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT 400 (571)
T ss_pred CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC
Confidence 1112234679999999999865 368999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHH
Q 005203 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAI 648 (709)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaL 648 (709)
.+++|++|+||||||++|+|||+|||+++++++.++++++++++.+++++++.+||+||||.+|| .+|||||||||+|
T Consensus 401 ~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaL 480 (571)
T TIGR02203 401 LASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAI 480 (571)
T ss_pred HHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHH
Confidence 99999999999999999999999999999754789999999999999999999999999999998 4899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||++++|+||+||||||+||+++|+.|.+.|++..+ ++|+|+||||++.+.. +|
T Consensus 481 ARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~----~~tiIiitH~~~~~~~-~D 535 (571)
T TIGR02203 481 ARALLKDAPILILDEATSALDNESERLVQAALERLMQ----GRTTLVIAHRLSTIEK-AD 535 (571)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC----CCEEEEEehhhHHHHh-CC
Confidence 9999999999999999999999999999999998865 4999999999987644 55
No 19
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.6e-85 Score=762.68 Aligned_cols=531 Identities=28% Similarity=0.357 Sum_probs=448.9
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHH--HHHHHHHHHHHHHHHHHHHH
Q 005203 165 TLWRALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SEIAVFH--RNVRLLILLCVTSGICSGLR 241 (709)
Q Consensus 165 ~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~-~d~~~~~--~~~~ll~~l~~~~~~~~~lr 241 (709)
.+|+.++++..+.+++++.+...++++++.+++.+..|+++...++.... .+..... ....+++++.++..++.+++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (592)
T PRK10790 6 QLWPTLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQ 85 (592)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777778888888888888888899999999999998877653321 1111100 00111122223345567788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005203 242 GCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSW 321 (709)
Q Consensus 242 ~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~ 321 (709)
++.......++..++|.++|+++++.|+++|++++.|++++|+++|++.+++.+...+..++.+++.++++++++++++|
T Consensus 86 ~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (592)
T PRK10790 86 SLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDW 165 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Q 005203 322 PLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQS 401 (709)
Q Consensus 322 ~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~ 401 (709)
+++++.++++|+.+++..++.+..++..++..+..++.++++.|+++|+++||+||.|+.+.+++.+..++..+...+..
T Consensus 166 ~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (592)
T PRK10790 166 RMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTL 245 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888877776667677677777777777888999999999999999999999999999998888777666655
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005203 402 AAYGFW-NLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDL 480 (709)
Q Consensus 402 ~~~~~~-~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~ 480 (709)
+..... ..+..++..+..++++++++. +..|.+|+|.+++++.|...+..|+..+...+..+.....+.+|+.++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~ 324 (592)
T PRK10790 246 RLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDG 324 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444432 233334444443444444444 689999999999999999999999999999999999999999999999987
Q ss_pred CCCCccccccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEE
Q 005203 481 MPSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQIL 560 (709)
Q Consensus 481 ~~e~~~~~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~ 560 (709)
++++. ... ..+...++|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|+
T Consensus 325 ~~~~~--~~~-~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 325 PRQQY--GND-DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred CCccC--CCC-ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 65432 111 11223467999999999984 25799999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCC
Q 005203 561 IDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLL 638 (709)
Q Consensus 561 idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~L 638 (709)
+||+|+++++.+++|++|+||||||+||+|||+|||++|+ ++++++++++++.+|++++|++||+||||.+|| .+|
T Consensus 400 idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~L 477 (592)
T PRK10790 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477 (592)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 9999999999999999999999999999999999999994 689999999999999999999999999999999 489
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 639 SGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 639 SGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||||||+|||||+++|+|||||||||+||+++|+.|.+.|+++.+ ++|+|+||||++++.. +|
T Consensus 478 SGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~----~~tvIivtHr~~~l~~-~D 542 (592)
T PRK10790 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE----HTTLVVIAHRLSTIVE-AD 542 (592)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC----CCEEEEEecchHHHHh-CC
Confidence 99999999999999999999999999999999999999999998864 4999999999998875 55
No 20
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.6e-84 Score=753.67 Aligned_cols=531 Identities=24% Similarity=0.335 Sum_probs=452.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 168 RALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGI 247 (709)
Q Consensus 168 ~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~ 247 (709)
+.++++++++++++..+...++++++..++.+..|+++...++...... .......++.++.++..+..++..+....
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (588)
T PRK13657 5 RLYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG--DIFPLLAAWAGFGLFNIIAGVLVARHADR 82 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778888888888888899999999999998887765332111 01001111111222222334445555555
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005203 248 ANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCT 327 (709)
Q Consensus 248 ~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~ 327 (709)
...++..+++.++|+|++++|+++|++.+.|++++|+++|++.+.+.+...+...+..++..++.+++++.++|++++++
T Consensus 83 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 162 (588)
T PRK13657 83 LAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVL 162 (588)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677778999999999999999999999999999999999988888888888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 328 LMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFW 407 (709)
Q Consensus 328 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 407 (709)
++.+++++++...+.+..++..++..+..++.++.+.|.++|+++||.||.++.+.+++.+..++..+...+..+.....
T Consensus 163 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (588)
T PRK13657 163 VVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALA 242 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888877777777777777777778889999999999999999999999999999999999988887777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 005203 408 NLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFM 487 (709)
Q Consensus 408 ~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~ 487 (709)
..+..++..+..++++++|++++.+|++|+|++++++.|...+..++..+...+..+..+..+.+|+.++++.+++.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 322 (588)
T PRK13657 243 SVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP 322 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 77777777788889999999999999999999999999999999999999999999999999999999998875543211
Q ss_pred cccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC
Q 005203 488 SKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK 567 (709)
Q Consensus 488 ~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~ 567 (709)
.+....+...+.|+++||+|+|+++ +++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|++
T Consensus 323 ~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~ 400 (588)
T PRK13657 323 PGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIR 400 (588)
T ss_pred CCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhh
Confidence 1111112234579999999999853 57999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHH
Q 005203 568 EVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQR 645 (709)
Q Consensus 568 ~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQR 645 (709)
+++.+++|++|+||||||+||+|||+|||+++++ ++++|+++++++.++++++|.++|+||||.+|+ .+||||||||
T Consensus 401 ~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QR 479 (588)
T PRK13657 401 TVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQR 479 (588)
T ss_pred hCCHHHHHhheEEEecCcccccccHHHHHhcCCC-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHH
Confidence 9999999999999999999999999999999976 889999999999999999999999999999998 4899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+|||||+++|+|||||||||+||+++|+.|.+.|+++.+ ++|+|+||||++++.. +|
T Consensus 480 ialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~----~~tvIiitHr~~~~~~-~D 537 (588)
T PRK13657 480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK----GRTTFIIAHRLSTVRN-AD 537 (588)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc----CCEEEEEEecHHHHHh-CC
Confidence 9999999999999999999999999999999999988754 4999999999998754 66
No 21
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=4.6e-84 Score=748.33 Aligned_cols=532 Identities=24% Similarity=0.323 Sum_probs=454.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 167 WRALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFG 246 (709)
Q Consensus 167 ~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~ 246 (709)
++.+++++++++++++.++..++++++..++.++.|++++..++.....+.. .. ....+++..++..+..+++.+...
T Consensus 4 ~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 81 (585)
T TIGR01192 4 FQVYVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDV-LP-TLALWAGFGVFNTIAYVLVAREAD 81 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788899999999999999999999999999988887543221111 00 011111112223334444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005203 247 IANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLC 326 (709)
Q Consensus 247 ~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv 326 (709)
.+..++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+...+..+++.++++++|+.+||.++++
T Consensus 82 ~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 161 (585)
T TIGR01192 82 RLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIV 161 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777899999999999999999999999999999999999998888888888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 327 TLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGF 406 (709)
Q Consensus 327 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~ 406 (709)
+++.+|+++++...+.+..++..++..+..++..+.+.|+++|+++||+||.|+.+.+++.+..++..+...+..+....
T Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (585)
T TIGR01192 162 LMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWAL 241 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777777777777777777788999999999999999999999999999999999888877777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 005203 407 WNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQF 486 (709)
Q Consensus 407 ~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~ 486 (709)
...+..++..+..++++++|++++.+|++|+|.+++++.|...+..++..+.+.+..+..+..+.+|+.++++.+++.+.
T Consensus 242 ~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 321 (585)
T TIGR01192 242 ASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE 321 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 66666677777788899999999999999999999999999999999999999999999999999999999987654321
Q ss_pred ccccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC
Q 005203 487 MSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI 566 (709)
Q Consensus 487 ~~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di 566 (709)
.......+...+.|+++||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+
T Consensus 322 ~~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 399 (585)
T TIGR01192 322 PADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDI 399 (585)
T ss_pred CccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEh
Confidence 11111112234579999999999853 4699999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHH
Q 005203 567 KEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (709)
Q Consensus 567 ~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (709)
++++.+++|++++||+||+++|++||+|||+++.+ ++++++++++++.+++++++.++|+||||.+|+ .+|||||||
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~q 478 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE-GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQ 478 (585)
T ss_pred hhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHH
Confidence 99999999999999999999999999999999976 789999999999999999999999999999998 499999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+|||||+++|++||||||||+||+++|+.+.+.|+++.+ ++|+|+||||++++.. +|
T Consensus 479 rl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~----~~tvI~isH~~~~~~~-~d 537 (585)
T TIGR01192 479 RLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRK----NRTTFIIAHRLSTVRN-AD 537 (585)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhC----CCEEEEEEcChHHHHc-CC
Confidence 99999999999999999999999999999999999988764 4999999999999865 55
No 22
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=4.8e-84 Score=748.13 Aligned_cols=534 Identities=33% Similarity=0.514 Sum_probs=461.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 169 ALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQ-SSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGI 247 (709)
Q Consensus 169 ~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~-~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~ 247 (709)
.+++++++.+++++.+...++++++..++.++.|++++..++... ..+...+.....+++++.+...++.+++.++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 5 PLAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888888899999999999999887765422 1111111111222222233345567788888899
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005203 248 ANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCT 327 (709)
Q Consensus 248 ~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~ 327 (709)
++.++..++|..+|++++++|.++|++.+.||+++|+++|++.+++++...+..++.++++.++++++++.++|++++++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 328 LMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFW 407 (709)
Q Consensus 328 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 407 (709)
++.+|+++++..++.+..++..++..+..++..+.+.|.++|+++||+++.|+++.+++.+..++..+...+..+....+
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888887777777777777777777778899999999999999999999999999999999998888777766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 005203 408 NLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFM 487 (709)
Q Consensus 408 ~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~ 487 (709)
..+...+..+..++++++|++++.+|.+|+|+++++..|..++..++..+...+.++..+..+.+|+.++++.+++.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 66666666667778889999999999999999999999999999999999999999999999999999999876542211
Q ss_pred ccccc-ccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC
Q 005203 488 SKGKK-LQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI 566 (709)
Q Consensus 488 ~~~~~-~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di 566 (709)
..... ..+..+.|+++||+|+|++++++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|+
T Consensus 325 ~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i 404 (576)
T TIGR02204 325 AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL 404 (576)
T ss_pred CCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEH
Confidence 11111 11223579999999999864336799999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHH
Q 005203 567 KEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (709)
Q Consensus 567 ~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (709)
++++.+++|++|+||||||++|+|||+|||+++++ +.++|+++++++.+++++++.++|+|+||.+|| .+|||||||
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLFAASVMENIRYGRP-DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HhcCHHHHHHhceEEccCCccccccHHHHHhcCCC-CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 99999999999999999999999999999999976 788999999999999999999999999999998 489999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+||||++++|++||||||||+||+++|+.|.+.|+++.+ ++|+|+||||++.+.. +|
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~----~~t~IiitH~~~~~~~-~d 542 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK----GRTTLIIAHRLATVLK-AD 542 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC----CCEEEEEecchHHHHh-CC
Confidence 99999999999999999999999999999999999998764 4999999999988754 56
No 23
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9.6e-83 Score=735.62 Aligned_cols=509 Identities=28% Similarity=0.422 Sum_probs=435.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 005203 191 LIIAALSEIFIPHFLTASIFTAQSS--EIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQD 268 (709)
Q Consensus 191 ~l~~~~~~l~~P~~~~~~i~~~~~~--d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp 268 (709)
.++..++.++.|++++..++..... +...+.....+++++.++..++.+++.+.....+.++..++|.++|+|++++|
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4556667778898888776543211 11001111111222233445567777888888899999999999999999999
Q ss_pred chhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 269 ISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYL-IVLSWPLGLCTLMICSALAGLMLIYGLYQKK 347 (709)
Q Consensus 269 ~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m-~~~s~~Lalv~l~~~~l~~~i~~~~~~~~~~ 347 (709)
+++|+++++|++++|+++|++.++..+...+..++..+++.+++++++ +.++|++++++++.+|+++++...+.+..++
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887777777776666666666666 5899999999999888888877777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 348 AAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGG 427 (709)
Q Consensus 348 ~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~vl~~ga 427 (709)
..++.++..++.++.+.|+++|+++||+||.|+.+.+||.+..++..+...+..+..+.+......+..+..++++++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888999999999999999999999999999999999888888877766776666666666777788899999
Q ss_pred HHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccCCCCcEEEEEEEE
Q 005203 428 MFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSF 507 (709)
Q Consensus 428 ~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~~~~~~~~~~~I~~~nVsF 507 (709)
+++.+|++|+|.++++..|..++..|+..+...+..+..+..+.+|+.++++.+++.+. .....+...+.|+++||+|
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~--~~~~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD--GSEPVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC--CCCCCCCCCCcEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999987665321 1111222345799999999
Q ss_pred EcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcc
Q 005203 508 RYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKL 587 (709)
Q Consensus 508 ~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~L 587 (709)
+|++. +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|+|+|
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99864 36799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 005203 588 FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEAT 665 (709)
Q Consensus 588 F~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaT 665 (709)
|+|||+|||+++++ ++++++++++++.+++++++.++|+||||.+|+ .+|||||||||+|||||+++|+||||||||
T Consensus 401 f~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 401 FSDTVANNIALGRP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred ccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 99999999999976 789999999999999999999999999999999 489999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 666 SALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 666 SaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+||+++|+.+.+.|+++.+ ++|+|+||||++++.. +|
T Consensus 480 s~LD~~~~~~i~~~l~~~~~----~~tii~itH~~~~~~~-~d 517 (569)
T PRK10789 480 SAVDGRTEHQILHNLRQWGE----GRTVIISAHRLSALTE-AS 517 (569)
T ss_pred ccCCHHHHHHHHHHHHHHhC----CCEEEEEecchhHHHc-CC
Confidence 99999999999999988754 5999999999998764 44
No 24
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.9e-81 Score=721.50 Aligned_cols=517 Identities=23% Similarity=0.281 Sum_probs=438.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 178 SKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQ-SSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRM 256 (709)
Q Consensus 178 ~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~-~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~l 256 (709)
+++++.+...++++++..++.++.|++++..++... ..+...+......++++.++..++.+++.++....+.++..++
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888999999999999888775332 1111111111112223334456678889999999999999999
Q ss_pred HHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005203 257 RETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAG 336 (709)
Q Consensus 257 r~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~ 336 (709)
|.++|+|++++|+. +.++..+++.+|++.+++.+.......+.+.+..++.+++|+.++|++++++++.+|++++
T Consensus 82 r~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~ 156 (544)
T TIGR01842 82 NQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAVVLVG 156 (544)
T ss_pred HHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999984 2366788999999999998877444444455455556678999999999999988888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 337 LMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYH 416 (709)
Q Consensus 337 i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 416 (709)
+..++.+..++..++.++..++.++.+.|+++|+++||+||.|+.+.++|.+..++..+...+..+..+....+...+..
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (544)
T TIGR01842 157 LALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRI 236 (544)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666677777778889999999999999999999999999999999999888877777666666666667777
Q ss_pred HHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccCC
Q 005203 417 STQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQRL 496 (709)
Q Consensus 417 ~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~~~~~~~~ 496 (709)
+..++++++|++++.+|++|+|.+++++.|...+..++..+...+..+..+..+.+|+.++++.+++... . ...+..
T Consensus 237 ~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~--~-~~~~~~ 313 (544)
T TIGR01842 237 VLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP--A-MPLPEP 313 (544)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC--C-CCCCCC
Confidence 7778889999999999999999999999999999999999999999999999999999999987665321 1 111223
Q ss_pred CCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhc
Q 005203 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG 576 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~ 576 (709)
.+.|+++||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|+
T Consensus 314 ~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 314 EGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred CCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhh
Confidence 4579999999999854 368999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcc
Q 005203 577 RIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 577 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr 654 (709)
+|+||+|||++|++||+|||+++++ ++++++++++++.++++++++++|+||||.+|| .+|||||||||+|||||++
T Consensus 393 ~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 393 HIGYLPQDVELFPGTVAENIARFGE-NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred heEEecCCcccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998865 789999999999999999999999999999999 4999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 655 DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++||||||||+||+++|+.+.+.|+++..+ ++|+|+||||++++. .+|
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~---~~tvi~ith~~~~~~-~~d 521 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKAR---GITVVVITHRPSLLG-CVD 521 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHhhC---CCEEEEEeCCHHHHH-hCC
Confidence 99999999999999999999999999887521 589999999999765 455
No 25
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-85 Score=696.08 Aligned_cols=504 Identities=27% Similarity=0.409 Sum_probs=414.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH-HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 191 LIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLL-ILLCV------TSGICSGLRGCCFGIANMILVKRMRETLYSA 263 (709)
Q Consensus 191 ~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll-~~l~~------~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~ 263 (709)
.++.-++.+..|.+..+.++.....+. +..+..++ +.+.+ +.+.++-+|+++...+++-...++..++|+|
T Consensus 224 l~i~rli~~~~pi~~k~iv~~ltap~~--~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrH 301 (790)
T KOG0056|consen 224 LIIGRLINVSLPILSKWIVDELTAPDT--FQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRH 301 (790)
T ss_pred HHHHHHHhhhhHHhHHHHHHhhcCcch--hhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHH
Confidence 334455666788887777654432221 11112111 11212 2345677888888888888889999999999
Q ss_pred HHcCCchhhccCCHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005203 264 LLLQDISFFDSETVGDLTSRLGSDCQQVS--RVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIY 341 (709)
Q Consensus 264 Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~--~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~ 341 (709)
+..+.+.|.-.|++|+++.-+....+.+. +.+.-.+.+.+.|+..+++. +...++||.++++++.+.+|+.+....
T Consensus 302 lh~LSlrwHL~rrtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~vY--F~~~Fn~wFgLIVfl~m~lY~~~Ti~i 379 (790)
T KOG0056|consen 302 LHNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMVY--FFIKFNIWFGLIVFLMMLLYCYVTIKI 379 (790)
T ss_pred HHhhceeeeecccccceeehhccCcchhhHHHHHHhhcccHHHHhhhhhhh--hhhhHhHHHHHHHHHHHHHHhheeeee
Confidence 99999999999999999877765433333 33333334444454433332 333589999999999999998884433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 342 GLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVI 421 (709)
Q Consensus 342 ~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 421 (709)
...+.+.+++...+..+..+...+++-+.+|||-||+|+++.+||.+...++.+...+......+.+...+.+.++..++
T Consensus 380 TeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~ 459 (790)
T KOG0056|consen 380 TEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLA 459 (790)
T ss_pred ehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhh
Confidence 33344444444443444455667888899999999999999999999999988877776655666777777777777777
Q ss_pred HHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccCCCCcEE
Q 005203 422 AVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQRLMGRID 501 (709)
Q Consensus 422 vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~~~~~~~~~~~I~ 501 (709)
.-.+.+|+|..|.+|+|+.+-|..|..|+.+|+..++..+..++.....+|+++|+++++||..+.++..+.....|.|+
T Consensus 460 gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~ 539 (790)
T KOG0056|consen 460 GSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIE 539 (790)
T ss_pred hhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEE
Confidence 77788889999999999999999999999999999999999999999999999999999988653333333344578999
Q ss_pred EEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEE
Q 005203 502 FVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFV 581 (709)
Q Consensus 502 ~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V 581 (709)
|+||+|.|++ ++++|+|+||+++||+++|+|||||+||||++++|.|||+.++|.|.|||+||+++...++|++||+|
T Consensus 540 fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVV 617 (790)
T KOG0056|consen 540 FSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVV 617 (790)
T ss_pred EEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcc
Confidence 9999999985 47999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCC--CCChHHHHHHHHHHHhccCCCEE
Q 005203 582 GQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD--LLSGGQKQRIAIARAILRDPTIL 659 (709)
Q Consensus 582 ~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~--~LSGGQkQRIaLARALlr~p~IL 659 (709)
|||..||++||.+||.|+.| ++++||+.+|||.|++||-|.++|+||+|.|||+ .||||+|||+||||+++|+|.|+
T Consensus 618 PQDtvLFNdTI~yNIryak~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iI 696 (790)
T KOG0056|consen 618 PQDTVLFNDTILYNIRYAKP-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSII 696 (790)
T ss_pred cCcceeecceeeeheeecCC-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEE
Confidence 99999999999999999987 9999999999999999999999999999999994 89999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 660 ILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 660 ILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
+|||||||||..||+.|+.++.++.+ ++|.|+||||+|||.-
T Consensus 697 lLDEATSALDT~tER~IQaaL~rlca----~RTtIVvAHRLSTivn 738 (790)
T KOG0056|consen 697 LLDEATSALDTNTERAIQAALARLCA----NRTTIVVAHRLSTIVN 738 (790)
T ss_pred EEcchhhhcCCccHHHHHHHHHHHhc----CCceEEEeeeehheec
Confidence 99999999999999999999999875 4999999999999853
No 26
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-82 Score=685.35 Aligned_cols=529 Identities=29% Similarity=0.397 Sum_probs=438.8
Q ss_pred HHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccchh--HHHHHH---HHHHHHHHHHHHHHHHH
Q 005203 167 WRALGKMWDLVSKDRWIIF-AAFSALIIAALSEIFIPHFLTASIFTAQSSEI--AVFHRN---VRLLILLCVTSGICSGL 240 (709)
Q Consensus 167 ~~~~~~l~~~~~~~~~~l~-~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~--~~~~~~---~~ll~~l~~~~~~~~~l 240 (709)
+++..+.|..-++..+... .++++.+.+-++.+.+|+++...++.....|. ..+... ..-..+.-++..+++.+
T Consensus 14 ~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el 93 (591)
T KOG0057|consen 14 RSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNEL 93 (591)
T ss_pred HHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344443333334333333 33334444457888899998777655421111 112111 11222334456678889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 005203 241 RGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGAL-IYLIVL 319 (709)
Q Consensus 241 r~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~l-i~m~~~ 319 (709)
+..++.++.++.....-.++|+|++.++.++|.++.+|++.+.+..-+..|+..+...+..++..++-..... .+-.-+
T Consensus 94 ~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~ 173 (591)
T KOG0057|consen 94 RNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKF 173 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988899888777766665554333332 333346
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 005203 320 SWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLR 399 (709)
Q Consensus 320 s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~ 399 (709)
.+..++++++.+..|....+....++.+..+++..+..+....+.|++.+.++||.||.|++|.+||...+..+.+.+.+
T Consensus 174 Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~ 253 (591)
T KOG0057|consen 174 GAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLK 253 (591)
T ss_pred chHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhh
Confidence 77888888888888887755555666677777777778888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005203 400 QSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMD 479 (709)
Q Consensus 400 ~~~~~~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~ 479 (709)
.....++.+.....++......+.++|..-+.+|.+|+|+++....+..|+..++..++..+.++.+....++.++...+
T Consensus 254 ~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~ 333 (591)
T KOG0057|consen 254 YSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLE 333 (591)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 88888888888899998888889999988899999999999999999999999999999999999998888877776544
Q ss_pred cCCCCccccccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE
Q 005203 480 LMPSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI 559 (709)
Q Consensus 480 ~~~e~~~~~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I 559 (709)
.....++ ...++....+.|+|+||+|.|++ +++||+++||+|++||+|||||+|||||||++++|+||++ ++|+|
T Consensus 334 ~~~~i~~--~~~~i~~~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I 408 (591)
T KOG0057|consen 334 VDEDIQE--AALPIELFGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSI 408 (591)
T ss_pred hhhhhhh--ccCCcccCCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcE
Confidence 3322221 11122334578999999999985 3689999999999999999999999999999999999999 99999
Q ss_pred EECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCC--C
Q 005203 560 LIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD--L 637 (709)
Q Consensus 560 ~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~--~ 637 (709)
+|||+|+++++++++|+.|||||||..||++||.+||.||++ ++++|++.++||.|++||-|+++|+||+|.|||+ .
T Consensus 409 ~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~-sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~ 487 (591)
T KOG0057|consen 409 LIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNP-SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLM 487 (591)
T ss_pred EECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCC-CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccc
Confidence 999999999999999999999999999999999999999998 9999999999999999999999999999999994 8
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 638 LSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 638 LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
||||||||++||||++|+|||+++|||||+||.+||+.|.+++.... .++|+|+|+||++|+..
T Consensus 488 LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~----~~rTvI~IvH~l~ll~~ 551 (591)
T KOG0057|consen 488 LSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM----SGRTVIMIVHRLDLLKD 551 (591)
T ss_pred cccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc----CCCeEEEEEecchhHhc
Confidence 99999999999999999999999999999999999999999998743 36999999999998764
No 27
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-80 Score=678.71 Aligned_cols=474 Identities=24% Similarity=0.335 Sum_probs=421.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 227 LILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNV 306 (709)
Q Consensus 227 l~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~ 306 (709)
+.++.++.+++.+.+.++....+..+..++|+.+++++.++++.+-.+.++|+..+.+...++.++.+++..++..+...
T Consensus 46 l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ 125 (559)
T COG4988 46 LLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSA 125 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHH
Q 005203 307 LQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRY 386 (709)
Q Consensus 307 l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~ 386 (709)
+.....++.++++||.-++|.++.+|++.+.+++.+...++..++..+..+..+++|.|.++|+.|+|.||..+...++.
T Consensus 126 ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i 205 (559)
T COG4988 126 IVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERI 205 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHH
Confidence 99999999999999999999999999999998888888888877777778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 387 KHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMR-GNITAEQLTKFILYSEWLIYSTWWVGDNLSSLM 465 (709)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~vl~~ga~lV~~-G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~ 465 (709)
.+..+++++..++.-+..-....+..++..+...++..+.+...+. |++|....+.++...--|..|+..++..++.-+
T Consensus 206 ~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~ 285 (559)
T COG4988 206 RKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAA 285 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 9999999998888765555555666776666555554444455556 899998887777777888899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcccccccccc-CCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHH
Q 005203 466 QSVGASEKVFQLMDLMPSDQFMSKGKKLQ-RLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTL 544 (709)
Q Consensus 466 ~~~~~~~Rl~~il~~~~e~~~~~~~~~~~-~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTL 544 (709)
....+.+.+..+++.+++........... ..+.+|+.+|++|+|++. +++++|+||+++|||++||||+||||||||
T Consensus 286 ~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTL 363 (559)
T COG4988 286 AGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTL 363 (559)
T ss_pred hhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHH
Confidence 99999999999999877644211110111 122345556999999964 489999999999999999999999999999
Q ss_pred HHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHc
Q 005203 545 VNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMS 624 (709)
Q Consensus 545 lkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~ 624 (709)
+++|+|+++|++|+|.+||+|+++++.++||+++++|+|+|+||+|||||||+++++ +++||++.+|++.+++.||+..
T Consensus 364 l~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~-~~s~e~i~~al~~a~l~~~v~~ 442 (559)
T COG4988 364 LNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARP-DASDEEIIAALDQAGLLEFVPK 442 (559)
T ss_pred HHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCC-cCCHHHHHHHHHHhcHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999987 8999999999999999999999
Q ss_pred CCCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhh
Q 005203 625 LPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 625 LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
|+|+||.+|| .+|||||+||+++||||++++++++|||||||||.|||+.|.++|.++.++ +|+|+||||++.
T Consensus 443 -p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~----ktvl~itHrl~~ 517 (559)
T COG4988 443 -PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ----KTVLVITHRLED 517 (559)
T ss_pred -CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC----CeEEEEEcChHH
Confidence 9999999999 499999999999999999999999999999999999999999999999875 999999999986
Q ss_pred hhhhcCC
Q 005203 703 TALSFDC 709 (709)
Q Consensus 703 i~~~~~~ 709 (709)
+ ..+||
T Consensus 518 ~-~~~D~ 523 (559)
T COG4988 518 A-ADADR 523 (559)
T ss_pred H-hcCCE
Confidence 4 45565
No 28
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.7e-80 Score=779.85 Aligned_cols=507 Identities=21% Similarity=0.300 Sum_probs=417.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 005203 189 SALIIAALSEIFIPHFLTASIFTAQ-SSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQ 267 (709)
Q Consensus 189 ~~~l~~~~~~l~~P~~~~~~i~~~~-~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~l 267 (709)
++.++..++.++.|+++..+..... ..+..........+.++.++..++.+++.++....+.+...++|.++|+++++.
T Consensus 972 ~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~ 1051 (1522)
T TIGR00957 972 FLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRS 1051 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344455566677777766543211 000000011122333444555667777888888889999999999999999999
Q ss_pred CchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 268 DISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKK 347 (709)
Q Consensus 268 p~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~~~~~~~ 347 (709)
|++||++.++|++++|+++|++.+++.+...+..++..++..++.++++++.+|+++++++..++++.++..+|.+..+.
T Consensus 1052 p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 1131 (1522)
T TIGR00957 1052 PMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQ 1131 (1522)
T ss_pred ChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988777666666666555566565666
Q ss_pred HHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 348 AAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGG 427 (709)
Q Consensus 348 ~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~vl~~ga 427 (709)
..+...+..+...+++.|+++|+++||+||.|+++.+++.+..+...+..........++.....++ ..++++++|+
T Consensus 1132 ~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 1208 (1522)
T TIGR00957 1132 LKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECV---GNCIVLFAAL 1208 (1522)
T ss_pred HHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 5666666678889999999999999999999998888887777766665444433333443333333 2334555666
Q ss_pred HHHH-hCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc-cccc--CCCCcEEEE
Q 005203 428 MFIM-RGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKG-KKLQ--RLMGRIDFV 503 (709)
Q Consensus 428 ~lV~-~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~~-~~~~--~~~~~I~~~ 503 (709)
..+. .|.+++|.+++++.|..++..++..++..+.++.....+.+|+.++.+.++|.+...++ .+++ +..|.|+|+
T Consensus 1209 ~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~ 1288 (1522)
T TIGR00957 1209 FAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFR 1288 (1522)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEE
Confidence 6665 58899999999999999999999999999999999999999999999887764311111 1111 245789999
Q ss_pred EEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcc
Q 005203 504 DVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQ 583 (709)
Q Consensus 504 nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Q 583 (709)
||+|+|+++ .+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||+|+++++++++|++|++|||
T Consensus 1289 nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQ 1367 (1522)
T TIGR00957 1289 NYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQ 1367 (1522)
T ss_pred EEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECC
Confidence 999999865 3689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEE
Q 005203 584 EPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILIL 661 (709)
Q Consensus 584 d~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILIL 661 (709)
||+||+|||||||..+ . +++||++++|++.|+++|+|.++|+||||.||| .+|||||||||||||||+|+|+||||
T Consensus 1368 dp~LF~gTIr~NLdp~-~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiL 1445 (1522)
T TIGR00957 1368 DPVLFSGSLRMNLDPF-S-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVL 1445 (1522)
T ss_pred CCcccCccHHHHcCcc-c-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999965 2 689999999999999999999999999999999 59999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 662 DEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 662 DEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
|||||+||.+||+.|+++|++..+ ++|+|+||||++|+..
T Consensus 1446 DEaTSalD~~Te~~Iq~~l~~~~~----~~TvI~IAHRl~ti~~ 1485 (1522)
T TIGR00957 1446 DEATAAVDLETDNLIQSTIRTQFE----DCTVLTIAHRLNTIMD 1485 (1522)
T ss_pred ECCcccCCHHHHHHHHHHHHHHcC----CCEEEEEecCHHHHHh
Confidence 999999999999999999988764 4999999999999876
No 29
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=8.3e-80 Score=766.80 Aligned_cols=525 Identities=28% Similarity=0.412 Sum_probs=452.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 178 SKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMR 257 (709)
Q Consensus 178 ~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr 257 (709)
+.+++.++.+++++++..++..+.|.+++..++.....+. ......++++++++..++.+++.++..+++.++..++|
T Consensus 56 ~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR 133 (1466)
T PTZ00265 56 ASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN--VNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLK 133 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888888888888887777654311111 11112234445555677889999999999999999999
Q ss_pred HHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005203 258 ETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGL 337 (709)
Q Consensus 258 ~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i 337 (709)
.++|+|++++|.+||++...|++.+|+++|++.+++.+...+..++.++++++++++++|++||.|++++++.+|+++++
T Consensus 134 ~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~ 213 (1466)
T PTZ00265 134 LEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYIC 213 (1466)
T ss_pred HHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 338 MLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHS 417 (709)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 417 (709)
..++.+..++..+..++..++..+.+.|++.|+++||+|+.|+.+.+||.+..+...+...+.....++...+..++..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 293 (1466)
T PTZ00265 214 GVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILA 293 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87888888777777777778999999999999999999999999999999999888888888877777777777777778
Q ss_pred HHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 005203 418 TQVIAVLIGGMFIMRG--------NITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSK 489 (709)
Q Consensus 418 ~~i~vl~~ga~lV~~G--------~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~ 489 (709)
..++++|+|++++.+| .+|+|.+++++.+.......+..+...+..+..+..+.+|+.++++.+++.+....
T Consensus 294 ~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~ 373 (1466)
T PTZ00265 294 SYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDD 373 (1466)
T ss_pred HHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 8889999999999986 58999998887765554445555666778889999999999999998776432111
Q ss_pred cccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE-CCEeCCC
Q 005203 490 GKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI-DGFPIKE 568 (709)
Q Consensus 490 ~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~i-dG~di~~ 568 (709)
+...+. .+.|+|+||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++ ||.|+++
T Consensus 374 ~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~ 452 (1466)
T PTZ00265 374 GKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKD 452 (1466)
T ss_pred CccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhh
Confidence 122222 24799999999998654457999999999999999999999999999999999999999999999 5799999
Q ss_pred CCHHHHhcceEEEcccCcccccCHHHHhccCCC-----------------------------------------------
Q 005203 569 VDIKWLRGRIGFVGQEPKLFRMDISSNISYGCT----------------------------------------------- 601 (709)
Q Consensus 569 ~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~----------------------------------------------- 601 (709)
++..++|++||||+|+|.||++||+|||.+|..
T Consensus 453 ~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (1466)
T PTZ00265 453 INLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSN 532 (1466)
T ss_pred CCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchh
Confidence 999999999999999999999999999999731
Q ss_pred ---------CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 005203 602 ---------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDA 670 (709)
Q Consensus 602 ---------~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~ 670 (709)
++++++++++||+.+++++||.+||+||||.+|+ .+|||||||||+|||||+++|+|||||||||+||+
T Consensus 533 ~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~ 612 (1466)
T PTZ00265 533 ELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDN 612 (1466)
T ss_pred hhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 1357899999999999999999999999999998 49999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 671 ESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 671 ~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|+.|++.|+++.++ .|+|+|+||||++++. -+|
T Consensus 613 ~se~~i~~~L~~~~~~--~g~TvIiIsHrls~i~-~aD 647 (1466)
T PTZ00265 613 KSEYLVQKTINNLKGN--ENRITIIIAHRLSTIR-YAN 647 (1466)
T ss_pred HHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHH-hCC
Confidence 9999999999988531 2589999999999985 465
No 30
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=2.9e-79 Score=704.49 Aligned_cols=520 Identities=18% Similarity=0.173 Sum_probs=425.6
Q ss_pred HHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 170 LGKMWDLVS-KDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIA 248 (709)
Q Consensus 170 ~~~l~~~~~-~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~ 248 (709)
+++++++++ ++++.++.+++++++.+++.+..|.+++..+......+. ....+++++.++..++.+++.++....
T Consensus 5 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (555)
T TIGR01194 5 IGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQ----GSLFSFGGLCLLALLFRIGADIFPAYA 80 (555)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666788 899999999999999999999999888766542211110 112223444555667788899999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005203 249 NMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTL 328 (709)
Q Consensus 249 ~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l 328 (709)
+.++..++|.++|+|++++|++||+++++||+++|+++|++.+++++.. +...+.++++.++++++|+++||.++++++
T Consensus 81 ~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l 159 (555)
T TIGR01194 81 GMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITI 159 (555)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998864 777888888889999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 329 MICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEK--QEVKRYKHWLGKLADINLRQSAAYGF 406 (709)
Q Consensus 329 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~--~~~~r~~~~~~~~~~~~~~~~~~~~~ 406 (709)
+.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.++ .+.+++.+..+++.+...+..+....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
T TIGR01194 160 SAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIA 239 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 8888877766555555556666666667889999999999999999999954 55677877777777766554444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--
Q 005203 407 WNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSD-- 484 (709)
Q Consensus 407 ~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~-- 484 (709)
...+..++..+...+++++|++. |.+|+|++++|+.|..++..|+..+...+..+..+..+.+|+.++++.++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~ 316 (555)
T TIGR01194 240 AENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEP 316 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 33333333333333344444443 7999999999999999999999999999999999999999999998642211
Q ss_pred cc--ccccc----cccCCCCcEEEEEEEEEcCCCC--CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc
Q 005203 485 QF--MSKGK----KLQRLMGRIDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN 556 (709)
Q Consensus 485 ~~--~~~~~----~~~~~~~~I~~~nVsF~Y~~~~--~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~ 556 (709)
.. ...+. ......+.|+++||+|+|++.+ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~ 396 (555)
T TIGR01194 317 ELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE 396 (555)
T ss_pred cccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 10 00010 1112245799999999998532 2469999999999999999999999999999999999999999
Q ss_pred ceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCC
Q 005203 557 GQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD 636 (709)
Q Consensus 557 G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~ 636 (709)
|+|++||+|+++++.+++|++|++|+||++||++|++||+ .+ ++++++++++++.+++++++.++|+||||. .
T Consensus 397 G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~-~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~---~ 469 (555)
T TIGR01194 397 GEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GE-HASLDNAQQYLQRLEIADKVKIEDGGFSTT---T 469 (555)
T ss_pred cEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---cc-chhHHHHHHHHHHcCCchhhcccccccCCc---c
Confidence 9999999999999999999999999999999999999995 24 788999999999999999999999999995 7
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH-HhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 637 LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLR-AVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 637 ~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~-~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||||||+||||++++|+|||||||||+||+++|+.|.+.+. .++. .++|+|+||||++++. -+|
T Consensus 470 ~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~---~~~tiiiisH~~~~~~-~~d 538 (555)
T TIGR01194 470 ALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR---QGKTIIIISHDDQYFE-LAD 538 (555)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh---CCCEEEEEeccHHHHH-hCC
Confidence 899999999999999999999999999999999999999998764 3432 2599999999999875 455
No 31
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.5e-79 Score=765.21 Aligned_cols=509 Identities=23% Similarity=0.307 Sum_probs=389.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 183 IIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYS 262 (709)
Q Consensus 183 ~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~ 262 (709)
.+...+++.++..++.++.|++++.+.......... .......+.+++++..++.+++.++....+.+...++|.++|+
T Consensus 916 ~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~-~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~ 994 (1622)
T PLN03130 916 VVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHG-PLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLG 994 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455556666677777776654322111110 0111222334455566778889999999999999999999999
Q ss_pred HHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHH
Q 005203 263 ALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALA-GLMLIY 341 (709)
Q Consensus 263 ~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~-~i~~~~ 341 (709)
+++++|++||+++++|++++|+++|++.+++.+...+..++..++..+++++++++++|...+ +++.+++.+ .+..++
T Consensus 995 ~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~-~~~pl~~~~~~~~~~~ 1073 (1622)
T PLN03130 995 SILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLW-AIMPLLVLFYGAYLYY 1073 (1622)
T ss_pred HHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988888888888888888888888874433 333222222 223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 005203 342 GLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNM-LYHSTQV 420 (709)
Q Consensus 342 ~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~i 420 (709)
.+..++..+...+..+...+++.|+++|+++||+|+.++++.+++.+.. +...+.............. +..+..+
T Consensus 1074 ~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~----~~~~~~~~~~~~~~~wl~~~l~~~~~~ 1149 (1622)
T PLN03130 1074 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSM----DNNIRFTLVNMSSNRWLAIRLETLGGL 1149 (1622)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455567788999999999999999999875554444433 3333332222211111111 1222233
Q ss_pred HHHHHHHHHHHhCC---------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc-c
Q 005203 421 IAVLIGGMFIMRGN---------ITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSK-G 490 (709)
Q Consensus 421 ~vl~~ga~lV~~G~---------lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~-~ 490 (709)
++++.|.+.+..+. .++|.+ ++|...+...+..+...+..+.....+.+|+.++++.++|.+...+ .
T Consensus 1150 ~i~~~~~~~v~~~~~~~~~~~~~~~~G~~---ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~ 1226 (1622)
T PLN03130 1150 MIWLTASFAVMQNGRAENQAAFASTMGLL---LSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENN 1226 (1622)
T ss_pred HHHHHHHHHHHcccccccchhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCC
Confidence 33444444455432 334444 4455566666677777778888899999999999988776431111 1
Q ss_pred ccc--cCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC
Q 005203 491 KKL--QRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE 568 (709)
Q Consensus 491 ~~~--~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~ 568 (709)
.++ .+..|.|+|+||+|+|+++ .++||+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++
T Consensus 1227 ~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130 1227 RPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISK 1305 (1622)
T ss_pred CCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEeccc
Confidence 111 1235789999999999754 3689999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHH
Q 005203 569 VDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRI 646 (709)
Q Consensus 569 ~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRI 646 (709)
++++++|++|++|||||+||+|||||||.+++ +.+||++++|++.|+++|+|.+||+||||.||| .+|||||||||
T Consensus 1306 i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~--~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrl 1383 (1622)
T PLN03130 1306 FGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN--EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL 1383 (1622)
T ss_pred CCHHHHHhccEEECCCCccccccHHHHhCcCC--CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999984 679999999999999999999999999999999 49999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 647 aLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||||+|+|+|||||||||+||.+||+.|+++|++..+ ++|+|+||||++||.. ||
T Consensus 1384 aLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~----~~TvI~IAHRL~tI~~-~D 1440 (1622)
T PLN03130 1384 SLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK----SCTMLIIAHRLNTIID-CD 1440 (1622)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC----CCEEEEEeCChHHHHh-CC
Confidence 999999999999999999999999999999999998765 4999999999999976 45
No 32
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.9e-78 Score=757.08 Aligned_cols=467 Identities=19% Similarity=0.259 Sum_probs=391.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 234 SGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGAL 313 (709)
Q Consensus 234 ~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~l 313 (709)
..+...++.+.......+...++|.++|+++++.|++||++.++|++++|+++|++.+++.+...+..++..++.+++++
T Consensus 1011 ~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~l 1090 (1560)
T PTZ00243 1011 GTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSI 1090 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556665556666778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHH
Q 005203 314 IYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKL 393 (709)
Q Consensus 314 i~m~~~s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~ 393 (709)
+++++.+|.+.++++..+.++..+...|.+..+...+......+...+++.|+++|+++||+||.|+.+.+++.+..+..
T Consensus 1091 i~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~ 1170 (1560)
T PTZ00243 1091 LVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVV 1170 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHH
Confidence 99998888655444333333333344555666666666666678889999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 394 ADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFI--MRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGAS 471 (709)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~vl~~ga~lV--~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~ 471 (709)
.+..........+......++..+..+++.+++...+ ..+.+++|.+.+++.|..++..++..++..+.++.....+.
T Consensus 1171 ~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~ 1250 (1560)
T PTZ00243 1171 YSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSV 1250 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8766665545555555555555554444444444433 34568999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcccc-------------------------ccc-----cccCCCCcEEEEEEEEEcCCCCCCccceee
Q 005203 472 EKVFQLMDLMPSDQFMS-------------------------KGK-----KLQRLMGRIDFVDVSFRYSSREMVPVLQHV 521 (709)
Q Consensus 472 ~Rl~~il~~~~e~~~~~-------------------------~~~-----~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~l 521 (709)
+|+.++++..|+++... ... +..+..|.|+|+||+|+|+++ .+++|+|+
T Consensus 1251 eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~v 1329 (1560)
T PTZ00243 1251 ERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGV 1329 (1560)
T ss_pred HHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecc
Confidence 99999997543321000 000 001124689999999999864 36799999
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCC
Q 005203 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCT 601 (709)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~ 601 (709)
||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++.+++|++||+|||||+||+|||||||..+ .
T Consensus 1330 sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~-~ 1408 (1560)
T PTZ00243 1330 SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPF-L 1408 (1560)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987 3
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccC-CCEEEEeCCCCCCCHHHHHHHHH
Q 005203 602 QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD-PTILILDEATSALDAESEHNIKG 678 (709)
Q Consensus 602 ~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~-p~ILILDEaTSaLD~~tE~~I~~ 678 (709)
+++||+|++|++.|+++|+|.++|+||||.||| .+|||||||||||||||+|+ |+|||||||||+||+++|+.|++
T Consensus 1409 -~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~ 1487 (1560)
T PTZ00243 1409 -EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQA 1487 (1560)
T ss_pred -CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHH
Confidence 789999999999999999999999999999999 49999999999999999996 89999999999999999999999
Q ss_pred HHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 679 VLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 679 ~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++..+ ++|+|+||||++|+.. ||
T Consensus 1488 ~L~~~~~----~~TvI~IAHRl~ti~~-~D 1512 (1560)
T PTZ00243 1488 TVMSAFS----AYTVITIAHRLHTVAQ-YD 1512 (1560)
T ss_pred HHHHHCC----CCEEEEEeccHHHHHh-CC
Confidence 9988754 4999999999999865 45
No 33
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.2e-78 Score=758.27 Aligned_cols=468 Identities=24% Similarity=0.302 Sum_probs=374.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 228 ILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVL 307 (709)
Q Consensus 228 ~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l 307 (709)
..+.++..++.+++.++....+.+...++|.+++++++++|++||+++++|++++|+++|++.+++.+...+..++..++
T Consensus 957 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~ 1036 (1495)
T PLN03232 957 ALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLW 1036 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455567788899999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHH
Q 005203 308 QGTGALIYLIVLSWPLGLCTLMICSALAGL-MLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRY 386 (709)
Q Consensus 308 ~~i~~li~m~~~s~~Lalv~l~~~~l~~~i-~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~ 386 (709)
..++++++++.+++...++ ++.+++.+.+ ..++.+..++..+......+...+++.|+++|+++||+||.++++.+++
T Consensus 1037 ~~i~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~ 1115 (1495)
T PLN03232 1037 QLLSTFALIGTVSTISLWA-IMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKIN 1115 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHH
Confidence 8888888888877644332 2222222222 2334344444555555666788999999999999999999988655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh-CCc----C-HHHHHHHHHHHHHHHHHHHHHHH
Q 005203 387 KHWLGKLADINLRQSAAYGFWNL-CFNMLYHSTQVIAVLIGGMFIMR-GNI----T-AEQLTKFILYSEWLIYSTWWVGD 459 (709)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~i~vl~~ga~lV~~-G~l----t-~G~l~af~~y~~~~~~~~~~l~~ 459 (709)
.+..+.. .+.......... ....+..+..+++++.|+..+.. |.+ + .+.+..++.|...+..++.++..
T Consensus 1116 ~~~~~~~----~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~ 1191 (1495)
T PLN03232 1116 GKSMDNN----IRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLR 1191 (1495)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444433 332222111111 11111122223333444444543 432 1 23344467788888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccccc-ccc--cCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcC
Q 005203 460 NLSSLMQSVGASEKVFQLMDLMPSDQFMSKG-KKL--QRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGL 536 (709)
Q Consensus 460 ~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~~-~~~--~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~ 536 (709)
.+.++.....+.+|+.++++.++|.+....+ .++ .+..|.|+|+||+|+|+++ .+++|+|+||+|+|||++|||||
T Consensus 1192 ~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~ 1270 (1495)
T PLN03232 1192 QASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGR 1270 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECC
Confidence 9999999999999999999987764321111 111 1335789999999999654 36899999999999999999999
Q ss_pred CCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHH
Q 005203 537 SGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQA 616 (709)
Q Consensus 537 SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a 616 (709)
||||||||+++|+|+|+|++|+|+|||+|+++++++++|++|++|||||+||+|||||||.+++ +++||++++|++.|
T Consensus 1271 SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~--~~sdeei~~al~~a 1348 (1495)
T PLN03232 1271 TGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS--EHNDADLWEALERA 1348 (1495)
T ss_pred CCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--CCCHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999999983 68999999999999
Q ss_pred hhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEE
Q 005203 617 YAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVL 694 (709)
Q Consensus 617 ~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvI 694 (709)
+++|+|+++|+||||.||| .+|||||||||||||||+|+|+|||||||||+||.+||+.|+++|++..+ ++|+|
T Consensus 1349 ~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~----~~TvI 1424 (1495)
T PLN03232 1349 HIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFK----SCTML 1424 (1495)
T ss_pred CCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC----CCEEE
Confidence 9999999999999999999 49999999999999999999999999999999999999999999998754 49999
Q ss_pred EEecChhhhhhhcC
Q 005203 695 VIAHRLISTALSFD 708 (709)
Q Consensus 695 iIAHRlsti~~~~~ 708 (709)
+||||++|+.. ||
T Consensus 1425 ~IAHRl~ti~~-~D 1437 (1495)
T PLN03232 1425 VIAHRLNTIID-CD 1437 (1495)
T ss_pred EEeCCHHHHHh-CC
Confidence 99999999976 55
No 34
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.8e-79 Score=656.85 Aligned_cols=511 Identities=24% Similarity=0.316 Sum_probs=449.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 005203 177 VSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLI-------LLCVTSGICSGLRGCCFGIAN 249 (709)
Q Consensus 177 ~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~-------~l~~~~~~~~~lr~~~~~~~~ 249 (709)
+...+..++.+.+++.+.-++.+..|.|+.++ .|.++.+.+...|+ ++.+.++++.++|+.+..+++
T Consensus 18 l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQV------yDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig 91 (580)
T COG4618 18 LAANRRAFIGVGLFSAVINLLALTGPLYMLQV------YDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIG 91 (580)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH------HhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777788888888889999998666 45555544433332 233446778999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005203 250 MILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLM 329 (709)
Q Consensus 250 ~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~ 329 (709)
.++..+++..+|...++.|.. .+..|+=.+-+ .|.+++++|++..-...+.|.=-+-+++.+.|.++|++++++++
T Consensus 92 ~~lD~~L~~~v~~a~~~~~l~---~~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ 167 (580)
T COG4618 92 ERLDRQLNGPVFAASFSAPLL---RRGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALA 167 (580)
T ss_pred HHHHHHhccHHHHHHHhhHHh---hcCCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999877754 35566555556 48899999999977777778766778888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 330 ICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNL 409 (709)
Q Consensus 330 ~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 409 (709)
.+.+++.+.++.....++..++..+...+.+....-+.++.++|++.|..+...+||.+....+.+.+.+.+-..+.+..
T Consensus 168 ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~ 247 (580)
T COG4618 168 GAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGA 247 (580)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 98888877666666655555565666778888899999999999999999999999999998888888888778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 005203 410 CFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSK 489 (709)
Q Consensus 410 ~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~ 489 (709)
+...+-.+.+..++.+|+|+|++|++|.|+++|-....+....|+...+..|.++..+..+..|+.+.+...|+.. .
T Consensus 248 ~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~---~ 324 (580)
T COG4618 248 LSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA---E 324 (580)
T ss_pred HHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc---C
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887643 3
Q ss_pred cccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC
Q 005203 490 GKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV 569 (709)
Q Consensus 490 ~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~ 569 (709)
..+.|...+.+.+++|+|.-|+. ++++++|+||+++|||.+|||||||||||||.++|.|.++|.+|.|++||-|++++
T Consensus 325 ~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qW 403 (580)
T COG4618 325 RMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQW 403 (580)
T ss_pred CCCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcC
Confidence 34556677899999999987765 58999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHH
Q 005203 570 DIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIA 647 (709)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIa 647 (709)
|.+++-++|||.|||..||+|||+|||+=|++ ++|+|+|.+||+.|+.||.|.++|+||||.||| ..|||||||||+
T Consensus 404 d~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~-~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIa 482 (580)
T COG4618 404 DREQLGRHIGYLPQDVELFDGTIAENIARFGE-EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIA 482 (580)
T ss_pred CHHHhccccCcCcccceecCCcHHHHHHhccc-cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHH
Confidence 99999999999999999999999999998866 899999999999999999999999999999999 499999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
||||||.+|.+++||||.|+||.+-|+.+.++|.+.++. |+|+|+|||||+.+.+
T Consensus 483 LARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~r---G~~vvviaHRPs~L~~ 537 (580)
T COG4618 483 LARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR---GGTVVVIAHRPSALAS 537 (580)
T ss_pred HHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHc---CCEEEEEecCHHHHhh
Confidence 999999999999999999999999999999999998864 8999999999996543
No 35
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-77 Score=650.69 Aligned_cols=518 Identities=20% Similarity=0.240 Sum_probs=424.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 180 DRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEI-AVFHRNVR--LLILLCVTSGICSGLRGCCFGIANMILVKRM 256 (709)
Q Consensus 180 ~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~-~~~~~~~~--ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~l 256 (709)
+++.+.++++++++..+..+.+-...+|.|........ .++..-.. .+=.++++..+..+....+......++...+
T Consensus 14 ~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~l 93 (573)
T COG4987 14 HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLSAL 93 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 67777777777777776666554445555432211111 11110000 1112344455566666667777778899999
Q ss_pred HHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005203 257 RETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAG 336 (709)
Q Consensus 257 r~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~ 336 (709)
|.++|+++...++.-..+.+.||+++|+.+|++.+++.|-..+.+.+..++...++.+.+-++||++++.....+.+..+
T Consensus 94 Rv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~ll 173 (573)
T COG4987 94 RVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLL 173 (573)
T ss_pred HHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888888889999999877666555544
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 337 L-MLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLY 415 (709)
Q Consensus 337 i-~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 415 (709)
+ ...+.++-++..+...+.++.+.+++.|.+.|..+.+.||+++.+.+.+....+.+.+.+.+..+...+.+.+..++.
T Consensus 174 i~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~ 253 (573)
T COG4987 174 IIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIA 253 (573)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 566667777777777777899999999999999999999999999999998888888888888888888888777777
Q ss_pred HHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccccc
Q 005203 416 HSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVG-DNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQ 494 (709)
Q Consensus 416 ~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~-~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~~~~~~ 494 (709)
+...+.++++.+..+-.|..+..+..+++........++..+. ..+.+..+...+..|+.++.+++||..++ +...+
T Consensus 254 g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~--~~~~~ 331 (573)
T COG4987 254 GLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP--DEQTA 331 (573)
T ss_pred HHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC--ccccC
Confidence 7766645555556677788775444443333233444555555 66678888899999999999998886643 12122
Q ss_pred CCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHH
Q 005203 495 RLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL 574 (709)
Q Consensus 495 ~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~l 574 (709)
.....++++||||+||++ ++++|+|+||++++||+|||+|+||||||||+++|.|.|+|++|+|.++|.|++.++.+.+
T Consensus 332 ~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 332 TTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQAL 410 (573)
T ss_pred CccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhH
Confidence 222279999999999986 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHh
Q 005203 575 RGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAI 652 (709)
Q Consensus 575 R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL 652 (709)
|+.|++++|.++||+||+|||+.+++| +++||+++++++++|++++++++|+||||.+|| .+||||||||++|||+|
T Consensus 411 ~e~i~vl~Qr~hlF~~Tlr~NL~lA~~-~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~L 489 (573)
T COG4987 411 RETISVLTQRVHLFSGTLRDNLRLANP-DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARAL 489 (573)
T ss_pred HHHHhhhccchHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHH
Confidence 999999999999999999999999987 899999999999999999999999999999999 49999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
++|+|+++|||||.+||++||++|.+.|.+..+ |+|+|+||||+.-+..
T Consensus 490 L~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~----~kTll~vTHrL~~le~ 538 (573)
T COG4987 490 LHDAPLWLLDEPTEGLDPITERQVLALLFEHAE----GKTLLMVTHRLRGLER 538 (573)
T ss_pred HcCCCeEEecCCcccCChhhHHHHHHHHHHHhc----CCeEEEEecccccHhh
Confidence 999999999999999999999999999977654 5999999999976543
No 36
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-79 Score=645.28 Aligned_cols=459 Identities=31% Similarity=0.461 Sum_probs=408.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 005203 241 RGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTG-ALIYLIVL 319 (709)
Q Consensus 241 r~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~-~li~m~~~ 319 (709)
|..++...++....++--+.|.|+.+|++.|.-++.+|.+...+......|+..+...+..++..++-... +.++...|
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 34556677788888999999999999999999999999987777666556666665555555555554444 34445579
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 005203 320 SWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLR 399 (709)
Q Consensus 320 s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~ 399 (709)
+|+.++++++.+.+|+++.....-.+....++..++.+..++...+++-+.+++|.||.|+.+..||.+.++.+.+..++
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 99999999999999998866555566666777778788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005203 400 QSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMD 479 (709)
Q Consensus 400 ~~~~~~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~ 479 (709)
......+.+.....++.....++.+.++..+.+|++|+|+++....|..|+..|..-++..+.++.++...+|+++|+++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 88777777887888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccccc-CCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcce
Q 005203 480 LMPSDQFMSKGKKLQ-RLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQ 558 (709)
Q Consensus 480 ~~~e~~~~~~~~~~~-~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~ 558 (709)
.+.|..+.++..++. -..|.+.|+||+|.|.++ +++|+|+||++++|+++|||||||+||||++++|.|||++++|.
T Consensus 242 ~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 242 VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred cchhhccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 888765333222333 235779999999999864 79999999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCC--
Q 005203 559 ILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD-- 636 (709)
Q Consensus 559 I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~-- 636 (709)
|.+||+|+++...+++|+.||+||||..||++||..||.||.| ++++||+++|++.|++|+||+.+|+||||.|||.
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~-~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP-DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-cccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 9999999999999999999999999999999999999999987 9999999999999999999999999999999995
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhh
Q 005203 637 LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALS 706 (709)
Q Consensus 637 ~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~ 706 (709)
.||||||||+||||+++|+|+||+|||||||||..||++|+.+|+...+ |+|.++||||||||..+
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~----~rttlviahrlsti~~a 464 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA----GRTTLVIAHRLSTIIDA 464 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC----CCeEEEEeehhhhccCC
Confidence 8999999999999999999999999999999999999999999999875 59999999999999754
No 37
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4e-74 Score=720.32 Aligned_cols=463 Identities=20% Similarity=0.254 Sum_probs=383.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 234 SGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGAL 313 (709)
Q Consensus 234 ~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~l 313 (709)
..++.+++.++....+.+...+++.++++++++.|++||++.++|++++|+++|++.+++.+...+..++..++++++.+
T Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l 1017 (1490)
T TIGR01271 938 VLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAI 1017 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHH
Q 005203 314 IYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKL 393 (709)
Q Consensus 314 i~m~~~s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~ 393 (709)
+++++++|+++++++..+++++++..+|.+..++..+......+...+++.|+++|+.+||+||.++.+.+++.+..+..
T Consensus 1018 ~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~ 1097 (1490)
T TIGR01271 1018 FVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLH 1097 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999887655554444444445555555556665666678889999999999999999999999999998888765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 394 ADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEK 473 (709)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~R 473 (709)
............++.....++..+..+++ +...+..+.++.|.+..+++|...+..++..+...+.++.....+.+|
T Consensus 1098 ~~~~~~~~~~~~wl~~~~~~i~~~~~~~~---~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eR 1174 (1490)
T TIGR01271 1098 TANWFLYLSTLRWFQMRIDIIFVFFFIAV---TFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSR 1174 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54333332223333333333222211111 111122233456666666777778888888888899999999999999
Q ss_pred HHHHHhcCCCCcccccc---------------ccc--cCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcC
Q 005203 474 VFQLMDLMPSDQFMSKG---------------KKL--QRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGL 536 (709)
Q Consensus 474 l~~il~~~~e~~~~~~~---------------~~~--~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~ 536 (709)
+.++.+.++|....... ..+ .+..|.|+|+||+|+|++. .+++|+|+||+|+|||+|||||+
T Consensus 1175 i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGr 1253 (1490)
T TIGR01271 1175 VFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGR 1253 (1490)
T ss_pred HHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECC
Confidence 99999877664311110 000 1234789999999999864 47899999999999999999999
Q ss_pred CCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHH
Q 005203 537 SGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQA 616 (709)
Q Consensus 537 SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a 616 (709)
||||||||+++|+|+|+ ++|+|+|||+|+++++++++|++|+||||||+||+|||||||..++ +.+||++++|++.+
T Consensus 1254 SGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~--~~tdeei~~aL~~~ 1330 (1490)
T TIGR01271 1254 TGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE--QWSDEEIWKVAEEV 1330 (1490)
T ss_pred CCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc--CCCHHHHHHHHHHC
Confidence 99999999999999997 7999999999999999999999999999999999999999998773 67999999999999
Q ss_pred hhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEE
Q 005203 617 YAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVL 694 (709)
Q Consensus 617 ~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvI 694 (709)
+++++|.++|+||||.||| .+|||||||||||||||+|+|+|||||||||+||.+||+.|++.|++..+ ++|+|
T Consensus 1331 ~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~----~~TvI 1406 (1490)
T TIGR01271 1331 GLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS----NCTVI 1406 (1490)
T ss_pred CCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC----CCEEE
Confidence 9999999999999999999 49999999999999999999999999999999999999999999998765 49999
Q ss_pred EEecChhhhhhhcC
Q 005203 695 VIAHRLISTALSFD 708 (709)
Q Consensus 695 iIAHRlsti~~~~~ 708 (709)
+||||++|+.. ||
T Consensus 1407 ~IaHRl~ti~~-~D 1419 (1490)
T TIGR01271 1407 LSEHRVEALLE-CQ 1419 (1490)
T ss_pred EEecCHHHHHh-CC
Confidence 99999999876 55
No 38
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.2e-73 Score=683.35 Aligned_cols=509 Identities=24% Similarity=0.359 Sum_probs=422.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 188 FSALIIAALSEIFIPHFLTASIFTAQSSEI--AVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALL 265 (709)
Q Consensus 188 ~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~--~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll 265 (709)
+++.++..++.++.-+++..+......... ...........+++++..++..+|+..+...+.+....+..++++.++
T Consensus 823 ~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Il 902 (1381)
T KOG0054|consen 823 LLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSIL 902 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666555432211100 011122334445566677788899999999999999999999999999
Q ss_pred cCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 266 LQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQ 345 (709)
Q Consensus 266 ~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~~~~~ 345 (709)
|-|++|||..++|.|++||++|++.+++.+...+...+...+..+++++++.+..|+..++++....++..+..+|.+-.
T Consensus 903 rapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~ts 982 (1381)
T KOG0054|consen 903 RAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATS 982 (1381)
T ss_pred hCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998888777777777766776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 346 KKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLI 425 (709)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~vl~~ 425 (709)
+...+-....++...+|+.|++.|+.|||+|+.|+++.+++....+.......-......++..-..++ ..++++..
T Consensus 983 ReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~i---g~~~v~~~ 1059 (1381)
T KOG0054|consen 983 RELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELL---GNLVVLIA 1059 (1381)
T ss_pred HHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 666666666678889999999999999999999999888888888777665443332333333322333 23333333
Q ss_pred HHHHHHh--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc-cc--ccccCCCCcE
Q 005203 426 GGMFIMR--GNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMS-KG--KKLQRLMGRI 500 (709)
Q Consensus 426 ga~lV~~--G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~-~~--~~~~~~~~~I 500 (709)
+...++. +.++.|...-.++|..++...+++++....++.....+.||+.++.+.|+|.+... .+ .+..+..|+|
T Consensus 1060 al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I 1139 (1381)
T KOG0054|consen 1060 ALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEI 1139 (1381)
T ss_pred HHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeE
Confidence 3333332 22778998888999999999999999999999999999999999999887732211 12 1223467999
Q ss_pred EEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEE
Q 005203 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (709)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~ 580 (709)
+|+|++.+|.++ .++||+||||+|+|||+|+|||++|||||||++.|.|+.+|.+|+|.|||+|++++++.++|+++++
T Consensus 1140 ~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsI 1218 (1381)
T KOG0054|consen 1140 EFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSI 1218 (1381)
T ss_pred EEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCee
Confidence 999999999875 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCCE
Q 005203 581 VGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTI 658 (709)
Q Consensus 581 V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~I 658 (709)
+||||.||+||+|.|+--++ +.+|++||+|++.|++.++|.++|.|+|+.|.| .|+|-||||-+||||||+|+++|
T Consensus 1219 IPQdPvLFsGTvR~NLDPf~--e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skI 1296 (1381)
T KOG0054|consen 1219 IPQDPVLFSGTVRFNLDPFD--EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKI 1296 (1381)
T ss_pred eCCCCceecCccccccCccc--ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCE
Confidence 99999999999999998773 789999999999999999999999999999998 59999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhh
Q 005203 659 LILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALS 706 (709)
Q Consensus 659 LILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~ 706 (709)
|+|||||+++|++|+..|+++|++..++ ||||.||||++||..+
T Consensus 1297 LvLDEATAsVD~~TD~lIQ~tIR~~F~d----cTVltIAHRl~TVmd~ 1340 (1381)
T KOG0054|consen 1297 LVLDEATASVDPETDALIQKTIREEFKD----CTVLTIAHRLNTVMDS 1340 (1381)
T ss_pred EEEecccccCChHHHHHHHHHHHHHhcC----CeEEEEeeccchhhhc
Confidence 9999999999999999999999987765 9999999999998653
No 39
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=3.1e-72 Score=645.46 Aligned_cols=510 Identities=18% Similarity=0.169 Sum_probs=391.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 173 MWDLVSKDRWIIFAAFSALIIAALSEIFI-PHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMI 251 (709)
Q Consensus 173 l~~~~~~~~~~l~~~~~~~l~~~~~~l~~-P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~ 251 (709)
++++.+++++.++..++++++.+++.+.. |++.+..++.... +. .....+.+++++..++.+++.+....++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (547)
T PRK10522 4 LRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-SL----LVLPEFLGLLLLLMAVTLGSQLALTTLGHH 78 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888775 5555555532211 10 011112222333345677888999999999
Q ss_pred HHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 005203 252 LVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMIC 331 (709)
Q Consensus 252 l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~ 331 (709)
+..++|.++|+|++++|+++|+++++||+++|+++|++.++..+. .+..++.++++.++++++|++++|.+++++++.+
T Consensus 79 ~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~ 157 (547)
T PRK10522 79 FVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWM 157 (547)
T ss_pred HHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998765 4677888899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 332 SALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTE---KQEVKRYKHWLGKLADINLRQSAAYGFWN 408 (709)
Q Consensus 332 ~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e---~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 408 (709)
|+.+++..++.+..++..++.++..++.++.+.|.++|+++++ ++.+ +.+.+++.+..++..+...+..+......
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (547)
T PRK10522 158 AVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAV 236 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 8887776666666666667777778899999999999999996 4443 34566777777666665555443333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Q 005203 409 LCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMS 488 (709)
Q Consensus 409 ~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~ 488 (709)
.....+..+...+.+++++.. +..+.+.+.++..+...+..|+..+...+..+..+..+.+|+.++.+.+++.+. .
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~-~ 312 (547)
T PRK10522 237 NWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF-P 312 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-c
Confidence 222111111111122222221 122444444455555556788899999999999999999999999765443221 1
Q ss_pred ccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC
Q 005203 489 KGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE 568 (709)
Q Consensus 489 ~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~ 568 (709)
..... +..+.|+++||+|+|+++ +++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|+++
T Consensus 313 ~~~~~-~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 389 (547)
T PRK10522 313 RPQAF-PDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA 389 (547)
T ss_pred ccccc-CcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCC
Confidence 11111 113579999999999843 579999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 569 VDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 569 ~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
++.+++|++|+||+||+++|+|||+|| + + +.++++++++++.+++++++.. |+|. +++.+|||||||||+|
T Consensus 390 ~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~-~~~~~~~~~~~~~~~l~~~~~~-~~~~---~~G~~LSgGq~qRl~l 460 (547)
T PRK10522 390 EQPEDYRKLFSAVFTDFHLFDQLLGPE---G-K-PANPALVEKWLERLKMAHKLEL-EDGR---ISNLKLSKGQKKRLAL 460 (547)
T ss_pred CCHHHHhhheEEEecChhHHHHhhccc---c-C-chHHHHHHHHHHHcCCchhhhc-cccC---CCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999 3 3 6788889888888888777653 5553 2346899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||++++|++||||||||+||+++|+.+.+.+.+..+. .++|+|+||||++++. .+|
T Consensus 461 ARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~--~~~tvi~itH~~~~~~-~~d 517 (547)
T PRK10522 461 LLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQE--MGKTIFAISHDDHYFI-HAD 517 (547)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHh--CCCEEEEEEechHHHH-hCC
Confidence 99999999999999999999999999999999754321 1589999999999865 455
No 40
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.7e-70 Score=682.65 Aligned_cols=503 Identities=19% Similarity=0.205 Sum_probs=385.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 005203 177 VSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLR---GCCFGIANMILV 253 (709)
Q Consensus 177 ~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr---~~~~~~~~~~l~ 253 (709)
++.+++.++.+.++.++..++.+..|++++..+......+.. . ....+..+++++..+..... .+....++.++.
T Consensus 296 ~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir 373 (1495)
T PLN03232 296 NNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPA-W-VGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLR 373 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777778888888889999988776433222211 0 01111111111111111111 112246677778
Q ss_pred HHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005203 254 KRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSA 333 (709)
Q Consensus 254 ~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~l 333 (709)
..++..+|+|++++|..++++.++|++++++++|++.+++.+ ..+..++...+..++++++++ +.+++.+++++++
T Consensus 374 ~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~---~~lg~~~l~~~~v 449 (1495)
T PLN03232 374 STLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLY---QQLGVASLFGSLI 449 (1495)
T ss_pred HHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHH
Confidence 888889999999999999999999999999999999999986 445555544444444443332 3455544443333
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 334 LAG---LMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLC 410 (709)
Q Consensus 334 ~~~---i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (709)
+++ +..++.+..++.+++.++..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+..........+
T Consensus 450 ~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~ 529 (1495)
T PLN03232 450 LFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFI 529 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 23445566777777778878889999999999999999999999998888887776665555444333322221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 005203 411 FNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKG 490 (709)
Q Consensus 411 ~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~~ 490 (709)
.... ...+.++++|++++.+|.+|+|.+++++++...+..|+..+...+..+.++..+.+|+.++++.+++... . .
T Consensus 530 ~~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~-~-~ 605 (1495)
T PLN03232 530 LNSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA-Q-N 605 (1495)
T ss_pred HHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-c-c
Confidence 1111 1123457889999999999999999999999999999999999999999999999999999987654221 1 1
Q ss_pred ccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC
Q 005203 491 KKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD 570 (709)
Q Consensus 491 ~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~ 570 (709)
.......+.|+++||+|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|.+.
T Consensus 606 ~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~---------- 675 (1495)
T PLN03232 606 PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV---------- 675 (1495)
T ss_pred CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE----------
Confidence 1111123469999999999864346899999999999999999999999999999999999999999773
Q ss_pred HHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHH
Q 005203 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAI 648 (709)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaL 648 (709)
.+|++||||+|+|+||+|||||||+||+ +.++|+++++++.|+++++++.||+||||.||| .+|||||||||+|
T Consensus 676 --~~~~~Iayv~Q~p~Lf~gTIreNI~fg~--~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 751 (1495)
T PLN03232 676 --VIRGSVAYVPQVSWIFNATVRENILFGS--DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSM 751 (1495)
T ss_pred --EecCcEEEEcCccccccccHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHH
Confidence 4688999999999999999999999995 478999999999999999999999999999999 3999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGV-LRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~-L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||+|++|+||+|||||||||+++|+.|.+. ++...+ ++|+|+||||++++.. +|
T Consensus 752 ARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~----~kT~IlvTH~~~~l~~-aD 807 (1495)
T PLN03232 752 ARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELK----GKTRVLVTNQLHFLPL-MD 807 (1495)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhc----CCEEEEEECChhhHHh-CC
Confidence 9999999999999999999999999999765 554433 5999999999998654 55
No 41
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.3e-69 Score=632.00 Aligned_cols=521 Identities=15% Similarity=0.131 Sum_probs=423.3
Q ss_pred HHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH----HHHHHHHH
Q 005203 166 LWRALGKMWDLVSKDRW-----IIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLI----LLCVTSGI 236 (709)
Q Consensus 166 ~~~~~~~l~~~~~~~~~-----~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~----~l~~~~~~ 236 (709)
..+-+.+++++++++++ .++..+++.++..++.+..|++.+..++.....+...+......+. +..++..+
T Consensus 75 ~~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~ 154 (659)
T TIGR00954 75 FLGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSA 154 (659)
T ss_pred HHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446677888888876 5777778888888899999999888775443222211211111111 22223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 237 CSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYL 316 (709)
Q Consensus 237 ~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m 316 (709)
..+++.++......++..+++...|+++...+..+|++ ++|++.+|+++|++.+++.+...+..++..++.+++++++|
T Consensus 155 ~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L 233 (659)
T TIGR00954 155 IKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKL 233 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666677777788888888888877888889987 78999999999999999999999999999999999888888
Q ss_pred HH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHH
Q 005203 317 IV-LSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLAD 395 (709)
Q Consensus 317 ~~-~s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~ 395 (709)
+. ++|.+++++++.+|+..++..++.+...+..++.++..++..+...|.++|+++||+|+.|+.+.+++.+..+++.+
T Consensus 234 ~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~ 313 (659)
T TIGR00954 234 LTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVE 313 (659)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 86 99999999999999998888888888888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-h----CCcCHHHHHH-HHHH---HHHHHHHHHHHHHHHHHH
Q 005203 396 INLRQSAAYGFWNLCFNMLYHS--TQVIAVLIGGMFIM-R----GNITAEQLTK-FILY---SEWLIYSTWWVGDNLSSL 464 (709)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~i~~~--~~i~vl~~ga~lV~-~----G~lt~G~l~a-f~~y---~~~~~~~~~~l~~~~~~~ 464 (709)
...+..+....+..+..++... ..++.++.|+..+. + |.+|+|.+++ |+.| ..++..++..+++.+.++
T Consensus 314 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i 393 (659)
T TIGR00954 314 HLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDM 393 (659)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777777777776542 23333334443332 2 7899999887 7766 455688889999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcc-------ccc--c--------------ccccCCCCcEEEEEEEEEcCCCCCCccceee
Q 005203 465 MQSVGASEKVFQLMDLMPSDQF-------MSK--G--------------KKLQRLMGRIDFVDVSFRYSSREMVPVLQHV 521 (709)
Q Consensus 465 ~~~~~~~~Rl~~il~~~~e~~~-------~~~--~--------------~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~l 521 (709)
.+..++.+|+.++++.+++... ... + .......+.|+++||+|+|+++ +++|+|+
T Consensus 394 ~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~i 471 (659)
T TIGR00954 394 TRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESL 471 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeecc
Confidence 9999999999999986433110 000 0 0011123569999999999743 4799999
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCC
Q 005203 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCT 601 (709)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~ 601 (709)
||+|++||++||+||||||||||+++|+|+|+|++|+|.+|+ |++|+||+|+|++|++|++|||.++..
T Consensus 472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~ 540 (659)
T TIGR00954 472 SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDS 540 (659)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCC
Confidence 999999999999999999999999999999999999999864 678999999999999999999998741
Q ss_pred ------CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 005203 602 ------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEH 674 (709)
Q Consensus 602 ------~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe-~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~ 674 (709)
++.++++++++++.+++++++.+ |.||||..+. .+||||||||++|||||+++|++||||||||+||+++|+
T Consensus 541 ~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~ 619 (659)
T TIGR00954 541 SEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG 619 (659)
T ss_pred hhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 24678999999999999999988 9999999877 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 675 NIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 675 ~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.+.+.+++. ++|+|+||||++++.. +|
T Consensus 620 ~l~~~l~~~------~~tvI~isH~~~~~~~-~d 646 (659)
T TIGR00954 620 YMYRLCREF------GITLFSVSHRKSLWKY-HE 646 (659)
T ss_pred HHHHHHHHc------CCEEEEEeCchHHHHh-CC
Confidence 999999763 4899999999998743 55
No 42
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.6e-69 Score=675.51 Aligned_cols=501 Identities=18% Similarity=0.215 Sum_probs=381.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHH
Q 005203 176 LVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICS-GLRGCC--FGIANMIL 252 (709)
Q Consensus 176 ~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~-~lr~~~--~~~~~~~l 252 (709)
+++.+++.++..+++.++..++.++.|++++..+......+.. . ....+..+++++..+.. ....+. ...++.++
T Consensus 295 l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 372 (1622)
T PLN03130 295 LNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA-W-IGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRL 372 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777788888888999999988776433222211 1 01111111111111111 111121 33667778
Q ss_pred HHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005203 253 VKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICS 332 (709)
Q Consensus 253 ~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~ 332 (709)
...++..+|+|+++++..++++.++|++++++++|++.+++.+ ..+..++...+.+++++++++. .+++.++++++
T Consensus 373 r~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~---~lg~~~l~g~~ 448 (1622)
T PLN03130 373 RSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQ---QLGVASLIGSL 448 (1622)
T ss_pred HHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999987 4455555555555555554443 33333333222
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 333 ---ALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNL 409 (709)
Q Consensus 333 ---l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 409 (709)
+.+.+..++.+..++.+++..+..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+......
T Consensus 449 v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~---- 524 (1622)
T PLN03130 449 MLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA---- 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 2222334455666667777777778889999999999999999999998888887766664443333332222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 005203 410 CFNMLYHS--TQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFM 487 (709)
Q Consensus 410 ~~~~i~~~--~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~ 487 (709)
+..++... ..+.++++|++.+.+|.+|+|.+++++++...+..|+..+...+..+.++..+.+|+.++++.+++...
T Consensus 525 ~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~- 603 (1622)
T PLN03130 525 FNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL- 603 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-
Confidence 22222221 134567889999999999999999999999999999999999999999999999999999986543211
Q ss_pred cccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-ceEEECCEeC
Q 005203 488 SKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN-GQILIDGFPI 566 (709)
Q Consensus 488 ~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~-G~I~idG~di 566 (709)
... ......+.|+++||+|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++ |+|.
T Consensus 604 ~~~-~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~------ 676 (1622)
T PLN03130 604 PNP-PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV------ 676 (1622)
T ss_pred cCC-cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE------
Confidence 111 11112346999999999986434689999999999999999999999999999999999999999 9997
Q ss_pred CCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHH
Q 005203 567 KEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (709)
Q Consensus 567 ~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (709)
+|++||||+|+|+||+|||||||+||.+ .|+|+++++++.|+++++|+.||+|+||.||| .+|||||||
T Consensus 677 -------l~~~Iayv~Q~p~LfngTIreNI~fg~~--~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQ 747 (1622)
T PLN03130 677 -------IRGTVAYVPQVSWIFNATVRDNILFGSP--FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQ 747 (1622)
T ss_pred -------EcCeEEEEcCccccCCCCHHHHHhCCCc--ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHH
Confidence 4678999999999999999999999954 68999999999999999999999999999999 399999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKG-VLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~-~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+||||+|++|+|+||||||||||+++|+.|.+ .++...+ ++|+|+||||++++.. +|
T Consensus 748 RIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~----~kTvIlVTH~l~~l~~-aD 807 (1622)
T PLN03130 748 RVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELR----GKTRVLVTNQLHFLSQ-VD 807 (1622)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhc----CCEEEEEECCHhHHHh-CC
Confidence 9999999999999999999999999999998864 5555433 5999999999998654 45
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.2e-62 Score=618.53 Aligned_cols=508 Identities=17% Similarity=0.206 Sum_probs=385.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 176 LVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLL---ILLCVTSGICSGLRGCCFGIANMIL 252 (709)
Q Consensus 176 ~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll---~~l~~~~~~~~~lr~~~~~~~~~~l 252 (709)
+++.+++.++.++++.++..++.++.|++++..+......+.... ....+. .++.++.+++.....+....++.++
T Consensus 311 l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 389 (1522)
T TIGR00957 311 LYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDW-QGYFYTGLLFVCACLQTLILHQYFHICFVSGMRI 389 (1522)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777888888889999999998877643211111110 011111 1111222333333334456778899
Q ss_pred HHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHH
Q 005203 253 VKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWP-LGLCTLMIC 331 (709)
Q Consensus 253 ~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~-Lalv~l~~~ 331 (709)
...++..+|+|+++++..++++.++|++++++++|++.+.+.. ..+..++...+..+++++ ++++.+. .+++.++.+
T Consensus 390 r~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~-ll~~~~g~~~l~~l~~~ 467 (1522)
T TIGR00957 390 KTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALY-FLWLNLGPSVLAGVAVM 467 (1522)
T ss_pred HHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998855 344445544444444444 4444433 333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 332 SALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCF 411 (709)
Q Consensus 332 ~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (709)
++++.+...+.+..++.+++..+..++..+...|.++|+++||.++.|+.+.+++.+..++..+...+.. ....+.
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~----~~~~~~ 543 (1522)
T TIGR00957 468 VLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSA----YLHAVG 543 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 4444445556667777777777878889999999999999999999999888888777666544433332 222222
Q ss_pred HHHHHHHH--HHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 005203 412 NMLYHSTQ--VIAVLIGGMFIMR--GNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFM 487 (709)
Q Consensus 412 ~~i~~~~~--i~vl~~ga~lV~~--G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~ 487 (709)
.++..... +.++.++++.+.. +.++.+..++.+++...+..|+..+...+..+.++..+.+|+.++++.++++...
T Consensus 544 ~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~ 623 (1522)
T TIGR00957 544 TFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDS 623 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc
Confidence 22222222 2233456677664 5689999999888999999999999999999999999999999999876543211
Q ss_pred ccccccc-CCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC
Q 005203 488 SKGKKLQ-RLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI 566 (709)
Q Consensus 488 ~~~~~~~-~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di 566 (709)
....... ...+.|+++|++|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 624 ~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--- 699 (1522)
T TIGR00957 624 IERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--- 699 (1522)
T ss_pred ccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---
Confidence 0111111 112369999999999854 36799999999999999999999999999999999999999999999997
Q ss_pred CCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHH
Q 005203 567 KEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (709)
Q Consensus 567 ~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (709)
+||||+|+|++|++||+|||.+|. ..++++..++++.+++.+++..+|+|++|.+|+ .+|||||||
T Consensus 700 ----------~i~yv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkq 767 (1522)
T TIGR00957 700 ----------SVAYVPQQAWIQNDSLRENILFGK--ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ 767 (1522)
T ss_pred ----------EEEEEcCCccccCCcHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHH
Confidence 599999999999999999999994 457889999999999999999999999999999 499999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+||||+|++|+|++||||||+||+++++.|.+.+.+.. +...++|+|+|||+++.+.. +|
T Consensus 768 RiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~-~~~~~~tvIlvTH~~~~l~~-~D 829 (1522)
T TIGR00957 768 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPE-GVLKNKTRILVTHGISYLPQ-VD 829 (1522)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hhhcCCEEEEEeCChhhhhh-CC
Confidence 9999999999999999999999999999999999986421 11125899999999998765 56
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.3e-59 Score=587.29 Aligned_cols=503 Identities=19% Similarity=0.218 Sum_probs=387.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 177 VSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLI---LLCVTSGICSGLRGCCFGIANMILV 253 (709)
Q Consensus 177 ~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~---~l~~~~~~~~~lr~~~~~~~~~~l~ 253 (709)
.+.+++.++...++.++..++.++.|+++...+......+.........+.. ++.++..++.....|....++.++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r 154 (1490)
T TIGR01271 75 RRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMR 154 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666677778888899999887764321111100001111111 1122233344445556666777777
Q ss_pred HHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005203 254 KRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSA 333 (709)
Q Consensus 254 ~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~l 333 (709)
..+...+|+|+++++...+++.++|++++++++|++.+.+.+... ..++...+.+++++++++...++.+++.++.+++
T Consensus 155 ~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~ 233 (1490)
T TIGR01271 155 IALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLIL 233 (1490)
T ss_pred HHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888899999999999999999999999999999999976543 4445555666777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 334 LAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNM 413 (709)
Q Consensus 334 ~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (709)
++.+..+..+...+.+++..+...+..+...|.++||++||.|+.|+.+.+++.+..+...+...+..........+ ..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~-~~ 312 (1490)
T TIGR01271 234 LALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSA-FF 312 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 77777777788888888888888888999999999999999999999888777776665544444333222221211 11
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccc
Q 005203 414 LYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYST-WWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKK 492 (709)
Q Consensus 414 i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~-~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~~~~ 492 (709)
. ....+.++.++++.+..| ++++.++++++|...+..++ ..+...+..+.++.++.+|+.++++.++.+.. ...
