Query 005203
Match_columns 709
No_of_seqs 304 out of 2809
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 18:31:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 7.4E-91 2.5E-95 866.6 66.9 474 227-705 142-618 (1321)
2 3qf4_A ABC transporter, ATP-bi 100.0 9.4E-88 3.2E-92 778.1 66.0 530 172-708 13-545 (587)
3 3qf4_B Uncharacterized ABC tra 100.0 6.2E-88 2.1E-92 781.4 62.2 534 166-708 21-557 (598)
4 4a82_A Cystic fibrosis transme 100.0 1.2E-87 4E-92 776.4 64.0 532 170-708 2-543 (578)
5 3b5x_A Lipid A export ATP-bind 100.0 5.2E-86 1.8E-90 763.4 74.1 532 168-708 11-546 (582)
6 2yl4_A ATP-binding cassette SU 100.0 7.4E-86 2.5E-90 764.0 74.0 535 169-708 6-549 (595)
7 3b60_A Lipid A export ATP-bind 100.0 6.5E-86 2.2E-90 762.6 69.7 532 168-708 11-546 (582)
8 4f4c_A Multidrug resistance pr 100.0 1.9E-88 6.5E-93 844.9 50.6 530 172-705 742-1281(1321)
9 3g5u_A MCG1178, multidrug resi 100.0 7E-84 2.4E-88 802.1 58.9 532 171-708 36-592 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 2.5E-77 8.6E-82 743.3 52.4 532 172-708 695-1237(1284)
11 3nh6_A ATP-binding cassette SU 100.0 8.5E-61 2.9E-65 509.0 22.7 238 463-708 17-256 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 7.1E-52 2.4E-56 428.7 26.8 204 498-708 6-211 (247)
13 2ghi_A Transport protein; mult 100.0 1.4E-50 4.7E-55 422.1 24.2 204 498-708 16-221 (260)
14 1mv5_A LMRA, multidrug resista 100.0 2.8E-51 9.4E-56 423.3 17.8 201 500-708 2-205 (243)
15 2ixe_A Antigen peptide transpo 100.0 2.8E-50 9.5E-55 422.2 25.1 208 497-708 14-224 (271)
16 3gd7_A Fusion complex of cysti 100.0 3.5E-48 1.2E-52 424.5 20.8 203 497-708 17-221 (390)
17 2pze_A Cystic fibrosis transme 100.0 5E-47 1.7E-51 388.1 21.6 190 498-708 5-197 (229)
18 3tif_A Uncharacterized ABC tra 100.0 3.2E-47 1.1E-51 391.0 17.4 196 500-708 2-213 (235)
19 2cbz_A Multidrug resistance-as 100.0 7E-47 2.4E-51 388.9 19.3 189 499-708 3-196 (237)
20 3tui_C Methionine import ATP-b 100.0 3E-46 1E-50 404.4 20.7 200 498-708 23-232 (366)
21 3gfo_A Cobalt import ATP-bindi 100.0 1.5E-46 5.1E-51 394.3 17.4 196 499-708 7-212 (275)
22 1ji0_A ABC transporter; ATP bi 100.0 9.2E-46 3.1E-50 381.3 22.3 198 499-708 6-207 (240)
23 2olj_A Amino acid ABC transpor 100.0 1.5E-45 5.2E-50 384.3 19.7 195 499-708 24-227 (263)
24 2pcj_A ABC transporter, lipopr 100.0 1.4E-45 4.9E-50 376.0 18.8 194 499-708 4-207 (224)
25 4g1u_C Hemin import ATP-bindin 100.0 1.9E-45 6.5E-50 384.5 19.8 196 499-708 11-216 (266)
26 2yz2_A Putative ABC transporte 100.0 3.2E-45 1.1E-49 382.9 21.4 194 500-708 3-206 (266)
27 1vpl_A ABC transporter, ATP-bi 100.0 2.7E-45 9.2E-50 381.1 20.6 196 497-708 13-214 (256)
28 1g6h_A High-affinity branched- 100.0 2.9E-45 9.9E-50 381.4 18.8 197 499-708 7-221 (257)
29 1b0u_A Histidine permease; ABC 100.0 4.8E-45 1.6E-49 380.7 19.3 195 499-708 6-221 (262)
30 1sgw_A Putative ABC transporte 100.0 3.2E-45 1.1E-49 370.7 15.9 187 498-708 9-201 (214)
31 2ihy_A ABC transporter, ATP-bi 100.0 5.8E-45 2E-49 383.2 16.8 193 499-708 21-231 (279)
32 3fvq_A Fe(3+) IONS import ATP- 100.0 1.4E-44 4.8E-49 391.0 19.5 196 499-708 4-207 (359)
33 2bbs_A Cystic fibrosis transme 100.0 2.1E-44 7.2E-49 380.7 19.3 207 473-708 17-226 (290)
34 2qi9_C Vitamin B12 import ATP- 100.0 2.5E-44 8.4E-49 372.4 19.2 189 500-708 5-201 (249)
35 3rlf_A Maltose/maltodextrin im 100.0 1.9E-44 6.5E-49 392.5 18.9 194 499-708 3-202 (381)
36 2d2e_A SUFC protein; ABC-ATPas 100.0 2.7E-44 9.2E-49 372.6 15.3 194 500-708 4-212 (250)
37 1z47_A CYSA, putative ABC-tran 100.0 6.7E-44 2.3E-48 385.7 18.9 196 498-708 13-214 (355)
38 2yyz_A Sugar ABC transporter, 100.0 1.3E-43 4.4E-48 384.4 21.1 194 499-708 3-202 (359)
39 2onk_A Molybdate/tungstate ABC 100.0 8.4E-44 2.9E-48 366.6 17.4 189 500-708 2-195 (240)
40 2it1_A 362AA long hypothetical 100.0 7E-44 2.4E-48 386.8 17.6 194 499-708 3-202 (362)
41 3d31_A Sulfate/molybdate ABC t 100.0 1.4E-43 4.7E-48 382.9 19.5 192 500-708 2-196 (348)
42 1oxx_K GLCV, glucose, ABC tran 100.0 7.9E-44 2.7E-48 385.9 17.7 196 499-708 3-209 (353)
43 1v43_A Sugar-binding transport 100.0 2.5E-43 8.4E-48 383.8 20.8 194 499-708 11-210 (372)
44 2nq2_C Hypothetical ABC transp 100.0 4.1E-43 1.4E-47 364.3 17.9 184 499-708 4-197 (253)
45 1g29_1 MALK, maltose transport 100.0 3.5E-43 1.2E-47 383.1 18.0 194 499-708 3-208 (372)
46 2zu0_C Probable ATP-dependent 100.0 3.1E-42 1.1E-46 360.5 22.3 197 499-708 20-233 (267)
47 2pjz_A Hypothetical protein ST 100.0 8.4E-43 2.9E-47 363.6 15.6 188 500-708 2-193 (263)
48 3ozx_A RNAse L inhibitor; ATP 100.0 1.5E-34 5.2E-39 329.6 15.5 181 499-708 269-454 (538)
49 3bk7_A ABC transporter ATP-bin 100.0 3.3E-34 1.1E-38 330.8 13.6 180 499-708 357-540 (607)
50 3bk7_A ABC transporter ATP-bin 100.0 1.2E-34 3.9E-39 334.7 9.6 191 499-708 83-296 (607)
51 1yqt_A RNAse L inhibitor; ATP- 100.0 2.3E-34 7.9E-39 328.6 11.6 180 499-708 287-470 (538)
52 2iw3_A Elongation factor 3A; a 100.0 7E-34 2.4E-38 339.2 15.0 184 499-708 671-966 (986)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 1.8E-34 6.2E-39 329.4 8.9 190 500-708 21-226 (538)
54 2v9p_A Replication protein E1; 100.0 2.5E-37 8.5E-42 327.9 -14.4 196 431-677 36-233 (305)
55 3j16_B RLI1P; ribosome recycli 100.0 7.8E-32 2.7E-36 310.7 14.7 180 503-708 350-536 (608)
56 3j16_B RLI1P; ribosome recycli 100.0 4.8E-32 1.7E-36 312.4 10.5 188 504-708 82-289 (608)
57 3ozx_A RNAse L inhibitor; ATP 100.0 5.1E-32 1.8E-36 308.7 6.1 185 503-708 3-205 (538)
58 3ux8_A Excinuclease ABC, A sub 100.0 5.2E-31 1.8E-35 309.0 13.6 181 515-708 31-271 (670)
59 2iw3_A Elongation factor 3A; a 100.0 7.6E-30 2.6E-34 304.6 23.6 176 499-708 435-613 (986)
60 3ux8_A Excinuclease ABC, A sub 100.0 1.4E-30 4.8E-35 305.4 7.8 178 515-708 335-613 (670)
61 4aby_A DNA repair protein RECN 100.0 1E-28 3.5E-33 272.9 15.2 186 516-708 49-363 (415)
62 2npi_A Protein CLP1; CLP1-PCF1 100.0 3.8E-32 1.3E-36 304.1 -16.0 166 499-701 118-299 (460)
63 3pih_A Uvrabc system protein A 100.0 2E-28 6.8E-33 292.1 14.5 178 516-708 598-875 (916)
64 2vf7_A UVRA2, excinuclease ABC 99.9 2E-27 6.9E-32 281.3 12.8 188 498-708 501-800 (842)
65 3b85_A Phosphate starvation-in 99.9 1.4E-29 4.6E-34 255.1 -5.2 150 515-705 13-163 (208)
66 2r6f_A Excinuclease ABC subuni 99.9 4.6E-27 1.6E-31 278.7 10.6 186 499-708 629-915 (972)
67 1e69_A Chromosome segregation 99.9 1.3E-26 4.4E-31 248.4 12.8 182 520-708 17-289 (322)
68 2ygr_A Uvrabc system protein A 99.9 1.6E-26 5.6E-31 274.9 11.5 187 498-708 646-933 (993)
69 1z6g_A Guanylate kinase; struc 99.9 2.8E-29 9.4E-34 254.5 -10.5 167 516-704 11-198 (218)
70 4gp7_A Metallophosphoesterase; 99.9 1.2E-27 4.2E-32 233.1 0.4 147 520-705 1-164 (171)
71 2pt7_A CAG-ALFA; ATPase, prote 99.9 4.6E-29 1.6E-33 268.4 -11.9 203 425-704 61-279 (330)
72 1tq4_A IIGP1, interferon-induc 99.9 2E-26 6.7E-31 253.9 -6.4 164 515-702 36-237 (413)
73 1ye8_A Protein THEP1, hypothet 99.9 2.6E-25 8.9E-30 218.5 2.3 135 530-705 2-148 (178)
74 3aez_A Pantothenate kinase; tr 99.9 5E-27 1.7E-31 250.5 -13.3 166 494-703 38-231 (312)
75 2f1r_A Molybdopterin-guanine d 99.9 2.6E-26 9E-31 224.1 -7.9 134 529-682 3-158 (171)
76 3sop_A Neuronal-specific septi 99.9 8.1E-25 2.8E-29 228.8 -2.5 148 530-704 4-154 (270)
77 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6.9E-22 2.4E-26 215.4 15.5 68 637-708 279-352 (365)
78 2eyu_A Twitching motility prot 99.9 1.5E-25 5.2E-30 233.3 -14.5 182 500-702 6-242 (261)
79 2ewv_A Twitching motility prot 99.9 2.7E-25 9.4E-30 242.7 -15.0 174 516-703 126-354 (372)
80 3b9q_A Chloroplast SRP recepto 99.9 4.5E-24 1.5E-28 226.7 -6.3 154 519-699 91-256 (302)
81 2gza_A Type IV secretion syste 99.9 5.2E-26 1.8E-30 247.5 -23.2 223 420-650 49-300 (361)
82 2dpy_A FLII, flagellum-specifi 99.8 3.1E-23 1.1E-27 230.7 -3.4 170 498-701 130-318 (438)
83 2og2_A Putative signal recogni 99.8 3.3E-23 1.1E-27 224.5 -5.1 154 519-699 148-313 (359)
84 1znw_A Guanylate kinase, GMP k 99.8 7.1E-23 2.4E-27 205.2 -5.4 166 515-708 9-196 (207)
85 1lw7_A Transcriptional regulat 99.8 8.2E-23 2.8E-27 222.6 -7.8 158 517-683 157-341 (365)
86 3asz_A Uridine kinase; cytidin 99.8 1.6E-22 5.4E-27 202.4 -11.2 143 525-700 3-161 (211)
87 1lvg_A Guanylate kinase, GMP k 99.8 1.5E-22 5E-27 201.9 -12.5 140 525-685 1-154 (198)
88 2vf7_A UVRA2, excinuclease ABC 99.8 3E-19 1E-23 211.6 11.1 69 636-708 378-448 (842)
89 2jeo_A Uridine-cytidine kinase 99.8 2.1E-20 7.3E-25 192.1 1.1 149 514-701 11-166 (245)
90 2i3b_A HCR-ntpase, human cance 99.8 6.9E-21 2.4E-25 188.7 -2.6 137 528-700 1-149 (189)
91 2o8b_B DNA mismatch repair pro 99.8 6E-19 2.1E-23 213.8 12.9 158 498-708 749-920 (1022)
92 2obl_A ESCN; ATPase, hydrolase 99.8 1E-19 3.4E-24 196.7 5.3 171 498-701 44-229 (347)
93 1tf7_A KAIC; homohexamer, hexa 99.8 4.7E-21 1.6E-25 218.4 -6.0 161 508-703 20-188 (525)
94 1pui_A ENGB, probable GTP-bind 99.8 2E-20 7E-25 185.9 -2.1 167 500-685 4-198 (210)
95 1ewq_A DNA mismatch repair pro 99.8 5.9E-19 2E-23 208.0 9.3 146 497-705 548-703 (765)
96 1cr0_A DNA primase/helicase; R 99.8 1.4E-19 4.8E-24 190.9 3.3 166 516-700 23-197 (296)
97 4ad8_A DNA repair protein RECN 99.7 2.3E-18 7.9E-23 195.9 12.1 67 637-708 396-465 (517)
98 2o5v_A DNA replication and rep 99.7 4.4E-18 1.5E-22 184.5 13.3 57 637-699 265-330 (359)
99 1odf_A YGR205W, hypothetical 3 99.7 1.2E-20 4.2E-25 199.1 -7.9 129 526-672 29-169 (290)
100 1rj9_A FTSY, signal recognitio 99.7 4.8E-19 1.6E-23 188.1 2.8 151 527-702 101-260 (304)
101 3qkt_A DNA double-strand break 99.7 2.4E-17 8.3E-22 177.6 15.9 68 637-708 248-321 (339)
102 1pzn_A RAD51, DNA repair and r 99.7 7E-19 2.4E-23 190.5 3.1 145 517-704 119-290 (349)
103 1tf7_A KAIC; homohexamer, hexa 99.7 4.7E-19 1.6E-23 202.0 1.6 153 500-700 258-417 (525)
104 2qag_C Septin-7; cell cycle, c 99.7 2.8E-19 9.7E-24 197.5 -0.8 166 498-703 10-180 (418)
105 2qnr_A Septin-2, protein NEDD5 99.7 1.9E-19 6.6E-24 191.0 -2.2 163 503-702 2-169 (301)
106 4a74_A DNA repair and recombin 99.7 1.3E-18 4.5E-23 175.2 2.3 142 524-708 21-192 (231)
107 1w1w_A Structural maintenance 99.7 7.7E-18 2.6E-22 187.2 8.5 68 637-708 333-404 (430)
108 2ehv_A Hypothetical protein PH 99.7 2E-18 6.9E-23 176.1 -0.2 171 500-703 7-185 (251)
109 3szr_A Interferon-induced GTP- 99.7 8.1E-19 2.8E-23 203.1 -4.3 168 499-702 10-198 (608)
110 3jvv_A Twitching mobility prot 99.7 3.2E-17 1.1E-21 177.6 7.0 135 503-703 92-234 (356)
111 3pih_A Uvrabc system protein A 99.7 5E-17 1.7E-21 194.1 6.5 142 542-708 382-533 (916)
112 3thx_A DNA mismatch repair pro 99.6 1.6E-15 5.6E-20 181.9 19.0 148 498-705 630-790 (934)
113 1nij_A Hypothetical protein YJ 99.6 1.8E-18 6.3E-23 184.8 -6.1 159 528-708 4-197 (318)
114 2qag_B Septin-6, protein NEDD5 99.6 5.8E-17 2E-21 178.6 3.5 179 499-699 16-218 (427)
115 3c8u_A Fructokinase; YP_612366 99.6 1.9E-19 6.4E-24 180.4 -15.3 150 525-701 19-184 (208)
116 1nlf_A Regulatory protein REPA 99.6 1.9E-16 6.4E-21 165.7 6.6 151 524-703 26-184 (279)
117 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 7.1E-16 2.4E-20 146.6 9.4 77 628-708 41-130 (148)
118 3thx_B DNA mismatch repair pro 99.6 4.8E-16 1.6E-20 186.0 8.1 157 498-705 639-801 (918)
119 2w0m_A SSO2452; RECA, SSPF, un 99.6 1.3E-16 4.3E-21 160.5 2.4 152 515-700 9-168 (235)
120 1s96_A Guanylate kinase, GMP k 99.6 2E-16 6.7E-21 160.3 1.9 127 522-704 10-144 (219)
121 2cvh_A DNA repair and recombin 99.6 3.9E-15 1.3E-19 148.7 9.1 140 515-701 6-157 (220)
122 1zp6_A Hypothetical protein AT 99.6 3.8E-17 1.3E-21 160.2 -5.8 138 524-684 5-148 (191)
123 2r6f_A Excinuclease ABC subuni 99.6 3.2E-15 1.1E-19 177.7 9.1 131 552-708 432-573 (972)
124 2qm8_A GTPase/ATPase; G protei 99.5 1.2E-17 4.1E-22 180.0 -13.5 178 500-684 30-259 (337)
125 3kta_B Chromosome segregation 99.5 1.2E-14 4.2E-19 141.6 8.8 65 636-704 63-131 (173)
126 2yhs_A FTSY, cell division pro 99.5 7E-16 2.4E-20 172.1 -2.6 147 519-698 284-447 (503)
127 1wb9_A DNA mismatch repair pro 99.5 1.6E-14 5.4E-19 171.3 8.7 152 498-704 576-734 (800)