T Consensus 313 ~-~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~---~~~ 387 (1490)
T TIGR01271 313 F-SGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL---EYN 387 (1490)
T ss_pred H-HHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc---ccc
Confidence 1 222345566677777655 78999999999988887776 46888888899999999999999986543211 100
Q ss_pred ccCCCCcEEEEEEEEEcCCC-------------------------------CCCccceeeeEEecCCcEEEEEcCCCCcH
Q 005203 493 LQRLMGRIDFVDVSFRYSSR-------------------------------EMVPVLQHVNISVNPGEVVAIAGLSGSGK 541 (709)
Q Consensus 493 ~~~~~~~I~~~nVsF~Y~~~-------------------------------~~~~vL~~lsl~I~~Ge~vAIVG~SGsGK 541 (709)
.....|+++|++|.|+.. ...++|+|+||+|++||.++|+|||||||
T Consensus 388 --~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGK 465 (1490)
T TIGR01271 388 --LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGK 465 (1490)
T ss_pred --CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCH
Confidence 112359999999999631 01368999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHH
Q 005203 542 STLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDF 621 (709)
Q Consensus 542 STLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~ 621 (709)
|||+++|+|+++|++|+|.+|| .||||+|+|++|++||+|||.||. ..++++..++++.++++++
T Consensus 466 STLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~L~~~ 530 (1490)
T TIGR01271 466 SSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGL--SYDEYRYTSVIKACQLEED 530 (1490)
T ss_pred HHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhcc--ccchHHHHHHHHHHhHHHH
Confidence 9999999999999999999998 499999999999999999999984 4567888889999999999
Q ss_pred HHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhhccCCCCcEEEEEec
Q 005203 622 IMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGV-LRAVRSDTMTRRTVLVIAH 698 (709)
Q Consensus 622 I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~-L~~l~~~~~~~~TvIiIAH 698 (709)
+..+|+|++|.+|+ .+|||||||||+||||+|++|+|++||||||+||+++++.|.+. +.++.+ ++|+|+|||
T Consensus 531 l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~----~~tvilvtH 606 (1490)
T TIGR01271 531 IALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMS----NKTRILVTS 606 (1490)
T ss_pred HHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc----CCeEEEEeC
Confidence 99999999999999 49999999999999999999999999999999999999999985 566543 599999999
Q ss_pred ChhhhhhhcC
Q 005203 699 RLISTALSFD 708 (709)
Q Consensus 699 Rlsti~~~~~ 708 (709)
+++.+.. +|
T Consensus 607 ~~~~~~~-ad 615 (1490)
T TIGR01271 607 KLEHLKK-AD 615 (1490)
T ss_pred ChHHHHh-CC
Confidence 9998765 66
No 45
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.7e-57 Score=567.92 Aligned_cols=510 Identities=16% Similarity=0.179 Sum_probs=391.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 005203 175 DLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLC---VTSGICSGLRGCCFGIANMI 251 (709)
Q Consensus 175 ~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~---~~~~~~~~lr~~~~~~~~~~ 251 (709)
.+.+.+++.++..+++.++..++.++.|++++..+......+.. ......++.+++ ++.+++...+.+.....+.+
T Consensus 237 ~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~-~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 315 (1560)
T PTZ00243 237 TLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNAT-WGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQ 315 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888888999999999999988776432111211 111111221222 22334444455666777888
Q ss_pred HHHHHHHHHHHHHHcCCchhhc--cCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005203 252 LVKRMRETLYSALLLQDISFFD--SETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLM 329 (709)
Q Consensus 252 l~~~lr~~lf~~Ll~lp~~~fe--~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~ 329 (709)
+...+...+|+|.++++...+. +.++|++++.+++|++.+++++ ..+..++...+..++++++|+.+-.+.+++.++
T Consensus 316 ~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~-~~~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~ 394 (1560)
T PTZ00243 316 YRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFM-QYCMYLWSSPMVLLLSILLLSRLVGWCALMAVA 394 (1560)
T ss_pred HHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 8888999999999999988776 5689999999999999999998 445566667777777788887777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 330 ICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNL 409 (709)
Q Consensus 330 ~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 409 (709)
++++.+.+..+..+...+.+++..+..++..+...|.++||++||.++.|+.+.+|+.+..++..+...+......+...
T Consensus 395 vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~ 474 (1560)
T PTZ00243 395 VLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSF 474 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666656666667777777777777888889999999999999999999999888887665554443333333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----
Q 005203 410 CFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQ---- 485 (709)
Q Consensus 410 ~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~---- 485 (709)
+......+ +.++.++++.+..|.+|+|.+++.+++.+.+..|+..+...+..+.++.++.+|+.++++.++...
T Consensus 475 ~~~~~p~l--~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~ 552 (1560)
T PTZ00243 475 VNNATPTL--MIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQ 552 (1560)
T ss_pred HHHHHHHH--HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccc
Confidence 22222211 233456788888999999999999999999999999999999999999999999999997653100
Q ss_pred cc-c---------c--c---------------cc---------------------------ccCCCCcEEEEEEEEEcCC
Q 005203 486 FM-S---------K--G---------------KK---------------------------LQRLMGRIDFVDVSFRYSS 511 (709)
Q Consensus 486 ~~-~---------~--~---------------~~---------------------------~~~~~~~I~~~nVsF~Y~~ 511 (709)
.. . . . .. .....+.+.++|++|.++.
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1560)
T PTZ00243 553 DMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPS 632 (1560)
T ss_pred cchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccc
Confidence 00 0 0 0 00 0001135778888887541
Q ss_pred C-------------------------------------CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 005203 512 R-------------------------------------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP 554 (709)
Q Consensus 512 ~-------------------------------------~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p 554 (709)
. .+.++|+|+||+|++||.++|+||||||||||+++|+|+++|
T Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~ 712 (1560)
T PTZ00243 633 SASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI 712 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 0 124589999999999999999999999999999999999999
Q ss_pred CcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccC
Q 005203 555 TNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVD 634 (709)
Q Consensus 555 ~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vG 634 (709)
++|+|.++ ++||||+|+|.+|++||+|||.++. ..+++++.++++.++++++++.+|+|++|.+|
T Consensus 713 ~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~--~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~ 777 (1560)
T PTZ00243 713 SEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFD--EEDAARLADAVRVSQLEADLAQLGGGLETEIG 777 (1560)
T ss_pred CCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCC--hhhHHHHHHHHHHhhhHHHHHHhhccchHHhc
Confidence 99999863 5799999999999999999999984 34677889999999999999999999999999
Q ss_pred C--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 635 D--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVL-RAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 635 e--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L-~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+ .+|||||||||+||||||++|++++||||||+||+++++.+.+.+ ....+ ++|+|+|||+++.+.. +|
T Consensus 778 ~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~----~~TvIlvTH~~~~~~~-ad 849 (1560)
T PTZ00243 778 EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA----GKTRVLATHQVHVVPR-AD 849 (1560)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhC----CCEEEEEeCCHHHHHh-CC
Confidence 9 499999999999999999999999999999999999988887654 33322 5899999999998754 44
No 46
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-56 Score=537.24 Aligned_cols=502 Identities=22% Similarity=0.240 Sum_probs=370.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH--HHHH--HHHHHHHHHH
Q 005203 177 VSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICS--GLRG--CCFGIANMIL 252 (709)
Q Consensus 177 ~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~--~lr~--~~~~~~~~~l 252 (709)
.+-+++.++...++..+......+.|.++...+....... .......+++++.++..++. ..+. +.....+.++
T Consensus 196 ~~~f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~--~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~ 273 (1381)
T KOG0054|consen 196 LRTFGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKR--LPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRL 273 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCC--cccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhH
Confidence 4445666655555555666667789988877664332221 11111122222221111111 1122 2234556666
Q ss_pred HHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005203 253 VKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICS 332 (709)
Q Consensus 253 ~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~ 332 (709)
..-+-..+|++.+++...--....+|++++-++.|++++++.. ..+..+....+..++++.+++..=.+-+++.++.+.
T Consensus 274 R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~-~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~i 352 (1381)
T KOG0054|consen 274 RSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAA-CFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMV 352 (1381)
T ss_pred HHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 6777778899999999887778899999999999999999876 344556666667777666665433333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 333 ALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFN 412 (709)
Q Consensus 333 l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (709)
+++.+..+..+..++.+++..+..++.-....|.+.||++||.|+.|+.+.++.++.-++ .++.-+..+....+..
T Consensus 353 l~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~----El~~lrk~~~~~~~~~ 428 (1381)
T KOG0054|consen 353 LLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQK----ELKLLRKSAYLSALNS 428 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 444445566777777777777777788889999999999999999999766666554443 3333323333333332
Q ss_pred HHHHH--HHHHHHHHHHHH-HHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 005203 413 MLYHS--TQVIAVLIGGMF-IMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSK 489 (709)
Q Consensus 413 ~i~~~--~~i~vl~~ga~l-V~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~ 489 (709)
.+... ..+.++.++++. ...+.+|....++.+++...+..|+..+...+..+.++.++.+|+.+++..++.+.....
T Consensus 429 ~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~ 508 (1381)
T KOG0054|consen 429 FLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVE 508 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccc
Confidence 32211 122334444444 446678887888888999999999999999999999999999999999987543321111
Q ss_pred cccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC
Q 005203 490 GKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV 569 (709)
Q Consensus 490 ~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~ 569 (709)
.....+....|+++|.+|++++.+.++.|+||||+|++|+.+||||+.|||||+|+..|+|..+..+|+|.++|.
T Consensus 509 ~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----- 583 (1381)
T KOG0054|consen 509 RSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----- 583 (1381)
T ss_pred cCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-----
Confidence 012222344699999999998643456999999999999999999999999999999999999999999999996
Q ss_pred CHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCC--CCChHHHHHHH
Q 005203 570 DIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD--LLSGGQKQRIA 647 (709)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~--~LSGGQkQRIa 647 (709)
+|||||+|++|+|||||||.||. +.|+++-.++.+.|++..|++.||.|-.|.|||+ +|||||||||+
T Consensus 584 --------iaYv~Q~pWI~ngTvreNILFG~--~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIs 653 (1381)
T KOG0054|consen 584 --------VAYVPQQPWIQNGTVRENILFGS--PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRIS 653 (1381)
T ss_pred --------EEEeccccHhhCCcHHHhhhcCc--cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHH
Confidence 99999999999999999999994 6899999999999999999999999999999994 99999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhccCCCCcEEEEEecChhhhh
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVL-RAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L-~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
||||+|+|++|.+||+|.||+|+++.+.|.+.. +.+- +++|+|.|||.++.+.
T Consensus 654 LARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L----~~KT~ILVTHql~~L~ 707 (1381)
T KOG0054|consen 654 LARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL----RGKTVILVTHQLQFLP 707 (1381)
T ss_pred HHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh----cCCEEEEEeCchhhhh
Confidence 999999999999999999999999999987665 3332 3699999999987543
No 47
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.1e-44 Score=406.38 Aligned_cols=468 Identities=19% Similarity=0.194 Sum_probs=340.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhH------HHHHHHHHHH
Q 005203 216 EIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGD------LTSRLGSDCQ 289 (709)
Q Consensus 216 d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gd------i~sRl~sdi~ 289 (709)
|...+.....++.+++.+......++.|+...+..+...-+...+.++.+.....|+- ...|. .=.|+..|+.
T Consensus 81 d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l-~~~~~~~~~dNpDQRi~eDi~ 159 (604)
T COG4178 81 DLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRL-AQAGGIGLIDNPDQRIQEDIR 159 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH-HhcccccCCCChHHhHHHHHH
Confidence 4334444444444555555555666666554444443333444444444554533333 33331 2278988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 005203 290 QVSRVIGNDLNLILRNVLQGTGALIYLIVLSW-----------PLGLCTLMICSALAGL----MLIYGLYQKKAAKLVQE 354 (709)
Q Consensus 290 ~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~-----------~Lalv~l~~~~l~~~i----~~~~~~~~~~~~~~~~~ 354 (709)
..-+.-......++.++++.+...++++..|. .+...++.++.+|++. ..++++...+...+..+
T Consensus 160 ~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~ 239 (604)
T COG4178 160 NFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQK 239 (604)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHH
Confidence 87776666666666666666666666663332 2233333333444433 33555555555544455
Q ss_pred HHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 005203 355 ITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGN 434 (709)
Q Consensus 355 ~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~ 434 (709)
..|.....+.-.-++.+.|-.|+.|+.|.++.++......+...+...+...+.++......+..++-+.+++-....|+
T Consensus 240 ~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~ 319 (604)
T COG4178 240 LEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQ 319 (604)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCc
Confidence 56777888888889999999999999999888888887777555554445555555555555555777788888889999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCccccccccc---cCCCCcEEEEEE
Q 005203 435 ITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDL------MPSDQFMSKGKKL---QRLMGRIDFVDV 505 (709)
Q Consensus 435 lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~------~~e~~~~~~~~~~---~~~~~~I~~~nV 505 (709)
++.|.++.-....+++...+.++.+++..+........|+.++.+. +++.. ...+... ......|+++||
T Consensus 320 i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~nl 398 (604)
T COG4178 320 ITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKP-ARTGRRIDFDDNADHGITLENL 398 (604)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCccccc-CcccccccccccccceeEEeee
Confidence 9999999888888899999999999999999999999999988743 22211 1111100 001357999999
Q ss_pred EEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccC
Q 005203 506 SFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEP 585 (709)
Q Consensus 506 sF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~ 585 (709)
+..-|+. ...++++|++|++||.+-|.||||||||||++.|+|+++.-+|+|-.- . -..+-++||.|
T Consensus 399 ~l~~p~~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P----~-------~~~~lflpQ~P 465 (604)
T COG4178 399 SLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP----A-------DSALLFLPQRP 465 (604)
T ss_pred eEECCCC--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC----C-------CCceEEecCCC
Confidence 9999865 489999999999999999999999999999999999999999988763 1 12478999999
Q ss_pred cccccCHHHHhccCCCC-CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 005203 586 KLFRMDISSNISYGCTQ-DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEA 664 (709)
Q Consensus 586 ~LF~gTI~eNI~~g~~~-~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEa 664 (709)
++=.||+||=|+|-++. +.+|+++.+++.++|+.+++++|.+- +. =+.-|||||||||+.||.|+++|++++||||
T Consensus 466 Y~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-~~--W~~vLS~GEqQRlafARilL~kP~~v~LDEA 542 (604)
T COG4178 466 YLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-DR--WDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542 (604)
T ss_pred CCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-Cc--HhhhcChhHHHHHHHHHHHHcCCCEEEEecc
Confidence 99999999999998763 38999999999999999999996311 11 0147999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 665 TSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 665 TSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
|||||+++|.++.+.+++.. ++.|+|-|+||+....+
T Consensus 543 TsALDe~~e~~l~q~l~~~l----p~~tvISV~Hr~tl~~~ 579 (604)
T COG4178 543 TSALDEETEDRLYQLLKEEL----PDATVISVGHRPTLWNF 579 (604)
T ss_pred hhccChHHHHHHHHHHHhhC----CCCEEEEeccchhhHHH
Confidence 99999999999999997643 46999999999975443
No 48
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.7e-48 Score=407.65 Aligned_cols=202 Identities=29% Similarity=0.442 Sum_probs=188.1
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
|.|+++||+|+|++. .+++|+|+||+|++||+++|+||||||||||+++|.|+++ ++|+|++||.|+..++...+|+.
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999753 3679999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccC
Q 005203 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~ 655 (709)
|+||+|++.+|++|++||+..+. ..++++++++++.+++++++.++|.||||.++| .+||||||||++|||||+++
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG--KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc--CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999997552 356899999999999999999999999999998 59999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 656 PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+||+|||||++||+++++.+++.|++..+ ++|+|+||||++++.. +|
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~~----~~tii~isH~~~~i~~-~d 204 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFA----DCTVILSEHRIEAMLE-CQ 204 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcC----CCEEEEEECCHHHHHh-CC
Confidence 999999999999999999999999998653 5999999999999875 55
No 49
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-46 Score=369.57 Aligned_cols=195 Identities=34% Similarity=0.495 Sum_probs=171.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC-CCCHHHHhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK-EVDIKWLRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~-~~~~~~lR~~ 577 (709)
-|+++||+.+|++ ..||+|||++|++||.++|+||||||||||+++|.||-+|++|+|.+||.++. ..+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 3899999999984 46999999999999999999999999999999999999999999999998773 3378899999
Q ss_pred eEEEcccCccc-ccCHHHHhccCCC--CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 578 IGFVGQEPKLF-RMDISSNISYGCT--QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 578 I~~V~Qd~~LF-~gTI~eNI~~g~~--~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
+|+|+|+..|| .-|+.|||+++.- ...+ +++-.+.++++|+.|-..+.|.. |||||+||+||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~q---------LSGGQqQRVAIAR 149 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQ---------LSGGQQQRVAIAR 149 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccc---------cCcHHHHHHHHHH
Confidence 99999999999 7899999998721 1222 34445677788888888887755 9999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||.-+|+++++||||||||||.-..+.+.++++.++ |.|.|+|||...-.+.-+|
T Consensus 150 ALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e---GmTMivVTHEM~FAr~Vad 204 (240)
T COG1126 150 ALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE---GMTMIIVTHEMGFAREVAD 204 (240)
T ss_pred HHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc---CCeEEEEechhHHHHHhhh
Confidence 999999999999999999999999999999999876 8999999999876665444
No 50
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-46 Score=367.13 Aligned_cols=199 Identities=34% Similarity=0.512 Sum_probs=174.9
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-----ceEEECCEeCCC--CC
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN-----GQILIDGFPIKE--VD 570 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~-----G~I~idG~di~~--~~ 570 (709)
..++++||++.|.+ ..+|+|||++|++++.+|++|||||||||+++++-|+.+..+ |+|.+||+|+.+ ++
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 35899999999984 579999999999999999999999999999999999999987 999999999976 57
Q ss_pred HHHHhcceEEEcccCcccccCHHHHhccCCC-----CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHH
Q 005203 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCT-----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (709)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-----~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (709)
...+|++||+|+|.|.-|..||.||++||.. +..-+|.++++++.|+++|.+.. .++. ...+|||||+||
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL~~--sa~~LSGGQQQR 157 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RLHK--SALGLSGGQQQR 157 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---HhhC--CccCCChhHHHH
Confidence 8999999999999999999999999999931 01224667889999999999863 1211 113699999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+||||||.-+|+||+|||||||||+.+..+|.+.|.+++++ -|+|+|||.+.-.++--|
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~----yTIviVTHnmqQAaRvSD 216 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKK----YTIVIVTHNMQQAARVSD 216 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhc----cEEEEEeCCHHHHHHHhH
Confidence 99999999999999999999999999999999999999865 899999999987665443
No 51
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-42 Score=361.90 Aligned_cols=498 Identities=18% Similarity=0.191 Sum_probs=350.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 174 WDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILV 253 (709)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~ 253 (709)
+.+.|++++.++....+++++.+.++..-.++....... .+... .-...+.+++++..+.+.+.+.....+++.+.
T Consensus 5 l~llr~nr~~~i~~~a~s~a~g~~g~~lLa~in~al~e~--~~~~~--~~l~~f~~llllf~~ss~is~lg~t~~gq~~I 80 (546)
T COG4615 5 LLLLRQNRWPFISVMALSLASGALGIGLLAFINQALIET--ADTSL--LVLPEFLGLLLLFMVSSLISQLGLTTLGQHFI 80 (546)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccce--eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888877776654433332221111 11100 11223444555566677778888889999999
Q ss_pred HHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005203 254 KRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSA 333 (709)
Q Consensus 254 ~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~l 333 (709)
.++|.++.++++.-|+..+|+...+.++.++++|+..|. +-...++.+.+.++..+++++++.+.||++.+++++.+.+
T Consensus 81 ~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv 159 (546)
T COG4615 81 YKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVV 159 (546)
T ss_pred HHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 4445567788888899999999999999999988887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 334 LAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQ--EVKRYKHWLGKLADINLRQSAAYGFWNLCF 411 (709)
Q Consensus 334 ~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (709)
.++.-.+......+..+...+...+.+...+..+.|.++++......+ ..+++....+...+. .. ....+....
T Consensus 160 ~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~---~~-~~n~f~~la 235 (546)
T COG4615 160 TIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHH---II-RANTFHLLA 235 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhh---hh-hhhHHHHHH
Confidence 665533333333344444555567888999999999999998754332 112222222222221 11 111121111
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 005203 412 NMLYHSTQVIAVLIGGMFIMR-GNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKG 490 (709)
Q Consensus 412 ~~i~~~~~i~vl~~ga~lV~~-G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~~ 490 (709)
....++....++.+..|+... +--+.-....+.+-...+-.|+.+++..+..+.++.++.+++.++-..|+...... .
T Consensus 236 ~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~-~ 314 (546)
T COG4615 236 VNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPR-P 314 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCC-C
Confidence 111222222222222223322 22222222333333444567777888888888899999999998876544322111 1
Q ss_pred ccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC
Q 005203 491 KKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD 570 (709)
Q Consensus 491 ~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~ 570 (709)
...++ -..||++||.|.|++. .-=+..||++|++||.|-|+|.+||||||+++||.|+|+|++|+|++||.|++.-+
T Consensus 315 q~~p~-~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ 391 (546)
T COG4615 315 QAFPD-WKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQ 391 (546)
T ss_pred CcCCc-ccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCC
Confidence 11222 3469999999999864 25678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC-----CCCChHHHHH
Q 005203 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-----DLLSGGQKQR 645 (709)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe-----~~LSGGQkQR 645 (709)
+++||+.++.|+-|-+||..++ +.+..++++.+.+-++.-.+.. .|-+.+ ..||-|||.|
T Consensus 392 ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~---------ktsl~d~~fs~~kLStGQkKR 456 (546)
T COG4615 392 LEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAH---------KTSLNDGRFSNLKLSTGQKKR 456 (546)
T ss_pred HHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhh---------hhcccCCcccccccccchHHH
Confidence 9999999999999999999875 3222367777776665554433 333333 3799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
+|+-=||+-+.||++|||=-+-=||.=.+...+.+.-+-|+ .|+|++.|||+-.
T Consensus 457 lAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~--qGKTI~aIsHDd~ 510 (546)
T COG4615 457 LALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKE--QGKTIFAISHDDH 510 (546)
T ss_pred HHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHH--hCCeEEEEecCch
Confidence 99999999999999999999999999999998887543333 4899999999864
No 52
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.8e-45 Score=373.02 Aligned_cols=203 Identities=41% Similarity=0.635 Sum_probs=188.3
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
+.|+++|++++|++. +.++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999853 2579999999999999999999999999999999999999999999999999998888899999
Q ss_pred eEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccC
Q 005203 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~ 655 (709)
++|++|++.+|++|++|||.+++ ..+.+++.++++..++.+++.++|.|++|.++. ..||||||||++|||||+++
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999874 456788999999999999999999999999886 59999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 656 PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|||||||++||+.+.+.+.+.|+++.+ +.|+|++||+++.+.. +|
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sh~~~~~~~-~d 205 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIREAFK----DCTVLTIAHRLDTIID-SD 205 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcC----CCEEEEEeCCHHHHhh-CC
Confidence 999999999999999999999999998753 4899999999998865 55
No 53
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=3.6e-45 Score=377.27 Aligned_cols=202 Identities=49% Similarity=0.740 Sum_probs=185.3
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.|+
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999753 257999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCC
Q 005203 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPT 657 (709)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ 657 (709)
|++|++.+|+.|+.|||.++.. ..+.+++.++++..++++++..+|.|+++..+. .+||||||||++|||||+++|+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEcCCchhccchHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999998754 456677888888899999999999999998876 5999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 658 ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||||++||+++...+.+.|+++.+ ++|+|++||+++.+.. +|
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tiii~sH~~~~~~~-~d 204 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDICA----GRTVIIIAHRLSTVKN-AD 204 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcC----CCEEEEEeCCHHHHHh-CC
Confidence 9999999999999999999999998753 5899999999998854 55
No 54
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-45 Score=394.21 Aligned_cols=200 Identities=32% Similarity=0.503 Sum_probs=172.3
Q ss_pred CCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCC--CC
Q 005203 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIK--EV 569 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-----p~~G~I~idG~di~--~~ 569 (709)
.+.|+++||+|+|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+|+. ..
T Consensus 78 ~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred CceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 4579999999999753 3679999999999999999999999999999999999997 57999999999997 34
Q ss_pred CHHHHhcceEEEcccCcccccCHHHHhccCCC-CCCCHHHH-----HHHHHHHhhHHHHHcCCCCcccccCC--CCCChH
Q 005203 570 DIKWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDIKQQDI-----EWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGG 641 (709)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~~~e~i-----~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGG 641 (709)
+...+|+.++||||+|.+|++||+|||.|+.. ...++++. .++++.+++ +.++++.+++ .+||||
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LSgG 229 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALSGG 229 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCCHH
Confidence 56788999999999999999999999998631 12333433 445555554 4455677777 599999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 642 QkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||++|||||+++|+||+||||||+||+++.+.+.+.|+++.+ ++|+|+|||+++++...+|
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~----~~Tii~iTH~l~~i~~~~D 292 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK----KYSIIIVTHSMAQAQRISD 292 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999999999998865 4899999999999987666
No 55
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-45 Score=378.75 Aligned_cols=199 Identities=33% Similarity=0.496 Sum_probs=176.2
Q ss_pred EEEEEEEEEcCCC--CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC---HHHH
Q 005203 500 IDFVDVSFRYSSR--EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD---IKWL 574 (709)
Q Consensus 500 I~~~nVsF~Y~~~--~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~---~~~l 574 (709)
|+++|||+.|+.. ....+++|+||+|++||+.+|+|.||+|||||++++-||-+|++|+|.+||+|+..++ +...
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999862 1256999999999999999999999999999999999999999999999998887776 5677
Q ss_pred hcceEEEcccCcccc-cCHHHHhccCC-----CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 575 RGRIGFVGQEPKLFR-MDISSNISYGC-----TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 575 R~~I~~V~Qd~~LF~-gTI~eNI~~g~-----~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
|++||+++|+..|++ .|+.||++|-- ++..-++++.+.++.+|+.|+-.+-| .+||||||||++|
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP---------~qLSGGQKQRVaI 152 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP---------AQLSGGQKQRVAI 152 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc---------hhcCcchhhHHHH
Confidence 889999999999997 99999999842 11223466778888899888877765 4599999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcCC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFDC 709 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~~ 709 (709)
||||..+|+||+.|||||||||+|.+.|.+.|+++.+. .|.|+++|||-++.+..-||.
T Consensus 153 ARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~--lglTIvlITHEm~Vvk~ic~r 211 (339)
T COG1135 153 ARALANNPKILLCDEATSALDPETTQSILELLKDINRE--LGLTIVLITHEMEVVKRICDR 211 (339)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHH--cCCEEEEEechHHHHHHHhhh
Confidence 99999999999999999999999999999999988754 479999999999999998884
No 56
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.3e-45 Score=372.14 Aligned_cols=203 Identities=49% Similarity=0.786 Sum_probs=187.0
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
+.|+++|++|+|++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 368999999999742 469999999999999999999999999999999999999999999999999988888889999
Q ss_pred eEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccC
Q 005203 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~ 655 (709)
++|++|++.+|++|++||+.++.+ ..+.+++.++++..++.++..++|.|+++.++. ..||||||||++|||||+++
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999854 456778888999999999999999999999877 59999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 656 PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. +|
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sh~~~~~~~-~d 205 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMK----GRTSIIIAHRLSTIKN-AD 205 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcC----CCEEEEEecCHHHHhh-CC
Confidence 999999999999999999999999998753 5899999999998764 55
No 57
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2e-44 Score=369.11 Aligned_cols=207 Identities=51% Similarity=0.781 Sum_probs=185.9
Q ss_pred CCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHh
Q 005203 496 LMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLR 575 (709)
Q Consensus 496 ~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR 575 (709)
..+.|+++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 34679999999999854224799999999999999999999999999999999999999999999999999888878888
Q ss_pred cceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhc
Q 005203 576 GRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 576 ~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALl 653 (709)
+.++|++|++.+|++|++||+.++.. ..+.+++.+.++..++++++..+|.|+++.+.. ..||||||||++|||||+
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998743 445556666677778899999999999998877 599999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+.. +|
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sh~~~~~~~-~d 216 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPE----RRTVLVIAHRLSTVER-AD 216 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC----CCEEEEEECCHHHHHh-CC
Confidence 99999999999999999999999999998753 3899999999998865 65
No 58
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.4e-44 Score=373.96 Aligned_cols=206 Identities=35% Similarity=0.567 Sum_probs=188.8
Q ss_pred CCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHH
Q 005203 495 RLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL 574 (709)
Q Consensus 495 ~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~l 574 (709)
...+.|+++||+++|++. +.++|+|+||+|+|||.+||+|+||||||||+++|+|+++|++|+|++||.++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 456789999999999753 2579999999999999999999999999999999999999999999999999999888899
Q ss_pred hcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHh
Q 005203 575 RGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAI 652 (709)
Q Consensus 575 R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL 652 (709)
|+.|+||+|++.+|++|++||+.... ...++++.++.+.+++++++..+|.|++|.+++ ..||||||||++|||||
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral 171 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAF 171 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999998652 235677888999999999999999999999987 59999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+++|++|||||||++||++++..+.+.++++.+ ++|+|++||+++.+.. +|
T Consensus 172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~----~~tiii~sh~~~~~~~-~d 222 (257)
T cd03288 172 VRKSSILIMDEATASIDMATENILQKVVMTAFA----DRTVVTIAHRVSTILD-AD 222 (257)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcC----CCEEEEEecChHHHHh-CC
Confidence 999999999999999999999999999988643 5899999999998875 54
No 59
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-44 Score=369.04 Aligned_cols=202 Identities=49% Similarity=0.791 Sum_probs=185.9
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999753 247999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCC
Q 005203 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPT 657 (709)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ 657 (709)
|++|++.+|..|++||+.++.. ..+.+++.++++..+++++++.+|.|+++.++. ..||||||||++|||||+++|+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EeCCCCeeccccHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999854 456677888888899999999999999999876 5999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 658 ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|+|||||++||+++...+.+.|+++.+ ++|+|++||+++.+.. +|
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sh~~~~~~~-~d 204 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLMK----NRTTFVIAHRLSTIEN-AD 204 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcC----CCEEEEEecCHHHHhh-CC
Confidence 9999999999999999999999998753 4899999999998865 65
No 60
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=4.5e-44 Score=364.86 Aligned_cols=204 Identities=43% Similarity=0.669 Sum_probs=185.5
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
++|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999753 2579999999999999999999999999999999999999999999999999988887788899
Q ss_pred eEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccC
Q 005203 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~ 655 (709)
++|++|++.+|..|++||+.++.. ..+++++.++++..++.+.+.+.|.|++|.+.+ ..||||||||++||||++.+
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998744 445678889999999999999999999999877 59999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 656 PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+ .-+|
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~-~~~d 206 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLG----DKTLIIITHRPSLL-DLVD 206 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcC----CCEEEEEeCCHHHH-HhCC
Confidence 999999999999999999999999998754 27999999999865 3455
No 61
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-44 Score=369.28 Aligned_cols=201 Identities=50% Similarity=0.765 Sum_probs=185.7
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++|++++|++. ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999742 46999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCC
Q 005203 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPT 657 (709)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ 657 (709)
|++|++.+|++|++||+.++.. +.+++++.++++..++.+.+..+|.|++|.++. ..||||||||++|||||+++|+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EECCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999854 556777888889999999999999999999876 5999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 658 ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||||++||+++...+.+.|.++.+ +.|+|++||+++.+.. +|
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tiii~sh~~~~~~~-~d 203 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSK----GRTTIVIAHRLSTIVN-AD 203 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcC----CCEEEEEcCCHHHHHh-CC
Confidence 9999999999999999999999988753 4899999999998865 55
No 62
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.6e-44 Score=367.34 Aligned_cols=196 Identities=32% Similarity=0.487 Sum_probs=169.0
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH---HHhc
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK---WLRG 576 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~---~lR~ 576 (709)
|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999743 24699999999999999999999999999999999999999999999999999776543 4788
Q ss_pred ceEEEcccCcccc-cCHHHHhccCC-----CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 577 RIGFVGQEPKLFR-MDISSNISYGC-----TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~-----~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
.++||+|++.+|. .|++||+.++. +.+..++++.++++..++.++..+.| ..||||||||++|||
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~lar 151 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP---------MQLSGGEQQRVAIAR 151 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence 9999999999986 59999998741 11123456777888888777665554 369999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+++|++|||||||++||+++.+.+.+.|+++.+. ++|+|+|||+++.+..-+|
T Consensus 152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~---~~tii~vsH~~~~~~~~~d 206 (216)
T TIGR00960 152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR---GTTVLVATHDINLVETYRH 206 (216)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999987542 5899999999998876665
No 63
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=9.7e-44 Score=358.51 Aligned_cols=190 Identities=35% Similarity=0.473 Sum_probs=171.0
Q ss_pred EEEEEEEEEcCCCCC--CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 500 IDFVDVSFRYSSREM--VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~--~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
|+++||+++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999975311 3799999999999999999999999999999999999999999999999 6
Q ss_pred eEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccC
Q 005203 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~ 655 (709)
|+||+|++.+|++|++|||.++. ..++++..++++.+++.+++..+|+|++|.++. ..||||||||++|||||+++
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~ 145 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD 145 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC--CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999973 345677888899999999999999999999987 58999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-HHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 656 PTILILDEATSALDAESEHNIKGV-LRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~-L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++++|||||++||+++.+.+.+. +++..++ ++|+|+|||+++.+.. +|
T Consensus 146 p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~---~~tvi~~sh~~~~~~~-~d 195 (204)
T cd03250 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLLN---NKTRILVTHQLQLLPH-AD 195 (204)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhccC---CCEEEEEeCCHHHHhh-CC
Confidence 999999999999999999988874 5555332 5899999999998876 65
No 64
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.5e-44 Score=367.86 Aligned_cols=196 Identities=32% Similarity=0.479 Sum_probs=178.1
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.++++||||+|++ +++++|+||+|++||.++|+||||||||||+|+|+|+.+|.+|+|++||+|+.+++.+++-+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999983 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccC-cccccCHHHHhccCCCC---------CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 579 GFVGQEP-KLFRMDISSNISYGCTQ---------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 579 ~~V~Qd~-~LF~gTI~eNI~~g~~~---------~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
|||||++ .-|.-|+.|=+.+|.-+ ..|++.+.+|++..++.++..+. + ..||||||||+.|
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~---~------~~LSGGerQrv~i 149 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP---V------DELSGGERQRVLI 149 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc---c------cccChhHHHHHHH
Confidence 9999994 67899999999988532 23555688999999999987652 3 3599999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||.++|+||+||||||+||..+.-+|++.++++.++ .|+|+|+|.|++...++.+|
T Consensus 150 ArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~--~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 150 ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE--KGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred HHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCC
Confidence 99999999999999999999999999999999998744 47999999999999988887
No 65
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=7.6e-44 Score=358.76 Aligned_cols=197 Identities=35% Similarity=0.525 Sum_probs=164.9
Q ss_pred EEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH---HHH-
Q 005203 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI---KWL- 574 (709)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~---~~l- 574 (709)
++++||+..|.... ...+|+++||+|++||.+||+||||||||||+++|.|+..|++|+|.++|.|+..++. ..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57999999997432 2479999999999999999999999999999999999999999999999999999884 334
Q ss_pred hcceEEEcccCccc-ccCHHHHhcc----CCCCC-CCHHHHHHHHHHHhhHHHHH-cCCCCcccccCCCCCChHHHHHHH
Q 005203 575 RGRIGFVGQEPKLF-RMDISSNISY----GCTQD-IKQQDIEWAAKQAYAHDFIM-SLPSGYETLVDDDLLSGGQKQRIA 647 (709)
Q Consensus 575 R~~I~~V~Qd~~LF-~gTI~eNI~~----g~~~~-~~~e~i~~aa~~a~l~d~I~-~LP~GydT~vGe~~LSGGQkQRIa 647 (709)
|++||+|+|+..|+ +-|+.|||.+ ...+. ..++++.+.++..|+.+... ..| ..||||||||+|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p---------~eLSGGqqQRVA 152 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP---------SELSGGQQQRVA 152 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc---------hhcCHHHHHHHH
Confidence 45699999999988 6799999984 21111 12456666777777766555 444 359999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||+.+|+|++.||||++||.++.+.|.+.++++.++ .|+|+|+|||++.. +..+|
T Consensus 153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~--~g~tii~VTHd~~l-A~~~d 210 (226)
T COG1136 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE--RGKTIIMVTHDPEL-AKYAD 210 (226)
T ss_pred HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHH-HHhCC
Confidence 999999999999999999999999999999999988643 36899999999975 44554
No 66
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=9.7e-44 Score=366.84 Aligned_cols=203 Identities=56% Similarity=0.906 Sum_probs=184.7
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++|++++|++..+.++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997532357999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCC
Q 005203 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPT 657 (709)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ 657 (709)
|++|++.+|+.|++||+.++.. ....+++.+.++..++.+++..+|.|+++.++. ..||||||||++|||||+.+|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EECCchhhhhhhHHHHhhccCC-CCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998754 445677788888889999999999999998876 5999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 658 ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+. .+|
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~~----g~~vi~~sh~~~~~~-~~d 205 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAMK----GRTTIVIAHRLSTIR-NAD 205 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcC----CCEEEEEeCCHHHHh-hCC
Confidence 9999999999999999999999988752 589999999999886 455
No 67
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-44 Score=362.84 Aligned_cols=192 Identities=33% Similarity=0.575 Sum_probs=171.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++|++|+|.+. ++|+||||+|++||.+||+||||||||||+|+|+|+.+|++|+|.++|.+.+.... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999742 59999999999999999999999999999999999999999999999998876443 6789
Q ss_pred EEEccc---CcccccCHHHHhccCCCC---------CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005203 579 GFVGQE---PKLFRMDISSNISYGCTQ---------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (709)
Q Consensus 579 ~~V~Qd---~~LF~gTI~eNI~~g~~~---------~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (709)
|||||. ++=|.-|++|=+.+|... ..|.+++.+|++.+|+.++..+ | + ..|||||+||+
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-~------i--~~LSGGQ~QRV 148 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-Q------I--GELSGGQKQRV 148 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-c------c--cccCcHHHHHH
Confidence 999994 456999999999987432 1246999999999999987654 2 2 25999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 647 aLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.|||||..+|++|+|||||+++|+.++..|.+.|++++++ |+|+++|+|+++.+..-+|
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e---g~tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE---GKTVLMVTHDLGLVMAYFD 207 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCcHHhHhhCC
Confidence 9999999999999999999999999999999999999864 7999999999999988777
No 68
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.7e-44 Score=358.40 Aligned_cols=188 Identities=36% Similarity=0.540 Sum_probs=166.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.+++++|+.+|++ ..+|+|+||+|++||.|+|+||||||||||++++.||.+|++|+|.++|.++...+ ..+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCE
Confidence 4889999999985 57999999999999999999999999999999999999999999999999985544 569
Q ss_pred EEEcccCcccc-cCHHHHhccCCCC-----CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 579 GFVGQEPKLFR-MDISSNISYGCTQ-----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~~-----~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
|||+|++.||. -|+.||+.++-.. ...++++.++++.+|+.+|-.+-|.. ||||||||+||||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~q---------LSGGMrQRVaiARAL 145 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQ---------LSGGMRQRVAIARAL 145 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccc---------cChHHHHHHHHHHHH
Confidence 99999999996 6999999998531 11345788899999999988887755 999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
..+|++|+||||.||||+.|...+++-+.++-++ .++|+++|||+.+....
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~--~~~TvllVTHdi~EAv~ 196 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEE--TRKTVLLVTHDVDEAVY 196 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHh
Confidence 9999999999999999999999999999876543 36999999999976543
No 69
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.5e-43 Score=382.81 Aligned_cols=198 Identities=29% Similarity=0.435 Sum_probs=171.3
Q ss_pred EEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHH---Hh
Q 005203 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW---LR 575 (709)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~---lR 575 (709)
|+++||+++|++.+ ..++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997422 247999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cceEEEcccCcccc-cCHHHHhccCCC-CCC----CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005203 576 GRIGFVGQEPKLFR-MDISSNISYGCT-QDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (709)
Q Consensus 576 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (709)
+.||||+|++.+|. .|++||+.++.. ... .++++.++++..++.+...+.| ..||||||||++||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~---------~~LSgGqkQRV~IA 152 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP---------SNLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHH
Confidence 89999999999995 899999987521 012 2345677888888877666554 36999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 650 RAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 650 RALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||+.+|++|+||||||+||+++...+.+.|+++.++ .+.|+|+|||+++.+..-||
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~--~g~tiiliTH~~~~v~~~~d 209 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRR--LGLTILLITHEMDVVKRICD 209 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999988642 25899999999999887776
No 70
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-43 Score=354.42 Aligned_cols=193 Identities=32% Similarity=0.540 Sum_probs=170.3
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+|+|||++|.+ ..+++|+||+|++||.++++|||||||||++|+|.||.+|++|+|+|||+|+++++...+|++||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 799999999983 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCccc-ccCHHHHhccCCCC--CCC----HHHHHHHHHHHhhH--HHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 580 FVGQEPKLF-RMDISSNISYGCTQ--DIK----QQDIEWAAKQAYAH--DFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 580 ~V~Qd~~LF-~gTI~eNI~~g~~~--~~~----~e~i~~aa~~a~l~--d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
||-|..-|| +.||.|||++- |. .-+ ++++.+.+++.|+. +|-.+.|. .|||||+||+.+||
T Consensus 79 YviQqigLFPh~Tv~eNIa~V-P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~---------eLSGGQQQRVGv~R 148 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATV-PKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH---------ELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhcccCCCccHHHHHHhh-hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch---------hcCcchhhHHHHHH
Confidence 999999999 78999999975 31 123 34556666777764 36566553 59999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhc
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSF 707 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~ 707 (709)
||..+|+||++|||.||||+-+.+++++-+.++.++ .++|+|+|||+.....+=.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~--l~kTivfVTHDidEA~kLa 203 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE--LGKTIVFVTHDIDEALKLA 203 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHH--hCCEEEEEecCHHHHHhhh
Confidence 999999999999999999999999999999888765 4799999999997654433
No 71
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.6e-43 Score=356.70 Aligned_cols=195 Identities=32% Similarity=0.479 Sum_probs=168.8
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH---HHhc
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK---WLRG 576 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~---~lR~ 576 (709)
|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.|+.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999963 25799999999999999999999999999999999999999999999999999877643 5788
Q ss_pred ceEEEcccCcccc-cCHHHHhccCC-----CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 577 RIGFVGQEPKLFR-MDISSNISYGC-----TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~-----~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
.++|++|++.+|. .|++||+.++. .+...++++.++++..++.++..+.| ..||||||||++|||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP---------EQLSGGEQQRVAIAR 150 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence 9999999999995 69999998752 11123456777888888777665544 369999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+++|++|||||||++||+++...+.+.|+++.+. ++|+|+|||+++.+..-+|
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~---~~tii~~tH~~~~~~~~~d 205 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKR---GTTVIVATHDLSLVDRVAH 205 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHhcC
Confidence 999999999999999999999999999999987542 5899999999998876666
No 72
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.6e-43 Score=355.18 Aligned_cols=200 Identities=27% Similarity=0.428 Sum_probs=176.6
Q ss_pred EEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH----HHHhc
Q 005203 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI----KWLRG 576 (709)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~----~~lR~ 576 (709)
.+.|++|+|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999854 579999999999999999999999999999999999999999999999998876542 34677
Q ss_pred ceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcc
Q 005203 577 RIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 577 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr 654 (709)
.++|++|++.+|+.|++|||.++.+ .++++..++++..++.+++..+|+|++|.++. ..||||||||++|||||++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP--FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc--CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 8999999999999999999998743 35667788889999999999999999999887 5999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHH--HHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 655 DPTILILDEATSALDAESEHNIKG--VLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~--~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++|||||||++||+++...+.+ .++.+++ .+.|+|++||+++.+.. +|
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~---~~~tii~~sH~~~~~~~-~d 209 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD---DKRTLVLVTHKLQYLPH-AD 209 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc---CCCEEEEEeCChHHHhh-CC
Confidence 999999999999999999998887 4555543 25899999999998753 55
No 73
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-43 Score=361.92 Aligned_cols=195 Identities=31% Similarity=0.473 Sum_probs=164.4
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH---HHHhc
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI---KWLRG 576 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~---~~lR~ 576 (709)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999973 469999999999999999999999999999999999999999999999999987764 57889
Q ss_pred ceEEEcccCccccc-CHHHHhccCCC--CCCCH----HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005203 577 RIGFVGQEPKLFRM-DISSNISYGCT--QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (709)
Q Consensus 577 ~I~~V~Qd~~LF~g-TI~eNI~~g~~--~~~~~----e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (709)
.|+||+|++.+|.+ |++||+.++.. ...+. +++.++++..++.++..+.| ..||||||||++||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~ia 148 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP---------AELSGGMKKRVALA 148 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 99999999999986 99999987521 01232 33455555555544433322 36999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 650 RAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 650 RALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||+++|++|||||||++||+++.+.+.+.|+++.+. .++|+|+|||+++.+..-+|
T Consensus 149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~vsH~~~~~~~~~d 205 (235)
T cd03261 149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE--LGLTSIMVTHDLDTAFAIAD 205 (235)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhcC
Confidence 9999999999999999999999999999999987531 25899999999998876666
No 74
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.6e-43 Score=355.98 Aligned_cols=195 Identities=33% Similarity=0.567 Sum_probs=166.6
Q ss_pred EEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEE
Q 005203 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (709)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~ 580 (709)
+++||+++|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999753 2569999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EcccC--cccccCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 581 VGQEP--KLFRMDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 581 V~Qd~--~LF~gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
++|++ .++..|++||+.++.. ...+ ++++.++++..++.+++.+.| ..||||||||++|||||+
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~laral~ 150 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP---------FTLSGGQKQRVAIAGVLA 150 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHHHHHHHHHHHHh
Confidence 99998 4678999999987521 0112 234556666666665554433 469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++||||||||+||+++.+.+.+.|+++.++ ++|+|+|||+++.+..-+|
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~---~~tvi~~sH~~~~~~~~~d 202 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAE---GKTIIIVTHDLDLLLELAD 202 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999987642 5899999999998877666
No 75
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-43 Score=373.09 Aligned_cols=195 Identities=31% Similarity=0.482 Sum_probs=175.0
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
..|+++||+.+|++. . +++|+||+|+.||.++|+||||||||||+++|+||.+|++|+|+|||.|+++++++. +.
T Consensus 2 ~~i~l~~v~K~yg~~--~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ 76 (338)
T COG3839 2 AELELKNVRKSFGSF--E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RG 76 (338)
T ss_pred cEEEEeeeEEEcCCc--e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CC
Confidence 368999999999853 2 999999999999999999999999999999999999999999999999999988875 88
Q ss_pred eEEEcccCccccc-CHHHHhccCCC-----CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005203 578 IGFVGQEPKLFRM-DISSNISYGCT-----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (709)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~-----~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (709)
||+|+|+..||.- |++|||+|+-. ++..++++.++++..++.+.+++.|.. ||||||||+|||||
T Consensus 77 iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~---------LSGGQrQRVAlaRA 147 (338)
T COG3839 77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQ---------LSGGQRQRVALARA 147 (338)
T ss_pred EEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCccc---------CChhhHHHHHHHHH
Confidence 9999999999955 99999999842 123478899999999999999999865 89999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|.|+|++++||||.|+||++....+...|+++.++ .+.|+|.|||+...+..-+|
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~--l~~T~IYVTHDq~EAmtlad 202 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER--LGTTTIYVTHDQVEAMTLAD 202 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh--cCCcEEEEcCCHHHHHhhCC
Confidence 99999999999999999999999999999887754 36899999999876554433
No 76
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=4.4e-43 Score=359.42 Aligned_cols=195 Identities=35% Similarity=0.564 Sum_probs=169.4
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC-----CCCcceEEECCEeCCCCC--HH
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY-----EPTNGQILIDGFPIKEVD--IK 572 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~-----~p~~G~I~idG~di~~~~--~~ 572 (709)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.+||.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999974 46999999999999999999999999999999999999 999999999999998776 66
Q ss_pred HHhcceEEEcccCcccccCHHHHhccCCCC-CC-----CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005203 573 WLRGRIGFVGQEPKLFRMDISSNISYGCTQ-DI-----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (709)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~-----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (709)
.+|+.|+||+|++.+|..|++||+.++... .. .++++.++++..++.+.+.+.++ ...||||||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-------~~~LSgG~~qrv 150 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH-------ALGLSGGQQQRL 150 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC-------cccCCHHHHHHH
Confidence 788999999999999999999999875310 11 23567777888887766555431 346999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 647 aLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||+++|++|||||||++||+++.+.+.+.|+++.++ +|+|+|||+++.+..-+|
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~----~tii~~sH~~~~~~~~~d 208 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE----YTIVIVTHNMQQAARVAD 208 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC----cEEEEEeccHHHHHHhCC
Confidence 9999999999999999999999999999999999988642 799999999998876666
No 77
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=373.62 Aligned_cols=200 Identities=29% Similarity=0.454 Sum_probs=165.9
Q ss_pred cEEEEEEEEEcCCCC--CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC-------
Q 005203 499 RIDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV------- 569 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~--~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~------- 569 (709)
.|+++||+|+|++.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997421 24699999999999999999999999999999999999999999999999998653
Q ss_pred ---------CHHHHhcceEEEcccC--cccccCHHHHhccCCC-CCCCHHHHHHHHHHHhhHHHHHcCCCCcc-cccCC-
Q 005203 570 ---------DIKWLRGRIGFVGQEP--KLFRMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYE-TLVDD- 635 (709)
Q Consensus 570 ---------~~~~lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~e~i~~aa~~a~l~d~I~~LP~Gyd-T~vGe- 635 (709)
+...+|+.||||+|++ .+|++|++|||.++.. .+.++++..+ . +++.+..+ |++ ...+.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcCC
Confidence 3567899999999998 7999999999998731 1234443322 1 22444444 443 33444
Q ss_pred -CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 636 -DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 636 -~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.+||||||||++|||||+++|++||||||||+||+.+++.+.+.|+++.+. ++|+|+|||+++.+...+|
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~---g~TiiivtHd~~~~~~~ad 244 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN---NKTVFVITHTMEHVLEVAD 244 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC---CCEEEEEecCHHHHHHhCC
Confidence 489999999999999999999999999999999999999999999887532 6899999999998876665
No 78
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2e-43 Score=339.27 Aligned_cols=192 Identities=32% Similarity=0.481 Sum_probs=174.7
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC---HHHHhc
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD---IKWLRG 576 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~---~~~lR~ 576 (709)
|+|+|||.+|++. +++|+|+||+|++||.+-+|||||||||||+|||++...|+.|+|.++|.|+..+. ...+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7999999999964 68999999999999999999999999999999999999999999999999998776 447999
Q ss_pred ceEEEcccCccc-ccCHHHHhccCC-----CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 577 RIGFVGQEPKLF-RMDISSNISYGC-----TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 577 ~I~~V~Qd~~LF-~gTI~eNI~~g~-----~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
+||+|+||-.|. +-|+.||++|.- ++..-.+++.++++.+|+.+-...+|.. |||||+||++|||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~---------LSGGEQQRvaIAR 150 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQ---------LSGGEQQRVAIAR 150 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccc---------cCchHHHHHHHHH
Confidence 999999999977 789999999742 2233357888999999999999999966 8999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
|+..+|++|+=||||.+||+++...|++.+.++.. .|.||++.||+.+.+..
T Consensus 151 AiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr---~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR---LGTTVLMATHDLELVNR 202 (223)
T ss_pred HHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh---cCcEEEEEeccHHHHHh
Confidence 99999999999999999999999999999988864 37999999999987753
No 79
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=5.8e-43 Score=355.05 Aligned_cols=195 Identities=33% Similarity=0.512 Sum_probs=166.1
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH---HHHhc
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI---KWLRG 576 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~---~~lR~ 576 (709)
|+++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999743 469999999999999999999999999999999999999999999999999987654 35788
Q ss_pred ceEEEcccCcccc-cCHHHHhccCCC-CCC----CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 577 RIGFVGQEPKLFR-MDISSNISYGCT-QDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
.|+||+|++.+|. .|++||+.++.. ... .++++.++++..++.+...+.| ..||||||||++|||
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar 149 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP---------AELSGGEQQRVAIAR 149 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHH
Confidence 9999999999998 599999987521 011 2345666677767666554443 369999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+++|++||||||||+||+++.+.+.+.|+++.+. ++|+|+|||+++.+..-+|
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~---~~tiiivtH~~~~~~~~~d 204 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA---GTTVVVATHAKELVDTTRH 204 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999987542 5899999999998876555
No 80
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=5.5e-43 Score=356.37 Aligned_cols=197 Identities=35% Similarity=0.501 Sum_probs=162.1
Q ss_pred EEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH----HH
Q 005203 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK----WL 574 (709)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~----~l 574 (709)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997421 14799999999999999999999999999999999999999999999999999877643 24
Q ss_pred hcceEEEcccCccccc-CHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 575 RGRIGFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 575 R~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
|+.++||+|++.+|.+ |++||+.++.. ...+ ++++.++++..++.+...+.| .+||||||||++|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 151 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP---------SELSGGQQQRVAI 151 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh---------hhcCHHHHHHHHH
Confidence 6789999999999986 99999987532 1111 234455555555444333322 4799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+++|++|||||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.+. .+|
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~-~~d 208 (218)
T cd03255 152 ARALANDPKIILADEPTGNLDSETGKEVMELLRELNKE--AGTTIVVVTHDPELAE-YAD 208 (218)
T ss_pred HHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEECCHHHHh-hhc
Confidence 99999999999999999999999999999999988641 1589999999999876 555
No 81
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.1e-43 Score=354.21 Aligned_cols=191 Identities=33% Similarity=0.518 Sum_probs=165.9
Q ss_pred EEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEE
Q 005203 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (709)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~ 580 (709)
+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ..+|+.|+|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999742 469999999999999999999999999999999999999999999999999864 467889999
Q ss_pred EcccC--cccccCHHHHhccCCCC-CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCC
Q 005203 581 VGQEP--KLFRMDISSNISYGCTQ-DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657 (709)
Q Consensus 581 V~Qd~--~LF~gTI~eNI~~g~~~-~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ 657 (709)
++|++ .+|..|++||+.++... ...++++.++++..++.++..+.|. .||||||||++|||||+++|+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPL---------SLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCch---------hCCHHHHHHHHHHHHHHhCCC
Confidence 99998 47899999999986421 1234578888888888777665553 599999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 658 ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|+|||||++||+++.+.+.+.|+++.+. ++|+|++||+++.+..-+|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~---~~tii~~sH~~~~~~~~~d 194 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRELAAQ---GKAVIVITHDYEFLAKVCD 194 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999987532 5899999999998876565
No 82
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=8e-43 Score=355.18 Aligned_cols=196 Identities=28% Similarity=0.463 Sum_probs=164.9
Q ss_pred EEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
|+++||+++|++.+ .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999997531 1279999999999999999999999999999999999999999999999999975 456788999
Q ss_pred EEEcccCccccc-CHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 579 GFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
+|++|++.+|.+ |++||+.+... ...+ ++++.++++..++.+...+.+ ..||||||||++|||||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral 151 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV---------GGFSTGMRQKVAIARAL 151 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh---------hhcCHHHHHHHHHHHHH
Confidence 999999999985 99999986421 0112 344555666666655444322 46999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+++|++|+|||||++||+++.+.+.+.|+++.++ ++|+|+|||+++.+..-+|
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~---~~tii~~tH~~~~~~~~~d 204 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL---GKCILFSTHIMQEVERLCD 204 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhcC
Confidence 9999999999999999999999999999988542 5899999999998776555
No 83
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=4.8e-43 Score=334.13 Aligned_cols=191 Identities=34% Similarity=0.538 Sum_probs=172.3
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|.+++|.|+|... + -.++++|++||++||+||||||||||++|+.||..|++|+|.|||+|.....+. ++-++
T Consensus 2 l~L~~V~~~y~~~--~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHL--P---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcc--e---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 5688999999743 2 468999999999999999999999999999999999999999999999876654 67899
Q ss_pred EEcccCccc-ccCHHHHhccCCCC-----CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 580 FVGQEPKLF-RMDISSNISYGCTQ-----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 580 ~V~Qd~~LF-~gTI~eNI~~g~~~-----~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
+++||.-|| .-||++||.+|-.+ ..+.+++..++..+|+.++..++|.. ||||||||+||||+|+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~---------LSGGqRQRvALARclv 145 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGE---------LSGGQRQRVALARCLV 145 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccc---------cCchHHHHHHHHHHHh
Confidence 999999999 57999999999643 24678999999999999999999955 8999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+-|||+||||.|+||+.-.+.+.+.+.++..+ ++.|+++|||.++.++...|
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E--~~~TllmVTH~~~Da~~ia~ 198 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDE--RKMTLLMVTHHPEDAARIAD 198 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHHhhh
Confidence 999999999999999999999999999888765 47999999999998887654
No 84
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-42 Score=367.32 Aligned_cols=198 Identities=36% Similarity=0.533 Sum_probs=171.6
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+++|++....++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743224699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcccC--cccccCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005203 579 GFVGQEP--KLFRMDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (709)
Q Consensus 579 ~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (709)
|||+|++ .++..|++|||.++.. ...+ ++++.++++..++.++..+.| .+||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qrv~lAra 154 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP---------ARLSGGQKQRVAIAGA 154 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 4678899999998632 0122 356777888888877766655 4699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+++|++|||||||++||+.+.+.+.+.|+++.++ .|+|+|+|||+++.+. .+|
T Consensus 155 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tilivtH~~~~~~-~~d 208 (279)
T PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD--YQMTVISITHDLDEVA-LSD 208 (279)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHH-hCC
Confidence 99999999999999999999999999999988642 2589999999999874 355
No 85
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-43 Score=354.43 Aligned_cols=193 Identities=33% Similarity=0.541 Sum_probs=163.0
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ .+++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 478999999974 46999999999999999999999999999999999999999999999999997654 3578899
Q ss_pred EEcccCcccc-cCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 580 FVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.+++.+.| ..||||||||++|||||+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP---------HELSGGQQQRVALARALA 146 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999986 699999987521 0111 234556666666655544433 469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++|||||||++||+++.+.+.+.|+++.+. .++|+|+|||+++.+..-+|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d 199 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRE--LGITTIYVTHDQEEALALAD 199 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEecCHHHHHHhcC
Confidence 999999999999999999999999999887531 25899999999998877666
No 86
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-43 Score=356.65 Aligned_cols=197 Identities=33% Similarity=0.560 Sum_probs=176.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC-CCCHHHHhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK-EVDIKWLRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~-~~~~~~lR~~ 577 (709)
-|+++|++|+|+++ .++|+|+|++|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48899999999865 68999999999999999999999999999999999999999999999999998 4789999999
Q ss_pred eEEEcccC--cccccCHHHHhccCCCC-CCCH----HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 578 IGFVGQEP--KLFRMDISSNISYGCTQ-DIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 578 I~~V~Qd~--~LF~gTI~eNI~~g~~~-~~~~----e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
+|+|+|+| ++|..||.|.++||... ..+. +++.++++.++++++-.+-| .+||||||||+|||-
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p---------~~LSGGqkqRvaIA~ 151 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP---------FNLSGGQKQRVAIAG 151 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc---------cccCCcceeeHHhhH
Confidence 99999999 89999999999999531 2333 45677888888888755555 359999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|..+|++||||||||+||++..+.+.+.++++.++ .++|+|+|||+++.+...+|
T Consensus 152 vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~--~~~tii~~tHd~~~~~~~ad 207 (235)
T COG1122 152 VLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE--GGKTIIIVTHDLELVLEYAD 207 (235)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHhhCC
Confidence 999999999999999999999999999999999754 35899999999999888766
No 87
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.5e-42 Score=353.99 Aligned_cols=197 Identities=30% Similarity=0.462 Sum_probs=161.8
Q ss_pred EEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHH---Hh
Q 005203 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW---LR 575 (709)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~---lR 575 (709)
|+++||+++|++.+ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999997421 246999999999999999999999999999999999999999999999999998876543 34
Q ss_pred -cceEEEcccCcccc-cCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 576 -GRIGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 576 -~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
+.|+||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.+...+.| ..||||||||++|
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 152 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP---------SELSGGERQRVAI 152 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHH
Confidence 68999999999995 699999987411 0111 234455555555544433322 4699999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+++|++||||||||+||+++...+.+.|+++.++ .++|+|+|||+++.+.. +|
T Consensus 153 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~tH~~~~~~~-~d 209 (221)
T TIGR02211 153 ARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE--LNTSFLVVTHDLELAKK-LD 209 (221)
T ss_pred HHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHhh-cC
Confidence 99999999999999999999999999999999887532 25899999999998765 45
No 88
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-42 Score=364.94 Aligned_cols=196 Identities=30% Similarity=0.511 Sum_probs=172.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.|
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999742 4699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcccC--cccccCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005203 579 GFVGQEP--KLFRMDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (709)
Q Consensus 579 ~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (709)
|||+|++ .+|..|+.|||.++.. ...+ ++++.++++..++.++..+.|. .||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~LSgG~~qrv~lara 152 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY---------HLSYGQKKRVAIAGV 152 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChh---------hCCHHHHHHHHHHHH
Confidence 9999998 6899999999998621 0122 3556777888888777666553 599999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+++|++|+|||||++||+.+...+.+.|+++.+. ++|+|+|||+++.+..-+|
T Consensus 153 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~---g~tili~tH~~~~~~~~~d 206 (274)
T PRK13647 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ---GKTVIVATHDVDLAAEWAD 206 (274)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999988642 5899999999998866555
No 89
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-42 Score=356.22 Aligned_cols=197 Identities=30% Similarity=0.416 Sum_probs=162.2
Q ss_pred cEEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHH---H
Q 005203 499 RIDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW---L 574 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~---l 574 (709)
-++++||+|+|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997532 147999999999999999999999999999999999999999999999999998887643 3
Q ss_pred h-cceEEEcccCccccc-CHHHHhccCCC-CCC----CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005203 575 R-GRIGFVGQEPKLFRM-DISSNISYGCT-QDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (709)
Q Consensus 575 R-~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (709)
| +.|+||+|++.+|.+ |++||+.++.. ... .++++.++++..++.+...+.| .+||||||||++
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgG~~qrl~ 155 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP---------SELSGGERQRVA 155 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHH
Confidence 3 679999999999975 99999987310 011 1234555555555544333222 479999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhh
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALS 706 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~ 706 (709)
|||||+.+|++|||||||++||+++...+.+.|+++.+. .|+|+|+|||+++.+...
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tvii~sH~~~~~~~~ 212 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL--QGTAFLVVTHDLQLAKRM 212 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 999999999999999999999999999999999887531 258999999999987653
No 90
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-42 Score=357.70 Aligned_cols=196 Identities=34% Similarity=0.508 Sum_probs=163.9
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC---HHHHhc
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD---IKWLRG 576 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~---~~~lR~ 576 (709)
|+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4789999999741 46999999999999999999999999999999999999999999999999998776 467889
Q ss_pred ceEEEcccCcccc-cCHHHHhccCCCC-------------CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHH
Q 005203 577 RIGFVGQEPKLFR-MDISSNISYGCTQ-------------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQ 642 (709)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~-------------~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQ 642 (709)
.++||+|++.+|. .|++||+.++... ...++++.++++..++.+...+.| ..|||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~ 149 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA---------DQLSGGQ 149 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc---------ccCCHHH
Confidence 9999999999887 7999999874210 112334555555555544332211 4799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 643 kQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||++|||||+++|++||||||||+||+.+...+.+.|+++.+. .++|+|+|||+++.+..-+|
T Consensus 150 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~tH~~~~~~~~~d 213 (241)
T cd03256 150 QQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINRE--EGITVIVSLHQVDLAREYAD 213 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999999999987531 25899999999998876666
No 91
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.5e-42 Score=352.80 Aligned_cols=195 Identities=29% Similarity=0.430 Sum_probs=165.9
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH---HHhc
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK---WLRG 576 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~---~lR~ 576 (709)
|+++||+++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 7899999999532 5799999999999999999999999999999999999999999999999999877644 3788
Q ss_pred ceEEEcccCcc-cccCHHHHhccCCC-CCCCH----HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 577 RIGFVGQEPKL-FRMDISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 577 ~I~~V~Qd~~L-F~gTI~eNI~~g~~-~~~~~----e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
.++||+|++.+ +..|++|||.++.. ...++ +++.++++..++.++..+.| ..||||||||++|||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar 150 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP---------IQLSGGEQQRVGIAR 150 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------hhCCHHHHHHHHHHH
Confidence 99999999987 57899999987521 12222 24556666666666554433 469999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+++|++|||||||++||+++.+.+.+.|+++.++ +.|+|+|||+++.+...+|
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~---~~tiii~sH~~~~~~~~~d 205 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV---GVTVLMATHDIGLISRRSY 205 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999987542 5899999999999887666
No 92
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1e-42 Score=353.26 Aligned_cols=188 Identities=34% Similarity=0.571 Sum_probs=161.9
Q ss_pred EEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEE
Q 005203 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (709)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~ 580 (709)
+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+|+.|+|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 46899999974 46999999999999999999999999999999999999999999999998864 57889999
Q ss_pred EcccCcc---cccCHHHHhccCCCC---------CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 581 VGQEPKL---FRMDISSNISYGCTQ---------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 581 V~Qd~~L---F~gTI~eNI~~g~~~---------~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
|+|++.+ |+.|++|||.++... ...++++.++++..++.++..+.| .+||||||||++|
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l 143 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI---------GELSGGQQQRVLL 143 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc---------ccCCHHHHHHHHH
Confidence 9999987 678999999875321 112356677777777776655433 3699999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+++|++|||||||++||+++.+.+.+.|+++.+. ++|+|+|||+++.+..-+|
T Consensus 144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~---~~tvi~~sH~~~~~~~~~d 200 (213)
T cd03235 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE---GMTILVVTHDLGLVLEYFD 200 (213)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcC
Confidence 99999999999999999999999999999999987632 5899999999998876665
No 93
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.9e-42 Score=350.00 Aligned_cols=192 Identities=27% Similarity=0.408 Sum_probs=168.1
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++... ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 4799999999999999999999999999999999999999999999999998764 56788999
Q ss_pred EEcccCccc-ccCHHHHhccCCC-CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCC
Q 005203 580 FVGQEPKLF-RMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657 (709)
Q Consensus 580 ~V~Qd~~LF-~gTI~eNI~~g~~-~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ 657 (709)
||+|++.+| +.|++||+.++.. ...+++++.++++..++.+...+.| ..||||||||++||||++++|+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKV---------KGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999999888 5899999987531 1235678888888888877655432 3699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 658 ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|+|||||++||+++.+.+.+.|+++.+. ++|+|+|||+++.+...+|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~---~~tii~~tH~~~~~~~~~d 194 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQ---GITVLISSHLLSEIQKVAD 194 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHC---CCEEEEEcCCHHHHHHhcC
Confidence 99999999999999999999999887642 5899999999998876555
No 94
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.8e-42 Score=356.94 Aligned_cols=196 Identities=32% Similarity=0.485 Sum_probs=163.7
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH---HHHhc
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI---KWLRG 576 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~---~~lR~ 576 (709)
|+++||+++|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999972 2569999999999999999999999999999999999999999999999999987654 45788
Q ss_pred ceEEEcccCcccc-cCHHHHhccCCCC-------------CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHH
Q 005203 577 RIGFVGQEPKLFR-MDISSNISYGCTQ-------------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQ 642 (709)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~-------------~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQ 642 (709)
.++||+|++.+|. .|++||+.++... ...++++.++++..++.+++.+.| ..|||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~ 150 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---------DQLSGGQ 150 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHH
Confidence 9999999999986 6999999875210 112334555555555554433321 4799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 643 kQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||++|||||+++|++||||||||+||+++.+.+.+.|+++.++ .++|+|+|||+++.+..-+|
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~tH~~~~~~~~~d 214 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE--DGITVIINLHQVDLAKKYAD 214 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcC
Confidence 99999999999999999999999999999999999999887531 25899999999998876666
No 95
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.8e-42 Score=353.00 Aligned_cols=194 Identities=25% Similarity=0.459 Sum_probs=162.7
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++. ..++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++... ...+++.++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5789999999753 25799999999999999999999999999999999999999999999999998764 367788999
Q ss_pred EEcccCccc-ccCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 580 FVGQEPKLF-RMDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 580 ~V~Qd~~LF-~gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
||+|++.+| ..|++||+.++.. ...+ ++++.++++..++.+.... .+ ..||||||||++|||||+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~--~~LS~G~~qrv~la~al~ 149 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK-------RA--RTLSGGMKRKLSLAIALI 149 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhC-------hh--hhCCHHHHHHHHHHHHHh
Confidence 999999999 6899999987421 0112 2345555555555443322 11 469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+...+|
T Consensus 150 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~~d 200 (220)
T cd03263 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEVRK----GRSIILTTHSMDEAEALCD 200 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEcCCHHHHHHhcC
Confidence 99999999999999999999999999998864 3899999999998876555
No 96
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.5e-42 Score=346.00 Aligned_cols=187 Identities=36% Similarity=0.569 Sum_probs=164.6
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
+.|+++|++++|++. ..++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999753 2479999999999999999999999999999999999999999999999999988888889999
Q ss_pred eEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCC
Q 005203 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657 (709)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ 657 (709)
|+||+|++.+|++|++|||.+++ ..+++++.++++ ++. ....|||||+||++|||||+++|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~--------------~~~--~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR--------------VSE--GGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh--------------ccC--CCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998873 345555555443 111 115799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 658 ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. +|
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tiii~th~~~~~~~-~d 191 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEFT----NSTILTIAHRLRTIID-YD 191 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcC----CCEEEEEeCCHHHHhh-CC
Confidence 9999999999999999999999988743 5899999999998764 55
No 97
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.8e-42 Score=349.80 Aligned_cols=194 Identities=33% Similarity=0.504 Sum_probs=162.5
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC--CCHHHHhcc
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE--VDIKWLRGR 577 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~--~~~~~lR~~ 577 (709)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999974 469999999999999999999999999999999999999999999999999853 455678899
Q ss_pred eEEEcccCcccc-cCHHHHhccCCC--CCCCH----HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 578 IGFVGQEPKLFR-MDISSNISYGCT--QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~~----e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
|+||+|++.+|. .|++||+.++.. ...+. +++.++++..++.+.+.+.| ..||||||||++|||
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~ 148 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP---------AQLSGGQQQRVAIAR 148 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc---------cccCHHHHHHHHHHH
Confidence 999999999996 699999987521 12222 23444444444444433332 479999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+++|++|||||||++||+++.+.+.+.|+++.+. ++|+|++||+++.+..-+|
T Consensus 149 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~---~~tvi~~sh~~~~~~~~~d 203 (213)
T cd03262 149 ALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE---GMTMVVVTHEMGFAREVAD 203 (213)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999988642 5899999999998876555
No 98
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=3.1e-42 Score=355.08 Aligned_cols=200 Identities=30% Similarity=0.481 Sum_probs=163.3
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHH-hcce
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL-RGRI 578 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~l-R~~I 578 (709)
|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999973 469999999999999999999999999999999999999999999999999988776554 5779
Q ss_pred EEEcccCccccc-CHHHHhccCCCCCCCHHHH-------HHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHH
Q 005203 579 GFVGQEPKLFRM-DISSNISYGCTQDIKQQDI-------EWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAI 648 (709)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i-------~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaL 648 (709)
+||+|++.+|.+ |++|||.++.. ......+ ........+++.++.+ |++...+. ..||||||||++|
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 154 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQ-ARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHh-hccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHH
Confidence 999999999987 99999988632 1100000 0001112234455544 45544444 4899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+++|++|||||||++||+++.+.+.+.|+++.+. ++|+|+|||+++.+..-+|
T Consensus 155 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~---~~tii~vsH~~~~~~~~~d 211 (236)
T cd03219 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER---GITVLLVEHDMDVVMSLAD 211 (236)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC---CCEEEEEecCHHHHHHhCC
Confidence 99999999999999999999999999999999887632 5899999999998876665
No 99
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-42 Score=357.22 Aligned_cols=198 Identities=28% Similarity=0.428 Sum_probs=169.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCcceEEECCEeCCCCCHHHHh
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE---PTNGQILIDGFPIKEVDIKWLR 575 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~---p~~G~I~idG~di~~~~~~~lR 575 (709)
.|+++||+++|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++ |++|+|.+||+|+.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999973 479999999999999999999999999999999999985 7999999999999988888899
Q ss_pred cceEEEcccCcccccCHHHHhccCCC-------CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 576 GRIGFVGQEPKLFRMDISSNISYGCT-------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 576 ~~I~~V~Qd~~LF~gTI~eNI~~g~~-------~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
+.|+|++|++.+|..|++||+.++.. .+..++++.++++..++++++..+.+ . ...+||||||||++|
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~--~~~~LS~G~~qrv~l 153 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLK---Q--NALALSGGQQQRLCI 153 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhc---C--CcccCCHHHHHHHHH
Confidence 99999999999999999999987621 01223456777787777665543211 1 115799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+++|++|+|||||++||+++...+.+.|+++.+ ++|+|+|||+++.+..-+|
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~----~~tiii~tH~~~~~~~~~d 209 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH----NLSMIMVTHNMQQGKRVAD 209 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC----CCEEEEEecCHHHHHhhCc
Confidence 9999999999999999999999999999999988753 4899999999998876555
No 100
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-42 Score=351.79 Aligned_cols=194 Identities=34% Similarity=0.524 Sum_probs=163.8
Q ss_pred EEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999997421 1479999999999999999999999999999999999999999999999999863 46789
Q ss_pred EEEcccCcccc-cCHHHHhccCCC-CCC----CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 579 GFVGQEPKLFR-MDISSNISYGCT-QDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
+||+|++.+|. .|++||+.++.. ... .++++.++++..++.++..+.| ..||||||||++|||||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al 146 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP---------HQLSGGMRQRVALARAL 146 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------ccCCHHHHHHHHHHHHH
Confidence 99999999997 799999987521 011 2345666777777766655544 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcCC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFDC 709 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~~ 709 (709)
+++|++|||||||++||+++...+.+.|+++.++ .++|+|+|||+++.+..-+|+
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~ 201 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWRE--TGKTVLLVTHDIDEAVFLADR 201 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEecCHHHHHHhCCE
Confidence 9999999999999999999999999999887431 258999999999988776663
No 101
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-42 Score=348.85 Aligned_cols=191 Identities=28% Similarity=0.465 Sum_probs=164.5
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+|+|++ .++++|+||+|++| ++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999974 46999999999999 99999999999999999999999999999999999998766 77899999
Q ss_pred EEcccCccccc-CHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 580 FVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
||+|++.+|.+ |++||+.+... ...+ ++++.++++..++.++.+..| ..||||||||++|||||+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~ 146 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI---------GSLSGGMRRRVGIAQALV 146 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch---------hhCCHHHHHHHHHHHHHh
Confidence 99999999986 99999986310 0111 345667777777766543322 469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++|+|||||++||+++.+.+.+.|+++.+ +.|+|+|||+++.+..-+|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~vsH~~~~~~~~~d 197 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGE----DRIVILSTHIVEDVESLCN 197 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC----CCEEEEEcCCHHHHHHhCC
Confidence 99999999999999999999999999998864 3899999999998876555
No 102
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-42 Score=372.96 Aligned_cols=198 Identities=30% Similarity=0.450 Sum_probs=165.6
Q ss_pred EEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHH---Hh
Q 005203 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW---LR 575 (709)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~---lR 575 (709)
|+++||+|+|++.. +.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 257999999999999999999999999999999999999999999999999998877544 58
Q ss_pred cceEEEcccCcccc-cCHHHHhccCCC-CCCCH----HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005203 576 GRIGFVGQEPKLFR-MDISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (709)
Q Consensus 576 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~~----e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (709)
++||||+|++.+|. .|++|||.++.. ...+. +++.++++..++.++..+.| ..||||||||++||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qRv~lA 152 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP---------AQLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHH
Confidence 89999999999996 799999987521 01222 34455555555544443322 46999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 650 RAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 650 RALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||+++|++|+||||||+||+++.+.+.+.|+++.++ .++|+|+|||+++.+..-||
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tiilvtH~~~~i~~~~d 209 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRE--LGLTIVLITHEMDVVKRICD 209 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999987542 25899999999998877666
No 103
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=7.3e-42 Score=348.94 Aligned_cols=198 Identities=26% Similarity=0.430 Sum_probs=160.1
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHH-hcce
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL-RGRI 578 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~l-R~~I 578 (709)
|+++||+++|++ .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.... |+.|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999974 469999999999999999999999999999999999999999999999999988776654 6789
Q ss_pred EEEcccCccccc-CHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCC
Q 005203 579 GFVGQEPKLFRM-DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657 (709)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ 657 (709)
+||+|++.+|.+ |++||+.++.. ....++..+. ...+.+....++..+++.+ ..||||||||++|||||+++|+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~--~~~~l~~~~~l~~~~~~~~--~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAY-ARRRAKRKAR--LERVYELFPRLKERRKQLA--GTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhh-hcCchhHHHH--HHHHHHHHHhhhhhhhCch--hhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999986 99999998743 2111111111 1112222212222223222 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 658 ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|+|||||++||+++...+.+.|+++.+. ++|+|++||+++.+..-+|
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~---~~tiii~sH~~~~~~~~~d 200 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDE---GVTILLVEQNARFALEIAD 200 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhcc
Confidence 99999999999999999999999987642 5899999999998776665
No 104
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=4.6e-42 Score=348.32 Aligned_cols=193 Identities=29% Similarity=0.520 Sum_probs=162.9
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. ++.++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999974 4699999999999999999999999999999999999999999999999999765543 57899
Q ss_pred EEcccCcccc-cCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 580 FVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.+++.+.| ..||||||||++|||||+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~laral~ 146 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP---------KQLSGGQRQRVALGRAIV 146 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999995 699999987521 0112 234556666666666555443 469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++|+|||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.+..-+|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~~sH~~~~~~~~~d 199 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR--LGTTTIYVTHDQVEAMTMAD 199 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcC
Confidence 999999999999999999999999999887532 25899999999998776555
No 105
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-41 Score=352.83 Aligned_cols=196 Identities=36% Similarity=0.571 Sum_probs=166.9
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999973 4699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcccCcccccCHHHHhccCCC-CCCCHHHHHHHHHHHhhH-HHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCC
Q 005203 579 GFVGQEPKLFRMDISSNISYGCT-QDIKQQDIEWAAKQAYAH-DFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (709)
Q Consensus 579 ~~V~Qd~~LF~gTI~eNI~~g~~-~~~~~e~i~~aa~~a~l~-d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p 656 (709)
+|++|++.+|+.|++||+.++.. ....++++.+.++..++. +...+- -..||||||||++|||||+++|
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRD---------VKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCC---------cccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999997632 112234555555555553 222211 1479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 657 TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|||||||++||+++.+.+.+.|+++.+. .++|+|+|||+++.+..-+|
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tii~~sH~~~~~~~~~d 200 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNK--MNLTVIWITHNMEQAKRIGD 200 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeccHHHHHHhCC
Confidence 999999999999999999999999987541 25899999999998776665
No 106
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-42 Score=354.16 Aligned_cols=194 Identities=32% Similarity=0.496 Sum_probs=161.9
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++...+. .++.|
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 3789999999974 469999999999999999999999999999999999999999999999999876553 36789
Q ss_pred EEEcccCcccc-cCHHHHhccCCCC-CC----C----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 579 GFVGQEPKLFR-MDISSNISYGCTQ-DI----K----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~~-~~----~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
+||+|++.+|. .|++||+.++... .. + ++++.++++..++.+...+.| ..||||||||++|
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~l 147 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP---------AQLSGGQRQRVAL 147 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence 99999999995 6999999876320 11 1 233445555555544443332 3699999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+++|++|||||||++||+++.+.+.+.|+++.+. .++|+|+|||+++.+..-+|
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sH~~~~~~~~~d 205 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE--LHVTTVFVTHDQEEALEVAD 205 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999887531 25899999999998776565
No 107
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-42 Score=363.34 Aligned_cols=197 Identities=28% Similarity=0.465 Sum_probs=163.3
Q ss_pred EEEEEEEEEcCCCC--CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC----CCHHH
Q 005203 500 IDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE----VDIKW 573 (709)
Q Consensus 500 I~~~nVsF~Y~~~~--~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~----~~~~~ 573 (709)
|+++||+|+|++.. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997431 1369999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEcccC--cccccCHHHHhccCCCC-CCCHH----HHHHHHHHHhhH-HHHHcCCCCcccccCCCCCChHHHHH
Q 005203 574 LRGRIGFVGQEP--KLFRMDISSNISYGCTQ-DIKQQ----DIEWAAKQAYAH-DFIMSLPSGYETLVDDDLLSGGQKQR 645 (709)
Q Consensus 574 lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~~-~~~~e----~i~~aa~~a~l~-d~I~~LP~GydT~vGe~~LSGGQkQR 645 (709)
+|+.||||+|+| .+|..|+.|||.|+... ..+.+ ++.++++..++. ++..+.| ..||||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~~LSgGqkqr 152 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSP---------FELSGGQMRR 152 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCc---------ccCCHHHHHH
Confidence 899999999998 89999999999987320 12333 334444444542 2222111 4799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+. ++|+|+|||+++.+...+|
T Consensus 153 vaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~---g~til~vtHd~~~~~~~~d 212 (288)
T PRK13643 153 VAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS---GQTVVLVTHLMDDVADYAD 212 (288)
T ss_pred HHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC---CCEEEEEecCHHHHHHhCC
Confidence 99999999999999999999999999999999999988642 6899999999998876666
No 108
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-42 Score=372.67 Aligned_cols=195 Identities=28% Similarity=0.478 Sum_probs=170.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+++|+++ .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+++.. ++.|
T Consensus 3 ~l~i~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 48999999999532 5799999999999999999999999999999999999999999999999999887654 5789
Q ss_pred EEEcccCcccc-cCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 579 GFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
|||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++..+.|. .||||||||++|||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---------~LSgGq~QRvalARAL 149 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR---------ELSGGQRQRVAMGRAI 149 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh---------hCCHHHHHHHHHHHHH
Confidence 99999999995 699999998732 0112 3567788888898888777663 5999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+++|++|+||||||+||+.+...+.+.|+++.++ .+.|+|+|||+++.+..-+|
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~l~D 203 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR--LKTTSLYVTHDQVEAMTLAD 203 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999887642 25899999999988766555
No 109
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.1e-41 Score=342.89 Aligned_cols=192 Identities=22% Similarity=0.364 Sum_probs=167.5
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ..+|+.++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 478999999974 46999999999999999999999999999999999999999999999999987543 57889999
Q ss_pred EEcccCccc-ccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCE
Q 005203 580 FVGQEPKLF-RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTI 658 (709)
Q Consensus 580 ~V~Qd~~LF-~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~I 658 (709)
|++|++.++ +.|++||+.++.+ ..+++++.++++..++.++..+.+ ..||||||||++|||||+++|++
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGFEDRPV---------AQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcc-cccHHHHHHHHHHcCChhhhcCch---------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 6899999998754 446778888888888875533221 46999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 659 LILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 659 LILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||||++||+++.+.+.+.|+++.++ ++|+|+|||++..+...+|
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~---g~tiii~sH~~~~~~~~~~ 193 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCAR---GGMVVLTTHQDLGLSEAGA 193 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEecCchhhhhccc
Confidence 9999999999999999999999887543 6899999999887766443
No 110
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-42 Score=362.37 Aligned_cols=198 Identities=33% Similarity=0.541 Sum_probs=164.0
Q ss_pred EEEEEEEEEcCCCC--CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC--HHHHh
Q 005203 500 IDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD--IKWLR 575 (709)
Q Consensus 500 I~~~nVsF~Y~~~~--~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~--~~~lR 575 (709)
|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 146999999999999999999999999999999999999999999999999998753 45788
Q ss_pred cceEEEcccC--cccccCHHHHhccCCC-CCCCHH----HHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHH
Q 005203 576 GRIGFVGQEP--KLFRMDISSNISYGCT-QDIKQQ----DIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRI 646 (709)
Q Consensus 576 ~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~e----~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRI 646 (709)
++||||+|++ .+|+.|++|||.++.. ...+.+ ++.++++..++. +++.... ..||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 6889999999998621 123333 344444444443 1122222 47999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 647 aLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.++ .++|+|+|||+++.+..-+|
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~d 213 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE--YNMTIILVSHSMEDVAKLAD 213 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999999988642 25899999999998876565
No 111
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.4e-41 Score=348.49 Aligned_cols=198 Identities=28% Similarity=0.416 Sum_probs=166.8
Q ss_pred cEEEEEEEEEcCCCCC-CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHH---H
Q 005203 499 RIDFVDVSFRYSSREM-VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW---L 574 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~-~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~---l 574 (709)
-|+++||+++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999975321 35999999999999999999999999999999999999999999999999998877543 3
Q ss_pred -hcceEEEcccCccccc-CHHHHhccCC-----CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005203 575 -RGRIGFVGQEPKLFRM-DISSNISYGC-----TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (709)
Q Consensus 575 -R~~I~~V~Qd~~LF~g-TI~eNI~~g~-----~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (709)
++.++||+|++.+|.+ |+.|||.++. ++...++++.++++..++.++..+.| ..||||||||++
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Ge~qrl~ 156 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP---------AQLSGGEQQRVA 156 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh---------hhCCHHHHHHHH
Confidence 3679999999999985 9999998631 10112456677777777776666554 359999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||+++|++|||||||++||+++...+.+.|+++.++ .+.|+|+|||+++.+.. +|
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~-~d 214 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE--HGTTLILVTHDLQLAAR-CD 214 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHh-CC
Confidence 999999999999999999999999999999999887532 25899999999998754 55
No 112
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-41 Score=359.88 Aligned_cols=197 Identities=37% Similarity=0.535 Sum_probs=172.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999743 25799999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcccC--cccccCHHHHhccCCCC-CCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005203 579 GFVGQEP--KLFRMDISSNISYGCTQ-DIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (709)
Q Consensus 579 ~~V~Qd~--~LF~gTI~eNI~~g~~~-~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (709)
|||+|++ .+++.|+.|||.++... ..+ ++++.++++..++++++...|. .||||||||++||||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---------~LS~G~~qrv~lara 154 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH---------RLSGGQKQRVAIAGV 154 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcc---------cCCHHHHHHHHHHHH
Confidence 9999998 57788999999875210 122 3457778888888888777663 699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+.+|++|||||||++||+.+...+.+.|+++.+. .++|+|+|||+++.+.. +|
T Consensus 155 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~--~~~tilivsH~~~~~~~-~d 208 (279)
T PRK13635 155 LALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ--KGITVLSITHDLDEAAQ-AD 208 (279)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CC
Confidence 99999999999999999999999999999988642 25899999999998864 65
No 113
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-42 Score=350.99 Aligned_cols=198 Identities=33% Similarity=0.476 Sum_probs=165.5
Q ss_pred EEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH---HHh
Q 005203 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK---WLR 575 (709)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~---~lR 575 (709)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997431 12799999999999999999999999999999999999999999999999999876643 458
Q ss_pred cceEEEcccCcccc-cCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005203 576 GRIGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (709)
Q Consensus 576 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (709)
+.|+||+|++.+|. .|++|||.++.. ...+ .+++.++++..++.+.+.+.| ..||||||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la 152 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP---------AQLSGGQKQRVGIA 152 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh---------hhCCHHHHHHHHHH
Confidence 89999999999997 699999987521 0111 334555666666655544433 46999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 650 RAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 650 RALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||+++|++|||||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.+..-+|
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sH~~~~~~~~~d 209 (233)
T cd03258 153 RALANNPKVLLCDEATSALDPETTQSILALLRDINRE--LGLTIVLITHEMEVVKRICD 209 (233)
T ss_pred HHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999887532 25899999999998877666
No 114
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.7e-41 Score=333.65 Aligned_cols=163 Identities=45% Similarity=0.708 Sum_probs=152.2
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++|++++|++. ..++++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999853 256999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEE
Q 005203 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTIL 659 (709)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~IL 659 (709)
||+|++.+|++|++||+ ||||||||++|||||+++|++|
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 660 ILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 660 ILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||||++||+.+.+.+.+.|+++.+. ++|+|++||+++.+. -+|
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~---~~tii~~sh~~~~~~-~~d 163 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAA---GATRIVIAHRPETLA-SAD 163 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhC---CCEEEEEeCCHHHHH-hCC
Confidence 999999999999999999999988642 689999999999875 355
No 115
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-42 Score=355.43 Aligned_cols=196 Identities=32% Similarity=0.541 Sum_probs=167.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--CCH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--VDI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-----p~~G~I~idG~di~~--~~~ 571 (709)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5899999999973 469999999999999999999999999999999999975 689999999999865 345
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCC-CC-----CCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QD-----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (709)
..+|+.|+||+|++.+|.+|++||+.++.. .. ..++++.++++..++++++.. ..+. .+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 678899999999999999999999987521 01 124566777777777654432 2222 47999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+..-+|
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tvii~tH~~~~~~~~~d 216 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA----RYTIIIVTHNMQQAARVSD 216 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCeEEEEEecHHHHHHhCC
Confidence 999999999999999999999999999999999999998854 4899999999998877666
No 116
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-41 Score=353.94 Aligned_cols=190 Identities=31% Similarity=0.445 Sum_probs=165.4
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+|+.+
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999974 46999999999999999999999999999999999999999999999998763 567899
Q ss_pred EEEcccCcccc-cCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCC
Q 005203 579 GFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657 (709)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ 657 (709)
+||+|++.+|. .|++||+.++.. ...++++.++++..++.++..+.| ..||||||||++|||||+++|+
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK-GQWRDAALQALAAVGLADRANEWP---------AALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc-chHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999997 699999998632 223567777888877766544433 4699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 658 ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||||++||+++...+.+.|+++.++ .++|+|+|||+++.+..-+|
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~~~tviivsHd~~~~~~~~d 202 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQ--HGFTVLLVTHDVSEAVAMAD 202 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999887432 25899999999998876666
No 117
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-41 Score=361.08 Aligned_cols=200 Identities=32% Similarity=0.545 Sum_probs=164.8
Q ss_pred EEEEEEEEEcCCCC--CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC----CHHH
Q 005203 500 IDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV----DIKW 573 (709)
Q Consensus 500 I~~~nVsF~Y~~~~--~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~----~~~~ 573 (709)
|+++||+|+|++.. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 14699999999999999999999999999999999999999999999999998653 3467
Q ss_pred HhcceEEEcccC--cccccCHHHHhccCCC-CCCCHHHHHHHHHHHhhHHHHHcCCCCccccc-CC--CCCChHHHHHHH
Q 005203 574 LRGRIGFVGQEP--KLFRMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLV-DD--DLLSGGQKQRIA 647 (709)
Q Consensus 574 lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~v-Ge--~~LSGGQkQRIa 647 (709)
+|+.||||+|++ .+|..|+.|||.++.. ...+.++..+. +++.+..+ |+++.. .. ..||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 899999999997 6899999999998632 12344333322 23334432 565432 22 489999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||+.+|++|||||||++||+.+...+.+.|+++.+. .|+|+|+|||+++.+...+|
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvl~vtH~~~~~~~~~d 214 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD--ENKTIILVSHDMNEVARYAD 214 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCC
Confidence 999999999999999999999999999999999987532 25899999999998876666
No 118
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.3e-41 Score=353.15 Aligned_cols=197 Identities=34% Similarity=0.509 Sum_probs=165.3
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----cceEEECCEeCCCC--CHH
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-----NGQILIDGFPIKEV--DIK 572 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~-----~G~I~idG~di~~~--~~~ 572 (709)
|+++||+++|++ .++++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999974 36999999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHhcceEEEcccCcccccCHHHHhccCCC-CC-C----CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005203 573 WLRGRIGFVGQEPKLFRMDISSNISYGCT-QD-I----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (709)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-~----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (709)
.+|+.|+||+|++.+|..|+.||+.++.. .. . .++++.++++..++.+++... .+.. -..||||||||+
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LSgG~~qrv 153 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDR---LHDS--ALGLSGGQQQRL 153 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhH---hhCC--cccCCHHHHHHH
Confidence 77899999999999999999999987521 01 1 124556667777765333110 1111 147999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 647 aLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||+++|++|||||||++||+++...+.+.|+++.++ +|+|+|||+++.+..-+|
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~----~tiiivsH~~~~~~~~~d 211 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK----YTIVIVTHNMQQAARISD 211 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc----CeEEEEecCHHHHHHhCC
Confidence 9999999999999999999999999999999999988643 799999999998877666
No 119
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-41 Score=356.98 Aligned_cols=197 Identities=35% Similarity=0.578 Sum_probs=168.6
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++|++++|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.|
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999743 35799999999999999999999999999999999999999999999999999887778899999
Q ss_pred EEEcccC--cccccCHHHHhccCCC-CCCCHH----HHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005203 579 GFVGQEP--KLFRMDISSNISYGCT-QDIKQQ----DIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (709)
Q Consensus 579 ~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~e----~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (709)
+||+|++ .++..|++|||.++.. ...+.+ ++.++++..++.++..+.| ..||||||||++||||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~lara 156 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP---------QNLSGGQKQRVAIASV 156 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 4667899999987521 012222 3566677777777666544 4799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+++|++|+|||||++||+.+.+.+.+.|+++.++ .++|+|++||+++.+. .+|
T Consensus 157 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~-~~d 210 (271)
T PRK13632 157 LALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT--RKKTLISITHDMDEAI-LAD 210 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEEechhHHh-hCC
Confidence 99999999999999999999999999999987642 1489999999998875 354
No 120
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=354.81 Aligned_cols=198 Identities=31% Similarity=0.465 Sum_probs=166.6
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCC--CCH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKE--VDI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----~~G~I~idG~di~~--~~~ 571 (709)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.+||+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5899999999973 4699999999999999999999999999999999999997 48999999999853 345
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCCC-C-----CCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCTQ-D-----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~-----~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (709)
..+|+.|+||+|++.+|+.|++|||.++... . ..++++.++++..++.+.+ +..+++.. ..||||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~~--~~LSgG~~qr 158 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNTNA--LSLSGGQQQR 158 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhCCc--ccCCHHHHHH
Confidence 6788999999999999999999999976310 1 1134566666766664433 23344432 5799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|||||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+..-+|
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tvii~sH~~~~~~~~~d 217 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE----SYTIIIVTHNMQQAGRISD 217 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999999998853 4899999999998876555
No 121
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-41 Score=345.83 Aligned_cols=194 Identities=23% Similarity=0.372 Sum_probs=165.3
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ....+|+.++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEE
Confidence 578999999974 469999999999999999999999999999999999999999999999999875 3457788999
Q ss_pred EEcccCccccc-CHHHHhccCC----C-CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 580 FVGQEPKLFRM-DISSNISYGC----T-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~----~-~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
||+|++.+|.+ |++||+.++. . ....++++.++++..++.++..+.| ..||||||||++||||++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~la~al~ 147 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV---------KTYSGGMRRRLEIARSLV 147 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 99999999875 9999998641 1 0112346677777777776655433 369999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.+|++|+|||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.+...+|
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~~tH~~~~~~~~~d 200 (220)
T cd03265 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE--FGMTILLTTHYMEEAEQLCD 200 (220)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999887542 25899999999998776655
No 122
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.8e-41 Score=348.48 Aligned_cols=196 Identities=28% Similarity=0.490 Sum_probs=161.5
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHH-Hhcce
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGRI 578 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~-lR~~I 578 (709)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+... .|+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999973 46999999999999999999999999999999999999999999999999998777655 45789
Q ss_pred EEEcccCccccc-CHHHHhccCCC-CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcc
Q 005203 579 GFVGQEPKLFRM-DISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr 654 (709)
+|++|++.+|.+ |++||+.++.. ...+.++.. ..+++.+..+ |++..... ..||||||||++|||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999987 99999987532 111222111 1223344433 44433333 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 655 DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++|||||||++||+++.+.+.+.|+++.+. ++|+|++||+++.+..-+|
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~---~~tii~~sH~~~~~~~~~d 201 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR---GIGVLITDHNVRETLSITD 201 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999887642 5899999999988776665
No 123
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-41 Score=344.43 Aligned_cols=190 Identities=27% Similarity=0.492 Sum_probs=158.3
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++|++++|++ +++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999973 469999999999999999999999999999999999999999999999998753 5688999
Q ss_pred EEcccCccccc-CHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 580 FVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
|++|++.+|.+ |++||+.++.. ...+ ++++.++++..++.+.....| .+||||||||++|||||+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV---------EELSKGNQQKVQFIAAVI 144 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcH---------hhCCHHHHHHHHHHHHHh
Confidence 99999999975 99999987521 0111 233444555555444332211 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++|+|||||++||+++.+.+.+.|+++.++ ++|+|+|||+++.+...+|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~---~~tii~~sH~~~~~~~~~d 196 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELARA---GKTVILSTHQMELVEELCD 196 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC---CCEEEEECCCHHHHHHhhh
Confidence 999999999999999999999999999887642 5899999999998766555
No 124
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-41 Score=352.26 Aligned_cols=196 Identities=31% Similarity=0.500 Sum_probs=162.1
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
++++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999842 46999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcccCcccc-cCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHH
Q 005203 580 FVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARA 651 (709)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARA 651 (709)
||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.+ +..... .+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999995 799999987521 0112 123333333333321 012222 4799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+++|++|||||||++||+++.+.+.+.|+++.+. .++|+|+|||+++.+...+|
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tvii~sH~~~~~~~~~d 204 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE--LGKTIVFVTHDIDEAFRLAD 204 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEecCHHHHHHhCC
Confidence 99999999999999999999999999999987531 25899999999998776665
No 125
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-41 Score=342.37 Aligned_cols=191 Identities=31% Similarity=0.518 Sum_probs=165.3
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++|++++|++. . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5789999999742 2 39999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEcccCccccc-CHHHHhccCCCCC-----CCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 580 FVGQEPKLFRM-DISSNISYGCTQD-----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~~~-----~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
||+|++.+|.+ |++||+.++.... .+++++.++++..++.+...+.|. .||||||||++|||||+
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG---------ELSGGERQRVALARVLV 144 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcc---------cCCHHHHHHHHHHHHHh
Confidence 99999999975 9999998753211 235578888888888887777663 59999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++|||||||++||+++...+.+.|+++.++ .++|+|+|||+++.+..-+|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d 197 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE--TKMTVLMVTHQPEDAKRLAQ 197 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhhhC
Confidence 999999999999999999999999999987532 25899999999998876555
No 126
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-41 Score=369.38 Aligned_cols=194 Identities=30% Similarity=0.487 Sum_probs=168.0
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5899999999973 469999999999999999999999999999999999999999999999999987664 46889
Q ss_pred EEEcccCcccc-cCHHHHhccCCC-CCC----CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 579 GFVGQEPKLFR-MDISSNISYGCT-QDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
|||+|++.||. .|++|||+|+.. ... .++++.++++..++.++..+.| ..||||||||++|||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~---------~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV---------DQISGGQQQRVALARAL 151 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 599999998632 011 2456777888888877665554 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+++|++|+||||||+||+.+...+.+.|+++.++ .++|+|+|||+++.+..-+|
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~e~~~laD 205 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ--FNITSLYVTHDQSEAFAVSD 205 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCC
Confidence 9999999999999999999999999999888642 25899999999998755444
No 127
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-41 Score=350.33 Aligned_cols=195 Identities=27% Similarity=0.417 Sum_probs=161.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC------CCCHH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK------EVDIK 572 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~------~~~~~ 572 (709)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++. ..+..
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999974 46999999999999999999999999999999999999999999999999873 12346
Q ss_pred HHhcceEEEcccCccccc-CHHHHhccCCC--CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHH
Q 005203 573 WLRGRIGFVGQEPKLFRM-DISSNISYGCT--QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (709)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~--~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (709)
.+|++|+||+|++.+|.+ |+.|||.++.. ...+ .+++.++++..++.+++.+.| ..||||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qr 149 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP---------LHLSGGQQQR 149 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHH
Confidence 788999999999999975 99999975311 0112 233444455555544444433 4799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|||||+++|++|||||||++||+++...+.+.|+++++. ++|+|+|||+++.+..-+|
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~---~~tii~~sh~~~~~~~~~d 209 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAET---GITQVIVTHEVEVARKTAS 209 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHhcC
Confidence 99999999999999999999999999999999999987642 5899999999998765444
No 128
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-41 Score=358.15 Aligned_cols=194 Identities=32% Similarity=0.460 Sum_probs=165.4
Q ss_pred EEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHH----hc
Q 005203 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL----RG 576 (709)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~l----R~ 576 (709)
.++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 46688888863 469999999999999999999999999999999999999999999999999987765543 46
Q ss_pred ceEEEcccCccc-ccCHHHHhccCCC-----CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 577 RIGFVGQEPKLF-RMDISSNISYGCT-----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 577 ~I~~V~Qd~~LF-~gTI~eNI~~g~~-----~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
+|+||+|++.+| +.|++|||.++.. ....++++.++++..++.+++.+.|. .||||||||++|||
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~Gq~qrv~lAr 173 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD---------ELSGGMQQRVGLAR 173 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcc---------cCCHHHHHHHHHHH
Confidence 899999999999 5799999987421 01123567778888888777766653 59999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+++|++|||||||++||+++.+.+.+.|+++.+. .++|+|++||+++.+...+|
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiii~tH~~~~~~~~~d 229 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE--LQKTIVFITHDLDEALRLGD 229 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcC
Confidence 999999999999999999999999999999887532 25899999999998877666
No 129
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-41 Score=360.44 Aligned_cols=200 Identities=30% Similarity=0.442 Sum_probs=164.1
Q ss_pred cEEEEEEEEEcCCCC--CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC----CCHH
Q 005203 499 RIDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE----VDIK 572 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~--~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~----~~~~ 572 (709)
.|+++||+|+|++.+ ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997431 1469999999999999999999999999999999999999999999999999863 3466
Q ss_pred HHhcceEEEcccC--cccccCHHHHhccCCC-CCCCHH----HHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHH
Q 005203 573 WLRGRIGFVGQEP--KLFRMDISSNISYGCT-QDIKQQ----DIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (709)
Q Consensus 573 ~lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~e----~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (709)
.+|+.||||+|++ .+|+.|+.|||.++.. ...+.+ ++.++++..++++.+. ++. -..||||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~------~~~--~~~LSgGq~qr 153 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL------ARS--PFELSGGQMRR 153 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh------hCC--cccCCHHHHHH
Confidence 7889999999997 7999999999998631 122333 3444555555532211 111 14799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|||||+.+|++||||||||+||+.+...+.+.|+++.++ .|.|+|+|||+++.+...+|
T Consensus 154 v~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~--~g~tviiitHd~~~~~~~~d 214 (290)
T PRK13634 154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE--KGLTTVLVTHSMEDAARYAD 214 (290)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999999887532 25899999999998877666
No 130
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=353.88 Aligned_cols=198 Identities=35% Similarity=0.585 Sum_probs=167.4
Q ss_pred CCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--C
Q 005203 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--V 569 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-----p~~G~I~idG~di~~--~ 569 (709)
.+.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 456999999999973 469999999999999999999999999999999999997 589999999999853 4
Q ss_pred CHHHHhcceEEEcccCcccccCHHHHhccCCC--CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChH
Q 005203 570 DIKWLRGRIGFVGQEPKLFRMDISSNISYGCT--QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGG 641 (709)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGG 641 (709)
+...+|++|+||+|++.+|..|++||+.++.. ...+ ++++.++++.+++.+++.. .++. ..||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-------KLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-------HHhcCCCCCCHH
Confidence 56678999999999999999999999987521 0122 2456777777776544322 2222 479999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 642 QkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||++|||||+++|++|||||||++||+++++.+.+.|+++.+ +.|+|+|||+++.+..-+|
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tiii~sH~~~~~~~~~d 223 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ----DYTVVIVTHNMQQAARCSD 223 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999999999998853 4899999999998766555
No 131
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-41 Score=356.08 Aligned_cols=196 Identities=29% Similarity=0.474 Sum_probs=170.4
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
++++||+++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++...+...+++.++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999743 46999999999999999999999999999999999999999999999999998777788899999
Q ss_pred EEcccC--cccccCHHHHhccCCC-CCCCH----HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 580 FVGQEP--KLFRMDISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 580 ~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~----e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
||+|++ .+|+.|+.||+.++.. ...+. +++.++++..++.++..+.| ..||||||||++|||||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrl~laraL 152 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP---------HHLSGGEKKRVAIAGVI 152 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHHHHHH
Confidence 999997 4889999999987521 02232 34677777778777666554 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+.+|++|||||||++||+.+.+.+.+.|+++.++ .++|+|++||+++.+...+|
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvli~tH~~~~~~~~~d 206 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET--YGMTVIFSTHQLDLVPEMAD 206 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCC
Confidence 9999999999999999999999999999987642 25899999999999877666
No 132
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-42 Score=364.31 Aligned_cols=191 Identities=30% Similarity=0.534 Sum_probs=172.2
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
..|+++||+.+|.+ ..+++|+||+|++||.+++.|||||||||++++|+||.+|++|+|.+||+|+.++++. ++.
T Consensus 4 ~~l~i~~v~k~yg~---~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecCC---eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 35999999999983 5799999999999999999999999999999999999999999999999999997765 789
Q ss_pred eEEEcccCccc-ccCHHHHhccCCC--CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 578 IGFVGQEPKLF-RMDISSNISYGCT--QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 578 I~~V~Qd~~LF-~gTI~eNI~~g~~--~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
||+|+|+.-|| ..||+|||+||-. .... ++++.++++.+++.++-.+.|.. |||||+||+||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~q---------LSGGQqQRVALAR 149 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQ---------LSGGQQQRVALAR 149 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhh---------hChHHHHHHHHHH
Confidence 99999999999 7999999999953 1122 24889999999999988887755 9999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
||..+|++|+||||-||||.+-...++..++++.++ .|.|.|+|||+.+...
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~--~giT~i~VTHDqeEAl 201 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE--LGITFVYVTHDQEEAL 201 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHh--cCCeEEEEECCHHHHh
Confidence 999999999999999999999999999999888755 4899999999987643
No 133
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-41 Score=355.53 Aligned_cols=198 Identities=35% Similarity=0.512 Sum_probs=169.4
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+|+|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 38999999999853234699999999999999999999999999999999999999999999999999887778899999
Q ss_pred EEEcccC--cccccCHHHHhccCCC-CCCCH----HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005203 579 GFVGQEP--KLFRMDISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (709)
Q Consensus 579 ~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~----e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (709)
+||+|++ .++..|+.|||.++.. ...+. +++.++++..++.++..+.| ..||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lAra 154 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP---------ARLSGGQKQRVAVAGI 154 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 4778999999987521 12233 34566777777776655433 4699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+++|++|||||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.+.. +|
T Consensus 155 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tiil~sH~~~~~~~-~d 208 (277)
T PRK13642 155 IALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK--YQLTVLSITHDLDEAAS-SD 208 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHh-CC
Confidence 99999999999999999999999999999988642 25899999999999864 55
No 134
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-41 Score=352.10 Aligned_cols=194 Identities=24% Similarity=0.406 Sum_probs=169.1
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999973 46999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcccCccccc-CHHHHhccCCC---------CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005203 580 FVGQEPKLFRM-DISSNISYGCT---------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (709)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~---------~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (709)
||+|++.+|.+ |+.||+.++.. +..+++++.++++..++.++..+.| ..||||||||++||
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la 150 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL---------TDLSGGQRQRAFLA 150 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc---------ccCCHHHHHHHHHH
Confidence 99999999977 99999987521 0112346677777777766554432 46999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 650 RAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 650 RALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++++|++|||||||++||+++.+.+.+.|+++.+. ++|+|+|||+++.+..-+|
T Consensus 151 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~---~~tiii~tH~~~~~~~~~d 206 (255)
T PRK11231 151 MVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ---GKTVVTVLHDLNQASRYCD 206 (255)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC---CCEEEEEECCHHHHHHhcC
Confidence 9999999999999999999999999999999887542 5899999999998876555
No 135
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.5e-41 Score=339.04 Aligned_cols=192 Identities=26% Similarity=0.428 Sum_probs=159.5
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999974 469999999999999999999999999999999999999999999999999875 4567889999
Q ss_pred EEcccCccc-ccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCE
Q 005203 580 FVGQEPKLF-RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTI 658 (709)
Q Consensus 580 ~V~Qd~~LF-~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~I 658 (709)
|++|++.++ ..|++||+.++.....+++++.++++..++.+.. +..+ ..||||||||++||||++++|++
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~--~~LS~G~~~rv~laral~~~p~~ 148 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI-------DYPC--GLLSSGQKRQVALLRLWMSKAKL 148 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhh-------hCCh--hhcCHHHHHHHHHHHHHhcCCCE
Confidence 999999996 6899999998631122233444444444443222 2211 36999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 659 LILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 659 LILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||||++||+++...+.+.|+++.+. ++|+|++||+++.+.. +|
T Consensus 149 lilDEP~~~LD~~~~~~l~~~l~~~~~~---~~tiii~sh~~~~~~~-~d 194 (200)
T PRK13540 149 WLLDEPLVALDELSLLTIITKIQEHRAK---GGAVLLTSHQDLPLNK-AD 194 (200)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHHHc---CCEEEEEeCCchhccc-cc
Confidence 9999999999999999999999987532 6899999999987644 44
No 136
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-41 Score=354.09 Aligned_cols=196 Identities=27% Similarity=0.403 Sum_probs=170.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4899999999974 4699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcccCccccc-CHHHHhccCCC---------CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 579 GFVGQEPKLFRM-DISSNISYGCT---------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~---------~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
+||+|++.+|.+ |+.||+.++.. +..+++++.++++..++.+++...| ..||||||||++|
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l 158 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV---------DSLSGGERQRAWI 158 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCCHHHHHHHHH
Confidence 999999877654 99999987521 0123456777888888877666554 3699999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+.+|++|||||||++||+++.+.+.+.|+++.+. .++|+|+|||+++.+..-+|
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~--~~~tiii~sH~~~~i~~~~d 216 (265)
T PRK10575 159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE--RGLTVIAVLHDINMAARYCD 216 (265)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999887532 25899999999998876665
No 137
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-41 Score=356.93 Aligned_cols=197 Identities=31% Similarity=0.506 Sum_probs=165.6
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC--CCCHHHHhc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK--EVDIKWLRG 576 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~--~~~~~~lR~ 576 (709)
-|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 256999999999999999999999999999999999999999999999999984 344667899
Q ss_pred ceEEEcccC--cccccCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005203 577 RIGFVGQEP--KLFRMDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (709)
Q Consensus 577 ~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (709)
.||||+|++ .+|+.|++|||.++.. ...+ ++++.++++..+++++..+- -.+||||||||++||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~---------~~~LS~G~~qrl~la 153 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKP---------THCLSFGQKKRVAIA 153 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCC---------cccCCHHHHHHHHHH
Confidence 999999998 6889999999987521 0122 24456666666665543221 147999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 650 RAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 650 RALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||+.+|++|||||||++||+++...+.+.|+++.++ .|+|+|+|||+++.+..-+|
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tillvsH~~~~~~~~~d 210 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE--LGLTIIIATHDIDIVPLYCD 210 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCC
Confidence 9999999999999999999999999999999988642 25899999999998876565
No 138
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-41 Score=355.00 Aligned_cols=200 Identities=30% Similarity=0.446 Sum_probs=168.1
Q ss_pred CCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCC--C
Q 005203 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKE--V 569 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----~~G~I~idG~di~~--~ 569 (709)
.+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||+++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 357999999999973 4699999999999999999999999999999999999985 89999999999864 3
Q ss_pred CHHHHhcceEEEcccCcccccCHHHHhccCCC------CCC-CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHH
Q 005203 570 DIKWLRGRIGFVGQEPKLFRMDISSNISYGCT------QDI-KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQ 642 (709)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~------~~~-~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQ 642 (709)
+...+|+.|+||+|++.+|.+|+.||+.++.. +.. .++++.++++..++.+++... ++.. -..|||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LSgGq 168 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDR---LHEP--GTGLSGGQ 168 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHH---hhCC--cccCCHHH
Confidence 56678999999999999999999999987521 011 134566777777775544211 1111 14799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 643 kQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+...+|
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~----~~tiiivtH~~~~~~~~~d 230 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ----NYTIVIVTHSMQQAARVSQ 230 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc----CCeEEEEEcCHHHHHhhCC
Confidence 9999999999999999999999999999999999999998864 3799999999999877766
No 139
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.4e-41 Score=341.22 Aligned_cols=191 Identities=27% Similarity=0.454 Sum_probs=159.5
Q ss_pred EEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH----HHHhcc
Q 005203 502 FVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI----KWLRGR 577 (709)
Q Consensus 502 ~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~----~~lR~~ 577 (709)
++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++. ...|+.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4799999973 469999999999999999999999999999999999999999999999999765432 346788
Q ss_pred eEEEcccCcccc-cCHHHHhccCCC-----CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005203 578 IGFVGQEPKLFR-MDISSNISYGCT-----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (709)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~-----~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (709)
++||+|++.+|. .|++||+.++.. ....++++.++++..++.++..+.+ ..||||||||++||||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qr~~lara 148 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI---------YELSGGEQQRVALARA 148 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCCh---------hhCCHHHHHHHHHHHH
Confidence 999999999997 799999987421 0112345666677666655433322 4699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+++|++|||||||++||+++.+.+.+.|+++.++ +.|+|+|||+++.+.. +|
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~---~~tii~~sh~~~~~~~-~d 201 (206)
T TIGR03608 149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDE---GKTIIIVTHDPEVAKQ-AD 201 (206)
T ss_pred HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHhh-cC
Confidence 99999999999999999999999999999987642 5899999999986543 44
No 140
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.2e-41 Score=371.08 Aligned_cols=195 Identities=29% Similarity=0.462 Sum_probs=174.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999974 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCcc-cccCHHHHhccCCC---------CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 579 GFVGQEPKL-FRMDISSNISYGCT---------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 579 ~~V~Qd~~L-F~gTI~eNI~~g~~---------~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
|||+|++.+ |+.|++||+.++.. +..+++++.++++..++.++..+.+ ..||||||||++|
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~---------~~LSgGerQRv~I 150 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV---------TSLSGGERQRVLL 150 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHH
Confidence 999999998 78999999987631 1223567788888888877665432 3699999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+++|++|+|||||++||+.+...+.+.|+++.++ ++|+|+++|+++.+..-+|
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~---g~TIIivsHdl~~~~~~ad 207 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD---GKTAVAAIHDLDLAARYCD 207 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc---CCEEEEEECCHHHHHHhCC
Confidence 99999999999999999999999999999999998643 5899999999999987776
No 141
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.1e-41 Score=348.69 Aligned_cols=194 Identities=31% Similarity=0.512 Sum_probs=161.7
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC--CHHHHhcc
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV--DIKWLRGR 577 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~--~~~~lR~~ 577 (709)
|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999973 4699999999999999999999999999999999999999999999999998764 34577889
Q ss_pred eEEEcccCcccc-cCHHHHhccCCC--CCCCH----HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 578 IGFVGQEPKLFR-MDISSNISYGCT--QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~~----e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
++|++|++.+|. .|++||+.++.. ...+. +++.++++..++.+...+.| ..||||||||++|||
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~la~ 149 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP---------SELSGGQQQRVAIAR 149 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh---------hhcCHHHHHHHHHHH
Confidence 999999999986 699999987521 01222 23444444444444333322 479999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+++|++|+|||||++||+++...+.+.|+++.+. ++|+|+|||+++.+..-+|
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~---~~tiii~sH~~~~~~~~~d 204 (240)
T PRK09493 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE---GMTMVIVTHEIGFAEKVAS 204 (240)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999887642 5899999999998765555
No 142
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4e-41 Score=339.62 Aligned_cols=190 Identities=23% Similarity=0.352 Sum_probs=165.8
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.... ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 689999999974 46999999999999999999999999999999999999999999999999987654 56788999
Q ss_pred EEcccCcccc-cCHHHHhccCCCC--CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCC
Q 005203 580 FVGQEPKLFR-MDISSNISYGCTQ--DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (709)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~~--~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p 656 (709)
|++|++.++. .|++|||.++.+. ..+++++.++++..++.++..+.+ ..||||||||++|||||+++|
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPV---------RQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHHHHhcCC
Confidence 9999999886 6999999876321 134567788888888876654322 469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 657 TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
++|+|||||++||+++.+.+.+.|+++.++ +.|+|+|||+++.+..
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~---~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAEQ---GGMVILTTHQDLPVAS 194 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHC---CCEEEEEecChhhhcc
Confidence 999999999999999999999999887532 5899999999998865
No 143
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=3e-41 Score=367.07 Aligned_cols=194 Identities=28% Similarity=0.440 Sum_probs=166.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 4699999999999999999999999999999999999999999999999999876653 6789
Q ss_pred EEEcccCcccc-cCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 579 GFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
|||+|++.||. .|++|||.|+.. ...+ ++++.++++..++.++..+.| ..||||||||++|||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~---------~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP---------GQLSGGQQQRVALARAL 149 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999995 799999998732 1112 345666666666655554444 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+++|++|+||||||+||+.+.+.+.+.|+++.++ .+.|+|+|||+++.+..-+|
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~~~tvi~vTHd~~ea~~l~d 203 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR--LGVTTIMVTHDQEEALSMAD 203 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCC
Confidence 9999999999999999999999999999887643 25899999999998766555
No 144
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=6.9e-41 Score=343.05 Aligned_cols=194 Identities=28% Similarity=0.446 Sum_probs=163.8
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.|
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4899999999973 4699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcccCcccccCHHHHhccCC---CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhc
Q 005203 579 GFVGQEPKLFRMDISSNISYGC---TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 579 ~~V~Qd~~LF~gTI~eNI~~g~---~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALl 653 (709)
+||+|++.+|..|++||+.++. ....+++++.++++..++.+ +.... ..||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999998641 11112333444444444422 22222 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++|||||||++||+++.+.+.+.|+++.++ .+.|+|+|||+++.+.. +|
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sh~~~~~~~-~d 205 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVRE--QNIAVLWVTHDKDEINH-AD 205 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECChHHHHh-CC
Confidence 999999999999999999999999999987532 25899999999998764 65
No 145
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-41 Score=338.10 Aligned_cols=198 Identities=35% Similarity=0.475 Sum_probs=165.1
Q ss_pred cEEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC-CHHHHhc
Q 005203 499 RIDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV-DIKWLRG 576 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~-~~~~lR~ 576 (709)
.++++|+++.|+... ..++++||||+|++||+++||||||||||||.++|+|+.+|++|+|.+||.++... ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999998531 12599999999999999999999999999999999999999999999999887553 3447889
Q ss_pred ceEEEcccCcc-c--ccCHHHHhc----cCCCCCCCHHHHHHHHHHHhhHH-HHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 577 RIGFVGQEPKL-F--RMDISSNIS----YGCTQDIKQQDIEWAAKQAYAHD-FIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 577 ~I~~V~Qd~~L-F--~gTI~eNI~----~g~~~~~~~e~i~~aa~~a~l~d-~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
.|-+|+|||+- + .-||.+=|. ...- +..++++.++++.+|+.+ |..+.|+ .|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~-~~~~~~i~~~L~~VgL~~~~l~R~P~---------eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGL-SKSQQRIAELLDQVGLPPSFLDRRPH---------ELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCc-cHHHHHHHHHHHHcCCCHHHHhcCch---------hcChhHHHHHHH
Confidence 99999999973 1 334444432 2111 234566888888888865 4455554 499999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||.-+|++||||||||+||+-..+.|.+.+..++++ .+.|.|+|||+++.+..-||
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~--~~lt~l~IsHdl~~v~~~cd 210 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE--RGLTYLFISHDLALVEHMCD 210 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh--cCceEEEEeCcHHHHHHHhh
Confidence 99999999999999999999999999999999998876 46799999999999998887
No 146
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-41 Score=353.71 Aligned_cols=194 Identities=28% Similarity=0.488 Sum_probs=165.3
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC-HHHHhcce
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-IKWLRGRI 578 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~-~~~lR~~I 578 (709)
|+++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ...+++.|
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 6899999999642 56999999999999999999999999999999999999999999999999998765 46788899
Q ss_pred EEEcccCc--ccccCHHHHhccCCCC-CCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005203 579 GFVGQEPK--LFRMDISSNISYGCTQ-DIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (709)
Q Consensus 579 ~~V~Qd~~--LF~gTI~eNI~~g~~~-~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (709)
+||+|++. +++.|+.|||.++... ..+ ++++.++++..++.+++...| ..||||||||++||||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~lara 150 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP---------KTLSGGQGQCVALAGI 150 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc---------ccCCHHHHHHHHHHHH
Confidence 99999985 6789999999886321 122 344566666666666554433 4699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+++|++|||||||++||+.+...+.+.|+++.++ |.|+|++||+++.+.. +|
T Consensus 151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~---g~til~~tH~~~~~~~-~d 203 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK---GKTIVYITHNLEELHD-AD 203 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHhh-CC
Confidence 99999999999999999999999999999987642 6899999999998754 54
No 147
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=352.30 Aligned_cols=198 Identities=32% Similarity=0.469 Sum_probs=164.6
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----cceEEECCEeCC--CCCH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-----NGQILIDGFPIK--EVDI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~-----~G~I~idG~di~--~~~~ 571 (709)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999974 46999999999999999999999999999999999999974 999999999987 4556
Q ss_pred HHHhcceEEEcccCccccc-CHHHHhccCCC-CC------CCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRM-DISSNISYGCT-QD------IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQK 643 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~------~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQk 643 (709)
..+|+.|+||+|++.+|.+ |+.||+.++.. .. ..++++.++++..++.+++... .+.. -..||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LS~G~~ 155 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDR---LNDY--PSNLSGGQR 155 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhh---hccC--hhhCCHHHH
Confidence 6788999999999999975 99999987521 01 1123455666666654433211 1111 147999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+...+|
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tiii~sH~~~~~~~~~d 216 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK----EYTIVLVTHSPAQAARVSD 216 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh----CCEEEEEECCHHHHHhhCC
Confidence 999999999999999999999999999999999999998864 3899999999998877776
No 148
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-41 Score=359.45 Aligned_cols=198 Identities=27% Similarity=0.403 Sum_probs=163.3
Q ss_pred cEEEEEEEEEcCCCC--CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC--------
Q 005203 499 RIDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE-------- 568 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~--~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~-------- 568 (709)
.|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999997531 1369999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CCHHHHhcceEEEcccC--cccccCHHHHhccCCC-CCCCH----HHHHHHHHHHhhH-HHHHc
Q 005203 569 ----------------VDIKWLRGRIGFVGQEP--KLFRMDISSNISYGCT-QDIKQ----QDIEWAAKQAYAH-DFIMS 624 (709)
Q Consensus 569 ----------------~~~~~lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~----e~i~~aa~~a~l~-d~I~~ 624 (709)
.+...+|+.||||+|+| .+|..|+.|||.|+.. ...+. +++.++++..++. ++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 13467899999999986 7899999999998731 12233 3345555555553 23222
Q ss_pred CCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 625 LPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 625 LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
-| ..||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+. |+|+|+|||+++.+.
T Consensus 162 ~~---------~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~---g~tiiivtHd~~~~~ 229 (305)
T PRK13651 162 SP---------FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ---GKTIILVTHDLDNVL 229 (305)
T ss_pred Ch---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEeeCHHHHH
Confidence 21 479999999999999999999999999999999999999999999988642 689999999999887
Q ss_pred hhcC
Q 005203 705 LSFD 708 (709)
Q Consensus 705 ~~~~ 708 (709)
..+|
T Consensus 230 ~~ad 233 (305)
T PRK13651 230 EWTK 233 (305)
T ss_pred HhCC
Confidence 7666
No 149
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3.7e-41 Score=338.21 Aligned_cols=190 Identities=26% Similarity=0.353 Sum_probs=163.8
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 578999999974 46999999999999999999999999999999999999999999999999988765 46788999
Q ss_pred EEcccCcccc-cCHHHHhccCCCC-CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCC
Q 005203 580 FVGQEPKLFR-MDISSNISYGCTQ-DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657 (709)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~~-~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ 657 (709)
|++|++.+|. .|++||+.++... ...++++.++++..++.+++...| ..||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPA---------AQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCCh---------hhcCHHHHHHHHHHHHHhcCCC
Confidence 9999999986 7999999875321 112446788888888877654322 3699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 658 ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
+|+|||||++||+++.+.+.+.|+++.++ +.|+|+|||++..+.+
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~---~~tii~~sH~~~~~~~ 192 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLAR---GGIVLLTTHQDLGLVE 192 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhC---CCEEEEEEcccccccc
Confidence 99999999999999999999999887533 5899999999865543
No 150
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-41 Score=346.68 Aligned_cols=198 Identities=24% Similarity=0.393 Sum_probs=160.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHH-Hhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~-lR~~ 577 (709)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+... +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999973 47999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred eEEEcccCccccc-CHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHhccC
Q 005203 578 IGFVGQEPKLFRM-DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe-~~LSGGQkQRIaLARALlr~ 655 (709)
++||+|++.+|.+ |++||+.++.. ..+.++..+.+ ++.+..++...++.-.. ..||||||||++|||||+++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~-----~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGF-FAERDQFQERI-----KWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhh-ccChhHHHHHH-----HHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 99999988532 12222222211 11222221111221112 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 656 PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|+|||||++||+++.+.+.+.|+++.+. ++|+|++||+++.+..-+|
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~---~~tiii~sH~~~~~~~~~d 205 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ---GMTIFLVEQNANQALKLAD 205 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHC---CCEEEEEeCcHHHHHhhCC
Confidence 9999999999999999999999999987642 6899999999998776655
No 151
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=8.3e-41 Score=342.35 Aligned_cols=200 Identities=35% Similarity=0.494 Sum_probs=159.5
Q ss_pred EEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH---HHHh
Q 005203 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI---KWLR 575 (709)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~---~~lR 575 (709)
|+++||+|+|++.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999997431 1379999999999999999999999999999999999999999999999999988763 5788
Q ss_pred cceEEEcccC--ccc-ccCHHHHhccCCC---CCCCHHHHHHHHHHHhhHHHHHcCCCCcc-cccCC--CCCChHHHHHH
Q 005203 576 GRIGFVGQEP--KLF-RMDISSNISYGCT---QDIKQQDIEWAAKQAYAHDFIMSLPSGYE-TLVDD--DLLSGGQKQRI 646 (709)
Q Consensus 576 ~~I~~V~Qd~--~LF-~gTI~eNI~~g~~---~~~~~e~i~~aa~~a~l~d~I~~LP~Gyd-T~vGe--~~LSGGQkQRI 646 (709)
+.++|++|++ .++ ..|++|||.++.. ...++++..+++ ++.+..+ |++ ..... ..||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 9999999999 344 5899999975411 011122211111 2333333 232 22232 47999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 647 aLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||+.+|++|+|||||++||+++...+.+.|+++.++ .++|+|++||+++.+...+|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d 214 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE--LGLTLLFITHDLGVVAKIAD 214 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcC
Confidence 9999999999999999999999999999999999887641 14899999999998876666
No 152
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.5e-41 Score=335.52 Aligned_cols=197 Identities=34% Similarity=0.474 Sum_probs=170.2
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH---HH
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK---WL 574 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~---~l 574 (709)
..|++++|+|+|.+ +.|++|+||+|++||+++|+||||||||||+|++.|+..|++|+|.++|.|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 35999999999974 5799999999999999999999999999999999999999999999999999888754 67
Q ss_pred hcceEEEcccCccc-ccCHHHHhccCCC--CCCCHHHHHH----HHHHHhhHHH-HHcCCCCcccccCCCCCChHHHHHH
Q 005203 575 RGRIGFVGQEPKLF-RMDISSNISYGCT--QDIKQQDIEW----AAKQAYAHDF-IMSLPSGYETLVDDDLLSGGQKQRI 646 (709)
Q Consensus 575 R~~I~~V~Qd~~LF-~gTI~eNI~~g~~--~~~~~e~i~~----aa~~a~l~d~-I~~LP~GydT~vGe~~LSGGQkQRI 646 (709)
|+++|+++|+--|| +-|+.||+.|--. .+.+++.+++ -++.+|+... -+.+| +.||||.+.|.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P---------sELSGGM~KRv 154 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP---------SELSGGMRKRV 154 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc---------hhhcchHHHHH
Confidence 99999999999999 6799999998321 2455665554 3445555554 34444 46999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 647 aLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||+.-+|+|+++|||||+||+.+...+.+.|+++++. -+.|+|+|||+++++..-+|
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~--lg~T~i~VTHDl~s~~~i~D 214 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDA--LGLTVIMVTHDLDSLLTIAD 214 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh--hCCEEEEEECChHHHHhhhc
Confidence 9999999999999999999999999999999999988754 46899999999999877666
No 153
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-41 Score=354.94 Aligned_cols=196 Identities=30% Similarity=0.480 Sum_probs=161.1
Q ss_pred EEEEEEEEEcCCCC--CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC----CHHH
Q 005203 500 IDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV----DIKW 573 (709)
Q Consensus 500 I~~~nVsF~Y~~~~--~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~----~~~~ 573 (709)
|+++||+|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997531 13699999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcceEEEcccC--cccccCHHHHhccCCC-CCCCHHHH----HHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHH
Q 005203 574 LRGRIGFVGQEP--KLFRMDISSNISYGCT-QDIKQQDI----EWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (709)
Q Consensus 574 lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~e~i----~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (709)
+|+.|+||+|++ .+|++|++|||.++.. ...+.++. .++++..++.+ ..... ..|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 889999999998 6899999999987521 12233333 23333333321 11122 479999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|||||+++|++|||||||++||+++.+.+.+.|+++.+. ++|+|+|||+++.+...+|
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~---~~tiiivsH~~~~~~~~~d 213 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS---GMTIVLVTHLMDDVANYAD 213 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC---CCEEEEEeccHHHHHHhCC
Confidence 999999999999999999999999999999999999987642 5899999999998766555
No 154
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=5.2e-41 Score=349.63 Aligned_cols=195 Identities=33% Similarity=0.472 Sum_probs=163.4
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC---------
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD--------- 570 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~--------- 570 (709)
|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999974 46999999999999999999999999999999999999999999999999987553
Q ss_pred ----HHHHhcceEEEcccCcccc-cCHHHHhccCCC--CCC----CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCC
Q 005203 571 ----IKWLRGRIGFVGQEPKLFR-MDISSNISYGCT--QDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLS 639 (709)
Q Consensus 571 ----~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LS 639 (709)
...+|+.++||+|++.+|. .|+.||+.++.. ... .++++.++++..++.+...+.| ..||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS 148 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP---------AQLS 148 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh---------hhcC
Confidence 2467899999999999985 899999987421 011 2244555666666655544433 4699
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 640 GGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||||++|||||+++|++|||||||++||+++...+.+.|+++.+. .+.|+|+|||+++.+..-+|
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d 215 (252)
T TIGR03005 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE--HDLTMLLVTHEMGFAREFAD 215 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHhcC
Confidence 99999999999999999999999999999999999999999887542 25899999999998765454
No 155
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=6.2e-41 Score=342.10 Aligned_cols=197 Identities=29% Similarity=0.443 Sum_probs=166.0
Q ss_pred EEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH---HHh
Q 005203 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK---WLR 575 (709)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~---~lR 575 (709)
++++||+++|++.+ ...+|+|+||++++||++||+||||||||||+++|+|+++|++|+|++||.++.+.+.. .+|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999997431 25699999999999999999999999999999999999999999999999999876643 578
Q ss_pred cceEEEcccCcccc-cCHHHHhccCCC--CCCCH----HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 576 GRIGFVGQEPKLFR-MDISSNISYGCT--QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 576 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~~----e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
+.|+|++|++.+|. .|+.||+.++.. +..+. +++.++++..++.+++.+.| ..||||||||++|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrv~l 152 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP---------HNLSGGQKQRVAI 152 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence 89999999999998 799999987532 11222 34566666666666666555 3699999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+++|++|+|||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.. ..+|
T Consensus 153 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sh~~~~~-~~~d 209 (220)
T TIGR02982 153 ARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE--QGCTILIVTHDNRIL-DVAD 209 (220)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHH-hhCC
Confidence 99999999999999999999999999999999887642 258999999999854 3444
No 156
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5.3e-41 Score=353.04 Aligned_cols=196 Identities=26% Similarity=0.381 Sum_probs=162.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH---HHh
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK---WLR 575 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~---~lR 575 (709)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999973 4699999999999999999999999999999999999999999999999999876543 457
Q ss_pred cceEEEcccCccccc-CHHHHhccCCC--CCCCH----HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 576 GRIGFVGQEPKLFRM-DISSNISYGCT--QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 576 ~~I~~V~Qd~~LF~g-TI~eNI~~g~~--~~~~~----e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
+.|+||+|++.+|.+ |+.||+.++.. ...+. +++.++++..++.+.....| ..||||||||++|
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrv~l 154 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP---------SELSGGMARRAAL 154 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHH
Confidence 889999999999986 99999986421 01122 23444445444433322221 4799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+++|++|||||||++||+++.+.+.+.|+++.+. .++|+|+|||+++.+...+|
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiiivsH~~~~~~~~~d 212 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA--LGVTCVVVSHDVPEVLSIAD 212 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhhC
Confidence 99999999999999999999999999999999987532 25899999999998876665
No 157
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=4.8e-41 Score=331.90 Aligned_cols=164 Identities=35% Similarity=0.608 Sum_probs=150.7
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++|++|+|++. ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++... ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999854 24799999999999999999999999999999999999999999999999998766 667899999
Q ss_pred EEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEE
Q 005203 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTIL 659 (709)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~IL 659 (709)
||+|++.+|++|++||| -..||||||||++||||++++|++|
T Consensus 79 ~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred EEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 3469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 660 ILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 660 ILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. +|
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sh~~~~~~~-~d 164 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVLK----DKTLIWITHHLTGIEH-MD 164 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcC----CCEEEEEecCHHHHHh-CC
Confidence 99999999999999999999988753 5899999999998764 55
No 158
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=5.6e-41 Score=364.90 Aligned_cols=194 Identities=30% Similarity=0.492 Sum_probs=167.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+.+. .++.|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3889999999974 469999999999999999999999999999999999999999999999999987653 46789
Q ss_pred EEEcccCcccc-cCHHHHhccCCCC-----CCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 579 GFVGQEPKLFR-MDISSNISYGCTQ-----DIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~~-----~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
|||+|++.+|. .|++|||.|+... ..+ ++++.++++..++.++..+.| ..||||||||++|
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGq~QRval 147 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP---------AQLSGGQKQRVAL 147 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence 99999999997 5999999986320 112 346667777777766655544 3699999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+++|++|+||||||+||+++...+.+.|+++.++ .++|+|+|||+++.+..-+|
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~g~tii~vTHd~~ea~~~~D 205 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE--LKFTSVFVTHDQEEAMEVAD 205 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999988642 25899999999998776666
No 159
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-41 Score=334.00 Aligned_cols=197 Identities=34% Similarity=0.493 Sum_probs=173.4
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC---HHHHh
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD---IKWLR 575 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~---~~~lR 575 (709)
.|+++||+-+||+. ..+|+||||+|++||.|||+||||||||||++.|.|+.+|++|+|.+||.++.... +..||
T Consensus 3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 48999999999853 68999999999999999999999999999999999999999999999999998887 67889
Q ss_pred cceEEEcccCccc-ccCHHHHhccCCC-------------CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChH
Q 005203 576 GRIGFVGQEPKLF-RMDISSNISYGCT-------------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGG 641 (709)
Q Consensus 576 ~~I~~V~Qd~~LF-~gTI~eNI~~g~~-------------~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGG 641 (709)
++||+++|++-|- .-|+.+|+..|.- +..+..+..+|++..|+.|...+- .++||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr---------a~~LSGG 151 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR---------ASTLSGG 151 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH---------hccCCcc
Confidence 9999999999998 5569999976532 123455667788888888775431 2479999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 642 QkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+||++|||||+++|+|++=|||||+||+++.+.|++.|+++.++ .|.|+|+.-|.......-||
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~--~g~Tvi~nLH~vdlA~~Y~~ 216 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQE--DGITVIVNLHQVDLAKKYAD 216 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHH--cCCEEEEEechHHHHHHHHh
Confidence 999999999999999999999999999999999999999988754 57999999999998877665
No 160
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-41 Score=351.24 Aligned_cols=198 Identities=30% Similarity=0.480 Sum_probs=167.2
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--CC
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--VD 570 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-----p~~G~I~idG~di~~--~~ 570 (709)
..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999974 469999999999999999999999999999999999998 699999999999863 46
Q ss_pred HHHHhcceEEEcccCcccccCHHHHhccCCCC-CC---CHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHH
Q 005203 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCTQ-DI---KQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (709)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~---~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (709)
...+|+.|+||+|++.+|.+|++||+.++... .. .++++.++++.+++.+.+ ++.... ..|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 67889999999999999999999999976320 11 134555666666654332 222222 479999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcCC
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFDC 709 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~~ 709 (709)
|++|||||+++|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+..-+|.
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~----~~tiiivtH~~~~~~~~~d~ 222 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK----NFTIVIVTHNMQQAVRVSDM 222 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhcCE
Confidence 99999999999999999999999999999999999998854 48999999999998887773
No 161
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.5e-41 Score=367.66 Aligned_cols=183 Identities=36% Similarity=0.487 Sum_probs=161.9
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHH----hcceEEEcccCcccc-
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL----RGRIGFVGQEPKLFR- 589 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~l----R~~I~~V~Qd~~LF~- 589 (709)
+.+++|+||+|++||.++|+||||||||||+++|+|+++|++|+|++||.|+..++...+ |+.|+||+|++.||.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 569999999999999999999999999999999999999999999999999999998887 889999999999997
Q ss_pred cCHHHHhccCCC-CC----CCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 005203 590 MDISSNISYGCT-QD----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEA 664 (709)
Q Consensus 590 gTI~eNI~~g~~-~~----~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEa 664 (709)
.|++|||.++.. .. ...+++.++++.+++.+++.+.|. +||||||||++|||||+++|+||+||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~---------~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD---------ELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChh---------hCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 599999998632 01 124567788888888777666554 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 665 TSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 665 TSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+||+.+.+.+++.+.++.+. .++|+|+|||+++.+...+|
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~--~~~Tii~vTHd~~ea~~~~d 198 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQAT--LQKTIVFITHDLDEAIRIGD 198 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999887532 25899999999998877666
No 162
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-41 Score=353.99 Aligned_cols=198 Identities=29% Similarity=0.496 Sum_probs=170.0
Q ss_pred cEEEEEEEEEcCCCC---CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC-HHHH
Q 005203 499 RIDFVDVSFRYSSRE---MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-IKWL 574 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~---~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~-~~~l 574 (709)
-|+++||+++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997431 247999999999999999999999999999999999999999999999999997654 3567
Q ss_pred hcceEEEcccC--cccccCHHHHhccCCCC-CCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005203 575 RGRIGFVGQEP--KLFRMDISSNISYGCTQ-DIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (709)
Q Consensus 575 R~~I~~V~Qd~--~LF~gTI~eNI~~g~~~-~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (709)
|+.||||+|++ .+|..|+.||+.++... ..+ ++++.++++..++.++..+.| ..||||||||++
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrv~ 154 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP---------HLLSGGQKQRVA 154 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHH
Confidence 89999999998 47878999999986210 112 356777888888888777665 469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||+++|++||||||||+||+.+...+.+.|+++.++ .++|+|+|||+++.+.. +|
T Consensus 155 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tillvtH~~~~~~~-~d 212 (280)
T PRK13633 155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK--YGITIILITHYMEEAVE-AD 212 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecChHHHhc-CC
Confidence 999999999999999999999999999999999988532 25899999999998865 66
No 163
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-41 Score=349.17 Aligned_cols=198 Identities=32% Similarity=0.500 Sum_probs=166.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCCCCHHH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKEVDIKW 573 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----~~G~I~idG~di~~~~~~~ 573 (709)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999974 4699999999999999999999999999999999999984 6999999999998888888
Q ss_pred HhcceEEEcccCccc-ccCHHHHhccCCC-C------CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHH
Q 005203 574 LRGRIGFVGQEPKLF-RMDISSNISYGCT-Q------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (709)
Q Consensus 574 lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~-~------~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (709)
+|+.||||+|++.+| +.|++||+.++.. . ...++++.++++..++.+.+.. .+++.+ ..||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~~--~~LSgG~~qr 154 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLDAPA--GKLSGGQQQR 154 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhcCCc--ccCCHHHHHH
Confidence 999999999999755 6899999987521 0 1113456667777766543321 122222 4799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|||||+++|++|+|||||++||+++...+.+.|+++.+ ++|+|+|||+++.+..-+|
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~----~~tiii~sH~~~~~~~~~d 213 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK----DMTIVLVTHFPQQAARISD 213 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhcC
Confidence 9999999999999999999999999999999999998753 4899999999998776665
No 164
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-41 Score=366.99 Aligned_cols=194 Identities=27% Similarity=0.470 Sum_probs=166.0
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 4899999999974 469999999999999999999999999999999999999999999999999987654 35789
Q ss_pred EEEcccCcccc-cCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 579 GFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
|||+|++.+|. .|++|||.++.. ...+ ++++.++++..++.++..+.| ..||||||||++|||||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~---------~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTL 148 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 599999998632 0112 245667777777766655544 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+++|++|+||||||+||+++.+.+.+.|+++.++ .+.|+|+|||+++.+..-+|
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tvI~vTHd~~~~~~~~d 202 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLAD 202 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--hCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999887542 25899999999998776665
No 165
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-41 Score=352.09 Aligned_cols=194 Identities=29% Similarity=0.452 Sum_probs=162.6
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC--CCCHHHHhcc
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK--EVDIKWLRGR 577 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~--~~~~~~lR~~ 577 (709)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. +.+...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999973 46999999999999999999999999999999999999999999999999985 3345678899
Q ss_pred eEEEcccCc--ccccCHHHHhccCCC-CCCCH----HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 578 IGFVGQEPK--LFRMDISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 578 I~~V~Qd~~--LF~gTI~eNI~~g~~-~~~~~----e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
|+||+|++. +|..|+.||+.++.. ...+. +++.++++..++.++..+.| ..||||||||++|||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~lar 149 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPI---------QCLSHGQKKRVAIAG 149 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCc---------hhCCHHHHHHHHHHH
Confidence 999999986 678899999987411 11222 33455666666655432211 479999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+.+|++|||||||++||+++...+.+.|+++.+. ++|+|+|||+++.+..-+|
T Consensus 150 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~---g~tii~vtH~~~~~~~~~d 204 (271)
T PRK13638 150 ALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ---GNHVIISSHDIDLIYEISD 204 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999987642 5899999999998876565
No 166
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=9.6e-41 Score=344.30 Aligned_cols=195 Identities=33% Similarity=0.542 Sum_probs=159.3
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+... ++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999973 46999999999999999999999999999999999999999999999999998766544 45899
Q ss_pred EEcccCcc-cccCHHHHhccCCC-CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccC
Q 005203 580 FVGQEPKL-FRMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 580 ~V~Qd~~L-F~gTI~eNI~~g~~-~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~ 655 (709)
|++|++.+ +..|++||+.++.. ...+.++..+ .+.+.+..+ |++..... ..||||||||++|||||+++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999988 57899999987532 1122222111 123333332 44443433 48999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 656 PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|||||||++||+++.+.+.+.|+++.+. .++|+|+|||+++.+.. +|
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~-~d 200 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRD--QGLSVLWATHLVDEIEA-DD 200 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEecChhhHhh-CC
Confidence 9999999999999999999999999887531 25899999999998864 65
No 167
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.5e-40 Score=348.37 Aligned_cols=209 Identities=27% Similarity=0.427 Sum_probs=177.3
Q ss_pred HHHHHHHhcCCCCccccccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC
Q 005203 472 EKVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 472 ~Rl~~il~~~~e~~~~~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+.+.+++..++++. +..+.+...+.|+++||++. + +++|+|+||+|++||++||+||||||||||+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~nls~~--~---~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQEN---NDRKHSSDDNNLFFSNLCLV--G---APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhcccccc---cccccCCCCCeEEEEEEEEe--c---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 55667776655432 22233344567999999995 1 4699999999999999999999999999999999999
Q ss_pred CCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCccc
Q 005203 552 YEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYET 631 (709)
Q Consensus 552 ~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT 631 (709)
++|++|+|.+|| .|+||+|++.+|++|++||+.++. ..++.++.++++.+++.+.+..+|.+++|
T Consensus 87 ~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 87 LEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhccc--ccCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 999999999998 399999999999999999999873 23455677788888999999999999999
Q ss_pred ccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 632 LVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVL-RAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 632 ~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L-~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.+++ ..||||||||++|||||+++|++|||||||++||+++...+.+.+ +.+.. +.|+|+|||+++.+.. +|
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~----~~tIiiisH~~~~~~~-~d 226 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMA----NKTRILVTSKMEHLKK-AD 226 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhC----CCEEEEEeCChHHHHh-CC
Confidence 9876 599999999999999999999999999999999999999998764 55543 4899999999998753 44
No 168
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=9.2e-41 Score=348.83 Aligned_cols=197 Identities=29% Similarity=0.447 Sum_probs=163.4
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC--------
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV-------- 569 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~-------- 569 (709)
+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999974 4699999999999999999999999999999999999999999999999998642
Q ss_pred -----CHHHHhcceEEEcccCcccc-cCHHHHhccCCC--CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCC
Q 005203 570 -----DIKWLRGRIGFVGQEPKLFR-MDISSNISYGCT--QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDL 637 (709)
Q Consensus 570 -----~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~ 637 (709)
....+|+.++||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.++... . .-..
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~------~--~~~~ 152 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQG------K--YPVH 152 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhh------C--Cccc
Confidence 13577889999999999997 599999986410 0111 2345555555555443310 0 1147
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 638 LSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 638 LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||||||++|||||+++|++|||||||++||+++.+.+.+.|+++.+. ++|+|+|||+++.+...+|
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~---g~tiiivsH~~~~~~~~~d 220 (257)
T PRK10619 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE---GKTMVVVTHEMGFARHVSS 220 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999988642 6999999999998876665
No 169
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=7.9e-41 Score=365.79 Aligned_cols=194 Identities=28% Similarity=0.473 Sum_probs=169.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.|
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999974 4699999999999999999999999999999999999999999999999999876653 5789
Q ss_pred EEEcccCccccc-CHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 579 GFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
|||+|++.||.. |++|||.|+.. ...+ ++++.++++..++.++..+.|. .||||||||++|||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~---------~LSgGq~QRVaLARaL 159 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH---------QLSGGQQQRVAIARAV 159 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChh---------hCCHHHHHHHHHHHHH
Confidence 999999999955 99999998632 0112 3567788888888888877773 5999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+++|++|+||||||+||..+...+.+.|+++.++ .+.|+|+|||+++.+..-+|
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~g~tiI~vTHd~~ea~~laD 213 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRK--LGITFVFVTHDQEEALTMSD 213 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999987643 25899999999988765555
No 170
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-40 Score=327.91 Aligned_cols=162 Identities=37% Similarity=0.652 Sum_probs=149.6
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
++++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999974 36999999999999999999999999999999999999999999999999998765 67789999
Q ss_pred EEcccCccccc-CHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCE
Q 005203 580 FVGQEPKLFRM-DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTI 658 (709)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~I 658 (709)
||+|++.+|.+ |++||+. ||||||||++|||||+++|++
T Consensus 77 ~~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred EEecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 99999999986 9999984 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 659 LILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 659 LILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+|||||++||+.+.+.+.+.|+++.++ +.|+|+|||+++.+...+|
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~~---g~tiii~th~~~~~~~~~d 163 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKKE---GKTILLSSHILEEAERLCD 163 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHC---CCEEEEECCCHHHHHHhCC
Confidence 9999999999999999999999988643 5899999999998876665
No 171
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-41 Score=354.74 Aligned_cols=204 Identities=28% Similarity=0.467 Sum_probs=161.8
Q ss_pred CCcEEEEEEEEEcCCCC--CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC----C-
Q 005203 497 MGRIDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE----V- 569 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~~--~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~----~- 569 (709)
.+.|+++||+++|+++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35799999999997531 1359999999999999999999999999999999999999999999999999852 2
Q ss_pred CHHHHhcceEEEcccC--cccccCHHHHhccCCC-CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHH
Q 005203 570 DIKWLRGRIGFVGQEP--KLFRMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (709)
Q Consensus 570 ~~~~lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (709)
+...+|+.|+||+|++ .+|..|++|||.++.. ...+.++..+.++ .+.+. ..||.++ ... ..|||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~--~ll~~-~~L~~~~---~~~~~~~LS~Gq~q 157 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVP--ELLKL-VQLPEDY---VKRSPFELSGGQKR 157 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHH-cCCChhH---hcCChhhCCHHHHH
Confidence 4567889999999998 5788999999987531 0123333222111 11111 1233222 122 479999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|||||+++|++|||||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.+..-+|
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiiiisH~~~~~~~~~d 219 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE--YKKRIIMVTHNMDQVLRIAD 219 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCC
Confidence 999999999999999999999999999999999999887532 25899999999998876665
No 172
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.5e-40 Score=341.29 Aligned_cols=194 Identities=26% Similarity=0.402 Sum_probs=159.5
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHH-Hhcce
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGRI 578 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~-lR~~I 578 (709)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+... +++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999974 46999999999999999999999999999999999999999999999999998877654 46789
Q ss_pred EEEcccCccccc-CHHHHhccCCCC-CCCH-HHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhc
Q 005203 579 GFVGQEPKLFRM-DISSNISYGCTQ-DIKQ-QDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~~-~~~~-e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALl 653 (709)
+|++|++.+|.+ |++||+.++... ..++ +...++++..+ +++..... ..||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 999999876321 1111 22233333322 11222222 379999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++|+|||||++||+.+.+.+.+.|.++.+. .++|+|+|||+++.+..-+|
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d 200 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE--GGMAILLVEQYLDFARELAD 200 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999887642 25899999999998876665
No 173
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-40 Score=352.25 Aligned_cols=197 Identities=31% Similarity=0.513 Sum_probs=170.4
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc---ceEEECCEeCCCCCHHHHh
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN---GQILIDGFPIKEVDIKWLR 575 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~---G~I~idG~di~~~~~~~lR 575 (709)
.|+++|++|+|++. ..++++|+||+|++||++||+||||||||||+++|+|+++|++ |+|.+||.++...+...+|
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 48999999999753 2469999999999999999999999999999999999999998 8999999999887777889
Q ss_pred cceEEEcccC--cccccCHHHHhccCCC-CCCCH----HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 576 GRIGFVGQEP--KLFRMDISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 576 ~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~----e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
++||||+|++ .+++.|+.|||.++.. ...+. +++.++++..++.++..+.| ..||||||||++|
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LS~G~~qrv~l 154 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP---------ANLSGGQKQRVAI 154 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHH
Confidence 9999999998 4678999999987632 12233 44677788888877766655 4699999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+.+|++|||||||++||+.+.+.+.+.|+++.++ .++|+|+|||+++.+. .+|
T Consensus 155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvli~tH~~~~~~-~~d 211 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKK--NNLTVISITHDIDEAN-MAD 211 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHH-hCC
Confidence 99999999999999999999999999999999887532 2589999999999875 355
No 174
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-40 Score=347.24 Aligned_cols=195 Identities=29% Similarity=0.430 Sum_probs=167.2
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999974 46999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcccCcc-cccCHHHHhccCCCC-CC----CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 580 FVGQEPKL-FRMDISSNISYGCTQ-DI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 580 ~V~Qd~~L-F~gTI~eNI~~g~~~-~~----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
|++|++.+ +..|++||+.++... .. .++++.++++..++.++..+.| ..||||||||++|||||+
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY---------PQLSGGEQQRVQLARVLA 150 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHh
Confidence 99999988 788999999886321 11 2345666777777665444332 479999999999999999
Q ss_pred ------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 ------RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 ------r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++|+|||||++||+++...+.+.|+++.+. .++|+|+|||+++.+..-+|
T Consensus 151 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d 209 (258)
T PRK13548 151 QLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE--RGLAVIVVLHDLNLAARYAD 209 (258)
T ss_pred cccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhcC
Confidence 599999999999999999999999999987521 25899999999998876655
No 175
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-41 Score=347.09 Aligned_cols=199 Identities=33% Similarity=0.530 Sum_probs=165.4
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCC--CC
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKE--VD 570 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----~~G~I~idG~di~~--~~ 570 (709)
+.|+++||+++|++ .++++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||+++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999974 4699999999999999999999999999999999999863 69999999999875 35
Q ss_pred HHHHhcceEEEcccCcccccCHHHHhccCCC-CC-----CCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHH
Q 005203 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCT-QD-----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQ 644 (709)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQ 644 (709)
...+|+.|+||+|++.+|+.|+.|||.++.. .. ..++++.++++.+++.+.+..+ .+.. -..|||||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LS~G~~q 153 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDR---LKKS--ALGLSGGQQQ 153 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHH---HhcC--CCCCCHHHHH
Confidence 5678999999999999999999999987521 01 1234556666666665443211 1111 1479999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|||||+.+|++|+|||||++||+++...+.+.|+++.+ ++|+|+|||+++.+..-+|
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tiii~sH~~~~~~~~~d 213 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK----DYTIVIVTHNMQQASRISD 213 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEEeCHHHHHhhCC
Confidence 99999999999999999999999999999999999998853 4899999999998876665
No 176
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.4e-40 Score=337.75 Aligned_cols=191 Identities=32% Similarity=0.507 Sum_probs=164.7
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
++++||+++|+. .++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999962 467999999999999999999999999999999999999999999999987643 4688899
Q ss_pred EEcccCccccc-CHHHHhccCC-C----CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 580 FVGQEPKLFRM-DISSNISYGC-T----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~-~----~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
||+|++.+|.+ |+.||+.++. + +..+++++.++++..++.+...+.|. .||||||||++||||++
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE---------QLSGGQRQRVALARCLV 144 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc---------cCCHHHHHHHHHHHHHh
Confidence 99999999974 9999998641 1 01234567788888888877777664 59999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++++|||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.+..-+|
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tii~vsh~~~~~~~~~d 197 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSE--RQRTLLMVTHHLSDARAIAS 197 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhcC
Confidence 999999999999999999999999999987532 25899999999998776555
No 177
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.2e-40 Score=344.61 Aligned_cols=200 Identities=24% Similarity=0.424 Sum_probs=160.7
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHH-Hhcce
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGRI 578 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~-lR~~I 578 (709)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+... .|+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999974 46999999999999999999999999999999999999999999999999998877654 45679
Q ss_pred EEEcccCccccc-CHHHHhccCCCCCCCH-HHH---HHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHH
Q 005203 579 GFVGQEPKLFRM-DISSNISYGCTQDIKQ-QDI---EWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARA 651 (709)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~-e~i---~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARA 651 (709)
+|++|++.+|.+ |++||+.++...+... ..+ ........+++.+..+ |++..... ..||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999987 9999998863211000 000 0000111223344433 33333333 4799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++++|++|+||||||+||+++.+.+.+.|+++.+ ++|+|+|||+++.+..-+|
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~~d 210 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG----KHSVVVVEHDMEFVRSIAD 210 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc----CCEEEEEECCHHHHHHhCC
Confidence 9999999999999999999999999999998864 3899999999998876555
No 178
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-40 Score=328.80 Aligned_cols=166 Identities=42% Similarity=0.674 Sum_probs=152.3
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC--HHHHhcc
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD--IKWLRGR 577 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~--~~~lR~~ 577 (709)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++.+++ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 578999999974 46999999999999999999999999999999999999999999999999998876 5678899
Q ss_pred eEEEcccCcccc-cCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCC
Q 005203 578 IGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (709)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p 656 (709)
++|++|++.+|. .|++||+.++ ||||||||++|||||+++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 999999999986 5999999864 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 657 TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+++||||||++||+++...+.+.|+++.++ .++|+|+|||+++.+...+|
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d 169 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQ--LGITVVLVTHDLDEAARLAD 169 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcC
Confidence 999999999999999999999999987642 14899999999998876666
No 179
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=9e-41 Score=347.22 Aligned_cols=196 Identities=33% Similarity=0.512 Sum_probs=159.3
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC--------H
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD--------I 571 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~--------~ 571 (709)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999973 46999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcceEEEcccCcccc-cCHHHHhccCCC--CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHH
Q 005203 572 KWLRGRIGFVGQEPKLFR-MDISSNISYGCT--QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRI 646 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRI 646 (709)
..+|+.++||+|++.+|. .|++||+.++.. ...+.++..+. +++.++.+ |++..... ..||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 567889999999999985 799999986410 01222222111 22333332 33332222 47999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 647 aLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||+.+|++|||||||++||+++.+.+.+.|+++.+. ++|+|+|||+++.+..-+|
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~---~~tvi~~tH~~~~~~~~~d 212 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE---KRTMVIVTHEMSFARDVAD 212 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcC
Confidence 9999999999999999999999999999999999887642 5899999999998766555
No 180
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-41 Score=350.79 Aligned_cols=198 Identities=30% Similarity=0.457 Sum_probs=167.3
Q ss_pred CCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--C
Q 005203 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--V 569 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-----p~~G~I~idG~di~~--~ 569 (709)
...|+++||+|+|++ +++|+|+||+|++||.+||+||||||||||+++|+|+++ |++|+|.+||.++.. .
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 346999999999963 579999999999999999999999999999999999997 589999999999864 3
Q ss_pred CHHHHhcceEEEcccCcccccCHHHHhccCCCC-CC-----CHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChH
Q 005203 570 DIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQ-DI-----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGG 641 (709)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~-----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGG 641 (709)
+...+|+.|+||+|++.+|.+|++|||.++... .. .++++.++++..++.+++. +..+. ..||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHH
Confidence 456789999999999999999999999875210 11 1344566677777655442 22233 489999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 642 QkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||++|||||+++|++|+|||||++||+.+.+.+.+.|+++.+ +.|+|+|||+++.+..-+|
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiii~tH~~~~~~~~~d 230 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK----NYTIIIVTHNMQQAARASD 230 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHHHhcC
Confidence 99999999999999999999999999999999999999998864 4899999999998877666
No 181
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-40 Score=350.33 Aligned_cols=197 Identities=32% Similarity=0.503 Sum_probs=166.5
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999753 24699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcccCc--ccccCHHHHhccCCCC-CCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005203 579 GFVGQEPK--LFRMDISSNISYGCTQ-DIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (709)
Q Consensus 579 ~~V~Qd~~--LF~gTI~eNI~~g~~~-~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (709)
+||+|++. ++..|+++|+.++... ..+ ++++.++++..++.++..+.| ..||||||||++||||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~lara 156 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEP---------NALSGGQKQRVAIAGV 156 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCc---------ccCCHHHHHHHHHHHH
Confidence 99999984 5567899999876220 112 234556666666655443322 4799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++.+|++|||||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.+.. +|
T Consensus 157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~~~tiiivtH~~~~~~~-~d 210 (269)
T PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE--HNITIISITHDLSEAME-AD 210 (269)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCchHHhc-CC
Confidence 99999999999999999999999999999887532 25899999999998764 55
No 182
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.3e-40 Score=347.41 Aligned_cols=194 Identities=24% Similarity=0.395 Sum_probs=165.8
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999974 46999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEcccCc-ccccCHHHHhccCCCC---------CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005203 580 FVGQEPK-LFRMDISSNISYGCTQ---------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (709)
Q Consensus 580 ~V~Qd~~-LF~gTI~eNI~~g~~~---------~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (709)
|++|++. .+..|++||+.++... ..+++++.++++..++.+...+.| ..||||||||++||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la 149 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM---------STLSGGERQRVHVA 149 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHHHHHHHHH
Confidence 9999985 5678999999876310 012235566666666654433322 46999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 650 RAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 650 RALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++.+|++|||||||++||+++...+.+.|+++.+. +.|+|++||+++.+..-+|
T Consensus 150 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~---~~tiii~sH~~~~~~~~~d 205 (256)
T TIGR03873 150 RALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT---GVTVVAALHDLNLAASYCD 205 (256)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999988642 5899999999998866555
No 183
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=346.18 Aligned_cols=196 Identities=32% Similarity=0.497 Sum_probs=164.8
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----cceEEECCEeCCC--CCH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-----NGQILIDGFPIKE--VDI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~-----~G~I~idG~di~~--~~~ 571 (709)
.|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999973 46999999999999999999999999999999999999997 6999999999864 345
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCC-CCC-C----HHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDI-K----QQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (709)
..+|+.++||+|++.+|..|++|||.++.. ... . ++++.++++..++.+++. ..... ..||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 678999999999999999999999987621 011 1 233445555556554433 22222 48999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+++|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+...+|
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tilivsh~~~~~~~~~d 214 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQ----NYTIAIVTHNMQQAARASD 214 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHhhCC
Confidence 999999999999999999999999999999999999988853 4899999999999887666
No 184
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-40 Score=343.55 Aligned_cols=197 Identities=27% Similarity=0.471 Sum_probs=163.0
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHH-Hhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~-lR~~ 577 (709)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... +|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999973 46999999999999999999999999999999999999999999999999998877543 6788
Q ss_pred eEEEcccCcccc-cCHHHHhccCCC--CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHh
Q 005203 578 IGFVGQEPKLFR-MDISSNISYGCT--QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAI 652 (709)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL 652 (709)
|+||+|++.+|. .|+.||+.++.. ...+.++. ...+++.+..+ |++..... ..||||||||++|||||
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 999999999998 499999987521 01222211 12234455544 44443333 48999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+++|++|||||||++||+++...+.+.++++.+. ++|+|++||+++.+...+|
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~---g~tiii~sH~~~~~~~~~d 205 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS---GLGVLITDHNVRETLAVCE 205 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc---CCEEEEEEcCHHHHHHhcC
Confidence 9999999999999999999999999999887642 5899999999987766555
No 185
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-40 Score=352.67 Aligned_cols=198 Identities=30% Similarity=0.459 Sum_probs=161.8
Q ss_pred cEEEEEEEEEcCCCC--CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC----CHH
Q 005203 499 RIDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV----DIK 572 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~--~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~----~~~ 572 (709)
.|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997421 14699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcceEEEcccC--cccccCHHHHhccCCC-CCCCHH----HHHHHHHHHhhH-HHHHcCCCCcccccCCCCCChHHHH
Q 005203 573 WLRGRIGFVGQEP--KLFRMDISSNISYGCT-QDIKQQ----DIEWAAKQAYAH-DFIMSLPSGYETLVDDDLLSGGQKQ 644 (709)
Q Consensus 573 ~lR~~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~e----~i~~aa~~a~l~-d~I~~LP~GydT~vGe~~LSGGQkQ 644 (709)
..|+.|+||+|++ .+|..|+.|||.++.. ...+.+ ++.++++..++. ++.... -..|||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~~LSgGq~q 152 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKS---------PFELSGGQMR 152 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCC---------cccCCHHHHH
Confidence 6788999999998 6888999999987521 122222 233344444432 121111 1479999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|||||+.+|++|||||||++||+++.+.+.+.|+++.+. +.|+|+|||+++.+...+|
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~---g~tvlivsH~~~~~~~~~d 213 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA---GHTVILVTHNMDDVAEYAD 213 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999999999988642 6899999999999887776
No 186
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=8.4e-41 Score=333.40 Aligned_cols=176 Identities=34% Similarity=0.535 Sum_probs=150.1
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC--CCHHHHhcceEEEcccC--ccccc
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE--VDIKWLRGRIGFVGQEP--KLFRM 590 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~--~~~~~lR~~I~~V~Qd~--~LF~g 590 (709)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .....+|+.++||+|++ .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 579999999999999999999999999999999999999999999999999852 23456788999999998 58899
Q ss_pred CHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 005203 591 DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEAT 665 (709)
Q Consensus 591 TI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaT 665 (709)
|++|||.++.. ...+ ++++.++++..++.++....| ..||||||||++|||||+++|++|||||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT---------HCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999987521 0122 235566777777766555433 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhh
Q 005203 666 SALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 666 SaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
++||+++.+.+.+.|+++.++ ++|+|+|||+++.