128 1htw_A HI0065; nucleotide-bind 99.5 1.3E-16 4.6E-21 153.3 -8.7 88 502-598 10-97 (158)
129 2ygr_A Uvrabc system protein A 99.5 1E-13 3.5E-18 165.4 12.6 113 587-708 466-590 (993)
130 2oap_1 GSPE-2, type II secreti 99.5 2.1E-16 7.2E-21 179.0 -10.2 175 515-708 247-458 (511)
131 1sxj_E Activator 1 40 kDa subu 99.5 1.9E-14 6.6E-19 154.6 5.7 140 529-703 37-177 (354)
132 1p9r_A General secretion pathw 99.5 8.1E-17 2.8E-21 177.9 -14.6 143 500-660 144-314 (418)
133 1n0w_A DNA repair protein RAD5 99.5 4.5E-14 1.6E-18 143.1 6.7 138 524-703 20-177 (243)
134 2bbw_A Adenylate kinase 4, AK4 99.4 1.9E-15 6.4E-20 155.1 -5.6 136 527-684 26-197 (246)
135 2rcn_A Probable GTPase ENGC; Y 99.4 1.1E-14 3.9E-19 157.2 -0.7 120 516-652 204-328 (358)
136 3e70_C DPA, signal recognition 99.4 1.8E-13 6.1E-18 146.6 7.2 144 524-701 125-280 (328)
137 2kjq_A DNAA-related protein; s 99.4 3.5E-13 1.2E-17 128.1 7.0 92 517-699 30-124 (149)
138 3lda_A DNA repair protein RAD5 99.3 6.2E-13 2.1E-17 146.1 6.0 135 524-702 174-330 (400)
139 2x8a_A Nuclear valosin-contain 99.3 4.8E-15 1.6E-19 155.1 -11.9 142 515-680 33-190 (274)
140 2yv5_A YJEQ protein; hydrolase 99.3 1.4E-13 4.9E-18 145.8 -0.7 116 523-650 160-300 (302)
141 3ec2_A DNA replication protein 99.3 8.1E-13 2.8E-17 128.5 3.8 111 522-701 32-144 (180)
142 1cke_A CK, MSSA, protein (cyti 99.2 1.1E-13 3.6E-18 139.4 -6.9 127 527-666 4-151 (227)
143 1udx_A The GTP-binding protein 99.2 1.4E-12 4.8E-17 143.8 1.2 153 518-698 147-306 (416)
144 3lnc_A Guanylate kinase, GMP k 99.2 7.3E-14 2.5E-18 141.7 -8.6 166 515-703 14-198 (231)
145 2bdt_A BH3686; alpha-beta prot 99.2 9.1E-14 3.1E-18 136.2 -8.2 146 528-707 2-164 (189)
146 3auy_A DNA double-strand break 99.2 1.9E-11 6.6E-16 133.0 8.5 67 637-708 280-353 (371)
147 1u0l_A Probable GTPase ENGC; p 99.2 3.9E-12 1.3E-16 134.7 2.2 103 523-626 164-289 (301)
148 1sq5_A Pantothenate kinase; P- 99.2 3.2E-13 1.1E-17 143.4 -6.1 138 497-669 35-198 (308)
149 1ls1_A Signal recognition part 99.2 2.4E-11 8.3E-16 128.3 6.5 142 500-697 77-219 (295)
150 1vma_A Cell division protein F 99.1 2.3E-11 7.9E-16 129.0 5.8 98 521-666 97-197 (306)
151 4e22_A Cytidylate kinase; P-lo 99.1 3.2E-12 1.1E-16 131.7 -1.8 99 516-625 18-134 (252)
152 3euj_A Chromosome partition pr 99.1 2.1E-11 7.2E-16 136.4 4.6 64 501-570 8-71 (483)
153 1t9h_A YLOQ, probable GTPase E 99.1 6.4E-12 2.2E-16 133.2 -1.6 96 523-620 168-287 (307)
154 1oix_A RAS-related protein RAB 99.1 1.9E-11 6.6E-16 119.9 0.7 142 530-682 31-188 (191)
155 1iy2_A ATP-dependent metallopr 99.0 3.2E-13 1.1E-17 140.9 -14.6 138 501-665 51-195 (278)
156 1in4_A RUVB, holliday junction 99.0 9.8E-14 3.3E-18 149.0 -19.0 155 500-684 19-193 (334)
157 2ius_A DNA translocase FTSK; n 99.0 5.2E-12 1.8E-16 142.2 -6.4 161 520-701 159-343 (512)
158 2px0_A Flagellar biosynthesis 99.0 8.3E-10 2.9E-14 116.5 10.5 129 526-707 103-233 (296)
159 3tr0_A Guanylate kinase, GMP k 99.0 6.1E-11 2.1E-15 117.0 1.6 71 522-596 1-72 (205)
160 1ixz_A ATP-dependent metallopr 99.0 4.4E-13 1.5E-17 137.7 -15.2 140 500-666 26-172 (254)
161 3a00_A Guanylate kinase, GMP k 99.0 1E-10 3.4E-15 114.6 1.9 78 528-615 1-91 (186)
162 3ney_A 55 kDa erythrocyte memb 99.0 8.6E-11 2.9E-15 116.7 1.2 83 522-614 13-108 (197)
163 1qhl_A Protein (cell division 98.9 2.6E-11 8.7E-16 123.2 -4.1 75 499-584 9-91 (227)
164 1kgd_A CASK, peripheral plasma 98.9 1.6E-10 5.5E-15 112.6 0.4 81 526-614 3-94 (180)
165 2qt1_A Nicotinamide riboside k 98.9 4.3E-10 1.5E-14 111.6 2.3 106 521-665 14-119 (207)
166 2f9l_A RAB11B, member RAS onco 98.8 1E-09 3.4E-14 108.0 3.9 139 530-682 7-164 (199)
167 2dr3_A UPF0273 protein PH0284; 98.8 1.4E-09 4.8E-14 110.0 4.0 157 516-702 10-175 (247)
168 3k1j_A LON protease, ATP-depen 98.8 1.2E-10 4E-15 134.9 -4.7 157 515-682 47-227 (604)
169 2dy1_A Elongation factor G; tr 98.8 2E-09 7E-14 125.7 5.2 133 522-702 3-138 (665)
170 1svm_A Large T antigen; AAA+ f 98.8 5.3E-11 1.8E-15 129.6 -7.7 137 515-666 156-312 (377)
171 2zr9_A Protein RECA, recombina 98.7 2.5E-08 8.4E-13 107.7 8.7 124 524-701 57-199 (349)
172 2j41_A Guanylate kinase; GMP, 98.7 2.9E-09 1E-13 104.9 0.5 62 523-587 1-62 (207)
173 3t34_A Dynamin-related protein 98.6 1.5E-08 5.2E-13 109.6 4.8 161 515-698 24-212 (360)
174 2r6a_A DNAB helicase, replicat 98.6 4.5E-09 1.5E-13 117.4 0.2 155 516-698 191-362 (454)
175 2ce7_A Cell division protein F 98.6 5.4E-08 1.9E-12 109.0 8.4 119 515-703 38-167 (476)
176 3cr8_A Sulfate adenylyltranfer 98.6 3.2E-09 1.1E-13 121.0 -1.8 72 523-599 364-447 (552)
177 3nwj_A ATSK2; P loop, shikimat 98.6 4.6E-09 1.6E-13 108.2 -0.7 52 499-552 17-72 (250)
178 3uie_A Adenylyl-sulfate kinase 98.6 1.5E-09 5.3E-14 107.3 -4.2 61 503-567 3-65 (200)
179 3kta_A Chromosome segregation 98.6 1E-08 3.6E-13 99.2 0.8 66 519-585 18-89 (182)
180 4eun_A Thermoresistant glucoki 98.5 9.5E-09 3.3E-13 101.6 -0.3 71 522-597 23-94 (200)
181 3tau_A Guanylate kinase, GMP k 98.5 1.4E-08 4.7E-13 101.2 0.7 71 526-600 6-87 (208)
182 2qtf_A Protein HFLX, GTP-bindi 98.5 6.1E-08 2.1E-12 105.2 4.8 141 530-683 181-351 (364)
183 2dhr_A FTSH; AAA+ protein, hex 98.5 3.4E-09 1.1E-13 119.5 -5.9 139 501-666 42-187 (499)
184 1zu4_A FTSY; GTPase, signal re 98.5 3.2E-08 1.1E-12 105.5 1.9 68 517-584 94-171 (320)
185 3vaa_A Shikimate kinase, SK; s 98.5 6.8E-08 2.3E-12 95.3 3.6 45 508-552 5-49 (199)
186 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 3E-09 1E-13 116.4 -8.0 153 524-707 16-189 (392)
187 3ice_A Transcription terminati 98.3 5.8E-08 2E-12 104.9 -0.0 55 496-552 130-198 (422)
188 2xau_A PRE-mRNA-splicing facto 98.3 4.7E-07 1.6E-11 107.5 7.5 68 637-707 190-259 (773)
189 2vp4_A Deoxynucleoside kinase; 98.3 2.3E-08 7.8E-13 101.2 -3.5 64 522-589 14-87 (230)
190 3hr8_A Protein RECA; alpha and 98.3 1.5E-06 5.2E-11 93.7 9.9 58 524-584 57-115 (356)
191 2z43_A DNA repair and recombin 98.2 8.4E-07 2.9E-11 94.5 4.3 132 524-701 103-259 (324)
192 4a1f_A DNAB helicase, replicat 98.1 2E-06 7E-11 92.1 6.7 125 517-697 35-163 (338)
193 3tqc_A Pantothenate kinase; bi 98.1 7.6E-07 2.6E-11 94.8 2.8 135 504-670 65-211 (321)
194 1rz3_A Hypothetical protein rb 98.1 6.5E-07 2.2E-11 88.5 1.8 48 524-571 18-65 (201)
195 2e87_A Hypothetical protein PH 98.1 3.4E-06 1.2E-10 91.0 7.6 123 529-701 168-293 (357)
196 1knq_A Gluconate kinase; ALFA/ 98.1 7E-07 2.4E-11 85.7 1.3 53 526-584 6-59 (175)
197 2ffh_A Protein (FFH); SRP54, s 98.0 3.4E-06 1.2E-10 93.1 5.6 162 500-698 77-246 (425)
198 1ega_A Protein (GTP-binding pr 98.0 4.7E-06 1.6E-10 87.8 5.0 146 527-704 7-163 (301)
199 1v5w_A DMC1, meiotic recombina 98.0 2.6E-06 9E-11 91.5 3.1 28 524-551 118-145 (343)
200 1fnn_A CDC6P, cell division co 97.9 2.8E-05 9.6E-10 83.5 10.9 47 654-701 124-170 (389)
201 3kl4_A SRP54, signal recogniti 97.9 4.4E-05 1.5E-09 84.3 11.7 41 527-567 96-136 (433)
202 2pez_A Bifunctional 3'-phospho 97.9 1.3E-06 4.6E-11 84.2 -1.0 41 526-567 3-45 (179)
203 3b9p_A CG5977-PA, isoform A; A 97.8 5.6E-05 1.9E-09 78.6 10.8 32 639-670 97-128 (297)
204 1lv7_A FTSH; alpha/beta domain 97.8 7.6E-05 2.6E-09 76.1 11.3 45 517-565 36-80 (257)
205 1ypw_A Transitional endoplasmi 97.8 4.6E-06 1.6E-10 99.4 2.2 32 523-554 233-264 (806)
206 1jjv_A Dephospho-COA kinase; P 97.8 3.3E-06 1.1E-10 83.2 0.2 114 530-703 4-118 (206)
207 2qby_A CDC6 homolog 1, cell di 97.8 1E-05 3.5E-10 86.5 3.9 31 526-556 43-73 (386)
208 2z4s_A Chromosomal replication 97.8 2.2E-05 7.4E-10 87.2 6.5 45 653-700 191-237 (440)
209 3m6a_A ATP-dependent protease 97.8 4.4E-06 1.5E-10 95.3 0.7 81 502-586 86-166 (543)
210 1f6b_A SAR1; gtpases, N-termin 97.8 6.9E-06 2.4E-10 80.4 1.9 60 505-567 5-72 (198)
211 1mky_A Probable GTP-binding pr 97.7 1.3E-05 4.3E-10 89.0 3.9 61 529-589 181-253 (439)
212 3bh0_A DNAB-like replicative h 97.7 1.3E-05 4.6E-10 84.9 3.9 129 516-697 56-188 (315)
213 3k8u_A Putative ABC transporte 97.7 2.7E-06 9.3E-11 80.7 -2.1 49 96-148 94-144 (156)
214 1kag_A SKI, shikimate kinase I 97.7 1.5E-05 5.1E-10 75.9 2.7 33 527-563 3-35 (173)
215 1m7g_A Adenylylsulfate kinase; 97.6 6.1E-06 2.1E-10 81.9 -0.3 44 523-566 20-65 (211)
216 1l8q_A Chromosomal replication 97.6 5.3E-05 1.8E-09 80.1 6.9 29 527-555 36-64 (324)
217 3r20_A Cytidylate kinase; stru 97.6 3.7E-06 1.3E-10 85.4 -2.0 70 528-597 9-96 (233)
218 3lxx_A GTPase IMAP family memb 97.6 0.00032 1.1E-08 70.6 12.3 29 530-558 31-59 (239)
219 2p67_A LAO/AO transport system 97.6 8.3E-06 2.8E-10 87.5 -0.1 54 515-568 43-96 (341)
220 4eaq_A DTMP kinase, thymidylat 97.6 1.6E-05 5.3E-10 80.5 1.9 45 518-563 13-60 (229)
221 2qor_A Guanylate kinase; phosp 97.6 1E-05 3.4E-10 79.9 -0.1 54 524-577 8-72 (204)
222 2eyu_A Twitching motility prot 97.5 6.7E-05 2.3E-09 77.4 5.7 48 645-702 88-135 (261)
223 3b79_A Toxin secretion ATP-bin 97.5 8E-06 2.7E-10 74.6 -1.5 47 96-146 78-128 (129)
224 3llm_A ATP-dependent RNA helic 97.5 6.4E-05 2.2E-09 75.8 4.6 122 524-682 72-204 (235)
225 2jaq_A Deoxyguanosine kinase; 97.5 5E-06 1.7E-10 81.1 -3.9 70 530-599 2-87 (205)
226 1m2o_B GTP-binding protein SAR 97.4 8.3E-05 2.8E-09 72.1 4.6 51 516-567 12-70 (190)
227 2www_A Methylmalonic aciduria 97.4 3.1E-05 1.1E-09 83.4 1.6 43 526-568 72-114 (349)
228 2gj8_A MNME, tRNA modification 97.4 8.4E-05 2.9E-09 70.9 4.5 27 526-552 2-28 (172)
229 3cf0_A Transitional endoplasmi 97.4 0.00025 8.5E-09 74.4 8.1 38 523-562 44-81 (301)
230 3zua_A CLD, alpha-hemolysin tr 97.4 2.2E-05 7.5E-10 73.2 -0.7 48 96-148 86-136 (142)
231 3bos_A Putative DNA replicatio 97.3 8.2E-05 2.8E-09 74.0 3.3 28 527-554 51-78 (242)
232 1u94_A RECA protein, recombina 97.3 0.00044 1.5E-08 74.5 9.0 48 516-564 49-100 (356)
233 1uf9_A TT1252 protein; P-loop, 97.3 2.5E-05 8.6E-10 76.2 -1.1 33 528-565 8-40 (203)
234 1sxj_C Activator 1 40 kDa subu 97.3 1.2E-05 4E-10 85.9 -4.0 70 515-584 31-103 (340)
235 3h4m_A Proteasome-activating n 97.3 0.00054 1.8E-08 70.6 8.4 28 525-552 48-75 (285)
236 1j8m_F SRP54, signal recogniti 97.2 4.6E-05 1.6E-09 80.2 -0.0 63 501-569 76-139 (297)
237 2i1q_A DNA repair and recombin 97.2 0.00016 5.4E-09 76.5 3.7 27 524-550 94-120 (322)
238 2w58_A DNAI, primosome compone 97.2 0.00027 9.2E-09 69.1 5.1 28 529-556 55-82 (202)
239 1sxj_D Activator 1 41 kDa subu 97.2 7.7E-05 2.6E-09 79.1 0.9 38 516-553 44-83 (353)
240 1y63_A LMAJ004144AAA protein; 97.1 0.00019 6.5E-09 69.5 3.3 32 520-551 2-33 (184)
241 2yvu_A Probable adenylyl-sulfa 97.1 0.00013 4.4E-09 70.6 1.9 40 524-563 9-49 (186)
242 4fcw_A Chaperone protein CLPB; 97.1 0.00032 1.1E-08 73.1 5.0 32 528-559 47-78 (311)
243 3uk6_A RUVB-like 2; hexameric 97.1 0.00048 1.6E-08 73.6 6.5 40 526-565 68-107 (368)
244 2q6t_A DNAB replication FORK h 97.1 0.00039 1.3E-08 77.1 5.7 38 516-553 188-225 (444)
245 1njg_A DNA polymerase III subu 97.1 9.2E-05 3.1E-09 73.0 0.4 44 654-702 125-168 (250)
246 3lxw_A GTPase IMAP family memb 97.0 0.00068 2.3E-08 69.0 6.6 63 639-702 86-151 (247)
247 2qag_A Septin-2, protein NEDD5 97.0 5.3E-05 1.8E-09 81.9 -1.8 59 497-564 15-73 (361)
248 2wji_A Ferrous iron transport 97.0 0.00058 2E-08 64.3 5.2 25 529-553 4-28 (165)
249 3t61_A Gluconokinase; PSI-biol 97.0 0.00016 5.4E-09 70.9 1.2 35 528-566 18-52 (202)
250 2p5t_B PEZT; postsegregational 97.0 0.00017 5.7E-09 73.7 1.3 42 524-567 28-69 (253)
251 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.0033 1.1E-07 63.5 11.0 27 526-552 37-63 (262)
252 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00043 1.5E-08 65.0 3.9 29 520-549 16-44 (149)
253 1ex7_A Guanylate kinase; subst 97.0 0.0002 6.9E-09 70.1 1.6 74 531-614 4-90 (186)
254 2wjg_A FEOB, ferrous iron tran 96.9 0.00043 1.5E-08 66.1 3.8 22 530-551 9-30 (188)
255 1np6_A Molybdopterin-guanine d 96.9 0.00029 1E-08 68.2 2.6 39 528-566 6-47 (174)
256 2ohf_A Protein OLA1, GTP-bindi 96.9 0.00037 1.3E-08 76.0 3.6 41 524-564 18-69 (396)
257 4dcu_A GTP-binding protein ENG 96.9 0.00071 2.4E-08 75.2 5.6 56 640-702 87-143 (456)
258 3d8b_A Fidgetin-like protein 1 96.9 0.0027 9.2E-08 68.2 9.9 27 526-552 115-141 (357)