T Consensus 156 ~~LD~~~~~~~~~~l~~~~~~---~~tili~sH~~~~ 189 (190)
T TIGR01166 156 AGLDPAGREQMLAILRRLRAE---GMTVVISTHDVDL 189 (190)
T ss_pred ccCCHHHHHHHHHHHHHHHHc---CCEEEEEeecccc
Confidence 999999999999999988643 5899999999874
No 187
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-40 Score=345.35 Aligned_cols=200 Identities=26% Similarity=0.418 Sum_probs=162.1
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHH-hcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL-RGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~l-R~~ 577 (709)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999973 479999999999999999999999999999999999999999999999999988776554 456
Q ss_pred eEEEcccCccccc-CHHHHhccCCCCC--------------CCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCCh
Q 005203 578 IGFVGQEPKLFRM-DISSNISYGCTQD--------------IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSG 640 (709)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~~~--------------~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSG 640 (709)
++||+|++.+|.+ |++|||.++.... ..+++ .+ ....+.+.++.+ |++..... ..|||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~--gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SE--ALDRAATWLERV--GLLEHANRQAGNLAY 156 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hH--HHHHHHHHHHhC--ChhhhhhCChhhCCH
Confidence 9999999999986 9999999752100 00000 00 111223344443 44444433 48999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 641 GQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 641 GQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||++|||||+.+|++|||||||++||+++.+.+.+.|.++.+. .++|+|+|||+++.+...+|
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--~~~tii~~sH~~~~~~~~~d 222 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE--HNVTVLLIEHDMKLVMGISD 222 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh--cCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999999999999887531 25899999999998876666
No 188
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=346.31 Aligned_cols=198 Identities=32% Similarity=0.472 Sum_probs=162.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--CCH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--VDI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-----p~~G~I~idG~di~~--~~~ 571 (709)
.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+|+|+|+++ |++|+|.+||+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999973 469999999999999999999999999999999999997 479999999999864 345
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCC-CCC-----CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDI-----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (709)
..+|+.++||+|++.+|++|++||+.++.. ... .++++.++++..++++... ..++.. -.+||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~--~~~LS~Gq~qr 155 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK---DNLDRN--AQAFSGGQQQR 155 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH---HHhccC--hhhCCHHHHHH
Confidence 678899999999999999999999987521 011 1234455555555532110 111111 14899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|||||+++|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+..-+|
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tiiiisH~~~~~~~~~d 214 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH----QYTFIMVTHNLQQAGRISD 214 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc----CCeEEEEECCHHHHHhhcC
Confidence 9999999999999999999999999999999999998854 3899999999998776555
No 189
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-40 Score=346.03 Aligned_cols=190 Identities=28% Similarity=0.454 Sum_probs=159.3
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 689999999974 4699999999999999999999999999999999999999999999999998642 34699
Q ss_pred EEcccCcccc-cCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 580 FVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.+...+.| .+||||||||++|||||+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYI---------WQLSGGQRQRVGIARALA 144 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999987 699999987521 0112 234555666666554443322 469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++|||||||++||+++...+.+.|+++.+. .++|+|+|||+++.+..-+|
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tviivsH~~~~~~~~~d 197 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE--TGKQVLLITHDIEEAVFMAT 197 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999887421 25899999999998877666
No 190
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=348.19 Aligned_cols=198 Identities=32% Similarity=0.468 Sum_probs=164.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC--C---CcceEEECCEeCCC--CCH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE--P---TNGQILIDGFPIKE--VDI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~--p---~~G~I~idG~di~~--~~~ 571 (709)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|.+||+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999973 469999999999999999999999999999999999997 3 58999999999864 345
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCC-CC-CCH----HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QD-IKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-~~~----e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (709)
..+|+.||||+|++.+|.+|++||+.++.. .. .++ +++.++++..++.+++... +++. -..||||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---l~~~--~~~LS~Gq~qr 163 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDR---LHTQ--ALSLSGGQQQR 163 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhh---hhCC--cccCCHHHHHH
Confidence 678899999999999999999999987621 01 122 3345556666665443211 1111 14799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|||||+++|++|+|||||++||+++...+.+.|+++.+ ++|+|+|||+++.+...+|
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tiiivtH~~~~~~~~~d 222 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE----KYTIVIVTHNMQQAARVSD 222 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEEcCHHHHHHhCC
Confidence 9999999999999999999999999999999999998864 4899999999998877666
No 191
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.8e-40 Score=358.06 Aligned_cols=199 Identities=26% Similarity=0.415 Sum_probs=162.2
Q ss_pred cEEEEEEEEEcCCCC----------CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC
Q 005203 499 RIDFVDVSFRYSSRE----------MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE 568 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~----------~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~ 568 (709)
-|+++||+++|+... ..++++|+||+|++||++||||+||||||||+++|+|+++|++|+|++||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999998
Q ss_pred CCHH---HHhcceEEEcccC--ccc-ccCHHHHhccCC---CCCCCHHH----HHHHHHHHhhHH-HHHcCCCCcccccC
Q 005203 569 VDIK---WLRGRIGFVGQEP--KLF-RMDISSNISYGC---TQDIKQQD----IEWAAKQAYAHD-FIMSLPSGYETLVD 634 (709)
Q Consensus 569 ~~~~---~lR~~I~~V~Qd~--~LF-~gTI~eNI~~g~---~~~~~~e~----i~~aa~~a~l~d-~I~~LP~GydT~vG 634 (709)
++.. .+|++|+||+|++ .|| ..||.|||.+.- ....+.++ +.++++.+++.+ ...+-|
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p-------- 159 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP-------- 159 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc--------
Confidence 8754 4678999999998 577 589999997521 00233333 344444444421 111111
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 635 DDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 635 e~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
..||||||||++|||||+.+|++||+|||||+||+.+.+.|.+.|+++.++ .+.|+|+|||+++.+..-+|
T Consensus 160 -~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~~~til~iTHdl~~~~~~~d 230 (331)
T PRK15079 160 -HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE--MGLSLIFIAHDLAVVKHISD 230 (331)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCC
Confidence 479999999999999999999999999999999999999999999988642 25899999999998876655
No 192
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=346.47 Aligned_cols=196 Identities=33% Similarity=0.516 Sum_probs=163.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC---CCC--CcceEEECCEeCCCC--CH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL---YEP--TNGQILIDGFPIKEV--DI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl---~~p--~~G~I~idG~di~~~--~~ 571 (709)
.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|+|+ ++| ++|+|.+||+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999974 4699999999999999999999999999999999997 454 589999999998754 34
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCC-CC-----CCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QD-----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (709)
..+|+.|+||+|++.+|.+|+.|||.++.. .. ..++++.++++..++.+++. +.... ..||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 678899999999999999999999987521 01 12234556666666544432 22223 47999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+...+|
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiiivtH~~~~~~~~~d 213 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK----DYTIVIVTHNMQQAARVSD 213 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHhhCC
Confidence 999999999999999999999999999999999999998854 4899999999999877666
No 193
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-40 Score=349.25 Aligned_cols=198 Identities=33% Similarity=0.503 Sum_probs=167.4
Q ss_pred CCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCC--C
Q 005203 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKE--V 569 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----~~G~I~idG~di~~--~ 569 (709)
.+.|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999973 4699999999999999999999999999999999999984 89999999999864 3
Q ss_pred CHHHHhcceEEEcccCcccccCHHHHhccCCC-CCC-----CHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChH
Q 005203 570 DIKWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDI-----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGG 641 (709)
Q Consensus 570 ~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGG 641 (709)
+...+|+.++||+|++.+|++|++|||.++.. ... .++++.++++.+++.+++.. ..+. ..||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHH
Confidence 45678999999999999999999999987521 011 12446677777776654432 2232 479999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 642 QkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||++|||||+++|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+...+|
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~----~~tiiivtH~~~~~~~~~d 235 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS----KYTIVIVTHNMQQAARVSD 235 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----CCeEEEEeCCHHHHHhhCC
Confidence 99999999999999999999999999999999999999998864 3899999999998876665
No 194
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-40 Score=347.67 Aligned_cols=197 Identities=25% Similarity=0.372 Sum_probs=170.6
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
..|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 36899999999974 469999999999999999999999999999999999999999999999999988888888899
Q ss_pred eEEEcccCcccc-cCHHHHhccCCCC---------CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005203 578 IGFVGQEPKLFR-MDISSNISYGCTQ---------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (709)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~~---------~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (709)
|+||+|++.+|. .|++||+.++... +.+++++.++++..++.++..+.| ..||||||||++
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrv~ 153 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV---------DTLSGGQRQRAW 153 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCChHHHHHHH
Confidence 999999999875 6999999875210 112346677788777776654432 469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||++++|++|+|||||++||+++...+.+.|+++.+. .+.|+|++||+++.+..-+|
T Consensus 154 laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~--~~~tiii~tH~~~~~~~~~d 212 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE--KGYTLAAVLHDLNQACRYAS 212 (265)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999999987542 25899999999998876665
No 195
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.8e-40 Score=354.74 Aligned_cols=194 Identities=32% Similarity=0.470 Sum_probs=161.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.|
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999974 4699999999999999999999999999999999999999999999999998754 35678999
Q ss_pred EEEcccCcccc-cCHHHHhccCCC-CCCCHHHHH----HHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 579 GFVGQEPKLFR-MDISSNISYGCT-QDIKQQDIE----WAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~~e~i~----~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
|||+|++.+|. .|++||+.++.. ...+.++.. ++++..+ ++..+++.+ ..||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------l~~~~~~~~--~~LSgG~~qrv~la~al 150 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESKADVRV--ALLSGGMKRRLTLARAL 150 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-------ChhHhcCch--hhCCHHHHHHHHHHHHH
Confidence 99999999984 799999985321 122333332 2333333 333334433 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+++|++|||||||++||+++...+.+.|+++.+. |+|+|++||+++.+..-||
T Consensus 151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~---g~til~~sH~~~~~~~~~d 203 (303)
T TIGR01288 151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLAR---GKTILLTTHFMEEAERLCD 203 (303)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC---CCEEEEECCCHHHHHHhCC
Confidence 9999999999999999999999999999988642 6899999999998877666
No 196
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=345.49 Aligned_cols=196 Identities=35% Similarity=0.499 Sum_probs=163.1
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC--CC---CcceEEECCEeCCCC--CH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY--EP---TNGQILIDGFPIKEV--DI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~--~p---~~G~I~idG~di~~~--~~ 571 (709)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|++ +| ++|+|.+||+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999973 46999999999999999999999999999999999995 46 499999999998643 44
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCC--C----CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT--Q----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~----~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (709)
..+|+.|+||+|++.+|+.|++||+.++.. . +..++++.++++.+++.+++. +..+. ..||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 578899999999999999999999986521 0 111244555666666544332 12222 47999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+++|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+..-+|
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~~d 215 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD----DYTMLLVTRSMQQASRISD 215 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh----CCeEEEEECCHHHHHHhCC
Confidence 999999999999999999999999999999999999998754 3899999999998877666
No 197
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.5e-40 Score=347.20 Aligned_cols=197 Identities=32% Similarity=0.426 Sum_probs=159.9
Q ss_pred EEEEEEEEEcCCC------CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH-
Q 005203 500 IDFVDVSFRYSSR------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK- 572 (709)
Q Consensus 500 I~~~nVsF~Y~~~------~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~- 572 (709)
|+++||+|+|++. .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 135799999999999999999999999999999999999999999999999999877654
Q ss_pred --HHhcceEEEcccCc--cc-ccCHHHHhccCCC------CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCC
Q 005203 573 --WLRGRIGFVGQEPK--LF-RMDISSNISYGCT------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLS 639 (709)
Q Consensus 573 --~lR~~I~~V~Qd~~--LF-~gTI~eNI~~g~~------~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LS 639 (709)
.+|+.|+||+|++. ++ ..|++|||.+... .+..++++.++++..++.+ ..... ..||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 36888999999973 44 4799999965311 0112234445555544421 11122 4799
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 640 GGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||||++|||||+.+|++|||||||++||+++++.+.+.|+++.+. .++|+|+|||+++.+..-+|
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiiivsH~~~~~~~~~d 219 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA--FGTAYLFITHDLRLVQSFCQ 219 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHHhc
Confidence 99999999999999999999999999999999999999999887542 25899999999998876555
No 198
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-40 Score=342.23 Aligned_cols=193 Identities=30% Similarity=0.453 Sum_probs=167.0
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+|+|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 478999999974 469999999999999999999999999999999999999999999999999987654 368899
Q ss_pred EEcccCccccc-CHHHHhccCCC-----CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 580 FVGQEPKLFRM-DISSNISYGCT-----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~-----~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
||+|++.+|.+ |+.||+.++.. ....++++.++++..++.+++.+.| ..||||||||++|||||+
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrl~laral~ 146 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP---------SQLSGGQQQRVAIARALV 146 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHHHh
Confidence 99999999975 99999986421 0112456677777778877776665 469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++|||||||++||+.+.+.+.+.|+++.+. .++|+|++||+++.+..-+|
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~--~~~tiii~sh~~~~~~~~~d 199 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE--LGITFVFVTHDQEEALTMSD 199 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcC
Confidence 999999999999999999999999999987641 25899999999998876666
No 199
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-40 Score=349.14 Aligned_cols=195 Identities=31% Similarity=0.500 Sum_probs=163.2
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC--CCHHHHhcc
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE--VDIKWLRGR 577 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~--~~~~~lR~~ 577 (709)
|+++||+++|++. .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 6899999999742 469999999999999999999999999999999999999999999999999852 234568899
Q ss_pred eEEEcccC--cccccCHHHHhccCCCC-CCCH----HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 578 IGFVGQEP--KLFRMDISSNISYGCTQ-DIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 578 I~~V~Qd~--~LF~gTI~eNI~~g~~~-~~~~----e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
|+||+|++ .+|..|+.|||.++... ..+. +++.++++..++.++....| ..|||||+||++|||
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LS~Gq~qrv~lar 150 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPP---------HHLSGGQKKRVAIAG 150 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCCh---------hhCCHHHHHHHHHHH
Confidence 99999997 58899999999875210 1222 34555666666544322221 369999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+++|++|||||||++||+++...+.+.|+++.+. ++|+|+|||+++.+..-+|
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~---~~til~vtH~~~~~~~~~d 205 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE---GITIIISTHDVDLVPVYAD 205 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC---CCEEEEEecCHHHHHHhCC
Confidence 999999999999999999999999999999988642 5899999999998876665
No 200
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.8e-40 Score=361.64 Aligned_cols=197 Identities=29% Similarity=0.452 Sum_probs=168.6
Q ss_pred CCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc--ceEEECCEeCCCCCHHHH
Q 005203 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN--GQILIDGFPIKEVDIKWL 574 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~--G~I~idG~di~~~~~~~l 574 (709)
.+.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+||.++.+.+. .
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~ 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--H 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--H
Confidence 357999999999974 469999999999999999999999999999999999999999 999999999987654 4
Q ss_pred hcceEEEcccCccccc-CHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 575 RGRIGFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 575 R~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
++.||||+|++.||.. |++|||.|+.. ...+ ++++.++++..++.++..+.|. .||||||||++|
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~---------~LSgGq~QRvaL 148 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA---------QLSGGMQQRIAI 148 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChh---------hCCHHHHHHHHH
Confidence 6789999999999965 99999998632 1122 2456677777777776666553 699999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+++|++|+||||||+||+.+...+.+.|+++.++ ..+.|+|+|||+++.+..-+|
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~-~~g~til~vTHd~~ea~~l~d 207 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEE-LPELTILCVTHDQDDALTLAD 207 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999887642 115899999999998766555
No 201
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-40 Score=344.22 Aligned_cols=199 Identities=29% Similarity=0.472 Sum_probs=165.1
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC--C---CcceEEECCEeCCCC--C
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE--P---TNGQILIDGFPIKEV--D 570 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~--p---~~G~I~idG~di~~~--~ 570 (709)
+.|+++|++++|++ .++|+|+||+|++||.+||+||||||||||+++|+|+++ | ++|+|.+||.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 46999999999973 469999999999999999999999999999999999986 4 689999999998643 4
Q ss_pred HHHHhcceEEEcccCcccc-cCHHHHhccCCC--CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHH
Q 005203 571 IKWLRGRIGFVGQEPKLFR-MDISSNISYGCT--QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQK 643 (709)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQk 643 (709)
...+|+.|+||+|++.+|. .|++|||.++.. ...+ ++++.++++..++.+++.... ++ .-..||||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~--~~~~LS~G~~ 154 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL---KS--NAMELSGGQQ 154 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHh---hC--CcCcCCHHHH
Confidence 5578999999999999998 699999986421 0111 244566666767655443211 11 1247999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+...+|
T Consensus 155 qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~----~~tiiivsH~~~~~~~~~d 215 (252)
T PRK14256 155 QRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE----KYTIIIVTHNMQQAARVSD 215 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh----CCcEEEEECCHHHHHhhCC
Confidence 999999999999999999999999999999999999999864 3799999999998877666
No 202
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2e-40 Score=354.67 Aligned_cols=194 Identities=30% Similarity=0.441 Sum_probs=163.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999973 46999999999999999999999999999999999999999999999999997654 4678999
Q ss_pred EEEcccCcccc-cCHHHHhccCCC-CCCCHHH----HHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 579 GFVGQEPKLFR-MDISSNISYGCT-QDIKQQD----IEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~~e~----i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
|||||++.+|. .|++||+.++.. ...+.++ +.++++..+ |+...++.+ .+||||||||++|||||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~--~~LS~G~~qrl~la~aL 153 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAK-------LENKADAKV--GELSGGMKRRLTLARAL 153 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CchHhcCch--hhCCHHHHHHHHHHHHH
Confidence 99999999985 799999986422 1223232 223333333 334445554 37999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+.+|++|||||||++||+.+.+.+.+.|+++.++ |+|+|++||.++.+..-||
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~---g~till~sH~l~e~~~~~d 206 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR---GKTILLTTHFMEEAERLCD 206 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC---CCEEEEECCCHHHHHHhCC
Confidence 9999999999999999999999999999998643 6899999999999887776
No 203
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.9e-37 Score=338.71 Aligned_cols=468 Identities=18% Similarity=0.207 Sum_probs=306.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---chhhccCCHhHHH----HHHHHH
Q 005203 215 SEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQD---ISFFDSETVGDLT----SRLGSD 287 (709)
Q Consensus 215 ~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp---~~~fe~~~~Gdi~----sRl~sd 287 (709)
.|...+.......+.++.+.+.+..+..+...-+ ..++|.++-.++.++- ..||.-.+.++.+ .|+++|
T Consensus 116 kd~~~F~~~~~~~~~~~~~~s~~~a~~ky~~~~L----~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqD 191 (659)
T KOG0060|consen 116 KDAELFKRLLFKYVLLIPGISLLNALLKFTTNEL----YLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQD 191 (659)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHH
Confidence 3444444333333333333344444444444433 4444544444444332 2344333443332 688889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 288 CQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGL-ML-IYGLYQKKAAKLVQEITASANEVAQE 365 (709)
Q Consensus 288 i~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i-~~-~~~~~~~~~~~~~~~~~a~~~~~~~E 365 (709)
++...+.+......++...+..+....-++.+..+++.+.+..-.+...+ .. +.++..+...++.+. .+...-.-++
T Consensus 192 v~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qekl-EGdfRy~h~r 270 (659)
T KOG0060|consen 192 VEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKL-EGDFRYKHSR 270 (659)
T ss_pred HHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHh-hcchhhheee
Confidence 88877776655555555554445555555666666666666654443333 22 333444444433332 3455555667
Q ss_pred HHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCcCHHHHH
Q 005203 366 TFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMR----GNITAEQLT 441 (709)
Q Consensus 366 ~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~vl~~ga~lV~~----G~lt~G~l~ 441 (709)
...+.++|--|+.++.|..+..+..+.+.+.....-.+.-++..+.+++-.+..++.+++-+.-+.. +.+|...+.
T Consensus 271 lr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~ 350 (659)
T KOG0060|consen 271 LRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELS 350 (659)
T ss_pred eeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHH
Confidence 7888999999999999888888877777765444332333333333333333333322222222333 356767766
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------Ccccc-------cc-ccccCC
Q 005203 442 KFILYSE----WLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPS-------------DQFMS-------KG-KKLQRL 496 (709)
Q Consensus 442 af~~y~~----~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e-------------~~~~~-------~~-~~~~~~ 496 (709)
..+.+.. .+.+....++.....+....+...|+-++.+.-.+ +..+. .+ ....+.
T Consensus 351 ~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~ 430 (659)
T KOG0060|consen 351 GLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPA 430 (659)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccc
Confidence 5544322 23344444555555666666677787776653110 00000 00 001112
Q ss_pred CCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhc
Q 005203 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG 576 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~ 576 (709)
...|+|++|++.-|++ .+-+.+|+||+|+.|+.+-|.||||||||+|++.|.||++-.+|.+.--...-. +
T Consensus 431 Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~--------~ 501 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP--------K 501 (659)
T ss_pred cceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC--------C
Confidence 3469999999999875 467888899999999999999999999999999999999999999875322211 4
Q ss_pred ceEEEcccCcccccCHHHHhccCC------CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC---CCCChHHHHHHH
Q 005203 577 RIGFVGQEPKLFRMDISSNISYGC------TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD---DLLSGGQKQRIA 647 (709)
Q Consensus 577 ~I~~V~Qd~~LF~gTI~eNI~~g~------~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe---~~LSGGQkQRIa 647 (709)
.+=||||.|+.=.||+||-+-|-+ .+.++||+|.+.++.+++.+-.+. -.|+|+.+.- +.||+||+||+|
T Consensus 502 ~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa 580 (659)
T KOG0060|consen 502 DLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLA 580 (659)
T ss_pred ceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHH
Confidence 588999999999999999998852 236799999999999999776655 6899988764 589999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
.||-+|.+|++-||||+|||+|.+.|.++.+.++++ |.|.|-|.||.|..
T Consensus 581 ~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~------giT~iSVgHRkSL~ 630 (659)
T KOG0060|consen 581 FARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM------GITFISVGHRKSLW 630 (659)
T ss_pred HHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc------CCeEEEeccHHHHH
Confidence 999999999999999999999999999999999886 59999999999854
No 204
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=346.95 Aligned_cols=199 Identities=32% Similarity=0.472 Sum_probs=167.9
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCC--CC
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKE--VD 570 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----~~G~I~idG~di~~--~~ 570 (709)
+.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.+||+++.+ .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 46999999999973 4699999999999999999999999999999999999986 48999999999864 44
Q ss_pred HHHHhcceEEEcccCcccccCHHHHhccCCC-----CCCC-HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHH
Q 005203 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCT-----QDIK-QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQ 644 (709)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-----~~~~-~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQ 644 (709)
...+|+.|+||+|++.+|+.|++||+.++.. ++.+ ++++.++++.+++.+++... .++. -..|||||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LS~G~~q 157 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---LNKS--ALGLSGGQQQ 157 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---hcCC--cccCCHHHHH
Confidence 5678899999999999999999999987521 0111 24566777777776554422 1111 1479999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|||||+++|++|+|||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..-+|
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiii~tH~~~~i~~~~d 217 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS----ELTIAIVTHNMQQATRVSD 217 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhcC
Confidence 99999999999999999999999999999999999998864 3899999999999887776
No 205
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-40 Score=346.78 Aligned_cols=199 Identities=30% Similarity=0.437 Sum_probs=167.6
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--CCH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--VDI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-----p~~G~I~idG~di~~--~~~ 571 (709)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999973 469999999999999999999999999999999999986 489999999999853 456
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCCC-C---CCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCTQ-D---IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~---~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (709)
..+|+.|+||+|++.+|+.|+.|||.++... . ..++++.++++.+++.+++... .+.. ..+||||||||++
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LSgGq~qrv~ 161 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK---LKQS--GLSLSGGQQQRLC 161 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH---hcCC--cccCCHHHHHHHH
Confidence 6789999999999999999999999976320 1 1234556677777776655421 1111 1479999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcCC
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFDC 709 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~~ 709 (709)
|||||+++|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+...+|.
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tvi~vtH~~~~~~~~~d~ 219 (264)
T PRK14243 162 IARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE----QYTIIIVTHNMQQAARVSDM 219 (264)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHHHhCCE
Confidence 99999999999999999999999999999999998864 37999999999999887773
No 206
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-40 Score=362.28 Aligned_cols=195 Identities=26% Similarity=0.437 Sum_probs=166.4
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+.+. .|+.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999973 469999999999999999999999999999999999999999999999999987653 5789
Q ss_pred eEEEcccCccccc-CHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005203 578 IGFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (709)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (709)
||||+|++.||.. |+.|||+|+.. ...+ .+++.++++..++.++..+.|. .||||||||++||||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~---------~LSgGq~QRVaLARA 163 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH---------QLSGGQRQRVALARS 163 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh---------hCCHHHHHHHHHHHH
Confidence 9999999999965 99999998732 1122 2455666677676665555443 699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+++|++|+||||||+||..+...+.+.|+++.++ .+.|+|+|||+++.+..-+|
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~laD 218 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER--VGVTCVMVTHDQEEAMTMAG 218 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCC
Confidence 99999999999999999999999999888877543 25899999999998766555
No 207
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-40 Score=323.63 Aligned_cols=162 Identities=59% Similarity=0.891 Sum_probs=151.9
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++|++++|++. +.++++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999854 247999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEE
Q 005203 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTIL 659 (709)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~IL 659 (709)
|++|++.+|++|+.||+ ||||||||++|||||+++|++|
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 660 ILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 660 ILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||++||+++...+.+.|+++.+ ++|+|++||+++.+.. +|
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~~----~~tii~~sh~~~~~~~-~d 162 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALAK----GKTVIVIAHRLSTIRD-AD 162 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhcC----CCEEEEEecCHHHHHh-CC
Confidence 99999999999999999999998753 4899999999998876 66
No 208
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.4e-40 Score=340.76 Aligned_cols=199 Identities=29% Similarity=0.430 Sum_probs=157.4
Q ss_pred EEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCcceEEECCEeCCCCCHHHHh
Q 005203 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE---PTNGQILIDGFPIKEVDIKWLR 575 (709)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~---p~~G~I~idG~di~~~~~~~lR 575 (709)
++|+||+|+|++.+ .+++++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999998642 3689999999999999999999999999999999999999 99999999999875 35788
Q ss_pred cceEEEcccCccccc-CHHHHhccCCCCCCCHHHHHHHHHHHhhHH-HHHcCCCCcccccCC---CCCChHHHHHHHHHH
Q 005203 576 GRIGFVGQEPKLFRM-DISSNISYGCTQDIKQQDIEWAAKQAYAHD-FIMSLPSGYETLVDD---DLLSGGQKQRIAIAR 650 (709)
Q Consensus 576 ~~I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~~aa~~a~l~d-~I~~LP~GydT~vGe---~~LSGGQkQRIaLAR 650 (709)
+.|+|++|++.+|.+ |++||+.++.. ....+...+..+...+++ .+. ....+.+.+ ..||||||||++|||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~lar 156 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAI-LRLPRKSSDAIRKKRVEDVLLR---DLALTRIGGNLVKGISGGERRRVSIAV 156 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHH-hhcccccchHHHHHHHHHHHHH---hhcchhhhcccccCcCHHHHHHHHHHH
Confidence 999999999999987 99999987521 000000001111111122 122 212222322 489999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecCh-hhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRL-ISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRl-sti~~~~~ 708 (709)
||+++|++|+|||||++||+.+.+.+.+.|+++.+. ++|+|++||++ ..+..-+|
T Consensus 157 al~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~---~~tiii~sh~~~~~~~~~~d 212 (226)
T cd03234 157 QLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR---NRIVILTIHQPRSDLFRLFD 212 (226)
T ss_pred HHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC---CCEEEEEecCCCHHHHHhCC
Confidence 999999999999999999999999999999887542 58999999998 46766666
No 209
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-40 Score=345.68 Aligned_cols=196 Identities=28% Similarity=0.469 Sum_probs=162.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--CCH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--VDI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-----p~~G~I~idG~di~~--~~~ 571 (709)
-|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4899999999973 469999999999999999999999999999999999875 799999999999865 345
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCC--CC----CCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT--QD----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~~----~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (709)
..+|+.|+||+|++.+|++|+.||+.++.. .. ..++++.++++..++.+.+. ...+. .+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 578899999999999999999999987521 01 11234455555555432221 11122 47999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+++|++|||||||++||+++...+.+.|+++.+ ++|+|++||+++.+...+|
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiii~tH~~~~~~~~~d 231 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE----EYSIIIVTHNMQQALRVSD 231 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc----CCEEEEEEeCHHHHHHhCC
Confidence 999999999999999999999999999999999999998864 3799999999998876666
No 210
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=344.36 Aligned_cols=196 Identities=30% Similarity=0.471 Sum_probs=164.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCCC--CH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKEV--DI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----~~G~I~idG~di~~~--~~ 571 (709)
-|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999973 4799999999999999999999999999999999999984 899999999998653 34
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCC-CC-----CCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QD-----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (709)
..+|+.++|++|++.+|..|++||+.++.. .. ..++++.++++..++++.+.. ..+. ..||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHH
Confidence 567889999999999999999999987521 01 123345666777676554422 1222 47999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+++|++|+|||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+..-+|
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tili~sH~~~~~~~~~d 213 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE----NYTIVIVTHNIGQAIRIAD 213 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc----CcEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999999999998864 4899999999998776665
No 211
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-40 Score=343.56 Aligned_cols=198 Identities=31% Similarity=0.516 Sum_probs=165.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCC-CCCHH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIK-EVDIK 572 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----~~G~I~idG~di~-~~~~~ 572 (709)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999973 4699999999999999999999999999999999999996 5999999999985 45667
Q ss_pred HHhcceEEEcccCcccccCHHHHhccCCC-CCCC-----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005203 573 WLRGRIGFVGQEPKLFRMDISSNISYGCT-QDIK-----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (709)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~~-----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (709)
.+|+.++||+|++.+|.+|++|||.++.. ...+ ++++.++++.+++++++.. .++.. -..||||||||+
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~--~~~LS~G~~qrv 154 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKD---RLKSH--AFGLSGGQQQRL 154 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhH---HhhcC--cccCCHHHHHHH
Confidence 88999999999999999999999987521 0111 2345556666666554421 11111 147999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 647 aLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||+++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+..-+|
T Consensus 155 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sh~~~~~~~~~d 212 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK----NYTIVIVTHSMQQARRISD 212 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEecCHHHHHHhCC
Confidence 999999999999999999999999999999999999864 3899999999998776665
No 212
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-40 Score=337.27 Aligned_cols=191 Identities=32% Similarity=0.530 Sum_probs=165.1
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ .+ .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 689999999973 22 39999999999999999999999999999999999999999999999887654 367899
Q ss_pred EEcccCccccc-CHHHHhccCCCC-----CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 580 FVGQEPKLFRM-DISSNISYGCTQ-----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~~-----~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
||+|++.+|.+ |+.|||.++... ..+++++.++++..++.+.+.+.|. .||||||||++||||++
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~G~~qrv~laral~ 145 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG---------QLSGGQRQRVALARCLV 145 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcc---------cCCHHHHHHHHHHHHHh
Confidence 99999999985 999999874211 1235678888999998888777663 59999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++|||||||++||+++.+.+.+.|+++.+. .++|+|+|||+++.+...+|
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d 198 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQE--RQLTLLMVSHSLEDAARIAP 198 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCC
Confidence 999999999999999999999999999887531 25899999999998776555
No 213
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.8e-40 Score=341.79 Aligned_cols=196 Identities=26% Similarity=0.312 Sum_probs=157.7
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCcceEEECCEeCCCCCHHHH-hc
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL--YEPTNGQILIDGFPIKEVDIKWL-RG 576 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl--~~p~~G~I~idG~di~~~~~~~l-R~ 576 (709)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.+||.++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999973 4699999999999999999999999999999999999 47999999999999988877654 45
Q ss_pred ceEEEcccCccccc-CHHHHhccCCCC--C------CC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHH
Q 005203 577 RIGFVGQEPKLFRM-DISSNISYGCTQ--D------IK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQK 643 (709)
Q Consensus 577 ~I~~V~Qd~~LF~g-TI~eNI~~g~~~--~------~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQk 643 (709)
.++||+|++.+|.+ |++||+.+.... . .+ ++++.++++..++.+.. .+..++ ..||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~-~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN-EGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc-cCcCHHHH
Confidence 59999999999976 799999753110 0 11 12333444444432111 121111 24999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhh-cC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALS-FD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~-~~ 708 (709)
||++|||||+++|++|||||||++||+++.+.+.+.|+++.+. ++|+|+|||+++.+... +|
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~---~~tvi~vsH~~~~~~~~~~d 213 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREP---DRSFLIITHYQRLLNYIKPD 213 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC---CcEEEEEEecHHHHHhhcCC
Confidence 9999999999999999999999999999999999999988642 58999999999988765 55
No 214
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-40 Score=346.04 Aligned_cols=195 Identities=31% Similarity=0.481 Sum_probs=162.0
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCCCC--HH
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKEVD--IK 572 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-----p~~G~I~idG~di~~~~--~~ 572 (709)
-+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.+.+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999973 479999999999999999999999999999999999986 47999999999987543 34
Q ss_pred HHhcceEEEcccCcccccCHHHHhccCCC-CC------CCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHH
Q 005203 573 WLRGRIGFVGQEPKLFRMDISSNISYGCT-QD------IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (709)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~------~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (709)
.+|+.++||+|++.+|.+|+.|||.++.. .+ ..++++.++++..++.+++. +.++. ..||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 67889999999999999999999987521 01 11234556666666654322 12222 47999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..-+|
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tiiiisH~~~~~~~~~d 216 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK----NFTIIVVTHSMKQAKKVSD 216 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHhhcC
Confidence 999999999999999999999999999999999999998853 4899999999998876555
No 215
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-40 Score=344.79 Aligned_cols=198 Identities=31% Similarity=0.475 Sum_probs=163.5
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCCC--CH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKEV--DI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----~~G~I~idG~di~~~--~~ 571 (709)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999973 4699999999999999999999999999999999999985 799999999998653 34
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCC-CCCCH----HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~~~----e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (709)
..+|+.++||+|++.+|..|++||+.++.. ...+. +++.++++.+++.+++. ..+++.+ ..||||||||+
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~~--~~LSgG~~qrv 163 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLKSPA--LSLSGGQQQRL 163 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhcCCh--hhCCHHHHHHH
Confidence 567889999999999999999999987521 01222 23455666555533221 1122221 47999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 647 aLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||+++|++|+|||||++||+++...+.+.|+++.+ ++|+|+|||+++.+..-+|
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~----~~tiiivsH~~~~~~~~~d 221 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK----DYTIVIVTHNMQQAARISD 221 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh----CCEEEEEECCHHHHHHhCC
Confidence 999999999999999999999999999999999998853 4899999999998876666
No 216
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-40 Score=342.90 Aligned_cols=196 Identities=31% Similarity=0.466 Sum_probs=163.8
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCCC--CH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKEV--DI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----~~G~I~idG~di~~~--~~ 571 (709)
-|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999973 4699999999999999999999999999999999999863 489999999999876 45
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCCC-CC-C----HHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCTQ-DI-K----QQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-~~-~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (709)
...|+.|+||+|++.+|++|++|||.++... +. + ++++.++++..++.+++. +..+. ..||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHH
Confidence 6778899999999999999999999976210 11 1 234555555555543332 22333 48999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+.+|++|+|||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+...+|
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~----~~tvii~sh~~~~~~~~~d 216 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK----EYTVIIVTHNMQQAARVSD 216 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh----CceEEEEEcCHHHHHhhCC
Confidence 999999999999999999999999999999999999998864 3899999999998876665
No 217
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.7e-40 Score=332.64 Aligned_cols=188 Identities=26% Similarity=0.384 Sum_probs=161.8
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .. +|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence 789999999974 469999999999999999999999999999999999999999999999998753 22 888999
Q ss_pred EEcccCccc-ccCHHHHhccCCC-CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCC
Q 005203 580 FVGQEPKLF-RMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657 (709)
Q Consensus 580 ~V~Qd~~LF-~gTI~eNI~~g~~-~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ 657 (709)
|++|++.++ +.|++||+.+... ...+++++.++++..++.++.. .|. ..||||||||++|||||+++|+
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~--------~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-LPF--------GYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-CCh--------hhcCHHHHHHHHHHHHHhcCCC
Confidence 999988775 6899999987421 1234567888888888876443 222 3699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 658 ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
+|||||||++||+++.+.+.+.|+++.++ ++|+|+|||+++.+..
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~---~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLAQ---GGIVIAATHIPLGLPG 192 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCchhhcc
Confidence 99999999999999999999999887543 6899999999987654
No 218
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=5.8e-40 Score=338.82 Aligned_cols=193 Identities=33% Similarity=0.513 Sum_probs=160.8
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999974 469999999999999999999999999999999999999999999999999976553 478899
Q ss_pred EEcccCccccc-CHHHHhccCCCC-CCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 580 FVGQEPKLFRM-DISSNISYGCTQ-DIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~~-~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
||+|++.+|.+ |++||+.++... ..+ ++++.++++..++.++..+.| .+|||||+||++|||||+
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP---------NQLSGGQRQRVALARALA 146 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 99999999975 999999875320 111 233444445444444333322 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++++|||||++||+++++.+.+.|+++.++ .++|+|++||+++.+..-+|
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~--~~~tvli~sH~~~~~~~~~d 199 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE--VHVTTVFVTHDQEEAMEVAD 199 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhcC
Confidence 999999999999999999999999999887531 25899999999998766565
No 219
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.7e-40 Score=333.77 Aligned_cols=192 Identities=26% Similarity=0.328 Sum_probs=159.5
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 4899999999974 4699999999999999999999999999999999999999999999999998752 346689
Q ss_pred EEEcccCccccc-CHHHHhccCCC--CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccC
Q 005203 579 GFVGQEPKLFRM-DISSNISYGCT--QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~--~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~ 655 (709)
+|++|++.+|.+ |++||+.++.. ....++++.++++..++.+. +++.+ ..||||||||++||||++++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~--~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-------EDTLV--RQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-------ccCCh--hhCCHHHHHHHHHHHHHhcC
Confidence 999999999987 99999976521 01123344455555444322 23322 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 656 PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|+|||||++||+++.+.+.+.|+++.++ ++|+|++||+++.+..-+|
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~---~~tiii~sH~~~~~~~~~~ 205 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNRMISAHLRG---GGAALVTTHGAYAAPPVRT 205 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhC---CCEEEEEecChhhhhhhcc
Confidence 9999999999999999999999999887543 5899999999998765554
No 220
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-40 Score=341.89 Aligned_cols=198 Identities=32% Similarity=0.535 Sum_probs=165.1
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCCC--CH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKEV--DI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----~~G~I~idG~di~~~--~~ 571 (709)
.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999973 4699999999999999999999999999999999999986 799999999998653 34
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCC-CCC-C----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDI-K----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (709)
..+|+.++||+|++.+|..|++||+.++.. ... + ++++.++++.+++.+.+.... +. .-..||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~--~~~~LS~G~~qr 155 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDL---KK--SALKLSGGQQQR 155 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHh---hC--CcccCCHHHHHH
Confidence 577899999999999999999999987521 011 1 244566777776644333211 11 114799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++||||++++|++||||||||+||+++...+.+.|+++.+ ++|+|+|||+++.+...+|
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~----~~tiiivsH~~~~~~~~~d 214 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK----EYTIVIVTHNMQQASRVSD 214 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----CCeEEEEEcCHHHHHHhcC
Confidence 9999999999999999999999999999999999998864 3899999999998877666
No 221
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-40 Score=362.61 Aligned_cols=182 Identities=37% Similarity=0.538 Sum_probs=156.5
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHH----hcceEEEcccCcccc-c
Q 005203 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL----RGRIGFVGQEPKLFR-M 590 (709)
Q Consensus 516 ~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~l----R~~I~~V~Qd~~LF~-g 590 (709)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.|+.+++...+ |++|+||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 38999999999999999999999999999999999999999999999999998876554 468999999999996 5
Q ss_pred CHHHHhccCCC-----CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 005203 591 DISSNISYGCT-----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEAT 665 (709)
Q Consensus 591 TI~eNI~~g~~-----~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaT 665 (709)
|++|||.++.. ....++++.++++..++.++..+.| ..||||||||++|||||+.+|++|||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~---------~~LSgGq~QRv~LArAL~~~P~iLLLDEPt 192 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP---------DELSGGMRQRVGLARALAINPDILLMDEAF 192 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 99999997521 0112355667777777776666555 369999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 666 SALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 666 SaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+||+.+.+.+.+.|+++.+. .++|+|+|||+++.+..-+|
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~--~g~TIIivTHd~~~~~~~~D 233 (400)
T PRK10070 193 SALDPLIRTEMQDELVKLQAK--HQRTIVFISHDLDEAMRIGD 233 (400)
T ss_pred ccCCHHHHHHHHHHHHHHHHH--CCCeEEEEECCHHHHHHhCC
Confidence 999999999999999887532 25899999999998876665
No 222
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=346.01 Aligned_cols=199 Identities=31% Similarity=0.471 Sum_probs=166.8
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--CC
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--VD 570 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-----p~~G~I~idG~di~~--~~ 570 (709)
..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35999999999974 469999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHHhcceEEEcccCcccccCHHHHhccCCC----CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005203 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCT----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (709)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~----~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (709)
...+|+.++||+|++.+|.+|+.|||.++.. +...++++.++++..++.+.+... ++.. -..||||||||+
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~---~~~~--~~~LSgGe~qrv 189 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ---LDSS--GLDLSGGQQQRL 189 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHH---HhCC--cccCCHHHHHHH
Confidence 5678899999999999999999999986421 011245677777777764433211 1111 147999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 647 aLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||+++|++||||||||+||+++.+.+.+.|+++.++ +|+|+|||+++.+..-+|
T Consensus 190 ~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~----~tiii~tH~~~~i~~~~d 247 (285)
T PRK14254 190 CIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE----YTVVIVTHNMQQAARISD 247 (285)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC----CEEEEEeCCHHHHHhhcC
Confidence 9999999999999999999999999999999999998643 799999999998876665
No 223
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-40 Score=342.65 Aligned_cols=198 Identities=33% Similarity=0.489 Sum_probs=163.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCC--CCH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKE--VDI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----~~G~I~idG~di~~--~~~ 571 (709)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999974 3699999999999999999999999999999999999975 69999999999853 455
Q ss_pred HHHhcceEEEcccCcccc-cCHHHHhccCCC--C----CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHH
Q 005203 572 KWLRGRIGFVGQEPKLFR-MDISSNISYGCT--Q----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQ 644 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~--~----~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQ 644 (709)
..+|+.|+||+|++.+|. .|++||+.++.. . ...++++.++++..++.+++... ++.. -.+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LS~G~~q 155 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDR---LDKP--GGGLSGGQQQ 155 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhH---hhCC--cccCCHHHHH
Confidence 678999999999999997 599999986421 0 11123455566666664433211 1111 1479999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+...+|
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tviivsH~~~~~~~~~d 215 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ----DYTIVIVTHNMQQAARVSD 215 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHHHhCC
Confidence 99999999999999999999999999999999999998853 3899999999998876665
No 224
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-40 Score=342.21 Aligned_cols=196 Identities=33% Similarity=0.512 Sum_probs=161.8
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC--C---CcceEEECCEeCCC--CCH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE--P---TNGQILIDGFPIKE--VDI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~--p---~~G~I~idG~di~~--~~~ 571 (709)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999973 469999999999999999999999999999999999975 5 59999999999864 345
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCC-CCC-C----HHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDI-K----QQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (709)
..+++.++||+|++.+|.+|++||+.++.. ... . ++++.++++.+++.+.+. ..... ..||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 678889999999999999999999986421 011 1 234455555555443321 11222 47999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+++|++|||||||++||+++.+.+.+.|+++.+ +.|+|+|||+++.+...+|
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~vsH~~~~~~~~~d 215 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD----QYTIILVTHSMHQASRISD 215 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh----CCEEEEEECCHHHHHHhCC
Confidence 999999999999999999999999999999999999998864 3799999999998876655
No 225
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-40 Score=344.16 Aligned_cols=196 Identities=32% Similarity=0.499 Sum_probs=161.8
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--CCH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--VDI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-----p~~G~I~idG~di~~--~~~ 571 (709)
-|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 4999999999973 469999999999999999999999999999999999997 699999999999853 355
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCC-CCCCH-----HHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDIKQ-----QDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~~~-----e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (709)
..+|+.|+||+|++.+|.+|+.|||.++.. .+.++ +++.++++..++.+.+ +..... ..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL-------KDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH-------HHHHhcCcccCCHHHH
Confidence 678899999999999999999999987521 12221 2233334333332222 222222 47999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+...+|
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiiivsH~~~~i~~~~d 234 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK----DYSIIIVTHNMQQAARISD 234 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc----CCEEEEEEcCHHHHHHhCC
Confidence 999999999999999999999999999999999999998864 3899999999999877666
No 226
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-40 Score=343.35 Aligned_cols=199 Identities=31% Similarity=0.484 Sum_probs=167.3
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----cceEEECCEeCCC--CC
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-----NGQILIDGFPIKE--VD 570 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~-----~G~I~idG~di~~--~~ 570 (709)
+.|+++||+|+|++ +.+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||+|+.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999973 46999999999999999999999999999999999999996 8999999999853 34
Q ss_pred HHHHhcceEEEcccCcccccCHHHHhccCCC-----CCCC-HHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHH
Q 005203 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCT-----QDIK-QQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQ 642 (709)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-----~~~~-~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQ 642 (709)
...+|+.++|++|++.+|..|+.||+.++.. +..+ ++++.++++..++.+++..+ .+. ..|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-------IHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHH
Confidence 5678899999999999999999999986421 0111 34566677777765554421 222 4799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 643 kQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||++|||||+++|++|+|||||++||+++.+.+.+.|+++.+. .++|+|+|||+++.+..-+|
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~--~~~tiiivsH~~~~i~~~~d 219 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLR--SELTMVIVSHNLHQVSRLSD 219 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhcC
Confidence 99999999999999999999999999999999999999886531 25899999999999887766
No 227
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=7.1e-40 Score=324.76 Aligned_cols=164 Identities=30% Similarity=0.536 Sum_probs=149.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC-HHHHhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-IKWLRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~-~~~lR~~ 577 (709)
-|+++|++++| +++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|+.
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 38999999998 799999999999999999999999999999999999999999999999998876 3467889
Q ss_pred eEEEcccC----cccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 578 IGFVGQEP----KLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 578 I~~V~Qd~----~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
++||+|++ .+++.|++||+.++. . ||||||||++|||||+
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~--~----------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSS--L----------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHh--h----------------------------------cCHHHHHHHHHHHHHc
Confidence 99999995 355689999998762 1 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++|+|||||++||+++.+.+.+.|+++.+. ++|+|++||+++.+..-+|
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~---~~tiii~sh~~~~~~~~~d 172 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADA---GKAVLLISSELDELLGLCD 172 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999987542 5899999999998877665
No 228
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-40 Score=340.47 Aligned_cols=198 Identities=30% Similarity=0.498 Sum_probs=167.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCC--CCH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKE--VDI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-----p~~G~I~idG~di~~--~~~ 571 (709)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||+++.. .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 4789999999973 469999999999999999999999999999999999975 489999999999875 346
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCC-CC-CC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT-QD-IK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (709)
..+|+.++||+|++.+|.+|++|||.++.. .. .+ ++++.++++.+++.+++..+ +++. -..||||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LS~Gq~qr 154 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---LDKS--ALGLSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---HhCC--cccCCHHHHHH
Confidence 678999999999999999999999987521 01 12 24566677777776665432 2221 14799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|||||+++|++|+|||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+...+|
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~----~~tiii~sh~~~~~~~~~~ 213 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE----DYTIVIVTHNMQQATRVSK 213 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEECCHHHHHhhcC
Confidence 9999999999999999999999999999999999998864 4899999999999887766
No 229
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=343.34 Aligned_cols=196 Identities=28% Similarity=0.464 Sum_probs=162.9
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCCCC-HH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKEVD-IK 572 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----~~G~I~idG~di~~~~-~~ 572 (709)
.++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999973 4799999999999999999999999999999999999996 6999999999987663 45
Q ss_pred HHhcceEEEcccCcccccCHHHHhccCCC--CCCCHHHHHH----HHHHHhhHHHHHcCCCCcccccCC--CCCChHHHH
Q 005203 573 WLRGRIGFVGQEPKLFRMDISSNISYGCT--QDIKQQDIEW----AAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (709)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~~~~~e~i~~----aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (709)
.+|+.|+||+|++.+|..|++|||.++.. ...++++..+ .++..++. ..+++.+.. ..|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLW-------DAVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC-------chhhhHhhCCcccCCHHHHH
Confidence 78899999999999999999999987521 1124444332 23333332 222233333 489999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+...+|
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tiiivsH~~~~~~~~~d 230 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD----RLTVIIVTHNLAQAARISD 230 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999999998864 3799999999998876666
No 230
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=9.9e-40 Score=333.94 Aligned_cols=198 Identities=27% Similarity=0.420 Sum_probs=156.6
Q ss_pred EEEEEEEEEcCCC---C-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEEC--CE--eCCCCCH
Q 005203 500 IDFVDVSFRYSSR---E-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILID--GF--PIKEVDI 571 (709)
Q Consensus 500 I~~~nVsF~Y~~~---~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~id--G~--di~~~~~ 571 (709)
|+++||+++|++. + ..++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+| |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 1469999999999999999999999999999999999999999999998 43 6666655
Q ss_pred HH---H-hcceEEEcccCcccc-cCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChH
Q 005203 572 KW---L-RGRIGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGG 641 (709)
Q Consensus 572 ~~---l-R~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGG 641 (709)
.. + ++.++||+|++.+|. -|+.|||.+... ...+ ++++.++++..++.+... +.. ...||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~--~~~LS~G 153 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW------HLP--PATFSGG 153 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh------hCC--cccCCHH
Confidence 43 3 467999999998886 499999975311 0222 233344444444332211 111 2479999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 642 QkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||++|||||+++|++|+|||||++||+++.+.+.+.|+++.+. ++|+|+|||+++.+...+|
T Consensus 154 ~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~---g~tii~vsH~~~~~~~~~d 217 (224)
T TIGR02324 154 EQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR---GAALIGIFHDEEVRELVAD 217 (224)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcc
Confidence 999999999999999999999999999999999999999987642 5899999999998876665
No 231
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.1e-39 Score=342.61 Aligned_cols=199 Identities=27% Similarity=0.430 Sum_probs=162.8
Q ss_pred cEEEEEEEEEcCCC------CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH
Q 005203 499 RIDFVDVSFRYSSR------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK 572 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~------~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~ 572 (709)
-|+++||+++|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999631 124799999999999999999999999999999999999999999999999999765666
Q ss_pred HHhcceEEEcccCc--ccc-cCHHHHhccCC---C---CCCCHHHHHHHHHHHhhH-HHHHcCCCCcccccCCCCCChHH
Q 005203 573 WLRGRIGFVGQEPK--LFR-MDISSNISYGC---T---QDIKQQDIEWAAKQAYAH-DFIMSLPSGYETLVDDDLLSGGQ 642 (709)
Q Consensus 573 ~lR~~I~~V~Qd~~--LF~-gTI~eNI~~g~---~---~~~~~e~i~~aa~~a~l~-d~I~~LP~GydT~vGe~~LSGGQ 642 (709)
..++.|+||+|++. ++. -|+.||+.+.. . ....++++.++++..++. +.....| ..|||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LS~G~ 154 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYP---------HMLAPGQ 154 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCc---------hhcCHHH
Confidence 66788999999985 443 38899986521 1 011234567777777773 3332221 4699999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 643 kQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||++|||||+++|++|||||||++||+++.+.+.+.|+++.+. .++|+|+|||+++.+..-+|
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tviivsH~~~~~~~~~d 218 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK--QGISYIYVTQHLGMMKHISD 218 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEeCCHHHHHHhcC
Confidence 99999999999999999999999999999999999999987531 15899999999998876665
No 232
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-39 Score=350.88 Aligned_cols=200 Identities=27% Similarity=0.416 Sum_probs=163.7
Q ss_pred cEEEEEEEEEcCCCC-------CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH
Q 005203 499 RIDFVDVSFRYSSRE-------MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~-------~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~ 571 (709)
-|+++||+++|+... ...+++||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997321 2469999999999999999999999999999999999999999999999999988864
Q ss_pred H---HHhcceEEEcccCc--ccc-cCHHHHhccC-----C-CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCC
Q 005203 572 K---WLRGRIGFVGQEPK--LFR-MDISSNISYG-----C-TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLS 639 (709)
Q Consensus 572 ~---~lR~~I~~V~Qd~~--LF~-gTI~eNI~~g-----~-~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LS 639 (709)
. .+|+.|+||+||+. |+. -|+.+|+... . ......+++.++++..++.+. +++... ..||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~~p--~~LS 156 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE------HYDRYP--HMFS 156 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH------HhcCCC--ccCC
Confidence 3 57889999999984 554 5899988631 0 101123456667777766421 223322 4699
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 640 GGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||||++|||||+.+|++||+|||||+||..+.+.|.+.|+++.++ .+.|+|+|||+++.+..-+|
T Consensus 157 gGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~--~g~til~iTHdl~~~~~~ad 223 (327)
T PRK11308 157 GGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE--LGLSYVFISHDLSVVEHIAD 223 (327)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999999999999988642 25899999999999877665
No 233
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.2e-39 Score=341.42 Aligned_cols=196 Identities=28% Similarity=0.390 Sum_probs=164.5
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---cceEEECCEeCCCC-----C
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT---NGQILIDGFPIKEV-----D 570 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~---~G~I~idG~di~~~-----~ 570 (709)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999973 46999999999999999999999999999999999999986 49999999998653 3
Q ss_pred HHHHhcceEEEcccCcccc-cCHHHHhccCCCC-------------CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCC
Q 005203 571 IKWLRGRIGFVGQEPKLFR-MDISSNISYGCTQ-------------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD 636 (709)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~-------------~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~ 636 (709)
...+|+.++||+|++.+|. .|+.||+.++... ...++++.++++..++.+.+.+.| .
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~ 151 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV---------S 151 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc---------c
Confidence 4567889999999999987 5999999875310 112345666777777665544422 3
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 637 LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 637 ~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.||||||||++|||||+.+|++|||||||++||.++.+.+.+.|+++.+. .++|+|+|||+++.+..-+|
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tvii~tH~~~~~~~~~d 221 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN--DGITVVVTLHQVDYALRYCE 221 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 69999999999999999999999999999999999999999999988632 25899999999998766555
No 234
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=342.49 Aligned_cols=198 Identities=27% Similarity=0.408 Sum_probs=166.5
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCC--CCH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKE--VDI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----~~G~I~idG~di~~--~~~ 571 (709)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||+++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 6999999999974 4699999999999999999999999999999999999874 69999999999864 345
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCCC----CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCTQ----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~----~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (709)
..+|+.|+||+|++.+|.+|+.|||.++... ...++++.++++.+++.+++... .+.. -..||||||||++
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LSgGq~qrv~ 171 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDK---LKEK--GTALSGGQQQRLC 171 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHH---hcCC--cccCCHHHHHHHH
Confidence 5788999999999999999999999876310 11234566677777776554321 1111 1479999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||+++|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+..-+|
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tiii~sH~~~~~~~~~d 228 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE----QYTIIMVTHNMQQASRVAD 228 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999998864 3899999999999877666
No 235
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=342.31 Aligned_cols=198 Identities=33% Similarity=0.494 Sum_probs=166.8
Q ss_pred CCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCC----
Q 005203 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIK---- 567 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----~~G~I~idG~di~---- 567 (709)
.+.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.+||.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 456999999999973 4699999999999999999999999999999999999985 7999999998874
Q ss_pred CCCHHHHhcceEEEcccCcccccCHHHHhccCCC-CC-----CCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCC
Q 005203 568 EVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCT-QD-----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLS 639 (709)
Q Consensus 568 ~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~-----~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LS 639 (709)
..+...+|+.|+|++|++.+|.+|++|||.++.. .. ..++++.++++.+++.+++. +..+. ..||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 3345678899999999999999999999987521 01 12356666777766654333 22333 4799
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 640 GGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||||++|||||+++|++|+|||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+...+|
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~----~~tiiivth~~~~~~~~~d 228 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN----KVTILIVTHNMQQAARVSD 228 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh----CCEEEEEecCHHHHHHhCC
Confidence 9999999999999999999999999999999999999999998864 3899999999999877665
No 236
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-39 Score=341.72 Aligned_cols=193 Identities=26% Similarity=0.361 Sum_probs=162.9
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC--------cceEEECCEeCCCCCH
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT--------NGQILIDGFPIKEVDI 571 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~--------~G~I~idG~di~~~~~ 571 (709)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999963 47999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHhcceEEEcccCc-ccccCHHHHhccCCCCC------C---CHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCC
Q 005203 572 KWLRGRIGFVGQEPK-LFRMDISSNISYGCTQD------I---KQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLS 639 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~-LF~gTI~eNI~~g~~~~------~---~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LS 639 (709)
..+++.++||+|++. +|..|++||+.++.... . +++++.++++..++ ++.++. ..||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA-----------TALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc-----------HhhhcCCcccCC
Confidence 888999999999986 68899999998753111 0 12334445555444 333433 4799
Q ss_pred hHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 640 GGQKQRIAIARAIL---------RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 640 GGQkQRIaLARALl---------r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||||++|||||+ .+|++|||||||++||+++.+.+.+.|+++.++ .++|+|+|||+++.+..-+|
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tviiisH~~~~~~~~~d 223 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD--WNLGVLAIVHDPNLAARHAD 223 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCC
Confidence 99999999999999 599999999999999999999999999987542 25899999999998876555
No 237
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.2e-39 Score=318.50 Aligned_cols=155 Identities=34% Similarity=0.492 Sum_probs=140.8
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 5789999999743 47999999999999999999999999999999999999999999999873 6899
Q ss_pred EEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEE
Q 005203 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTIL 659 (709)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~IL 659 (709)
|++|++.++++|++|||.++ ....||||||||++|||||+++|++|
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~l 113 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFV 113 (166)
T ss_pred EECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999864 12579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 660 ILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 660 ILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||++||+++.+.+.+.|+++ ++|+|+|||+++.. ..+|
T Consensus 114 llDEPt~~LD~~~~~~l~~~l~~~------~~tiiivsh~~~~~-~~~d 155 (166)
T cd03223 114 FLDEATSALDEESEDRLYQLLKEL------GITVISVGHRPSLW-KFHD 155 (166)
T ss_pred EEECCccccCHHHHHHHHHHHHHh------CCEEEEEeCChhHH-hhCC
Confidence 999999999999999999999876 37999999999854 3454
No 238
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=342.12 Aligned_cols=193 Identities=28% Similarity=0.435 Sum_probs=160.4
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 48999999999732 579999999999999999999999999999999999999999999999999752 2223469
Q ss_pred EEEcccCcc---cccCHHHHhccCCC---------CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005203 579 GFVGQEPKL---FRMDISSNISYGCT---------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (709)
Q Consensus 579 ~~V~Qd~~L---F~gTI~eNI~~g~~---------~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (709)
+||+|++.+ +..+++||+.++.. ...+++++.++++..++.++..+ .+ ..||||||||+
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~~--~~LSgG~~qrv 151 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-------QI--GELSGGQKKRV 151 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC-------Cc--ccCCHHHHHHH
Confidence 999999875 56689999875311 01123456667777777665433 22 36999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 647 aLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||+++|++|+|||||++||+++.+.+.+.|+++.+. ++|+|+|||+++.+...+|
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~---g~tviivsH~~~~~~~~~d 210 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE---GKTMLVSTHNLGSVTEFCD 210 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999999988642 5899999999998877665
No 239
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-39 Score=326.49 Aligned_cols=186 Identities=20% Similarity=0.321 Sum_probs=157.2
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ +.+++ +||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 689999999963 34554 99999999999999999999999999999999999999999999987543 45699
Q ss_pred EEcccCc-ccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCE
Q 005203 580 FVGQEPK-LFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTI 658 (709)
Q Consensus 580 ~V~Qd~~-LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~I 658 (709)
|++|++. +|..|++|||.++......++++.++++..++.++..+. ..+||||||||++||||++++|++
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~G~~~rl~la~al~~~p~~ 144 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEK---------CYSLSSGMQKIVAIARLIACQSDL 144 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccC---------hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999875 478999999998643122456777777888876654432 146999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 659 LILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 659 LILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
|+|||||++||+++.+.+.+.|+...+ .++|+|+|||+++.+..
T Consensus 145 lllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 145 WLLDEVETNLSKENRDLLNNLIVMKAN---SGGIVLLSSHLESSIKS 188 (195)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCccccch
Confidence 999999999999999999999975432 26899999999987765
No 240
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.3e-39 Score=347.83 Aligned_cols=192 Identities=23% Similarity=0.393 Sum_probs=161.2
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
++++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. +...+|+.+|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999973 569999999999999999999999999999999999999999999999999976 4567889999
Q ss_pred EEcccCccccc-CHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 580 FVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
|++|++.+|.+ |+.||+.++.. ...+ .+++.++++..++.+...+ .+ ..||||||||++|||||+
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~~--~~LS~G~~qrv~la~al~ 149 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-------KI--GQLSKGYRQRVGLAQALI 149 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-------ch--hhCCHHHHHHHHHHHHHh
Confidence 99999999976 99999986421 0112 2334444444444333211 11 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++|||||||++||+++.+.+.+.|+++++ ++|+|++||+++.+..-||
T Consensus 150 ~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~----~~tiii~sH~l~~~~~~~d 200 (301)
T TIGR03522 150 HDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK----DKTIILSTHIMQEVEAICD 200 (301)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC----CCEEEEEcCCHHHHHHhCC
Confidence 99999999999999999999999999998854 4899999999998877666
No 241
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=353.98 Aligned_cols=191 Identities=27% Similarity=0.453 Sum_probs=165.6
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC----CHHHHh
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV----DIKWLR 575 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~----~~~~lR 575 (709)
|++ ||+++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+. +...++
T Consensus 2 l~~-~l~k~~~~---~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999974 22 3 89999999999999999999999999999999999999999999998653 244578
Q ss_pred cceEEEcccCcccc-cCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcc
Q 005203 576 GRIGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 576 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr 654 (709)
+.|+||+|++.+|. .|++|||.++.. ..+++++.++++..++.++..+.| ..||||||||++|||||++
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMA-KSMVAQFDKIVALLGIEPLLDRYP---------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhh-hhhHHHHHHHHHHcCCchhhhCCc---------ccCCHHHHHHHHHHHHHHc
Confidence 89999999999996 699999998744 445677888888888877666655 3699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 655 DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++|+||||||+||+++.+.+.+.|+++.++ .++|+|+|||+++.+..-+|
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tii~vTHd~~~~~~~~d 197 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLARE--INIPILYVSHSLDEILRLAD 197 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEecCHHHHHHhCC
Confidence 99999999999999999999999999887642 25899999999998776665
No 242
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=340.45 Aligned_cols=198 Identities=27% Similarity=0.395 Sum_probs=169.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCC--CCH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKE--VDI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----~~G~I~idG~di~~--~~~ 571 (709)
.+.+++++++|.+ .++|+|+||+|++||++||+|+||||||||+|+|+|+++| ++|+|.+||.++.. .+.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999963 4799999999999999999999999999999999999987 79999999999864 344
Q ss_pred HHHhcceEEEcccCcccccCHHHHhccCCC----CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005203 572 KWLRGRIGFVGQEPKLFRMDISSNISYGCT----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~----~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (709)
..+|+.|+||+|++.+|..|+.|||.++.. .....+++.++++.+++.+.+.... +. .-.+|||||+||++
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~---~~--~~~~LS~G~~qrv~ 159 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKL---KV--SGLSLSGGQQQRLC 159 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhh---hC--CcccCCHHHHHHHH
Confidence 577889999999999999999999987631 0112457788888888766654321 11 11479999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||+++|++|+|||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+...+|
T Consensus 160 laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~----~~tii~isH~~~~i~~~~d 216 (261)
T PRK14263 160 IARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK----DYTIALVTHNMQQAIRVAD 216 (261)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999998853 4899999999999887776
No 243
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-39 Score=343.90 Aligned_cols=199 Identities=32% Similarity=0.472 Sum_probs=162.9
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCCC--C
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKEV--D 570 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-----p~~G~I~idG~di~~~--~ 570 (709)
..|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999974 469999999999999999999999999999999999865 4999999999998653 3
Q ss_pred HHHHhcceEEEcccCcccccCHHHHhccCCC-CCC-C----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHH
Q 005203 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDI-K----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQ 644 (709)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~-~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQ 644 (709)
...+|+.|+||+|++.+|.+|+.|||.++.. ... + ++++.++++..++.+.+.. .++..+ ..|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~~~~--~~LSgGq~q 189 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD---RLDKNA--LGLSGGQQQ 189 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh---HhhCCh--hhCCHHHHH
Confidence 3467899999999999999999999997521 011 1 2345556666655433211 112211 479999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|||||+++|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+..-+|
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~----~~tvIivsH~~~~~~~~~d 249 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG----SYTIMIVTHNMQQASRVSD 249 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999999998864 3799999999998876665
No 244
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-39 Score=326.86 Aligned_cols=180 Identities=27% Similarity=0.444 Sum_probs=150.8
Q ss_pred cEEEEEEEEEcCCC-CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCcceEEECCEeCCCCCHHHH
Q 005203 499 RIDFVDVSFRYSSR-EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE---PTNGQILIDGFPIKEVDIKWL 574 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~-~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~---p~~G~I~idG~di~~~~~~~l 574 (709)
.+.++||+|.|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++...+ ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 36899999999853 34689999999999999999999999999999999999999 89999999999998765 467
Q ss_pred hcceEEEcccCcccc-cCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 575 RGRIGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 575 R~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
|+.++||+|++.+|. .|++|||.++.. .. .+..+ ..||||||||++|||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~--~~-----------------------~~~~~--~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR--CK-----------------------GNEFV--RGISGGERKRVSIAEALV 134 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh--hc-----------------------cccch--hhCCHHHHHHHHHHHHHh
Confidence 889999999998887 599999987621 10 11111 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEe-cChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIA-HRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIA-HRlsti~~~~~ 708 (709)
++|++|||||||++||+++++.+.+.|+++.++ .+.|+|+++ |+++.+...+|
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~~t~ii~~~h~~~~~~~~~d 188 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADV--LKTTTFVSLYQASDEIYDLFD 188 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEEcCCHHHHHHhCC
Confidence 999999999999999999999999999987642 135766665 55566665554
No 245
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-39 Score=338.47 Aligned_cols=198 Identities=33% Similarity=0.500 Sum_probs=161.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----cceEEECCEeCCC--CCH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-----NGQILIDGFPIKE--VDI 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~-----~G~I~idG~di~~--~~~ 571 (709)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|+ +|+|.+||.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999973 47999999999999999999999999999999999999875 8999999999875 345
Q ss_pred HHHhcceEEEcccCcccc-cCHHHHhccCCC-CCC-CHHHHHHH----HHHHhhHHHHHcCCCCcccccCCCCCChHHHH
Q 005203 572 KWLRGRIGFVGQEPKLFR-MDISSNISYGCT-QDI-KQQDIEWA----AKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQ 644 (709)
Q Consensus 572 ~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~-~~e~i~~a----a~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQ 644 (709)
..+|+.|+|++|++.+|. .|+.||+.++.. ... .+++..+. ++..++.+.+ +..+++.+ ..|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~~--~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTPA--TGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCCc--ccCCHHHHH
Confidence 678899999999999998 599999986421 111 23333332 2233332222 22233332 479999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|||||+++|++|||||||++||+++...+.+.|+++.+ ++|+|++||+++.+...+|
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tiii~sH~~~~~~~~~d 215 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK----VTTIIIVTHNMHQAARVSD 215 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999999998864 4899999999998887666
No 246
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=346.86 Aligned_cols=197 Identities=33% Similarity=0.507 Sum_probs=165.5
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCcceEEECCEeCCCC--C
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-----PTNGQILIDGFPIKEV--D 570 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-----p~~G~I~idG~di~~~--~ 570 (709)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35999999999974 469999999999999999999999999999999999996 6899999999998653 4
Q ss_pred HHHHhcceEEEcccCcccccCHHHHhccCCCC------------------CCCHHHHHHHHHHHhhHHHHHcCCCCcccc
Q 005203 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCTQ------------------DIKQQDIEWAAKQAYAHDFIMSLPSGYETL 632 (709)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~------------------~~~~e~i~~aa~~a~l~d~I~~LP~GydT~ 632 (709)
...+|+.|+||+|++.+|++|++|||.++... +..++++.++++..++.+ ++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhHH
Confidence 56788999999999999999999999975210 011334555555555433 33344
Q ss_pred cCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 633 VDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 633 vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++. .+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.++ +|+|+|||+++.+..-+|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~----~tiiivtH~~~~i~~~~d 267 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE----YTVVVVTHNMQQAARISD 267 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC----CEEEEEEcCHHHHHHhcC
Confidence 443 589999999999999999999999999999999999999999999988643 799999999998876555
No 247
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.1e-39 Score=350.88 Aligned_cols=198 Identities=31% Similarity=0.479 Sum_probs=163.6
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+...+ ..+|+.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999974 46999999999999999999999999999999999999999999999999997654 5788999
Q ss_pred EEEcccCccc-ccCHHHHhccCCC-CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCC
Q 005203 579 GFVGQEPKLF-RMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (709)
Q Consensus 579 ~~V~Qd~~LF-~gTI~eNI~~g~~-~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p 656 (709)
|||+|++.+| ..|+.||+.++.. ...+.++..+.++. +.+. ..|++.+++.+ .+||||||||++|||||+.+|
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~-~~L~~~~~~~~--~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEF-ARLESKADARV--SDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHH-cCCchhhCCCh--hhCCHHHHHHHHHHHHHhcCC
Confidence 9999999986 6799999986421 11232322222211 1111 23444455555 379999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 657 TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|||||||++||+.+.+.+.+.|+++.+. |+|+|++||+++.+..-||
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~---g~tilisSH~l~e~~~~~d 240 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLAR---GKTILLTTHFMEEAERLCD 240 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEECCCHHHHHHhCC
Confidence 999999999999999999999999988643 6899999999998877665
No 248
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.5e-39 Score=330.88 Aligned_cols=190 Identities=26% Similarity=0.423 Sum_probs=162.1
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999974 46999999999999999999999999999999999999999999999999876422 35799
Q ss_pred EEcccCcccc-cCHHHHhccCCC-CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCC
Q 005203 580 FVGQEPKLFR-MDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657 (709)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ 657 (709)
|++|++.+|. .|++||+.++.. ...+++++.++++..++.+...+-| ..||||||||++||||++++|+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~~rv~laral~~~p~ 144 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA---------KQFSLGMKQRLGIAIALLNHPK 144 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999886 699999986421 1234667777777777766544322 4699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 658 ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|+|||||++||+++.+.+.+.|+++.+. ++|+|++||+++.+...+|
T Consensus 145 llllDEP~~~LD~~~~~~l~~~L~~~~~~---~~tiii~sH~~~~~~~~~d 192 (223)
T TIGR03740 145 LLILDEPTNGLDPIGIQELRELIRSFPEQ---GITVILSSHILSEVQQLAD 192 (223)
T ss_pred EEEECCCccCCCHHHHHHHHHHHHHHHHC---CCEEEEEcCCHHHHHHhcC
Confidence 99999999999999999999999987642 5899999999998766555
No 249
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-39 Score=333.18 Aligned_cols=192 Identities=31% Similarity=0.505 Sum_probs=163.9
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++|++++|++ + +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE---F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC---c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999973 3 8999999999999999999999999999999999999999999999999987654 378999
Q ss_pred EEcccCcccc-cCHHHHhccCCC-CCC----CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 580 FVGQEPKLFR-MDISSNISYGCT-QDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
||+|++.+|. .|+.||+.++.. ... .++++.++++..++.+++.+.| ..||||||||++||||++
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~ 145 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP---------ETLSGGEQQRVAIARALV 145 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc---------ccCCHHHHHHHHHHHHHH
Confidence 9999999995 799999986521 111 2345667777777777666544 469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++|+|||||++||+++.+.+.+.|+++..+ .++|+|++||++..+..-+|
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~--~~~tili~tH~~~~~~~~~d 198 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKE--FGVTVLHVTHDFEEAWALAD 198 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCC
Confidence 999999999999999999999999999887531 25899999999998765444
No 250
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.9e-40 Score=309.59 Aligned_cols=189 Identities=30% Similarity=0.457 Sum_probs=159.7
Q ss_pred EEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEE
Q 005203 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (709)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~ 580 (709)
++++|.+.- . +.++|+|+||++.+||.+||+||||||||||+|.++-|..|++|++++-|+|++.++++.+|++|+|
T Consensus 5 e~kq~~y~a--~-~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY 81 (223)
T COG4619 5 ELKQVGYLA--G-DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSY 81 (223)
T ss_pred HHHHHHhhc--C-CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHH
Confidence 445554433 3 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCcccccCHHHHhccCC---CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccC
Q 005203 581 VGQEPKLFRMDISSNISYGC---TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 581 V~Qd~~LF~gTI~eNI~~g~---~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~ 655 (709)
+.|.|.||.+||.||+-|-- .+..|.+.-.+.++.+++.+.+. .. .+||||+|||++|+|-|---
T Consensus 82 ~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L----------~k~it~lSGGE~QriAliR~Lq~~ 151 (223)
T COG4619 82 CAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSIL----------TKNITELSGGEKQRIALIRNLQFM 151 (223)
T ss_pred HHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhh----------cchhhhccchHHHHHHHHHHhhcC
Confidence 99999999999999998731 11345554455555555444332 22 48999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 656 PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
|+||+|||+|||||+.+.+.|.+.|.++-.+ +++.+++|||...-..
T Consensus 152 P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~--q~vAv~WiTHd~dqa~ 198 (223)
T COG4619 152 PKILLLDEITSALDESNKRNIEEMIHRYVRE--QNVAVLWITHDKDQAI 198 (223)
T ss_pred CceEEecCchhhcChhhHHHHHHHHHHHhhh--hceEEEEEecChHHHh
Confidence 9999999999999999999999999887633 3699999999987633
No 251
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-39 Score=349.11 Aligned_cols=202 Identities=26% Similarity=0.331 Sum_probs=160.3
Q ss_pred cEEEEEEEEEcCCCCC-CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC----CCcceEEECCEeCCCCCHHH
Q 005203 499 RIDFVDVSFRYSSREM-VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE----PTNGQILIDGFPIKEVDIKW 573 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~-~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~----p~~G~I~idG~di~~~~~~~ 573 (709)
-|+++||+++|++... ..+|+||||+|++||++|||||||||||||+++|+|+++ |++|+|.+||+|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999975321 369999999999999999999999999999999999998 48999999999999888766
Q ss_pred Hhc----ceEEEcccCc--ccc-cCHHH----HhccCC--CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCCh
Q 005203 574 LRG----RIGFVGQEPK--LFR-MDISS----NISYGC--TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSG 640 (709)
Q Consensus 574 lR~----~I~~V~Qd~~--LF~-gTI~e----NI~~g~--~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSG 640 (709)
+++ .|+||+|++. ++. -|+.+ |+.... .....++++.++++..++.+....+ +.. -..|||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l----~~~--p~~LSg 156 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRL----DVY--PHQLSG 156 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHH----hCC--chhCCH
Confidence 543 6999999995 332 34554 444321 1112345667777777775422111 110 147999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 641 GQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 641 GQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||++|||||+.+|++||+|||||+||+.+...|.+.|+++.++ .+.|+|+|||+++.+..-+|
T Consensus 157 Gq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~--~g~til~iTHdl~~~~~~ad 222 (326)
T PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK--ENMALVLITHDLALVAEAAH 222 (326)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999999999999988642 25899999999998876665
No 252
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.5e-39 Score=347.52 Aligned_cols=185 Identities=25% Similarity=0.386 Sum_probs=154.9
Q ss_pred EcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcc
Q 005203 508 RYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKL 587 (709)
Q Consensus 508 ~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~L 587 (709)
+|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.. ....+|++||||+|++.+
T Consensus 2 ~y~~---~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~ 77 (302)
T TIGR01188 2 VYGD---FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASV 77 (302)
T ss_pred eeCC---eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCC
Confidence 5652 479999999999999999999999999999999999999999999999999876 456788999999999999
Q ss_pred ccc-CHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 005203 588 FRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILIL 661 (709)
Q Consensus 588 F~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILIL 661 (709)
|.. |++||+.++.. ...+ ++++.++++..++.+...+ .+ ..||||||||++|||||+++|++|||
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~--~~LSgG~~qrv~la~al~~~p~lllL 148 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR-------PV--GTYSGGMRRRLDIAASLIHQPDVLFL 148 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCC-------ch--hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 976 99999987421 0112 2345555555555433222 11 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 662 DEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 662 DEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||++||+++.+.+.+.|+++.+. |+|+|++||+++.+..-||
T Consensus 149 DEPt~gLD~~~~~~l~~~l~~~~~~---g~tvi~~sH~~~~~~~~~d 192 (302)
T TIGR01188 149 DEPTTGLDPRTRRAIWDYIRALKEE---GVTILLTTHYMEEADKLCD 192 (302)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhC---CCEEEEECCCHHHHHHhCC
Confidence 9999999999999999999988643 6899999999998887776
No 253
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-39 Score=324.09 Aligned_cols=170 Identities=27% Similarity=0.441 Sum_probs=149.1
Q ss_pred cEEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCcceEEECCEeCCCCCHHHHh
Q 005203 499 RIDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY--EPTNGQILIDGFPIKEVDIKWLR 575 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~--~p~~G~I~idG~di~~~~~~~lR 575 (709)
.|+++|++|+|++.. ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999997521 257999999999999999999999999999999999987 489999999999985 5778
Q ss_pred cceEEEcccCccccc-CHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcc
Q 005203 576 GRIGFVGQEPKLFRM-DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 576 ~~I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr 654 (709)
+.++|++|++.+|.+ |++||+.++.. ++ .||||||||++|||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~-----------~~----------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL-----------LR----------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH-----------Hh----------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999998875 99999987510 00 699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh-hhhhhcC
Q 005203 655 DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI-STALSFD 708 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls-ti~~~~~ 708 (709)
+|++|+|||||++||+++...+.+.|+++.+. ++|+|+|||+++ .+...+|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~---~~tiiivtH~~~~~~~~~~d 177 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADS---GQAILCTIHQPSASIFEKFD 177 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHc---CCEEEEEEcCChHHHHhhCC
Confidence 99999999999999999999999999987642 589999999998 3555455
No 254
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=3e-39 Score=323.58 Aligned_cols=171 Identities=32% Similarity=0.536 Sum_probs=150.4
Q ss_pred cEEEEEEEEEcCCC---CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCcceEEECCEeCCCCCHHH
Q 005203 499 RIDFVDVSFRYSSR---EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY--EPTNGQILIDGFPIKEVDIKW 573 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~---~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~--~p~~G~I~idG~di~~~~~~~ 573 (709)
.|+++||+|+|++. .+.++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999752 0257999999999999999999999999999999999999 9999999999999874 37
Q ss_pred HhcceEEEcccCcccc-cCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 574 LRGRIGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 574 lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
+|+.|+|++|++.+|. .|++||+.++.. .. .||||||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~--~~-------------------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK--LR-------------------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH--hc-------------------------------cCCHHHHHHHHHHHHH
Confidence 7889999999999987 599999976411 00 6999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh-hhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI-STALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls-ti~~~~~ 708 (709)
+++|++|+|||||++||.++.+.+.+.|+++.+. ++|+|+|||+++ .+..-+|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~---~~tiii~sh~~~~~~~~~~d 180 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT---GRTIICSIHQPSSEIFELFD 180 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC---CCEEEEEecCchHHHHHhcC
Confidence 9999999999999999999999999999987642 689999999996 5554444
No 255
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-39 Score=327.20 Aligned_cols=189 Identities=28% Similarity=0.456 Sum_probs=154.0
Q ss_pred EEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC----CHHHHhc
Q 005203 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV----DIKWLRG 576 (709)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~----~~~~lR~ 576 (709)
++ ||+++|++. .+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.+||.++... +...+|+
T Consensus 3 ~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 45 999999752 34 99999999 99999999999999999999999999999999999998643 2345788
Q ss_pred ceEEEcccCcccc-cCHHHHhccCCCCCC----CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005203 577 RIGFVGQEPKLFR-MDISSNISYGCTQDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (709)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (709)
.++||+|++.+|. .|++||+.++.. .. +++++.++++..++.+.....| ..||||||||++||||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~a 145 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLK-RKRNREDRISVDELLDLLGLDHLLNRYP---------AQLSGGEKQRVALARA 145 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHh-hCCHHHHHHHHHHHHHHcCCHhHhhcCc---------ccCCHHHHHHHHHHHH
Confidence 9999999999995 599999987632 21 1233444444444433322211 4799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+++|++|+|||||++||+++.+.+.+.|+++.+. .++|+|+|||+++.+..-+|
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d 200 (214)
T cd03297 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN--LNIPVIFVTHDLSEAEYLAD 200 (214)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEecCHHHHHHhcC
Confidence 99999999999999999999999999999887532 25899999999998876665
No 256
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=5.7e-39 Score=333.19 Aligned_cols=198 Identities=26% Similarity=0.309 Sum_probs=154.7
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCcceEEECCEeCCCCCHHHHh-c
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL--YEPTNGQILIDGFPIKEVDIKWLR-G 576 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl--~~p~~G~I~idG~di~~~~~~~lR-~ 576 (709)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++...+....+ .
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999974 4699999999999999999999999999999999999 479999999999999888776654 5
Q ss_pred ceEEEcccCccccc-CHHHHhc-------cCCCCC-CCHHHHHHHHHHHhhHHHHH--cCCCCcccccCCCCCChHHHHH
Q 005203 577 RIGFVGQEPKLFRM-DISSNIS-------YGCTQD-IKQQDIEWAAKQAYAHDFIM--SLPSGYETLVDDDLLSGGQKQR 645 (709)
Q Consensus 577 ~I~~V~Qd~~LF~g-TI~eNI~-------~g~~~~-~~~e~i~~aa~~a~l~d~I~--~LP~GydT~vGe~~LSGGQkQR 645 (709)
.++||+|++.++.. |..+|+. .....+ .+..++.+ .+.+.+. .+|.++.+......||||||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 153 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQD-----LMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 153 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHH-----HHHHHHHHcCCChhhcccCCCCCCCHHHHHH
Confidence 79999999987764 4344432 211100 01111111 1122222 3555555544434799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhh-cC
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALS-FD 708 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~-~~ 708 (709)
++||||++++|++|+|||||++||+++.+.+.+.|+++.+. ++|+|+|||+++.+... +|
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~---~~tiii~sH~~~~~~~~~~d 214 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDG---KRSFIIVTHYQRILDYIKPD 214 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHhhhCC
Confidence 99999999999999999999999999999999999887642 58999999999987664 45
No 257
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=7e-39 Score=334.82 Aligned_cols=199 Identities=28% Similarity=0.410 Sum_probs=159.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEe-----CCCCCHHH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFP-----IKEVDIKW 573 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~d-----i~~~~~~~ 573 (709)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999974 469999999999999999999999999999999999999999999999999 87776554
Q ss_pred ----HhcceEEEcccCc--cc-ccCHHHHhccCC--CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHH
Q 005203 574 ----LRGRIGFVGQEPK--LF-RMDISSNISYGC--TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQ 642 (709)
Q Consensus 574 ----lR~~I~~V~Qd~~--LF-~gTI~eNI~~g~--~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQ 642 (709)
+++.++||+|++. ++ +.|+.|||.+.. ....+.+++.+ .++++++.++.+ ++..+. ..|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3667999999984 33 357888886421 00112222211 245666665432 123333 5899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 643 kQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||++|||||+++|++|||||||++||+++++.+.+.|+++.++ .+.|+|+|||+++.+...+|
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~isH~~~~~~~~~d 220 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDLAVARLLAH 220 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHhcC
Confidence 99999999999999999999999999999999999999887542 25899999999998876655
No 258
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=8.1e-39 Score=345.32 Aligned_cols=200 Identities=27% Similarity=0.399 Sum_probs=159.8
Q ss_pred cEEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---cceEEECCEeCCCCCHHHH
Q 005203 499 RIDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT---NGQILIDGFPIKEVDIKWL 574 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~---~G~I~idG~di~~~~~~~l 574 (709)
-++++||+++|+... ..++++|+||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.|+..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996421 246999999999999999999999999999999999999996 9999999999999887765
Q ss_pred h----cceEEEcccC--cccc-cCHHHHhccCC--CCCCCHHH----HHHHHHHHhhHHHHHcCCCCcccccCC--CCCC
Q 005203 575 R----GRIGFVGQEP--KLFR-MDISSNISYGC--TQDIKQQD----IEWAAKQAYAHDFIMSLPSGYETLVDD--DLLS 639 (709)
Q Consensus 575 R----~~I~~V~Qd~--~LF~-gTI~eNI~~g~--~~~~~~e~----i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LS 639 (709)
| +.|+||+||+ .++. .|+.+|+.... ....+.++ +.+.++.+ .||++++. ++. ..||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~v-------gL~~~~~~-~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAV-------KMPEARKR-MKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-------CCCChHHH-hcCCcccCC
Confidence 4 4799999998 4543 57777764311 01223333 33333333 34444332 333 5899
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 640 GGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||||++|||||+.+|++||+|||||+||..+...|.+.|+++.++ .+.|+|+|||+++.+..-+|
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~g~til~iTHdl~~~~~~~D 230 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE--FNTAIIMITHDLGVVAGICD 230 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEECCHHHHHHhCC
Confidence 99999999999999999999999999999999999999999988652 25899999999998876665
No 259
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.2e-38 Score=331.66 Aligned_cols=183 Identities=31% Similarity=0.500 Sum_probs=161.1
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..|
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 4899999999974 4699999999999999999999999999999999999999999999987 3479
Q ss_pred EEEcccCcccc---cCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccC
Q 005203 579 GFVGQEPKLFR---MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 579 ~~V~Qd~~LF~---gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~ 655 (709)
+|++|++.++. .|+.+|+.+. + ..+++++.++++..++.+.+.+.| ..||||||||++|||||+++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrv~laral~~~ 138 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-P-GTKKEDILPALKRVQAGHLIDAPM---------QKLSGGETQRVLLARALLNR 138 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-c-cccHHHHHHHHHHcCChHHHhCCh---------hhCCHHHHHHHHHHHHHhcC
Confidence 99999998875 4899998765 3 456788899999999887765432 46999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 656 PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|||||||++||+++...+.+.|+++.+. .++|+|+|||+++.+...+|
T Consensus 139 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tiiivsH~~~~i~~~~d 189 (251)
T PRK09544 139 PQLLVLDEPTQGVDVNGQVALYDLIDQLRRE--LDCAVLMVSHDLHLVMAKTD 189 (251)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCC
Confidence 9999999999999999999999999887532 15899999999998877666
No 260
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=7.2e-39 Score=336.67 Aligned_cols=201 Identities=30% Similarity=0.442 Sum_probs=162.6
Q ss_pred cEEEEEEEEEcCCC------CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH-
Q 005203 499 RIDFVDVSFRYSSR------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI- 571 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~------~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~- 571 (709)
-|+++||+|+|++. .++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38899999999741 02579999999999999999999999999999999999999999999999999987765
Q ss_pred --HHHhcceEEEcccCc--cc-ccCHHHHhccCCC--CCCCHHHHHHHHHHHhhHHHHHcCCCCcccc-cCC--CCCChH
Q 005203 572 --KWLRGRIGFVGQEPK--LF-RMDISSNISYGCT--QDIKQQDIEWAAKQAYAHDFIMSLPSGYETL-VDD--DLLSGG 641 (709)
Q Consensus 572 --~~lR~~I~~V~Qd~~--LF-~gTI~eNI~~g~~--~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~-vGe--~~LSGG 641 (709)
..+|+.++||+|++. ++ ..|+.||+.+... .+.+. ......+++.+..+ |+++. .+. ..||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~-----~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDK-----AERLARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCH-----HHHHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 357889999999983 43 5799999865311 01111 12223345555544 66543 333 489999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 642 QkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||++|||||+.+|++|||||||++||+++...+.+.|+++.+. .++|+|+|||+++.+...+|
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tiiivsH~~~~i~~~~d 220 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ--FGTACLFITHDLRLVERFCQ 220 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH--cCcEEEEEECCHHHHHHhCC
Confidence 999999999999999999999999999999999999999887542 15899999999998876666
No 261
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-39 Score=345.91 Aligned_cols=199 Identities=21% Similarity=0.338 Sum_probs=162.5
Q ss_pred cEEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC----CCcceEEECCEeCCCCCHHH
Q 005203 499 RIDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE----PTNGQILIDGFPIKEVDIKW 573 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~----p~~G~I~idG~di~~~~~~~ 573 (709)
-|+++||+++|+... ..++++|+||+|++||++||||+||||||||+++|+|+.+ |++|+|.+||+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 378999999996421 2469999999999999999999999999999999999996 58999999999998888765
Q ss_pred Hh----cceEEEcccCcc--c-ccCHHHHhccCC----CC-----C--CCHHHHHHHHHHHhhHHH---HHcCCCCcccc
Q 005203 574 LR----GRIGFVGQEPKL--F-RMDISSNISYGC----TQ-----D--IKQQDIEWAAKQAYAHDF---IMSLPSGYETL 632 (709)
Q Consensus 574 lR----~~I~~V~Qd~~L--F-~gTI~eNI~~g~----~~-----~--~~~e~i~~aa~~a~l~d~---I~~LP~GydT~ 632 (709)
++ +.|+||+|++.. + ..||.+|+.... .. + ..++++.++++..++.+. ..+.|
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p------ 156 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP------ 156 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc------
Confidence 53 479999999973 3 468999986420 00 0 113456677777777532 22222
Q ss_pred cCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 633 VDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 633 vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
..||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.++ .+.|+|+|||+++.+..-+|
T Consensus 157 ---~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 157 ---YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN--NNTTILLISHDLQMLSQWAD 227 (330)
T ss_pred ---hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCC
Confidence 469999999999999999999999999999999999999999999988642 25899999999999877665
No 262
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=9.3e-39 Score=348.41 Aligned_cols=188 Identities=31% Similarity=0.482 Sum_probs=157.3
Q ss_pred EEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC----HHHHhcceE
Q 005203 504 DVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD----IKWLRGRIG 579 (709)
Q Consensus 504 nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~----~~~lR~~I~ 579 (709)
||+++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|+.|+
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999974 23 4 999999999999999999999999999999999999999999999986532 346788999
Q ss_pred EEcccCccccc-CHHHHhccCCCCCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcc
Q 005203 580 FVGQEPKLFRM-DISSNISYGCTQDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr 654 (709)
||+|++.+|.. |++||+.++.. ..+ ++++.++++..++.+...+.| ..||||||||++|||||++
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMK-RARPSERRISFERVIELLGIGHLLGRLP---------GRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhh-ccChhHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHHc
Confidence 99999999975 99999998632 211 234555666666555444433 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 655 DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++|+||||||+||+++.+.+.+.|+++.++ .++|+|+|||+++.+..-+|
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tiiivtH~~~~~~~~~d 200 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAE--FGIPILYVSHSLQEVLRLAD 200 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCC
Confidence 99999999999999999999999999987642 25899999999998876565
No 263
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=8.1e-39 Score=349.62 Aligned_cols=192 Identities=25% Similarity=0.385 Sum_probs=160.1
Q ss_pred EEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE----eCCCCCHHHH---h
Q 005203 503 VDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF----PIKEVDIKWL---R 575 (709)
Q Consensus 503 ~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~----di~~~~~~~l---R 575 (709)
.++..+|+. ..+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||. ++...+...+ |
T Consensus 28 ~~~~~~~g~---~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r 104 (382)
T TIGR03415 28 EEILDETGL---VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLR 104 (382)
T ss_pred HHHHHhhCC---EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHh
Confidence 345566753 56899999999999999999999999999999999999999999999996 6666665544 3
Q ss_pred -cceEEEcccCcccc-cCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 576 -GRIGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 576 -~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
++|+||+|++.+|+ .|++||+.++.. ...+ ++++.++++..++.++....| ..||||||||++|
T Consensus 105 ~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~---------~~LSgGq~QRV~L 175 (382)
T TIGR03415 105 THRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP---------GELSGGMQQRVGL 175 (382)
T ss_pred cCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHH
Confidence 58999999999997 799999997631 0112 345667777777766655444 3599999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+++|+||+||||||+||+.+.+.+++.|.++.++ .++|+|+|||+++.+..-+|
T Consensus 176 ARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~--~~~TII~iTHdl~e~~~l~D 233 (382)
T TIGR03415 176 ARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAK--LNKTIIFVSHDLDEALKIGN 233 (382)
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999888642 25899999999998766555
No 264
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-39 Score=330.10 Aligned_cols=194 Identities=30% Similarity=0.490 Sum_probs=166.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE---eCCCCCHHHHh
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF---PIKEVDIKWLR 575 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~---di~~~~~~~lR 575 (709)
.|+++|++..|+. ..+++|+|++|+.||.+|+.||||||||||+++|+||..|++|.|.+||. |.++. ..-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhh
Confidence 4789999999984 46899999999999999999999999999999999999999999999999 66663 3445
Q ss_pred cceEEEcccCccc-ccCHHHHhccCCC-------CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005203 576 GRIGFVGQEPKLF-RMDISSNISYGCT-------QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (709)
Q Consensus 576 ~~I~~V~Qd~~LF-~gTI~eNI~~g~~-------~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (709)
++||+|+||.-|| ..||+|||+||-. +.....++.+.++.+++.+.-++-|. +||||||||+|
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~---------QLSGGQrQRVA 147 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA---------QLSGGQRQRVA 147 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCch---------hcChHHHHHHH
Confidence 7799999999998 7899999999952 11234566666777777666555553 59999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||.-+|++|+||||.++||++-.+.+.+-|+++... .|.|+++|||+++.+..-+|
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~--~~~ttvfVTHD~eea~~lad 206 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR--LGVTTVFVTHDQEEALELAD 206 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHh--hCceEEEEeCCHHHHHhhcc
Confidence 999999999999999999999999999999998887643 36899999999998876665
No 265
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-39 Score=333.69 Aligned_cols=198 Identities=28% Similarity=0.438 Sum_probs=162.1
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC------EeCCCCCHH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG------FPIKEVDIK 572 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG------~di~~~~~~ 572 (709)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++.+.+..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5899999999974 4699999999999999999999999999999999999999997666655 677777777
Q ss_pred HHhcceEEEcccCccccc-CHHHHhccCCCC-CC-CH----HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHH
Q 005203 573 WLRGRIGFVGQEPKLFRM-DISSNISYGCTQ-DI-KQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (709)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~~-~~-~~----e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (709)
.+|+.++|++|++.+|.+ |+.|||.++... .. ++ +++.++++..++++++... .+.. ...||||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~--~~~LS~G~~qr 161 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDR---LNSP--ASQLSGGQQQR 161 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhh---hcCC--cccCCHHHHHH
Confidence 889999999999999976 999999975320 11 22 2345566666654332110 1111 14799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|||||+++|++|+|||||++||..+++.+.+.|.++.+ ++|+|+|||+++.+..-+|
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tiilvsh~~~~~~~~~d 220 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN----EIAIVIVSHNPQQVARVAD 220 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CcEEEEEECCHHHHHHhCC
Confidence 9999999999999999999999999999999999998853 4899999999998866555
No 266
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.6e-38 Score=331.36 Aligned_cols=193 Identities=24% Similarity=0.366 Sum_probs=158.5
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC----CcceEEECCEeCCCCCHHHH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP----TNGQILIDGFPIKEVDIKWL 574 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p----~~G~I~idG~di~~~~~~~l 574 (709)
.|+++||+|+| + .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.+++.. +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 3 3699999999999999999999999999999999999999 999999999998632 233
Q ss_pred hcceEEEcccCc-ccc--cCHHHHhccC----CCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHH
Q 005203 575 RGRIGFVGQEPK-LFR--MDISSNISYG----CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQR 645 (709)
Q Consensus 575 R~~I~~V~Qd~~-LF~--gTI~eNI~~g----~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQR 645 (709)
++.|+||+|++. .|. .|+.+|+.+. .. ...++++.++++..++.++ ++.++. ..||||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qr 148 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGK-PADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQR 148 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCC-ChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHH
Confidence 567999999985 454 5888887542 12 2345667777777776442 112232 4799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|||||+++|++||||||||+||+++...+.+.|+++.++ .++|+|+|||+++.+...+|
T Consensus 149 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~til~~sH~~~~~~~~~d 209 (254)
T PRK10418 149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK--RALGMLLVTHDMGVVARLAD 209 (254)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhCC
Confidence 99999999999999999999999999999999999887532 25899999999998876555
No 267
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.2e-38 Score=336.39 Aligned_cols=196 Identities=35% Similarity=0.537 Sum_probs=169.9
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+.+|+. +..+|+||||+|++||.+|++||||||||||+|+|+|+..|++|+|.++|.|...- ...+|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999983 25799999999999999999999999999999999999999999999999998764 78899999
Q ss_pred EEEcccCccc-ccCHHHHhccCCC-----CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 579 GFVGQEPKLF-RMDISSNISYGCT-----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 579 ~~V~Qd~~LF-~gTI~eNI~~g~~-----~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
|||||+|.++ .-|++||+.|... ++.+++++.+.++..++.+.- +..+ +.||||||||+.||+||
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~--~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKKV--RTLSGGMKQRLSIALAL 151 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccch--hhcCHHHHHHHHHHHHH
Confidence 9999999977 6789999987531 112356788888888876522 1111 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+.+|++||||||||+||+.+...+.+.|+++.++ .++|+++.||.++.+..-||
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~--g~~tvlissH~l~e~~~~~d 205 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKE--GGVTILLSTHILEEAEELCD 205 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC--CCcEEEEeCCcHHHHHHhCC
Confidence 9999999999999999999999999999998864 23799999999999988877
No 268
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.9e-38 Score=307.86 Aligned_cols=149 Identities=38% Similarity=0.553 Sum_probs=137.3
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH-HHHhcce
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI-KWLRGRI 578 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~-~~lR~~I 578 (709)
|+++||+++|++ .++++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++...+. +..|+.+
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 578999999974 369999999999999999999999999999999999999999999999999988775 4567889
Q ss_pred EEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCE
Q 005203 579 GFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTI 658 (709)
Q Consensus 579 ~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~I 658 (709)
+|++| ||||||||++||||++++|++
T Consensus 78 ~~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 78 AMVYQ------------------------------------------------------LSVGERQMVEIARALARNARL 103 (163)
T ss_pred EEEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 659 LILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 659 LILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+|||||++||+++.+.+.+.|+++.++ +.|+|++||+++.+...+|
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~~~~---~~tiii~sh~~~~~~~~~d 150 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRAQ---GVAVIFISHRLDEVFEIAD 150 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999988542 5899999999998776555
No 269
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.3e-38 Score=315.19 Aligned_cols=166 Identities=34% Similarity=0.527 Sum_probs=148.2
Q ss_pred EEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEE
Q 005203 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (709)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~ 580 (709)
+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.|+|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999974 469999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEE
Q 005203 581 VGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILI 660 (709)
Q Consensus 581 V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILI 660 (709)
++| +++..++.+++.+.| ..||||||||++|||||+++|+++|
T Consensus 78 ~~q----------------------------~l~~~gl~~~~~~~~---------~~LS~G~~qrl~laral~~~p~lll 120 (180)
T cd03214 78 VPQ----------------------------ALELLGLAHLADRPF---------NELSGGERQRVLLARALAQEPPILL 120 (180)
T ss_pred HHH----------------------------HHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 666677776654422 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 661 LDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 661 LDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||++||+++...+.+.|+++.++ .++|+|+|||+++.+...+|
T Consensus 121 lDEP~~~LD~~~~~~~~~~l~~~~~~--~~~tiii~sh~~~~~~~~~d 166 (180)
T cd03214 121 LDEPTSHLDIAHQIELLELLRRLARE--RGKTVVMVLHDLNLAARYAD 166 (180)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999987641 14899999999998766555
No 270
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.3e-38 Score=328.41 Aligned_cols=196 Identities=24% Similarity=0.308 Sum_probs=158.6
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCcceEEECCEeCCCCCHHHHhc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL--YEPTNGQILIDGFPIKEVDIKWLRG 576 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl--~~p~~G~I~idG~di~~~~~~~lR~ 576 (709)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||.++.+++....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999973 4699999999999999999999999999999999998 6899999999999998887766655
Q ss_pred -ceEEEcccCccccc-CHHHHhccCCCC--------CCC----HHHHHHHHHHHhhHH-HHHcCCCCcccccCCCCCChH
Q 005203 577 -RIGFVGQEPKLFRM-DISSNISYGCTQ--------DIK----QQDIEWAAKQAYAHD-FIMSLPSGYETLVDDDLLSGG 641 (709)
Q Consensus 577 -~I~~V~Qd~~LF~g-TI~eNI~~g~~~--------~~~----~e~i~~aa~~a~l~d-~I~~LP~GydT~vGe~~LSGG 641 (709)
.+++++|++.+|.+ |+.+|+.++... +.+ .+++.++++..++.+ .. +..++ ..||||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~-~~LSgG 155 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFL-------SRNVN-EGFSGG 155 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhh-------ccccc-cCCCHH
Confidence 48999999999986 689998764210 111 123344444444431 11 11111 149999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhh-cC
Q 005203 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALS-FD 708 (709)
Q Consensus 642 QkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~-~~ 708 (709)
||||++|||||+++|++|||||||++||+++.+.+.+.|+++.+. ++|+|+|||+++.+..- +|
T Consensus 156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~---g~tii~~tH~~~~~~~~~~d 220 (252)
T CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTS---ENSIILITHYQRLLDYIKPD 220 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHHhhhCC
Confidence 999999999999999999999999999999999999999887642 58999999999987653 45
No 271
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.7e-38 Score=329.36 Aligned_cols=199 Identities=29% Similarity=0.413 Sum_probs=158.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEe-----CCCCCHHH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFP-----IKEVDIKW 573 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~d-----i~~~~~~~ 573 (709)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.+ +..++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999974 468999999999999999999999999999999999999999999999988 76666543
Q ss_pred ----HhcceEEEcccCcc---cccCHHHHhccCC--CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHH
Q 005203 574 ----LRGRIGFVGQEPKL---FRMDISSNISYGC--TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQ 642 (709)
Q Consensus 574 ----lR~~I~~V~Qd~~L---F~gTI~eNI~~g~--~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQ 642 (709)
+++.|+|++|++.+ +..|+.||+.+.. ....+..+ ....++++++.++.+ ++.... ..|||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~l~~l~l~-~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGN-----IRAAAHDWLEEVEID-PTRIDDLPRAFSGGM 153 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHH-----HHHHHHHHHHHcCCC-hhhhhcCchhcCHHH
Confidence 34679999999852 3468889986421 00111111 113445666666432 133333 4899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 643 kQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||++|||||+++|++|+|||||++||+++.+.+.+.|+++.++ .+.|+|+|||+++.+...+|
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~vsH~~~~~~~~~d 217 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD--LGLAVIIVTHDLGVARLLAQ 217 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcC
Confidence 99999999999999999999999999999999999999886431 25899999999998876665
No 272
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=5.1e-38 Score=316.19 Aligned_cols=169 Identities=30% Similarity=0.417 Sum_probs=146.1
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCcceEEECCEeCCCCCHHHH-hc
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL--YEPTNGQILIDGFPIKEVDIKWL-RG 576 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl--~~p~~G~I~idG~di~~~~~~~l-R~ 576 (709)
++++||+++|++ .++++|+||+|++||.+||+||||||||||+++|+|+ ++|++|+|.+||+++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999973 4699999999999999999999999999999999999 58999999999999998876654 56
Q ss_pred ceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCC
Q 005203 577 RIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (709)
Q Consensus 577 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p 656 (709)
.++||+|++.+|.++..+|.. ... ...||||||||++|||||+++|
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l-------------------------~~~---------~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL-------------------------RYV---------NEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred cEEEeecChhhccCccHHHHH-------------------------hhc---------cccCCHHHHHHHHHHHHHhcCC
Confidence 699999999998765433322 001 1369999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh-hcC
Q 005203 657 TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL-SFD 708 (709)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~-~~~ 708 (709)
++|+|||||++||+++...+.+.|+++.++ ++|+|++||+++.+.. .+|
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~---~~tiii~sh~~~~~~~~~~d 173 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREE---GKSVLIITHYQRLLDYIKPD 173 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHC---CCEEEEEecCHHHHHHhhCC
Confidence 999999999999999999999999988642 5899999999997764 454
No 273
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-38 Score=360.41 Aligned_cols=197 Identities=28% Similarity=0.458 Sum_probs=160.9
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH-HHHhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI-KWLRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~-~~lR~~ 577 (709)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999974 469999999999999999999999999999999999999999999999999876543 457889
Q ss_pred eEEEcccCccccc-CHHHHhccCCCC---C-CCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHH
Q 005203 578 IGFVGQEPKLFRM-DISSNISYGCTQ---D-IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIAR 650 (709)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~~---~-~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLAR 650 (709)
||||+|++.+|.+ |+.||+.++... . .+.++..+ .+.+.++.+ |++..... ..||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999999875 999999986310 1 12222111 223334433 22222222 479999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+++|++|||||||++||+++.+.+.+.|+++.+. |+|+|+|||+++.+..-+|
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~---g~tiiiitHd~~~~~~~~d 208 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE---GRVILYVSHRMEEIFALCD 208 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999987642 6899999999998877666
No 274
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.7e-38 Score=325.21 Aligned_cols=182 Identities=28% Similarity=0.414 Sum_probs=146.9
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEc-ccCccc-ccCH
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVG-QEPKLF-RMDI 592 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~-Qd~~LF-~gTI 592 (709)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ....+|+.++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-RRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc-cchhhcccEEEEcCCccccCCCCcH
Confidence 469999999999999999999999999999999999999999999999998765 3356788999997 667776 6799
Q ss_pred HHHhccCCC-CCCCHHHH----HHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 005203 593 SSNISYGCT-QDIKQQDI----EWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSA 667 (709)
Q Consensus 593 ~eNI~~g~~-~~~~~e~i----~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSa 667 (709)
+||+.+... ...+.++. .++++..++.+ ..|+.+ ..||||||||++|||||+.+|++|||||||++
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~--~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 183 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEE-------LLDTPV--RQLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-------HhcCCh--hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 999976421 12233333 23333333322 233332 36999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 668 LDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 668 LD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+++.+.+.+.|+++.++ .++|+|+|||+++.+...+|
T Consensus 184 LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d 222 (236)
T cd03267 184 LDVVAQENIRNFLKEYNRE--RGTTVLLTSHYMKDIEALAR 222 (236)
T ss_pred CCHHHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHHHhCC
Confidence 9999999999999987532 25899999999998876666
No 275
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.7e-38 Score=357.26 Aligned_cols=195 Identities=27% Similarity=0.382 Sum_probs=163.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHh-cc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLR-GR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR-~~ 577 (709)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4999999999973 4699999999999999999999999999999999999999999999999999887766654 56
Q ss_pred eEEEcccCccccc-CHHHHhccCCCC-CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccC
Q 005203 578 IGFVGQEPKLFRM-DISSNISYGCTQ-DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~~-~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~ 655 (709)
||||+|++.+|.. |++||+.++... ...++++.++++..++.++. +..+ ..||||||||++|||||+++
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~--~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL-------DSSA--GSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc-------cCCh--hhCCHHHHHHHHHHHHHHcC
Confidence 9999999998875 999999987321 11234455555555443221 1111 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 656 PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|||||||++||+++...+.+.|+++.+. |+|+|+|||+++.+..-+|
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~---g~tiiivtHd~~~~~~~~d 208 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQ---GVGIVFISHKLPEIRQLAD 208 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999988643 6899999999998877666
No 276
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-38 Score=360.02 Aligned_cols=197 Identities=27% Similarity=0.435 Sum_probs=160.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHH-Hhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~-lR~~ 577 (709)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+... .|+.
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 3899999999973 46999999999999999999999999999999999999999999999999998877654 4567
Q ss_pred eEEEcccCccccc-CHHHHhccCCCC-----C---CCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHH
Q 005203 578 IGFVGQEPKLFRM-DISSNISYGCTQ-----D---IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRI 646 (709)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~~-----~---~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRI 646 (709)
|+||+|++.+|.. |++||+.++... . .+.++..+ .+.+.+..+ |++..... .+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 9999999998875 999999875210 0 11111111 122333322 23222222 47999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 647 aLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||+++|++||||||||+||+.+...+.+.|+++.+. |+|+|+|||+++.+..-+|
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~---g~tiiivsHd~~~~~~~~d 213 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE---GTAIVYISHKLAEIRRICD 213 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999999988643 6899999999998887666
No 277
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-38 Score=359.78 Aligned_cols=197 Identities=25% Similarity=0.416 Sum_probs=161.0
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CcceEEECCEeCCCCCHHH-Hh
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP--TNGQILIDGFPIKEVDIKW-LR 575 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p--~~G~I~idG~di~~~~~~~-lR 575 (709)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.+||.++...+... +|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 3899999999963 4699999999999999999999999999999999999996 8999999999998776553 56
Q ss_pred cceEEEcccCcccc-cCHHHHhccCCCC----CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHH
Q 005203 576 GRIGFVGQEPKLFR-MDISSNISYGCTQ----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAI 648 (709)
Q Consensus 576 ~~I~~V~Qd~~LF~-gTI~eNI~~g~~~----~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaL 648 (709)
+.||||+|++.+|. .|++|||.++... ..+.++..+ .+.+.+..+ |++..... ..||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 88999999999886 4999999886320 112222211 123333333 23222222 4799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+.+|++||||||||+||+++...+.+.|+++.+. ++|+|+|||+++.+...+|
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~---~~tvi~~tH~~~~~~~~~d 211 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH---GIACIYISHKLNEVKAISD 211 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCcHHHHHHhcC
Confidence 99999999999999999999999999999999888542 6899999999998877666
No 278
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=6.5e-38 Score=322.18 Aligned_cols=175 Identities=34% Similarity=0.478 Sum_probs=144.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccc-cCHHHHh
Q 005203 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR-MDISSNI 596 (709)
Q Consensus 518 L~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~-gTI~eNI 596 (709)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. .+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-----~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD-----RMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-----heEEecCcccCCCCCHHHHH
Confidence 5799999999999999999999999999999999999999999999998765432 489999999997 6999999
Q ss_pred ccCCC---CCCCHH----HHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 005203 597 SYGCT---QDIKQQ----DIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALD 669 (709)
Q Consensus 597 ~~g~~---~~~~~e----~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD 669 (709)
.++.. ...+++ ++.++++..++.+...+.| ..||||||||++|||||+++|++|||||||++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 146 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP---------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence 87410 122322 3445555555544333222 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 670 AESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 670 ~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+.+.+.+.+.|+++.++ .++|+|+|||+++.+..-+|
T Consensus 147 ~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d 183 (230)
T TIGR01184 147 ALTRGNLQEELMQIWEE--HRVTVLMVTHDVDEALLLSD 183 (230)
T ss_pred HHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcC
Confidence 99999999999887532 25899999999998876666
No 279
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5.9e-38 Score=357.61 Aligned_cols=197 Identities=27% Similarity=0.394 Sum_probs=160.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHH-Hhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~-lR~~ 577 (709)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++...+... .|+.
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 46999999999999999999999999999999999999999999999999987665444 4678
Q ss_pred eEEEcccCcccc-cCHHHHhccCCCC-----CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHH
Q 005203 578 IGFVGQEPKLFR-MDISSNISYGCTQ-----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIA 649 (709)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~~-----~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLA 649 (709)
|+||+|++.+|. -|++||+.++... ..+.++..+ .+.+.++.+ |++..... ..||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 999999998886 5999999986320 112222111 122333332 23222222 47999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 650 RAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 650 RALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||+.+|++|||||||++||+++.+.+.+.|+++.+. +.|+|+|||+++.+...+|
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~---~~tvii~sHd~~~~~~~~d 209 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ---GRGIVYISHRLKEIFEICD 209 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999988543 6899999999998887776
No 280
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.5e-37 Score=323.16 Aligned_cols=189 Identities=23% Similarity=0.349 Sum_probs=156.0
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
++++||++. .+|+|+||+|++||+++|+||||||||||+++|+|++++ +|+|.+||.++.+.+...+++.++
T Consensus 1 ~~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~ 72 (248)
T PRK03695 1 MQLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRA 72 (248)
T ss_pred Ccccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheE
Confidence 357788884 179999999999999999999999999999999999964 899999999999888888888999
Q ss_pred EEcccCc-ccccCHHHHhccCCCCCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcc
Q 005203 580 FVGQEPK-LFRMDISSNISYGCTQDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 580 ~V~Qd~~-LF~gTI~eNI~~g~~~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr 654 (709)
||+|++. .+..|++||+.++.....+ ++++.++++..++.+...+.+ ..||||||||++|||||++
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSV---------NQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred EecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHhc
Confidence 9999985 5578999999987431122 233445555555443332211 4799999999999999997
Q ss_pred -------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 655 -------DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 655 -------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++|||||||++||+++...+.+.|+++.++ ++|+|+|||+++.+..-+|
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~---~~tvi~~sH~~~~~~~~~d 201 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ---GIAVVMSSHDLNHTLRHAD 201 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHHHhCC
Confidence 67999999999999999999999999887642 5899999999998877666
No 281
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.9e-37 Score=352.50 Aligned_cols=191 Identities=21% Similarity=0.244 Sum_probs=165.7
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 899999999974 35999999999999999999999999999999999999999999999999887777777888899
Q ss_pred EEcccCcc---------cccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 580 FVGQEPKL---------FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 580 ~V~Qd~~L---------F~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
+|+|++.+ +..|++||+.++. ..++++.++++..++.+.....| ..||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV---KDPARCEQLAQQFGITALLDRRF---------KYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch---hHHHHHHHHHHHcCCHhhhhCCc---------ccCCHHHHHHHHHHH
Confidence 99998753 2468999987652 23567777777777765544333 359999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+++|++|+||||||+||+++.+.+.+.|+++.++ |+|+|+|||+++.+...+|
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~---g~tvii~tH~~~~~~~~~d 203 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS---GITLVLVLNRFDEIPDFVQ 203 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHhhCC
Confidence 999999999999999999999999999999988643 6899999999998887776
No 282
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-37 Score=360.43 Aligned_cols=199 Identities=30% Similarity=0.434 Sum_probs=162.8
Q ss_pred cEEEEEEEEEcCCCC--------CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC
Q 005203 499 RIDFVDVSFRYSSRE--------MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD 570 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~--------~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~ 570 (709)
-++++||+++|+.+. ..++|+|+||+|++||++|||||||||||||+|+|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996310 146999999999999999999999999999999999999999999999999998775
Q ss_pred HH---HHhcceEEEcccC--cccc-cCHHHHhccCCC-CC-----CCHHHHHHHHHHHhhH-HHHHcCCCCcccccCCCC
Q 005203 571 IK---WLRGRIGFVGQEP--KLFR-MDISSNISYGCT-QD-----IKQQDIEWAAKQAYAH-DFIMSLPSGYETLVDDDL 637 (709)
Q Consensus 571 ~~---~lR~~I~~V~Qd~--~LF~-gTI~eNI~~g~~-~~-----~~~e~i~~aa~~a~l~-d~I~~LP~GydT~vGe~~ 637 (709)
.. .+|++|+||+|++ .++. .|+.||+.+... .. ...+++.++++..++. +...+.| ..
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~---------~~ 463 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP---------HE 463 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc---------cc
Confidence 43 4678999999998 3664 699999975310 01 1123455566666653 3333333 36
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 638 LSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 638 LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||||||++|||||+.+|++||||||||+||..+.+.|.+.|+++.++ .+.|+|+|||+++.+..-+|
T Consensus 464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~--~g~tvi~isHdl~~v~~~~d 532 (623)
T PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD--FGIAYLFISHDMAVVERISH 532 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999887642 25899999999999887666
No 283
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-37 Score=351.25 Aligned_cols=194 Identities=26% Similarity=0.367 Sum_probs=159.1
Q ss_pred EEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH-HHHhcceEE
Q 005203 502 FVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI-KWLRGRIGF 580 (709)
Q Consensus 502 ~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~-~~lR~~I~~ 580 (709)
++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+. ..+|+.++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4699999973 469999999999999999999999999999999999999999999999999976554 456788999
Q ss_pred EcccCcccc-cCHHHHhccCCCC--C--CCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhc
Q 005203 581 VGQEPKLFR-MDISSNISYGCTQ--D--IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 581 V~Qd~~LF~-gTI~eNI~~g~~~--~--~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALl 653 (709)
|+|++.+|. .|++||+.++... . .+.++..+ .+.+.+..+ |++..... ..||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998775 6999999876320 1 12222221 233444443 44433333 489999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++|||||||++||+++.+.+.+.|+++.+. ++|+|+|||+++.+..-||
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~---g~tvii~tH~~~~~~~~~d 202 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER---GCGIVYISHKMEEIFQLCD 202 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHHHhCC
Confidence 999999999999999999999999999887643 6899999999998877776
No 284
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.6e-37 Score=352.35 Aligned_cols=196 Identities=26% Similarity=0.435 Sum_probs=159.7
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CcceEEECCEeCCCCCHHH-Hhc
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP--TNGQILIDGFPIKEVDIKW-LRG 576 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p--~~G~I~idG~di~~~~~~~-lR~ 576 (709)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||+++...+... .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 4699999999999999999999999999999999999997 7999999999998777544 467
Q ss_pred ceEEEcccCcccc-cCHHHHhccCCCCC-----CCHHHHHHHHHHHhhHHHHHcCCCCcccccCC---CCCChHHHHHHH
Q 005203 577 RIGFVGQEPKLFR-MDISSNISYGCTQD-----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD---DLLSGGQKQRIA 647 (709)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~~-----~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe---~~LSGGQkQRIa 647 (709)
.||||+|++.+|. -|+.||+.++.... .+.++..+ .+++.++.+ |++....+ ..||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 8999999998886 49999998763200 12222211 223344433 22221111 379999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||+++|++|||||||++||+++.+.+.+.|+++.+. |+|+|+|||+++.+...+|
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~---g~tviiitHd~~~~~~~~d 209 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH---GVACVYISHKLNEVKAVCD 209 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEeCcHHHHHHhCC
Confidence 999999999999999999999999999999999988643 6899999999998887776
No 285
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=4.6e-37 Score=315.76 Aligned_cols=180 Identities=33% Similarity=0.424 Sum_probs=144.5
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC----CcceEEECCEeCCCCCHHHHhcceEEEcccCc-ccc--
Q 005203 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP----TNGQILIDGFPIKEVDIKWLRGRIGFVGQEPK-LFR-- 589 (709)
Q Consensus 517 vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p----~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~-LF~-- 589 (709)
+++|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.+||.++... +..++.|+||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999998754 233468999999995 343
Q ss_pred cCHHHHhccCC-----CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEe
Q 005203 590 MDISSNISYGC-----TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILD 662 (709)
Q Consensus 590 gTI~eNI~~g~-----~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILD 662 (709)
.|+.||+.+.. ....+++++.++++..++.+ + ++.... ..||||||||++|||||+++|++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 58999986431 10111234556666655531 1 122222 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 663 EATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 663 EaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||++||+++.+.+.+.|+++.++ .++|+|++||+++.+...+|
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d 194 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQL--FGTGILLITHDLGVVARIAD 194 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999987531 25899999999998876666
No 286
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.5e-36 Score=354.35 Aligned_cols=182 Identities=31% Similarity=0.469 Sum_probs=151.8
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC--cceEEECCEeCCCCCHHHHhcceEEEcccCcccc-cC
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT--NGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR-MD 591 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~--~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~-gT 591 (709)
+.+|+|+|+++++||.+||+||||||||||+++|+|+++|+ +|+|.+||+++. ...++++|||+|++.+|. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 56999999999999999999999999999999999999985 899999999974 245678999999999995 59
Q ss_pred HHHHhccCC----CCCCCHHHHHHHHHHHhhHHHHHc--CCCCcccccCC---CCCChHHHHHHHHHHHhccCCCEEEEe
Q 005203 592 ISSNISYGC----TQDIKQQDIEWAAKQAYAHDFIMS--LPSGYETLVDD---DLLSGGQKQRIAIARAILRDPTILILD 662 (709)
Q Consensus 592 I~eNI~~g~----~~~~~~e~i~~aa~~a~l~d~I~~--LP~GydT~vGe---~~LSGGQkQRIaLARALlr~p~ILILD 662 (709)
++|||.+.. +.+.++++..+. +++.++. |++..||.+|+ +.||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999998752 112344332221 2333333 44456999987 489999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhh-hhhhcC
Q 005203 663 EATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS-TALSFD 708 (709)
Q Consensus 663 EaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst-i~~~~~ 708 (709)
||||+||+.++..+.+.|+++.++ |+|+|+++|+++. +..-||
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~---g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQK---GKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhC---CCEEEEEecCCCHHHHHhhc
Confidence 999999999999999999988643 6999999999984 655555
No 287
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1e-36 Score=349.61 Aligned_cols=199 Identities=27% Similarity=0.404 Sum_probs=159.3
Q ss_pred cEEEEEEEEEcCCC-CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCCCCHH
Q 005203 499 RIDFVDVSFRYSSR-EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKEVDIK 572 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~-~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----~~G~I~idG~di~~~~~~ 572 (709)
-|+++||+++|++. .+.++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 38999999999732 124799999999999999999999999999999999999997 799999999999877654
Q ss_pred H---Hh-cceEEEcccCc--cc-ccCHHHHhccCC------CCCCCHHHHHHHHHHHhhHHH---HHcCCCCcccccCCC
Q 005203 573 W---LR-GRIGFVGQEPK--LF-RMDISSNISYGC------TQDIKQQDIEWAAKQAYAHDF---IMSLPSGYETLVDDD 636 (709)
Q Consensus 573 ~---lR-~~I~~V~Qd~~--LF-~gTI~eNI~~g~------~~~~~~e~i~~aa~~a~l~d~---I~~LP~GydT~vGe~ 636 (709)
. +| +.||||+|++. ++ ..|+.||+.+.. +....++++.++++..++.+. ..+.| .
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~---------~ 155 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP---------H 155 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC---------c
Confidence 3 34 57999999985 44 358999986421 101112445556666555321 12211 4
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 637 LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 637 ~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.||||||||++|||||+.+|++|+||||||+||+++.+.+.+.|+++.++ .++|+|+|||+++.+...+|
T Consensus 156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~d 225 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE--LNMGLLFITHNLSIVRKLAD 225 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh--cCCeEEEEcCcHHHHHHhcC
Confidence 69999999999999999999999999999999999999999999987532 25899999999998876665
No 288
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=9.5e-37 Score=312.34 Aligned_cols=183 Identities=25% Similarity=0.317 Sum_probs=143.6
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
+.++|++.+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++... ...++
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~ 94 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG 94 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc
Confidence 667788888863 5799999999999999999999999999999999999999999999999986421 11111
Q ss_pred EEcccCcccccCHHHHhccCCC-CCCCHHH----HHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcc
Q 005203 580 FVGQEPKLFRMDISSNISYGCT-QDIKQQD----IEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~-~~~~~e~----i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr 654 (709)
...+.|++||+.++.. ...+.++ +.++++..++.+. .++.+ ..||||||||++|||||++
T Consensus 95 ------~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~--~~LSgG~~qrv~laral~~ 159 (224)
T cd03220 95 ------FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF-------IDLPV--KTYSSGMKARLAFAIATAL 159 (224)
T ss_pred ------CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-------hhCCh--hhCCHHHHHHHHHHHHHhc
Confidence 2246799999987531 0122222 3333333333322 23332 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 655 DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++|||||||++||+++.+.+.+.|+++.++ ++|+|+|||+++.+...+|
T Consensus 160 ~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~---~~tiii~sH~~~~~~~~~d 210 (224)
T cd03220 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ---GKTVILVSHDPSSIKRLCD 210 (224)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999887542 5899999999998876665
No 289
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=354.07 Aligned_cols=200 Identities=26% Similarity=0.403 Sum_probs=158.1
Q ss_pred cEEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC----------
Q 005203 499 RIDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK---------- 567 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~---------- 567 (709)
-|+++||+++|+... ..++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 589999999996421 247999999999999999999999999999999999999999999999998552
Q ss_pred CCCHH---HHh-cceEEEcccC--cccc-cCHHHHhccCCC--CCCCH----HHHHHHHHHHhhHHHHHcCCCCcccccC
Q 005203 568 EVDIK---WLR-GRIGFVGQEP--KLFR-MDISSNISYGCT--QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVD 634 (709)
Q Consensus 568 ~~~~~---~lR-~~I~~V~Qd~--~LF~-gTI~eNI~~g~~--~~~~~----e~i~~aa~~a~l~d~I~~LP~GydT~vG 634 (709)
+.+.. .+| +.||||+|+| .++. -|+.|||.++.. ...+. +++.++++..++.+. +....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 22322 344 5799999998 5775 599999987411 01122 344555555554210 11112
Q ss_pred C--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 635 D--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 635 e--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
. ..||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.++ .|+|+|+|||+++.+..-+|
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~--~g~tvi~itHdl~~~~~~ad 237 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE--MSMGVIFITHDMGVVAEIAD 237 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCC
Confidence 2 369999999999999999999999999999999999999999999988632 25899999999998877666
No 290
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1e-36 Score=311.84 Aligned_cols=169 Identities=25% Similarity=0.417 Sum_probs=143.3
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcc---cccCHHHHhccC
Q 005203 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKL---FRMDISSNISYG 599 (709)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~L---F~gTI~eNI~~g 599 (709)
|+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. ..|+.++||+|++.+ |+.|+.||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998864 357889999999987 568999999765
Q ss_pred C---------CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 005203 600 C---------TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDA 670 (709)
Q Consensus 600 ~---------~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~ 670 (709)
. +...+++++.++++..++.++....| ..||||||||++|||||+++|++|||||||++||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV---------GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 2 10122356777888887765543322 35999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 671 ESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 671 ~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.+.+.+.+.|+++.++ ++|+|+|||+++.+..-+|
T Consensus 147 ~~~~~l~~~l~~~~~~---~~tvii~sH~~~~~~~~~d 181 (223)
T TIGR03771 147 PTQELLTELFIELAGA---GTAILMTTHDLAQAMATCD 181 (223)
T ss_pred HHHHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHhCC
Confidence 9999999999987642 5899999999998877666
No 291
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-37 Score=348.28 Aligned_cols=200 Identities=26% Similarity=0.393 Sum_probs=160.0
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCcceEEECCEeCCCCCH-HHHhc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-PTNGQILIDGFPIKEVDI-KWLRG 576 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-p~~G~I~idG~di~~~~~-~~lR~ 576 (709)
-|+++||+++|+.+.+.++|+|+||+|++||++||+||||||||||+|+|+|+++ |++|+|.+||.++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999963212469999999999999999999999999999999999999 599999999999875543 45678
Q ss_pred ceEEEcccC---ccc-ccCHHHHhccCCCCC------CCHHHHHHHHHHHhhHHHHHcCCCCccc-ccCC--CCCChHHH
Q 005203 577 RIGFVGQEP---KLF-RMDISSNISYGCTQD------IKQQDIEWAAKQAYAHDFIMSLPSGYET-LVDD--DLLSGGQK 643 (709)
Q Consensus 577 ~I~~V~Qd~---~LF-~gTI~eNI~~g~~~~------~~~e~i~~aa~~a~l~d~I~~LP~GydT-~vGe--~~LSGGQk 643 (709)
.|+||+|++ .+| ..|+.||+.++.... .+.++ ....+++.++.+ |++. .... ..||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 355 469999998752100 11111 112344555554 3332 1222 48999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+. |+|+|+|||+++.+..-||
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~---g~tvi~~sHd~~~~~~~~d 473 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ---GVAIIVISSELPEVLGLSD 473 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC---CCEEEEECCCHHHHHHhCC
Confidence 9999999999999999999999999999999999999988643 6899999999998877666
No 292
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-37 Score=348.57 Aligned_cols=195 Identities=24% Similarity=0.408 Sum_probs=156.5
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH-HHHhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI-KWLRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~-~~lR~~ 577 (709)
-|+++|+++.|. .+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 499999999762 38999999999999999999999999999999999999999999999999876543 456788
Q ss_pred eEEEcccC---cccc-cCHHHHhccCCCCC----------CCHHHHHHHHHHHhhHHHHHcCCCCcc-cccCC--CCCCh
Q 005203 578 IGFVGQEP---KLFR-MDISSNISYGCTQD----------IKQQDIEWAAKQAYAHDFIMSLPSGYE-TLVDD--DLLSG 640 (709)
Q Consensus 578 I~~V~Qd~---~LF~-gTI~eNI~~g~~~~----------~~~e~i~~aa~~a~l~d~I~~LP~Gyd-T~vGe--~~LSG 640 (709)
||||+|++ .+|. -|+.||+.++.... .+.++ ....+.+.++.+ |++ -.... ..|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD-----EQRTAENQRELL--ALKCHSVNQNITELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHH-----HHHHHHHHHHhc--CCCCCCccCccccCCh
Confidence 99999984 5775 59999998752100 01111 111233444443 332 11222 47999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 641 GQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 641 GQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||++|||||+++|++||||||||+||+.+.+.+.+.|+++.+. |.|+|+|||+++.+..-||
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~---g~tvi~vsHd~~~~~~~~d 477 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD---GKVILMVSSELPEIITVCD 477 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC---CCEEEEEcCCHHHHHhhCC
Confidence 9999999999999999999999999999999999999999987643 6899999999998877666
No 293
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.1e-36 Score=349.41 Aligned_cols=198 Identities=31% Similarity=0.480 Sum_probs=158.9
Q ss_pred cEEEEEEEEEcCCC--------CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC
Q 005203 499 RIDFVDVSFRYSSR--------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD 570 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~--------~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~ 570 (709)
-|+++||+++|+.. .+.++|+|+||+|++||++||+||||||||||+|+|+|++ |++|+|.+||.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 48999999999631 1257999999999999999999999999999999999999 58999999999997766
Q ss_pred HH---HHhcceEEEcccC--cccc-cCHHHHhccCCC---CCCC----HHHHHHHHHHHhhH-HHHHcCCCCcccccCCC
Q 005203 571 IK---WLRGRIGFVGQEP--KLFR-MDISSNISYGCT---QDIK----QQDIEWAAKQAYAH-DFIMSLPSGYETLVDDD 636 (709)
Q Consensus 571 ~~---~lR~~I~~V~Qd~--~LF~-gTI~eNI~~g~~---~~~~----~e~i~~aa~~a~l~-d~I~~LP~GydT~vGe~ 636 (709)
.. .+|+.||||+|++ .+|. .|+.||+.++.. ...+ ++++.++++..++. +...+-| .
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~ 424 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYP---------A 424 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCC---------c
Confidence 43 3578899999997 3665 599999987411 0011 23344444444442 2222211 4
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 637 LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 637 ~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.++ .++|+|+|||+++.+..-+|
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~vsHd~~~~~~~~d 494 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK--HQLAYLFISHDLHVVRALCH 494 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHHhcC
Confidence 69999999999999999999999999999999999999999999987532 25899999999998877666
No 294
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.7e-36 Score=347.17 Aligned_cols=202 Identities=26% Similarity=0.435 Sum_probs=156.7
Q ss_pred cEEEEEEEEEcCC--CCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEEC-CEe---CCCCC--
Q 005203 499 RIDFVDVSFRYSS--REMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILID-GFP---IKEVD-- 570 (709)
Q Consensus 499 ~I~~~nVsF~Y~~--~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~id-G~d---i~~~~-- 570 (709)
-|+++||+++|++ ....++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4999999999963 112479999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhcceEEEcccCcccc-cCHHHHhccCCCCCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHH
Q 005203 571 -IKWLRGRIGFVGQEPKLFR-MDISSNISYGCTQDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQ 642 (709)
Q Consensus 571 -~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQ 642 (709)
...+|+.||||+|++.+|. .|+.||+.++..-..+ ++++.++++..++.+. ..+..... ..|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHH
Confidence 2356778999999998887 5999999863110111 2233344444443210 00001122 4799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 643 kQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||++|||||+.+|++|||||||++||+++.+.+.+.|+++.++ .+.|+|+|||+++.+...+|
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vsHd~~~~~~~~d 496 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE--MEQTFIIVSHDMDFVLDVCD 496 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999999999887532 25899999999998877666
No 295
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.7e-36 Score=347.22 Aligned_cols=195 Identities=24% Similarity=0.374 Sum_probs=155.7
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCcceEEEC---------------
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY--EPTNGQILID--------------- 562 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~--~p~~G~I~id--------------- 562 (709)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999963 46999999999999999999999999999999999996 7999999997
Q ss_pred --------CEeCC-------CCC---HHHHhcceEEEccc-Ccccc-cCHHHHhccCCC-CCCC----HHHHHHHHHHHh
Q 005203 563 --------GFPIK-------EVD---IKWLRGRIGFVGQE-PKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAY 617 (709)
Q Consensus 563 --------G~di~-------~~~---~~~lR~~I~~V~Qd-~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~ 617 (709)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.++.. ...+ ++++.++++..+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 33321 111 13467889999998 67776 599999986411 0112 234555666666
Q ss_pred hHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEe
Q 005203 618 AHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIA 697 (709)
Q Consensus 618 l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIA 697 (709)
+.+...+.| ..||||||||++|||||+.+|++|+||||||+||+++.+.+.+.|+++.++ .|+|+|+||
T Consensus 158 l~~~~~~~~---------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tviivt 226 (520)
T TIGR03269 158 LSHRITHIA---------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA--SGISMVLTS 226 (520)
T ss_pred ChhhhhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEe
Confidence 554433322 469999999999999999999999999999999999999999999887532 258999999
Q ss_pred cChhhhhhhcC
Q 005203 698 HRLISTALSFD 708 (709)
Q Consensus 698 HRlsti~~~~~ 708 (709)
|+++.+..-+|
T Consensus 227 Hd~~~~~~~~d 237 (520)
T TIGR03269 227 HWPEVIEDLSD 237 (520)
T ss_pred CCHHHHHHhcC
Confidence 99998876665
No 296
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=4.7e-36 Score=351.02 Aligned_cols=197 Identities=31% Similarity=0.482 Sum_probs=163.0
Q ss_pred cEEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHH---
Q 005203 499 RIDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL--- 574 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~l--- 574 (709)
-|+++|++++|++.+ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999997421 2579999999999999999999999999999999999999999999999999998887654
Q ss_pred -hcceEEEcccCcccc-cCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005203 575 -RGRIGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (709)
Q Consensus 575 -R~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (709)
|+.++||+|++.+|. .|+.||+.+... ...+ ++++.++++..++.+.+.+.| ..|||||+||++
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~---------~~LS~Gq~qrv~ 154 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP---------SQLSGGQQQRVS 154 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCc---------ccCCHHHHHHHH
Confidence 678999999999996 599999986421 0111 223344444444444333322 479999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||+++|++|+|||||++||+++.+.+.+.|+++.+. ++|+|+|||+++.+.. +|
T Consensus 155 LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~---g~tilivsH~~~~~~~-~d 211 (648)
T PRK10535 155 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDR---GHTVIIVTHDPQVAAQ-AE 211 (648)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc---CCEEEEECCCHHHHHh-CC
Confidence 999999999999999999999999999999999987642 6899999999997754 66
No 297
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.1e-36 Score=344.80 Aligned_cols=205 Identities=23% Similarity=0.360 Sum_probs=158.9
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CcceEEECCEeCCCCCH-HHHhc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-TNGQILIDGFPIKEVDI-KWLRG 576 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-~~G~I~idG~di~~~~~-~~lR~ 576 (709)
-|+++|++++|+++.+..+|+|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999999532124699999999999999999999999999999999999996 89999999999865443 56788
Q ss_pred ceEEEcccC---cccc-cCHHHHhccCCCCCCCH-HHHHHHHHHHhhHHHHHcCCCCccc-ccCC--CCCChHHHHHHHH
Q 005203 577 RIGFVGQEP---KLFR-MDISSNISYGCTQDIKQ-QDIEWAAKQAYAHDFIMSLPSGYET-LVDD--DLLSGGQKQRIAI 648 (709)
Q Consensus 577 ~I~~V~Qd~---~LF~-gTI~eNI~~g~~~~~~~-e~i~~aa~~a~l~d~I~~LP~GydT-~vGe--~~LSGGQkQRIaL 648 (709)
+||||+|++ .+|. .|++||+.++....... ..+........+.+.++.+ |+.. .... ..||||||||++|
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL--KVKTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc--CccCCCccCccccCCHHHHHHHHH
Confidence 999999996 3665 69999998752100000 0000011112233444443 2221 1121 4799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+++|++|||||||++||+.+...+.+.|+++.+. +.|+|+|||+++.+..-+|
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~---g~tviivsHd~~~~~~~~d 471 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE---GVAIIVVSSELAEVLGLSD 471 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC---CCEEEEECCCHHHHHHhCC
Confidence 99999999999999999999999999999999888643 6899999999998887766
No 298
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.6e-36 Score=284.35 Aligned_cols=196 Identities=30% Similarity=0.432 Sum_probs=161.4
Q ss_pred cEEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH---HH
Q 005203 499 RIDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK---WL 574 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~---~l 574 (709)
-|++++++..-++.+ +-.||++|+|.|++||.+|||||||||||||+-+|.||-+|++|+|.+.|+++..++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 488889988876532 35799999999999999999999999999999999999999999999999999998854 44
Q ss_pred h-cceEEEcccCccc-ccCHHHHhccCCC----CCCCH-HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005203 575 R-GRIGFVGQEPKLF-RMDISSNISYGCT----QDIKQ-QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (709)
Q Consensus 575 R-~~I~~V~Qd~~LF-~gTI~eNI~~g~~----~~~~~-e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (709)
| +++|+|+|.-+|. +-|-.||..+-.. ...+. +.-.+-++.+|+.+-....| .+||||++||+|
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP---------~qLSGGEQQRVA 156 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP---------AQLSGGEQQRVA 156 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc---------cccCchHHHHHH
Confidence 4 5699999999987 7889999986321 01111 22334455555555444444 469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
||||+.-.|+||+-||||-+||.+|-.+|.+.+.++..+ .|.|.++|||+++...+
T Consensus 157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre--~G~TlVlVTHD~~LA~R 212 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE--RGTTLVLVTHDPQLAAR 212 (228)
T ss_pred HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh--cCceEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999887655 58999999999986543
No 299
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.3e-36 Score=353.96 Aligned_cols=199 Identities=25% Similarity=0.411 Sum_probs=162.8
Q ss_pred CcEEEEEEEEEcCCC------CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---cceEEECCEeCCC
Q 005203 498 GRIDFVDVSFRYSSR------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT---NGQILIDGFPIKE 568 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~------~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~---~G~I~idG~di~~ 568 (709)
.+++|.++. +++.. .++++|+|+|++|++||.+||+||||||||||+++|+|..+|. +|+|.+||.++.
T Consensus 16 ~~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~- 93 (617)
T TIGR00955 16 QDGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID- 93 (617)
T ss_pred ccchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-
Confidence 346666666 55322 1467999999999999999999999999999999999999885 899999999975
Q ss_pred CCHHHHhcceEEEcccCcccc-cCHHHHhccCCC----CCCCHHHHHHHHHHHhhHHHHHc--CCCCcccccCC----CC
Q 005203 569 VDIKWLRGRIGFVGQEPKLFR-MDISSNISYGCT----QDIKQQDIEWAAKQAYAHDFIMS--LPSGYETLVDD----DL 637 (709)
Q Consensus 569 ~~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~----~~~~~e~i~~aa~~a~l~d~I~~--LP~GydT~vGe----~~ 637 (709)
...+|+.+|||+|+|.+|. .|++|||.|+.. .+.+.++ +...+++.++. +++..||.+|+ +.
T Consensus 94 --~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~ 166 (617)
T TIGR00955 94 --AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKE-----KRERVDEVLQALGLRKCANTRIGVPGRVKG 166 (617)
T ss_pred --HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHHcCchhcCcCccCCCCCCCC
Confidence 4678999999999999995 599999987632 1222332 22334555554 44578999997 37
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh-hhhhhcC
Q 005203 638 LSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI-STALSFD 708 (709)
Q Consensus 638 LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls-ti~~~~~ 708 (709)
||||||||++|||||+++|++|+||||||+||+.+...+.+.|+++.+. |+|+|+++|+++ .+..-||
T Consensus 167 LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~---g~tvi~~~hq~~~~i~~~~D 235 (617)
T TIGR00955 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK---GKTIICTIHQPSSELFELFD 235 (617)
T ss_pred cCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhC---CCEEEEEeCCCCHHHHHHhc
Confidence 9999999999999999999999999999999999999999999998642 699999999996 4555555
No 300
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.8e-36 Score=332.94 Aligned_cols=199 Identities=33% Similarity=0.479 Sum_probs=164.1
Q ss_pred cEEEEEEEEEcCCC--------CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEe--CCC
Q 005203 499 RIDFVDVSFRYSSR--------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFP--IKE 568 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~--------~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~d--i~~ 568 (709)
-++++||+.+|..+ ....+++||||+|++||++||||+||||||||.++|+|+.+|++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 47899999999842 12568999999999999999999999999999999999999999999999977 333
Q ss_pred CCHHHHhcceEEEcccCccc---ccCHHHHhccCC----CC--CCCHHHHHHHHHHHhhHH-HHHcCCCCcccccCCCCC
Q 005203 569 VDIKWLRGRIGFVGQEPKLF---RMDISSNISYGC----TQ--DIKQQDIEWAAKQAYAHD-FIMSLPSGYETLVDDDLL 638 (709)
Q Consensus 569 ~~~~~lR~~I~~V~Qd~~LF---~gTI~eNI~~g~----~~--~~~~e~i~~aa~~a~l~d-~I~~LP~GydT~vGe~~L 638 (709)
-+...+|+++=+|+|||+-- ..||.++|+--- .. ....+++.+..++.++.+ +..+-| ..|
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP---------~el 430 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP---------HEL 430 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc---------hhc
Confidence 33557888999999999853 789999996311 10 111234666666666654 233333 369
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 639 SGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 639 SGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||||+||||||..+|++||+|||||+||+-+.+.|.+.|+++.++ -|.|.|+|||+++.++.-||
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e--~g~t~lfISHDl~vV~~i~d 498 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE--LGLTYLFISHDLAVVRYIAD 498 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH--hCCEEEEEeCCHHHHHhhCc
Confidence 999999999999999999999999999999999999999999988765 37999999999999988777
No 301
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.1e-36 Score=311.04 Aligned_cols=177 Identities=25% Similarity=0.338 Sum_probs=144.7
Q ss_pred EEcCCCCCCccceeeeEEec-----CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEE
Q 005203 507 FRYSSREMVPVLQHVNISVN-----PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFV 581 (709)
Q Consensus 507 F~Y~~~~~~~vL~~lsl~I~-----~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V 581 (709)
|+|++. .+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 689853 468999999997 68999999999999999999999999999999999984 69999
Q ss_pred cccCc-ccccCHHHHhccCCCCC-CCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEE
Q 005203 582 GQEPK-LFRMDISSNISYGCTQD-IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTIL 659 (709)
Q Consensus 582 ~Qd~~-LF~gTI~eNI~~g~~~~-~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~IL 659 (709)
+|++. .|.+|++||+.++.... ...+...++++..++.+...+.| ..||||||||++|||||+++|+++
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---------~~LSgGe~qrv~iaraL~~~p~ll 137 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREV---------PELSGGELQRVAIAACLSKDADIY 137 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99987 57899999998653211 11233445555555443322211 469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 660 ILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 660 ILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||++||+++...+.+.|+++.++ .++|+|+|||+++.+..-+|
T Consensus 138 llDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiiivsHd~~~~~~~~d 184 (246)
T cd03237 138 LLDEPSAYLDVEQRLMASKVIRRFAEN--NEKTAFVVEHDIIMIDYLAD 184 (246)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999987532 25899999999998876665
No 302
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.5e-36 Score=314.75 Aligned_cols=191 Identities=25% Similarity=0.324 Sum_probs=149.9
Q ss_pred EEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEE-----------ECCEeCCCCCH
Q 005203 503 VDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQIL-----------IDGFPIKEVDI 571 (709)
Q Consensus 503 ~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~-----------idG~di~~~~~ 571 (709)
.||+|+|++. .++|+|+| .+++||++||+||||||||||+|+|+|+++|++|+|. +||+++.+...
T Consensus 4 ~~~~~~y~~~--~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 4899999743 46999999 4999999999999999999999999999999999996 88999876643
Q ss_pred HHHhc--ceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005203 572 KWLRG--RIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (709)
Q Consensus 572 ~~lR~--~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (709)
...|. .+++++|++.++..++.+|+...-.....++++.++++..++.+...+.+ ..||||||||++||
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~la 151 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNI---------DQLSGGELQRVAIA 151 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 33333 37888887777665555555432111112355666666655543332211 47999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 650 RAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 650 RALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++++|++++||||||+||+++...+.+.|+++.+. ++|+|+|||+++.+..-+|
T Consensus 152 ral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~---~~tIIiiSHd~~~~~~~ad 207 (255)
T cd03236 152 AALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED---DNYVLVVEHDLAVLDYLSD 207 (255)
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc---CCEEEEEECCHHHHHHhCC
Confidence 9999999999999999999999999999999988643 5899999999998876666
No 303
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-35 Score=325.98 Aligned_cols=198 Identities=33% Similarity=0.476 Sum_probs=168.6
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH-HHhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK-WLRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~-~lR~~ 577 (709)
-++++|++.+|++ .++|+|+||++.+||++|++|+||||||||+|+|+|.|+|++|+|.+||++..-.++. ....-
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4889999999985 5799999999999999999999999999999999999999999999999999877665 45556
Q ss_pred eEEEcccCccc-ccCHHHHhccCCCCC-----CCHHHHHHHHHHHhhHHHHHcCCC--CcccccCCCCCChHHHHHHHHH
Q 005203 578 IGFVGQEPKLF-RMDISSNISYGCTQD-----IKQQDIEWAAKQAYAHDFIMSLPS--GYETLVDDDLLSGGQKQRIAIA 649 (709)
Q Consensus 578 I~~V~Qd~~LF-~gTI~eNI~~g~~~~-----~~~e~i~~aa~~a~l~d~I~~LP~--GydT~vGe~~LSGGQkQRIaLA 649 (709)
|+.|.||..|+ +-||+|||-+|+.+. .|..++.+.|+.+ +..+-. ..++.| .+||+||||-++||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~-----l~~lg~~~~~~~~v--~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAREL-----LARLGLDIDPDTLV--GDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHH-----HHHcCCCCChhhhh--hhCCHHHHHHHHHH
Confidence 99999999999 789999999997532 3445555544442 232211 134444 37999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcCC
Q 005203 650 RAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFDC 709 (709)
Q Consensus 650 RALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~~ 709 (709)
|||.++++|||||||||+|+....+.+.+.++++++. |.++|+||||++.+..-||.
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~---Gv~ii~ISHrl~Ei~~i~Dr 214 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQ---GVAIIYISHRLDEVFEIADR 214 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC---CCEEEEEcCcHHHHHHhcCE
Confidence 9999999999999999999999999999999999864 89999999999999887773
No 304
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.9e-36 Score=288.83 Aligned_cols=194 Identities=28% Similarity=0.517 Sum_probs=163.9
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
+++.+++.+|++. ...++||||+++.||+++|-||+|+||||+++.|.+|+.|++|+|++||.|... ++...|++||
T Consensus 2 l~v~~l~K~y~~~--v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccCH--HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 6889999999852 458999999999999999999999999999999999999999999999999886 6788999999
Q ss_pred EEcccCccc-ccCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 580 FVGQEPKLF-RMDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 580 ~V~Qd~~LF-~gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
+++-+.-|+ .-|.+|||.||.. .+.. +.++.+.-+.-++.|.+. +.+ .++|-|+|||++|||||.
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-------rRv--~~~S~G~kqkV~iARAlv 149 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-------RRV--GEFSTGMKQKVAIARALV 149 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-------HHH--hhhchhhHHHHHHHHHHh
Confidence 999777777 6799999998732 0111 233334444444444433 222 258999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++++||||||+||.-+.+.+.+-|++++. +|+++|+-||-++.+..-||
T Consensus 150 h~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~---egr~viFSSH~m~EvealCD 201 (245)
T COG4555 150 HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN---EGRAVIFSSHIMQEVEALCD 201 (245)
T ss_pred cCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc---CCcEEEEecccHHHHHHhhh
Confidence 99999999999999999999999999999875 37999999999999987776
No 305
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-35 Score=327.62 Aligned_cols=185 Identities=26% Similarity=0.337 Sum_probs=151.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.++++|++|+|++...+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999865445799999999999999999999999999999999999999999999999762
Q ss_pred EEEcccCccc-ccCHHHHhccCCC-CCCCHH----HHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 579 GFVGQEPKLF-RMDISSNISYGCT-QDIKQQ----DIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 579 ~~V~Qd~~LF-~gTI~eNI~~g~~-~~~~~e----~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
++.+++.++ ..|++|||.++.. ...+++ ++.++++..++.+++.+.| ..||||||||++|||||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~---------~~LSGGQrQRVaLArAL 158 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPV---------KTYSSGMKSRLGFAISV 158 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCc---------ccCCHHHHHHHHHHHHH
Confidence 122233333 3599999987421 122333 3445666677766655433 46999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+.+|++|||||||++||+.+...+.+.|+++.+. ++|+|+|||+++.+...||
T Consensus 159 ~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~---G~TIIIVSHdl~~i~~l~D 211 (549)
T PRK13545 159 HINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ---GKTIFFISHSLSQVKSFCT 211 (549)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhC---CCEEEEEECCHHHHHHhCC
Confidence 9999999999999999999999999999887532 6899999999998877776
No 306
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=3.3e-35 Score=280.60 Aligned_cols=135 Identities=33% Similarity=0.580 Sum_probs=125.9
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
++++||+++|++ .++++|+||++++||.++|+||||||||||+++|+|+++|++|+|.+||. ..++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 478999999974 36999999999999999999999999999999999999999999999994 4799
Q ss_pred EEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEE
Q 005203 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTIL 659 (709)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~IL 659 (709)
|++| |||||+||++|||||+++|+++
T Consensus 67 ~~~~------------------------------------------------------lS~G~~~rv~laral~~~p~il 92 (144)
T cd03221 67 YFEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLL 92 (144)
T ss_pred EEcc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 9999 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 660 ILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 660 ILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||++||.++...+.+.|+++. +|+|+|||+++.+...+|
T Consensus 93 llDEP~~~LD~~~~~~l~~~l~~~~------~til~~th~~~~~~~~~d 135 (144)
T cd03221 93 LLDEPTNHLDLESIEALEEALKEYP------GTVILVSHDRYFLDQVAT 135 (144)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHcC------CEEEEEECCHHHHHHhCC
Confidence 9999999999999999999998762 799999999998876655
No 307
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=337.60 Aligned_cols=192 Identities=25% Similarity=0.467 Sum_probs=155.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH-HHHhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI-KWLRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~-~~lR~~ 577 (709)
.|+++||++ ++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++...+. +.+|+.
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 489999984 36999999999999999999999999999999999999999999999999987664 356788
Q ss_pred eEEEcccC---ccc-ccCHHHHhccCCCCC-------CCHHHHHHHHHHHhhHHHHHcCCCCcc-cccCC--CCCChHHH
Q 005203 578 IGFVGQEP---KLF-RMDISSNISYGCTQD-------IKQQDIEWAAKQAYAHDFIMSLPSGYE-TLVDD--DLLSGGQK 643 (709)
Q Consensus 578 I~~V~Qd~---~LF-~gTI~eNI~~g~~~~-------~~~e~i~~aa~~a~l~d~I~~LP~Gyd-T~vGe--~~LSGGQk 643 (709)
||||+|++ .+| ..|++||+.++.... .+.++. ...+.+.+..+ |++ ..... ..||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999996 344 579999998752100 111111 12234445543 332 12222 47999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.++ |+|+|+|||+++.+..-+|
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~---g~tviivtHd~~~~~~~~d 463 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE---GLSIILVSSEMPEVLGMSD 463 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC---CCEEEEEcCCHHHHHhhCC
Confidence 9999999999999999999999999999999999999988643 6899999999998887776
No 308
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.4e-35 Score=367.00 Aligned_cols=196 Identities=25% Similarity=0.395 Sum_probs=164.7
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
..|+++||+++|+++ ++++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+.. +...+|+.
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 369999999999643 3579999999999999999999999999999999999999999999999999975 56778999
Q ss_pred eEEEcccCcccc-cCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005203 578 IGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (709)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (709)
|||++|++.+|. .|++|||.++.. ...+ ++++.+.++..++.+...+.| .+||||||||++||||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~---------~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEA---------QDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHH
Confidence 999999999996 599999987521 1122 234445555554433322211 4799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+.+|++|+||||||+||+.+.+.+.+.|+++++ |+|+|++||+++.+..-+|
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~----g~TIIltTHdmdea~~laD 1128 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRS----GRTIIMSTHHMDEADLLGD 1128 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhC----CCEEEEEECCHHHHHHhCC
Confidence 9999999999999999999999999999998853 5999999999998876665
No 309
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-35 Score=301.86 Aligned_cols=168 Identities=32% Similarity=0.501 Sum_probs=146.9
Q ss_pred cEEEEEEEEEcCCCC------CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH
Q 005203 499 RIDFVDVSFRYSSRE------MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK 572 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~------~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~ 572 (709)
-++++|++..|+... ...+++||||+|++||+++|||+|||||||+.++|+||++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 378999999997532 136899999999999999999999999999999999999999999999999988777
Q ss_pred HHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHH-HHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005203 573 WLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHD-FIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (709)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d-~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (709)
. +...+++.+.++.+|+.+ +..+-| ..||||||||++||||
T Consensus 82 ----------------------------~-~~~~~~v~elL~~Vgl~~~~~~ryP---------helSGGQrQRi~IARA 123 (268)
T COG4608 82 ----------------------------K-EERRERVLELLEKVGLPEEFLYRYP---------HELSGGQRQRIGIARA 123 (268)
T ss_pred ----------------------------h-hHHHHHHHHHHHHhCCCHHHhhcCC---------cccCchhhhhHHHHHH
Confidence 1 234678999999999766 444544 3599999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|.-+|++++.|||||+||.-.+++|.+.+..+.+. .+.|.++|||+++.+.--+|
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~--~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE--LGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH--hCCeEEEEEEEHHhhhhhcc
Confidence 99999999999999999999999999999888754 36999999999999887665
No 310
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-35 Score=305.93 Aligned_cols=185 Identities=21% Similarity=0.337 Sum_probs=146.1
Q ss_pred cEEEEEEEEEcCCC-----------------CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE
Q 005203 499 RIDFVDVSFRYSSR-----------------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI 561 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~-----------------~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~i 561 (709)
+|+++||+..|... ...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 56777776655431 1356999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEcccCccc-ccCHHHHhccCCC-CCCCHHHHH----HHHHHHhhHHHHHcCCCCcccccCC
Q 005203 562 DGFPIKEVDIKWLRGRIGFVGQEPKLF-RMDISSNISYGCT-QDIKQQDIE----WAAKQAYAHDFIMSLPSGYETLVDD 635 (709)
Q Consensus 562 dG~di~~~~~~~lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~-~~~~~e~i~----~aa~~a~l~d~I~~LP~GydT~vGe 635 (709)
||. ++++.|++.++ ..|+.||+.++.. ...+.++.. ++++..++.+++... -
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~ 141 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQP---------V 141 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC---------c
Confidence 995 45678887766 4699999986411 123344433 344444444433221 1
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 636 DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 636 ~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
..||||||||++||||++++|++|||||||++||+++.+.+.+.|.++.+. ++|+|+|||+++.+...+|
T Consensus 142 ~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~---g~tiIiisH~~~~i~~~~d 211 (264)
T PRK13546 142 KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ---NKTIFFVSHNLGQVRQFCT 211 (264)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC---CCEEEEEcCCHHHHHHHcC
Confidence 479999999999999999999999999999999999999999999887542 6899999999998765554
No 311
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3e-35 Score=367.32 Aligned_cols=196 Identities=25% Similarity=0.414 Sum_probs=163.1
Q ss_pred cEEEEEEEEEcCCC-CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCcceEEECCEeCCCCCHHHH
Q 005203 499 RIDFVDVSFRYSSR-EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE---PTNGQILIDGFPIKEVDIKWL 574 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~-~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~---p~~G~I~idG~di~~~~~~~l 574 (709)
.++++||+++|+.+ +++.+|+|+|++|+|||.+||+||||||||||+++|+|+.+ |++|+|.+||+|+. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 37999999999632 23679999999999999999999999999999999999998 78999999999985 257
Q ss_pred hcceEEEcccCc-ccccCHHHHhccCC----CCCCCHH----HHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHH
Q 005203 575 RGRIGFVGQEPK-LFRMDISSNISYGC----TQDIKQQ----DIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (709)
Q Consensus 575 R~~I~~V~Qd~~-LF~gTI~eNI~~g~----~~~~~~e----~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (709)
|+.+|||+|++. ++..|++||+.++. +.+.+++ ++.++++..++. +-.|+.+|+ .+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHHh
Confidence 899999999875 56789999998742 2122332 344555555443 346888986 48999999
Q ss_pred HHHHHHHHhccCCC-EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhh-hhcC
Q 005203 644 QRIAIARAILRDPT-ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTA-LSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~-ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~-~~~~ 708 (709)
||++|||||+.+|+ ||+||||||+||+.+...|.+.|+++.++ |+|+|+++|++++.. ..||
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~---g~tvI~t~H~~~~~~~~~~D 971 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH---GQAILCTIHQPSAILFEEFD 971 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc---CCEEEEEecCCCHHHHHhcC
Confidence 99999999999997 99999999999999999999999998643 699999999999743 4455
No 312
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=336.66 Aligned_cols=193 Identities=26% Similarity=0.382 Sum_probs=154.6
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC-HHHHhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-IKWLRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~-~~~lR~~ 577 (709)
.++++||+++ .+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++...+ ....|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999842 4899999999999999999999999999999999999999999999999987543 3456789
Q ss_pred eEEEcccCc---cc-ccCHHHHhccCCCCCC-------CHHHHHHHHHHHhhHHHHHcCCCCcc-cccCC--CCCChHHH
Q 005203 578 IGFVGQEPK---LF-RMDISSNISYGCTQDI-------KQQDIEWAAKQAYAHDFIMSLPSGYE-TLVDD--DLLSGGQK 643 (709)
Q Consensus 578 I~~V~Qd~~---LF-~gTI~eNI~~g~~~~~-------~~e~i~~aa~~a~l~d~I~~LP~Gyd-T~vGe--~~LSGGQk 643 (709)
|+|++|++. +| ..|+.||+.++..... +..+- ...+++.+..+ |++ ..... ..||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHH
Confidence 999999973 55 5899999987531110 11111 11233444443 332 11222 48999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+.+|++|||||||++||..+.+.+.+.|+++.+. |.|+|+|||+++.+..-+|
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~---g~tviivsHd~~~~~~~~d 464 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ---GVAVLFVSSDLPEVLGVAD 464 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC---CCEEEEECCCHHHHHhhCC
Confidence 9999999999999999999999999999999999999888643 6899999999999887766
No 313
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4.1e-35 Score=325.53 Aligned_cols=200 Identities=30% Similarity=0.424 Sum_probs=164.9
Q ss_pred cEEEEEEEEEcCCCCC-CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC----cceEEECCEeCCCCCHHH
Q 005203 499 RIDFVDVSFRYSSREM-VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT----NGQILIDGFPIKEVDIKW 573 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~-~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~----~G~I~idG~di~~~~~~~ 573 (709)
-++++|++..|..... .++++|+||+|++||++||||+|||||||+++.|+|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999975422 25999999999999999999999999999999999999998 899999999998888765
Q ss_pred Hh----cceEEEcccCc-cccc--CHHHHhc----cCCC--CCCCHHHHHHHHHHHhhHHHHHc--CCCCcccccCCCCC
Q 005203 574 LR----GRIGFVGQEPK-LFRM--DISSNIS----YGCT--QDIKQQDIEWAAKQAYAHDFIMS--LPSGYETLVDDDLL 638 (709)
Q Consensus 574 lR----~~I~~V~Qd~~-LF~g--TI~eNI~----~g~~--~~~~~e~i~~aa~~a~l~d~I~~--LP~GydT~vGe~~L 638 (709)
.| +.||+|+|||. .|+- ||.+-|+ .... .+...++..+.++.+++.+-... .| ..|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP---------heL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP---------HQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC---------ccc
Confidence 53 56999999975 5654 5555553 2211 12234566667777776554443 22 469
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcCC
Q 005203 639 SGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFDC 709 (709)
Q Consensus 639 SGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~~ 709 (709)
|||||||+.||+||..+|++||+||||.+||+.+.++|.+.|+++.++ .|.++|+|||++..++.-+|.
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e--~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE--LGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH--cCcEEEEEcCCHHHHHHhcCe
Confidence 999999999999999999999999999999999999999999998854 479999999999999988873
No 314
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-35 Score=285.13 Aligned_cols=189 Identities=28% Similarity=0.465 Sum_probs=154.5
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
+..+++|-+|++.+ ..+|+|+|++|++||.++++||||||||||+|++.|+.+|+.|+|.+||.+|..-+.+ =|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae-----rg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE-----RG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc-----ce
Confidence 56789999999764 6799999999999999999999999999999999999999999999999999876654 48
Q ss_pred EEcccCcccc-cCHHHHhccCCC-CCCCHH----HHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 580 FVGQEPKLFR-MDISSNISYGCT-QDIKQQ----DIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~-~~~~~e----~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
+|+|++-|+. -++.||+.||-. ..++++ ...+.+..+|+.|+=.+.+ -.||||||||+.|||||.
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i---------~qLSGGmrQRvGiARALa 148 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI---------WQLSGGMRQRVGIARALA 148 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccce---------EeecchHHHHHHHHHHhh
Confidence 9999999996 579999999842 122222 2223334444433321111 269999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
-+|+.|+||||.+|||+-|.+++++.|-.+-+. .|+.+++|||..+...+
T Consensus 149 ~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~--tgk~~lliTH~ieEAlf 198 (259)
T COG4525 149 VEPQLLLLDEPFGALDALTREQMQELLLDLWQE--TGKQVLLITHDIEEALF 198 (259)
T ss_pred cCcceEeecCchhhHHHHHHHHHHHHHHHHHHH--hCCeEEEEeccHHHHHh
Confidence 999999999999999999999999998654433 47999999999986543
No 315
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-35 Score=305.53 Aligned_cols=198 Identities=29% Similarity=0.437 Sum_probs=158.1
Q ss_pred EEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-C----CcceEEECCEeCCCCCHHH
Q 005203 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-P----TNGQILIDGFPIKEVDIKW 573 (709)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-p----~~G~I~idG~di~~~~~~~ 573 (709)
++++|++..|.... ...+++||||+|++||++||||+|||||||+.+.++|+++ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997532 2479999999999999999999999999999999999998 4 6799999999999999875
Q ss_pred Hh----cceEEEcccCcc-cc--cCH----HHHhccCCC---CCCCHHHHHHHHHHHhhHHH---HHcCCCCcccccCCC
Q 005203 574 LR----GRIGFVGQEPKL-FR--MDI----SSNISYGCT---QDIKQQDIEWAAKQAYAHDF---IMSLPSGYETLVDDD 636 (709)
Q Consensus 574 lR----~~I~~V~Qd~~L-F~--gTI----~eNI~~g~~---~~~~~e~i~~aa~~a~l~d~---I~~LP~GydT~vGe~ 636 (709)
+| +.||+|+|||.- |+ -|| .|=+..... .....++..+.++.+++.+- +.+-| .
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------h 152 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------H 152 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC---------c
Confidence 43 369999999853 22 122 233332110 00113456667777766542 22333 3
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 637 LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 637 ~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.||||||||+.||-||..+|++||-||||+|||..+.++|.+.|+++.++ .|.|+|+|||++..++.-+|
T Consensus 153 elSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e--~~~aiilITHDl~vva~~aD 222 (316)
T COG0444 153 ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE--KGTALILITHDLGVVAEIAD 222 (316)
T ss_pred ccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcc
Confidence 69999999999999999999999999999999999999999999999864 47999999999999998887
No 316
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.4e-35 Score=337.80 Aligned_cols=188 Identities=26% Similarity=0.365 Sum_probs=148.9
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999972 24699999999999999999999999999999999999999999999975 2469
Q ss_pred EEEcccCccccc-CHHHHhccCCC----------------CCCC---------HHHHHHHHHHH-------hhHHHHHcC
Q 005203 579 GFVGQEPKLFRM-DISSNISYGCT----------------QDIK---------QQDIEWAAKQA-------YAHDFIMSL 625 (709)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~----------------~~~~---------~e~i~~aa~~a-------~l~d~I~~L 625 (709)
|||+|++.+|+. |+.||+.++.. ...+ .+++.+.++.+ .+.+.+..+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999965 99999987521 0000 01111222111 122333332
Q ss_pred CCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 626 PSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 626 P~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
|++ .... ..||||||||++|||||+.+|++||||||||+||+++...+.+.|+++. .|+|+|||+++.+
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~------~tviiisHd~~~~ 223 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP------GTVVAVTHDRYFL 223 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC------CeEEEEeCCHHHH
Confidence 232 1121 4899999999999999999999999999999999999999999998763 5999999999988
Q ss_pred hhhcC
Q 005203 704 ALSFD 708 (709)
Q Consensus 704 ~~~~~ 708 (709)
...+|
T Consensus 224 ~~~~d 228 (556)
T PRK11819 224 DNVAG 228 (556)
T ss_pred HhhcC
Confidence 87766
No 317
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-35 Score=335.01 Aligned_cols=187 Identities=22% Similarity=0.430 Sum_probs=147.9
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..||
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999973 46999999999999999999999999999999999999999999999972 4699
Q ss_pred EEcccCcccc-cCHHHHhccCCCC---------------CCCHHH---HHHH----------HHHHhhHHHHHcCCCCcc
Q 005203 580 FVGQEPKLFR-MDISSNISYGCTQ---------------DIKQQD---IEWA----------AKQAYAHDFIMSLPSGYE 630 (709)
Q Consensus 580 ~V~Qd~~LF~-gTI~eNI~~g~~~---------------~~~~e~---i~~a----------a~~a~l~d~I~~LP~Gyd 630 (709)
||+|++.+|. -|++||+.++... ....+. +.+. .....+++.+..+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 9999998885 4999999875210 000000 0000 0012233444443 333
Q ss_pred cccC-C--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhc
Q 005203 631 TLVD-D--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSF 707 (709)
Q Consensus 631 T~vG-e--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~ 707 (709)
.... . ..||||||||++|||||+.+|++|+|||||++||+++...+.+.|++. +.|+|+|||+++.+..-+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~------~~tiiivsHd~~~~~~~~ 219 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNER------NSTMIIISHDRHFLNSVC 219 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC------CCeEEEEeCCHHHHHhhc
Confidence 2221 1 479999999999999999999999999999999999999999998642 489999999999887766
Q ss_pred C
Q 005203 708 D 708 (709)
Q Consensus 708 ~ 708 (709)
|
T Consensus 220 d 220 (530)
T PRK15064 220 T 220 (530)
T ss_pred c
Confidence 6
No 318
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-35 Score=301.79 Aligned_cols=195 Identities=34% Similarity=0.507 Sum_probs=168.9
Q ss_pred cEEEEEEEEEcCCCCC---------------------CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc
Q 005203 499 RIDFVDVSFRYSSREM---------------------VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG 557 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~---------------------~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G 557 (709)
.|+++||+.-|+.+++ .--++|+||+|+.||+..|.|-||||||||++++-||++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4778888777754321 1226799999999999999999999999999999999999999
Q ss_pred eEEECCEeCCCCCHHHHh----cceEEEcccCccc-ccCHHHHhccCCC-C----CCCHHHHHHHHHHHhhHHHHHcCCC
Q 005203 558 QILIDGFPIKEVDIKWLR----GRIGFVGQEPKLF-RMDISSNISYGCT-Q----DIKQQDIEWAAKQAYAHDFIMSLPS 627 (709)
Q Consensus 558 ~I~idG~di~~~~~~~lR----~~I~~V~Qd~~LF-~gTI~eNI~~g~~-~----~~~~e~i~~aa~~a~l~d~I~~LP~ 627 (709)
+|++||.|+..++.+++| ++++.|+|.--|| ..||.||..||-+ + ...+++..++++.+|+++|-.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999999999987764 5799999999999 7899999999853 1 2234667789999999999988886
Q ss_pred CcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 628 GYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 628 GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
. ||||++||+.|||||.-+|+||++|||.|||||--...+++-|.++.+. .++|+++|||++....
T Consensus 164 e---------LSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~--l~KTIvFitHDLdEAl 229 (386)
T COG4175 164 E---------LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK--LKKTIVFITHDLDEAL 229 (386)
T ss_pred c---------ccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHH--hCCeEEEEecCHHHHH
Confidence 5 8999999999999999999999999999999999999999999877654 3699999999997643
No 319
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.5e-34 Score=333.30 Aligned_cols=188 Identities=27% Similarity=0.385 Sum_probs=152.0
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~~--~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPPK--KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCCC--CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 38999999999732 4799999999999999999999999999999999999999999999975 2479
Q ss_pred EEEcccCcccc-cCHHHHhccCCCC----------------CC-C--------HHHHHHHHHHHhhH-------HHHHcC
Q 005203 579 GFVGQEPKLFR-MDISSNISYGCTQ----------------DI-K--------QQDIEWAAKQAYAH-------DFIMSL 625 (709)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~~----------------~~-~--------~e~i~~aa~~a~l~-------d~I~~L 625 (709)
|||+|++.+|. .|++|||.++... .. . .+++.++++.++.+ +.+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999985 5999999875210 00 1 12345555554433 233332
Q ss_pred CCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 626 PSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 626 P~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
|++- ... ..||||||||++|||||+.+|++|||||||++||+++...+.+.|++.. .|+|+|||+++.+
T Consensus 151 --~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~------~tvIiisHd~~~~ 221 (552)
T TIGR03719 151 --RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP------GTVVAVTHDRYFL 221 (552)
T ss_pred --CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC------CeEEEEeCCHHHH
Confidence 3321 122 4899999999999999999999999999999999999999999998762 6999999999988
Q ss_pred hhhcC
Q 005203 704 ALSFD 708 (709)
Q Consensus 704 ~~~~~ 708 (709)
..-+|
T Consensus 222 ~~~~d 226 (552)
T TIGR03719 222 DNVAG 226 (552)
T ss_pred HhhcC
Confidence 77665
No 320
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=332.03 Aligned_cols=181 Identities=22% Similarity=0.361 Sum_probs=153.0
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +.|
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 5999999999974 46999999999999999999999999999999999999999999999872 579
Q ss_pred EEEcccCc--cc-ccCHHHHhccCCCCCCCHHHHHHHHHHHhhH-HHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcc
Q 005203 579 GFVGQEPK--LF-RMDISSNISYGCTQDIKQQDIEWAAKQAYAH-DFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 579 ~~V~Qd~~--LF-~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~-d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr 654 (709)
|||+|++. ++ ..|++||+.+......+++++.++++..++. +...+.| ..||||||||++|||||++
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSV---------KVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcc---------cccCHHHHHHHHHHHHHhc
Confidence 99999974 44 3699999976422123456677777776662 3322221 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 655 DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+..-+|
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~------~tvi~vsHd~~~~~~~~d 503 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKYE------GTLIFVSHDREFVSSLAT 503 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHCC------CEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999998762 599999999998877666
No 321
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-34 Score=278.02 Aligned_cols=148 Identities=44% Similarity=0.736 Sum_probs=138.6
Q ss_pred EEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEE
Q 005203 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (709)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~ 580 (709)
+++|++|+|++ .++++++|++|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.....+++.++|
T Consensus 1 ~~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 1 EIENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred CeEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEE
Confidence 36899999974 369999999999999999999999999999999999999999999999999988878888999999
Q ss_pred EcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEE
Q 005203 581 VGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILI 660 (709)
Q Consensus 581 V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILI 660 (709)
++| |||||+||++||||++.+|++++
T Consensus 78 ~~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 78 VPQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred Eee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 661 LDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 661 LDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||++||.++...+.+.|+++.++ ++|+|+|||+++.+...+|
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~---~~tii~~sh~~~~~~~~~d 148 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEE---GRTVIIVTHDPELAELAAD 148 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999887642 4899999999999988776
No 322
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.8e-34 Score=361.46 Aligned_cols=196 Identities=19% Similarity=0.344 Sum_probs=165.8
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+++|+++ ..++++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.++.+ +....|+.|
T Consensus 1937 ~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1937 ILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred eEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 59999999999753 2579999999999999999999999999999999999999999999999999965 456788999
Q ss_pred EEEcccCcccc-cCHHHHhccCCC-CCCCH----HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 579 GFVGQEPKLFR-MDISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~~----e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
||+||++.++. -|++||+.++.. ...++ +.+.++++..++.++..+.+ ..||||||||++|||||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~---------~~LSGGqKqRLslA~AL 2085 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA---------GTYSGGNKRKLSTAIAL 2085 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999986 699999986311 12222 33445566666655543332 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+.+|+||+||||||+||+.+.+.+.+.|+++.++ |+|+|++||.++.+..-||
T Consensus 2086 i~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~---g~TIILtTH~mee~e~lcD 2138 (2272)
T TIGR01257 2086 IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE---GRAVVLTSHSMEECEALCT 2138 (2272)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999987643 6999999999998887666
No 323
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=9.4e-35 Score=330.51 Aligned_cols=196 Identities=24% Similarity=0.298 Sum_probs=152.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CcceEEECCEeCCC-CCHHHHhc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-TNGQILIDGFPIKE-VDIKWLRG 576 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-~~G~I~idG~di~~-~~~~~lR~ 576 (709)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.+||.++.. .+...+|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 4999999999974 4699999999999999999999999999999999999876 69999999987632 23345788
Q ss_pred ceEEEcccCcccc---cCHHHHhccCCC------CCCC---HHHHHHHHHHHhhHH-HHHcCCCCcccccCCCCCChHHH
Q 005203 577 RIGFVGQEPKLFR---MDISSNISYGCT------QDIK---QQDIEWAAKQAYAHD-FIMSLPSGYETLVDDDLLSGGQK 643 (709)
Q Consensus 577 ~I~~V~Qd~~LF~---gTI~eNI~~g~~------~~~~---~e~i~~aa~~a~l~d-~I~~LP~GydT~vGe~~LSGGQk 643 (709)
.||||+|++.++. .|+.||+.++.. .... ++++.++++..++.+ .... .+ ..||||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~--~~LSgGq~ 407 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADA-------PF--HSLSWGQQ 407 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccC-------ch--hhCCHHHH
Confidence 9999999987653 467777653210 0111 233444555544432 2111 11 47999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh-hcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL-SFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~-~~~ 708 (709)
||++|||||+++|++|||||||++||+++.+.+.+.|+++.++ .+.|+|+|||+++.+.. .+|
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~--~~~tviivsHd~~~~~~~~~d 471 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE--GETQLLFVSHHAEDAPACITH 471 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc--CCcEEEEEecchhhhhhhhhe
Confidence 9999999999999999999999999999999999999988643 12479999999998864 344
No 324
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-34 Score=284.41 Aligned_cols=199 Identities=26% Similarity=0.467 Sum_probs=159.8
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH-HHhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK-WLRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~-~lR~~ 577 (709)
-++++||+-.|.. ..+|++|||++++||+++++|+||+|||||+|.|+|+.+|.+|+|.++|.|+...++. ..|.-
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999974 5799999999999999999999999999999999999999999999999999998655 66777
Q ss_pred eEEEcccCccc-ccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcc
Q 005203 578 IGFVGQEPKLF-RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 578 I~~V~Qd~~LF-~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr 654 (709)
|+||||.-.+| +-|+.||+.+|.. ...+++ .+...+++--+-+| -+...... .+|||||+|-+||||||..