259 2v1u_A Cell division control p 96.9 0.0004 1.4E-08 74.2 3.3 29 526-554 42-70 (387)
260 2zej_A Dardarin, leucine-rich 96.8 0.0005 1.7E-08 65.9 3.4 26 530-555 4-29 (184)
261 2if2_A Dephospho-COA kinase; a 96.8 0.00057 1.9E-08 66.8 3.7 21 530-550 3-23 (204)
262 1ly1_A Polynucleotide kinase; 96.8 0.0027 9.3E-08 60.1 8.3 31 529-562 3-33 (181)
263 3n70_A Transport activator; si 96.8 0.0024 8.2E-08 59.2 7.7 32 526-557 22-53 (145)
264 1xp8_A RECA protein, recombina 96.8 0.004 1.4E-07 67.3 10.2 27 524-550 70-96 (366)
265 3ihw_A Centg3; RAS, centaurin, 96.7 0.0013 4.3E-08 63.3 5.2 37 530-566 22-67 (184)
266 4ag6_A VIRB4 ATPase, type IV s 96.7 0.00069 2.4E-08 73.6 3.4 48 654-704 261-311 (392)
267 1gtv_A TMK, thymidylate kinase 96.7 0.00029 9.9E-09 69.2 -0.0 87 530-636 2-95 (214)
268 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.01 3.5E-07 62.7 11.8 28 525-552 42-69 (322)
269 1qhx_A CPT, protein (chloramph 96.6 0.0011 3.7E-08 63.1 3.7 27 527-553 2-28 (178)
270 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00038 1.3E-08 74.7 0.4 37 516-552 10-48 (359)
271 3cm0_A Adenylate kinase; ATP-b 96.5 0.00099 3.4E-08 63.9 3.0 27 526-552 2-28 (186)
272 2dby_A GTP-binding protein; GD 96.5 0.00054 1.8E-08 74.2 1.1 59 530-620 3-61 (368)
273 3kb2_A SPBC2 prophage-derived 96.5 0.0013 4.5E-08 61.9 3.4 24 530-553 3-26 (173)
274 1fzq_A ADP-ribosylation factor 96.5 0.0014 4.6E-08 62.8 3.3 38 529-566 17-62 (181)
275 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0035 1.2E-07 66.4 6.5 28 523-550 118-145 (331)
276 1ko7_A HPR kinase/phosphatase; 96.4 0.0014 4.9E-08 69.1 3.4 47 516-563 133-183 (314)
277 1kht_A Adenylate kinase; phosp 96.4 0.0017 5.8E-08 62.2 3.6 27 527-553 2-28 (192)
278 3trf_A Shikimate kinase, SK; a 96.4 0.0017 5.8E-08 62.2 3.5 26 527-552 4-29 (185)
279 2chg_A Replication factor C sm 96.4 0.0059 2E-07 59.1 7.5 43 654-701 101-143 (226)
280 1vht_A Dephospho-COA kinase; s 96.4 0.0019 6.6E-08 63.8 4.0 32 527-563 3-34 (218)
281 1q3t_A Cytidylate kinase; nucl 96.3 0.0018 6.2E-08 65.1 3.6 35 525-559 13-50 (236)
282 3t15_A Ribulose bisphosphate c 96.3 0.0063 2.2E-07 63.4 7.8 27 526-552 34-60 (293)
283 3qks_A DNA double-strand break 96.3 0.0021 7.1E-08 63.5 3.9 29 520-549 16-44 (203)
284 2v54_A DTMP kinase, thymidylat 96.3 0.0022 7.5E-08 62.3 3.9 27 526-552 2-28 (204)
285 2rhm_A Putative kinase; P-loop 96.3 0.0018 6.3E-08 62.2 3.3 27 526-552 3-29 (193)
286 1gvn_B Zeta; postsegregational 96.3 0.002 7E-08 67.1 3.7 36 526-563 31-66 (287)
287 3iij_A Coilin-interacting nucl 96.2 0.0015 5.1E-08 62.5 2.1 27 526-552 9-35 (180)
288 1xjc_A MOBB protein homolog; s 96.2 0.0015 5.1E-08 62.9 2.0 36 529-564 5-43 (169)
289 3lw7_A Adenylate kinase relate 96.2 0.0022 7.6E-08 60.0 3.2 19 530-548 3-21 (179)
290 1d2n_A N-ethylmaleimide-sensit 96.2 0.0074 2.5E-07 61.7 7.2 26 526-551 62-87 (272)
291 1jal_A YCHF protein; nucleotid 96.1 0.0038 1.3E-07 67.3 4.9 36 528-563 2-48 (363)
292 2c95_A Adenylate kinase 1; tra 96.1 0.0029 9.9E-08 60.9 3.6 27 526-552 7-33 (196)
293 3dm5_A SRP54, signal recogniti 96.1 0.027 9.3E-07 62.2 11.7 35 527-561 99-133 (443)
294 2wwf_A Thymidilate kinase, put 96.1 0.003 1E-07 61.7 3.7 28 525-552 7-34 (212)
295 2plr_A DTMP kinase, probable t 96.1 0.0032 1.1E-07 61.3 3.6 32 527-559 3-34 (213)
296 1nn5_A Similar to deoxythymidy 96.0 0.0033 1.1E-07 61.5 3.6 28 525-552 6-33 (215)
297 2qp9_X Vacuolar protein sortin 96.0 0.0098 3.4E-07 63.7 7.2 28 525-552 81-108 (355)
298 3syl_A Protein CBBX; photosynt 95.9 0.042 1.4E-06 56.8 11.8 26 527-552 66-91 (309)
299 3co5_A Putative two-component 95.9 0.0091 3.1E-07 55.1 6.0 28 526-553 25-52 (143)
300 2fn4_A P23, RAS-related protei 95.9 0.0073 2.5E-07 56.6 5.2 22 530-551 11-32 (181)
301 1via_A Shikimate kinase; struc 95.9 0.0036 1.2E-07 59.6 3.0 23 530-552 6-28 (175)
302 3cbq_A GTP-binding protein REM 95.9 0.0036 1.2E-07 60.7 3.0 36 530-565 25-71 (195)
303 2lkc_A Translation initiation 95.9 0.0081 2.8E-07 56.3 5.4 26 526-551 6-31 (178)
304 1nks_A Adenylate kinase; therm 95.8 0.0043 1.5E-07 59.4 3.2 24 530-553 3-26 (194)
305 2nzj_A GTP-binding protein REM 95.8 0.0072 2.5E-07 56.4 4.7 23 530-552 6-28 (175)
306 2bwj_A Adenylate kinase 5; pho 95.8 0.0037 1.3E-07 60.3 2.8 29 524-552 8-36 (199)
307 3cmw_A Protein RECA, recombina 95.8 0.019 6.4E-07 72.9 9.7 41 524-564 728-769 (1706)
308 3io5_A Recombination and repai 95.8 0.016 5.3E-07 61.3 7.5 39 525-564 26-67 (333)
309 2ze6_A Isopentenyl transferase 95.8 0.0041 1.4E-07 63.4 3.1 23 530-552 3-25 (253)
310 2erx_A GTP-binding protein DI- 95.7 0.0083 2.9E-07 55.6 4.8 21 530-550 5-25 (172)
311 2zan_A Vacuolar protein sortin 95.7 0.026 9E-07 62.3 9.6 28 525-552 164-191 (444)
312 3bgw_A DNAB-like replicative h 95.7 0.0053 1.8E-07 68.0 3.9 34 517-550 186-219 (444)
313 4a82_A Cystic fibrosis transme 95.7 1.2 4.2E-05 50.6 23.6 10 518-527 342-351 (578)
314 2vli_A Antibiotic resistance p 95.7 0.0039 1.3E-07 59.4 2.4 27 526-552 3-29 (183)
315 1tev_A UMP-CMP kinase; ploop, 95.7 0.0054 1.9E-07 58.7 3.4 26 527-552 2-27 (196)
316 3zvl_A Bifunctional polynucleo 95.6 0.037 1.3E-06 60.6 10.2 28 525-552 255-282 (416)
317 2z0h_A DTMP kinase, thymidylat 95.6 0.0058 2E-07 58.8 3.3 24 530-553 2-25 (197)
318 3ake_A Cytidylate kinase; CMP 95.6 0.0056 1.9E-07 59.5 3.2 23 530-552 4-26 (208)
319 3vfd_A Spastin; ATPase, microt 95.6 0.04 1.4E-06 59.5 10.2 27 526-552 146-172 (389)
320 2ew1_A RAS-related protein RAB 95.6 0.011 3.8E-07 57.7 5.2 21 530-550 28-48 (201)
321 2oil_A CATX-8, RAS-related pro 95.5 0.012 4.1E-07 56.3 5.3 21 530-550 27-47 (193)
322 3fb4_A Adenylate kinase; psych 95.5 0.0062 2.1E-07 59.9 3.3 23 530-552 2-24 (216)
323 1aky_A Adenylate kinase; ATP:A 95.5 0.0073 2.5E-07 59.7 3.7 27 526-552 2-28 (220)
324 3qf4_A ABC transporter, ATP-bi 95.5 4.5 0.00016 46.0 30.5 10 502-511 359-368 (587)
325 1zuh_A Shikimate kinase; alpha 95.5 0.0072 2.5E-07 56.9 3.4 25 528-552 7-31 (168)
326 1z0j_A RAB-22, RAS-related pro 95.5 0.0096 3.3E-07 55.1 4.2 23 530-552 8-30 (170)
327 3iby_A Ferrous iron transport 95.5 0.0074 2.5E-07 61.7 3.7 23 530-552 3-25 (256)
328 1z2a_A RAS-related protein RAB 95.5 0.0069 2.4E-07 56.0 3.2 22 530-551 7-28 (168)
329 3q72_A GTP-binding protein RAD 95.5 0.0063 2.2E-07 56.4 2.9 24 530-553 4-27 (166)
330 3hu3_A Transitional endoplasmi 95.5 0.019 6.6E-07 64.3 7.3 28 525-552 235-262 (489)
331 1a7j_A Phosphoribulokinase; tr 95.5 0.004 1.4E-07 65.0 1.6 26 527-552 4-29 (290)
332 1zd8_A GTP:AMP phosphotransfer 95.5 0.0073 2.5E-07 60.1 3.5 27 526-552 5-31 (227)
333 2pt5_A Shikimate kinase, SK; a 95.4 0.0076 2.6E-07 56.5 3.3 23 530-552 2-24 (168)
334 2cdn_A Adenylate kinase; phosp 95.4 0.0084 2.9E-07 58.3 3.7 26 527-552 19-44 (201)
335 1ksh_A ARF-like protein 2; sma 95.4 0.014 4.9E-07 55.3 5.3 40 526-565 16-63 (186)
336 1e6c_A Shikimate kinase; phosp 95.4 0.0067 2.3E-07 57.1 2.9 24 529-552 3-26 (173)
337 3dl0_A Adenylate kinase; phosp 95.4 0.0075 2.6E-07 59.3 3.3 23 530-552 2-24 (216)
338 2iyv_A Shikimate kinase, SK; t 95.4 0.0065 2.2E-07 58.1 2.7 24 529-552 3-26 (184)
339 1zak_A Adenylate kinase; ATP:A 95.4 0.0069 2.4E-07 60.0 3.0 26 527-552 4-29 (222)
340 3k53_A Ferrous iron transport 95.4 0.0074 2.5E-07 61.9 3.3 24 530-553 5-28 (271)
341 1ukz_A Uridylate kinase; trans 95.4 0.0084 2.9E-07 58.3 3.5 26 527-552 14-39 (203)
342 2ged_A SR-beta, signal recogni 95.4 0.0078 2.7E-07 57.5 3.2 25 529-553 49-73 (193)
343 1kao_A RAP2A; GTP-binding prot 95.4 0.0081 2.8E-07 55.3 3.2 21 530-550 5-25 (167)
344 3q85_A GTP-binding protein REM 95.4 0.0088 3E-07 55.6 3.5 23 530-552 4-26 (169)
345 2ce2_X GTPase HRAS; signaling 95.3 0.0079 2.7E-07 55.2 3.1 22 530-551 5-26 (166)
346 2pbr_A DTMP kinase, thymidylat 95.3 0.0083 2.8E-07 57.4 3.3 23 530-552 2-24 (195)
347 1hqc_A RUVB; extended AAA-ATPa 95.3 0.038 1.3E-06 57.5 8.7 26 527-552 37-62 (324)
348 4b4t_J 26S protease regulatory 95.3 0.023 8E-07 61.9 7.1 30 524-553 178-207 (405)
349 1u8z_A RAS-related protein RAL 95.3 0.0085 2.9E-07 55.2 3.2 22 530-551 6-27 (168)
350 2bcg_Y Protein YP2, GTP-bindin 95.3 0.015 5.3E-07 56.2 5.2 35 530-564 10-55 (206)
351 2dyk_A GTP-binding protein; GT 95.3 0.0088 3E-07 55.0 3.2 23 530-552 3-25 (161)
352 3clv_A RAB5 protein, putative; 95.3 0.011 3.8E-07 56.3 4.0 22 530-551 9-30 (208)
353 3u61_B DNA polymerase accessor 95.3 0.046 1.6E-06 57.1 9.1 43 655-702 105-148 (324)
354 1qf9_A UMP/CMP kinase, protein 95.3 0.0087 3E-07 57.1 3.2 25 528-552 6-30 (194)
355 1z08_A RAS-related protein RAB 95.2 0.0091 3.1E-07 55.4 3.2 22 530-551 8-29 (170)
356 1g16_A RAS-related protein SEC 95.2 0.0087 3E-07 55.5 3.1 22 530-551 5-26 (170)
357 2grj_A Dephospho-COA kinase; T 95.2 0.0091 3.1E-07 58.4 3.3 24 529-552 13-36 (192)
358 1uj2_A Uridine-cytidine kinase 95.2 0.0087 3E-07 60.7 3.3 23 530-552 24-46 (252)
359 1c1y_A RAS-related protein RAP 95.2 0.0092 3.1E-07 55.1 3.2 21 530-550 5-25 (167)
360 1m7b_A RND3/RHOE small GTP-bin 95.2 0.014 4.7E-07 55.6 4.5 29 530-558 9-42 (184)
361 1ky3_A GTP-binding protein YPT 95.2 0.0094 3.2E-07 55.9 3.2 22 530-551 10-31 (182)
362 3t1o_A Gliding protein MGLA; G 95.2 0.0092 3.1E-07 56.8 3.2 25 530-554 16-40 (198)
363 1ek0_A Protein (GTP-binding pr 95.2 0.0095 3.2E-07 55.1 3.2 22 530-551 5-26 (170)
364 1wms_A RAB-9, RAB9, RAS-relate 95.2 0.0095 3.3E-07 55.8 3.2 22 530-551 9-30 (177)
365 3tlx_A Adenylate kinase 2; str 95.1 0.011 3.6E-07 59.9 3.5 26 527-552 28-53 (243)
366 1jr3_A DNA polymerase III subu 95.1 0.029 9.8E-07 59.6 7.1 37 519-555 26-65 (373)
367 3tw8_B RAS-related protein RAB 95.1 0.0097 3.3E-07 55.7 3.0 22 530-551 11-32 (181)
368 3t5d_A Septin-7; GTP-binding p 95.1 0.0089 3.1E-07 61.5 3.0 23 530-552 10-32 (274)
369 3a8t_A Adenylate isopentenyltr 95.1 0.014 4.9E-07 62.1 4.5 28 526-553 38-65 (339)
370 3pqc_A Probable GTP-binding pr 95.1 0.0098 3.4E-07 56.5 3.0 23 530-552 25-47 (195)
371 1svi_A GTP-binding protein YSX 95.1 0.0099 3.4E-07 56.8 3.0 24 528-551 23-46 (195)
372 1lw7_A Transcriptional regulat 95.1 0.0039 1.3E-07 67.1 0.0 61 637-699 258-328 (365)
373 4b4t_K 26S protease regulatory 95.1 0.11 3.7E-06 57.1 11.6 29 524-552 202-230 (428)
374 1r2q_A RAS-related protein RAB 95.0 0.011 3.8E-07 54.6 3.2 21 530-550 8-28 (170)
375 4dsu_A GTPase KRAS, isoform 2B 95.0 0.012 4E-07 55.7 3.2 22 530-551 6-27 (189)
376 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.012 4.1E-07 60.1 3.5 27 526-552 2-28 (260)
377 3bc1_A RAS-related protein RAB 95.0 0.012 4E-07 55.8 3.2 21 530-550 13-33 (195)
378 1r8s_A ADP-ribosylation factor 95.0 0.012 4.1E-07 54.3 3.2 21 530-550 2-22 (164)
379 3b1v_A Ferrous iron uptake tra 95.0 0.015 5.1E-07 60.1 4.1 23 530-552 5-27 (272)
380 2cxx_A Probable GTP-binding pr 95.0 0.011 3.9E-07 55.9 3.0 23 530-552 3-25 (190)
381 2iut_A DNA translocase FTSK; n 95.0 0.11 3.8E-06 58.9 11.5 40 521-560 207-250 (574)
382 2hxs_A RAB-26, RAS-related pro 94.9 0.013 4.6E-07 54.8 3.4 22 530-551 8-29 (178)
383 2y8e_A RAB-protein 6, GH09086P 94.9 0.012 4.1E-07 55.0 3.1 21 530-550 16-36 (179)
384 2f6r_A COA synthase, bifunctio 94.9 0.013 4.3E-07 60.8 3.4 23 528-550 75-97 (281)
385 1upt_A ARL1, ADP-ribosylation 94.9 0.013 4.5E-07 54.4 3.2 30 528-557 7-40 (171)
386 2g6b_A RAS-related protein RAB 94.9 0.013 4.4E-07 55.0 3.2 22 530-551 12-33 (180)
387 3t5g_A GTP-binding protein RHE 94.9 0.021 7.3E-07 53.7 4.7 28 530-557 8-40 (181)
388 2gf0_A GTP-binding protein DI- 94.9 0.021 7.1E-07 54.6 4.6 21 530-550 10-30 (199)
389 4b4t_L 26S protease subunit RP 94.9 0.056 1.9E-06 59.6 8.6 30 524-553 211-240 (437)
390 2g3y_A GTP-binding protein GEM 94.8 0.025 8.7E-07 55.9 5.3 23 530-552 39-61 (211)
391 2fv8_A H6, RHO-related GTP-bin 94.8 0.007 2.4E-07 59.0 1.1 34 518-551 15-48 (207)
392 1z0f_A RAB14, member RAS oncog 94.8 0.014 4.9E-07 54.4 3.2 22 530-551 17-38 (179)
393 4bas_A ADP-ribosylation factor 94.8 0.018 6.2E-07 55.0 3.9 29 529-557 18-52 (199)