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~-~~~~~~----~~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAY-ARRDKE----AQERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhh-cccccc----cccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 99999999999 6899999998732 111100 01111222222223 12222222 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 655 DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++|+|||||.+|-|.--+.|.+.|++++++ .+.|++.|-++......-.|
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~--~g~tIlLVEQn~~~Al~iaD 205 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE--GGMTILLVEQNARFALEIAD 205 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHc--CCcEEEEEeccHHHHHHhhC
Confidence 99999999999999999999999999999853 35799999988765544433
No 325
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.7e-34 Score=311.11 Aligned_cols=201 Identities=29% Similarity=0.450 Sum_probs=164.8
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC-HHHHhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-IKWLRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~-~~~lR~~ 577 (709)
.++++|++.+||+ ..+.+||||+|++||+.||.|+||+|||||+|+|.|+|+|++|+|++||++++--+ .+..|.-
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 5899999999994 57899999999999999999999999999999999999999999999999987554 4577888
Q ss_pred eEEEcccCccc-ccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcc
Q 005203 578 IGFVGQEPKLF-RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 578 I~~V~Qd~~LF-~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr 654 (709)
||+|.|+..|+ +-|+.|||.+|.++... -.+......+.+.+..++ .|++-.... ..||-||+||+.|-+||||
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~-~~~~~~~~~~~i~~l~~~--yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr 157 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKG-GLIDRRQARARIKELSER--YGLPVDPDAKVADLSVGEQQRVEILKALYR 157 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccc-cccCHHHHHHHHHHHHHH--hCCCCCccceeecCCcchhHHHHHHHHHhc
Confidence 99999999999 67999999999652110 011111111122233332 133332233 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 655 DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++||||||||.|-+..-..+.+.+++++++ |+|+|+|||++..+..-+|
T Consensus 158 ~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~---G~tIi~ITHKL~Ev~~iaD 208 (501)
T COG3845 158 GARLLILDEPTAVLTPQEADELFEILRRLAAE---GKTIIFITHKLKEVMAIAD 208 (501)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC---CCEEEEEeccHHHHHHhhC
Confidence 99999999999999999999999999999875 8999999999999887776
No 326
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=330.07 Aligned_cols=196 Identities=21% Similarity=0.367 Sum_probs=154.1
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH-HHhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK-WLRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~-~lR~~ 577 (709)
.|+++||+++| +++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+||.++...+.. ..|+.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 48999999974 2499999999999999999999999999999999999999999999999999876643 45778
Q ss_pred eEEEcccCc---ccc-cCHHHHhcc-----CCCC-C-CCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHH
Q 005203 578 IGFVGQEPK---LFR-MDISSNISY-----GCTQ-D-IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (709)
Q Consensus 578 I~~V~Qd~~---LF~-gTI~eNI~~-----g~~~-~-~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (709)
++|++|++. +|. .|+.+|+.+ .... . .+.++.. ..+.+.+..+..+.+ .... ..|||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~-~~~~~~~~LSgGq~q 398 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSMRVKTP-GHRTQIGSLSGGNQQ 398 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhcCccCC-CcccccccCCcHHHH
Confidence 999999963 565 577766332 2110 1 1112221 123344454422211 1222 479999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++||||+.++|+||||||||++||+.+...+.+.|+++.+. ++|+|+|||+++.+..-+|
T Consensus 399 rv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~---~~tvi~vsHd~~~~~~~~d 459 (491)
T PRK10982 399 KVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK---DKGIIIISSEMPELLGITD 459 (491)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC---CCEEEEECCChHHHHhhCC
Confidence 999999999999999999999999999999999999887643 6899999999999887666
No 327
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.9e-34 Score=329.27 Aligned_cols=192 Identities=22% Similarity=0.387 Sum_probs=153.6
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHH-Hhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~-lR~~ 577 (709)
-|+++|++. .+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++...+... .|+.
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999983 1599999999999999999999999999999999999999999999999998776554 4678
Q ss_pred eEEEcccC---cccc-cCHHHHhccCC----CCCCCHHHHHHHHHHHhhHHHHHcCCCCcc-cccCC--CCCChHHHHHH
Q 005203 578 IGFVGQEP---KLFR-MDISSNISYGC----TQDIKQQDIEWAAKQAYAHDFIMSLPSGYE-TLVDD--DLLSGGQKQRI 646 (709)
Q Consensus 578 I~~V~Qd~---~LF~-gTI~eNI~~g~----~~~~~~e~i~~aa~~a~l~d~I~~LP~Gyd-T~vGe--~~LSGGQkQRI 646 (709)
|+||+|++ .+|. .|+.||+..+. ......++. ...+.+.+..+ |++ ..... ..||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999985 3665 59999986421 000011111 11233444443 332 22232 47999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 647 aLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+. |.|+|+|||+++.+..-||
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~---g~tiIivsHd~~~i~~~~d 471 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ---NVAVLFISSDLEEIEQMAD 471 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC---CCEEEEECCCHHHHHHhCC
Confidence 9999999999999999999999999999999999988643 6899999999999887776
No 328
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-34 Score=278.87 Aligned_cols=194 Identities=28% Similarity=0.411 Sum_probs=168.4
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+.+|+|++-.+ +.+|+++||+++|||.+||+||||+|||||+|.|+|.+.|++|++.+||+|++++...++-++-|
T Consensus 2 i~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 788999999875 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCcc-cccCHHHHhccCCCCC-----CCHHH--HHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005203 580 FVGQEPKL-FRMDISSNISYGCTQD-----IKQQD--IEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (709)
Q Consensus 580 ~V~Qd~~L-F~gTI~eNI~~g~~~~-----~~~e~--i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (709)
+.||+..| |+-|+.|-+.+|.-+. +.+++ ..+|...+++..+-.+. | ..||||++||+.+||.
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~---y------~~LSGGEqQRVqlARv 149 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD---Y------RTLSGGEQQRVQLARV 149 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc---h------hhcCchHHHHHHHHHH
Confidence 99999998 9999999999986322 12333 45566666655543321 2 3699999999999999
Q ss_pred hccC------CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRD------PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~------p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|.+- +++|+||||||+||..-.+.+.+..+++..+ |..|+.|=|++...+..+|
T Consensus 150 LaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~---g~~V~~VLHDLNLAA~YaD 209 (259)
T COG4559 150 LAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE---GGAVLAVLHDLNLAAQYAD 209 (259)
T ss_pred HHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc---CCcEEEEEccchHHHHhhh
Confidence 9864 4589999999999999999999999998865 6899999999999888877
No 329
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.7e-34 Score=280.72 Aligned_cols=137 Identities=34% Similarity=0.448 Sum_probs=123.4
Q ss_pred EEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEc
Q 005203 503 VDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVG 582 (709)
Q Consensus 503 ~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~ 582 (709)
.||+++|++ .+++++ +++|++||+++|+||||||||||+|+|+|+++|++|+|.+||.+ ++|++
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 589999964 468888 49999999999999999999999999999999999999999964 78898
Q ss_pred ccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 005203 583 QEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILD 662 (709)
Q Consensus 583 Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILD 662 (709)
|++. ||||||||++|||||+++|++++||
T Consensus 68 q~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLD 96 (177)
T cd03222 68 QYID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFD 96 (177)
T ss_pred ccCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 8653 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 663 EATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 663 EaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||++||+++.+.+.+.|+++.++ .+.|+|+|||+++.+..-+|
T Consensus 97 EPts~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d 140 (177)
T cd03222 97 EPSAYLDIEQRLNAARAIRRLSEE--GKKTALVVEHDLAVLDYLSD 140 (177)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHhCC
Confidence 999999999999999999887542 13899999999998876555
No 330
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=4.6e-34 Score=308.10 Aligned_cols=163 Identities=31% Similarity=0.466 Sum_probs=135.8
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCccccc-CHHHHhccCCC-CCCC----H
Q 005203 533 IAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRM-DISSNISYGCT-QDIK----Q 606 (709)
Q Consensus 533 IVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~ 606 (709)
|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|+||+|++.+|.. |++|||.++.. ...+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987654 47889999999999975 99999998631 0122 2
Q ss_pred HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcc
Q 005203 607 QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSD 686 (709)
Q Consensus 607 e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~ 686 (709)
+++.++++..++.++..+.| ..||||||||++|||||+++|++|+||||||+||+++.+.+.+.|+++.++
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKP---------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHcCCcchhcCCh---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 34556666666655444433 369999999999999999999999999999999999999999999887542
Q ss_pred CCCCcEEEEEecChhhhhhhcC
Q 005203 687 TMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 687 ~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.++|+|+|||+++.+..-+|
T Consensus 150 --~g~tiiivTHd~~e~~~~~d 169 (325)
T TIGR01187 150 --LGITFVFVTHDQEEAMTMSD 169 (325)
T ss_pred --cCCEEEEEeCCHHHHHHhCC
Confidence 25899999999998776666
No 331
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-34 Score=272.52 Aligned_cols=190 Identities=33% Similarity=0.502 Sum_probs=160.1
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC---------
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV--------- 569 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~--------- 569 (709)
.++++|+..+|.+. .||+++||+-++|+.++|+|-|||||||+++++-=|..|++|+|.+||..++--
T Consensus 6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 58999999999854 599999999999999999999999999999999999999999999999877421
Q ss_pred ----CHHHHhcceEEEcccCccc-ccCHHHHhc------cCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCC
Q 005203 570 ----DIKWLRGRIGFVGQEPKLF-RMDISSNIS------YGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLL 638 (709)
Q Consensus 570 ----~~~~lR~~I~~V~Qd~~LF-~gTI~eNI~------~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~L 638 (709)
..+.+|.+.|+|+|+-.|+ ..|+.||.- +|.+++.--|+-+..+.++|+.|--..-| ..|
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP---------~~L 153 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP---------AHL 153 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc---------ccc
Confidence 1457899999999999998 579999985 33221111233444566677766655444 359
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 639 SGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 639 SGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
||||.||.+|||||.-+|+++++||||||||+|---.+.+.++.+.++ |+|.++|||-+.-.
T Consensus 154 SGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE---grTMv~VTHEM~FA 215 (256)
T COG4598 154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE---GRTMVVVTHEMGFA 215 (256)
T ss_pred CchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh---CCeEEEEeeehhHH
Confidence 999999999999999999999999999999999999999999998865 89999999987643
No 332
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-34 Score=285.66 Aligned_cols=197 Identities=28% Similarity=0.484 Sum_probs=164.1
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHH-Hhcce
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGRI 578 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~-lR~~I 578 (709)
++++|++.+|.+ -.+++|+||++++||++||+||+||||||++|++.|+|+|++|+|.++|.||..+++.. .|.-|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 578999999985 46999999999999999999999999999999999999999999999999999998665 45669
Q ss_pred EEEcccCccc-ccCHHHHhccCCCCC-----------C--CHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHH
Q 005203 579 GFVGQEPKLF-RMDISSNISYGCTQD-----------I--KQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQ 642 (709)
Q Consensus 579 ~~V~Qd~~LF-~gTI~eNI~~g~~~~-----------~--~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQ 642 (709)
+--+|.+.+| +.|+.||+..+.... . .+++..+-| .+.++. -|++-.-.+ .+||+||
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A-----~~~Le~--vgL~~~a~~~A~~LsyG~ 154 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERA-----RELLEF--VGLGELADRPAGNLSYGQ 154 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHH-----HHHHHH--cCCchhhcchhhcCChhH
Confidence 9999999999 669999998862200 0 122222221 222332 244444444 4899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 643 kQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+.|+.|||||..+|++|+||||.++|.++....+.+.|++++++ .|.|+++|-|+++.+..-||
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~--~g~tillIEHdM~~Vm~l~d 218 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR--GGVTILLIEHDMKLVMGLAD 218 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc--CCcEEEEEEeccHHHhhhcc
Confidence 99999999999999999999999999999999999999999863 36999999999999988776
No 333
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.4e-33 Score=349.44 Aligned_cols=198 Identities=25% Similarity=0.378 Sum_probs=163.7
Q ss_pred CcEEEEEEEEEcCCC----------CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CcceEEECCEe
Q 005203 498 GRIDFVDVSFRYSSR----------EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP--TNGQILIDGFP 565 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~----------~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p--~~G~I~idG~d 565 (709)
..++++||+|.++.. +...+|+|+|++|+|||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 369999999998521 124699999999999999999999999999999999999874 78999999988
Q ss_pred CCCCCHHHHhcceEEEcccCcccc-cCHHHHhccCC----CCCCCHH----HHHHHHHHHhhHHHHHcCCCCcccccCC-
Q 005203 566 IKEVDIKWLRGRIGFVGQEPKLFR-MDISSNISYGC----TQDIKQQ----DIEWAAKQAYAHDFIMSLPSGYETLVDD- 635 (709)
Q Consensus 566 i~~~~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~----~~~~~~e----~i~~aa~~a~l~d~I~~LP~GydT~vGe- 635 (709)
.+ ...+|+.+|||+|++.++. .|++|||.+.. +++.+++ .+.++++..++.+ -.|+.+|.
T Consensus 946 ~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~ 1015 (1470)
T PLN03140 946 KK---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLP 1015 (1470)
T ss_pred CC---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCC
Confidence 64 3567888999999998875 69999998742 2123332 2555666665543 24788875
Q ss_pred --CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhh-hhhhcC
Q 005203 636 --DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS-TALSFD 708 (709)
Q Consensus 636 --~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst-i~~~~~ 708 (709)
+.||||||||++|||||+.+|++|+||||||+||+.+...+.+.|+++.+. |+|+|+++|+++. +...||
T Consensus 1016 ~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~---g~tVI~t~Hq~~~~i~~~~D 1088 (1470)
T PLN03140 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT---GRTVVCTIHQPSIDIFEAFD 1088 (1470)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHHhCC
Confidence 589999999999999999999999999999999999999999999998653 6999999999984 555555
No 334
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.4e-33 Score=323.66 Aligned_cols=181 Identities=24% Similarity=0.337 Sum_probs=151.9
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ ..|
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999963 24999999999999999999999999999999999999999999986 159
Q ss_pred EEEcccCcc-cccCHHHHhccCCCCCC-CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCC
Q 005203 579 GFVGQEPKL-FRMDISSNISYGCTQDI-KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (709)
Q Consensus 579 ~~V~Qd~~L-F~gTI~eNI~~g~~~~~-~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p 656 (709)
+|++|++.+ ++.|++||+.++.. .. .++.+.++++..++.+...+.| ..||||||||++|||||.++|
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~---------~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITD-DLGSSYYKSEIIKPLQLERLLDKNV---------KDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhh-hcChHHHHHHHHHHCCCHHHHhCCc---------ccCCHHHHHHHHHHHHHhcCC
Confidence 999999875 57899999987632 22 2334556666666654433322 369999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 657 TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|||||||++||+++...+.+.|+++.++ .++|+|+|||++..+..-+|
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tviivsHD~~~~~~~aD 522 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEE--REATALVVDHDIYMIDYISD 522 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999988542 25899999999998877666
No 335
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.8e-33 Score=286.00 Aligned_cols=167 Identities=19% Similarity=0.233 Sum_probs=133.3
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEE-ECCEeCCCCCHHHHhcceEEEcccCccccc-CHHH
Q 005203 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQIL-IDGFPIKEVDIKWLRGRIGFVGQEPKLFRM-DISS 594 (709)
Q Consensus 517 vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~-idG~di~~~~~~~lR~~I~~V~Qd~~LF~g-TI~e 594 (709)
+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|. ++|.++ .+.|++.+|.+ |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 78999999999999999999999999999999999999999997 787543 13467788875 9999
Q ss_pred HhccCCC-CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 005203 595 NISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673 (709)
Q Consensus 595 NI~~g~~-~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE 673 (709)
||.++.. ...+.+++.+.+. ....++..+++.+ ..||||||||++||||++++|++++|||||+++|+.+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~--~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~ 140 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY------QLTQLEQCYTDRV--SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQ 140 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH------HHhChhHHhhchH--hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 9987521 1233444333221 1233444455444 35999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 674 HNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 674 ~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+.+.+.+.+..+ ++|+|+|||+++.+...+|
T Consensus 141 ~~~~~~l~~~~~----~~~ii~vsH~~~~~~~~~d 171 (213)
T PRK15177 141 LRMQAALACQLQ----QKGLIVLTHNPRLIKEHCH 171 (213)
T ss_pred HHHHHHHHHHhh----CCcEEEEECCHHHHHHhcC
Confidence 999998854333 3789999999998877666
No 336
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=3.2e-33 Score=322.23 Aligned_cols=182 Identities=23% Similarity=0.331 Sum_probs=146.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ ++ .|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EE
Confidence 4999999999974 4699999999999999999999999999999999999999999999965 21 59
Q ss_pred EEEcccCc-cc-ccCHHHHhccCCCC-CCC--HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 579 GFVGQEPK-LF-RMDISSNISYGCTQ-DIK--QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 579 ~~V~Qd~~-LF-~gTI~eNI~~g~~~-~~~--~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
|||+|++. ++ +.|+.||+.++... ..+ +++..++++..++.+.. .+..+ ..||||||||++|||||+
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~--~~LSgGe~qrv~la~al~ 459 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD------QQKKV--GQLSGGERNRVHLAKTLK 459 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH------hcCch--hhCCHHHHHHHHHHHHHh
Confidence 99999963 55 46999999886320 111 22223333333321100 01111 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+..-+|
T Consensus 460 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~------~~viivsHd~~~~~~~~d 508 (552)
T TIGR03719 460 SGGNVLLLDEPTNDLDVETLRALEEALLEFA------GCAVVISHDRWFLDRIAT 508 (552)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC------CeEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999873 499999999998877666
No 337
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.7e-33 Score=321.80 Aligned_cols=182 Identities=24% Similarity=0.340 Sum_probs=146.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++ .|
T Consensus 324 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i 389 (556)
T PRK11819 324 VIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KL 389 (556)
T ss_pred EEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EE
Confidence 4999999999974 4699999999999999999999999999999999999999999999964 21 59
Q ss_pred EEEcccC-cccc-cCHHHHhccCCCC---CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 579 GFVGQEP-KLFR-MDISSNISYGCTQ---DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 579 ~~V~Qd~-~LF~-gTI~eNI~~g~~~---~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
|||+|++ .++. -|+.||+.++... ...+++..++++..++.+. ..+..+ ..||||||||++|||||+
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~--~~LSgG~~qrv~la~al~ 461 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG------DQQKKV--GVLSGGERNRLHLAKTLK 461 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh------HhcCch--hhCCHHHHHHHHHHHHHh
Confidence 9999996 5654 5999999875320 1112233333333333110 011111 379999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+..-+|
T Consensus 462 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~------~tvi~vtHd~~~~~~~~d 510 (556)
T PRK11819 462 QGGNVLLLDEPTNDLDVETLRALEEALLEFP------GCAVVISHDRWFLDRIAT 510 (556)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC------CeEEEEECCHHHHHHhCC
Confidence 9999999999999999999999999998863 499999999998877666
No 338
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=5.5e-33 Score=324.85 Aligned_cols=181 Identities=24% Similarity=0.413 Sum_probs=145.8
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999974 46999999999999999999999999999999999999999999999 4332 59
Q ss_pred EEEcccC-cccc-cCHHHHhccCCCCCC--C--HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 579 GFVGQEP-KLFR-MDISSNISYGCTQDI--K--QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 579 ~~V~Qd~-~LF~-gTI~eNI~~g~~~~~--~--~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
||++|++ .++. .|+.||+.++.+ .. + ++++.+.++..++.+ ...+..+ ..||||||||++|||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~--~~LSgGekqRl~la~al 455 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQ-EVMVNGRPRHVLGYLQDFLFHP------KRAMTPV--KALSGGERNRLLLARLF 455 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcc-cccccchHHHHHHHHHhcCCCH------HHHhChh--hhCCHHHHHHHHHHHHH
Confidence 9999986 4654 499999987632 21 1 223333333333211 0112222 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+.+|++|||||||++||..+...+.+.|++. +.|+|+|||+.+.+...+|
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vSHd~~~~~~~~d 505 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY------QGTVLLVSHDRQFVDNTVT 505 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC------CCeEEEEECCHHHHHHhcC
Confidence 9999999999999999999999999999876 2599999999998877665
No 339
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-33 Score=283.51 Aligned_cols=178 Identities=29% Similarity=0.471 Sum_probs=162.9
Q ss_pred eeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC----CCCHHHHhcceEEEcccCccc-ccCHH
Q 005203 519 QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK----EVDIKWLRGRIGFVGQEPKLF-RMDIS 593 (709)
Q Consensus 519 ~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~----~~~~~~lR~~I~~V~Qd~~LF-~gTI~ 593 (709)
=++||+.+.-..+||-|+||||||||+|++.|+..|++|+|.+||.-+. .+...-.+++||||+||..|| .-|++
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 3689999988999999999999999999999999999999999998663 455667789999999999999 78999
Q ss_pred HHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 005203 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673 (709)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE 673 (709)
-|++||.. ..+.++..+++.+.|+.....++|.- ||||+|||+||+|||+.+|++|+||||-|+||....
T Consensus 95 gNL~YG~~-~~~~~~fd~iv~lLGI~hLL~R~P~~---------LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 95 GNLRYGMW-KSMRAQFDQLVALLGIEHLLDRYPGT---------LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred cchhhhhc-ccchHhHHHHHHHhCcHHHHhhCCCc---------cCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 99999975 66788999999999999999999955 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 674 HNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 674 ~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|+-.|+++.++ .+.-++.|||.+..+++=+|
T Consensus 165 ~EilpylERL~~e--~~IPIlYVSHS~~Ev~RLAd 197 (352)
T COG4148 165 REILPYLERLRDE--INIPILYVSHSLDEVLRLAD 197 (352)
T ss_pred hHHHHHHHHHHHh--cCCCEEEEecCHHHHHhhhh
Confidence 9999999999876 35889999999999887665
No 340
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.1e-32 Score=323.85 Aligned_cols=181 Identities=27% Similarity=0.378 Sum_probs=149.0
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+|+|++. +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ +..|
T Consensus 508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 59999999999743 4699999999999999999999999999999999999999999999875 2469
Q ss_pred EEEcccCcccccCHHHHhccC----CCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcc
Q 005203 579 GFVGQEPKLFRMDISSNISYG----CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 579 ~~V~Qd~~LF~gTI~eNI~~g----~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr 654 (709)
||++|++. ...++.+|..+. .+ ..+++++.++++..++.+.....| -..||||||||++|||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~-~~~~~~i~~~L~~~gl~~~~~~~~--------~~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLALQP--------MYTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcC-CCCHHHHHHHHHHCCCChHHhcCC--------ccccCHHHHHHHHHHHHHhc
Confidence 99999863 334566664321 12 445778888888877754322111 14699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 655 DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++|||||||++||+++...+.+.|.+.. .|+|+|||++..+...+|
T Consensus 645 ~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~------gtvIivSHd~~~i~~~~d 692 (718)
T PLN03073 645 KPHILLLDEPSNHLDLDAVEALIQGLVLFQ------GGVLMVSHDEHLISGSVD 692 (718)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHcC------CEEEEEECCHHHHHHhCC
Confidence 999999999999999999999988887642 499999999998887666
No 341
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=2.8e-33 Score=263.71 Aligned_cols=134 Identities=45% Similarity=0.715 Sum_probs=122.6
Q ss_pred ceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccC-HHHHh
Q 005203 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMD-ISSNI 596 (709)
Q Consensus 518 L~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gT-I~eNI 596 (709)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++|++|++.+|.+. +.||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999887 9999
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 005203 597 SYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATS 666 (709)
Q Consensus 597 ~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTS 666 (709)
..++++.++++..++.+ ..++.++. ..||||||||++|||||+++|++|||||||+
T Consensus 80 -------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23677888888887655 34566665 5899999999999999999999999999996
No 342
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=320.99 Aligned_cols=180 Identities=22% Similarity=0.318 Sum_probs=147.9
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++. ..|
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 4999999999973 46999999999999999999999999999999999999999999999741 269
Q ss_pred EEEcccC--ccc-ccCHHHHhccCCCCCCCHHHHHHHHHHHhhHH-HHHcCCCCcccccCCCCCChHHHHHHHHHHHhcc
Q 005203 579 GFVGQEP--KLF-RMDISSNISYGCTQDIKQQDIEWAAKQAYAHD-FIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 579 ~~V~Qd~--~LF-~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d-~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr 654 (709)
||++|+. .++ ..|+.+|+....+ ...++++.++++..++.+ .... .+ ..||||||||++|||||++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~-------~~--~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAP-QELEQKLRDYLGGFGFQGDKVTE-------ET--RRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCc-hhhHHHHHHHHHHcCCChhHhcC-------ch--hhCCHHHHHHHHHHHHHhc
Confidence 9999985 344 3478888753222 334455666666555432 2221 11 3699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 655 DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++|||||||++||+.+...+.+.|+++. .|+|+|||++..+..-||
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~------gtvi~vSHd~~~~~~~~d 495 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDFE------GALVVVSHDRHLLRSTTD 495 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHcC------CeEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999998862 499999999998877666
No 343
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-32 Score=273.53 Aligned_cols=199 Identities=30% Similarity=0.422 Sum_probs=158.0
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH-HHHhc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI-KWLRG 576 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~-~~lR~ 576 (709)
.-|+++||+++|.+ +++|+|+|.+|+|||..+|+||||||||||++++.|.+.|++|.+.+.|+....-+. .++|+
T Consensus 30 ~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 34999999999974 589999999999999999999999999999999999999999999999999988877 99999
Q ss_pred ceEEEccc---CcccccCHHHHhcc------CCCC-CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHH
Q 005203 577 RIGFVGQE---PKLFRMDISSNISY------GCTQ-DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (709)
Q Consensus 577 ~I~~V~Qd---~~LF~gTI~eNI~~------g~~~-~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (709)
+||+|+-+ .+.=+.+++|=+.- |... +.|+++..+|.... +. .|.....+. ..||-||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~ll------e~--~g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLL------EL--LGAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHH------HH--cchhhhccCchhhcCHhHHH
Confidence 99999843 33335556665531 1111 44555544433222 11 133333333 479999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+.|||||.++|++|||||||++||..+.+...+.|..+... ..+.|+|+|||+.+.|.-.|+
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~-~~~~~ll~VtHh~eEi~~~~t 241 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS-PGAPALLFVTHHAEEIPPCFT 241 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcC-CCCceEEEEEcchhhcccccc
Confidence 999999999999999999999999999999999999887643 235799999999998765543
No 344
>PRK13409 putative ATPase RIL; Provisional
Probab=99.98 E-value=8.4e-33 Score=319.11 Aligned_cols=186 Identities=26% Similarity=0.337 Sum_probs=151.5
Q ss_pred EEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEE-----------ECCEeCCCCCH
Q 005203 503 VDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQIL-----------IDGFPIKEVDI 571 (709)
Q Consensus 503 ~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~-----------idG~di~~~~~ 571 (709)
++++++|+++ ..+|++++ ++++||+++|+||||||||||+|+|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 3589999742 46999999 9999999999999999999999999999999999998 99999865432
Q ss_pred H--HHhcc----eEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHH
Q 005203 572 K--WLRGR----IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (709)
Q Consensus 572 ~--~lR~~----I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (709)
+ ..+.. +.+++|.|.+|.+|++||+... + ..+++.++++..++.+.. |..+ ..||||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~-~~~~~~~~l~~l~l~~~~-------~~~~--~~LSgGe~qr 220 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---D-ERGKLDEVVERLGLENIL-------DRDI--SELSGGELQR 220 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh---h-HHHHHHHHHHHcCCchhh-------cCCh--hhCCHHHHHH
Confidence 1 11122 4556667788899999999854 1 235666666666654332 2222 3699999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|||||+++|++|+||||||+||+++...+.+.|+++.+ ++|+|+|+|+++.+..-+|
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~----g~tvIivsHd~~~l~~~~D 279 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE----GKYVLVVEHDLAVLDYLAD 279 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC----CCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999999998863 4899999999998876665
No 345
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=2.5e-32 Score=255.73 Aligned_cols=192 Identities=28% Similarity=0.443 Sum_probs=162.1
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE--eCCCCC----HH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF--PIKEVD----IK 572 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~--di~~~~----~~ 572 (709)
+|+++|+.|.|+. ..+|.|++|+-+.||++.+.||||+|||||++.|-=+.-|.+|+..|-|. |.++.. ..
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 5899999999985 36899999999999999999999999999999999999999999999875 444332 45
Q ss_pred HHhcceEEEcccCccc-ccCHHHHhccC------CCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHH
Q 005203 573 WLRGRIGFVGQEPKLF-RMDISSNISYG------CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR 645 (709)
Q Consensus 573 ~lR~~I~~V~Qd~~LF-~gTI~eNI~~g------~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQR 645 (709)
.+|+.+|+|+|.-+|+ .-|+-||+--. -+++.-..+-.+.++...+.++-++.|-. |||||.||
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plh---------lsggqqqr 149 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLH---------LSGGQQQR 149 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCcee---------cccchhhh
Confidence 8999999999999998 57999998532 22111223445566677777777777744 89999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
+||||||..+|++|++||||++||+|-.++|-+.|+++.+. |.|-++|||..+...+
T Consensus 150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~t---gitqvivthev~va~k 206 (242)
T COG4161 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAET---GITQVIVTHEVEVARK 206 (242)
T ss_pred HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhc---CceEEEEEeehhHHHh
Confidence 99999999999999999999999999999999999999754 8999999998876543
No 346
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.98 E-value=7.9e-32 Score=265.28 Aligned_cols=146 Identities=32% Similarity=0.505 Sum_probs=119.1
Q ss_pred CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHH
Q 005203 514 MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDIS 593 (709)
Q Consensus 514 ~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~ 593 (709)
..++|+|+||+|++||.+||+||||||||||+++++ +++|+|.++|.. .. ..|+.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~----~~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PK----FSRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-cc----cccccEEEEhH----------
Confidence 368999999999999999999999999999999986 368999998763 22 12446888887
Q ss_pred HHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccC--CCEEEEeCCCCCCC
Q 005203 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD--PTILILDEATSALD 669 (709)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~--p~ILILDEaTSaLD 669 (709)
.+++..++.++.+ .+. ..||||||||++|||||+++ |++++|||||++||
T Consensus 68 -------------------------~~~l~~~~L~~~~-~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD 121 (176)
T cd03238 68 -------------------------LQFLIDVGLGYLT-LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH 121 (176)
T ss_pred -------------------------HHHHHHcCCCccc-cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCC
Confidence 1234444433322 232 58999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 670 AESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 670 ~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+++.+.+.+.|+++.+. ++|+|+|||+++.+. .+|
T Consensus 122 ~~~~~~l~~~l~~~~~~---g~tvIivSH~~~~~~-~~d 156 (176)
T cd03238 122 QQDINQLLEVIKGLIDL---GNTVILIEHNLDVLS-SAD 156 (176)
T ss_pred HHHHHHHHHHHHHHHhC---CCEEEEEeCCHHHHH-hCC
Confidence 99999999999887532 699999999999765 355
No 347
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=5.8e-32 Score=250.64 Aligned_cols=188 Identities=26% Similarity=0.432 Sum_probs=159.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---cceEEECCEeCCCCCHHHHh
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT---NGQILIDGFPIKEVDIKWLR 575 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~---~G~I~idG~di~~~~~~~lR 575 (709)
-+.++||+.+-++ ...|.|+|++|.+||++-|.||||||||||+.-+.|.+.|+ +|++.+|++++..++. -|
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa--~q 76 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA--AQ 76 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch--hh
Confidence 3678999998875 46999999999999999999999999999999999999885 6999999999998774 47
Q ss_pred cceEEEcccCccc-ccCHHHHhccCCCCCC----CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 576 GRIGFVGQEPKLF-RMDISSNISYGCTQDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 576 ~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
++||+.+||+.|| .-|+-+||.|.-|++. .......|++..++.++..+-|+ +||||||-|+++-|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~---------tlSGGQrARvaL~R 147 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPA---------TLSGGQRARVALLR 147 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChh---------hcCcchHHHHHHHH
Confidence 8999999999999 5789999999876433 33445667777788777777663 48999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHH-HhhccCCCCcEEEEEecChhhh
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLR-AVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~-~l~~~~~~~~TvIiIAHRlsti 703 (709)
+|+.+|+.|+||||.|.||..-.....+-.. +.+. .|.-+|.|||+.+.+
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~---agiPtv~VTHD~~Dv 198 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRA---AGIPTVQVTHDLQDV 198 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHh---cCCCeEEEecccccC
Confidence 9999999999999999999988777766653 2322 268999999998754
No 348
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.98 E-value=1.5e-31 Score=281.78 Aligned_cols=198 Identities=31% Similarity=0.427 Sum_probs=162.7
Q ss_pred CcEEEEEEEEEcCCCC--------CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC
Q 005203 498 GRIDFVDVSFRYSSRE--------MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV 569 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~--------~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~ 569 (709)
.-++.+||...||-+. .-.+.+++||+.++||+++|||+||||||||-..|+||.+++ |+|.++|+|+..+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 3589999999987431 134689999999999999999999999999999999999887 9999999999988
Q ss_pred CHH---HHhcceEEEcccCcc---cccCHHHHhccC----CCCCC----CHHHHHHHHHHHhhHHHHH-cCCCCcccccC
Q 005203 570 DIK---WLRGRIGFVGQEPKL---FRMDISSNISYG----CTQDI----KQQDIEWAAKQAYAHDFIM-SLPSGYETLVD 634 (709)
Q Consensus 570 ~~~---~lR~~I~~V~Qd~~L---F~gTI~eNI~~g----~~~~~----~~e~i~~aa~~a~l~d~I~-~LP~GydT~vG 634 (709)
+.+ -+|+++-+|+|||+= =..||.+=|.=| .+ .. .++++.+|++.+|++.... +-|
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RYP-------- 424 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRYP-------- 424 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcCC--------
Confidence 865 578999999999972 135666655433 22 22 3467778888888766543 222
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 635 DDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 635 e~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
..+|||||||||||||+.-+|++++|||||||||..-.++|.+.++++.+. .+-+=++|+|+++.++--||
T Consensus 425 -hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k--~~LsYLFISHDL~VvrAl~~ 495 (534)
T COG4172 425 -HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK--HGLSYLFISHDLAVVRALCH 495 (534)
T ss_pred -cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH--hCCeEEEEeccHHHHHHhhc
Confidence 359999999999999999999999999999999999999999999988754 57899999999998765443
No 349
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=9.5e-33 Score=267.52 Aligned_cols=195 Identities=27% Similarity=0.486 Sum_probs=156.4
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH-HHhc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK-WLRG 576 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~-~lR~ 576 (709)
+.+..+|+..+|.. ++|.+++||+|++||.|++.||+|+||||....+.||.+|++|+|.+||.|++.++.. .-|-
T Consensus 3 ~~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 35788999999974 5799999999999999999999999999999999999999999999999999999865 4566
Q ss_pred ceEEEcccCcccc-cCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhc
Q 005203 577 RIGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALl 653 (709)
-|||+|||+.+|. -|+.|||...-. ..+.+...+.+...+++.++.+ ++...-.. .+||||||.|+.|||||.
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE--~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLE--IREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHh--hhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHh
Confidence 6999999999995 589999975421 2221222222332223333322 12222222 389999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhh
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
.+|+.++||||.+++||.+-..|++.++.++. +|.-++|--|+...
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~---rgiGvLITDHNVRE 201 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD---RGIGVLITDHNVRE 201 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHh---CCceEEEccccHHH
Confidence 99999999999999999999999999999875 37888888898644
No 350
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9e-32 Score=314.31 Aligned_cols=187 Identities=24% Similarity=0.372 Sum_probs=141.7
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ .++|+|+||+|++||++|||||||||||||+|+|+|+++|++|+|.++|.. .|+
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999974 469999999999999999999999999999999999999999999999842 388
Q ss_pred EEcccCcccccCHHHHhccCCCC--CCC-----------HHHHHHHHH----------HHhhHHHHHcCCCCccc-ccCC
Q 005203 580 FVGQEPKLFRMDISSNISYGCTQ--DIK-----------QQDIEWAAK----------QAYAHDFIMSLPSGYET-LVDD 635 (709)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~--~~~-----------~e~i~~aa~----------~a~l~d~I~~LP~GydT-~vGe 635 (709)
|++|++..+..|+.+++.-.... ..+ ...+..+.. ...+.+.+..+ |++. ....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 99997666666776665421000 000 000000000 01222333333 3321 1222
Q ss_pred --CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 636 --DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 636 --~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
..||||||||++|||||+.+|++|||||||+|||+++...+.+.|++. +.|+|+|||+...+..-+|
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~------~~tviivsHd~~~l~~~~d 214 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY------QGTLILISHDRDFLDPIVD 214 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHhcC
Confidence 479999999999999999999999999999999999999999999875 2699999999998876665
No 351
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=1.2e-31 Score=335.22 Aligned_cols=184 Identities=24% Similarity=0.345 Sum_probs=151.0
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC----CCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccc-
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY----EPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR- 589 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~----~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~- 589 (709)
+++|+|+|+++++||.+||+||||||||||+|+|+|+. .|.+|+|.+||.++.+.. ..+|+.++||+|++.+|.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46999999999999999999999999999999999986 579999999999986543 457888999999998886
Q ss_pred cCHHHHhccCC----CC----CCCHHHHHH-----HHHHHhhHHHHHcCCCCcccccCC---CCCChHHHHHHHHHHHhc
Q 005203 590 MDISSNISYGC----TQ----DIKQQDIEW-----AAKQAYAHDFIMSLPSGYETLVDD---DLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 590 gTI~eNI~~g~----~~----~~~~e~i~~-----aa~~a~l~d~I~~LP~GydT~vGe---~~LSGGQkQRIaLARALl 653 (709)
-|++||+.|+. +. +.++++..+ +++.. .|..-.||.+|+ +.||||||||++|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATY-------GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHc-------CcccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 59999998752 10 123332211 22222 344457899997 589999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh-hhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI-STALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls-ti~~~~~ 708 (709)
.+|++|+||||||+||+.+...+.+.|+++.+. .|+|+|+++|+++ .+..-||
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~--~g~tvii~~Hq~~~~i~~l~D 279 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANI--LDTTPLVAIYQCSQDAYELFD 279 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHh--cCCEEEEEecCCCHHHHHhhc
Confidence 999999999999999999999999999998642 2689999999984 5555555
No 352
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.97 E-value=3.9e-28 Score=262.25 Aligned_cols=319 Identities=21% Similarity=0.297 Sum_probs=227.4
Q ss_pred HHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 005203 361 EVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIM--------- 431 (709)
Q Consensus 361 ~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~vl~~ga~lV~--------- 431 (709)
..-...+.+-++|-.|+..+.+.+..+...+.+.+.-....+...++..+-+++.- -.|-|.-+|+
T Consensus 304 ~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mK-----YvWsg~GlvmvsiPI~~~t 378 (728)
T KOG0064|consen 304 YLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMK-----YTWSGTGLVMVSIPILTST 378 (728)
T ss_pred HHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhccCceEEEEeeeeecc
Confidence 33456788899999999999998888888888877543333333333332222110 1232322221
Q ss_pred ---hCCcC-----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------CCCCcc-
Q 005203 432 ---RGNIT-----AEQLTKFILYSEWLI---YSTWWVGDNLSSLMQSVGASEKVFQLMDL-------------MPSDQF- 486 (709)
Q Consensus 432 ---~G~lt-----~G~l~af~~y~~~~~---~~~~~l~~~~~~~~~~~~~~~Rl~~il~~-------------~~e~~~- 486 (709)
+|... +.+.-+|+.-...+. ..+..+...+-++.+..+...|+++..+- .+|...
T Consensus 379 ~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~ 458 (728)
T KOG0064|consen 379 LASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSS 458 (728)
T ss_pred cCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhc
Confidence 22211 112344554444443 33444555566666777777887754431 111100
Q ss_pred -----ccccccccC-----CCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc
Q 005203 487 -----MSKGKKLQR-----LMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN 556 (709)
Q Consensus 487 -----~~~~~~~~~-----~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~ 556 (709)
..++.+.+. ....|.++||-.--|.. .-+..+++|+|++|-.+-|+||+|||||+|.++|.|+++...
T Consensus 459 ~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~ 536 (728)
T KOG0064|consen 459 RTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAG--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYN 536 (728)
T ss_pred cCccccccCCcCCccchhhcccceEEecCceeccCc--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccC
Confidence 001111111 12359999998888864 358899999999999999999999999999999999999987
Q ss_pred ceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCC------CCCCHHHHHHHHHHHhhHHHHHcCCCCcc
Q 005203 557 GQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCT------QDIKQQDIEWAAKQAYAHDFIMSLPSGYE 630 (709)
Q Consensus 557 G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~------~~~~~e~i~~aa~~a~l~d~I~~LP~Gyd 630 (709)
|...+-- +.+|-|+||.|+.=-||+||-|-|-+. ++.+|.++++.++.+.++. |.+-..|+|
T Consensus 537 g~L~~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~-i~qr~~g~d 604 (728)
T KOG0064|consen 537 GLLSIPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEH-ILQREGGWD 604 (728)
T ss_pred CeeecCC-----------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHH-HHHhccChh
Confidence 7766521 234999999999999999999998642 3678999999999999974 555577887
Q ss_pred cccCC-CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 631 TLVDD-DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 631 T~vGe-~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
..-.= .-||||+|||+++||.+|++|+.-+|||+|||.-++-|..|.++.+.. |.+.|-|+|||+...
T Consensus 605 a~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~------gi~llsithrpslwk 673 (728)
T KOG0064|consen 605 AVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA------GISLLSITHRPSLWK 673 (728)
T ss_pred hhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc------CceEEEeecCccHHH
Confidence 76543 589999999999999999999999999999999999999999999875 599999999998653
No 353
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=2.1e-31 Score=260.82 Aligned_cols=185 Identities=28% Similarity=0.434 Sum_probs=160.1
Q ss_pred CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcc---ccc
Q 005203 514 MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKL---FRM 590 (709)
Q Consensus 514 ~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~L---F~g 590 (709)
++++|+++||+|++||.|-|+|.+|+|||||++.+.|-..|++|+|+|||+|+..++...--..++-|+|||.. =+-
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 47899999999999999999999999999999999999999999999999999999998888889999999974 367
Q ss_pred CHHHHhccCCCCC----CCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 005203 591 DISSNISYGCTQD----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEA 664 (709)
Q Consensus 591 TI~eNI~~g~~~~----~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEa 664 (709)
||.||+.++.... ... -...-+.....+.+..+|.|++-.+++ .-|||||||=++|+-|-++.|+||+|||=
T Consensus 98 TieENl~la~~Rg~~rgl~~--~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSS--ALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccch--hhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 8999999874321 111 112334556678899999999999998 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhh
Q 005203 665 TSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 665 TSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
|+||||.+...|++.=.+.-++ .+.|.++|||.++-
T Consensus 176 TAALDPkta~~vm~lT~kiV~~--~klTtlMVTHnm~~ 211 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEE--HKLTTLMVTHNMED 211 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHh--cCCceEEEeccHHH
Confidence 9999999999998876554432 35899999999864
No 354
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=1.3e-30 Score=304.82 Aligned_cols=185 Identities=24% Similarity=0.401 Sum_probs=139.3
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ .++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 4 l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 4 ISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 889999999974 469999999999999999999999999999999999999999999998731 267
Q ss_pred EEcccCcc-cccCHHHHhccCCC-----------------CCCCHHHHHHHHH-------------HHhhHHHHHcCCCC
Q 005203 580 FVGQEPKL-FRMDISSNISYGCT-----------------QDIKQQDIEWAAK-------------QAYAHDFIMSLPSG 628 (709)
Q Consensus 580 ~V~Qd~~L-F~gTI~eNI~~g~~-----------------~~~~~e~i~~aa~-------------~a~l~d~I~~LP~G 628 (709)
+++|++.. ..+++.+++..+.. .+..++.+...++ ...+.+.+..+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 77776532 23666666532210 0000111111110 11223334433 3
Q ss_pred cccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhh
Q 005203 629 YETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALS 706 (709)
Q Consensus 629 ydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~ 706 (709)
++ ... ..||||||||++|||||+.+|++|||||||+|||+++...+.+.|+++. .|+|+|||++..+...
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~------~tvlivsHd~~~l~~~ 219 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ------GSIIFISHDRSFIRNM 219 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC------CEEEEEeCCHHHHHHh
Confidence 32 111 4799999999999999999999999999999999999999999998763 5999999999988766
Q ss_pred cC
Q 005203 707 FD 708 (709)
Q Consensus 707 ~~ 708 (709)
+|
T Consensus 220 ~d 221 (635)
T PRK11147 220 AT 221 (635)
T ss_pred cC
Confidence 65
No 355
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.9e-30 Score=300.36 Aligned_cols=195 Identities=30% Similarity=0.508 Sum_probs=163.9
Q ss_pred CcEEEEEEEEEcCCCC--CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC---CcceEEECCEeCCCCCHH
Q 005203 498 GRIDFVDVSFRYSSRE--MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP---TNGQILIDGFPIKEVDIK 572 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~--~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p---~~G~I~idG~di~~~~~~ 572 (709)
..++++|+++.-++.. .+.+|+|||.+++|||..||.||||||||||++.|+|-.++ .+|+|++||++ .+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---Cchh
Confidence 4689999999987642 47899999999999999999999999999999999999975 78999999955 4678
Q ss_pred HHhcceEEEcccCccc-ccCHHHHhccCC----CCCCCHHHHHHHHHHHhhHHHHHcCCCC--cccccCC---CCCChHH
Q 005203 573 WLRGRIGFVGQEPKLF-RMDISSNISYGC----TQDIKQQDIEWAAKQAYAHDFIMSLPSG--YETLVDD---DLLSGGQ 642 (709)
Q Consensus 573 ~lR~~I~~V~Qd~~LF-~gTI~eNI~~g~----~~~~~~e~i~~aa~~a~l~d~I~~LP~G--ydT~vGe---~~LSGGQ 642 (709)
.+|+.+|||+||+.++ .-|++|++.|.. |.+.+.++.. ..+++.|.+|..- =||.||. +++||||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~-----~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKR-----ERVEEVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHcCChhhccceecCCCCCccccch
Confidence 9999999999999988 679999998653 2122333222 2233444444333 5889986 5899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 643 kQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
|+|++||--|+.||+||+||||||+||..+..++.+.|+++.++ |||||+.=|.|+.-
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~---grtVi~tIHQPss~ 233 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS---GRTVICTIHQPSSE 233 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC---CCEEEEEEeCCcHH
Confidence 99999999999999999999999999999999999999998865 89999999999753
No 356
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=7e-31 Score=327.45 Aligned_cols=189 Identities=23% Similarity=0.368 Sum_probs=149.9
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---cceEEECCEeCCCCCHHHHhcceEEEcccCcccc-c
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT---NGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR-M 590 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~---~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~-g 590 (709)
..+|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||.++.+.. .|+.++||+|++.+|. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 56999999999999999999999999999999999999998 999999999987654 3788999999998885 6
Q ss_pred CHHHHhccCCC-C----------CCCH----------HHHH---HHHHHHh------hHHHHH--cCCCCcccccCC---
Q 005203 591 DISSNISYGCT-Q----------DIKQ----------QDIE---WAAKQAY------AHDFIM--SLPSGYETLVDD--- 635 (709)
Q Consensus 591 TI~eNI~~g~~-~----------~~~~----------e~i~---~aa~~a~------l~d~I~--~LP~GydT~vGe--- 635 (709)
|++||+.|+.. . +.+. +++. +++...+ .++.++ .|..-.||.||+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999987421 0 0001 1111 1111111 122332 345556899998
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh-hhhhhcC
Q 005203 636 DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI-STALSFD 708 (709)
Q Consensus 636 ~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls-ti~~~~~ 708 (709)
+.||||||||++|||||+.+|++|+|||||++||+.+...+.+.|+++.+. .|+|+|+++|.++ .+..-||
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~--~g~Tviis~Hqp~~~i~~lfD 406 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHL--TEATVLMSLLQPAPETFDLFD 406 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHh--cCCEEEEEecCCCHHHHHHhh
Confidence 489999999999999999999999999999999999999999999998542 2589999999974 4444454
No 357
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.9e-31 Score=254.37 Aligned_cols=195 Identities=29% Similarity=0.438 Sum_probs=167.0
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+.+|.+ ..|++++|++|++|+.++|+||+|+|||||+..++||.++++|+|.+||.++.+++.+.+-+.++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 789999999974 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCccc-ccCHHHHhccCCCC-------CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005203 580 FVGQEPKLF-RMDISSNISYGCTQ-------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (709)
Q Consensus 580 ~V~Qd~~LF-~gTI~eNI~~g~~~-------~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (709)
+.-|+.++- .-|++|=..||.-| ..|...|.+|.+--++.+.=. .|= ..||||||||--||-.
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~d----ryL-----d~LSGGQrQRAfIAMV 149 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSD----RYL-----DELSGGQRQRAFIAMV 149 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHH----HhH-----Hhcccchhhhhhhhee
Confidence 999999875 67999999998632 223444556666555433211 110 3699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+.++.+.++||||-.+||.+-...+++.++++..+ -++|+++|=|+..-..+-.|
T Consensus 150 laQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~e--l~KtiviVlHDINfAS~YsD 204 (252)
T COG4604 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADE--LGKTIVVVLHDINFASCYSD 204 (252)
T ss_pred eeccCcEEEecCcccccchHHHHHHHHHHHHHHHH--hCCeEEEEEecccHHHhhhh
Confidence 99999999999999999999999999999988766 37999999999876665444
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=7.5e-30 Score=288.33 Aligned_cols=181 Identities=31% Similarity=0.522 Sum_probs=142.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++|+|++|++ +++|+|+||++.+|++++|||+||||||||+|+|.|..+|++|+|..++. -+|
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 4899999999963 57999999999999999999999999999999999999999999998652 259
Q ss_pred EEEcccCccccc-CHHHHhccCCCCCCCHHHHHHHHHH-----------------------------HhhHHHHHcCCCC
Q 005203 579 GFVGQEPKLFRM-DISSNISYGCTQDIKQQDIEWAAKQ-----------------------------AYAHDFIMSLPSG 628 (709)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~~aa~~-----------------------------a~l~d~I~~LP~G 628 (709)
||++|++.+.++ |+.|.+..+.. . ..++....+. +.+..-...+ |
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g 143 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFG-E--LRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--G 143 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhH-H--HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--C
Confidence 999999999966 99999987743 1 1111111111 1111111111 2
Q ss_pred cccccCC-CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 629 YETLVDD-DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 629 ydT~vGe-~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
+...-.. ++||||||-|++|||||+.+|++|+|||||.|||.++-..+.+.|.+.. | |+|+|||+-.-+.
T Consensus 144 ~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-----g-tviiVSHDR~FLd 214 (530)
T COG0488 144 FPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-----G-TVIVVSHDRYFLD 214 (530)
T ss_pred CCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-----C-cEEEEeCCHHHHH
Confidence 2222011 4899999999999999999999999999999999999999999998763 5 9999999976544
No 359
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-30 Score=249.01 Aligned_cols=188 Identities=26% Similarity=0.406 Sum_probs=160.1
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
++.+|++..-. +..+|.++||++.+||.+-|+||+|||||||+++|+|+.+|++|+|+++|.+++.. .+.+++.+-
T Consensus 3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~-~~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV-RESYHQALL 78 (209)
T ss_pred chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccc-hhhHHHHHH
Confidence 45667776544 46899999999999999999999999999999999999999999999999999864 455688889
Q ss_pred EEcccCccc-ccCHHHHhccCCC--CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCC
Q 005203 580 FVGQEPKLF-RMDISSNISYGCT--QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (709)
Q Consensus 580 ~V~Qd~~LF-~gTI~eNI~~g~~--~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p 656 (709)
|+...+-+= .-|..||+.|... .+.+++.+++|+..+++.++ ..+|-+ +||-||+.|+||||-++..+
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp~~--------~LSAGQqRRvAlArL~ls~~ 149 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLPVG--------QLSAGQQRRVALARLWLSPA 149 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccchh--------hcchhHHHHHHHHHHHcCCC
Confidence 998888775 7799999998753 12568999999999999775 334544 59999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 657 TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
|++||||||++||.+.++.+.+.+.+-.. +|-.||.-||.+--+
T Consensus 150 pLWiLDEP~taLDk~g~a~l~~l~~~H~~---~GGiVllttHq~l~~ 193 (209)
T COG4133 150 PLWILDEPFTALDKEGVALLTALMAAHAA---QGGIVLLTTHQPLPI 193 (209)
T ss_pred CceeecCcccccCHHHHHHHHHHHHHHhc---CCCEEEEecCCccCC
Confidence 99999999999999999999888865432 356899999988654
No 360
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=1e-29 Score=298.68 Aligned_cols=200 Identities=22% Similarity=0.259 Sum_probs=147.4
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC---CCCcceEEECCEeCCCCC--H-
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY---EPTNGQILIDGFPIKEVD--I- 571 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~---~p~~G~I~idG~di~~~~--~- 571 (709)
..|+++|++|+|++ .++|+|+||+|++||++|||||||||||||+++|+|.. .|++|+|.+.++++...+ .
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 35999999999974 35999999999999999999999999999999999864 689999987665432111 1
Q ss_pred -----------HHHhcceEEEcccCcccccCHHHHhccCCCCCCCH----HHHHHHHHHHhhH----------HHHHcCC
Q 005203 572 -----------KWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQ----QDIEWAAKQAYAH----------DFIMSLP 626 (709)
Q Consensus 572 -----------~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~----e~i~~aa~~a~l~----------d~I~~LP 626 (709)
..+++.+++++|++.+...+..+|.........+. +++.++++..++. +.+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 12356689999998776556666653211111122 3344444433321 222222
Q ss_pred CCcccc-cCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 627 SGYETL-VDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 627 ~GydT~-vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
|++.. ... ..||||||||++|||||+.+|++|||||||++||+++...+.+.|+++ +.|+|+|||++..+
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~------~~tviivsHd~~~l 404 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW------PKTFIVVSHAREFL 404 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc------CCEEEEEECCHHHH
Confidence 23211 111 479999999999999999999999999999999999999999999876 37999999999988
Q ss_pred hhhcC
Q 005203 704 ALSFD 708 (709)
Q Consensus 704 ~~~~~ 708 (709)
..-||
T Consensus 405 ~~~~d 409 (718)
T PLN03073 405 NTVVT 409 (718)
T ss_pred HHhCC
Confidence 76665
No 361
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=1.9e-29 Score=265.88 Aligned_cols=199 Identities=27% Similarity=0.393 Sum_probs=163.5
Q ss_pred cEEEEEEEEEcCC-CCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CcceEEECCEeCCCCCHH
Q 005203 499 RIDFVDVSFRYSS-REMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----TNGQILIDGFPIKEVDIK 572 (709)
Q Consensus 499 ~I~~~nVsF~Y~~-~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----~~G~I~idG~di~~~~~~ 572 (709)
-++++|+|..|.. .....+.+++||+|++||++||||+||||||--.+.++||++- -+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 3788898887752 2246799999999999999999999999999999999999965 468999999999989988
Q ss_pred HHhc----ceEEEcccCccc-------ccCHHHHhccCC--CCCCCHHHHHHHHHHHhhHHH---HHcCCCCcccccCCC
Q 005203 573 WLRG----RIGFVGQEPKLF-------RMDISSNISYGC--TQDIKQQDIEWAAKQAYAHDF---IMSLPSGYETLVDDD 636 (709)
Q Consensus 573 ~lR~----~I~~V~Qd~~LF-------~gTI~eNI~~g~--~~~~~~e~i~~aa~~a~l~d~---I~~LP~GydT~vGe~ 636 (709)
.+|+ +|++|+|||.-= ..-|.|-|.+-. ...+-.+++.++++.+|+-+- +.+-| .
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP---------H 156 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP---------H 156 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC---------c
Confidence 8876 799999999631 112445554431 123446778888888887552 22222 4
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 637 LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 637 ~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.||||||||+.||-||..+|++||-||||-|||....++|.+.|+.+.++ .|+.+++|||+|..++..+|
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~--~gMa~lfITHDL~iVr~~AD 226 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE--LGMAILFITHDLGIVRKFAD 226 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH--hCcEEEEEeccHHHHHHhhh
Confidence 69999999999999999999999999999999999999999999998765 47999999999999999887
No 362
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=5.9e-29 Score=247.74 Aligned_cols=192 Identities=26% Similarity=0.500 Sum_probs=165.9
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.+++++|+.+|++ ..+++|+||+++|||..+++||+|+||||.+++|+|+.+|++|+|.++|.|++. ..+.+|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 4789999999974 579999999999999999999999999999999999999999999999999875 667899
Q ss_pred EEEcccCccc-ccCHHHHhccCCC-CCCCHHHHHHHHHHHhhHHHHHcCCC-CcccccCC--CCCChHHHHHHHHHHHhc
Q 005203 579 GFVGQEPKLF-RMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPS-GYETLVDD--DLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 579 ~~V~Qd~~LF-~gTI~eNI~~g~~-~~~~~e~i~~aa~~a~l~d~I~~LP~-GydT~vGe--~~LSGGQkQRIaLARALl 653 (709)
||.|-+--|+ ..|+.|-|.|+.. ...+.+++.+ .+..|.+++.- ||. .+ ..||-|..|+|-+--|++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~~i~~~~---~~kIk~LSKGnqQKIQfisavi 146 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERLEIVGKK---TKKIKELSKGNQQKIQFISAVI 146 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhccccccc---cchHHHhhhhhhHHHHHHHHHh
Confidence 9999999999 6789999998742 3455555543 34567776531 111 12 379999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|+++|||||.|+||+-|.+.+.+.+.+++. +|.|+|+-+||++-+..=||
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk~---~GatIifSsH~Me~vEeLCD 198 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKE---EGATIIFSSHRMEHVEELCD 198 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHHh---cCCEEEEecchHHHHHHHhh
Confidence 99999999999999999999999999999875 48999999999999988887
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=1.4e-27 Score=269.89 Aligned_cols=181 Identities=29% Similarity=0.425 Sum_probs=153.1
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
.-++++||+|+|++. +.+++++||.|++|++||||||+|+|||||+|+|+|-..|.+|+|.++-. + +
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v----------~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V----------K 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------E
Confidence 359999999999753 68999999999999999999999999999999999999999999998532 2 4
Q ss_pred eEEEcccC-ccc-ccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccC
Q 005203 578 IGFVGQEP-KLF-RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 578 I~~V~Qd~-~LF-~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~ 655 (709)
|||..|+- .++ +.|+.|++.-..+ +..+.++...+...+....-..-| | ..||||||-|++||+.++.+
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~-~~~e~~~r~~L~~f~F~~~~~~~~------v--~~LSGGEk~Rl~La~ll~~~ 457 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFP-DGDEQEVRAYLGRFGFTGEDQEKP------V--GVLSGGEKARLLLAKLLLQP 457 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCc-cccHHHHHHHHHHcCCChHHHhCc------h--hhcCHhHHHHHHHHHHhccC
Confidence 99999998 444 4489999987754 555788888877776654433211 1 36999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhh
Q 005203 656 PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALS 706 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~ 706 (709)
|.+|||||||.|||.++-..+.++|.... -|+|+|||+..-+..-
T Consensus 458 pNvLiLDEPTNhLDi~s~~aLe~aL~~f~------Gtvl~VSHDr~Fl~~v 502 (530)
T COG0488 458 PNLLLLDEPTNHLDIESLEALEEALLDFE------GTVLLVSHDRYFLDRV 502 (530)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHhCC------CeEEEEeCCHHHHHhh
Confidence 99999999999999999999999999874 3999999998876543
No 364
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=2.5e-28 Score=245.24 Aligned_cols=157 Identities=24% Similarity=0.351 Sum_probs=124.7
Q ss_pred eeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---------cceEEECCEeCCCCCHHHHhcceEEEcccCcccc
Q 005203 519 QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT---------NGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR 589 (709)
Q Consensus 519 ~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~---------~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~ 589 (709)
+++++++++| .++|+||||||||||++.|.|+..|. .|++.++|.+... ...+++|++|+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence 6789999999 99999999999999999999998665 3478888887654 22467899999999888
Q ss_pred cCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCC
Q 005203 590 MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL----RDPTILILDEAT 665 (709)
Q Consensus 590 gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl----r~p~ILILDEaT 665 (709)
|+. ..++++.++++. +.-.+..+ ..||||||||++||||+. ++|++++|||||
T Consensus 89 --------~~~---~~~~~~~~~l~~----------~~~~~~~~--~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 89 --------YSI---ISQGDVSEIIEA----------PGKKVQRL--SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred --------eeE---EehhhHHHHHhC----------CCccccch--hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 321 123455555444 11122221 479999999999999985 577999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 666 SALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 666 SaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++||+++...+.+.|+++.+ +.|+|+|||+++.+. .+|
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~----~~tiIiitH~~~~~~-~~d 183 (197)
T cd03278 146 AALDDANVERFARLLKEFSK----ETQFIVITHRKGTME-AAD 183 (197)
T ss_pred ccCCHHHHHHHHHHHHHhcc----CCEEEEEECCHHHHh-hcc
Confidence 99999999999999998854 389999999999764 455
No 365
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.7e-27 Score=234.92 Aligned_cols=193 Identities=30% Similarity=0.375 Sum_probs=160.8
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCcceEEECCEeCCCCCHH-HHh
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL--YEPTNGQILIDGFPIKEVDIK-WLR 575 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl--~~p~~G~I~idG~di~~~~~~-~lR 575 (709)
-++++|++.+-.++ +.||+++||+|++||+.||.||+|||||||.+.|+|. |++++|+|++||+||.+++++ .-|
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 37899999987642 4799999999999999999999999999999999997 599999999999999999876 567
Q ss_pred cceEEEcccCccccc-CHHHHhccCCCC-----C---CCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005203 576 GRIGFVGQEPKLFRM-DISSNISYGCTQ-----D---IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (709)
Q Consensus 576 ~~I~~V~Qd~~LF~g-TI~eNI~~g~~~-----~---~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (709)
.-|..-+|.|.=++| |+.+=++.+... . ...+++.++++..++++.... -.|+ ..+|||+|.|.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~------R~vN-~GFSGGEkKR~ 153 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE------RYVN-EGFSGGEKKRN 153 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhh------cccC-CCcCcchHHHH
Confidence 779999999999988 466555433210 1 225677778888887773321 1121 25999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 647 aLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
-|+.+++-+|++.|||||-|+||.++-+.|.+.+++++.. ++++++|||.....
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~---~~~~liITHy~rll 207 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE---GRGVLIITHYQRLL 207 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC---CCeEEEEecHHHHH
Confidence 9999999999999999999999999999999999999754 79999999998654
No 366
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.95 E-value=4.2e-24 Score=218.81 Aligned_cols=270 Identities=23% Similarity=0.323 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 185 FAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLL---ILLCVTSGICSGLRGCCFGIANMILVKRMRETLY 261 (709)
Q Consensus 185 ~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll---~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf 261 (709)
+.+++++++..++.+..|.+++..++.....+.........+. ..+.++.........+.......++..++|.+++
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788888898888877543222111011111111 1122223334445555667888999999999999
Q ss_pred HHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005203 262 SALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIY 341 (709)
Q Consensus 262 ~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~ 341 (709)
+|++++|.+||+++++||+++|+++|++.+++.+...+...+.+++..++.+++++.+||++++++++..|++.++...+
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 342 GLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVI 421 (709)
Q Consensus 342 ~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 421 (709)
.+..++..++..+..++..+.+.|.++|+++||+||.|+++.+|+++..++..+...+..+...........+..+..++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (275)
T PF00664_consen 162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVL 241 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888899999999999999999999999999999999999999988888888888888888888888899
Q ss_pred HHHHHHHH-HHhCCcCHHHHHHHHHHHHHHHHHH
Q 005203 422 AVLIGGMF-IMRGNITAEQLTKFILYSEWLIYST 454 (709)
Q Consensus 422 vl~~ga~l-V~~G~lt~G~l~af~~y~~~~~~~~ 454 (709)
++++|+++ +.+|++|+|.+++++.|..++..|+
T Consensus 242 ~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 242 ILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 99999999 9999999999999999999887764
No 367
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=2e-27 Score=227.08 Aligned_cols=194 Identities=25% Similarity=0.404 Sum_probs=152.3
Q ss_pred EEEEEEEEEcCC------CCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHH
Q 005203 500 IDFVDVSFRYSS------REMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW 573 (709)
Q Consensus 500 I~~~nVsF~Y~~------~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~ 573 (709)
++++|+|..+.. +....+.+.|||+.++|+++||+|++|||||||+|.|.|..+|++|+|++||+++.-=|...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 466677543321 12345789999999999999999999999999999999999999999999999998656555
Q ss_pred HhcceEEEcccCc-----------ccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHH
Q 005203 574 LRGRIGFVGQEPK-----------LFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQ 642 (709)
Q Consensus 574 lR~~I~~V~Qd~~-----------LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQ 642 (709)
--++|-.++|||. +.++.++-|=.+- + ....++|.+-++.+|+..+ .+-+--..||-||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~-~-~~R~~~i~~TL~~VGL~Pd--------han~~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLE-P-EQRRKQIFETLRMVGLLPD--------HANYYPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCC-h-HHHHHHHHHHHHHhccCcc--------ccccchhhcCchh
Confidence 5667999999984 3344444443333 2 4556788889999887432 1222235799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 643 kQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
|||+||||||.-+|+|+|-|||-.+||..-..++.+....+.+. .|..-|.|+..+-.|.-
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek--~GiSyiYV~QhlG~iKH 215 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEK--QGISYIYVTQHIGMIKH 215 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHH--hCceEEEEechhhHhhh
Confidence 99999999999999999999999999999999998887666543 37899999988876653
No 368
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=2e-27 Score=229.64 Aligned_cols=194 Identities=25% Similarity=0.417 Sum_probs=160.1
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC-EeCCCCCHHHH-hc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG-FPIKEVDIKWL-RG 576 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG-~di~~~~~~~l-R~ 576 (709)
.++++|||.++++ -.+|+|+||+|.+||.-+|+||+|+||||++..|.|.-+|++|+++++| .|++.++.... |.
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 4789999999985 4699999999999999999999999999999999999999999999999 99999886654 56
Q ss_pred ceEEEcccCccc-ccCHHHHhccCCCC-------------CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHH
Q 005203 577 RIGFVGQEPKLF-RMDISSNISYGCTQ-------------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQ 642 (709)
Q Consensus 577 ~I~~V~Qd~~LF-~gTI~eNI~~g~~~-------------~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQ 642 (709)
-||==+|.|..| +-|++||+-+.... ....++|.+.+...++.|.-..+ ...||.||
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~---------A~~LSHGq 152 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL---------AALLSHGQ 152 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh---------hhhhccch
Confidence 699999999999 66999999765321 11223555555555544432211 14799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 643 kQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++.|+--+.++|++|+||||++++-.+.....-+.|+++.+ ++++++|-|++.-++.-+|
T Consensus 153 KQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~----~hsilVVEHDM~Fvr~~A~ 214 (249)
T COG4674 153 KQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG----KHSILVVEHDMGFVREIAD 214 (249)
T ss_pred hhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc----CceEEEEeccHHHHHHhhh
Confidence 9999999999999999999999999987777788888988875 4999999999988775443
No 369
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=3.7e-27 Score=239.64 Aligned_cols=183 Identities=19% Similarity=0.211 Sum_probs=138.9
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEec-CCcEEEEEcCCCCcHHHHHHHHh-cCCCCCcceEEECCEeCCCCCHHHHhc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVN-PGEVVAIAGLSGSGKSTLVNLLL-RLYEPTNGQILIDGFPIKEVDIKWLRG 576 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~-~Ge~vAIVG~SGsGKSTLlkLLl-gl~~p~~G~I~idG~di~~~~~~~lR~ 576 (709)
.|+++|.. +|.+. ++++|+.. +|+.++|+||||||||||+++|. ++|.+..+....+ .+...+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58999998 87642 56677654 59999999999999999999999 5777777777665 2233445556778
Q ss_pred ceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCC-cccccCC--CCCChHHHHHHHHHHHhc
Q 005203 577 RIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSG-YETLVDD--DLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 577 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~G-ydT~vGe--~~LSGGQkQRIaLARALl 653 (709)
.|++++|++ +....+++++ ..+.++..++.. ++.| +++.+.. .+||||||||++|||||.
T Consensus 77 ~v~~~f~~~----~~~~~~~r~~---gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~ 139 (213)
T cd03279 77 EVSFTFQLG----GKKYRVERSR---GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALA 139 (213)
T ss_pred EEEEEEEEC----CeEEEEEEec---CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHH
Confidence 899999998 4444455554 445555554321 1222 3444443 479999999999999997
Q ss_pred c----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcCC
Q 005203 654 R----------DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFDC 709 (709)
Q Consensus 654 r----------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~~ 709 (709)
. +|++++|||||++||+++...+.+.|+++.++ ++|+|+|||+++.+...+|+
T Consensus 140 ~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~---~~tii~itH~~~~~~~~~~~ 202 (213)
T cd03279 140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE---NRMVGVISHVEELKERIPQR 202 (213)
T ss_pred hHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC---CCEEEEEECchHHHHhhCcE
Confidence 5 57899999999999999999999999888642 58999999999988877663
No 370
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=5.5e-27 Score=240.52 Aligned_cols=177 Identities=23% Similarity=0.296 Sum_probs=109.9
Q ss_pred CCccceeeeEEecCCcEEEEEcCCCCcHHHHH-HHHhcCCCCCcceEEECC-------EeC---CCCCHHHHhc-ceEEE
Q 005203 514 MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLV-NLLLRLYEPTNGQILIDG-------FPI---KEVDIKWLRG-RIGFV 581 (709)
Q Consensus 514 ~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLl-kLLlgl~~p~~G~I~idG-------~di---~~~~~~~lR~-~I~~V 581 (709)
+.++|+|+||+|++||++||+||||||||||+ ..+. .+|++.+.+ ..+ ...+....+. ..++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 36799999999999999999999999999995 4443 134433210 011 0001111221 23344
Q ss_pred cccCc-ccc--cC---HHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCccc-ccCC--CCCChHHHHHHHHHHHh
Q 005203 582 GQEPK-LFR--MD---ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYET-LVDD--DLLSGGQKQRIAIARAI 652 (709)
Q Consensus 582 ~Qd~~-LF~--gT---I~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT-~vGe--~~LSGGQkQRIaLARAL 652 (709)
.|++. .++ .+ +.+...+... -...++..+ ..+.+..+. +.. .... ..||||||||++|||||
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~------~~~~l~~~~--l~~~~~~~~~~~LSgG~~qrv~laral 152 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRL-LFARVGIRE------RLGFLVDVG--LGYLTLSRSAPTLSGGEAQRIRLATQI 152 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHH-HhhhhhHHH------HHHHHHHCC--CCcccccCccCcCCHHHHHHHHHHHHH
Confidence 44432 111 12 2222211100 000111111 123334332 222 1222 47999999999999999
Q ss_pred ccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDP--TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+++| ++|||||||++||+.+...+.+.|+++.+. |.|+|+|||+++.+. .+|
T Consensus 153 ~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~---g~tii~itH~~~~~~-~~d 206 (226)
T cd03270 153 GSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDL---GNTVLVVEHDEDTIR-AAD 206 (226)
T ss_pred HhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhC---CCEEEEEEeCHHHHH-hCC
Confidence 9998 599999999999999999999999887532 689999999999764 344
No 371
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.6e-26 Score=217.85 Aligned_cols=196 Identities=27% Similarity=0.420 Sum_probs=150.4
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC-----EeCCCCCHHH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG-----FPIKEVDIKW 573 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG-----~di~~~~~~~ 573 (709)
-++++++|..|.+. .-.+|+||++-|||..+|||+||||||||+++|.+-+.|++|+|.++- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 47899999999853 468999999999999999999999999999999999999999999965 3444444333
Q ss_pred ----HhcceEEEcccCcccccCHHHHhccCCC--CCCCHHHHHHH------HHHHhhHHHHHcCCCCcccccCC--CCCC
Q 005203 574 ----LRGRIGFVGQEPKLFRMDISSNISYGCT--QDIKQQDIEWA------AKQAYAHDFIMSLPSGYETLVDD--DLLS 639 (709)
Q Consensus 574 ----lR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~~~~~e~i~~a------a~~a~l~d~I~~LP~GydT~vGe--~~LS 639 (709)
+|.--|+|.|+|. |-+++.-. .++. |++.+. --.+.+.||.++..-.. +.+.| ..+|
T Consensus 83 RR~L~RTeWG~VhQnP~-------DGLRm~VSAG~NiG-ERlma~G~RHYG~iR~~a~~WL~~VEI~~-~RiDD~PrtFS 153 (258)
T COG4107 83 RRRLLRTEWGFVHQNPR-------DGLRMQVSAGGNIG-ERLMAIGARHYGNIRAEAQDWLEEVEIDL-DRIDDLPRTFS 153 (258)
T ss_pred HHHHhhhccceeecCcc-------ccceeeeccCCccc-hhHHhhhhhhhhhHHHHHHHHHHhcccCc-ccccCcccccc
Confidence 4556899999994 33322111 0111 222211 11233557777654332 34455 6999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 640 GGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||.+||+-|||-|...|+++++||||-+||..-.+++.+.++.+-.+ -+..++||||++...++..|
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~--l~la~viVTHDl~VarLla~ 220 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDLAVARLLAD 220 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHh--cCceEEEEechhHHHHHhhh
Confidence 99999999999999999999999999999999999999999988765 36899999999998877654
No 372
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.9e-26 Score=218.09 Aligned_cols=193 Identities=30% Similarity=0.443 Sum_probs=138.6
Q ss_pred cEEEEEEEEEcCCC----CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC----EeCCCCC
Q 005203 499 RIDFVDVSFRYSSR----EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG----FPIKEVD 570 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~----~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG----~di~~~~ 570 (709)
.+.++||+.+|.-+ -.-||++|+||++++||++++=||||+|||||++.|-|-|.|++|+|.+-- .|+-.-.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 46788887665321 124799999999999999999999999999999999999999999999842 2443333
Q ss_pred H----HHHhcceEEEcccCcccccC-----HHHH-hccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCCh
Q 005203 571 I----KWLRGRIGFVGQEPKLFRMD-----ISSN-ISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSG 640 (709)
Q Consensus 571 ~----~~lR~~I~~V~Qd~~LF~gT-----I~eN-I~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSG 640 (709)
+ +--|+.||||+|--.....- ++|- +..|-+.+.-.++..+.+...++-+..-+|| ...+||
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La--------PaTFSG 155 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA--------PATFSG 155 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC--------CcccCC
Confidence 2 23356699999943322211 1121 1223221111222222333334444444443 357999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhh
Q 005203 641 GQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 641 GQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
|++||+-|||.+.-+-+||+|||||++||+.|.+.+.+.|.+.+. +|...|=|=|+-+.
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka---~GaAlvGIFHDeev 214 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA---RGAALVGIFHDEEV 214 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHh---cCceEEEeeccHHH
Confidence 999999999999999999999999999999999999999987653 47899999998764
No 373
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=3e-26 Score=238.78 Aligned_cols=178 Identities=29% Similarity=0.396 Sum_probs=125.8
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh-----c-CC----CCCcc-----------eEEECCEeCCCCCHH--
Q 005203 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL-----R-LY----EPTNG-----------QILIDGFPIKEVDIK-- 572 (709)
Q Consensus 516 ~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLl-----g-l~----~p~~G-----------~I~idG~di~~~~~~-- 572 (709)
.-|+|+|++||.|+.++|+|+||||||||++.++ + +. .|.++ -|.+|..|+..-...
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998553 1 22 13322 367777776542211
Q ss_pred --------HHhc----------------ceEEEcccCcc-cccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCC
Q 005203 573 --------WLRG----------------RIGFVGQEPKL-FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPS 627 (709)
Q Consensus 573 --------~lR~----------------~I~~V~Qd~~L-F~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~ 627 (709)
.+|+ .+.|..++... .+-|+.||+.|+.. ....++..++++..++
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~-~~~~~~~~~~L~~vgL--------- 158 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFEN-IPKIARKLQTLCDVGL--------- 158 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHh-hhhHHHHHHHHHHcCC---------
Confidence 1111 13444444443 46688888887742 2222333333333332
Q ss_pred CcccccCC--CCCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhh
Q 005203 628 GYETLVDD--DLLSGGQKQRIAIARAILRD---PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 628 GydT~vGe--~~LSGGQkQRIaLARALlr~---p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
+|. .++. ..||||||||++|||||.++ |+++||||||++||+++...+.+.|+++.+. |.|+|+|+|+++.
T Consensus 159 ~~l-~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~---g~tvIiitH~~~~ 234 (261)
T cd03271 159 GYI-KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK---GNTVVVIEHNLDV 234 (261)
T ss_pred chh-hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCHHH
Confidence 221 2344 48999999999999999996 7999999999999999999999999988643 6899999999998
Q ss_pred hhhhcC
Q 005203 703 TALSFD 708 (709)
Q Consensus 703 i~~~~~ 708 (709)
+. .+|
T Consensus 235 i~-~aD 239 (261)
T cd03271 235 IK-CAD 239 (261)
T ss_pred HH-hCC
Confidence 75 355
No 374
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=5.1e-26 Score=228.62 Aligned_cols=173 Identities=27% Similarity=0.393 Sum_probs=142.7
Q ss_pred CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHH
Q 005203 514 MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDIS 593 (709)
Q Consensus 514 ~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~ 593 (709)
+.|+|+|+||++++||+++|||++|||||||+|+|+|.|+|++|+|.++|.--.-++.. .|+-| +-|-|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg-----~Gf~p------elTGr 107 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELG-----AGFDP------ELTGR 107 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcc-----cCCCc------ccchH
Confidence 46899999999999999999999999999999999999999999999999644333322 22222 35789
Q ss_pred HHhcc-----CCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 005203 594 SNISY-----GCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSAL 668 (709)
Q Consensus 594 eNI~~-----g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaL 668 (709)
|||.+ |-....-++.+.+..+-|.+.|||.. |- ++.|.|.+-||+.|=|.--+|+|||+||..|..
T Consensus 108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-Pv--------ktYSSGM~aRLaFsia~~~~pdILllDEvlavG 178 (249)
T COG1134 108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-PV--------KTYSSGMYARLAFSVATHVEPDILLLDEVLAVG 178 (249)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-ch--------hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcC
Confidence 99963 32223346677788888899999864 42 358999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcCC
Q 005203 669 DAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFDC 709 (709)
Q Consensus 669 D~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~~ 709 (709)
|+.=.++-.+.++++.++ ++|+|+|+|.++.|..-||+
T Consensus 179 D~~F~~K~~~rl~e~~~~---~~tiv~VSHd~~~I~~~Cd~ 216 (249)
T COG1134 179 DAAFQEKCLERLNELVEK---NKTIVLVSHDLGAIKQYCDR 216 (249)
T ss_pred CHHHHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhcCe
Confidence 998877777778777332 48999999999999999985
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=3.3e-26 Score=236.82 Aligned_cols=184 Identities=21% Similarity=0.273 Sum_probs=128.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh----------------cCCCCCcc-----
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL----------------RLYEPTNG----- 557 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLl----------------gl~~p~~G----- 557 (709)
+|+++|- .+|.+ ..++++++ |++++|+||||||||||+++|+ ++..+.+|
T Consensus 3 ~i~~~nf-ksy~~---~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGF-KSYKD---QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCc-cCccc---CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 4666654 23653 45778876 8999999999999999999998 44555555
Q ss_pred ---eEEECCEeCCC-C--CHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHH--HcCCCCc
Q 005203 558 ---QILIDGFPIKE-V--DIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFI--MSLPSGY 629 (709)
Q Consensus 558 ---~I~idG~di~~-~--~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I--~~LP~Gy 629 (709)
+|.+++.+-.. + +...+++.+++++|+..++. ...+.+++..+++..++.+.- ..+|+|.
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~------------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~ 141 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK------------KNVTKNDVMNLLESAGFSRSNPYYIVPQGK 141 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC------------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCc
Confidence 66665532211 0 12345666777777654422 245677788877777664321 0123332
Q ss_pred cccc-------CC--CCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEE
Q 005203 630 ETLV-------DD--DLLSGGQKQRIAIARAIL----RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVI 696 (709)
Q Consensus 630 dT~v-------Ge--~~LSGGQkQRIaLARALl----r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiI 696 (709)
.+.+ ++ ..||||||||++|||||+ ++|++++|||||++||+++.+.+.+.|+++.+ +.|+|++
T Consensus 142 i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~----~~~ii~~ 217 (243)
T cd03272 142 INSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD----GAQFITT 217 (243)
T ss_pred hHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC----CCEEEEE
Confidence 2222 22 489999999999999996 46899999999999999999999999998854 4799999
Q ss_pred ecChhhhhhhcC
Q 005203 697 AHRLISTALSFD 708 (709)
Q Consensus 697 AHRlsti~~~~~ 708 (709)
+|+++.. ..+|
T Consensus 218 ~h~~~~~-~~~d 228 (243)
T cd03272 218 TFRPELL-EVAD 228 (243)
T ss_pred ecCHHHH-hhCC
Confidence 9998754 4444
No 376
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.93 E-value=9e-26 Score=235.12 Aligned_cols=174 Identities=18% Similarity=0.244 Sum_probs=128.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCC-cceEEECCE-eCCCCC-H-HHHhcceEEEcccCcc----------cccCHH
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPT-NGQILIDGF-PIKEVD-I-KWLRGRIGFVGQEPKL----------FRMDIS 593 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl~~p~-~G~I~idG~-di~~~~-~-~~lR~~I~~V~Qd~~L----------F~gTI~ 593 (709)
...++||||||||||||++.|++++.|+ .|+++..|. |+-..+ . ...+..|+++.|++.- -.-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6799999999999999999999999886 568999887 542211 1 1235589999999632 146788
Q ss_pred HHhccCCC-------CCCCHHHHHHHHHHHhhH----H---------HHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 594 SNISYGCT-------QDIKQQDIEWAAKQAYAH----D---------FIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 594 eNI~~g~~-------~~~~~e~i~~aa~~a~l~----d---------~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
+||..+.. .....+++.++++.+++. . .|.+++.-.+..+ ..||||||||++|||||.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~--~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESL--TELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccc--cccCHHHHHHHHHHHHHH
Confidence 88865421 123457777788887764 0 1111111111111 479999999999999997
Q ss_pred ----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 ----RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 ----r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++++|||||++||+++...+.+.|+++.+ |.|+|+||||.+.... +|
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~----g~~ii~iSH~~~~~~~-~d 236 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK----GSQFIVVSLKEGMFNN-AN 236 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC----CCEEEEEECCHHHHHh-CC
Confidence 68899999999999999999999999988754 4899999999887765 44
No 377
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=2.3e-25 Score=242.76 Aligned_cols=184 Identities=22% Similarity=0.286 Sum_probs=151.0
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
.-|.++||+|+|+++ +++++++||-|..++++|+|||+|||||||+|++.|...|+.|.|.-.-... +. .|.++
T Consensus 388 pvi~~~nv~F~y~~~--~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~--~~--~y~Qh 461 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDN--PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK--LP--RYNQH 461 (614)
T ss_pred CeEEEeccccCCCCc--chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccccc--ch--hhhhh
Confidence 358999999999864 5999999999999999999999999999999999999999999987543321 11 22222
Q ss_pred eEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCC
Q 005203 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT 657 (709)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ 657 (709)
.++-..++-|..||+.=--++.-..|++...+...|+..+.+..|++ +||+|||-|++.||+.+++|.
T Consensus 462 ----~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~--------~LS~Gqr~rVlFa~l~~kqP~ 529 (614)
T KOG0927|consen 462 ----LAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMS--------QLSDGQRRRVLFARLAVKQPH 529 (614)
T ss_pred ----hHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchh--------hcccccchhHHHHHHHhcCCc
Confidence 23445678888888752212135678889999999988777666654 699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 658 ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
||+|||||+|||.++-....++|.... -++|.|+|+.-.|..
T Consensus 530 lLlLDEPtnhLDi~tid~laeaiNe~~------Ggvv~vSHDfrlI~q 571 (614)
T KOG0927|consen 530 LLLLDEPTNHLDIETIDALAEAINEFP------GGVVLVSHDFRLISQ 571 (614)
T ss_pred EEEecCCCcCCCchhHHHHHHHHhccC------CceeeeechhhHHHH
Confidence 999999999999999999999998764 489999999876653
No 378
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=5.4e-25 Score=222.77 Aligned_cols=184 Identities=26% Similarity=0.361 Sum_probs=134.7
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEc-ccCccc-ccCH
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVG-QEPKLF-RMDI 592 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~-Qd~~LF-~gTI 592 (709)
-++.+|+||+||||++++.+||+|+||||++|+|.|+..|++|.|.++|.+=-. +.+++-+++++|+ |...|. .-.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechh
Confidence 458899999999999999999999999999999999999999999999987543 4566666677765 333321 1112
Q ss_pred HHHhccCCC-CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 005203 593 SSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALD 669 (709)
Q Consensus 593 ~eNI~~g~~-~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD 669 (709)
.|-+..-.. -++++++..+ .+.++++- .+++..+-. +.||=|||-|.-||-||+++|++|+|||||=+||
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~-----r~~~l~ei--Ldl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLD 188 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAE-----RLDFLTEI--LDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD 188 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHH-----HHHHHHHH--hcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcc
Confidence 222211000 0122222211 11111111 234544544 5899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 670 AESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 670 ~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
......|.+.+++.... .++|++.-||.++-|+.=||
T Consensus 189 V~aq~~ir~Flke~n~~--~~aTVllTTH~~~di~~lc~ 225 (325)
T COG4586 189 VNAQANIREFLKEYNEE--RQATVLLTTHIFDDIATLCD 225 (325)
T ss_pred hhHHHHHHHHHHHHHHh--hCceEEEEecchhhHHHhhh
Confidence 99999999999876543 46999999999998887665
No 379
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=4.5e-25 Score=224.15 Aligned_cols=178 Identities=19% Similarity=0.222 Sum_probs=131.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHh-cc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLR-GR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR-~~ 577 (709)
.|+++|.- +|.+ ..+++++++ +.++|+|||||||||++++|. .++|.+.. ..| ++
T Consensus 5 ~l~l~nfk-~~~~---~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYAG---EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKK 60 (212)
T ss_pred EEEEECcc-cCCC---CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----Hhhhhh
Confidence 57888875 7863 468999987 899999999999999999997 44564432 333 67
Q ss_pred eEEEcccCccccc-CHHHHhccCCCCCCCHHHHH-----HHHHH----HhhHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005203 578 IGFVGQEPKLFRM-DISSNISYGCTQDIKQQDIE-----WAAKQ----AYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (709)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~-----~aa~~----a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (709)
+++++|+..++.. |.++++.++.. ....+.+. ..... .+--..+..||++.++.++ .||||||||++
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~--~lS~G~~~r~~ 137 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQE-IIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS--NLSGGEKTLSS 137 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEe-CCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh--hcCHHHHHHHH
Confidence 9999999887765 78888877742 11111000 00000 0111245567777777654 69999999999
Q ss_pred HHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 648 IARAIL----RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 648 LARALl----r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||++ ++|++++|||||++||+++...+.+.++++.+ +.|+|+|||+++... -+|
T Consensus 138 la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~----~~~~iivs~~~~~~~-~~d 197 (212)
T cd03274 138 LALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK----NAQFIVISLRNNMFE-LAD 197 (212)
T ss_pred HHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC----CCEEEEEECcHHHHH-hCC
Confidence 999996 35899999999999999999999999998864 379999999986543 344
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.90 E-value=4.8e-24 Score=215.37 Aligned_cols=155 Identities=23% Similarity=0.326 Sum_probs=120.3
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHh----cCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccC-----cccc-cC
Q 005203 522 NISVNPGEVVAIAGLSGSGKSTLVNLLL----RLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEP-----KLFR-MD 591 (709)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLl----gl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~-----~LF~-gT 591 (709)
++++.+| +++|+||||||||||++.|. |...|..|.+.-+...+ .....+..|++++|++ .++. -|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i---~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLI---REGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHH---hCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4667788 99999999999999999984 99999888776222222 2235677899999998 4443 29
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHH------HHHHHHhccCCCEEEEeCCC
Q 005203 592 ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR------IAIARAILRDPTILILDEAT 665 (709)
Q Consensus 592 I~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQR------IaLARALlr~p~ILILDEaT 665 (709)
+.||+.+. + ++++.+.+ .+.| ..|||||+|| ++||||+..+|++++|||||
T Consensus 93 ~~~~~~~~-~----~~~~~~~~---------~~~~---------~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~ 149 (204)
T cd03240 93 ILENVIFC-H----QGESNWPL---------LDMR---------GRCSGGEKVLASLIIRLALAETFGSNCGILALDEPT 149 (204)
T ss_pred Hhhceeee-c----hHHHHHHH---------hcCc---------cccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCc
Confidence 99999875 2 33333222 1111 4799999996 79999999999999999999
Q ss_pred CCCCHHHHH-HHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 666 SALDAESEH-NIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 666 SaLD~~tE~-~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
++||+++.. .+.+.|+++.++ .++|+|+|||.++.+..
T Consensus 150 ~~LD~~~~~~~l~~~l~~~~~~--~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 150 TNLDEENIEESLAEIIEERKSQ--KNFQLIVITHDEELVDA 188 (204)
T ss_pred cccCHHHHHHHHHHHHHHHHhc--cCCEEEEEEecHHHHhh
Confidence 999999999 999999887541 14799999999987653
No 381
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.90 E-value=1e-23 Score=254.07 Aligned_cols=197 Identities=22% Similarity=0.436 Sum_probs=165.9
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC-CHHHHhc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV-DIKWLRG 576 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~-~~~~lR~ 576 (709)
..+..+|++..|+... . +.+++|+.|++||+.++-|++||||||.+|+|.|..+|++|++.++|.++..- +.++.|+
T Consensus 563 ~~~~~~~L~k~y~~~~-~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD-G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchh-h-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 3588999999998653 2 99999999999999999999999999999999999999999999999999754 5557999
Q ss_pred ceEEEcccCccc-ccCHHHHhccCCC-CCCCHHH----HHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 577 RIGFVGQEPKLF-RMDISSNISYGCT-QDIKQQD----IEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 577 ~I~~V~Qd~~LF-~gTI~eNI~~g~~-~~~~~e~----i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
++||.||++.|+ .-|.||.+.+... +.....+ +.+.++..++.++... . .+++|||+|.|+.+|-
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~-------~--~~~ySgG~kRkLs~ai 711 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK-------Q--VRTYSGGNKRRLSFAI 711 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc-------c--hhhCCCcchhhHHHHH
Confidence 999999999999 6789999976531 2223333 4555566665554332 2 3579999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++-+|++++|||||+++|+++++.+.+.|++++++ ++.+|..||-.+....=||
T Consensus 712 alig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~---g~aiiLTSHsMeE~EaLCt 766 (885)
T KOG0059|consen 712 ALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN---GKAIILTSHSMEEAEALCT 766 (885)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc---CCEEEEEcCCHHHHHHHhh
Confidence 999999999999999999999999999999999875 4599999999987765555
No 382
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=8.2e-23 Score=242.23 Aligned_cols=192 Identities=26% Similarity=0.434 Sum_probs=155.3
Q ss_pred EEEEEEEEEcCC-CCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC--CCcceEEECCEeCCCCCHHHHhc
Q 005203 500 IDFVDVSFRYSS-REMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE--PTNGQILIDGFPIKEVDIKWLRG 576 (709)
Q Consensus 500 I~~~nVsF~Y~~-~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~--p~~G~I~idG~di~~~~~~~lR~ 576 (709)
...+|+.|.-+. .+...+|+|||=-++||..+|++|+||||||||+++|+|=-. ..+|+|+|||.|..+ +.+++
T Consensus 788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R 864 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFAR 864 (1391)
T ss_pred EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhcc
Confidence 334555554321 134679999999999999999999999999999999997643 357999999999765 78999
Q ss_pred ceEEEcccC-cccccCHHHHhccCC----CCCCCHHH----HHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHH
Q 005203 577 RIGFVGQEP-KLFRMDISSNISYGC----TQDIKQQD----IEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQR 645 (709)
Q Consensus 577 ~I~~V~Qd~-~LF~gTI~eNI~~g~----~~~~~~e~----i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQR 645 (709)
.+|||.|+| |+=.-||||-+.|.. |++.++++ ++++.+..++.+. =|.+||+ +.||..||.|
T Consensus 865 ~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKr 937 (1391)
T KOG0065|consen 865 VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKR 937 (1391)
T ss_pred ccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhce
Confidence 999999877 466889999998653 33555443 3444444444333 4667887 6999999999
Q ss_pred HHHHHHhccCC-CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 646 IAIARAILRDP-TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 646 IaLARALlr~p-~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
+.||=-|.-|| .||+||||||+||+++...|.+.++++.. .|+|++.-=|.||...
T Consensus 938 LTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~---tGqtIlCTIHQPS~~i 994 (1391)
T KOG0065|consen 938 LTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD---TGQTILCTIHQPSIDI 994 (1391)
T ss_pred eeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh---cCCeEEEEecCCcHHH
Confidence 99999999999 99999999999999999999999999875 4899999999998654
No 383
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=5.9e-23 Score=213.52 Aligned_cols=176 Identities=19% Similarity=0.199 Sum_probs=124.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEe-C-C-----CCCHHHHhcceEEEcccC--cccccCHHHHhc-c
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFP-I-K-----EVDIKWLRGRIGFVGQEP--KLFRMDISSNIS-Y 598 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~d-i-~-----~~~~~~lR~~I~~V~Qd~--~LF~gTI~eNI~-~ 598 (709)
..++|+||||||||||+..|.++..|+.|++..++.+ + . ..+.....-.+.+..|++ .++..+++++-. |
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998888888765432 1 1 111223344455555553 345555555432 1
Q ss_pred C-CCCCCCHHHHHHHHHHHhhHHHHHc--CCCCcccccCC-----------CCCChHHHHHHHHHHHhcc----CCCEEE
Q 005203 599 G-CTQDIKQQDIEWAAKQAYAHDFIMS--LPSGYETLVDD-----------DLLSGGQKQRIAIARAILR----DPTILI 660 (709)
Q Consensus 599 g-~~~~~~~e~i~~aa~~a~l~d~I~~--LP~GydT~vGe-----------~~LSGGQkQRIaLARALlr----~p~ILI 660 (709)
+ +....+.+++.+.++..+++.+... +|+|-=+.+.+ ..||||||||++||||++. +|++++
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 1 1225678888889999988532111 12222222211 3699999999999999975 499999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 661 LDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 661 LDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||++||+++...+.+.|+++.++ |.|+|+|||+++.+.. +|
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~---g~~vi~isH~~~~~~~-~d 226 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGP---NFQFIVISLKEEFFSK-AD 226 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccC---CcEEEEEECCHHHHhh-CC
Confidence 99999999999999999999988642 5899999999887643 44
No 384
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.87 E-value=1.9e-21 Score=215.55 Aligned_cols=198 Identities=27% Similarity=0.476 Sum_probs=165.0
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC-HHHHhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-IKWLRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~-~~~lR~~ 577 (709)
.++++|++.. ..++|+||++.+||+++|.|-=|||+|-+++.|.|..++.+|+|.+||+++.--+ .+..+.-
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 4678887642 2578999999999999999999999999999999999999999999999987766 4588889
Q ss_pred eEEEcccCc----ccccCHHHHhccCCCCCCCHH-HHHHHHHHHhhHHHHHcCCCCcccccCC---CCCChHHHHHHHHH
Q 005203 578 IGFVGQEPK----LFRMDISSNISYGCTQDIKQQ-DIEWAAKQAYAHDFIMSLPSGYETLVDD---DLLSGGQKQRIAIA 649 (709)
Q Consensus 578 I~~V~Qd~~----LF~gTI~eNI~~g~~~~~~~e-~i~~aa~~a~l~d~I~~LP~GydT~vGe---~~LSGGQkQRIaLA 649 (709)
|+|||-|=. +...||++||++...+..... .+....+.+-+.+++.+|- ..|.=-+ .+||||-+|++.||
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~--Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLR--IKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcC--cccCCccchhhcCCchhhhhHHHH
Confidence 999997643 558899999998732111111 4666777777888888864 3332222 48999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 650 RAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 650 RALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|.|+.+|++|||||||-+.|.-+.+.|.+.|+++.++ |+++|+||-.+..+..-||
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~---G~ail~iSSElpEll~~~D 469 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE---GKAILMISSELPELLGLSD 469 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC---CCEEEEEeCChHHHHhhCC
Confidence 9999999999999999999999999999999998865 8999999999988887766
No 385
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.87 E-value=1.1e-21 Score=243.48 Aligned_cols=189 Identities=25% Similarity=0.368 Sum_probs=131.6
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHH---------HHhcCCCCCcc--------eEEE
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVN---------LLLRLYEPTNG--------QILI 561 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlk---------LLlgl~~p~~G--------~I~i 561 (709)
.++++|++. ..|+|+|++|++||.++|+|+||||||||++ .|.|...|..+ -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 588888852 3699999999999999999999999999999 56665433211 2466
Q ss_pred CCEeCCCCCH----------HHHh---------cceE-----EEccc------------------C--------------
Q 005203 562 DGFPIKEVDI----------KWLR---------GRIG-----FVGQE------------------P-------------- 585 (709)
Q Consensus 562 dG~di~~~~~----------~~lR---------~~I~-----~V~Qd------------------~-------------- 585 (709)
|-.++..-.. +++| +..| +.+|. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 6665543211 1444 1111 12221 1
Q ss_pred ------ccc-ccCHHHHhccCCCCCC-----CHHHHHHHHHHHhhHHHHHcCCCCcccc-cCC--CCCChHHHHHHHHHH
Q 005203 586 ------KLF-RMDISSNISYGCTQDI-----KQQDIEWAAKQAYAHDFIMSLPSGYETL-VDD--DLLSGGQKQRIAIAR 650 (709)
Q Consensus 586 ------~LF-~gTI~eNI~~g~~~~~-----~~e~i~~aa~~a~l~d~I~~LP~GydT~-vGe--~~LSGGQkQRIaLAR 650 (709)
..+ .-||.||+.++-. ++ +.+++.+.++ .+..+ |++.. .+. .+||||||||++|||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~-ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAr 822 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAY-EAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAY 822 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHH-HHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHH
Confidence 122 3478898887632 11 1233333321 22322 55544 455 589999999999999
Q ss_pred Hhc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AIL---RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALl---r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+ ++|++|||||||++||.++.+.+.+.|+++.+. |.|+|+|+|+++.+ ..+|
T Consensus 823 aL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~---G~TVIiIsHdl~~i-~~aD 879 (1809)
T PRK00635 823 ELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ---GHTVVIIEHNMHVV-KVAD 879 (1809)
T ss_pred HHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHH-HhCC
Confidence 998 699999999999999999999999999988643 68999999999987 5555
No 386
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.87 E-value=1.3e-22 Score=192.97 Aligned_cols=182 Identities=23% Similarity=0.354 Sum_probs=150.5
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
++++||+..- -|-.+|.++.+||.+=+|||+|||||||+.-|.|+. |-+|+|.++|.|+..+...++-++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 5677776531 256689999999999999999999999999999998 57899999999999999999999999
Q ss_pred EEcccC-cccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcc--
Q 005203 580 FVGQEP-KLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR-- 654 (709)
Q Consensus 580 ~V~Qd~-~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr-- 654 (709)
|..|+. -.|...+-.-+++..|...--+++.+.|++.++.| .+|. +.||||+.||+-+|-..++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~D-----------KL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD-----------KLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccc-----------hhhhhhhhcCcccceeeEEeEEEEEec
Confidence 988754 58999999999998763333345555555555444 4444 4799999999999988876
Q ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 655 -----DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 655 -----~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
..++|++|||.+.||...+..+-..|.++... |.|+|+-.|++.-.
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~---G~~vims~HDLNhT 195 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ---GLAIVMSSHDLNHT 195 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhC---CcEEEEeccchhhH
Confidence 25799999999999999999999999888754 89999999999643
No 387
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.85 E-value=5e-21 Score=228.98 Aligned_cols=197 Identities=26% Similarity=0.321 Sum_probs=125.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh---------cCCCCCcce-----------
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL---------RLYEPTNGQ----------- 558 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLl---------gl~~p~~G~----------- 558 (709)
.|+++|++. ..|+|+|++|++||.++|+|+||||||||++-++ +-..|..+.
T Consensus 614 ~L~v~~l~~--------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 685 (943)
T PRK00349 614 FLKLKGARE--------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDK 685 (943)
T ss_pred eEEecCCcc--------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCc
Confidence 488888851 2589999999999999999999999999998654 212223333
Q ss_pred -EEECCEeCCC---------CC-HHHHhcc---------eEEEcccCcccc-----------cCHHHHhccCCCC-----
Q 005203 559 -ILIDGFPIKE---------VD-IKWLRGR---------IGFVGQEPKLFR-----------MDISSNISYGCTQ----- 602 (709)
Q Consensus 559 -I~idG~di~~---------~~-~~~lR~~---------I~~V~Qd~~LF~-----------gTI~eNI~~g~~~----- 602 (709)
|.||-.|+.. .+ .+.+|+. .+|.++.-.+.+ |++..|+.|..+-
T Consensus 686 ~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~ 765 (943)
T PRK00349 686 VIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCD 765 (943)
T ss_pred eEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCc
Confidence 3343333321 00 1223332 233333322222 4455444442110
Q ss_pred -----------------CCCHHH-----HHHHHHHH-------hhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHH
Q 005203 603 -----------------DIKQQD-----IEWAAKQA-------YAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARA 651 (709)
Q Consensus 603 -----------------~~~~e~-----i~~aa~~a-------~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARA 651 (709)
..+-.+ +.++++.. ...+.+..+..||.+ ++. ..||||||||+.||||
T Consensus 766 ~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~-l~~~~~tLSgGEkQRl~LAra 844 (943)
T PRK00349 766 VCKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIK-LGQPATTLSGGEAQRVKLAKE 844 (943)
T ss_pred cccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhhHHHHHHHHCCCCccc-ccCCcccCCHHHHHHHHHHHH
Confidence 001111 11111111 122344444444432 344 5899999999999999
Q ss_pred hccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDP---TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p---~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|.++| +++||||||++||.++...+.+.|+++.+. |.|+|+|+|+++.+. .+|
T Consensus 845 L~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~---G~TVIiitH~~~~i~-~aD 900 (943)
T PRK00349 845 LSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK---GNTVVVIEHNLDVIK-TAD 900 (943)
T ss_pred HhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHH-hCC
Confidence 99999 999999999999999999999999988642 689999999999875 355
No 388
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=3.2e-21 Score=204.51 Aligned_cols=176 Identities=28% Similarity=0.406 Sum_probs=133.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-+-+.||+|.||+. .|.+++++|-|.--..||||||+|.|||||++||.|-++|++|+.+= .-|-+|
T Consensus 586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RK-----------nhrL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRK-----------NHRLRI 652 (807)
T ss_pred eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhc-----------cceeee
Confidence 46789999999974 68999999999999999999999999999999999999999998753 334567
Q ss_pred EEEcccCc--c-cccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccC
Q 005203 579 GFVGQEPK--L-FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 579 ~~V~Qd~~--L-F~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~ 655 (709)
|.-.|..- | -..|-.|-+.-. - +.+.++-..|+-.-|+...- +| |-=..||||||-|+++|---++.
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~-F-Nlpyq~ARK~LG~fGL~sHA-------HT-ikikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRK-F-NLPYQEARKQLGTFGLASHA-------HT-IKIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHh-c-CCChHHHHHHhhhhhhhhcc-------ce-EeeeecCCcchHHHHHHHHhcCC
Confidence 77777542 1 122333333211 0 33445555554444432211 11 11147999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 656 PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
|++|||||||.+||.++-..+.++|+... -.||+|+|+-..|
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney~------GgVi~VsHDeRLi 764 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEYN------GGVIMVSHDERLI 764 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhcc------CcEEEEeccccee
Confidence 99999999999999999999999998874 3799999987654
No 389
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=7e-21 Score=206.92 Aligned_cols=183 Identities=23% Similarity=0.296 Sum_probs=151.5
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
+.+++.+|+|.|++++ ++++.+++++++.-+++++||++|+||||++|++.|-..|+.|.+-+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 4699999999998753 5899999999999999999999999999999999999999999888754 556
Q ss_pred eEEEcccCccc-ccCHHH--Hh-ccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 578 IGFVGQEPKLF-RMDISS--NI-SYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 578 I~~V~Qd~~LF-~gTI~e--NI-~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
|+|-.|.-.=| +-.+.+ -. ..+ | ..++|++++.+...|+...+..-|+ ..||||||=|+++|-...
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~-p-G~~~ee~r~hl~~~Gl~g~la~~si--------~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSF-P-GKTEEEIRRHLGSFGLSGELALQSI--------ASLSGGQKSRVAFAACTW 498 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhC-C-CCCHHHHHHHHHhcCCCchhhhccc--------cccCCcchhHHHHHHHhc
Confidence 77777765433 222211 11 122 3 5589999999999988777665432 259999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.+|.+|||||||.+||.++-..+-++|+... --||+|||+.+-|...|+
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~------GGVv~VSHd~~fi~~~c~ 547 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNFN------GGVVLVSHDEEFISSLCK 547 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhcC------CcEEEEECcHHHHhhcCc
Confidence 9999999999999999999999999999875 369999999999988775
No 390
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3.9e-21 Score=208.85 Aligned_cols=175 Identities=24% Similarity=0.296 Sum_probs=126.4
Q ss_pred CCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhc
Q 005203 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG 576 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~ 576 (709)
..+|..+|.+..|.+ +.+|++-++++..|-.+++||++|+|||||++.|.. |+|.+ -++. ++.|.
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~--f~ve----qE~~g 142 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSG--FHVE----QEVRG 142 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCc--cCch----hheec
Confidence 346899999999985 469999999999999999999999999999999988 33322 2221 11111
Q ss_pred ceEEEcccCcccccCHHHHhccCCC---CCCCHHHHHH-HHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 577 RIGFVGQEPKLFRMDISSNISYGCT---QDIKQQDIEW-AAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 577 ~I~~V~Qd~~LF~gTI~eNI~~g~~---~~~~~e~i~~-aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
--....|+ .+=+++-+.-+..-++ ...+.++|.. ++.-.|..++.+.+|.+ .||||=|=|++||||+
T Consensus 143 ~~t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~--------slSGGWrMrlaLARAl 213 (582)
T KOG0062|consen 143 DDTEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTK--------SLSGGWRMRLALARAL 213 (582)
T ss_pred cchHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcccc--------ccCcchhhHHHHHHHH
Confidence 11111121 1223333332222210 0113455555 66666666776766644 6999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
.++|+||+|||||.+||..+-..+.+.|...+ .|+|+|+|+-+
T Consensus 214 f~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~------~T~liVSHDr~ 256 (582)
T KOG0062|consen 214 FAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK------ITSLIVSHDRN 256 (582)
T ss_pred hcCCCEEeecCCcccchhHHHHHHHHHHhhCC------ceEEEEeccHH
Confidence 99999999999999999999999999998763 79999999854
No 391
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.84 E-value=1.5e-20 Score=189.02 Aligned_cols=163 Identities=20% Similarity=0.175 Sum_probs=109.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE---eCCCCCHHHHhcceEEEcccCcccccCHHH
Q 005203 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF---PIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (709)
Q Consensus 518 L~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~---di~~~~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (709)
++++++++.+| ..+|+||||||||||+..|.-.+.+..+ ....|. ++-..+ .-...|.+++|+.-++.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~--~~~~~i~~~~~~~~~~~----- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDG--ESSAKITVTLKNQGLDA----- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCC--CCeEEEEEEEEcCCccC-----
Confidence 35677777776 7799999999999999988744433221 011122 221112 22456888888876665
Q ss_pred HhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh----ccCCCEEEEeCCCCCCCH
Q 005203 595 NISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI----LRDPTILILDEATSALDA 670 (709)
Q Consensus 595 NI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL----lr~p~ILILDEaTSaLD~ 670 (709)
| + . ...+ .+.+.+++.. ..-.+..+ .+||||||||++||||+ +.+|++++|||||++||.
T Consensus 83 ~-----~-~-~~~~------~~~~~~~l~~-~~~~~~~~--~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~ 146 (198)
T cd03276 83 N-----P-L-CVLS------QDMARSFLTS-NKAAVRDV--KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDM 146 (198)
T ss_pred C-----c-C-CHHH------HHHHHHHhcc-ccccCCcc--cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCH
Confidence 2 1 1 1111 1233344443 22222222 47999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 671 ESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 671 ~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
.+...+.+.|++..++...++|+|+++|+++.+..
T Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~ 181 (198)
T cd03276 147 VNRKISTDLLVKEAKKQPGRQFIFITPQDISGLAS 181 (198)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEECCccccccc
Confidence 99999999998764321123689999999987754
No 392
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.83 E-value=3.4e-20 Score=201.83 Aligned_cols=197 Identities=26% Similarity=0.441 Sum_probs=162.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC-CCCCHHHHhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI-KEVDIKWLRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di-~~~~~~~lR~~ 577 (709)
-++++|++..-.. ....++++||+|.+||+++|.|-+|-|-+.|+..|+|+.+|.+|+|.++|.|+ ...+....|+.
T Consensus 257 vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 257 VLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred EEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 4899999986432 24689999999999999999999999999999999999999999999999997 66777766655
Q ss_pred -eEEEcccC----cccccCHHHHhccCCCCC--------CCHHHHHHHHHHHhhHHHHHcCCCCcccccCC-----CCCC
Q 005203 578 -IGFVGQEP----KLFRMDISSNISYGCTQD--------IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-----DLLS 639 (709)
Q Consensus 578 -I~~V~Qd~----~LF~gTI~eNI~~g~~~~--------~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe-----~~LS 639 (709)
+||||.|- -...-|+.||+.+..-.. .+..++.+.++. -|++ ||-.-.+ .+||
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~-----li~~----fdVr~~~~~~~a~~LS 405 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARE-----LIEE----FDVRAPSPDAPARSLS 405 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHH-----HHHH----cCccCCCCCcchhhcC
Confidence 99999887 367899999998774311 233444444333 3333 3443222 4899
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcCC
Q 005203 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFDC 709 (709)
Q Consensus 640 GGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~~ 709 (709)
||+.||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.+.. |+.+++|+-.|..+.-=+||
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~---G~AVLLiS~dLDEil~lsDr 472 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDA---GKAVLLISEDLDEILELSDR 472 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhc---CCEEEEEehhHHHHHHhhhe
Confidence 99999999999999999999999999999999999999999887754 79999999999988777665
No 393
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=1e-19 Score=217.44 Aligned_cols=72 Identities=33% Similarity=0.493 Sum_probs=63.9
Q ss_pred cCC--CCCChHHHHHHHHHHHhcc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhc
Q 005203 633 VDD--DLLSGGQKQRIAIARAILR---DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSF 707 (709)
Q Consensus 633 vGe--~~LSGGQkQRIaLARALlr---~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~ 707 (709)
++. ..|||||+||++|||||.+ +|+++||||||++||+++...+.+.|+++.+. |.|+|+|+|++..+. .+
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~---G~TVIvi~H~~~~i~-~a 897 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ---GNTVVVIEHNLDVIK-TA 897 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCHHHHH-hC
Confidence 354 5899999999999999997 59999999999999999999999999988643 689999999999875 45
Q ss_pred C
Q 005203 708 D 708 (709)
Q Consensus 708 ~ 708 (709)
|
T Consensus 898 D 898 (924)
T TIGR00630 898 D 898 (924)
T ss_pred C
Confidence 5
No 394
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.82 E-value=5.3e-20 Score=201.13 Aligned_cols=196 Identities=21% Similarity=0.310 Sum_probs=129.4
Q ss_pred CCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhc
Q 005203 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG 576 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~ 576 (709)
...+.++|+|+.|++ .++++|..|++.+|++++|+|++||||||+++.+.|-..|..-++-+-=.+ +++.+..+..
T Consensus 73 s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~~a 148 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEKQA 148 (614)
T ss_pred cccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchHHH
Confidence 346999999999985 479999999999999999999999999999999999998866544332111 1222222211
Q ss_pred ceEEEcccCcccccCH-------HHHhccCCCCCCCHHHHHHH---HHHHhhHHHHH-----cCCCCcccccCC---CCC
Q 005203 577 RIGFVGQEPKLFRMDI-------SSNISYGCTQDIKQQDIEWA---AKQAYAHDFIM-----SLPSGYETLVDD---DLL 638 (709)
Q Consensus 577 ~I~~V~Qd~~LF~gTI-------~eNI~~g~~~~~~~e~i~~a---a~~a~l~d~I~-----~LP~GydT~vGe---~~L 638 (709)
-|....+..+- .|++.-.++ +.+.++...+ +...+.+.+=. --.+|.....-+ .+|
T Consensus 149 -----v~~v~~~~~~e~~rle~~~E~l~~~~d-~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~ 222 (614)
T KOG0927|consen 149 -----VQAVVMETDHERKRLEYLAEDLAQACD-DKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDL 222 (614)
T ss_pred -----HHHHhhhhHHHHHHHHHHHHHHHhhcc-chhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhcc
Confidence 11111122222 233332222 2222222221 11111111100 001233332223 389
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCc-EEEEEecChhhhhhhcC
Q 005203 639 SGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRR-TVLVIAHRLISTALSFD 708 (709)
Q Consensus 639 SGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~-TvIiIAHRlsti~~~~~ 708 (709)
|||||-|++|||||+.+|++|+|||||.|||.++-.-+.+.|.+.. + |+++|+|.-.++-.-|+
T Consensus 223 SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d------~~~lVi~sh~QDfln~vCT 287 (614)
T KOG0927|consen 223 SGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD------RIILVIVSHSQDFLNGVCT 287 (614)
T ss_pred CchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc------CceEEEEecchhhhhhHhh
Confidence 9999999999999999999999999999999999999999998764 4 89999999988866553
No 395
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.80 E-value=3.5e-19 Score=176.11 Aligned_cols=79 Identities=22% Similarity=0.331 Sum_probs=69.7
Q ss_pred HHcCCCCcccccCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEe
Q 005203 622 IMSLPSGYETLVDDDLLSGGQKQRIAIARAIL----RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIA 697 (709)
Q Consensus 622 I~~LP~GydT~vGe~~LSGGQkQRIaLARALl----r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIA 697 (709)
+..+|+|-.|.+ ||||||||++||||+. ++|+++++||||++||+++.+.+.+.++++.+. ++|+|+||
T Consensus 83 ~~~~~~~~~~~~----LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~---g~tiIiiS 155 (178)
T cd03239 83 YFLVLQGKVEQI----LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH---TSQFIVIT 155 (178)
T ss_pred eEEecCCcCccc----CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEE
Confidence 667788888888 9999999999999984 799999999999999999999999999887542 58999999
Q ss_pred cChhhhhhhcC
Q 005203 698 HRLISTALSFD 708 (709)
Q Consensus 698 HRlsti~~~~~ 708 (709)
|+++.+. .+|
T Consensus 156 H~~~~~~-~ad 165 (178)
T cd03239 156 LKKEMFE-NAD 165 (178)
T ss_pred CCHHHHh-hCC
Confidence 9998775 354
No 396
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.80 E-value=2.4e-19 Score=190.03 Aligned_cols=168 Identities=24% Similarity=0.381 Sum_probs=129.3
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC--------CCCCcceEEECCEeCCCCCHHHHhcceEEEcccCc
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL--------YEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPK 586 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl--------~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~ 586 (709)
..+|+|+||+|+||+.++|||+||+||||++++++|. |+|++|.|.+--..++.+-+.+ -||.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge---------~Ep~ 466 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGE---------YEPE 466 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcc---------cccc
Confidence 4689999999999999999999999999999999985 7899999987433333222221 2333
Q ss_pred ccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 005203 587 LFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATS 666 (709)
Q Consensus 587 LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTS 666 (709)
+=.-||.|-+.-- .-|...-.+.+..||+.|-+.- -... +.||-|||-|.-||+++-..|.+++.||.-|
T Consensus 467 f~~~tilehl~s~---tGD~~~AveILnraGlsDAvly-----Rr~f--~ELStGQKeR~KLAkllaerpn~~~iDEF~A 536 (593)
T COG2401 467 FGEVTILEHLRSK---TGDLNAAVEILNRAGLSDAVLY-----RRKF--SELSTGQKERAKLAKLLAERPNVLLIDEFAA 536 (593)
T ss_pred cCchhHHHHHhhc---cCchhHHHHHHHhhccchhhhh-----hccH--hhcCcchHHHHHHHHHHhcCCCcEEhhhhhh
Confidence 3345777765421 1223445667788888775531 1111 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 667 ALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 667 aLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
+||..|..++...|.++..+ -+.|.++||||++.+
T Consensus 537 hLD~~TA~rVArkiselaRe--~giTlivvThrpEv~ 571 (593)
T COG2401 537 HLDELTAVRVARKISELARE--AGITLIVVTHRPEVG 571 (593)
T ss_pred hcCHHHHHHHHHHHHHHHHH--hCCeEEEEecCHHHH
Confidence 99999999999999888743 369999999999865
No 397
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.79 E-value=5.8e-19 Score=189.34 Aligned_cols=172 Identities=26% Similarity=0.399 Sum_probs=125.8
Q ss_pred EEEEEcCCCCCCccceeeeEEecC-----CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 504 DVSFRYSSREMVPVLQHVNISVNP-----GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 504 nVsF~Y~~~~~~~vL~~lsl~I~~-----Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
+--+.|++- ..-+.++.|++++ ||+++++||+|-||||++|+|+|..+|++|+ ..++ .|
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~v 403 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KV 403 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eE
Confidence 334556542 3455666776655 6789999999999999999999999999998 2222 36
Q ss_pred EEEcccCc-ccccCHHHHhccCCCCCCCHHHHH-HHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcc
Q 005203 579 GFVGQEPK-LFRMDISSNISYGCTQDIKQQDIE-WAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 579 ~~V~Qd~~-LF~gTI~eNI~~g~~~~~~~e~i~-~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr 654 (709)
+|=||-.. -|.||+.+=+.-..+...+....+ +.++-.++ +-.+.. ..||||+.||+|||-||.|
T Consensus 404 SyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l-----------~~i~e~~v~~LSGGELQRvaIaa~L~r 472 (591)
T COG1245 404 SYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL-----------EDLLERPVDELSGGELQRVAIAAALSR 472 (591)
T ss_pred eecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccch-----------HHHHhcccccCCchhHHHHHHHHHhcc
Confidence 66677422 289999887654332112222222 23333333 333333 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 655 DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
++++.+||||+++||.+..-.+.++|++...+ .++|.++|-|++-.+.
T Consensus 473 eADlYllDEPSA~LDvEqR~~vakvIRR~~e~--~~kta~vVdHDi~~~d 520 (591)
T COG1245 473 EADLYLLDEPSAYLDVEQRIIVAKVIRRFIEN--NEKTALVVDHDIYMID 520 (591)
T ss_pred ccCEEEecCchhhccHHHHHHHHHHHHHHHhh--cCceEEEEecceehhh
Confidence 99999999999999999999999999887654 4699999999987654
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.76 E-value=1.4e-18 Score=176.67 Aligned_cols=175 Identities=17% Similarity=0.179 Sum_probs=112.0
Q ss_pred eeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHH-h-----cceEEEcccCcccccC-
Q 005203 519 QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL-R-----GRIGFVGQEPKLFRMD- 591 (709)
Q Consensus 519 ~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~l-R-----~~I~~V~Qd~~LF~gT- 591 (709)
+++.++..+| ..+|+||||||||||+..|.-..-..... .+ +.-..+++ + ..|-...+.. .+.
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~---~~---r~~~~~~~i~~g~~~~~v~~~~~~~---~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKL---LG---RAKKVGEFVKRGCDEGTIEIELYGN---PGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccc---cc---cccCHHHHhhCCCCcEEEEEEEEeC---CCcc
Confidence 4445554443 56899999999999999876444211110 00 00011111 1 1111111110 001
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHH----hccCCCEEEEeCCCC
Q 005203 592 ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQRIAIARA----ILRDPTILILDEATS 666 (709)
Q Consensus 592 I~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe-~~LSGGQkQRIaLARA----Llr~p~ILILDEaTS 666 (709)
-.+|+++. .+++++.+++.+... |.+.++|.+.+..--. ..||||||||+.+|++ ++.+|+++++||||+
T Consensus 85 ~~~n~~~~----~~q~~~~~~~~~~~~-e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 85 QVDNLCQF----LPQDRVGEFAKLSPI-ELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred ccCCceEE----EchHHHHHHHhCChH-hHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 34566644 256788888888665 6777777776543112 5899999999887754 468999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcCC
Q 005203 667 ALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFDC 709 (709)
Q Consensus 667 aLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~~ 709 (709)
+||+.+.+.+.+.|.+..+. ..+.|+|+|||++..+...+|+
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~-~g~~~viiith~~~~~~~~~~~ 201 (213)
T cd03277 160 GMDPTNERKVFDMLVETACK-EGTSQYFLITPKLLPGLNYHEK 201 (213)
T ss_pred cCCHHHHHHHHHHHHHHhhc-CCCceEEEEchhhccCCcccCc
Confidence 99999999999999887531 0125899999998776665553
No 399
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.75 E-value=8.6e-18 Score=164.04 Aligned_cols=185 Identities=19% Similarity=0.304 Sum_probs=135.0
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC-CCCCH-----
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI-KEVDI----- 571 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di-~~~~~----- 571 (709)
..|+++|+.|+|+.. .|++-|+|+++|+|..+-+||.+|+|||||+|+|.|-.-...|.|.++|.+- ++-++
T Consensus 12 ~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred ceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 469999999999975 4899999999999999999999999999999999999999999999999863 21111
Q ss_pred -----HHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHH
Q 005203 572 -----KWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQ 644 (709)
Q Consensus 572 -----~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQ 644 (709)
.+|++..+.-..-|.=-.-|..+ +.+|-. ..+.++=.+..+. +|--+-= ..+|-|||.
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~-mifgV~-g~dp~Rre~LI~i-------------LDIdl~WRmHkvSDGqrR 154 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEH-MIFGVG-GDDPERREKLIDI-------------LDIDLRWRMHKVSDGQRR 154 (291)
T ss_pred eeEecccccccccccccccccccccHHH-HHhhcc-CCChhHhhhhhhh-------------eeccceEEEeeccccchh
Confidence 23445444444222111223322 233321 2222222222211 1111111 379999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
|+-|+--|+|.=++|+|||-|--||.-..+.+.+-++.-.+. +|+|++..||=-.
T Consensus 155 RVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~--RgatIVYATHIFD 209 (291)
T KOG2355|consen 155 RVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQ--RGATIVYATHIFD 209 (291)
T ss_pred hhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhh--cCcEEEEEeeecc
Confidence 999999999999999999999999999999999999876543 5799999999543
No 400
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=5.6e-18 Score=179.06 Aligned_cols=67 Identities=24% Similarity=0.344 Sum_probs=59.1
Q ss_pred CCChHHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 637 LLSGGQKQRIAIARAILR----DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 637 ~LSGGQkQRIaLARALlr----~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.|||||+||+++||+++. +|++++|||||++||+++...+.+.++++.+ ++|+|+|||+++.. ..+|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~----~~tii~isH~~~~~-~~~d 240 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR----SHQVLCITHLPQVA-AMAD 240 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC----CCEEEEEechHHHH-HhcC
Confidence 599999999999997653 9999999999999999999999999988754 48999999999865 4555
No 401
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.72 E-value=1.6e-17 Score=167.23 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=91.9
Q ss_pred ceeeeEEecCCc-EEEEEcCCCCcHHHHHHHHh--------cCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCccc
Q 005203 518 LQHVNISVNPGE-VVAIAGLSGSGKSTLVNLLL--------RLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLF 588 (709)
Q Consensus 518 L~~lsl~I~~Ge-~vAIVG~SGsGKSTLlkLLl--------gl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF 588 (709)
+.++|+++++|+ .++|+||||||||||++.+. |++-|....+ .++|..|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~-- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFA-- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEE--
Confidence 457899999996 69999999999999999998 6665542111 1334444311
Q ss_pred ccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 005203 589 RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSAL 668 (709)
Q Consensus 589 ~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaL 668 (709)
.++ . ++. ++ ++ -+.+|+|+||+..|++++ .+|+++++||||+++
T Consensus 78 --------~lg-~----~~~---------l~-------~~------~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~gl 121 (200)
T cd03280 78 --------DIG-D----EQS---------IE-------QS------LSTFSSHMKNIARILQHA-DPDSLVLLDELGSGT 121 (200)
T ss_pred --------ecC-c----hhh---------hh-------cC------cchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCC
Confidence 111 0 000 00 11 146899999999999995 899999999999999
Q ss_pred CHHHHHHHHH-HHHHhhccCCCCcEEEEEecChhh
Q 005203 669 DAESEHNIKG-VLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 669 D~~tE~~I~~-~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
|++....+.. .++.+.+. ++|+|++||..+.
T Consensus 122 D~~~~~~i~~~~l~~l~~~---~~~vi~~tH~~~l 153 (200)
T cd03280 122 DPVEGAALAIAILEELLER---GALVIATTHYGEL 153 (200)
T ss_pred CHHHHHHHHHHHHHHHHhc---CCEEEEECCHHHH
Confidence 9999888854 56666532 5899999998653
No 402
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.71 E-value=7e-18 Score=151.68 Aligned_cols=76 Identities=24% Similarity=0.138 Sum_probs=72.3
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHH
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (709)
..+|+++||++++||.++|+||||||||||++++. +|+|.++|.|+..++.++.++.+++++|+ +|.+||+|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 36899999999999999999999999999999986 79999999999999999999999999998 99999999
Q ss_pred Hhcc
Q 005203 595 NISY 598 (709)
Q Consensus 595 NI~~ 598 (709)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9987
No 403
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.70 E-value=6.2e-17 Score=158.36 Aligned_cols=198 Identities=23% Similarity=0.340 Sum_probs=151.5
Q ss_pred EEEEEEEEcCCC-CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC----CCcceEEECCEeCCCCCHHHHh
Q 005203 501 DFVDVSFRYSSR-EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE----PTNGQILIDGFPIKEVDIKWLR 575 (709)
Q Consensus 501 ~~~nVsF~Y~~~-~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~----p~~G~I~idG~di~~~~~~~lR 575 (709)
.++|++-.+... ....+.+++|++.+.||+-++||+||||||-+.|.++|..+ .+.-...+|++|+-.+++..-|
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 345555444322 13568999999999999999999999999999999999875 4566778899999999988888
Q ss_pred cc----eEEEcccCccc---ccC----HHHHhccCCCC-------CCCHHHHHHHHHHHhhHH--HHHcCCCCcccccCC
Q 005203 576 GR----IGFVGQEPKLF---RMD----ISSNISYGCTQ-------DIKQQDIEWAAKQAYAHD--FIMSLPSGYETLVDD 635 (709)
Q Consensus 576 ~~----I~~V~Qd~~LF---~gT----I~eNI~~g~~~-------~~~~e~i~~aa~~a~l~d--~I~~LP~GydT~vGe 635 (709)
+. |++++|||.-- +.+ +-+||-...-+ .-...+-.+.+..+|+.| +|++ .|-
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~---SYP----- 156 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR---SYP----- 156 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---hCc-----
Confidence 75 56899998632 122 45666433110 113455667778888855 4442 121
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 636 DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 636 ~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
..|-.|+-|++.||-|+..+|++||-||||.++|+.|..+|...|.++..+ .+.|++.|+|++.+|..-+|
T Consensus 157 ~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn--~~TtILL~s~Dl~~is~W~d 227 (330)
T COG4170 157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQN--SNTTILLISHDLQMISQWAD 227 (330)
T ss_pred chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhcc--CCceEEEEcccHHHHHHHhh
Confidence 236788889999999999999999999999999999999999999888653 57899999999999987665
No 404
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.69 E-value=2.7e-17 Score=165.56 Aligned_cols=138 Identities=17% Similarity=0.274 Sum_probs=96.9
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCccc-ccCHH
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLF-RMDIS 593 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF-~gTI~ 593 (709)
..|++|++++. |+.++|+||||||||||+|.|.|... +..+|.++..- .++.|...+| ..|+.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 46888887765 79999999999999999999977442 22366665431 2566766555 66899
Q ss_pred HHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 005203 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673 (709)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE 673 (709)
||+.++.. ...+++. .+.+.++.+. .++|+++++||||+++|+.+.
T Consensus 78 d~l~~~~s--~~~~e~~------~~~~iL~~~~--------------------------~~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 78 DDLRDGIS--YFYAELR------RLKEIVEKAK--------------------------KGEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred hccccccC--hHHHHHH------HHHHHHHhcc--------------------------CCCCeEEEEecccCCCCHHHH
Confidence 99988742 2222222 1223333221 079999999999999999988
Q ss_pred HHHHH-HHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 674 HNIKG-VLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 674 ~~I~~-~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
..+.. .++.+.+. +.|+|++||.++.+..
T Consensus 124 ~~l~~~ll~~l~~~---~~tiiivTH~~~~~~~ 153 (199)
T cd03283 124 QAASAAVLKFLKNK---NTIGIISTHDLELADL 153 (199)
T ss_pred HHHHHHHHHHHHHC---CCEEEEEcCcHHHHHh
Confidence 76654 46666432 5899999999987654
No 405
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.69 E-value=1.7e-16 Score=154.48 Aligned_cols=127 Identities=23% Similarity=0.296 Sum_probs=92.8
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE-EEcccCcccccCHHHHhccCC
Q 005203 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG-FVGQEPKLFRMDISSNISYGC 600 (709)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~-~V~Qd~~LF~gTI~eNI~~g~ 600 (709)
++.+.+|..+.|||||||||||+++.+....-..+|.+.-. .+. +.| .+++...-| .+.
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~----------~~g~~~~~~~~~~--------i~~- 74 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV----------KAGCIVAAVSAEL--------IFT- 74 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc----------cCCCcceeeEEEE--------ehh-
Confidence 44555667999999999999999999776665555555441 010 111 122222111 000
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHH
Q 005203 601 TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR----DPTILILDEATSALDAESEHNI 676 (709)
Q Consensus 601 ~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr----~p~ILILDEaTSaLD~~tE~~I 676 (709)
..+|||||+||++|||+|.+ +|++++||||++++|++....+
T Consensus 75 ----------------------------------~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l 120 (162)
T cd03227 75 ----------------------------------RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQAL 120 (162)
T ss_pred ----------------------------------eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 01299999999999999986 7899999999999999999999
Q ss_pred HHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 677 KGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 677 ~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
.+.+.+..++ ++|+|++||+++....
T Consensus 121 ~~~l~~~~~~---~~~vii~TH~~~~~~~ 146 (162)
T cd03227 121 AEAILEHLVK---GAQVIVITHLPELAEL 146 (162)
T ss_pred HHHHHHHHhc---CCEEEEEcCCHHHHHh
Confidence 9999876532 5799999999997664
No 406
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.69 E-value=5.6e-17 Score=174.26 Aligned_cols=180 Identities=29% Similarity=0.431 Sum_probs=122.6
Q ss_pred EEEEEcCCCCCCccceeeeEE-ecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC-----CCCCHHHHh--
Q 005203 504 DVSFRYSSREMVPVLQHVNIS-VNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI-----KEVDIKWLR-- 575 (709)
Q Consensus 504 nVsF~Y~~~~~~~vL~~lsl~-I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di-----~~~~~~~lR-- 575 (709)
++.-+|..+ -++=..|- .++|+.++|+|++|-||||-+|+|+|-..|+=|+- ++-|- ..+.-.++.
T Consensus 79 e~vHRYg~N----gFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~Y 152 (591)
T COG1245 79 EVVHRYGVN----GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNY 152 (591)
T ss_pred cceeeccCC----ceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHH
Confidence 567788753 13333333 56799999999999999999999999999997753 33110 001000000
Q ss_pred ------------cceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChH
Q 005203 576 ------------GRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGG 641 (709)
Q Consensus 576 ------------~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGG 641 (709)
.++-||--=|..+.|++.|=+.--+. .-..+|.++.| +++-.++- +.||||
T Consensus 153 F~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de-------------~g~~devve~l--~L~nvl~r~v~~LSGG 217 (591)
T COG1245 153 FKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE-------------RGKFDEVVERL--GLENVLDRDVSELSGG 217 (591)
T ss_pred HHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhh-------------cCcHHHHHHHh--cchhhhhhhhhhcCch
Confidence 11223333345566666665543322 11223333333 34444443 589999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhc
Q 005203 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSF 707 (709)
Q Consensus 642 QkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~ 707 (709)
+-||+|||-|+.|+++++++|||||-||....-...+.|+.+.++ +++||+|-|+|+.+.--.
T Consensus 218 ELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~---~k~ViVVEHDLavLD~ls 280 (591)
T COG1245 218 ELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED---GKYVIVVEHDLAVLDYLS 280 (591)
T ss_pred HHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc---CCeEEEEechHHHHHHhh
Confidence 999999999999999999999999999999888888889998764 599999999998765433
No 407
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.66 E-value=1.8e-16 Score=164.39 Aligned_cols=163 Identities=20% Similarity=0.258 Sum_probs=112.4
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEE--ECCEeCCCCCHHHHhcceEEEcccCccccc----CHHHHh
Q 005203 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQIL--IDGFPIKEVDIKWLRGRIGFVGQEPKLFRM----DISSNI 596 (709)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~--idG~di~~~~~~~lR~~I~~V~Qd~~LF~g----TI~eNI 596 (709)
+.|.+||+++|+||+|+|||||++.+.+..+...+++. +-...-+..+..++.+.+. ..++.. +-...+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~-----~~~v~~~~~~~~~~~~ 85 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVK-----GEVIASTFDEPPERHV 85 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhc-----cEEEEecCCCCHHHHH
Confidence 57899999999999999999999999999987644333 2222222356666666651 001111 111111
Q ss_pred ccCCCCCCCHHHHHHHHHH---Hh-----hHHHHHcCCCCcccccCC--CCCChHH--------HHHHHHHHHhccCCCE
Q 005203 597 SYGCTQDIKQQDIEWAAKQ---AY-----AHDFIMSLPSGYETLVDD--DLLSGGQ--------KQRIAIARAILRDPTI 658 (709)
Q Consensus 597 ~~g~~~~~~~e~i~~aa~~---a~-----l~d~I~~LP~GydT~vGe--~~LSGGQ--------kQRIaLARALlr~p~I 658 (709)
... ..+.+.|+. .| +-|.+.++|++|++.+|+ ..+|||| +||+++||+++++++|
T Consensus 86 ~~~-------~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsI 158 (249)
T cd01128 86 QVA-------EMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSL 158 (249)
T ss_pred HHH-------HHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCce
Confidence 100 111122221 11 336789999999999998 4899999 9999999999999999
Q ss_pred EEEeCCCCCCCHHHHHH-HHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 659 LILDEATSALDAESEHN-IKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 659 LILDEaTSaLD~~tE~~-I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
.+| ||+.+|+.+|.. ++ +++++. .++|.|+++||+++..
T Consensus 159 t~l--~T~~~d~~~~~~~~i--~~~~~~---~~~~~ivls~~la~~~ 198 (249)
T cd01128 159 TII--ATALVDTGSRMDDVI--FEEFKG---TGNMELVLDRRLAERR 198 (249)
T ss_pred EEe--eeheecCCCcccchH--HHHHhc---CCCcEEEEchHHhhCC
Confidence 999 999999877765 54 444432 2489999999999864
No 408
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.65 E-value=2.2e-16 Score=188.24 Aligned_cols=182 Identities=24% Similarity=0.367 Sum_probs=144.8
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---cceEEECCEeCCCCCHHHHhcceEEEcccCccc-cc
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT---NGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLF-RM 590 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~---~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF-~g 590 (709)
..+|+|+|.-++||+.+-+.||.|||||||+|.|.|-.+-. .|+|.+||.|.++.-. ++.++|.+|+|.-| .-
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 57999999999999999999999999999999999876532 4699999999998876 88999999999888 67
Q ss_pred CHHHHhccCCC-----CCCC-HHHHHHHHHHHhhHHHHHcCCCCcccccCC---CCCChHHHHHHHHHHHhccCCCEEEE
Q 005203 591 DISSNISYGCT-----QDIK-QQDIEWAAKQAYAHDFIMSLPSGYETLVDD---DLLSGGQKQRIAIARAILRDPTILIL 661 (709)
Q Consensus 591 TI~eNI~~g~~-----~~~~-~e~i~~aa~~a~l~d~I~~LP~GydT~vGe---~~LSGGQkQRIaLARALlr~p~ILIL 661 (709)
|++|-|-|... ...+ -++-+..+....--=.|-.|...+||.||+ +..|||||.|+.+|-++..+|++++.
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 99998876421 0111 122222211111111234567789999998 59999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 662 DEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 662 DEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
||+|-+||..|.-+|.++|+++..- .+.|.++.=|.++
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~--~~~t~~vsi~Q~s 322 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHI--TGATALVSILQPS 322 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhh--hcceEEEEeccCC
Confidence 9999999999999999999987632 3567777766654
No 409
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=7.5e-16 Score=193.66 Aligned_cols=115 Identities=24% Similarity=0.267 Sum_probs=101.4
Q ss_pred ccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC-CCCChHHHH------HHHHHHHhccCCCEE
Q 005203 587 LFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQ------RIAIARAILRDPTIL 659 (709)
Q Consensus 587 LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe-~~LSGGQkQ------RIaLARALlr~p~IL 659 (709)
.|+||++|||.+ .+ +++++ +.+++.+++++|+..||.| ||.++. ..||||||| |++||||++.+|++|
T Consensus 1153 ~~~~~~~~~i~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RS-DADEN--VSASDKRRNYNYRVVMLKG-DTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-CC-CCChH--HHHHHHcCchHHHhccCCC-CeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 699999999999 66 77776 7899999999999999999 999988 699999999 999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhccC--CCCcEEEEEecChhhhhhh
Q 005203 660 ILDEATSALDAESEHNIKGVLRAVRSDT--MTRRTVLVIAHRLISTALS 706 (709)
Q Consensus 660 ILDEaTSaLD~~tE~~I~~~L~~l~~~~--~~~~TvIiIAHRlsti~~~ 706 (709)
+|||||++||+.+...+.+.|..+.... ..|.|+|+|||++..+..-
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~ 1276 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELL 1276 (1311)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHH
Confidence 9999999999999999999887763210 1257999999999877643
No 410
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=2e-15 Score=159.10 Aligned_cols=165 Identities=17% Similarity=0.268 Sum_probs=104.9
Q ss_pred ceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----------------------------------------Cc
Q 005203 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-----------------------------------------TN 556 (709)
Q Consensus 518 L~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-----------------------------------------~~ 556 (709)
+++.++++.+| ..+|+|||||||||++..|.-+... .+
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 34556777776 6889999999999998765432211 11
Q ss_pred ceEEECCEeCCC-CCHHHHhcceEEEcccCcccccCHHHHhccCCC--CCCCHHHHHHHHHHHhhHHHHHcC---CCCcc
Q 005203 557 GQILIDGFPIKE-VDIKWLRGRIGFVGQEPKLFRMDISSNISYGCT--QDIKQQDIEWAAKQAYAHDFIMSL---PSGYE 630 (709)
Q Consensus 557 G~I~idG~di~~-~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~--~~~~~e~i~~aa~~a~l~d~I~~L---P~Gyd 630 (709)
..+.+||..++. -+...+-..|.+.+++..|+.++-.+-..|.|. .....+-.....+.-.+.....++ |..-|
T Consensus 91 ~~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~d~ 170 (270)
T cd03242 91 RKARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNALLKGPHRDD 170 (270)
T ss_pred eEEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCChhh
Confidence 145577777655 223344556777888888987765555554431 011111111111111112222222 44333
Q ss_pred ccc--CC----CCCChHHHHHHHHHHHh---------ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 005203 631 TLV--DD----DLLSGGQKQRIAIARAI---------LRDPTILILDEATSALDAESEHNIKGVLRAV 683 (709)
Q Consensus 631 T~v--Ge----~~LSGGQkQRIaLARAL---------lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l 683 (709)
..+ .+ +-+|+||+|+++|||+| +++|++++|||||++||+.....+.+.+.+.
T Consensus 171 l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~ 238 (270)
T cd03242 171 LLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR 238 (270)
T ss_pred eEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC
Confidence 322 23 25899999999999997 4899999999999999999999999999764
No 411
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.61 E-value=1.8e-15 Score=154.95 Aligned_cols=137 Identities=20% Similarity=0.150 Sum_probs=96.8
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE-EEcccCcccccCHH
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG-FVGQEPKLFRMDIS 593 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~-~V~Qd~~LF~gTI~ 593 (709)
..+.+|+++++++|+.++|+|||||||||+++.+.- ..+..++| +||.+...+. +.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--cc
Confidence 578999999999999999999999999999999881 24455566 6776642211 11
Q ss_pred HHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCC---CCCC
Q 005203 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI--LRDPTILILDEA---TSAL 668 (709)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL--lr~p~ILILDEa---TSaL 668 (709)
|+| ....++.|.+ ..++|+|++|+..+|+++ ..+|++++|||| |+.+
T Consensus 74 ~~i----------------l~~~~l~d~~------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~l 125 (222)
T cd03285 74 DCI----------------LARVGASDSQ------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTY 125 (222)
T ss_pred cee----------------Eeeeccccch------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChH
Confidence 111 1111111111 246999999999999999 999999999999 9999
Q ss_pred CHHHHHHHH-HHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 669 DAESEHNIK-GVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 669 D~~tE~~I~-~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|........ +.+.+ . .++|+|++||. ..+...+|
T Consensus 126 D~~~~~~~il~~l~~-~----~~~~vlisTH~-~el~~~~~ 160 (222)
T cd03285 126 DGFGLAWAIAEYIAT-Q----IKCFCLFATHF-HELTALAD 160 (222)
T ss_pred HHHHHHHHHHHHHHh-c----CCCeEEEEech-HHHHHHhh
Confidence 998765432 44432 1 25899999996 44444443
No 412
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.61 E-value=5.7e-15 Score=184.40 Aligned_cols=177 Identities=25% Similarity=0.273 Sum_probs=125.7
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh------cC---CCCCcceEEECCEeCCCCC----------HHHHhcc
Q 005203 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL------RL---YEPTNGQILIDGFPIKEVD----------IKWLRGR 577 (709)
Q Consensus 517 vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLl------gl---~~p~~G~I~idG~di~~~~----------~~~lR~~ 577 (709)
=|+|++++||-|..++|+|-||||||||++=.+ .+ .+.-+--|.||-.||..-+ .+.+|+.
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999997433 11 1333456889988885533 2445555
Q ss_pred eEEEcc------cCc----------------------------------------------------------ccccCHH
Q 005203 578 IGFVGQ------EPK----------------------------------------------------------LFRMDIS 593 (709)
Q Consensus 578 I~~V~Q------d~~----------------------------------------------------------LF~gTI~ 593 (709)
.|-.|+ .+- +++.||.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 542111 111 2333344
Q ss_pred HHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccC---CCEEEEeCCCCCC
Q 005203 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD---PTILILDEATSAL 668 (709)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~---p~ILILDEaTSaL 668 (709)
|-+.||.. .. +.+..-+.+..+-.||=++ |. ..|||||.|||-||..|.++ +.++||||||.+|
T Consensus 1665 ea~~~F~~----~~------~i~~~L~~L~~vGLgYl~L-Gq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GL 1733 (1809)
T PRK00635 1665 EVAETFPF----LK------KIQKPLQALIDNGLGYLPL-GQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSL 1733 (1809)
T ss_pred HHHHHhhc----cH------HHHHHHHHHHHcCCCeeeC-CCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCC
Confidence 43334311 01 1222223344556677664 66 59999999999999999976 7899999999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 669 DAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 669 D~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+...-+++.+.++++... |.|+|+|.|++..|.. +|
T Consensus 1734 h~~d~~~Ll~~l~~L~~~---g~tvivieH~~~~i~~-aD 1769 (1809)
T PRK00635 1734 DNQQKSALLVQLRTLVSL---GHSVIYIDHDPALLKQ-AD 1769 (1809)
T ss_pred CHHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHh-CC
Confidence 999999999999998743 7999999999998766 55
No 413
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.57 E-value=8.4e-15 Score=167.05 Aligned_cols=71 Identities=32% Similarity=0.482 Sum_probs=63.5
Q ss_pred CC--CCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 634 DD--DLLSGGQKQRIAIARAILRDP---TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 634 Ge--~~LSGGQkQRIaLARALlr~p---~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|. ..||||+.|||=||.-|.|+. -+.||||||-+|-.+.-+++++.|.++-.. |.|||+|-|+|..| +.+|
T Consensus 817 GQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~---GnTViVIEHNLdVI-k~AD 892 (935)
T COG0178 817 GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK---GNTVIVIEHNLDVI-KTAD 892 (935)
T ss_pred CCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEecccceE-eecC
Confidence 55 499999999999999999998 999999999999999999999999998754 79999999999865 4444
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.57 E-value=9.7e-15 Score=147.30 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=85.8
Q ss_pred eeeEEecCCcEEEEEcCCCCcHHHHHHHHhc-CCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhcc
Q 005203 520 HVNISVNPGEVVAIAGLSGSGKSTLVNLLLR-LYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISY 598 (709)
Q Consensus 520 ~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlg-l~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~ 598 (709)
..++++.+|++++|+|||||||||+++.+.+ .+.++.|...- ..+..+++..|.-..|.. .|++.
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~~~--~d~i~- 86 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRIGA--EDSIS- 86 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEecC--ccccc-
Confidence 3456667899999999999999999999994 43333332110 012234443332211110 00000
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 005203 599 GCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKG 678 (709)
Q Consensus 599 g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~ 678 (709)
++ -+.+|++++| +..+-++..+|+++||||||+++|+.....+..
T Consensus 87 ----------------------------~~------~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 87 ----------------------------DG------RSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred ----------------------------CC------ceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 01 1345666665 666678888999999999999999988776654
Q ss_pred H-HHHhhccCCCCcEEEEEecChhhhhh
Q 005203 679 V-LRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 679 ~-L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
. ++.+.+. +.|+|++||+.+.+..
T Consensus 132 ~ll~~l~~~---~~~vi~~tH~~~~~~~ 156 (202)
T cd03243 132 AVLEHLLEK---GCRTLFATHFHELADL 156 (202)
T ss_pred HHHHHHHhc---CCeEEEECChHHHHHH
Confidence 4 4555432 5899999999876553
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.53 E-value=2.9e-14 Score=144.07 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=94.7
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEE-EcccCcccccCHH
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF-VGQEPKLFRMDIS 593 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~-V~Qd~~LF~gTI~ 593 (709)
.++.+|+++++++|+.++|+|||||||||+++.+.++. +..++|+ ||-+. ..-++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 57999999999999999999999999999999998883 2223332 11111 111333
Q ss_pred HHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 005203 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673 (709)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE 673 (709)
|||.. .+..+-+..-+.+.+|+|++|+. .+-++..+|++++||||++++|+...
T Consensus 73 d~I~~-------------------------~~~~~d~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 73 NRLLS-------------------------RLSNDDSMERNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred hheeE-------------------------ecCCccccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCHHHH
Confidence 44321 11111011112257999999764 44557889999999999999999765
Q ss_pred HHHHH-HHHHhhccCCCCcEEEEEecChhhhhhh
Q 005203 674 HNIKG-VLRAVRSDTMTRRTVLVIAHRLISTALS 706 (709)
Q Consensus 674 ~~I~~-~L~~l~~~~~~~~TvIiIAHRlsti~~~ 706 (709)
..+.. .++.+.+. ++++|++||..+.+...
T Consensus 127 ~~l~~~il~~l~~~---~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 127 FAISLAILECLIKK---ESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHHHHHHHHHHHhc---CCEEEEECChHHHHHHh
Confidence 54433 34555432 68999999999877654
No 416
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=3.6e-14 Score=151.35 Aligned_cols=188 Identities=22% Similarity=0.355 Sum_probs=121.5
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh--cCCCCCcceEEECCEeCCCCCHHHH--
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL--RLYEPTNGQILIDGFPIKEVDIKWL-- 574 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLl--gl~~p~~G~I~idG~di~~~~~~~l-- 574 (709)
+|.++|.+.+-.+ ...+.|-||.|-.|..+++|||+|-|||||++-|. .|--|..=.+++-.+.+-.-+...+
T Consensus 264 DIKiEnF~ISA~G---k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 264 DIKIENFDISAQG---KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred cceeeeeeeeccc---ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence 4778887776543 56899999999999999999999999999999887 3444554455554444322111110
Q ss_pred -----hcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHH---HHhh-------HHHHHcCCCCcccccCC---C
Q 005203 575 -----RGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAK---QAYA-------HDFIMSLPSGYETLVDD---D 636 (709)
Q Consensus 575 -----R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~---~a~l-------~d~I~~LP~GydT~vGe---~ 636 (709)
.++.+..-.+.. +..-|--|+. .-.|++.+++. ..|+ ...+. --|++-..-+ .
T Consensus 341 vl~aD~kRl~lLeee~~-----L~~q~e~Gd~--taaErl~~v~~ELraiGA~sAEarARRILA--GLGFskEMQ~rPt~ 411 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAK-----LMSQIEEGDT--TAAERLKEVADELRAIGADSAEARARRILA--GLGFSKEMQERPTT 411 (807)
T ss_pred HHHhhHHHHHHHHHHHH-----HHHHHHcCch--HHHHHHHHHHHHHHHhccccchhHHHHHHh--hcCCChhHhcCCcc
Confidence 011111111111 1111222321 11233333322 1111 11111 1255554444 3
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 637 LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 637 ~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
.+|||=|-|++|||||+-+|-+|.|||||.|||-..--.+.+.|+.++ +|.+||+|+..-+.
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk------KTLLIVSHDQgFLD 473 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK------KTLLIVSHDQGFLD 473 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh------heeEEEecccchHH
Confidence 799999999999999999999999999999999998888888888875 89999999976543
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.46 E-value=2.9e-13 Score=142.11 Aligned_cols=119 Identities=23% Similarity=0.309 Sum_probs=87.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC-HHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHH
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-IKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQ 607 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~-~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e 607 (709)
+.++|+||+|||||||++.|+|++.|++|+|.+||+++..++ ..++...+++++|++.--..++.|| ++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~----~~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG----CP------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc----ch------
Confidence 689999999999999999999999999999999999998775 5688888999999763222334443 11
Q ss_pred HHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccC
Q 005203 608 DIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDT 687 (709)
Q Consensus 608 ~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~ 687 (709)
+..++ ..++|| .+|+++++|||++ +..+...++.+..
T Consensus 182 ------k~~~~---------------------------~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~-- 218 (270)
T TIGR02858 182 ------KAEGM---------------------------MMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHA-- 218 (270)
T ss_pred ------HHHHH---------------------------HHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhC--
Confidence 11121 445555 3899999999984 2334444444432
Q ss_pred CCCcEEEEEecChhh
Q 005203 688 MTRRTVLVIAHRLIS 702 (709)
Q Consensus 688 ~~~~TvIiIAHRlst 702 (709)
|.|+|+++|..+.
T Consensus 219 --G~~vI~ttH~~~~ 231 (270)
T TIGR02858 219 --GVSIIATAHGRDV 231 (270)
T ss_pred --CCEEEEEechhHH
Confidence 5899999998654
No 418
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.42 E-value=2.2e-13 Score=138.43 Aligned_cols=144 Identities=24% Similarity=0.341 Sum_probs=89.3
Q ss_pred EEEEEcCCCCcHHHHH-HHHhcCCCC-----------------CcceEEECCEeCCCCC-HHHHhcceEEEcccC---cc
Q 005203 530 VVAIAGLSGSGKSTLV-NLLLRLYEP-----------------TNGQILIDGFPIKEVD-IKWLRGRIGFVGQEP---KL 587 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLl-kLLlgl~~p-----------------~~G~I~idG~di~~~~-~~~lR~~I~~V~Qd~---~L 587 (709)
+++|+|++|||||||+ +++.|.+++ +.|.|.+++.|...-. ...+| .+++.|.+ ..
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~--~~~~~~~~~~i~v 88 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR--DGYYIKGQCAIIM 88 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHhccCCEEEEE
Confidence 6999999999999999 689998865 5688899888875321 11122 12222221 12
Q ss_pred cccC-----------------HHHHhc---cCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC-CCCChH--HHH
Q 005203 588 FRMD-----------------ISSNIS---YGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGG--QKQ 644 (709)
Q Consensus 588 F~gT-----------------I~eNI~---~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe-~~LSGG--QkQ 644 (709)
|+.| ..+|+. .++..+..+.++. .+.. ++.......| -+ +..||+ |+|
T Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~--~~~~---~~~~~~~~~~----~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 89 FDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVK--ARQI---TFHRKKNLQY----YDISAKSNYNFEKP 159 (215)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCC--HHHH---HHHHHcCCEE----EEEeCCCCCCHHHH
Confidence 3333 123432 2321111111110 1111 1222211111 12 344444 999
Q ss_pred HHHHHHHhccCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHhh
Q 005203 645 RIAIARAILRDPTILILDEAT-----SALDAESEHNIKGVLRAVR 684 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaT-----SaLD~~tE~~I~~~L~~l~ 684 (709)
++.|||+++.+|+++++|||| ++||+.+.+.+.+.++++.
T Consensus 160 f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 160 FLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 999999999999999999999 9999999999999998874
No 419
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.42 E-value=3.3e-13 Score=137.64 Aligned_cols=66 Identities=26% Similarity=0.427 Sum_probs=51.8
Q ss_pred CCChHHHHHHHHH----HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhh
Q 005203 637 LLSGGQKQRIAIA----RAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALS 706 (709)
Q Consensus 637 ~LSGGQkQRIaLA----RALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~ 706 (709)
.||||||-+++|| .+-++++|++||||+.++||..+...+.+.|+++.++ +-+|++||+..+...+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~----~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ----SQFIITTHNPEMFEDA 205 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT----SEEEEE-S-HHHHTT-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccccccc
Confidence 7999999999987 4446789999999999999999999999999988653 7899999999876654
No 420
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.41 E-value=6.4e-13 Score=159.56 Aligned_cols=84 Identities=27% Similarity=0.426 Sum_probs=69.4
Q ss_pred HHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEE
Q 005203 620 DFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDP--TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLV 695 (709)
Q Consensus 620 d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIi 695 (709)
+++..+-.+|-+ ++. ..|||||+||++|||||..+| +++||||||++||+++.+.+.+.|+++.+. |.|+|+
T Consensus 469 ~~L~~vgL~~l~-l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~---G~TVIv 544 (924)
T TIGR00630 469 GFLIDVGLDYLT-LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDL---GNTVIV 544 (924)
T ss_pred HhHhhccccccc-cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhC---CCEEEE
Confidence 344444334322 343 589999999999999999986 899999999999999999999999998653 689999
Q ss_pred EecChhhhhhhcC
Q 005203 696 IAHRLISTALSFD 708 (709)
Q Consensus 696 IAHRlsti~~~~~ 708 (709)
|+|+++.+. .+|
T Consensus 545 VeHd~~~i~-~aD 556 (924)
T TIGR00630 545 VEHDEETIR-AAD 556 (924)
T ss_pred EECCHHHHh-hCC
Confidence 999999886 566
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.41 E-value=1.6e-12 Score=142.62 Aligned_cols=62 Identities=24% Similarity=0.349 Sum_probs=54.1
Q ss_pred CCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 637 LLSGGQKQRIAIARAIL---------RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 637 ~LSGGQkQRIaLARALl---------r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
.+|+||+|+++||++|. ++|+||+||||+|+||++....+.+.+.++ +.++++.+|.+..+.
T Consensus 273 ~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~------~~qv~it~~~~~~~~ 343 (361)
T PRK00064 273 FGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL------GAQVFITTTDLEDLA 343 (361)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc------CCEEEEEcCChhhhh
Confidence 59999999999999884 899999999999999999999999988654 258889999876543
No 422
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.40 E-value=8.3e-13 Score=158.87 Aligned_cols=69 Identities=28% Similarity=0.399 Sum_probs=63.2
Q ss_pred CCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 636 DLLSGGQKQRIAIARAILRDP--TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 636 ~~LSGGQkQRIaLARALlr~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
..|||||||||+|||||..+| +++||||||++||++....+.+.|+++++. |.|+|+|+|+++.+. .+|
T Consensus 488 ~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~---G~TVIvVeH~~~~i~-~aD 558 (943)
T PRK00349 488 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDL---GNTLIVVEHDEDTIR-AAD 558 (943)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCHHHHH-hCC
Confidence 489999999999999999997 999999999999999999999999998643 689999999999875 465
No 423
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.38 E-value=1.2e-12 Score=133.51 Aligned_cols=129 Identities=22% Similarity=0.265 Sum_probs=82.8
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHH
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (709)
..+.+|+++++++ +.++|+|||||||||+++.+.+..-. |+ .|.++ + ..+..++++.|- ...-+..|
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v---p--~~~~~i~~~~~i--~~~~~~~~ 84 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV---P--ASKAEIGVVDRI--FTRIGASD 84 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee---c--cccceecceeeE--eccCCchh
Confidence 4688999999988 99999999999999999999874421 11 11111 1 113456666541 11223344
Q ss_pred HhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHH----HHHHHHh--ccCCCEEEEeCC---C
Q 005203 595 NISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQR----IAIARAI--LRDPTILILDEA---T 665 (709)
Q Consensus 595 NI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQR----IaLARAL--lr~p~ILILDEa---T 665 (709)
|+ |+||.++ ..+++++ ..+|++++|||| |
T Consensus 85 ~l------------------------------------------s~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 85 DL------------------------------------------AGGRSTFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hh------------------------------------------ccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 44 4444332 2355544 358999999999 9
Q ss_pred CCCCHHH-HHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 666 SALDAES-EHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 666 SaLD~~t-E~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
+++|... ...+.+.+.+. .++|+|++||..+..
T Consensus 123 ~~lD~~~~~~~il~~l~~~-----~~~~vi~~TH~~~l~ 156 (216)
T cd03284 123 STYDGLSIAWAIVEYLHEK-----IGAKTLFATHYHELT 156 (216)
T ss_pred ChHHHHHHHHHHHHHHHhc-----cCCcEEEEeCcHHHH
Confidence 9999865 24455555332 148999999997543
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.36 E-value=9.8e-12 Score=147.81 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=100.6
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCC-cEEEEEcCCCCcHHHHHHHHhcC-CCCCcceEEECCEeCCCCCHHHHhc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPG-EVVAIAGLSGSGKSTLVNLLLRL-YEPTNGQILIDGFPIKEVDIKWLRG 576 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~G-e~vAIVG~SGsGKSTLlkLLlgl-~~p~~G~I~idG~di~~~~~~~lR~ 576 (709)
.+.++|+..-+-.. .-.-.+|+++.+| +.++|+||||+||||++|.+.|. +.++.|.
T Consensus 295 ~i~l~~~rhPll~~---~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~------------------ 353 (771)
T TIGR01069 295 KIILENARHPLLKE---PKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI------------------ 353 (771)
T ss_pred CEEEccccCceecC---CceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC------------------
Confidence 57777765422211 0112378888887 89999999999999999999987 4555541
Q ss_pred ceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCC
Q 005203 577 RIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (709)
Q Consensus 577 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p 656 (709)
+||.+... .-.+.+++.. +.+++ +.+. ++ -+.+|+|++|+..+++++ .+|
T Consensus 354 ---~Vpa~~~~-~~~~~d~i~~----~i~~~------------~si~---~~------LStfS~~m~~~~~il~~~-~~~ 403 (771)
T TIGR01069 354 ---PIPANEHS-EIPYFEEIFA----DIGDE------------QSIE---QN------LSTFSGHMKNISAILSKT-TEN 403 (771)
T ss_pred ---CccCCccc-cccchhheee----ecChH------------hHHh---hh------hhHHHHHHHHHHHHHHhc-CCC
Confidence 23332210 0011222211 11110 0010 11 145899999999999987 789
Q ss_pred CEEEEeCCCCCCCHHHHHHHH-HHHHHhhccCCCCcEEEEEecChhhhhhh
Q 005203 657 TILILDEATSALDAESEHNIK-GVLRAVRSDTMTRRTVLVIAHRLISTALS 706 (709)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~-~~L~~l~~~~~~~~TvIiIAHRlsti~~~ 706 (709)
++++||||++++|+..-..+. ..++.+.+ .++++|++||..+.-..+
T Consensus 404 sLvLlDE~g~GtD~~eg~ala~aiLe~l~~---~g~~viitTH~~eL~~~~ 451 (771)
T TIGR01069 404 SLVLFDELGAGTDPDEGSALAISILEYLLK---QNAQVLITTHYKELKALM 451 (771)
T ss_pred cEEEecCCCCCCCHHHHHHHHHHHHHHHHh---cCCEEEEECChHHHHHHh
Confidence 999999999999999988884 45565543 258999999998765443
No 425
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.32 E-value=1.1e-11 Score=126.22 Aligned_cols=139 Identities=17% Similarity=0.167 Sum_probs=91.7
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh--cCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccc--cC
Q 005203 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL--RLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR--MD 591 (709)
Q Consensus 516 ~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLl--gl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~--gT 591 (709)
.|-+|++++=..+.+++|+||+|+||||++|.+. +.. ++.|...... ...+++..|.-.-+. +|
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 4556666542223799999999999999999998 333 6667665421 134667777532221 11
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 005203 592 ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAE 671 (709)
Q Consensus 592 I~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~ 671 (709)
+.+++ ..| --+-||+++|+++..+|++++||||++++|+.
T Consensus 85 i~~~~----------------------S~f------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 85 VSSGQ----------------------SAF------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred hhhcc----------------------chH------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 11111 011 33559999999999999999999999999987
Q ss_pred HHHHH-HHHHHHhhccCCCCcEEEEEecChhhhhhh
Q 005203 672 SEHNI-KGVLRAVRSDTMTRRTVLVIAHRLISTALS 706 (709)
Q Consensus 672 tE~~I-~~~L~~l~~~~~~~~TvIiIAHRlsti~~~ 706 (709)
....+ .+.++++.+....+.++|++||.++.+...
T Consensus 125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 64444 456666643100125899999999877654
No 426
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.30 E-value=9.7e-12 Score=133.24 Aligned_cols=169 Identities=22% Similarity=0.403 Sum_probs=119.1
Q ss_pred EEEcCCCCCCccceeeeEEecCCc-----EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEE
Q 005203 506 SFRYSSREMVPVLQHVNISVNPGE-----VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (709)
Q Consensus 506 sF~Y~~~~~~~vL~~lsl~I~~Ge-----~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~ 580 (709)
.|.||+ ...-+-+..|.|+.|| .+...|++|.||||+++.|+|..+|++|. ++..++ ++|
T Consensus 342 ~y~Yp~--m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~ln-------VSy 406 (592)
T KOG0063|consen 342 RYSYPK--MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVLN-------VSY 406 (592)
T ss_pred eeccCc--ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------cccccc-------eec
Confidence 377885 3678899999999996 67889999999999999999999998761 222333 445
Q ss_pred EcccCc-ccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCC
Q 005203 581 VGQEPK-LFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPT 657 (709)
Q Consensus 581 V~Qd~~-LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ 657 (709)
=||... =|.||+|.=+ .++++.+-..-+...++++ |...+-.++. .+||||+.||+|||-+|=+.++
T Consensus 407 kpqkispK~~~tvR~ll---------~~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKpAd 476 (592)
T KOG0063|consen 407 KPQKISPKREGTVRQLL---------HTKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKPAD 476 (592)
T ss_pred cccccCccccchHHHHH---------HHHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCc
Confidence 555432 4677777632 2333333333333333333 3344444444 4899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 658 ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
+.+.|||.+-||.+.....-..+++.--. .++|-.+|-|..-
T Consensus 477 vYliDEpsAylDSeQRi~AskvikRfilh--akktafvVEhdfI 518 (592)
T KOG0063|consen 477 VYLIDEPSAYLDSEQRIIASKVIKRFILH--AKKTAFVVEHDFI 518 (592)
T ss_pred eEEecCchhhcChHHHHHHHHHHHHHHHh--ccchhhhhhhHHH
Confidence 99999999999998766555555542211 2489999999864
No 427
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.30 E-value=3.1e-13 Score=158.42 Aligned_cols=197 Identities=13% Similarity=0.099 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHH-----HHHHHHHHH
Q 005203 322 PLGLCTLMICSALAGLMLIYGL-YQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRY-----KHWLGKLAD 395 (709)
Q Consensus 322 ~Lalv~l~~~~l~~~i~~~~~~-~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~-----~~~~~~~~~ 395 (709)
.|++++++++++++++.....+ ..+........ .+..++.+.|++.++.+||..+.++....+| .....++.+
T Consensus 5 ~L~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~ 83 (644)
T PRK10733 5 LILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFL-QEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLT 83 (644)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHH-HHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHH
Confidence 3445555544444433222222 12223333333 4667889999999999999999988433333 222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 396 INLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAE---QLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASE 472 (709)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G---~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~ 472 (709)
.+.+..+.......+...+.....++++++|+++++.|+++.| ++++|..+...+..+ ..+...+.++.....+.+
T Consensus 84 ~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~ 162 (644)
T PRK10733 84 KNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKE 162 (644)
T ss_pred cCCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHH
Confidence 3333332223333444445556678889999999999999999 888998888887766 556667777776677888
Q ss_pred HHHHHHhcCCCCccccccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 473 KVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 473 Rl~~il~~~~e~~~~~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
|+.++++...+.. . + +++..++++| +.|+||+||||||+++.+++-.