394 1gwn_A RHO-related GTP-binding 94.8 0.021 7.3E-07 55.8 4.5 29 530-558 30-63 (205)
395 2efe_B Small GTP-binding prote 94.8 0.015 5.1E-07 54.6 3.2 22 530-551 14-35 (181)
396 1iqp_A RFCS; clamp loader, ext 94.7 0.028 9.6E-07 58.3 5.6 23 530-552 48-70 (327)
397 2a9k_A RAS-related protein RAL 94.7 0.015 5E-07 54.8 3.2 22 530-551 20-41 (187)
398 3con_A GTPase NRAS; structural 94.7 0.015 5.1E-07 55.3 3.2 22 530-551 23-44 (190)
399 3be4_A Adenylate kinase; malar 94.7 0.016 5.4E-07 57.3 3.4 26 527-552 4-29 (217)
400 1sxj_B Activator 1 37 kDa subu 94.7 0.033 1.1E-06 57.6 6.0 22 531-552 45-66 (323)
401 1sky_E F1-ATPase, F1-ATP synth 94.7 0.0071 2.4E-07 67.1 0.9 44 517-561 141-184 (473)
402 3auy_A DNA double-strand break 94.7 0.019 6.5E-07 61.8 4.2 31 518-549 16-46 (371)
403 1ypw_A Transitional endoplasmi 94.7 0.0015 5.1E-08 77.9 -4.9 46 521-568 504-549 (806)
404 1jbk_A CLPB protein; beta barr 94.7 0.018 6E-07 54.2 3.5 28 526-553 41-68 (195)
405 2bme_A RAB4A, RAS-related prot 94.7 0.016 5.3E-07 54.9 3.1 22 530-551 12-33 (186)
406 1e4v_A Adenylate kinase; trans 94.6 0.016 5.4E-07 57.0 3.2 23 530-552 2-24 (214)
407 2qmh_A HPR kinase/phosphorylas 94.6 0.022 7.5E-07 56.2 4.0 35 516-551 23-57 (205)
408 1moz_A ARL1, ADP-ribosylation 94.6 0.011 3.8E-07 55.7 1.9 24 527-550 17-40 (183)
409 3reg_A RHO-like small GTPase; 94.6 0.026 8.8E-07 54.0 4.6 22 530-551 25-46 (194)
410 2gf9_A RAS-related protein RAB 94.6 0.017 5.7E-07 55.1 3.2 22 530-551 24-45 (189)
411 2cjw_A GTP-binding protein GEM 94.6 0.017 5.7E-07 55.8 3.2 21 530-550 8-28 (192)
412 3kkq_A RAS-related protein M-R 94.6 0.017 5.8E-07 54.5 3.2 21 530-550 20-40 (183)
413 1vg8_A RAS-related protein RAB 94.6 0.017 5.9E-07 55.7 3.2 22 530-551 10-31 (207)
414 4dhe_A Probable GTP-binding pr 94.6 0.011 3.6E-07 58.1 1.7 24 529-552 30-53 (223)
415 2fg5_A RAB-22B, RAS-related pr 94.6 0.017 5.8E-07 55.4 3.1 28 530-557 25-57 (192)
416 2xtp_A GTPase IMAP family memb 94.6 0.017 5.8E-07 58.5 3.3 23 530-552 24-46 (260)
417 2h92_A Cytidylate kinase; ross 94.6 0.013 4.6E-07 57.5 2.4 25 528-552 3-27 (219)
418 2bov_A RAla, RAS-related prote 94.6 0.017 5.9E-07 55.5 3.2 22 530-551 16-37 (206)
419 3llu_A RAS-related GTP-binding 94.5 0.018 6.1E-07 55.5 3.2 24 530-553 22-45 (196)
420 1wf3_A GTP-binding protein; GT 94.5 0.017 5.9E-07 60.4 3.3 22 530-551 9-30 (301)
421 1a5t_A Delta prime, HOLB; zinc 94.5 0.079 2.7E-06 56.0 8.5 36 519-554 12-50 (334)
422 1z06_A RAS-related protein RAB 94.5 0.019 6.3E-07 54.8 3.2 21 530-550 22-42 (189)
423 3v9p_A DTMP kinase, thymidylat 94.5 0.016 5.6E-07 58.2 2.9 29 525-553 22-50 (227)
424 3tqf_A HPR(Ser) kinase; transf 94.5 0.019 6.5E-07 55.3 3.2 33 517-550 6-38 (181)
425 3tmk_A Thymidylate kinase; pho 94.5 0.02 7E-07 57.1 3.6 29 526-554 3-31 (216)
426 3b60_A Lipid A export ATP-bind 94.5 8.3 0.00029 43.7 33.9 8 502-509 359-366 (582)
427 3d3q_A TRNA delta(2)-isopenten 94.5 0.019 6.4E-07 61.3 3.5 25 529-553 8-32 (340)
428 1nrj_B SR-beta, signal recogni 94.5 0.018 6.2E-07 56.2 3.2 23 530-552 14-36 (218)
429 1zbd_A Rabphilin-3A; G protein 94.5 0.019 6.6E-07 55.3 3.3 22 530-551 10-31 (203)
430 4b4t_I 26S protease regulatory 94.5 0.12 4E-06 56.7 9.8 30 524-553 212-241 (437)
431 3cmu_A Protein RECA, recombina 94.5 0.077 2.6E-06 68.3 9.5 48 518-565 720-770 (2050)
432 1mh1_A RAC1; GTP-binding, GTPa 94.5 0.019 6.5E-07 54.0 3.2 21 530-550 7-27 (186)
433 3dz8_A RAS-related protein RAB 94.4 0.018 6.3E-07 55.0 3.1 23 530-552 25-47 (191)
434 3oes_A GTPase rhebl1; small GT 94.4 0.018 6.3E-07 55.6 3.1 24 529-552 25-48 (201)
435 3tkl_A RAS-related protein RAB 94.4 0.024 8.1E-07 54.0 3.8 22 530-551 18-39 (196)
436 3cmw_A Protein RECA, recombina 94.4 0.087 3E-06 66.9 9.8 47 516-563 369-419 (1706)
437 2xb4_A Adenylate kinase; ATP-b 94.4 0.02 6.9E-07 56.9 3.3 23 530-552 2-24 (223)
438 3b5x_A Lipid A export ATP-bind 94.4 8.7 0.0003 43.5 38.2 8 502-509 359-366 (582)
439 1q57_A DNA primase/helicase; d 94.4 0.047 1.6E-06 61.2 6.7 27 524-550 238-264 (503)
440 2il1_A RAB12; G-protein, GDP, 94.4 0.019 6.6E-07 55.1 3.0 22 530-551 28-49 (192)
441 3erv_A Putative C39-like pepti 94.3 0.025 8.5E-07 57.2 3.9 38 96-137 176-215 (236)
442 2a5j_A RAS-related protein RAB 94.3 0.021 7.1E-07 54.6 3.2 22 530-551 23-44 (191)
443 2qu8_A Putative nucleolar GTP- 94.3 0.02 6.8E-07 56.7 3.2 23 529-551 30-52 (228)
444 2ewv_A Twitching motility prot 94.3 0.036 1.2E-06 59.9 5.4 47 645-701 199-245 (372)
445 4edh_A DTMP kinase, thymidylat 94.3 0.022 7.6E-07 56.6 3.5 29 526-554 4-32 (213)
446 2o52_A RAS-related protein RAB 94.3 0.021 7.3E-07 55.2 3.2 22 530-551 27-48 (200)
447 1ak2_A Adenylate kinase isoenz 94.3 0.025 8.5E-07 56.5 3.8 27 526-552 14-40 (233)
448 3cmu_A Protein RECA, recombina 94.3 0.085 2.9E-06 67.9 9.3 40 525-564 380-420 (2050)
449 1zj6_A ADP-ribosylation factor 94.3 0.022 7.6E-07 54.1 3.2 23 528-550 16-38 (187)
450 3i8s_A Ferrous iron transport 94.3 0.021 7.3E-07 58.7 3.3 23 530-552 5-27 (274)
451 2iwr_A Centaurin gamma 1; ANK 94.2 0.018 6.3E-07 54.0 2.5 21 530-550 9-29 (178)
452 2atv_A RERG, RAS-like estrogen 94.2 0.023 7.8E-07 54.6 3.2 29 529-557 29-62 (196)
453 2h57_A ADP-ribosylation factor 94.2 0.018 6.2E-07 54.9 2.5 24 529-552 22-45 (190)
454 3lv8_A DTMP kinase, thymidylat 94.2 0.025 8.6E-07 57.2 3.6 28 527-554 26-53 (236)
455 3cph_A RAS-related protein SEC 94.2 0.023 7.8E-07 55.0 3.2 23 529-551 21-43 (213)
456 1zd9_A ADP-ribosylation factor 94.2 0.023 7.9E-07 54.2 3.2 21 530-550 24-44 (188)
457 3iev_A GTP-binding protein ERA 94.2 0.022 7.7E-07 59.7 3.3 23 529-551 11-33 (308)
458 1x3s_A RAS-related protein RAB 94.2 0.023 8E-07 54.0 3.2 22 530-551 17-38 (195)
459 3exa_A TRNA delta(2)-isopenten 94.2 0.026 8.9E-07 59.5 3.7 25 528-552 3-27 (322)
460 2axn_A 6-phosphofructo-2-kinas 94.2 0.025 8.6E-07 63.9 3.9 45 527-578 34-78 (520)
461 2h17_A ADP-ribosylation factor 94.2 0.021 7.1E-07 54.1 2.8 21 530-550 23-43 (181)
462 3cnl_A YLQF, putative uncharac 94.2 0.025 8.7E-07 58.0 3.6 30 529-558 100-129 (262)
463 3a1s_A Iron(II) transport prot 94.1 0.024 8.3E-07 57.9 3.4 23 530-552 7-29 (258)
464 2wsm_A Hydrogenase expression/ 94.1 0.023 7.9E-07 55.7 3.1 24 529-552 31-54 (221)
465 2p5s_A RAS and EF-hand domain 94.1 0.024 8.2E-07 54.6 3.2 23 529-551 29-51 (199)
466 2j1l_A RHO-related GTP-binding 94.1 0.025 8.5E-07 55.4 3.3 21 530-550 36-56 (214)
467 3bwd_D RAC-like GTP-binding pr 94.1 0.028 9.7E-07 52.7 3.6 23 529-551 9-31 (182)
468 2p65_A Hypothetical protein PF 94.1 0.022 7.6E-07 53.5 2.8 29 526-554 41-69 (187)
469 2f7s_A C25KG, RAS-related prot 94.1 0.026 8.9E-07 55.0 3.4 23 530-552 27-49 (217)
470 3c5c_A RAS-like protein 12; GD 94.1 0.025 8.7E-07 54.0 3.2 28 530-557 23-55 (187)
471 4tmk_A Protein (thymidylate ki 94.1 0.029 9.8E-07 55.8 3.6 28 527-554 2-29 (213)
472 3ld9_A DTMP kinase, thymidylat 94.1 0.027 9.3E-07 56.5 3.5 28 526-553 19-46 (223)
473 2q3h_A RAS homolog gene family 94.0 0.027 9.2E-07 54.2 3.3 24 528-551 20-43 (201)
474 4b4t_H 26S protease regulatory 94.0 0.11 3.7E-06 57.5 8.5 30 523-552 238-267 (467)
475 2ocp_A DGK, deoxyguanosine kin 94.0 0.027 9.2E-07 56.5 3.4 27 527-553 1-27 (241)
476 2fh5_B SR-beta, signal recogni 94.0 0.033 1.1E-06 54.2 4.0 24 529-552 8-31 (214)
477 1h65_A Chloroplast outer envel 94.0 0.026 8.8E-07 57.8 3.2 23 530-552 41-63 (270)
478 2gco_A H9, RHO-related GTP-bin 94.0 0.026 8.9E-07 54.5 3.1 22 530-551 27-48 (201)
479 3def_A T7I23.11 protein; chlor 94.0 0.027 9.1E-07 57.4 3.3 23 530-552 38-60 (262)
480 4gzl_A RAS-related C3 botulinu 94.0 0.043 1.5E-06 53.2 4.7 30 529-558 31-65 (204)
481 1ltq_A Polynucleotide kinase; 94.0 0.027 9.2E-07 58.3 3.3 22 529-550 3-24 (301)
482 3q3j_B RHO-related GTP-binding 93.9 0.037 1.3E-06 54.3 4.1 30 529-558 28-62 (214)
483 2fu5_C RAS-related protein RAB 93.9 0.018 6.3E-07 54.2 1.8 22 530-551 10-31 (183)
484 1p5z_B DCK, deoxycytidine kina 93.8 0.02 6.8E-07 58.3 2.0 29 525-553 21-49 (263)
485 2b6h_A ADP-ribosylation factor 93.8 0.027 9.4E-07 54.1 2.9 25 526-550 27-51 (192)
486 3qf4_B Uncharacterized ABC tra 93.8 11 0.00039 42.7 28.7 12 501-512 370-381 (598)
487 2atx_A Small GTP binding prote 93.8 0.03 1E-06 53.4 3.1 22 530-551 20-41 (194)
488 1jwy_B Dynamin A GTPase domain 93.8 0.03 1E-06 58.3 3.3 24 530-553 26-49 (315)
489 2r62_A Cell division protease 93.8 0.01 3.5E-07 60.3 -0.3 33 517-551 35-67 (268)
490 1qvr_A CLPB protein; coiled co 93.8 0.064 2.2E-06 64.2 6.5 35 529-563 589-624 (854)
491 2aka_B Dynamin-1; fusion prote 93.7 0.029 9.9E-07 57.8 3.0 23 530-552 28-50 (299)
492 3crm_A TRNA delta(2)-isopenten 93.7 0.031 1.1E-06 59.1 3.2 25 529-553 6-30 (323)
493 2hf9_A Probable hydrogenase ni 93.7 0.031 1.1E-06 54.9 3.1 22 530-551 40-61 (226)
494 3r7w_A Gtpase1, GTP-binding pr 93.6 0.036 1.2E-06 58.0 3.5 26 527-552 2-27 (307)
495 4djt_A GTP-binding nuclear pro 93.5 0.017 5.9E-07 56.4 0.8 22 530-551 13-34 (218)
496 2yl4_A ATP-binding cassette SU 93.4 13 0.00044 42.2 32.9 13 500-512 358-370 (595)
497 3l0o_A Transcription terminati 93.4 0.018 6.1E-07 62.3 0.8 53 498-552 136-199 (427)
498 2x77_A ADP-ribosylation factor 93.4 0.026 8.9E-07 53.7 1.9 24 527-550 21-44 (189)
499 2hup_A RAS-related protein RAB 93.4 0.038 1.3E-06 53.5 3.1 22 530-551 31-52 (201)
500 2yc2_C IFT27, small RAB-relate 93.2 0.02 6.8E-07 55.1 0.8 22 530-551 22-43 (208)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7.4e-91 Score=866.59 Aligned_cols=474 Identities=32% Similarity=0.457 Sum_probs=439.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 227 LILLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNV 306 (709)
Q Consensus 227 l~~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~ 306 (709)
++.++++..++.+++.+++.+.+.++..++|.++|+|++++|++||+++++||+++|+++|++.+++.++..+..++..+
T Consensus 142 ~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~ 221 (1321)
T 4f4c_A 142 YAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYL 221 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHH
Q 005203 307 LQGTGALIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRY 386 (709)
Q Consensus 307 l~~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~ 386 (709)
+++++++++|++++|++++++++.+|+++++..++.+..++..++.++..++.++.+.|+++|+++||+||.|+.+.+||
T Consensus 222 ~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 301 (1321)
T 4f4c_A 222 SQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERY 301 (1321)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHH
Confidence 99999999999999999999999999999888888888888888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 387 KHWLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQ 466 (709)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~ 466 (709)
.+..++..+...+.....+.......++..+..++++|+|++++.+|.+|+|.+++++.|...+..++..+...+..+..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (1321)
T 4f4c_A 302 STAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGT 381 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888877777777777888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCccccc-cccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHH
Q 005203 467 SVGASEKVFQLMDLMPSDQFMSK-GKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLV 545 (709)
Q Consensus 467 ~~~~~~Rl~~il~~~~e~~~~~~-~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLl 545 (709)
+..+.+|+.++++.+|+.+.... +....+..|+|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+
T Consensus 382 ~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll 461 (1321)
T 4f4c_A 382 AQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTII 461 (1321)
T ss_dssp HHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHH
T ss_pred HHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHH
Confidence 99999999999998876542211 22223456789999999999977678999999999999999999999999999999
Q ss_pred HHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcC
Q 005203 546 NLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSL 625 (709)
Q Consensus 546 kLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~L 625 (709)
++|+|+|+|++|+|.+||+|+++++.+++|++||||+|||+||+|||+|||+||++ ++++|++++||+.|++||||++|
T Consensus 462 ~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~-~~~~~~v~~a~~~a~l~~~i~~l 540 (1321)
T 4f4c_A 462 SLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE-GITREEMVAACKMANAEKFIKTL 540 (1321)
T ss_dssp HHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHHS
T ss_pred HHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc-cchHHHHHHHHHHccchhHHHcC
Confidence 99999999999999999999999999999999999999999999999999999987 89999999999999999999999
Q ss_pred CCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 626 PSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 626 P~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
|+||||.||| .+|||||||||+||||+|++|+||||||||||||+++|+.|+++|+++.+ |+|+|+||||++|+
T Consensus 541 p~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~----~~T~iiiaHrls~i 616 (1321)
T 4f4c_A 541 PNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK----GRTTIIIAHRLSTI 616 (1321)
T ss_dssp TTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT----TSEEEEECSCTTTT
T ss_pred CCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC----CCEEEEEcccHHHH
Confidence 9999999999 49999999999999999999999999999999999999999999999876 49999999999998
Q ss_pred hh
Q 005203 704 AL 705 (709)
Q Consensus 704 ~~ 705 (709)
..
T Consensus 617 ~~ 618 (1321)
T 4f4c_A 617 RN 618 (1321)
T ss_dssp TT
T ss_pred Hh
Confidence 64
No 2
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.4e-88 Score=778.08 Aligned_cols=530 Identities=25% Similarity=0.387 Sum_probs=468.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 172 KMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SEIAVFHRNVRLLILLCVTSGICSGLRGCCFGIANM 250 (709)
Q Consensus 172 ~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~-~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~~~ 250 (709)
+++++++++++.++.+++++++..++.++.|++++..++.... .+...+.....++.++.++..++.+++.++..+.+.
T Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (587)
T 3qf4_A 13 TLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQ 92 (587)
T ss_dssp CGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455688899999999999999999999999999888764321 121112122223333444556677888899999999
Q ss_pred HHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005203 251 ILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLCTLMI 330 (709)
Q Consensus 251 ~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv~l~~ 330 (709)
++..++|.++|+|++++|+.||+++++|++++|+++|++.+++++...+..++...++.++++++++.++|++++++++.
T Consensus 93 ~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~ 172 (587)
T 3qf4_A 93 NFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFL 172 (587)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 331 CSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGFWNLC 410 (709)
Q Consensus 331 ~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (709)
+|+++++..++.+..++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|.+..++..+...+..+.......+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (587)
T 3qf4_A 173 IPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPL 252 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988887777777777777777778999999999999999999999999999999999999988888877777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 005203 411 FNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKG 490 (709)
Q Consensus 411 ~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~~ 490 (709)
..++..+..++++++|++++.+|.+|+|.+++++.|..++..++..+...+..+.++..+.+|+.++++.+++.+.....
T Consensus 253 ~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~ 332 (587)
T 3qf4_A 253 FIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNA 332 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCc
Confidence 77777778888999999999999999999999999999999999999999999999999999999999987764322221
Q ss_pred ccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC
Q 005203 491 KKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD 570 (709)
Q Consensus 491 ~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~ 570 (709)
...++..+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+|+|+|+|+|++|+|.+||+|+++++
T Consensus 333 ~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~ 411 (587)
T 3qf4_A 333 LALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK 411 (587)
T ss_dssp BCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBC
T ss_pred cccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCC
Confidence 2222345789999999999864 468999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHH
Q 005203 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAI 648 (709)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaL 648 (709)
.+++|++||||+|||.+|++||+|||.++.+ +.++++++++++.++++|++.++|+||||.+|+ .+||||||||++|
T Consensus 412 ~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~l 490 (587)
T 3qf4_A 412 LKDLRGHISAVPQETVLFSGTIKENLKWGRE-DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490 (587)
T ss_dssp HHHHHHHEEEECSSCCCCSEEHHHHHTTTCS-SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHH
T ss_pred HHHHHhheEEECCCCcCcCccHHHHHhccCC-CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHH
Confidence 9999999999999999999999999999976 789999999999999999999999999999999 4999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+++|+|||||||||+||+++|+.|.+.|+++.+ ++|+|+||||++++. .+|
T Consensus 491 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~----~~tvi~itH~l~~~~-~~d 545 (587)
T 3qf4_A 491 ARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK----GCTTFIITQKIPTAL-LAD 545 (587)
T ss_dssp HHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHST----TCEEEEEESCHHHHT-TSS
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCC----CCEEEEEecChHHHH-hCC
Confidence 9999999999999999999999999999999998754 599999999999986 465
No 3
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.2e-88 Score=781.43 Aligned_cols=534 Identities=27% Similarity=0.440 Sum_probs=477.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 166 LWRALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SEIAVFHRNVRLLILLCVTSGICSGLRGCC 244 (709)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~-~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~ 244 (709)
.+..+++++++++++++.++.+++++++..++.++.|++++..++.... .+...+......+.++.++..++.+++.++
T Consensus 21 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (598)
T 3qf4_B 21 PTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKI 100 (598)
T ss_dssp HHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888999999999999999999999999999999888754321 121122222333344455567788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005203 245 FGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLG 324 (709)
Q Consensus 245 ~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~La 324 (709)
....+.++..++|.++|+|++++|++||+++++||+++|+++|++.+++.+...+..++.++++.++++++++.++|+++
T Consensus 101 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 180 (598)
T 3qf4_B 101 MLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILS 180 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 325 LCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAY 404 (709)
Q Consensus 325 lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~ 404 (709)
+++++.+|+++++..++.+..++..++.++..++..+.+.|+++|+++||+||.|+.+.++|.+..++..+...+..+..
T Consensus 181 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (598)
T 3qf4_B 181 LVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFS 260 (598)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887778788777777777778899999999999999999999999999999999999888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 005203 405 GFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSD 484 (709)
Q Consensus 405 ~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~ 484 (709)
.....+..++..+..++++++|++++.+|.+|+|.+++++.|...+..++..+...+..+..+..+.+|+.++++.+++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 340 (598)
T 3qf4_B 261 GVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEK 340 (598)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 77777777777788888999999999999999999999999999999999999999999999999999999999987764
Q ss_pred ccccccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE
Q 005203 485 QFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF 564 (709)
Q Consensus 485 ~~~~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~ 564 (709)
+. ......++..+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+|+|+|+|+|++|+|.+||+
T Consensus 341 ~~-~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 417 (598)
T 3qf4_B 341 DD-PDAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGI 417 (598)
T ss_dssp CC-SSCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTE
T ss_pred CC-CCCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCE
Confidence 31 111222334578999999999974 357999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHH
Q 005203 565 PIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQ 642 (709)
Q Consensus 565 di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQ 642 (709)
|+++++.+++|++||||+|||.+|++||+|||.++++ +.++++++++++.++++++++++|+||||.+|| .+|||||
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 496 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQ 496 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST-TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHH
T ss_pred EhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHH
Confidence 9999999999999999999999999999999999976 788999999999999999999999999999999 5999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 643 kQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||++|||||+++|+|||||||||+||+++|+.|.+.|+++.+ |+|+|+||||++++.. +|
T Consensus 497 ~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~----~~t~i~itH~l~~~~~-~d 557 (598)
T 3qf4_B 497 RQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME----GKTSIIIAHRLNTIKN-AD 557 (598)
T ss_dssp HHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT----TSEEEEESCCTTHHHH-CS
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC----CCEEEEEecCHHHHHc-CC
Confidence 9999999999999999999999999999999999999998864 5999999999999876 66
No 4
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.2e-87 Score=776.42 Aligned_cols=532 Identities=30% Similarity=0.408 Sum_probs=471.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ch---hHHH----HHHHHHHHHHHHHHHHHHHHH
Q 005203 170 LGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SE---IAVF----HRNVRLLILLCVTSGICSGLR 241 (709)
Q Consensus 170 ~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~-~d---~~~~----~~~~~ll~~l~~~~~~~~~lr 241 (709)
+++++++.+++++.++.+++++++..++.++.|++++..++.... .+ ...+ ......+.++.++..++.+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999998888754321 11 1111 011111222333455677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005203 242 GCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSW 321 (709)
Q Consensus 242 ~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~ 321 (709)
.++..+.+.++..++|.++|+|++++|++||+++++||+++|+++|++.+++++...+..++.++++.++++++++.++|
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 161 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV 161 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 89999999999999999999999999999999999999999999999999999988888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Q 005203 322 PLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQS 401 (709)
Q Consensus 322 ~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~ 401 (709)
++++++++.+|+++++..++.+..++..++..+..++..+.+.|+++|+++||+||.|+.+.++|.+..++..+...+..