T Consensus 163 ~l~~i~~~~~~~~------~---------~----------------~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~ 209 (644)
T PRK10733 163 EVAELVEYLREPS------R---------F----------------QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 209 (644)
T ss_pred HHHHHHHHhhCHH------H---------H----------------HhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHc
Confidence 8888877533211 0 0 0111245666 9999999999999999998865
Q ss_pred C
Q 005203 553 E 553 (709)
Q Consensus 553 ~ 553 (709)
.
T Consensus 210 ~ 210 (644)
T PRK10733 210 K 210 (644)
T ss_pred C
Confidence 3
No 428
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.28 E-value=7e-12 Score=128.21 Aligned_cols=137 Identities=15% Similarity=0.135 Sum_probs=85.3
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhc-CCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHH
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR-LYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDIS 593 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlg-l~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~ 593 (709)
..+.+|+++++++|++++|+||||+||||+++.+.+ .+.++.|...... . .....+.+-..-+.- ++++.
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~---~~~~~~~~i~~~~~~-----~d~~~ 88 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S---ATLSIFDSVLTRMGA-----SDSIQ 88 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c---eEEeccceEEEEecC-----ccccc
Confidence 578999999999999999999999999999999999 7888999866432 1 111112122222211 12334
Q ss_pred HHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 005203 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673 (709)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE 673 (709)
+|.+.| ..|+.+..+. ++ -..+|+++||||+.++.|+...
T Consensus 89 ~~~StF------~~e~~~~~~i------l~----------------------------~~~~~sLvllDE~~~gT~~~d~ 128 (222)
T cd03287 89 HGMSTF------MVELSETSHI------LS----------------------------NCTSRSLVILDELGRGTSTHDG 128 (222)
T ss_pred cccchH------HHHHHHHHHH------HH----------------------------hCCCCeEEEEccCCCCCChhhH
Confidence 444433 1222222221 11 1236999999998555554333
Q ss_pred H----HHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 674 H----NIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 674 ~----~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
. .+.+.+.+. .++|+|++||.++....
T Consensus 129 ~~i~~~il~~l~~~-----~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 129 IAIAYATLHYLLEE-----KKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHHHHHhc-----cCCeEEEEcccHHHHHH
Confidence 3 344444332 24899999999886543
No 429
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.22 E-value=2.1e-11 Score=121.35 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=47.4
Q ss_pred CCCChHHHHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhccCCCCcEEEEEecChhhh
Q 005203 636 DLLSGGQKQRIAIARAILR--DPTILILDEATSALDAESEHNIKG-VLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 636 ~~LSGGQkQRIaLARALlr--~p~ILILDEaTSaLD~~tE~~I~~-~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
+.+|+|++| +++++.. +|+++++||||+++|+.....+.. .++.+.+. .++++|++||.++..
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~--~~~~iii~TH~~~l~ 125 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEK--IGALTLFATHYHELT 125 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc--CCCeEEEEecHHHHH
Confidence 468888887 5555555 999999999999999997777644 44555431 158999999999643
No 430
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=2.9e-10 Score=124.82 Aligned_cols=61 Identities=28% Similarity=0.376 Sum_probs=55.1
Q ss_pred CCChHHHHHHHHHHHhcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 637 LLSGGQKQRIAIARAILR---------DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 637 ~LSGGQkQRIaLARALlr---------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
.+|.||+++++||.+|.. +|+||+||||+|+||+...+.+.+.|.+. |.++++.+|.+..+
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~------~~qv~it~~~~~~~ 344 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL------GVQVFVTAISLDHL 344 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc------CCEEEEEecChhhc
Confidence 499999999999999999 99999999999999999999999999653 36999999998654
No 431
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.17 E-value=2.2e-11 Score=141.35 Aligned_cols=91 Identities=29% Similarity=0.407 Sum_probs=72.8
Q ss_pred HHHHHHHHhhHHHHHcCCCCcccccCC--------CCCChHHHHHHHHHHHhc----------cCCCEEEEeCCC-CCCC
Q 005203 609 IEWAAKQAYAHDFIMSLPSGYETLVDD--------DLLSGGQKQRIAIARAIL----------RDPTILILDEAT-SALD 669 (709)
Q Consensus 609 i~~aa~~a~l~d~I~~LP~GydT~vGe--------~~LSGGQkQRIaLARALl----------r~p~ILILDEaT-SaLD 669 (709)
+.+.++..+. ++...+|+++++.+++ ..||||||||++|||||+ .+|++||||||| ++||
T Consensus 433 ~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld 511 (562)
T PHA02562 433 INHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALD 511 (562)
T ss_pred HHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccc
Confidence 4444444442 4444678888888743 379999999999999987 599999999998 7899
Q ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 670 AESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 670 ~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
+++...+.+.|.++ + +.|+|+|||+++....
T Consensus 512 ~~~~~~~~~~l~~~-~----~~~iiiish~~~~~~~ 542 (562)
T PHA02562 512 AEGTKALLSILDSL-K----DTNVFVISHKDHDPQK 542 (562)
T ss_pred hhHHHHHHHHHHhC-C----CCeEEEEECchhchhh
Confidence 99999999999887 3 4899999999876543
No 432
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.16 E-value=3e-10 Score=123.84 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhcCCCCccccccccccCCCCcEEEEEEEEEcCCCCCCccce-----------eeeEEecCCcEEEEEcC
Q 005203 468 VGASEKVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQ-----------HVNISVNPGEVVAIAGL 536 (709)
Q Consensus 468 ~~~~~Rl~~il~~~~e~~~~~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~-----------~lsl~I~~Ge~vAIVG~ 536 (709)
..+.+|++++++.++... ..+....+.++|+||+|.||+. +++|+ |+++.|.+||+++||||
T Consensus 104 ~~~~ER~~~Ll~v~~vn~-----~~~e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~ 176 (415)
T TIGR00767 104 PKEGERYFALLKVESVNG-----DDPEKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAP 176 (415)
T ss_pred cccHhHHHHHhCCCccCC-----CCccccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEEEECC
Confidence 346899999999876532 1222345689999999999963 57897 99999999999999999
Q ss_pred CCCcHHHHHHHHhcCCCCC
Q 005203 537 SGSGKSTLVNLLLRLYEPT 555 (709)
Q Consensus 537 SGsGKSTLlkLLlgl~~p~ 555 (709)
+|||||||++.|.+.+...
T Consensus 177 ~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 177 PKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCChhHHHHHHHHhhccc
Confidence 9999999999999988654
No 433
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.14 E-value=4.5e-10 Score=125.35 Aligned_cols=158 Identities=21% Similarity=0.256 Sum_probs=118.3
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE---eCCC-----CCHHHHhcceEEEcccCc
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF---PIKE-----VDIKWLRGRIGFVGQEPK 586 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~---di~~-----~~~~~lR~~I~~V~Qd~~ 586 (709)
..+++++ ++|++||+++|+|+||+|||||+++|+|+++|+.|.|.+.|+ ++.+ ++...+++.|.+|.+-+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~- 223 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD- 223 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC-
Confidence 5689999 999999999999999999999999999999999999999554 4443 45566888899887632
Q ss_pred ccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCC-hHHHHH-HHHHHHhccCCCEEEEeCC
Q 005203 587 LFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLS-GGQKQR-IAIARAILRDPTILILDEA 664 (709)
Q Consensus 587 LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LS-GGQkQR-IaLARALlr~p~ILILDEa 664 (709)
+..-+++..+--...+.|+... +|+|.++==.+++ =-|.|| |++ +..+|| +
T Consensus 224 ----------------~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~A~A~rEisl---~~ge~P------~ 276 (438)
T PRK07721 224 ----------------QPALMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRVAMAQREIGL---AVGEPP------T 276 (438)
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHHHHHHHHHHH---hcCCCC------c
Confidence 2335666666666667788875 5888877533332 223333 222 235666 8
Q ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCc-----EEEEEecChhh
Q 005203 665 TSALDAESEHNIKGVLRAVRSDTMTRR-----TVLVIAHRLIS 702 (709)
Q Consensus 665 TSaLD~~tE~~I~~~L~~l~~~~~~~~-----TvIiIAHRlst 702 (709)
|+++|+..-..+.+.++++.+. ..|. |+++.+|+++.
T Consensus 277 ~~G~dp~~~~~l~~ller~~~~-~~GsIT~~~TVlv~~hdm~e 318 (438)
T PRK07721 277 TKGYTPSVFAILPKLLERTGTN-ASGSITAFYTVLVDGDDMNE 318 (438)
T ss_pred cccCCHHHHHHHHHHHHHhcCC-CCCCeeeEEEEEEECCCCCc
Confidence 9999999999999999887631 1354 99999999873
No 434
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.13 E-value=2.9e-11 Score=133.68 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=57.3
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-eEEECCEeCCCCCHHHHhcceEEEcccC
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG-QILIDGFPIKEVDIKWLRGRIGFVGQEP 585 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G-~I~idG~di~~~~~~~lR~~I~~V~Qd~ 585 (709)
.++|++||++|++||.++|+||||||||||++ .|+.+|++| +|.+||.++...+..+++..= .|.|+.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 36899999999999999999999999999999 788888888 799999999876654433222 788864
No 435
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.13 E-value=1.2e-10 Score=125.02 Aligned_cols=162 Identities=23% Similarity=0.336 Sum_probs=110.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC----CCHHHH------------hc--ceEEEcccCcc
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE----VDIKWL------------RG--RIGFVGQEPKL 587 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~----~~~~~l------------R~--~I~~V~Qd~~L 587 (709)
.||+..++||.+|-||||-+|.|+|-.+|.-|.-- ++-+-.+ ..-.++ +. ..-||.|=|..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 57999999999999999999999999999877421 1111111 000011 00 01134444444
Q ss_pred cccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 005203 588 FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQRIAIARAILRDPTILILDEATS 666 (709)
Q Consensus 588 F~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe-~~LSGGQkQRIaLARALlr~p~ILILDEaTS 666 (709)
-.|++.+++.--++ .-+.+++.+..++-++++ -| ..||||+-||.+||-|-.+++++.++|||.|
T Consensus 177 ~k~~v~~~l~~~~~-r~~~~~~~~~~~L~~~~~-------------re~~~lsggelqrfaia~~~vq~advyMFDEpSs 242 (592)
T KOG0063|consen 177 VKGTVGSLLDRKDE-RDNKEEVCDQLDLNNLLD-------------REVEQLSGGELQRFAIAMVCVQKADVYMFDEPSS 242 (592)
T ss_pred HHHHHHHHHHHHhh-cccHHHHHHHHHHhhHHH-------------hhhhhcccchhhhhhhhhhhhhhcceeEecCCcc
Confidence 45555555543322 123333333333333222 23 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 667 ALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 667 aLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
-||.+...+-..+|+.+.. +++-+|+|-|+++....
T Consensus 243 YLDVKQRLkaA~~IRsl~~---p~~YiIVVEHDLsVLDy 278 (592)
T KOG0063|consen 243 YLDVKQRLKAAITIRSLIN---PDRYIIVVEHDLSVLDY 278 (592)
T ss_pred cchHHHhhhHHHHHHHhhC---CCCeEEEEEeechHHHh
Confidence 9999988888888888763 47899999999997654
No 436
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.09 E-value=9.2e-10 Score=131.45 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=57.5
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 636 DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGV-LRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 636 ~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~-L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+.+|+|++|+..|+|++ .+|++++||||++++|+.....+..+ ++.+.+ .++++|++||..+.....+|
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~---~~~~vIitTH~~el~~~~~~ 458 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK---RGAKIIATTHYKELKALMYN 458 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH---CCCEEEEECChHHHHHHHhc
Confidence 46899999999999999 89999999999999999988887654 455543 25899999999887766554
No 437
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.07 E-value=1.5e-09 Score=111.91 Aligned_cols=147 Identities=16% Similarity=0.254 Sum_probs=87.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHH-HHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTL-VNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTL-lkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
.|.+++++..+++ .+++|+.+.|+|++||||||+ .+++.++.++.+..+++.... +.+++.++
T Consensus 7 ~~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----~~~~~~~~ 70 (230)
T PRK08533 7 ELSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----TTTEFIKQ 70 (230)
T ss_pred EEEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----CHHHHHHH
Confidence 3667777776653 289999999999999999999 699999887654444443211 12222211
Q ss_pred eEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccC-CCCCChHHHHHHHHHHHhcc--
Q 005203 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVD-DDLLSGGQKQRIAIARAILR-- 654 (709)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vG-e~~LSGGQkQRIaLARALlr-- 654 (709)
.. .+|- +. + +++.. ..+. .+. ...+|+++.++-.++|.+-.
T Consensus 71 ~~-----------------~~g~--~~--~------------~~~~~--~~l~-~~~~~~~~~~~~~~~~~l~~il~~~~ 114 (230)
T PRK08533 71 MM-----------------SLGY--DI--N------------KKLIS--GKLL-YIPVYPLLSGNSEKRKFLKKLMNTRR 114 (230)
T ss_pred HH-----------------HhCC--ch--H------------HHhhc--CcEE-EEEecccccChHHHHHHHHHHHHHHH
Confidence 10 1110 00 0 11110 0000 000 02367776666555554443
Q ss_pred --CCCEEEEeCCCCCC----CHHHHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 655 --DPTILILDEATSAL----DAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 655 --~p~ILILDEaTSaL----D~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
+|+++++||||+.+ |+...+.+.+.++.+++. ++|+++ +|...
T Consensus 115 ~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~---g~tvi~-t~~~~ 163 (230)
T PRK08533 115 FYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSL---NKVIIL-TANPK 163 (230)
T ss_pred hcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhC---CCEEEE-Eeccc
Confidence 69999999999999 777677788888877542 566655 55544
No 438
>PRK11098 microcin B17 transporter; Reviewed
Probab=99.04 E-value=2.5e-06 Score=94.36 Aligned_cols=250 Identities=12% Similarity=0.104 Sum_probs=150.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHH
Q 005203 216 EIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVI 295 (709)
Q Consensus 216 d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l 295 (709)
|...+.........++++......+.. ++..++..+||..+-++++.. |++.++...-=.|++.|++...+..
T Consensus 133 d~~~F~~~l~~f~~i~~~~v~l~v~~~----~~~~~l~irWR~wLT~~yl~~---Wl~~r~ienPDQRIqEDi~~F~~~t 205 (409)
T PRK11098 133 TIGQFYSEVGVFLGIALIAVVISVLNN----FFVSHYVFRWRTAMNEYYMAH---WQKLRHIEGAAQRVQEDTMRFASTL 205 (409)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHhcCCCCCccHhHHHHHHHHHHHH
Confidence 433343333333333333333444444 455666778888777777661 1122222234578999988877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 296 GNDLNLILRNVLQGTGALIYLIVLSWPL-------------GLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEV 362 (709)
Q Consensus 296 ~~~l~~~~~~~l~~i~~li~m~~~s~~L-------------alv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~ 362 (709)
......++..+++.+..+.+++.+|..+ .+++++-..+-.++..+.+++..+...+.++..|.....
T Consensus 206 l~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~ 285 (409)
T PRK11098 206 ENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKE 285 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHH
Confidence 6666777777888888888888888753 223332222222333445555555544444434444332
Q ss_pred HHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHH
Q 005203 363 AQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTK 442 (709)
Q Consensus 363 ~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~a 442 (709)
+.-.=++. |+.|..+.++..++..+...+.-..+..++........+..++-+.+.+.....|++|.|.++.
T Consensus 286 LVrvrena--------E~~E~~~L~~~F~~V~~N~~rl~~~~~~l~~f~~~y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q 357 (409)
T PRK11098 286 LVYGEDDA--------DRATPPTVRELFSNVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQ 357 (409)
T ss_pred HhHhhhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence 22111111 1223344444444444443333333334444444445555666666778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005203 443 FILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDL 480 (709)
Q Consensus 443 f~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~ 480 (709)
.....+++...+..+++.+.++.+.....+|+.+..+.
T Consensus 358 ~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 358 ITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAA 395 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988764
No 439
>PRK14079 recF recombination protein F; Provisional
Probab=99.02 E-value=2.4e-09 Score=117.06 Aligned_cols=59 Identities=15% Similarity=0.286 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 637 LLSGGQKQRIAIARAIL---------RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 637 ~LSGGQkQRIaLARALl---------r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
-+|+||++++++|++|. .+|++++||||||.||.+....+.+.|.... .+.|.-++.+.
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~------q~~it~t~~~~ 330 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP------QAIVAGTEAPP 330 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC------cEEEEcCCCCC
Confidence 48999999999999998 8999999999999999999999988885431 35555454443
No 440
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.01 E-value=5.3e-10 Score=129.72 Aligned_cols=67 Identities=28% Similarity=0.407 Sum_probs=60.3
Q ss_pred CCChHHHHHHHHHHHhccC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 637 LLSGGQKQRIAIARAILRD----PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 637 ~LSGGQkQRIaLARALlr~----p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.+||||+||++||||++.. |++|||||||++||..+...+.+.|+++.+ ++|+|+|||++..+. .+|
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~----~~~vi~iTH~~~~~~-~ad 510 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE----RHQVLCVTHLPQVAA-HAD 510 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEEChHHHHH-hcC
Confidence 4899999999999999975 699999999999999999999999998864 489999999998775 454
No 441
>PRK10869 recombination and repair protein; Provisional
Probab=99.01 E-value=5.8e-10 Score=128.68 Aligned_cols=64 Identities=23% Similarity=0.409 Sum_probs=58.6
Q ss_pred CCChHHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 637 LLSGGQKQRIAIARAILR----DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 637 ~LSGGQkQRIaLARALlr----~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
.+||||+||++|||++.. +|+++||||||++||..+...+.+.|+++.+ +.|+|+|||.+..++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~----~~qvi~iTH~~~~~~ 497 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE----STQVMCVTHLPQVAG 497 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHH
Confidence 489999999999999996 5899999999999999999999999999864 489999999998654
No 442
>PRK12369 putative transporter; Reviewed
Probab=98.99 E-value=7.7e-06 Score=88.51 Aligned_cols=225 Identities=14% Similarity=0.058 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhccCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005203 246 GIANMILVKRMRETLYSALLLQDISFFDSET-VGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLG 324 (709)
Q Consensus 246 ~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~-~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~La 324 (709)
.++..++..+||..+-+|+++.=+. .++ .-.-=.|+..|++...+........++..+++.+..+.+++.+|..++
T Consensus 84 ~~~~~~l~i~WR~wLT~~~l~~wl~---~~~~iDNPDQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~ 160 (326)
T PRK12369 84 DYFASHYAFRWREAMTFSYLKFWRN---KRDNIEGSSQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVS 160 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 3445556677777777777763222 111 111126999999888777767777778888888888888888775443
Q ss_pred H------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHH
Q 005203 325 L------------CTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGK 392 (709)
Q Consensus 325 l------------v~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~ 392 (709)
. ++++...+-.++..+.++...+...+.++..|...-.+ +++-+.-..+ .| .++.++..+.
T Consensus 161 ~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~L---vrvre~ae~~-~E---~~~l~~~f~~ 233 (326)
T PRK12369 161 LPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKEL---VYAEDDKKNY-AK---PETLIELFTG 233 (326)
T ss_pred eeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHH---Hhhccchhhh-hh---HHHHHHHHHH
Confidence 2 22222222222233445444444333333233333222 1110000001 11 1344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 393 LADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASE 472 (709)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~ 472 (709)
..+...+.-.....++........+..++-+.+.+.....|+++.|.++......+++...+..+.+.+.++.+.....+
T Consensus 234 v~~n~~~~~~~~~~l~~~~~~y~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~ 313 (326)
T PRK12369 234 LRFNYFRLFLHYGYFNIWLISFSQMMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYK 313 (326)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43332333223333344444444455566666678888899999999999988889999999999999999999999999
Q ss_pred HHHHHHhc
Q 005203 473 KVFQLMDL 480 (709)
Q Consensus 473 Rl~~il~~ 480 (709)
|+.++.+.
T Consensus 314 RL~~f~~~ 321 (326)
T PRK12369 314 RLKEFEKN 321 (326)
T ss_pred HHHHHHHH
Confidence 99988653
No 443
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.95 E-value=5.9e-06 Score=87.86 Aligned_cols=215 Identities=15% Similarity=0.104 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---Cchhh
Q 005203 196 LSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQ---DISFF 272 (709)
Q Consensus 196 ~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~l---p~~~f 272 (709)
.+.+.+..+.+.........|...+........++++..+.+.....| +...+..+||+.+-+++.+. +..||
T Consensus 41 ~lsv~~~~~~g~~~~aL~~~d~~~f~~~l~~~~~l~~~~~~l~~~~~y----l~~~L~l~wR~~Lt~~~~~~yl~~~~yY 116 (281)
T PF06472_consen 41 YLSVRINFWNGDFYNALQQKDLQAFWRLLLLFLLLAIASALLNSILKY----LRQRLALRWREWLTRHLHDRYLSNRTYY 116 (281)
T ss_pred HHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCchhH
Confidence 333333333333333333344444444444444444444445555454 44555666666666665543 22455
Q ss_pred ccCC----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 005203 273 DSET----VGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLM-ICSALAGLMLIYGLYQKK 347 (709)
Q Consensus 273 e~~~----~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~-~~~l~~~i~~~~~~~~~~ 347 (709)
.-.. .-..=.|+++|++...+...+.+..++..++..+...+.++..+..++..++. ...+-.++..+.++...+
T Consensus 117 ~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~ 196 (281)
T PF06472_consen 117 RLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGPPLGR 196 (281)
T ss_pred hhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 5332 23455799999999888877777777777877888888888888877773333 334444446677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 348 AAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLCFNML 414 (709)
Q Consensus 348 ~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 414 (709)
...+.++..+..........++.++|-.++.|+.|.++..+..+...+...+..+....++.+....
T Consensus 197 l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~ 263 (281)
T PF06472_consen 197 LNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLGFFTNFY 263 (281)
T ss_pred HHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666678888888889999999999999999999999988887776555544444444444333
No 444
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.94 E-value=3.8e-09 Score=100.95 Aligned_cols=129 Identities=18% Similarity=0.147 Sum_probs=79.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHH
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDI 609 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i 609 (709)
.++|.||||+||||+++.+++...+..|.|.+-+.+... ...+.+. .....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~~~~~~------------------~~~~~-------- 51 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EELTERL------------------IGESL-------- 51 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HHHHHHH------------------hhhhh--------
Confidence 378999999999999999999988877777665443221 1111110 00000
Q ss_pred HHHHHHHhhHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH----------HHHHHH
Q 005203 610 EWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQRIAIARAILRDPTILILDEATSALDAES----------EHNIKG 678 (709)
Q Consensus 610 ~~aa~~a~l~d~I~~LP~GydT~vGe-~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~t----------E~~I~~ 678 (709)
...+.+..-.... ..-+.++.++++.+++...+|+++|+||+++-+|... .+.+.+
T Consensus 52 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (165)
T cd01120 52 -------------KGALDNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRE 118 (165)
T ss_pred -------------ccccccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 0001111111111 2335566668899999999999999999996655543 344544
Q ss_pred HHHHhhccCCCCcEEEEEecChhhh
Q 005203 679 VLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 679 ~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
.+...++ .+.|+|+++|.....
T Consensus 119 l~~~~~~---~~~~vv~~~~~~~~~ 140 (165)
T cd01120 119 LLERARK---GGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHhc---CCceEEEEEecCCcc
Confidence 4444433 269999999988654
No 445
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.92 E-value=3.8e-09 Score=107.82 Aligned_cols=140 Identities=18% Similarity=0.213 Sum_probs=85.8
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CcceEEECCEeCCCCCHHHHhcceEEEcccCcccc-cCH
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-TNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR-MDI 592 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~-gTI 592 (709)
..|-+|+++++++|++++|+||+|+||||+++.+.+..-. +-|.- +|-+. ..++++ +.+|. -.-
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~----vpa~~-------~~i~~~---~~i~~~~~~ 82 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD----VPAKS-------MRLSLV---DRIFTRIGA 82 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc----cCccc-------cEeccc---cEEEEecCc
Confidence 5789999999999999999999999999999987754221 11210 01100 112222 12222 123
Q ss_pred HHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 005203 593 SSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAES 672 (709)
Q Consensus 593 ~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~t 672 (709)
.||+..+.. .. ..|+.+.. +.+.. ..+|++++|||+.+++|+..
T Consensus 83 ~d~~~~~~S-tF-~~e~~~~~------~il~~----------------------------~~~~sLvLlDE~~~Gt~~~d 126 (218)
T cd03286 83 RDDIMKGES-TF-MVELSETA------NILRH----------------------------ATPDSLVILDELGRGTSTHD 126 (218)
T ss_pred ccccccCcc-hH-HHHHHHHH------HHHHh----------------------------CCCCeEEEEecccCCCCchH
Confidence 334433311 11 12222221 11111 13689999999999999998
Q ss_pred HHHHHHH-HHHhhccCCCCcEEEEEecChhhhhhh
Q 005203 673 EHNIKGV-LRAVRSDTMTRRTVLVIAHRLISTALS 706 (709)
Q Consensus 673 E~~I~~~-L~~l~~~~~~~~TvIiIAHRlsti~~~ 706 (709)
...+..+ ++.+.+. .++++|++||..+.....
T Consensus 127 g~~la~ail~~L~~~--~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 127 GYAIAHAVLEYLVKK--VKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred HHHHHHHHHHHHHHh--cCCcEEEEeccHHHHHHh
Confidence 8888777 5666531 258999999998876554
No 446
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.91 E-value=4.5e-09 Score=116.83 Aligned_cols=127 Identities=18% Similarity=0.154 Sum_probs=95.8
Q ss_pred CCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEEC---CEeCCCCCHHH
Q 005203 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILID---GFPIKEVDIKW 573 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~id---G~di~~~~~~~ 573 (709)
++.++.++++..|... ..+++.++ +|.+||+++|+||||||||||++.|.|+.+|+.|.|.+. |.++.++..+.
T Consensus 137 p~~~~r~~v~~~l~TG--i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~ 213 (450)
T PRK06002 137 PPAMTRARVETGLRTG--VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDT 213 (450)
T ss_pred CCCeEeecceEEcCCC--cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHH
Confidence 4568999999999743 67999996 999999999999999999999999999999999999885 56766554433
Q ss_pred ----HhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCC-hHHHHH
Q 005203 574 ----LRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLS-GGQKQR 645 (709)
Q Consensus 574 ----lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LS-GGQkQR 645 (709)
.++.|++|+|.+ +...+++..+--...+.|+... +|+|.++=-.+|+ --|.||
T Consensus 214 l~~~r~rtI~vV~qsd-----------------~~~~~r~~~~~~a~~iAEyfrd--~G~~Vll~~DslTr~A~A~r 271 (450)
T PRK06002 214 LADNLKKAVAVVATSD-----------------ESPMMRRLAPLTATAIAEYFRD--RGENVLLIVDSVTRFAHAAR 271 (450)
T ss_pred HHHhhCCeEEEEEcCC-----------------CCHHHHHHHHHHHHHHHHHHHH--cCCCEEEeccchHHHHHHHH
Confidence 235799999965 2335666666556667788775 4888876433332 234444
No 447
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.91 E-value=2.6e-09 Score=118.55 Aligned_cols=151 Identities=16% Similarity=0.169 Sum_probs=106.7
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
+.++-++++-.|... ..+++++ +++.+||+++|+|+||+|||||++.|+|..+|+.|.|.+.|+.-++
T Consensus 129 ~~~~r~~i~~~l~TG--iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~e--------- 196 (432)
T PRK06793 129 HAFEREEITDVFETG--IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGRE--------- 196 (432)
T ss_pred CchheechhhccCCC--CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCccc---------
Confidence 346777787777642 5688885 9999999999999999999999999999999999888776655422
Q ss_pred eEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCccccc-CCCCCChHHHHHHHHHHHhc---
Q 005203 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLV-DDDLLSGGQKQRIAIARAIL--- 653 (709)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~v-Ge~~LSGGQkQRIaLARALl--- 653 (709)
++|.+. +.++..++ .+-+.+ ...+-|.|+|+|.+.+.+..
T Consensus 197 --------------v~e~~~-------------~~l~~~gl---------~~tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 197 --------------VKDFIR-------------KELGEEGM---------RKSVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred --------------HHHHHH-------------HHhhhccc---------ceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 222221 01111010 011122 23578999999999998887
Q ss_pred ----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 654 ----RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 654 ----r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
.++-+|++||+|...|+. +.|-..+.+... .|.|..+-+|-.+
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~---~G~~~~~~s~l~~ 287 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI---GGKTLLMESYMKK 287 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC---CCeeeeeeccchh
Confidence 789999999999999997 444445554432 2678877788433
No 448
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.89 E-value=8.4e-10 Score=111.23 Aligned_cols=78 Identities=29% Similarity=0.386 Sum_probs=65.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCC------------CCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHH
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYE------------PTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDIS 593 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~------------p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~ 593 (709)
++|+.++|+||||||||||+++|++.++ |..|+ +||.|+..++.+.+++. +.|+.+++.+++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence 6899999999999999999999999986 88899 69999999999988885 4688889999999
Q ss_pred HHhccCCCCCCCHHHHHHHH
Q 005203 594 SNISYGCTQDIKQQDIEWAA 613 (709)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa 613 (709)
+| .|+.+ .+.+.+++
T Consensus 78 ~~-~y~~~----~~~i~~~l 92 (205)
T PRK00300 78 GN-YYGTP----RSPVEEAL 92 (205)
T ss_pred Cc-cccCc----HHHHHHHH
Confidence 98 46632 45555544
No 449
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.89 E-value=8.9e-09 Score=110.78 Aligned_cols=119 Identities=17% Similarity=0.251 Sum_probs=79.3
Q ss_pred eeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCC
Q 005203 521 VNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGC 600 (709)
Q Consensus 521 lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~ 600 (709)
+++.+++|+.++|+||+|||||||++.|+++++|..|.|.++ |..++.... +..+.++.|... + +.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~~-------~----~~ 202 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKGG-------Q----GL 202 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCCC-------C----Cc
Confidence 457788999999999999999999999999999999998885 444444332 333333322100 0 00
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 005203 601 TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVL 680 (709)
Q Consensus 601 ~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L 680 (709)
. ..+.+ =+++++|-.+|+++++||+.+ . .+.+.+
T Consensus 203 ~-~~~~~--------------------------------------~~l~~~Lr~~pd~ii~gE~r~---~----e~~~~l 236 (308)
T TIGR02788 203 A-KVTPK--------------------------------------DLLQSCLRMRPDRIILGELRG---D----EAFDFI 236 (308)
T ss_pred C-ccCHH--------------------------------------HHHHHHhcCCCCeEEEeccCC---H----HHHHHH
Confidence 1 12222 134556777999999999996 2 234455
Q ss_pred HHhhccCCCCcEEEEEecChhh
Q 005203 681 RAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 681 ~~l~~~~~~~~TvIiIAHRlst 702 (709)
+.+..+ ..+++...|-.+.
T Consensus 237 ~a~~~g---~~~~i~T~Ha~~~ 255 (308)
T TIGR02788 237 RAVNTG---HPGSITTLHAGSP 255 (308)
T ss_pred HHHhcC---CCeEEEEEeCCCH
Confidence 555432 2466899998874
No 450
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.87 E-value=3.5e-09 Score=107.35 Aligned_cols=64 Identities=20% Similarity=0.380 Sum_probs=52.7
Q ss_pred CCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 637 LLSGGQKQRIAIARAILRDP---TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 637 ~LSGGQkQRIaLARALlr~p---~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
.+|.|+||.+.|+-+|+..+ .++++|||-++|+++..+.+.+.|+...+. +.-+|+.||.|..+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~---~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKK---NIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGG---SSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCcc---CCEEEEeCccchhc
Confidence 57999999999998888776 999999999999999999999999877641 47899999999764
No 451
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.86 E-value=5.3e-08 Score=89.46 Aligned_cols=117 Identities=40% Similarity=0.476 Sum_probs=83.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-ceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTN-GQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIK 605 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~-G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~ 605 (709)
+|..+.|+||+|+||||+++.+++.+.... +.+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478999999999999999999999988765 5677766554443333222
Q ss_pred HHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH----
Q 005203 606 QQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGV---- 679 (709)
Q Consensus 606 ~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~---- 679 (709)
.....+ ....+++.++..+++|-..+|.++++||+.+..+..........
T Consensus 51 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 ------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred ------------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 111111 35789999999999999999999999999999999887766531
Q ss_pred -HHHhhccCCCCcEEEEEecC
Q 005203 680 -LRAVRSDTMTRRTVLVIAHR 699 (709)
Q Consensus 680 -L~~l~~~~~~~~TvIiIAHR 699 (709)
...... ..+..+|..+|.
T Consensus 107 ~~~~~~~--~~~~~~i~~~~~ 125 (148)
T smart00382 107 LLLLLKS--EKNLTVILTTND 125 (148)
T ss_pred HHHHHHh--cCCCEEEEEeCC
Confidence 111111 124677777773
No 452
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.85 E-value=9.5e-09 Score=101.59 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=50.6
Q ss_pred CCCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhhccCCCCcEEEEEecChhh
Q 005203 636 DLLSGGQKQ------RIAIARAILRDPTILILDEATSALD---AESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 636 ~~LSGGQkQ------RIaLARALlr~p~ILILDEaTSaLD---~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
..+|+||+| ....+.+.-.+|+++++||+|+.+| ......+.+.++.+++. |.|+|+++|....
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~---g~tvi~v~~~~~~ 142 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRF---GVTTLLTSEQSGL 142 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHC---CCEEEEEeccccC
Confidence 368999999 4444444557899999999999999 77777777777777643 6899999998764
No 453
>PRK13695 putative NTPase; Provisional
Probab=98.82 E-value=5.1e-09 Score=103.08 Aligned_cols=58 Identities=19% Similarity=0.278 Sum_probs=45.0
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 637 LLSGGQKQRIAIARAILRDPTILILDE--ATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 637 ~LSGGQkQRIaLARALlr~p~ILILDE--aTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
.+||+++-+..+++...++|+++++|| |+.++|....+.+.+.++ .++++|+++|+-.
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~-------~~~~~i~v~h~~~ 137 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLD-------SEKPVIATLHRRS 137 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHh-------CCCeEEEEECchh
Confidence 699999999999999999999999999 544555554444444442 1589999999853
No 454
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.81 E-value=2.6e-08 Score=120.21 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=45.0
Q ss_pred hccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 652 ILRDPTILILDEATSAL-DAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 652 Llr~p~ILILDEaTSaL-D~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
+..+|+++++|||++.| |+...+.+.+.+++.++. +.++|++||.++.+..
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~---~~~vil~Tq~~~d~~~ 700 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKA---NCAVVLATQSISDAER 700 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHc---CCEEEEEeCCHHHHhc
Confidence 46899999999999999 689999999999988754 6899999999998763
No 455
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.81 E-value=1.6e-08 Score=101.95 Aligned_cols=109 Identities=24% Similarity=0.353 Sum_probs=69.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-cceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHH
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYEPT-NGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQD 608 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~p~-~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~ 608 (709)
.+.|+||+||||||+++.|++.+.+. .|.|..-+.|+. +... ...+++.|... +
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~~v------------g--------- 57 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQREV------------G--------- 57 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---Cccceeeeccc------------C---------
Confidence 58999999999999999999888754 677776655542 2111 11122333110 1
Q ss_pred HHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCC
Q 005203 609 IEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTM 688 (709)
Q Consensus 609 i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~ 688 (709)
.+. ..++. ++++||..+|+++++||+. |.++-.. +++....
T Consensus 58 --------------------~~~----~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~---~l~~a~~--- 98 (198)
T cd01131 58 --------------------LDT----LSFEN------ALKAALRQDPDVILVGEMR---DLETIRL---ALTAAET--- 98 (198)
T ss_pred --------------------CCc----cCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHH---HHHHHHc---
Confidence 000 00111 4889999999999999996 5554333 3433322
Q ss_pred CCcEEEEEecChhhh
Q 005203 689 TRRTVLVIAHRLIST 703 (709)
Q Consensus 689 ~~~TvIiIAHRlsti 703 (709)
|.+++.++|..+..
T Consensus 99 -G~~v~~t~Ha~~~~ 112 (198)
T cd01131 99 -GHLVMSTLHTNSAA 112 (198)
T ss_pred -CCEEEEEecCCcHH
Confidence 58999999998754
No 456
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.80 E-value=8.4e-09 Score=127.96 Aligned_cols=70 Identities=24% Similarity=0.275 Sum_probs=62.9
Q ss_pred CCCChHHHHHHHHHHHhcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 636 DLLSGGQKQRIAIARAILR----------DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 636 ~~LSGGQkQRIaLARALlr----------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
.+||||+++|++||+||.. +|++|||||||++||+++...+.+.|+.+.+. |+||+||||.++....
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~---g~~i~iisH~~~~~~~ 1025 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREG---SKMIGIISHVPEFRER 1025 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEeCcHHHHHh
Confidence 3899999999999999985 79999999999999999999999999988643 6899999999987766
Q ss_pred hcC
Q 005203 706 SFD 708 (709)
Q Consensus 706 ~~~ 708 (709)
.+|
T Consensus 1026 ~~~ 1028 (1042)
T TIGR00618 1026 IPH 1028 (1042)
T ss_pred hCC
Confidence 554
No 457
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.79 E-value=1.8e-05 Score=80.42 Aligned_cols=168 Identities=12% Similarity=0.156 Sum_probs=117.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 176 LVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANMILVKR 255 (709)
Q Consensus 176 ~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~~l~~~ 255 (709)
..+.+++.+...+.+.++-.++.+..|.+.+..|+....++.. ....+..+.++..+....|...-.+...++-.+
T Consensus 4 I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~~----~~~~~~~~~l~~~~igaaRR~~DTRvf~rIy~~ 79 (237)
T PF13748_consen 4 IARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDVW----QALMYAALVLLMWAIGAARRIYDTRVFSRIYAE 79 (237)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHH
Confidence 4578889999999999999999999999999998655444321 112223333334445556655554444444444
Q ss_pred HHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 005203 256 MRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMICSALA 335 (709)
Q Consensus 256 lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~~~l~~ 335 (709)
+-..++.+-- -++.+.+.+..|++ -..++-+++...++.++.+++..+++.++++.+++++++.+++...+..
T Consensus 80 la~~vi~~qr------~~~~~~S~i~ARv~-lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l~~~~ 152 (237)
T PF13748_consen 80 LAVPVILSQR------QQGLSVSTIAARVA-LSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLILALFL 152 (237)
T ss_pred HhHHHHHHHH------HhCCChhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443332222 34457899999995 5588999999999999999999999999999999999999998877777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005203 336 GLMLIYGLYQKKAAKLVQE 354 (709)
Q Consensus 336 ~i~~~~~~~~~~~~~~~~~ 354 (709)
++...|.++..+...+.+.
T Consensus 153 ~i~~~f~~~~~~L~~~LNn 171 (237)
T PF13748_consen 153 LILPRFARRNYRLYRRLNN 171 (237)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 7666666555555444433
No 458
>PRK01156 chromosome segregation protein; Provisional
Probab=98.78 E-value=1.1e-08 Score=125.23 Aligned_cols=72 Identities=32% Similarity=0.477 Sum_probs=58.6
Q ss_pred CCCChHHHHHHHH------HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCC-cEEEEEecChhhhhhhcC
Q 005203 636 DLLSGGQKQRIAI------ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTR-RTVLVIAHRLISTALSFD 708 (709)
Q Consensus 636 ~~LSGGQkQRIaL------ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~-~TvIiIAHRlsti~~~~~ 708 (709)
..|||||+||++| ||+++++|++++|||||++||+.+...+.+.+....... .+ .|+|+|||++..+ ..||
T Consensus 800 ~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~-~~~~~ii~ish~~~~~-~~~d 877 (895)
T PRK01156 800 DSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDS-SDIPQVIMISHHRELL-SVAD 877 (895)
T ss_pred ccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEECchHHH-HhcC
Confidence 4899999999975 599999999999999999999999999988886432210 12 4899999999865 4566
Q ss_pred C
Q 005203 709 C 709 (709)
Q Consensus 709 ~ 709 (709)
+
T Consensus 878 ~ 878 (895)
T PRK01156 878 V 878 (895)
T ss_pred e
Confidence 3
No 459
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.76 E-value=9.3e-09 Score=128.92 Aligned_cols=67 Identities=28% Similarity=0.412 Sum_probs=59.9
Q ss_pred CCChHHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 637 LLSGGQKQRIAIARAI----LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 637 ~LSGGQkQRIaLARAL----lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.||||||||++||||+ +++|+++||||||++||+.+...+.+.|..+.+ +.|+|+|||+++.+. .||
T Consensus 1089 ~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~----~~~~i~~sh~~~~~~-~~d 1159 (1179)
T TIGR02168 1089 LLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK----NTQFIVITHNKGTME-VAD 1159 (1179)
T ss_pred ccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc----CCEEEEEEcChhHHH-Hhh
Confidence 7999999999999998 578899999999999999999999999988754 378999999999764 355
No 460
>PRK03918 chromosome segregation protein; Provisional
Probab=98.74 E-value=1.7e-08 Score=123.35 Aligned_cols=68 Identities=26% Similarity=0.409 Sum_probs=58.1
Q ss_pred CCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 637 LLSGGQKQ------RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 637 ~LSGGQkQ------RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.|||||+| |+||||++.++|+++||||||++||+.....+.+.|..+... +.|+|+|||+++.. ..||
T Consensus 788 ~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~---~~~iiiith~~~~~-~~~d 861 (880)
T PRK03918 788 FLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRK---IPQVIIVSHDEELK-DAAD 861 (880)
T ss_pred hCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhc---CCEEEEEECCHHHH-HhCC
Confidence 79999999 666777899999999999999999999999999999876532 46999999999754 3455
No 461
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.72 E-value=1.8e-08 Score=124.59 Aligned_cols=64 Identities=30% Similarity=0.346 Sum_probs=58.2
Q ss_pred CCCChHHHHHHHHHHHhcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhh
Q 005203 636 DLLSGGQKQRIAIARAILR--------DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 636 ~~LSGGQkQRIaLARALlr--------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
..|||||+|+++|||||.. +|++|||||||++||+++-..+.+.|..+.+. |+||+||||-...
T Consensus 948 ~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~---g~~v~iisH~~~l 1019 (1047)
T PRK10246 948 RTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNAS---GKTIGVISHVEAM 1019 (1047)
T ss_pred ccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC---CCEEEEEecHHHH
Confidence 4899999999999999995 89999999999999999999999999998753 7999999995543
No 462
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.72 E-value=6.7e-08 Score=99.73 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=45.5
Q ss_pred CCChHHHHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHH---HHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 637 LLSGGQKQRIAIARAILR--DPTILILDEATSALDAESE---HNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 637 ~LSGGQkQRIaLARALlr--~p~ILILDEaTSaLD~~tE---~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
..|.++++.+..++..++ +|+++++||+|+.+|.... ..+.+.++.+.+ .++|+++++|...
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~---~g~tvllt~~~~~ 166 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD---LGKTILITLHPYA 166 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCc
Confidence 457889999999999998 8999999999965554333 344334544443 2689999999764
No 463
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.65 E-value=7.8e-07 Score=107.96 Aligned_cols=56 Identities=32% Similarity=0.408 Sum_probs=49.8
Q ss_pred HHHHhccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhh
Q 005203 648 IARAILRDPTILILDEATSAL-DAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALS 706 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaL-D~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~ 706 (709)
|+|++..+|+++++|||++.| |+...+.+.+.++.+++. |.+++++||+++.+..+
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~---g~~vil~TQs~~d~~~s 736 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKA---NCLVLMATQSLSDAANS 736 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHhhC
Confidence 789999999999999999999 789999999999888753 68999999999987654
No 464
>PRK01889 GTPase RsgA; Reviewed
Probab=98.65 E-value=1.5e-08 Score=111.05 Aligned_cols=133 Identities=23% Similarity=0.212 Sum_probs=93.1
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHh
Q 005203 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNI 596 (709)
Q Consensus 517 vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI 596 (709)
-++.+.-.+++|++++|+|+||+|||||++.|+|...|..|+|.++|..-.. ...++++.+++|+..+|+.+-..|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 3566777789999999999999999999999999999999999998754332 2346789999999999999888888
Q ss_pred ccCCCCC---CCHHHHHHHHHHHhhHHHHHcCCCC--cccccCCCCCChHHHHHHHHHHHhccC
Q 005203 597 SYGCTQD---IKQQDIEWAAKQAYAHDFIMSLPSG--YETLVDDDLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 597 ~~g~~~~---~~~e~i~~aa~~a~l~d~I~~LP~G--ydT~vGe~~LSGGQkQRIaLARALlr~ 655 (709)
.+.++.. ....++.+.++.+..++....-..| ...-+.+..|| ++|..--+.|+++
T Consensus 261 ~l~~~~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~~~~~i~---~~r~~~Y~~l~~e 321 (356)
T PRK01889 261 QLWDAEDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAIENGELD---ERRLQSYRKLQRE 321 (356)
T ss_pred cccCchhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHHHcCCCC---HHHHHHHHHHHHH
Confidence 8874311 0113444444444433322211111 11111123675 8999999999877
No 465
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.62 E-value=4.4e-08 Score=110.28 Aligned_cols=148 Identities=16% Similarity=0.207 Sum_probs=85.0
Q ss_pred eeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCC
Q 005203 521 VNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGC 600 (709)
Q Consensus 521 lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~ 600 (709)
.+..+++|+++++|||+|+||||++..|++.+.+..|. ++|++|.+|+ |.-+..||+.++.
T Consensus 249 ~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQLr~~A 309 (484)
T PRK06995 249 EDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQLRIYG 309 (484)
T ss_pred ccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHHHHHH
Confidence 34446679999999999999999999999998877774 2678999987 6667788887532
Q ss_pred C-CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHH-HHHHHHHHhccCC-----CEEEEeCCCCCCCHHHH
Q 005203 601 T-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQK-QRIAIARAILRDP-----TILILDEATSALDAESE 673 (709)
Q Consensus 601 ~-~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQk-QRIaLARALlr~p-----~ILILDEaTSaLD~~tE 673 (709)
. -+.+.....+ .......+..+.+....+|.....| |+ ..+.-+.+++.++ .+|+||..|..-
T Consensus 310 eilGVpv~~~~~---~~Dl~~aL~~L~d~d~VLIDTaGr~--~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~----- 379 (484)
T PRK06995 310 KILGVPVHAVKD---AADLRLALSELRNKHIVLIDTIGMS--QRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGD----- 379 (484)
T ss_pred HHhCCCeeccCC---chhHHHHHHhccCCCeEEeCCCCcC--hhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHH-----
Confidence 1 0111000000 0011112234433333344332222 21 1233333444444 789999988762
Q ss_pred HHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 674 HNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 674 ~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
.+.+.++.... .+.+-+|+|+=-+
T Consensus 380 -~l~~i~~~f~~---~~~~g~IlTKlDe 403 (484)
T PRK06995 380 -TLNEVVQAYRG---PGLAGCILTKLDE 403 (484)
T ss_pred -HHHHHHHHhcc---CCCCEEEEeCCCC
Confidence 34444444332 2477888887443
No 466
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.57 E-value=2.7e-07 Score=106.62 Aligned_cols=133 Identities=23% Similarity=0.337 Sum_probs=92.8
Q ss_pred CCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHH-HHHHHHHHhh---HHHHHcCCCC
Q 005203 553 EPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQD-IEWAAKQAYA---HDFIMSLPSG 628 (709)
Q Consensus 553 ~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~-i~~aa~~a~l---~d~I~~LP~G 628 (709)
.|++=.|.|+|.+|.++. ..||+|=..|++.-..++.+ ....--...+ -+|+...--|
T Consensus 410 ~~eal~v~i~g~~i~e~~------------------~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~ 471 (935)
T COG0178 410 KPEALAVKIAGKNIAEIS------------------EMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLG 471 (935)
T ss_pred ChhhheeEECCccHHHHh------------------hccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcC
Confidence 455557889997776543 33455555555321112222 1111111112 2455666668
Q ss_pred cccccCC-CCCChHHHHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 629 YETLVDD-DLLSGGQKQRIAIARAILRD--PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 629 ydT~vGe-~~LSGGQkQRIaLARALlr~--p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
|=|+=-+ .+||||+.|||-||+-+-.+ -=+.|||||+.+|-+..-.+++++|++++. .|.|+|+|-|+.+||..
T Consensus 472 YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRD---lGNTviVVEHDedti~~ 548 (935)
T COG0178 472 YLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD---LGNTVIVVEHDEDTIRA 548 (935)
T ss_pred cccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHh---cCCeEEEEecCHHHHhh
Confidence 8887666 59999999999999999987 567899999999999888889999999875 37999999999999865
Q ss_pred h
Q 005203 706 S 706 (709)
Q Consensus 706 ~ 706 (709)
+
T Consensus 549 A 549 (935)
T COG0178 549 A 549 (935)
T ss_pred c
Confidence 4
No 467
>PRK08149 ATP synthase SpaL; Validated
Probab=98.56 E-value=1.3e-07 Score=104.96 Aligned_cols=101 Identities=17% Similarity=0.185 Sum_probs=80.0
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc---ceEEECCEeCCCCCHHHHh----cceEEEcccCcc
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN---GQILIDGFPIKEVDIKWLR----GRIGFVGQEPKL 587 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~---G~I~idG~di~~~~~~~lR----~~I~~V~Qd~~L 587 (709)
..+++++ +++.+||+++|+|+||+|||||++.|+|+.+++. |.|-.+|.+++++..+.++ +++++|....
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s-- 215 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS-- 215 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC--
Confidence 4689999 9999999999999999999999999999999988 9999999999887766654 5666665532
Q ss_pred cccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccC
Q 005203 588 FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVD 634 (709)
Q Consensus 588 F~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vG 634 (709)
+ +...+++..+--...+.|+... +|+|.++=
T Consensus 216 -------------d-~p~~~r~~a~~~a~tiAE~fr~--~G~~Vll~ 246 (428)
T PRK08149 216 -------------D-FSSVDRCNAALVATTVAEYFRD--QGKRVVLF 246 (428)
T ss_pred -------------C-CCHHHHHhHHHHHHHHHHHHHH--cCCCEEEE
Confidence 1 3345666666566667777775 48888663
No 468
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.55 E-value=7.1e-08 Score=96.15 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=61.2
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcc--c-ccCH
Q 005203 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKL--F-RMDI 592 (709)
Q Consensus 516 ~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~L--F-~gTI 592 (709)
...+-+.+.+++|+.++|+||+||||||+++.|+|+++|++|.|.+.+.+-...+ .+..++++.|++.. + .-|.
T Consensus 13 ~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~ 89 (186)
T cd01130 13 LQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTM 89 (186)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCH
Confidence 4556677889999999999999999999999999999999999999875433322 34557777665532 2 3577
Q ss_pred HHHhcc
Q 005203 593 SSNISY 598 (709)
Q Consensus 593 ~eNI~~ 598 (709)
.+++..
T Consensus 90 ~~~l~~ 95 (186)
T cd01130 90 ADLLRS 95 (186)
T ss_pred HHHHHH
Confidence 777743
No 469
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.55 E-value=4.5e-08 Score=108.86 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=61.6
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc---eEEECCEeCCCCCHHHH------hcceEEEcccC
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG---QILIDGFPIKEVDIKWL------RGRIGFVGQEP 585 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G---~I~idG~di~~~~~~~l------R~~I~~V~Qd~ 585 (709)
..+++++ ++|.+||+++|+|+||||||||+++|+|+++|+.+ .|-.+|.+++++..+.+ |..+++++||.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4689999 99999999999999999999999999999999864 34445555555443433 55799999997
Q ss_pred ccc-ccCHHHHh
Q 005203 586 KLF-RMDISSNI 596 (709)
Q Consensus 586 ~LF-~gTI~eNI 596 (709)
..+ .-+..+|.
T Consensus 222 s~~~rl~a~e~a 233 (434)
T PRK07196 222 SPLMRIKATELC 233 (434)
T ss_pred ChhhhHHHHHHH
Confidence 655 23344444
No 470
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.55 E-value=6.9e-08 Score=100.02 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=37.2
Q ss_pred HhccCCCEEEEeCCCC------CCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 651 AILRDPTILILDEATS------ALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 651 ALlr~p~ILILDEaTS------aLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
+..++|+++|+| |++ .+|...-..+.+.|+++.++ .++|+|+++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~--~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQ--TGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHH--hCCEEEEEeccCc
Confidence 445799999999 665 46888878888888776543 3699999999764
No 471
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.50 E-value=1.3e-07 Score=118.74 Aligned_cols=64 Identities=19% Similarity=0.279 Sum_probs=58.1
Q ss_pred CCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 637 LLSGGQKQRIAIARAIL----RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 637 ~LSGGQkQRIaLARALl----r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
.||||||++++||+++. ++||++|||||+++||+.+...+.+.|..+.+ +.++|+|||+..++.
T Consensus 1074 ~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~----~~~~i~~t~~~~~~~ 1141 (1164)
T TIGR02169 1074 AMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG----EAQFIVVSLRSPMIE 1141 (1164)
T ss_pred hcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC----CCeEEEEECcHHHHH
Confidence 69999999999999997 57899999999999999999999999988754 378999999998764
No 472
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.50 E-value=1.4e-07 Score=103.36 Aligned_cols=88 Identities=25% Similarity=0.262 Sum_probs=67.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCC--Cc-ceEEECCEeCCCCCHHHHhcceEEEcccCc-----ccccCHHHHhc
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEP--TN-GQILIDGFPIKEVDIKWLRGRIGFVGQEPK-----LFRMDISSNIS 597 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p--~~-G~I~idG~di~~~~~~~lR~~I~~V~Qd~~-----LF~gTI~eNI~ 597 (709)
++|+.++|+||+||||||+++.|++.+.+ .+ +.|...+.|+ ++..+.+++..++|.|... -|..+|+++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48999999999999999999999999853 33 4676666666 4787788777888988753 68999999988
Q ss_pred cCCCCCC-------CHHHHHHHHHHH
Q 005203 598 YGCTQDI-------KQQDIEWAAKQA 616 (709)
Q Consensus 598 ~g~~~~~-------~~e~i~~aa~~a 616 (709)
.. | +. |.|.+..|++.|
T Consensus 211 ~~-P-d~i~vGEiRd~et~~~al~aa 234 (358)
T TIGR02524 211 RK-P-HAILVGEARDAETISAALEAA 234 (358)
T ss_pred cC-C-CEEeeeeeCCHHHHHHHHHHH
Confidence 64 4 32 455556676664
No 473
>PRK02224 chromosome segregation protein; Provisional
Probab=98.45 E-value=2.7e-07 Score=113.03 Aligned_cols=69 Identities=29% Similarity=0.385 Sum_probs=58.5
Q ss_pred CCCChHHHH------HHHHHHHhccC------CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCC-cEEEEEecChhh
Q 005203 636 DLLSGGQKQ------RIAIARAILRD------PTILILDEATSALDAESEHNIKGVLRAVRSDTMTR-RTVLVIAHRLIS 702 (709)
Q Consensus 636 ~~LSGGQkQ------RIaLARALlr~------p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~-~TvIiIAHRlst 702 (709)
..||||||| |+++||++..+ ++++||||||++||+.....+.+.|..+... | .++|+|||+++.
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~---~~~qviiish~~~~ 856 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRL---GVEQIVVVSHDDEL 856 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhc---CCCeEEEEECChHH
Confidence 389999999 99999999964 2679999999999999999999999887531 3 489999999998
Q ss_pred hhhhcC
Q 005203 703 TALSFD 708 (709)
Q Consensus 703 i~~~~~ 708 (709)
+.. +|
T Consensus 857 ~~~-ad 861 (880)
T PRK02224 857 VGA-AD 861 (880)
T ss_pred HHh-cC
Confidence 764 44
No 474
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.45 E-value=1.5e-06 Score=85.01 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=51.8
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 637 LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 637 ~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
.-|.|+-=-=.+.|.+-+ .-|.|||||-|+|-+...-.+...|+++.+. |--+||.||.|=
T Consensus 129 ~~SHGEsf~~i~~~rf~~-~GiYiLDEPEa~LSp~RQlella~l~~la~s---GaQ~IiATHSPi 189 (233)
T COG3910 129 HMSHGESFLAIFHNRFNG-QGIYILDEPEAALSPSRQLELLAILRDLADS---GAQIIIATHSPI 189 (233)
T ss_pred hhccchHHHHHHHHHhcc-CceEEecCccccCCHHHHHHHHHHHHHHHhc---CCeEEEEecChh
Confidence 569999877777777765 5699999999999999999999999988754 688999999984
No 475
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=98.44 E-value=0.0024 Score=67.83 Aligned_cols=219 Identities=11% Similarity=0.050 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---
Q 005203 248 ANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLG--- 324 (709)
Q Consensus 248 ~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~La--- 324 (709)
.......+||..+-+..++ .|=..||.----.|+..|+.+..+..-..-..++.++++.+..+-+++.+|-.+.
T Consensus 79 f~shyiFrWR~Am~~yY~~---~W~~~r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~simtliaFlPiL~~lS~~V~~lp 155 (315)
T PF05992_consen 79 FVSHYIFRWRTAMNEYYMS---HWPKLRHIEGASQRIQEDTMRFAKIMEDLGVSFIRSIMTLIAFLPILWELSSHVSELP 155 (315)
T ss_pred HHHHHHHHHHHHhhHHHHH---HHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCc
Confidence 3344567788777776654 2333366655678999999888887776667777777777777777766553332
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHH
Q 005203 325 ----------LCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLA 394 (709)
Q Consensus 325 ----------lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~ 394 (709)
..+++....-.++..+.+.+....+...++..|.... |.+-|=.. ......+...+.|.+ ..
T Consensus 156 ~~g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRK---eLV~gED~-~~ra~~~tl~eLF~~----Vr 227 (315)
T PF05992_consen 156 FFGEIPHSLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRK---ELVYGEDD-ANRAQPPTLRELFSN----VR 227 (315)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHH---HHHhcCcc-cccCCchhHHHHHHH----HH
Confidence 1122222222222344455555555444444444443 33333222 111122222223333 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 395 DINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKV 474 (709)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl 474 (709)
+...+.-..+..++........+..++...+-+..+..|.+|.|.+.......+++.++.+.+.+.+..+.+.....+|+
T Consensus 228 ~Ny~rly~hy~yfni~~~~y~q~~~i~~~i~l~Psi~ag~iTLG~~~Qi~~aF~~V~~sfq~lv~~W~tivEL~Si~kRL 307 (315)
T PF05992_consen 228 RNYFRLYFHYMYFNIARISYLQFDVIFPYIILIPSIVAGAITLGVLQQISNAFGQVRSSFQYLVNSWTTIVELRSIYKRL 307 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333333444444444444445555555666667789999999999999999999999999999999999999889999
Q ss_pred HHH
Q 005203 475 FQL 477 (709)
Q Consensus 475 ~~i 477 (709)
.++
T Consensus 308 ~~F 310 (315)
T PF05992_consen 308 RAF 310 (315)
T ss_pred HHH
Confidence 876
No 476
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.43 E-value=2.5e-07 Score=92.09 Aligned_cols=55 Identities=27% Similarity=0.305 Sum_probs=48.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccC
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEP 585 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~ 585 (709)
|+.++|+||||||||||++.|.+.+.| .+.+++..+........++.+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 889999999999999999999999876 6888898888776677788899999983
No 477
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.40 E-value=1.9e-07 Score=92.40 Aligned_cols=53 Identities=28% Similarity=0.399 Sum_probs=42.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhc-ceEEEcccC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG-RIGFVGQEP 585 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~-~I~~V~Qd~ 585 (709)
+||.++|+|+|||||||+++.|.|++.| +.+||.++.. ...+|+ ..++.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~ 55 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDE 55 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcc
Confidence 6999999999999999999999999987 5899988853 333443 355666664
No 478
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.38 E-value=3e-07 Score=92.35 Aligned_cols=108 Identities=16% Similarity=0.188 Sum_probs=60.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHH-----HhccCCCCCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS-----NISYGCTQDI 604 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~e-----NI~~g~~~~~ 604 (709)
.++|+||||||||||++.|.+++ ..|.+.+-+.| ++...-+..+ +..+..+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD-------------------SYYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec-------------------ccccccccccHHHhccCCCCCCCcc
Confidence 37999999999999999999998 33444443333 2221111111 1222323223
Q ss_pred CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 005203 605 KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDA 670 (709)
Q Consensus 605 ~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~ 670 (709)
+.+.+.+.++.... |-....---+.|.|++++-.+ ...+|+++|+|++.+..++
T Consensus 60 ~~~~~~~~l~~l~~---------~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 DFDLLISHLQDLKN---------GKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cHHHHHHHHHHHHC---------CCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 33433333332221 211111112567777765444 5688999999999999875
No 479
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.36 E-value=4e-07 Score=92.24 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=36.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCccccc
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRM 590 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~g 590 (709)
|+|+.++|+||||||||||++.|.+++++ ..+++++||+++++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~---------------------~~~~~i~~D~~~~~~ 47 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK---------------------LEIVIISQDNYYKDQ 47 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc---------------------cCCeEecccccccCh
Confidence 67999999999999999999999999863 246667777766643
No 480
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.36 E-value=5.2e-08 Score=111.15 Aligned_cols=145 Identities=10% Similarity=0.069 Sum_probs=88.5
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHH--hcCCCCCcceEEECCEeCCCCCHHHHhcc---eEEEcccCcccccCHHHHhcc
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLL--LRLYEPTNGQILIDGFPIKEVDIKWLRGR---IGFVGQEPKLFRMDISSNISY 598 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLL--lgl~~p~~G~I~idG~di~~~~~~~lR~~---I~~V~Qd~~LF~gTI~eNI~~ 598 (709)
-+++|..+.|.|++|||||||..-. .|.-++.+..+++... -+.++++++ +|+-.|+..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 5899999999999999999999855 4666666777888653 234444433 4444433210 112222
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHH--HHhccCCCEEEEeCCCCCCCHHHHHHH
Q 005203 599 GCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA--RAILRDPTILILDEATSALDAESEHNI 676 (709)
Q Consensus 599 g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA--RALlr~p~ILILDEaTSaLD~~tE~~I 676 (709)
-+. . +.......++..++.+.+..++ ..+|+||+||+.|+ .|+..+|+.. ....+.+
T Consensus 88 ~~~-~-~~~~~~~~~~~~~l~~~l~~i~---------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l 146 (484)
T TIGR02655 88 LDA-S-PDPEGQDVVGGFDLSALIERIN---------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREI 146 (484)
T ss_pred Eec-C-chhccccccccCCHHHHHHHHH---------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHH
Confidence 211 0 1111111222233333333322 25899999999999 6776665543 4556677
Q ss_pred HHHHHHhhccCCCCcEEEEEecChh
Q 005203 677 KGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 677 ~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
.+.++.+++. |+|+|+++|..+
T Consensus 147 ~~Li~~L~~~---g~TvLLtsh~~~ 168 (484)
T TIGR02655 147 FRLVARLKQI---GVTTVMTTERIE 168 (484)
T ss_pred HHHHHHHHHC---CCEEEEEecCcc
Confidence 7777777643 799999999875
No 481
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.33 E-value=2.5e-06 Score=93.26 Aligned_cols=114 Identities=25% Similarity=0.329 Sum_probs=73.9
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCC
Q 005203 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLYE-PTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQD 603 (709)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~ 603 (709)
.+++..+.|.||+||||||+++.+++.++ +.+|.|..-+.|+.-. +....+.+.|.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q~------------------- 175 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQR------------------- 175 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEcc-------------------
Confidence 46799999999999999999999998776 4567777655443211 00111111111
Q ss_pred CCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 005203 604 IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAV 683 (709)
Q Consensus 604 ~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l 683 (709)
.+|....+ --=++++||-.+|+++++||++ |.++.....++-
T Consensus 176 ----------------------------evg~~~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa--- 217 (343)
T TIGR01420 176 ----------------------------EVGLDTLS----FANALRAALREDPDVILIGEMR---DLETVELALTAA--- 217 (343)
T ss_pred ----------------------------ccCCCCcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHHH---
Confidence 01110000 1224678888999999999997 888776544432
Q ss_pred hccCCCCcEEEEEecChhhh
Q 005203 684 RSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 684 ~~~~~~~~TvIiIAHRlsti 703 (709)
. .|.+++...|..+..
T Consensus 218 ~----tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 218 E----TGHLVFGTLHTNSAA 233 (343)
T ss_pred H----cCCcEEEEEcCCCHH
Confidence 2 258999999997654
No 482
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.32 E-value=3.5e-07 Score=90.13 Aligned_cols=77 Identities=32% Similarity=0.400 Sum_probs=55.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCC------------CCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHH
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRLYE------------PTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSN 595 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl~~------------p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eN 595 (709)
|+.++|+||||||||||++.|++.++ |..|+ ++|.+..-++.+.+.+.+ .++..+..+++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999874 44444 366666656666666653 57778888888887
Q ss_pred hccCCCCCCCHHHHHHHHH
Q 005203 596 ISYGCTQDIKQQDIEWAAK 614 (709)
Q Consensus 596 I~~g~~~~~~~e~i~~aa~ 614 (709)
.||. ..+.+.++++
T Consensus 76 -~y~~----~~~~i~~~~~ 89 (180)
T TIGR03263 76 -YYGT----PKSPVEEALA 89 (180)
T ss_pred -eeCC----cHHHHHHHHH
Confidence 3653 2455555544
No 483
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.32 E-value=1.2e-06 Score=90.12 Aligned_cols=136 Identities=17% Similarity=0.221 Sum_probs=81.8
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHh-cCCCC------CcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHh
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLL-RLYEP------TNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNI 596 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLl-gl~~p------~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI 596 (709)
=|++|+.+.|+||||||||||+.-++ ....| .++.|++|+.+ .++.+.+++.. |.-.....++.+||
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~----~~~~~~~~~~~~~i 88 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIA----ERFGLDPEEVLDNI 88 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHH----HHhccChHhHhcCE
Confidence 38999999999999999999998776 33344 37899999866 23444443321 22112234677888
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC----CHH-
Q 005203 597 SYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSAL----DAE- 671 (709)
Q Consensus 597 ~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaL----D~~- 671 (709)
.+.+. .+.+++.+..+. +.+.+.+- .+++++++|--++-. +.+
T Consensus 89 ~~~~~--~~~~~l~~~l~~--l~~~l~~~----------------------------~~~~liVIDSis~~~~~~~~~~~ 136 (235)
T cd01123 89 YVARA--YNSDHQLQLLEE--LEAILIES----------------------------SRIKLVIVDSVTALFRAEFDGRG 136 (235)
T ss_pred EEEec--CCHHHHHHHHHH--HHHHHhhc----------------------------CCeeEEEEeCcHHHHHHHhcCCc
Confidence 87743 344554443332 33333321 168999999988642 211
Q ss_pred --HH--H---HHHHHHHHhhccCCCCcEEEEEecC
Q 005203 672 --SE--H---NIKGVLRAVRSDTMTRRTVLVIAHR 699 (709)
Q Consensus 672 --tE--~---~I~~~L~~l~~~~~~~~TvIiIAHR 699 (709)
.+ + .+...|+++.+. .++|+|++.|-
T Consensus 137 ~~~~r~~~l~~~~~~L~~la~~--~~~avl~tn~~ 169 (235)
T cd01123 137 ELAERQQHLAKLLRTLKRLADE--FNVAVVITNQV 169 (235)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH--hCCEEEEeccE
Confidence 11 2 334455544332 35888888764
No 484
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.31 E-value=1e-06 Score=86.85 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=49.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE-----------CCEeCCCCCHHHHh-----cceEEEcccCcccccC
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI-----------DGFPIKEVDIKWLR-----GRIGFVGQEPKLFRMD 591 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~i-----------dG~di~~~~~~~lR-----~~I~~V~Qd~~LF~gT 591 (709)
|+.++|+|||||||||+++.|++.+.+. |.+.+ +|.+....+.+.+. +.++.+.|...++.|+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGI 79 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccC
Confidence 6789999999999999999999988654 65544 77777777766653 3588999987666554
No 485
>PLN02796 D-glycerate 3-kinase
Probab=98.31 E-value=2.2e-07 Score=100.23 Aligned_cols=62 Identities=26% Similarity=0.373 Sum_probs=54.4
Q ss_pred CccceeeeEEe---cCCcE-----EEEEcCCCCcHHHHHHHHhcCCCCC---cceEEECCEeCCCCCHHHHhc
Q 005203 515 VPVLQHVNISV---NPGEV-----VAIAGLSGSGKSTLVNLLLRLYEPT---NGQILIDGFPIKEVDIKWLRG 576 (709)
Q Consensus 515 ~~vL~~lsl~I---~~Ge~-----vAIVG~SGsGKSTLlkLLlgl~~p~---~G~I~idG~di~~~~~~~lR~ 576 (709)
.++++++++.+ ++|+. ++|+|+||||||||++.|.+++++. .|.|.+||..+...+...+++
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 47899999988 67887 9999999999999999999999875 589999999988777777765
No 486
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.30 E-value=1.3e-05 Score=97.02 Aligned_cols=53 Identities=23% Similarity=0.321 Sum_probs=45.1
Q ss_pred HhccCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhh
Q 005203 651 AILRDPTILILDEATSALD-AESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALS 706 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD-~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~ 706 (709)
.+-.+|.++++|||...|| +...+.+.+.++..++. +..++++||.++.+..|
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~---~~~~i~~TQ~~~d~~~s 691 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKL---NTFVIFATQSVEDASKS 691 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHc---CCEEEEEeCCHHHHHhC
Confidence 4567899999999999999 78888999999888653 67999999999887654
No 487
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.30 E-value=2e-06 Score=100.72 Aligned_cols=107 Identities=22% Similarity=0.268 Sum_probs=66.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--------eEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccC
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPTNG--------QILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYG 599 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G--------~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g 599 (709)
.+.+.|+||+||||||+++++.++..+.+| -|.+||.++. ++...+. |-.++
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i~-------------------~~llg 234 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREVT-------------------NPLLG 234 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHHh-------------------HHhcC
Confidence 457999999999999999999999876554 4888887763 3333221 21222
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHHHcCCCCccccc-CC-CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH
Q 005203 600 CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLV-DD-DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIK 677 (709)
Q Consensus 600 ~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~v-Ge-~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~ 677 (709)
...+...+...+.++.. |+.... |. ..+||| +|+||| +..||......+.
T Consensus 235 ~~~~~~~~~a~~~l~~~-----------gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll 286 (615)
T TIGR02903 235 SVHDPIYQGARRDLAET-----------GVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLL 286 (615)
T ss_pred CccHHHHHHHHHHHHHc-----------CCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHH
Confidence 11010011111111222 221111 12 367888 999999 7999999999999
Q ss_pred HHHHH
Q 005203 678 GVLRA 682 (709)
Q Consensus 678 ~~L~~ 682 (709)
+.+++
T Consensus 287 ~~Le~ 291 (615)
T TIGR02903 287 KVLED 291 (615)
T ss_pred HHHhh
Confidence 88865
No 488
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.28 E-value=1.4e-06 Score=88.25 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=49.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCccccc---CHH--HHhccCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRM---DIS--SNISYGC 600 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~g---TI~--eNI~~g~ 600 (709)
+++..|+|+|+||||||||++.|.+.+. ...+++++||++.++. +.. .++.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------------~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~ 62 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------------DESIAVIPQDSYYKDQSHLSFEERVKTNYDH 62 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------------CCceEEEeCCccccCcccCCHHHhcccCccC
Confidence 4688999999999999999999999871 2458888999887765 233 3444554
Q ss_pred CCCCCHHHHHHHHHHH
Q 005203 601 TQDIKQQDIEWAAKQA 616 (709)
Q Consensus 601 ~~~~~~e~i~~aa~~a 616 (709)
+...+.+.+.+.++..
T Consensus 63 ~~~~~~~~l~~~l~~l 78 (209)
T PRK05480 63 PDAFDHDLLIEHLKAL 78 (209)
T ss_pred cccccHHHHHHHHHHH
Confidence 4334555565554443
No 489
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.27 E-value=4.3e-07 Score=86.08 Aligned_cols=72 Identities=29% Similarity=0.451 Sum_probs=57.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCC-------------CcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhc
Q 005203 531 VAIAGLSGSGKSTLVNLLLRLYEP-------------TNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNIS 597 (709)
Q Consensus 531 vAIVG~SGsGKSTLlkLLlgl~~p-------------~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~ 597 (709)
++|+||||||||||++.|++.+++ ..|+ +||++..-++...+++. +.|+.++..++..+| .
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~-~ 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN-Y 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-E
Confidence 789999999999999999999754 4455 58888888888888874 678888999999988 5
Q ss_pred cCCCCCCCHHHHHHH
Q 005203 598 YGCTQDIKQQDIEWA 612 (709)
Q Consensus 598 ~g~~~~~~~e~i~~a 612 (709)
+|.+ .+.+.++
T Consensus 76 yg~~----~~~i~~~ 86 (137)
T cd00071 76 YGTS----KAAVEEA 86 (137)
T ss_pred ecCc----HHHHHHH
Confidence 7743 4445444
No 490
>PTZ00035 Rad51 protein; Provisional
Probab=98.23 E-value=4.3e-06 Score=91.02 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=59.4
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCC-C-----CcceE-EECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHh
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-P-----TNGQI-LIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNI 596 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-p-----~~G~I-~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI 596 (709)
=|++|+.+.|+||+|||||||...++...+ | .+|.+ +||+... ++.+.+. .+.|...+...++.+||
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~--f~~eri~----~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT--FRPERIV----QIAERFGLDPEDVLDNI 187 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC--CCHHHHH----HHHHHhCCChHhHhhce
Confidence 589999999999999999999998886655 4 45666 8888654 4555433 34677677777899999
Q ss_pred ccCCCCCCCHHHHHHH
Q 005203 597 SYGCTQDIKQQDIEWA 612 (709)
Q Consensus 597 ~~g~~~~~~~e~i~~a 612 (709)
.+... .+.++..+.
T Consensus 188 ~~~~~--~~~e~~~~~ 201 (337)
T PTZ00035 188 AYARA--YNHEHQMQL 201 (337)
T ss_pred EEEcc--CCHHHHHHH
Confidence 98843 344444443
No 491
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.21 E-value=3.2e-06 Score=94.06 Aligned_cols=100 Identities=20% Similarity=0.253 Sum_probs=72.6
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC--------HHHHhcceEEEcccCc
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD--------IKWLRGRIGFVGQEPK 586 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~--------~~~lR~~I~~V~Qd~~ 586 (709)
..+++++ +++.+||+++|+|+||+|||||++.|++..+|+.|.|...|++-++.. .+.+++.+.++.|-
T Consensus 125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~ts-- 201 (413)
T TIGR03497 125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATS-- 201 (413)
T ss_pred ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECC--
Confidence 5789999 999999999999999999999999999999999999999988765532 11122233333332
Q ss_pred ccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccC
Q 005203 587 LFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVD 634 (709)
Q Consensus 587 LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vG 634 (709)
++...+++..+--...+.|+... +|+|.++=
T Consensus 202 ---------------d~~~~~r~~~~~~a~tiAEyfr~--~G~~Vll~ 232 (413)
T TIGR03497 202 ---------------DQPALMRLKAAFTATAIAEYFRD--QGKDVLLM 232 (413)
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEE
Confidence 13345666665555566777774 48887664
No 492
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.20 E-value=1.1e-06 Score=98.10 Aligned_cols=102 Identities=18% Similarity=0.206 Sum_probs=72.3
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CcceEEE---CCEeCCCCCHHHHh---cceEEE-----c
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-TNGQILI---DGFPIKEVDIKWLR---GRIGFV-----G 582 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-~~G~I~i---dG~di~~~~~~~lR---~~I~~V-----~ 582 (709)
..+++++ ++|.+||+++|+|+||||||||++.|+|+.++ +.|.|.+ +|.++.++..+.++ .+.++| +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 3578887 99999999999999999999999999999854 4467776 45777666655554 346666 8
Q ss_pred ccCc------ccccCHHHHhccCCCCCC-----CHHHHHHHHHHHhh
Q 005203 583 QEPK------LFRMDISSNISYGCTQDI-----KQQDIEWAAKQAYA 618 (709)
Q Consensus 583 Qd~~------LF~gTI~eNI~~g~~~~~-----~~e~i~~aa~~a~l 618 (709)
|+|. ....+|+|.+..-.. +. +..+..++.+.+++
T Consensus 231 q~p~~rlnp~~va~~IAE~~r~~g~-~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 231 QSSQLRLNAAYVGTAIAEYFRDQGK-TVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHcCC-CcchhhhHHHHHHHHHHHhCc
Confidence 8663 355668887764312 21 34556666666665
No 493
>PRK15494 era GTPase Era; Provisional
Probab=98.19 E-value=9.9e-07 Score=96.23 Aligned_cols=57 Identities=25% Similarity=0.340 Sum_probs=51.1
Q ss_pred cCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCc-------EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 494 QRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGE-------VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 494 ~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge-------~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+...|.++++|++|+|+. .++.++++++++++|+ +++|||++|+|||||++-|.|-.
T Consensus 13 ~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 13 EEFKGDTEALAAAVREDA--STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hhhCCccccccccccCCC--CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 345788999999999994 4789999999999999 99999999999999999998753
No 494
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.18 E-value=1.3e-05 Score=90.11 Aligned_cols=161 Identities=20% Similarity=0.201 Sum_probs=102.5
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHH
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (709)
..+++++ ++|.+||+++|+|+||+|||||++.|.|+.+|+.|.|...|..-+++. ++.+. ++.+.-.+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~--~~~~~---------~~~~~~l~ 218 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVR--EFIEH---------DLGEEGLK 218 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHH--HHHHH---------Hhcccccc
Confidence 5789999 999999999999999999999999999999999998887776555432 11110 11111111
Q ss_pred Hhc-c-CCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCC-hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 005203 595 NIS-Y-GCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLS-GGQKQRIAIARAILRDPTILILDEATSALDAE 671 (709)
Q Consensus 595 NI~-~-g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LS-GGQkQRIaLARALlr~p~ILILDEaTSaLD~~ 671 (709)
+-. + ...++..-++...+--...+.|+... +|+|.++==.+|+ =-|.|| .++=+ ..+|| .+.+.|+.
T Consensus 219 ~tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr~A~A~R-Eisl~-~ge~P------~~~Gypp~ 288 (440)
T TIGR01026 219 RSVVVVATSDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTRFAMAQR-EIGLA-AGEPP------ATKGYTPS 288 (440)
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHHHHHHHH-HHHHh-cCCCC------cccccChh
Confidence 211 1 11113334555544444455577764 5999876432232 223333 22211 23444 67799999
Q ss_pred HHHHHHHHHHHhhccCCCCc-------EEEEEecCh
Q 005203 672 SEHNIKGVLRAVRSDTMTRR-------TVLVIAHRL 700 (709)
Q Consensus 672 tE~~I~~~L~~l~~~~~~~~-------TvIiIAHRl 700 (709)
.-..+-+.+++...+ +. |+++-+|+.
T Consensus 289 ~~~~l~~l~ERag~~---~~GSIT~i~tVl~~~~d~ 321 (440)
T TIGR01026 289 VFSTLPRLLERAGAS---GKGSITAFYTVLVEGDDM 321 (440)
T ss_pred HHHHHHHHHHHhccC---CCCeeeEEEEEEccCcCC
Confidence 999999988876533 45 777778876
No 495
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.18 E-value=1.8e-05 Score=95.93 Aligned_cols=54 Identities=28% Similarity=0.314 Sum_probs=44.8
Q ss_pred HHhccCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhh
Q 005203 650 RAILRDPTILILDEATSALD-AESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALS 706 (709)
Q Consensus 650 RALlr~p~ILILDEaTSaLD-~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~ 706 (709)
+.+-.+|+++++|||++.|| +.....+.+.++..++. +.++|++||.++.+..+
T Consensus 630 ~~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~---~~~~i~~TQ~~~d~~~s 684 (811)
T PRK13873 630 DRFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKK---NVSVIFATQSLADIDGS 684 (811)
T ss_pred HHhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHc---CCEEEEEECCHHHHhcC
Confidence 44456899999999999999 67788888888887654 68999999999877644
No 496
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.17 E-value=4.8e-06 Score=104.70 Aligned_cols=45 Identities=29% Similarity=0.419 Sum_probs=37.2
Q ss_pred eeeEEecCCcEEEEEcCCCCcHHHHHHHHh-cCCCCCcceEEECCE
Q 005203 520 HVNISVNPGEVVAIAGLSGSGKSTLVNLLL-RLYEPTNGQILIDGF 564 (709)
Q Consensus 520 ~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLl-gl~~p~~G~I~idG~ 564 (709)
-++++.+.++.++|+|++|+|||||++.+. ++....+|.+++++.
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 346677889999999999999999999995 544556899999863
No 497
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.16 E-value=2.6e-06 Score=107.87 Aligned_cols=60 Identities=27% Similarity=0.424 Sum_probs=53.4
Q ss_pred CCCChHHHHHHH----HHHH--------hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 636 DLLSGGQKQRIA----IARA--------ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 636 ~~LSGGQkQRIa----LARA--------Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
..||||||||++ +|+| +..+|++++|||||++||+.+...+.+.+.++ +.++|+++|++-
T Consensus 1246 ~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l------~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1246 GPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL------DLDFVMTSEREW 1317 (1353)
T ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh------CCCEEEEccchh
Confidence 479999999996 6866 45799999999999999999999999999887 389999999873
No 498
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.15 E-value=3.8e-06 Score=90.53 Aligned_cols=106 Identities=20% Similarity=0.171 Sum_probs=70.6
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC---HHHHhcceEEEcccCcccccC
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD---IKWLRGRIGFVGQEPKLFRMD 591 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~---~~~lR~~I~~V~Qd~~LF~gT 591 (709)
..+++++ +.+.+||+++|+|+||+|||||++.|+|+.+|+.|.+..-|.+-+++. .+.... -+.+...++..|
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev~~~~~~~~~~---~~l~rtvvv~~t 132 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVREFIEKDLGE---EGLKRSVVVVAT 132 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccHHHHHHHHHhc---CccceEEEEEcC
Confidence 5799999 999999999999999999999999999999999998888665443322 111111 001111111111
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC
Q 005203 592 ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD 635 (709)
Q Consensus 592 I~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe 635 (709)
.++...+++..+--...+.|+... +|.|.++=-
T Consensus 133 ---------~d~~~~~r~~~~~~a~~~AEyfr~--~g~~Vll~~ 165 (326)
T cd01136 133 ---------SDESPLLRVKAAYTATAIAEYFRD--QGKDVLLLM 165 (326)
T ss_pred ---------CCCCHHHHHHHHHHHHHHHHHHHH--cCCCeEEEe
Confidence 113345666665555566777765 588887643
No 499
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.13 E-value=1.3e-05 Score=74.36 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=41.2
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcc--CCCCcEEEEEecChh
Q 005203 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSD--TMTRRTVLVIAHRLI 701 (709)
Q Consensus 643 kQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~--~~~~~TvIiIAHRls 701 (709)
++.....++...++.++++||+-.. +.+....+.+.+...... ...+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5667777788889999999998764 556666777777665321 013578888888654
No 500
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.13 E-value=8.7e-06 Score=83.21 Aligned_cols=80 Identities=20% Similarity=0.131 Sum_probs=55.2
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCC-CCC------cceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHh
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLY-EPT------NGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNI 596 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~-~p~------~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI 596 (709)
=+++|+.+.|+||+|||||||+.-++... .+. .+.+++++.+ .++...+++......|+ ..++.+|+
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~--~~~~~rl~~~~~~~~~~----~~~~~~~i 88 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG--AFRPERLVQLAVRFGLD----PEEVLDNI 88 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC--CCCHHHHHHHHHHhccc----hhhhhccE
Confidence 48999999999999999999998777554 444 6788888854 35566666544444444 34677888
Q ss_pred ccCCCCCCCHHHHHH
Q 005203 597 SYGCTQDIKQQDIEW 611 (709)
Q Consensus 597 ~~g~~~~~~~e~i~~ 611 (709)
.+.+. .+.+++.+
T Consensus 89 ~~~~~--~~~~~~~~ 101 (226)
T cd01393 89 YVARP--YNGEQQLE 101 (226)
T ss_pred EEEeC--CCHHHHHH
Confidence 77643 34444443
Done!