T Consensus 162 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (578)
T 4a82_A 162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241 (578)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988887777777777777778878999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005203 402 AAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLM 481 (709)
Q Consensus 402 ~~~~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~ 481 (709)
++......+...+..+..++++++|++++.+|.+|+|.+++++.|...+..++..+...+..+.++..+.+|+.++++.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~ 321 (578)
T 4a82_A 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 78888788878888888889999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCccccccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE
Q 005203 482 PSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI 561 (709)
Q Consensus 482 ~e~~~~~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~i 561 (709)
++..........+...+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+|+|+|+|+|++|+|.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 400 (578)
T 4a82_A 322 YDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400 (578)
T ss_dssp CSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEE
T ss_pred CcccCCCCccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE
Confidence 7643211112222345789999999999864 368999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCC
Q 005203 562 DGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLS 639 (709)
Q Consensus 562 dG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LS 639 (709)
||+|+++++.+++|++||||+|||.+|++||+|||.+|.+ +.++++++++++.++++|++.++|+||||.+|+ .+||
T Consensus 401 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LS 479 (578)
T 4a82_A 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479 (578)
T ss_dssp TTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS-SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSC
T ss_pred CCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCC
Confidence 9999999999999999999999999999999999999976 788999999999999999999999999999999 5999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 640 GGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||||++|||||+++|++|+||||||+||+++|+.+.+.|+++.+ ++|+|+||||++++.. +|
T Consensus 480 gGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~----~~t~i~itH~l~~~~~-~d 543 (578)
T 4a82_A 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK----DRTTLIVAHRLSTITH-AD 543 (578)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT----TSEEEEECSSGGGTTT-CS
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC----CCEEEEEecCHHHHHc-CC
Confidence 9999999999999999999999999999999999999999998864 4899999999999865 66
No 5
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5.2e-86 Score=763.45 Aligned_cols=532 Identities=28% Similarity=0.437 Sum_probs=469.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 168 RALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SEIAVFHRNVRLLILLCVTSGICSGLRGCCFG 246 (709)
Q Consensus 168 ~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~-~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~ 246 (709)
+.+++++++.+++++.++.+++++++..++.++.|++++..++.... .+..........+.++.++..++.+++.++..
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (582)
T 3b5x_A 11 QTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLS 90 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888889999999999988877654321 11111100011122334445667788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005203 247 IANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLC 326 (709)
Q Consensus 247 ~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv 326 (709)
..+.++..++|.++|+|++++|++||+++++||+++|+++|++.+++.+...+..++.++++.++++++++.++|+++++
T Consensus 91 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 170 (582)
T 3b5x_A 91 WVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLV 170 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 327 TLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGF 406 (709)
Q Consensus 327 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~ 406 (709)
+++.+|+++++...+.+..++..++.++..++..+.+.|+++|+++||+||.|+.+.++|.+..++..+...+..+....
T Consensus 171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3b5x_A 171 LIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSI 250 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777777777777777887889999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 005203 407 WNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQF 486 (709)
Q Consensus 407 ~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~ 486 (709)
...+..++..+..++++++|++++.+|.+|+|.+++++.|...+..++..+...+..+..+..+.+|+.++++.+++.+.
T Consensus 251 ~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 330 (582)
T 3b5x_A 251 ADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN 330 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Confidence 88888888888888899999999999999999999999999999999999999999999999999999999988765431
Q ss_pred ccccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC
Q 005203 487 MSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI 566 (709)
Q Consensus 487 ~~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di 566 (709)
...+.++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+|+|+|+|+|++|+|.+||+|+
T Consensus 331 --~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~ 407 (582)
T 3b5x_A 331 --GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV 407 (582)
T ss_pred --CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEh
Confidence 111112234679999999999853 25799999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEcccCcccccCHHHHhccCC-CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHH
Q 005203 567 KEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGC-TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (709)
Q Consensus 567 ~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~-~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (709)
++++.+++|++||||+|||.+|++|++|||.++. + +.++++++++++.++++++++++|+||||.+|+ .+||||||
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~ 486 (582)
T 3b5x_A 408 RDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEG-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486 (582)
T ss_pred hhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCC-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHH
Confidence 9999999999999999999999999999999996 4 678999999999999999999999999999999 49999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+++|++|+||||||+||+++|+.|.+.|+++.+ |+|+|+||||++++.. +|
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~----~~tvi~itH~~~~~~~-~d 546 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK----NKTVLVIAHRLSTIEQ-AD 546 (582)
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC----CCEEEEEecCHHHHHh-CC
Confidence 999999999999999999999999999999999999998764 5999999999999874 66
No 6
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=7.4e-86 Score=764.04 Aligned_cols=535 Identities=32% Similarity=0.514 Sum_probs=466.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---hh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 169 ALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSS---EI-AVFHRNVRLLILLCVTSGICSGLRGCC 244 (709)
Q Consensus 169 ~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~---d~-~~~~~~~~ll~~l~~~~~~~~~lr~~~ 244 (709)
.+++++++.+++++.+..+++++++..++.++.|++++..++..... +. ..+......+.++.++..++.+++.++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (595)
T 2yl4_A 6 EARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYL 85 (595)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777889999888888888888888888999887776532111 00 011111112223334455677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005203 245 FGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLG 324 (709)
Q Consensus 245 ~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~La 324 (709)
....+.++..++|.++|+|++++|++||+++++||+++|+++|++.+++.+...+..++.++++.++++++++.++|+++
T Consensus 86 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 165 (595)
T 2yl4_A 86 MQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLA 165 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 325 LCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAY 404 (709)
Q Consensus 325 lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~ 404 (709)
+++++.+|+++++...+.+..++..++.++..++..+.+.|+++|+++||+||.|+.+.++|.+..++..+...+..+..
T Consensus 166 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (595)
T 2yl4_A 166 TFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFAR 245 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888777777777778888888878889999999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 005203 405 GFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSD 484 (709)
Q Consensus 405 ~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~ 484 (709)
........++..+..++++++|++++.+|.+|+|.+++++.|...+..++..+...+..+..+..+.+|+.++++.+++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 325 (595)
T 2yl4_A 246 AGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKL 325 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 77777777777777888899999999999999999999999999999999999999999999999999999999987654
Q ss_pred ccccccccccCCCCc-EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC
Q 005203 485 QFMSKGKKLQRLMGR-IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG 563 (709)
Q Consensus 485 ~~~~~~~~~~~~~~~-I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG 563 (709)
+........++..++ |+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+|+|+|+|+|++|+|.+||
T Consensus 326 ~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 405 (595)
T 2yl4_A 326 PFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDG 405 (595)
T ss_dssp CSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETT
T ss_pred CCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECC
Confidence 311111111223467 9999999999854235799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCC--CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCC
Q 005203 564 FPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQ--DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLS 639 (709)
Q Consensus 564 ~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~--~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LS 639 (709)
+|+++++.+++|++||||+|||.+|++||+|||.++.+. +.++++++++++.++++|+++++|+||||.+|+ .+||
T Consensus 406 ~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LS 485 (595)
T 2yl4_A 406 HDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLS 485 (595)
T ss_dssp EETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCC
T ss_pred EEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCC
Confidence 999999999999999999999999999999999998652 278999999999999999999999999999998 5999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 640 GGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||||++|||||+++|++|+||||||+||+++|+.+.+.|+++.+ ++|+|+||||++++.. +|
T Consensus 486 gGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~----~~tvi~itH~~~~~~~-~d 549 (595)
T 2yl4_A 486 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD----GRTVLVIAHRLSTIKN-AN 549 (595)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT----TSEEEEECCCHHHHHH-SS
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHHc-CC
Confidence 9999999999999999999999999999999999999999998865 4899999999999865 66
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=6.5e-86 Score=762.63 Aligned_cols=532 Identities=28% Similarity=0.444 Sum_probs=470.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 168 RALGKMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQS-SEIAVFHRNVRLLILLCVTSGICSGLRGCCFG 246 (709)
Q Consensus 168 ~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~-~d~~~~~~~~~ll~~l~~~~~~~~~lr~~~~~ 246 (709)
+.+++++++.+++++.+..+++++++..++.++.|++++..++.... .+..........+.++.++..++.+++.+...
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (582)
T 3b60_A 11 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCIS 90 (582)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888999888888888899999999999988887754321 11111100011122334445667888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005203 247 IANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLC 326 (709)
Q Consensus 247 ~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv 326 (709)
..+.++..++|.++|+|++++|++||+++++||+++|+++|++.+++.+...+..++.++++.++++++++.++|+++++
T Consensus 91 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 170 (582)
T 3b60_A 91 WVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSII 170 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 327 TLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGF 406 (709)
Q Consensus 327 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~ 406 (709)
+++.+|+++++...+.+..++..++.++..++..+.+.|+++|+++||+||.|+.+.++|.+..++..+...+..+....
T Consensus 171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3b60_A 171 LVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSI 250 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777777777777777887889999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 005203 407 WNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQF 486 (709)
Q Consensus 407 ~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~ 486 (709)
...+..++..+..++++++|++++.+|.+|+|.+++++.|...+..++..+...+..+..+..+.+|+.++++.+++.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 330 (582)
T 3b60_A 251 SDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE 330 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 88888888888888899999999999999999999999999999999999999999999999999999999998766431
Q ss_pred ccccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC
Q 005203 487 MSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI 566 (709)
Q Consensus 487 ~~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di 566 (709)
.....++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+|+|+|+|+|++|+|.+||+|+
T Consensus 331 --~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~ 407 (582)
T 3b60_A 331 --GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL 407 (582)
T ss_dssp --CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEET
T ss_pred --CCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEc
Confidence 111222234679999999999743 25799999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEcccCcccccCHHHHhccCC-CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHH
Q 005203 567 KEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGC-TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (709)
Q Consensus 567 ~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~-~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (709)
++++.+++|++||||+|||.+|++|++|||.++. + +.++++++++++.++++++++++|+||||.+|+ .+||||||
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~ 486 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFNDTVANNIAYARTE-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR 486 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTS-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred cccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCC-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHH
Confidence 9999999999999999999999999999999986 4 678999999999999999999999999999999 49999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+++|++|+||||||+||+++|+.|.+.|+++.+ |+|+|+||||++++.. +|
T Consensus 487 qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~----~~tvi~itH~~~~~~~-~d 546 (582)
T 3b60_A 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK----NRTSLVIAHRLSTIEQ-AD 546 (582)
T ss_dssp HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT----TSEEEEECSCGGGTTT-CS
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC----CCEEEEEeccHHHHHh-CC
Confidence 999999999999999999999999999999999999998864 4899999999999864 66
No 8
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.9e-88 Score=844.93 Aligned_cols=530 Identities=28% Similarity=0.419 Sum_probs=439.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 172 KMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSS--EI-AVFHRNVRLLILLCVTSGICSGLRGCCFGIA 248 (709)
Q Consensus 172 ~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~--d~-~~~~~~~~ll~~l~~~~~~~~~lr~~~~~~~ 248 (709)
+++.+.+++++.++.+++++++........+.++...+...... +. .........+.+++++..++.+++.++....
T Consensus 742 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~ 821 (1321)
T 4f4c_A 742 EILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIA 821 (1321)
T ss_dssp HHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555777777777766666655554444455544443222111 10 0011112223344555677888999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhcc--CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005203 249 NMILVKRMRETLYSALLLQDISFFDS--ETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLGLC 326 (709)
Q Consensus 249 ~~~l~~~lr~~lf~~Ll~lp~~~fe~--~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~Lalv 326 (709)
+.++..++|.++|++++++|++||+. +++|++++|+++|++.+++.+...+..++..++..++.++++++++|+++++
T Consensus 822 ~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv 901 (1321)
T 4f4c_A 822 SESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALL 901 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHH
Confidence 99999999999999999999999986 6799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 327 TLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAYGF 406 (709)
Q Consensus 327 ~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~ 406 (709)
+++.+|++++...++.+..++...+..+..++....+.|+++|+++||+|+.|+.+.++|.+..+...+...+.......
T Consensus 902 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 981 (1321)
T 4f4c_A 902 IIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGL 981 (1321)
T ss_dssp HHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888777655544443334444455677788899999999999999999999999999999888887777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 005203 407 WNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQL--TKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSD 484 (709)
Q Consensus 407 ~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l--~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~ 484 (709)
.......+..+..++++++|++++..|..+.+.+ ++++.+......++..+...+.++.....+.+|+.++++.+++.
T Consensus 982 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 1061 (1321)
T 4f4c_A 982 SYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKI 1061 (1321)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccC
Confidence 6666666777778888999999999888776554 33344444444556667777888889999999999999988875
Q ss_pred ccccccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE
Q 005203 485 QFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF 564 (709)
Q Consensus 485 ~~~~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~ 564 (709)
+........++..|+|+|+||+|+||++++.+||+|+||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+
T Consensus 1062 ~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~ 1141 (1321)
T 4f4c_A 1062 DSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGS 1141 (1321)
T ss_dssp CTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTE
T ss_pred CCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCE
Confidence 42222223334568899999999999766678999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEcccCcccccCHHHHhccCC-CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChH
Q 005203 565 PIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGC-TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGG 641 (709)
Q Consensus 565 di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~-~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGG 641 (709)
|++++++++||++|++|||||+||+|||||||+||. |++++||++++||+.|++||||++||+||||.||| .+||||
T Consensus 1142 di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgG 1221 (1321)
T 4f4c_A 1142 EIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGG 1221 (1321)
T ss_dssp ETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHH
T ss_pred EhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHH
Confidence 999999999999999999999999999999999994 45789999999999999999999999999999999 499999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 642 QKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 642 QkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
|||||||||||+|+|+||||||||||||++||+.|+++|+++.+ +||+|+||||++||..
T Consensus 1222 QrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~----~~TvI~IAHRLsTi~~ 1281 (1321)
T 4f4c_A 1222 QKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE----GRTCIVIAHRLNTVMN 1281 (1321)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS----SSEEEEECSSSSTTTT
T ss_pred HHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC----CCEEEEeccCHHHHHh
Confidence 99999999999999999999999999999999999999988765 5999999999999875
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=7e-84 Score=802.06 Aligned_cols=532 Identities=31% Similarity=0.465 Sum_probs=461.7
Q ss_pred HHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh---------------------HHHHHHHHHHH
Q 005203 171 GKMWDLVS-KDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSSEI---------------------AVFHRNVRLLI 228 (709)
Q Consensus 171 ~~l~~~~~-~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~d~---------------------~~~~~~~~ll~ 228 (709)
.+++++.. .+++.++.+++++++..++..+.|.+++..++.....+. .........+.
T Consensus 36 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1284)
T 3g5u_A 36 LTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYT 115 (1284)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHHHH
Confidence 34445554 456667777777777777666777666555432110000 00011112233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 229 LLCVTSGICSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQ 308 (709)
Q Consensus 229 ~l~~~~~~~~~lr~~~~~~~~~~l~~~lr~~lf~~Ll~lp~~~fe~~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~ 308 (709)
+++++..++.+++.++..+.+.++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++..+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~ 195 (1284)
T 3g5u_A 116 GIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMAT 195 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHH
Q 005203 309 GTGALIYLIVLSWPLGLCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKH 388 (709)
Q Consensus 309 ~i~~li~m~~~s~~Lalv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~ 388 (709)
.++.+++++.++|++++++++.+|+++++..++.+..++..++.++..++.++.+.|+++|+++||+||.|+.+.++|.+
T Consensus 196 ~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~ 275 (1284)
T 3g5u_A 196 FFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNN 275 (1284)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHH
Confidence 99999999999999999999999999888888888888888788888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 389 WLGKLADINLRQSAAYGFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSV 468 (709)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~ 468 (709)
..++..+...+.....+....+..++..+..++++|+|++++..|.+|+|.+++++.+...+..++..+...+..+..+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (1284)
T 3g5u_A 276 NLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANAR 355 (1284)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888877777777777778888888999999999999999999999888887788888888999999999999
Q ss_pred HHHHHHHHHHhcCCCCccc-cccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHH
Q 005203 469 GASEKVFQLMDLMPSDQFM-SKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNL 547 (709)
Q Consensus 469 ~~~~Rl~~il~~~~e~~~~-~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkL 547 (709)
.+.+|+.++++.+|+.+.. ..+..+++..|.|+++||+|+|+++++.++|+|+||+|+|||++|||||||||||||+++
T Consensus 356 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~l 435 (1284)
T 3g5u_A 356 GAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQL 435 (1284)
T ss_dssp HHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 9999999999987764321 112222334678999999999986545689999999999999999999999999999999
Q ss_pred HhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCC
Q 005203 548 LLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPS 627 (709)
Q Consensus 548 Llgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~ 627 (709)
|+|+|+|++|+|.+||+|+++++.+++|++||||+|||+||++||+|||.+|.+ +.++++++++++.++++++|.++|+
T Consensus 436 l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~ 514 (1284)
T 3g5u_A 436 MQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-DVTMDEIEKAVKEANAYDFIMKLPH 514 (1284)
T ss_dssp TTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS-SCCHHHHHHHHHHTTCHHHHHHSTT
T ss_pred HhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999976 7899999999999999999999999
Q ss_pred CcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 628 GYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 628 GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
||||.+|| .+|||||||||+|||||+++|+|||||||||+||+++|+.|++.++.+.+ |+|+|+||||++++..
T Consensus 515 g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~----~~t~i~itH~l~~i~~ 590 (1284)
T 3g5u_A 515 QFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE----GRTTIVIAHRLSTVRN 590 (1284)
T ss_dssp GGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT----TSEEEEECSCHHHHTT
T ss_pred cccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcC----CCEEEEEecCHHHHHc
Confidence 99999999 49999999999999999999999999999999999999999999988765 5999999999999876
Q ss_pred hcC
Q 005203 706 SFD 708 (709)
Q Consensus 706 ~~~ 708 (709)
+|
T Consensus 591 -~d 592 (1284)
T 3g5u_A 591 -AD 592 (1284)
T ss_dssp -CS
T ss_pred -CC
Confidence 66
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.5e-77 Score=743.27 Aligned_cols=532 Identities=31% Similarity=0.443 Sum_probs=450.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---hhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 172 KMWDLVSKDRWIIFAAFSALIIAALSEIFIPHFLTASIFTAQSS---EIA--VFHRNVRLLILLCVTSGICSGLRGCCFG 246 (709)
Q Consensus 172 ~l~~~~~~~~~~l~~~~~~~l~~~~~~l~~P~~~~~~i~~~~~~---d~~--~~~~~~~ll~~l~~~~~~~~~lr~~~~~ 246 (709)
+++++.+++++.++.+++++++..++....|.++...+...... +.. .......++.+++++..++.+++.++..
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 774 (1284)
T 3g5u_A 695 RILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFG 774 (1284)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677777777777777777666666666655544221110 100 0111112233344455667788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhcc--CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 005203 247 IANMILVKRMRETLYSALLLQDISFFDS--ETVGDLTSRLGSDCQQVSRVIGNDLNLILRNVLQGTGALIYLIVLSWPLG 324 (709)
Q Consensus 247 ~~~~~l~~~lr~~lf~~Ll~lp~~~fe~--~~~Gdi~sRl~sdi~~I~~~l~~~l~~~~~~~l~~i~~li~m~~~s~~La 324 (709)
..+.++..++|.++|++++++|++||++ +++|++++|+++|++.+++.+...+..++.++++.++.+++++.++|.++
T Consensus 775 ~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~ 854 (1284)
T 3g5u_A 775 KAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLT 854 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999994 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005203 325 LCTLMICSALAGLMLIYGLYQKKAAKLVQEITASANEVAQETFSLMRTVRVYGTEKQEVKRYKHWLGKLADINLRQSAAY 404 (709)
Q Consensus 325 lv~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~a~~~~~~~E~l~gi~tIK~~~~e~~~~~r~~~~~~~~~~~~~~~~~~~ 404 (709)
+++++.+|+++++..++.++.++......+..++....+.|+++|+++||+|+.|+.+.++|.+..+...+...+...+.
T Consensus 855 lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1284)
T 3g5u_A 855 LLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVF 934 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887666666666666666667778889999999999999999999999999999988888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 005203 405 GFWNLCFNMLYHSTQVIAVLIGGMFIMRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSD 484 (709)
Q Consensus 405 ~~~~~~~~~i~~~~~i~vl~~ga~lV~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~ 484 (709)
+....+...+..+..++++|+|++++..|.+++|.++++..+......++..+...+..+.....+.+|+.++++.+|+.
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 1014 (1284)
T 3g5u_A 935 GITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEI 1014 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 77777777777788889999999999999999999999888887777777777666677778889999999999987764
Q ss_pred cccc-ccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC
Q 005203 485 QFMS-KGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG 563 (709)
Q Consensus 485 ~~~~-~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG 563 (709)
.... .+..+....+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||
T Consensus 1015 ~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g 1094 (1284)
T 3g5u_A 1015 DSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDG 1094 (1284)
T ss_dssp SSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSS
T ss_pred cccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC
Confidence 3211 111222345789999999999865445799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCC-CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCCh
Q 005203 564 FPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSG 640 (709)
Q Consensus 564 ~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSG 640 (709)
+|+++++.+++|++||||||||.+|++||+|||.++++ ...++++++++++.+++++++.++|+||||.+|| .+|||
T Consensus 1095 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSg 1174 (1284)
T 3g5u_A 1095 KEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSG 1174 (1284)
T ss_dssp SCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCH
T ss_pred EEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCH
Confidence 99999999999999999999999999999999999965 2478999999999999999999999999999999 49999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 641 GQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 641 GQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||++|||||+++|+|||||||||+||+++|+.|++.|++..+ |+|+|+||||++++.. ||
T Consensus 1175 Gq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~----~~tvi~isH~l~~i~~-~d 1237 (1284)
T 3g5u_A 1175 GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE----GRTCIVIAHRLSTIQN-AD 1237 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSS----SSCEEEECSCTTGGGS-CS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCC----CCEEEEEecCHHHHHc-CC
Confidence 999999999999999999999999999999999999999988654 5999999999999865 66
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=8.5e-61 Score=509.01 Aligned_cols=238 Identities=41% Similarity=0.599 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccccccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHH
Q 005203 463 SLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKS 542 (709)
Q Consensus 463 ~~~~~~~~~~Rl~~il~~~~e~~~~~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKS 542 (709)
.++.+..+++|++++++.+++..............+.|+++||+|+|++. .++|+|+||+|++||++|||||||||||
T Consensus 17 ~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKS 94 (306)
T 3nh6_A 17 RGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG--RETLQDVSFTVMPGQTLALVGPSGAGKS 94 (306)
T ss_dssp --CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTT--CEEEEEEEEEECTTCEEEEESSSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCC--CceeeeeeEEEcCCCEEEEECCCCchHH
Confidence 44556678899999998766533111111222235679999999999753 5799999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHH
Q 005203 543 TLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFI 622 (709)
Q Consensus 543 TLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I 622 (709)
||+|+|+|+|+|++|+|.+||+|+.+++..++|++||||+|++.||++||+|||.++.+ ..++++++++++.+++++++
T Consensus 95 TLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~-~~~~~~~~~~~~~~~l~~~i 173 (306)
T 3nh6_A 95 TILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGIHDAI 173 (306)
T ss_dssp HHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST-TCCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc-cCCHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999976 78899999999999999999
Q ss_pred HcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecCh
Q 005203 623 MSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700 (709)
Q Consensus 623 ~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRl 700 (709)
..+|+||+|.+|+ .+||||||||++|||||+++|+|||||||||+||+++|+.|.+.|+++.+ ++|+|+||||+
T Consensus 174 ~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~----~~Tvi~itH~l 249 (306)
T 3nh6_A 174 MAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA----NRTTIVVAHRL 249 (306)
T ss_dssp HHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT----TSEEEEECCSH
T ss_pred HhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC----CCEEEEEEcCh
Confidence 9999999999999 49999999999999999999999999999999999999999999998865 48999999999
Q ss_pred hhhhhhcC
Q 005203 701 ISTALSFD 708 (709)
Q Consensus 701 sti~~~~~ 708 (709)
+++.. +|
T Consensus 250 ~~~~~-aD 256 (306)
T 3nh6_A 250 STVVN-AD 256 (306)
T ss_dssp HHHHT-CS
T ss_pred HHHHc-CC
Confidence 99876 66
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=7.1e-52 Score=428.69 Aligned_cols=204 Identities=48% Similarity=0.718 Sum_probs=190.3
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
.+|+++||+|+|++. +.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.|+.+++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 469999999999532 2579999999999999999999999999999999999999999999999999999888889999
Q ss_pred eEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccC
Q 005203 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~ 655 (709)
||||+|++.+|++|++|||.++.+ ..+++++.++++.+++.+++.++|+||++.+++ .+||||||||++|||||+++
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999854 567889999999999999999999999999998 59999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 656 PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++||||||||+||+++++.+.+.|+++.+ ++|+|+|||+++.+.. +|
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~----g~tviivtH~~~~~~~-~d 211 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICK----GRTVIIIAHRLSTVKN-AD 211 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHT----TSEEEEECSSGGGGTT-SS
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcC----CCEEEEEeCCHHHHHh-CC
Confidence 999999999999999999999999998853 5899999999998765 66
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.4e-50 Score=422.10 Aligned_cols=204 Identities=39% Similarity=0.629 Sum_probs=188.4
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
+.|+++||+|+|++.+..++|+|+||+|++||++||+||||||||||+|+|+|+++| +|+|.+||.|+.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999753224799999999999999999999999999999999999997 8999999999988888889999
Q ss_pred eEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccC
Q 005203 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~ 655 (709)
||||+|++.+|++|++|||.++.. ..+++++.++++.+++.+++..+|+|+||.+++ .+||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 173 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD 173 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCcccccCHHHHHhccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcC
Confidence 999999999999999999999854 556788999999999999999999999999997 59999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 656 PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++||||||||+||+++++.+.+.|+++.+ ++|+|+|||+++.+.. +|
T Consensus 174 p~lllLDEPts~LD~~~~~~i~~~l~~l~~----~~tviivtH~~~~~~~-~d 221 (260)
T 2ghi_A 174 PKIVIFDEATSSLDSKTEYLFQKAVEDLRK----NRTLIIIAHRLSTISS-AE 221 (260)
T ss_dssp CSEEEEECCCCTTCHHHHHHHHHHHHHHTT----TSEEEEECSSGGGSTT-CS
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcC----CCEEEEEcCCHHHHHh-CC
Confidence 999999999999999999999999998854 4899999999998764 66
No 14
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-51 Score=423.32 Aligned_cols=201 Identities=41% Similarity=0.668 Sum_probs=187.5
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.|+.+.+...+|++||
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999953 257999999999999999999999999999999999999999999999999999888788899999
Q ss_pred EEcccCcccccCHHHHhccC-CCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCC
Q 005203 580 FVGQEPKLFRMDISSNISYG-CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDP 656 (709)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g-~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p 656 (709)
||+|++.+|.+|++|||.++ .+ ..+++++.++++.+++++++.++|.|++|.+++ .+||||||||++|||||+++|
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p 158 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEG-DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP 158 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTS-CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEcCCCccccccHHHHHhhhccC-CCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998 44 567889999999999999999999999999998 499999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 657 TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|+||||||+||+++++.+.+.|+++.+ ++|+|+|||+++.+.. +|
T Consensus 159 ~lllLDEPts~LD~~~~~~i~~~l~~~~~----~~tvi~vtH~~~~~~~-~d 205 (243)
T 1mv5_A 159 KILMLDEATASLDSESESMVQKALDSLMK----GRTTLVIAHRLSTIVD-AD 205 (243)
T ss_dssp SEEEEECCSCSSCSSSCCHHHHHHHHHHT----TSEEEEECCSHHHHHH-CS
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHhcC----CCEEEEEeCChHHHHh-CC
Confidence 99999999999999999999999998863 5899999999998764 66
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.8e-50 Score=422.23 Aligned_cols=208 Identities=43% Similarity=0.685 Sum_probs=188.7
Q ss_pred CCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhc
Q 005203 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG 576 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~ 576 (709)
.+.|+++||+|+|++.++.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.|+.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 34699999999997521257999999999999999999999999999999999999999999999999998888888999
Q ss_pred ceEEEcccCcccccCHHHHhccCCCCCCCH-HHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhc
Q 005203 577 RIGFVGQEPKLFRMDISSNISYGCTQDIKQ-QDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 577 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~-e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALl 653 (709)
+||||+|++.+|++|++|||.++.. ..++ +++.++++.+++++++..+|+|+++.++. .+||||||||++|||||+
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCS-SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred cEEEEecCCccccccHHHHHhhhcc-cCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999854 3444 77888889999999999999999999987 599999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++||||||||+||+++++.+.+.|+++.++ .++|+|+|||+++.+.. +|
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~--~g~tviivtHd~~~~~~-~d 224 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEW--ASRTVLLITQQLSLAER-AH 224 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTT--TTSEEEEECSCHHHHTT-CS
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhh--cCCEEEEEeCCHHHHHh-CC
Confidence 999999999999999999999999999987531 25899999999998765 66
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-48 Score=424.50 Aligned_cols=203 Identities=28% Similarity=0.443 Sum_probs=188.4
Q ss_pred CCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhc
Q 005203 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG 576 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~ 576 (709)
.+.|+++||+|+|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+|+.+++...+|+
T Consensus 17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 4679999999999743 3679999999999999999999999999999999999998 8999999999999999999999
Q ss_pred ceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcc
Q 005203 577 RIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 577 ~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr 654 (709)
.||||+|++.||.+|++|||.++. ...++++.++++.+++.+++.+.|.+|+|.+++ .+||||||||++|||||++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999763 457899999999999999999999999999998 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 655 DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++|+||||||+||++++..+.+.|+++.+ ++|+|+|||+++.+.. +|
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~----~~tvi~vtHd~e~~~~-aD 221 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFA----DCTVILCEARIEAMLE-CD 221 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTT----TSCEEEECSSSGGGTT-CS
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhC----CCEEEEEEcCHHHHHh-CC
Confidence 9999999999999999999999999987643 5899999999987654 55
No 17
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5e-47 Score=388.09 Aligned_cols=190 Identities=25% Similarity=0.413 Sum_probs=170.8
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
+.|+++||+|+|++. +.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 359999999999743 36799999999999999999999999999999999999999999999998 4
Q ss_pred eEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccC
Q 005203 578 IGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 578 I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~ 655 (709)
|+||+|++.+|++|++|||.++.. .++.+..++++..++.+++..+|.+++|.+++ .+||||||||++|||||+++
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC--CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEecCCcccCCCHHHHhhccCC--cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999842 34566777888889999999999999999998 59999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH-HHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 656 PTILILDEATSALDAESEHNIKGVL-RAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~L-~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|+||||||+||+++++.+.+.+ +++.+ ++|+|+|||+++.+.. +|
T Consensus 149 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~----~~tvi~vtH~~~~~~~-~d 197 (229)
T 2pze_A 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMA----NKTRILVTSKMEHLKK-AD 197 (229)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHCCCCCTT----TSEEEEECCCHHHHHH-CS
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHhhC----CCEEEEEcCChHHHHh-CC
Confidence 9999999999999999999999874 44432 5899999999998764 65
No 18
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.2e-47 Score=391.04 Aligned_cols=196 Identities=32% Similarity=0.495 Sum_probs=160.8
Q ss_pred EEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHH----
Q 005203 500 IDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL---- 574 (709)
Q Consensus 500 I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~l---- 574 (709)
|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.|+.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2469999999999999999999999999999999999999999999999999999987664
Q ss_pred hcceEEEcccCccccc-CHHHHhccCC----CCCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHH
Q 005203 575 RGRIGFVGQEPKLFRM-DISSNISYGC----TQDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQK 643 (709)
Q Consensus 575 R~~I~~V~Qd~~LF~g-TI~eNI~~g~----~~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQk 643 (709)
|+.||||+|++.+|.+ |++||+.++. ....+ .+++.++++..++.+.. ... ..||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 4579999999999987 9999998631 00122 23344455554443221 122 47999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+++|++||||||||+||++++..+.+.|+++.++ .|+|+|+|||+++. +..+|
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~--~g~tvi~vtHd~~~-~~~~d 213 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE--DGKTVVVVTHDINV-ARFGE 213 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEECSCHHH-HTTSS
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEcCCHHH-HHhCC
Confidence 9999999999999999999999999999999999999987532 15899999999985 44455
No 19
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=7e-47 Score=388.95 Aligned_cols=189 Identities=27% Similarity=0.450 Sum_probs=169.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+|+|++. +.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+|| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999742 35799999999999999999999999999999999999999999999999 49
Q ss_pred EEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCC
Q 005203 579 GFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDP 656 (709)
Q Consensus 579 ~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p 656 (709)
|||+|++.+|+.|++|||.++.. .++++..++.+.+++.+++..+|.|++|.+++ .+||||||||++|||||+++|
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ--LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC--CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCcCCCcCHHHHhhCccc--cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999843 34456677888888889999999999999988 499999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHH---HhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 657 TILILDEATSALDAESEHNIKGVLR---AVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~~L~---~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++||||||||+||+++++.+.+.|. ++. .++|+|+|||+++.+.. +|
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~----~~~tviivtH~~~~~~~-~d 196 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGML----KNKTRILVTHSMSYLPQ-VD 196 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTSTT----TTSEEEEECSCSTTGGG-SS
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhhc----CCCEEEEEecChHHHHh-CC
Confidence 9999999999999999999999984 332 25899999999998753 65
No 20
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3e-46 Score=404.36 Aligned_cols=200 Identities=29% Similarity=0.424 Sum_probs=171.2
Q ss_pred CcEEEEEEEEEcCCCC-CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHH---
Q 005203 498 GRIDFVDVSFRYSSRE-MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW--- 573 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~-~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~--- 573 (709)
.-|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+|+..++...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999997431 246999999999999999999999999999999999999999999999999999988664
Q ss_pred HhcceEEEcccCccccc-CHHHHhccCCC-CCC----CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005203 574 LRGRIGFVGQEPKLFRM-DISSNISYGCT-QDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (709)
Q Consensus 574 lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (709)
+|+.||||+|++.+|.. |++|||.++.. ... .++++.++++..++.+...+.| .+||||||||++
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~---------~~LSGGqkQRVa 173 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP---------SNLSGGQKQRVA 173 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT---------TTSCHHHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHH
Confidence 57899999999999965 99999987521 012 2345677777777766544443 469999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||+.+|++||||||||+||+++.+.|.+.|+++.++ .|+|+|+|||+++.+..-||
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~--~g~Tii~vTHdl~~~~~~aD 232 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRR--LGLTILLITHEMDVVKRICD 232 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--SCCEEEEEESCHHHHHHHCS
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCC
Confidence 999999999999999999999999999999999988642 26899999999999887776
No 21
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.5e-46 Score=394.26 Aligned_cols=196 Identities=31% Similarity=0.489 Sum_probs=164.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC--CCCHHHHhc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK--EVDIKWLRG 576 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~--~~~~~~lR~ 576 (709)
-|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+|+. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 48999999999753 46999999999999999999999999999999999999999999999999994 334567899
Q ss_pred ceEEEcccC--cccccCHHHHhccCCC-CCCCH----HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005203 577 RIGFVGQEP--KLFRMDISSNISYGCT-QDIKQ----QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (709)
Q Consensus 577 ~I~~V~Qd~--~LF~gTI~eNI~~g~~-~~~~~----e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (709)
.||||+|+| .+|..|++|||.++.. ...+. +++.++++..++.++..+.| .+||||||||++||
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPT---------HCLSFGQKKRVAIA 155 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBG---------GGSCHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCc---------ccCCHHHHHHHHHH
Confidence 999999997 5889999999987631 12233 34555555555443322211 47999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-ccCCCCcEEEEEecChhhhhhhcC
Q 005203 650 RAILRDPTILILDEATSALDAESEHNIKGVLRAVR-SDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 650 RALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||+.+|++||||||||+||+.+.+.+.+.|+++. +. |+|+|+|||+++.+..-+|
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~---g~tvi~vtHdl~~~~~~~d 212 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL---GITIIIATHDIDIVPLYCD 212 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH---CCEEEEEESCCSSGGGGCS
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhC---CCEEEEEecCHHHHHHhCC
Confidence 99999999999999999999999999999999886 32 5899999999998877666
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9.2e-46 Score=381.34 Aligned_cols=198 Identities=20% Similarity=0.395 Sum_probs=164.4
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHH-hcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL-RGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~l-R~~ 577 (709)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.+.+...+ |+.
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 479999999999999999999999999999999999999999999999999988877655 556
Q ss_pred eEEEcccCccccc-CHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcc
Q 005203 578 IGFVGQEPKLFRM-DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr 654 (709)
||||+|++.+|.+ |++||+.++.....+.++..+.+ .+.++.++ |++...+. .+||||||||++|||||++
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999987 99999998741122222222222 22333332 34444443 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 655 DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++||||||||+||+++.+.+.+.|+++.++ |+|+|+|||+++.+..-+|
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~---g~tvi~vtHd~~~~~~~~d 207 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQE---GTTILLVEQNALGALKVAH 207 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT---TCCEEEEESCHHHHHHHCS
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC---CCEEEEEecCHHHHHHhCC
Confidence 99999999999999999999999999988642 6899999999988877666
No 23
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.5e-45 Score=384.34 Aligned_cols=195 Identities=33% Similarity=0.475 Sum_probs=165.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC--CCCHHHHhc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK--EVDIKWLRG 576 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~--~~~~~~lR~ 576 (709)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+|+. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999963 47999999999999999999999999999999999999999999999999985 345567888
Q ss_pred ceEEEcccCccccc-CHHHHhccCC--CCCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005203 577 RIGFVGQEPKLFRM-DISSNISYGC--TQDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (709)
Q Consensus 577 ~I~~V~Qd~~LF~g-TI~eNI~~g~--~~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (709)
+||||+|++.+|.. |++|||.++. ....+ ++++.++++..++.++..+.| .+||||||||++||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGqkQRv~lA 171 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP---------DSLSGGQAQRVAIA 171 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCh---------hhCCHHHHHHHHHH
Confidence 99999999999976 9999998852 11222 234555666665544322211 37999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 650 RAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 650 RALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||+.+|++||||||||+||+++.+.+.+.|+++.++ |+|+|+|||+++.+..-+|
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~---g~tvi~vtHd~~~~~~~~d 227 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE---GMTMVVVTHEMGFAREVGD 227 (263)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHCS
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC---CCEEEEEcCCHHHHHHhCC
Confidence 9999999999999999999999999999999988643 6899999999998887666
No 24
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.4e-45 Score=376.04 Aligned_cols=194 Identities=27% Similarity=0.385 Sum_probs=160.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHH---Hh
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW---LR 575 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~---lR 575 (709)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999963 47999999999999999999999999999999999999999999999999998877543 44
Q ss_pred -cceEEEcccCcccc-cCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 576 -GRIGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 576 -~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
++||||+|++.+|. .|++||+.++.. ...+ ++++.++++..++.++..+.| .+||||||||++|
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qrv~l 151 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP---------YELSGGEQQRVAI 151 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG---------GGSCHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence 78999999999986 599999987521 0111 234455555554433222111 4799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+.+|++|+||||||+||+++.+.+.+.|+++.++ |+|+|+|||+++.+ .-+|
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~---g~tvi~vtHd~~~~-~~~d 207 (224)
T 2pcj_A 152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG---GTSIVMVTHERELA-ELTH 207 (224)
T ss_dssp HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT---TCEEEEECSCHHHH-TTSS
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEcCCHHHH-HhCC
Confidence 99999999999999999999999999999999988643 58999999999876 4455
No 25
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.9e-45 Score=384.45 Aligned_cols=196 Identities=28% Similarity=0.391 Sum_probs=169.9
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+|+...+...+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5899999999973 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCcc-cccCHHHHhccCCC---CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcc
Q 005203 579 GFVGQEPKL-FRMDISSNISYGCT---QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 579 ~~V~Qd~~L-F~gTI~eNI~~g~~---~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr 654 (709)
+||+|++.+ |..|++||+.++.. ....++++.++++..++.+...+.| .+||||||||++|||||++
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~QRv~iAraL~~ 158 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDY---------RVLSGGEQQRVQLARVLAQ 158 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBG---------GGCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCc---------ccCCHHHHHHHHHHHHHhc
Confidence 999999987 78899999998742 1223456666777666543322111 3699999999999999999
Q ss_pred ------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 655 ------DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 655 ------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++||||||||+||+++.+.+.+.|+++.++ .++|+|+|||+++.+..-||
T Consensus 159 ~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~--~~~tvi~vtHdl~~~~~~~d 216 (266)
T 4g1u_C 159 LWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ--EPLAVCCVLHDLNLAALYAD 216 (266)
T ss_dssp TCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH--SSEEEEEECSCHHHHHHHCS
T ss_pred ccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc--CCCEEEEEEcCHHHHHHhCC
Confidence 99999999999999999999999999988643 24799999999999887776
No 26
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-45 Score=382.93 Aligned_cols=194 Identities=31% Similarity=0.484 Sum_probs=168.9
Q ss_pred EEEEEEEEEcCCCCC--CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 500 IDFVDVSFRYSSREM--VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~--~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
|+++||+|+|+.... .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4699999999999999999999999999999999999999999999999998642 77889
Q ss_pred eEEEcccC--cccccCHHHHhccCCC----CCCCHHHHHHHHHHHhhH--HHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005203 578 IGFVGQEP--KLFRMDISSNISYGCT----QDIKQQDIEWAAKQAYAH--DFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (709)
Q Consensus 578 I~~V~Qd~--~LF~gTI~eNI~~g~~----~~~~~e~i~~aa~~a~l~--d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (709)
||||+|++ .+|..|++|||.++.. ....++++.++++..++. ++..+.| .+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---------~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP---------FFLSGGEKRRVAIA 150 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG---------GGSCHHHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh---------hhCCHHHHHHHHHH
Confidence 99999996 5789999999998632 122357788899998887 6655544 46999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 650 RAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 650 RALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||+++|++||||||||+||+++.+.+.+.|+++.++ |+|+|+|||+++.+..-+|
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~---g~tii~vtHd~~~~~~~~d 206 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL---GKTVILISHDIETVINHVD 206 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT---TCEEEEECSCCTTTGGGCS
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999988643 5899999999998877666
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.7e-45 Score=381.12 Aligned_cols=196 Identities=23% Similarity=0.393 Sum_probs=168.3
Q ss_pred CCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhc
Q 005203 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG 576 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~ 576 (709)
.+.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.+ ....+|+
T Consensus 13 ~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~ 88 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88 (256)
T ss_dssp -CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHT
T ss_pred CCeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhh
Confidence 457999999999963 579999999999999999999999999999999999999999999999999976 5667899
Q ss_pred ceEEEcccCccccc-CHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 577 RIGFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 577 ~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
+||||+|++.+|.+ |++||+.++.. ...+ ++++.++++..++.++..+.| .+||||||||++|||
T Consensus 89 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV---------STYSKGMVRKLLIAR 159 (256)
T ss_dssp TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBG---------GGCCHHHHHHHHHHH
T ss_pred cEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCCh---------hhCCHHHHHHHHHHH
Confidence 99999999999987 99999987521 0112 245667777777655443321 369999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+++|++||||||||+||+++.+.+.+.|+++.+. |+|+|+|||+++.+..-+|
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~---g~tiiivtHd~~~~~~~~d 214 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE---GLTILVSSHNMLEVEFLCD 214 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT---TCEEEEEECCHHHHTTTCS
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhC---CCEEEEEcCCHHHHHHHCC
Confidence 999999999999999999999999999999988643 6899999999998877666
No 28
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.9e-45 Score=381.39 Aligned_cols=197 Identities=26% Similarity=0.384 Sum_probs=163.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH-HHHhcc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI-KWLRGR 577 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~-~~lR~~ 577 (709)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++...+. ..+|+.
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999987764 356788
Q ss_pred eEEEcccCcccc-cCHHHHhccCCCC---C-----------CCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCCh
Q 005203 578 IGFVGQEPKLFR-MDISSNISYGCTQ---D-----------IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSG 640 (709)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~~---~-----------~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSG 640 (709)
||||+|++.+|. .|++|||.++... . .+.++. ...+.+.++.+ |++..... .+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHH-----HHHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHH-----HHHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999999986 6999999986321 1 111111 11223344443 44444444 48999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 641 GQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 641 GQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||++|||||+++|++||||||||+||+++.+.+.+.|+++.++ |+|+|+|||+++.+..-+|
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~---g~tvi~vtHd~~~~~~~~d 221 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK---GITFLIIEHRLDIVLNYID 221 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT---TCEEEEECSCCSTTGGGCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC---CCEEEEEecCHHHHHHhCC
Confidence 9999999999999999999999999999999999999999988643 6899999999998877666
No 29
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.8e-45 Score=380.73 Aligned_cols=195 Identities=29% Similarity=0.437 Sum_probs=166.6
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC----------
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE---------- 568 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~---------- 568 (709)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 3899999999963 479999999999999999999999999999999999999999999999999862
Q ss_pred CCH---HHHhcceEEEcccCccccc-CHHHHhccCC--CCCCC----HHHHHHHHHHHhhHHH-HHcCCCCcccccCCCC
Q 005203 569 VDI---KWLRGRIGFVGQEPKLFRM-DISSNISYGC--TQDIK----QQDIEWAAKQAYAHDF-IMSLPSGYETLVDDDL 637 (709)
Q Consensus 569 ~~~---~~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~--~~~~~----~e~i~~aa~~a~l~d~-I~~LP~GydT~vGe~~ 637 (709)
++. ..+|+.||||+|++.+|.. |++|||.++. ....+ ++++.++++..++.++ ..+.| .+
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~~ 153 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP---------VH 153 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG---------GG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCc---------cc
Confidence 443 3568899999999999977 9999998841 11122 3456777777777666 43332 36
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 638 LSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 638 LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++.++ |+|+|+|||+++.+..-+|
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~---g~tvi~vtHd~~~~~~~~d 221 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE---GKTMVVVTHEMGFARHVSS 221 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT---TCCEEEECSCHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999988643 6899999999998877666
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.2e-45 Score=370.65 Aligned_cols=187 Identities=24% Similarity=0.435 Sum_probs=161.0
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
..|+++||+++|+ + ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++. .+|+.
T Consensus 9 ~~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~ 79 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGK 79 (214)
T ss_dssp CEEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGG
T ss_pred ceEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCc
Confidence 3599999999996 3 6999999999999999999999999999999999999999999999999986 36889
Q ss_pred eEEEcccCccccc-CHHHHhccCCC--C-CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHH
Q 005203 578 IGFVGQEPKLFRM-DISSNISYGCT--Q-DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARA 651 (709)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~--~-~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARA 651 (709)
|+||+|++.+|.+ |++|||.++.. . ..+++++.++++..+ ++.. +. .+||||||||++||||
T Consensus 80 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~-~~~~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 80 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVE-----------VLDL-KKKLGELSQGTIRRVQLAST 147 (214)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTT-----------CCCT-TSBGGGSCHHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcC-----------CCcC-CCChhhCCHHHHHHHHHHHH
Confidence 9999999999987 99999988521 0 122566666666554 4444 33 4799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+++|++||||||||+||+++...+.+.|+++.++ ++|+|+|||+++.+...+|
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~---g~tiiivtHd~~~~~~~~d 201 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE---KGIVIISSREELSYCDVNE 201 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH---HSEEEEEESSCCTTSSEEE
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999887632 4899999999998776554
No 31
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5.8e-45 Score=383.23 Aligned_cols=193 Identities=24% Similarity=0.368 Sum_probs=162.8
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC--CCCHHHHhc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK--EVDIKWLRG 576 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~--~~~~~~lR~ 576 (709)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 4999999999963 47999999999999999999999999999999999999999999999999998 777888999
Q ss_pred ceEEEcccCcc-ccc--CHHHHhccCCCC------CCC---HHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHH
Q 005203 577 RIGFVGQEPKL-FRM--DISSNISYGCTQ------DIK---QQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQ 642 (709)
Q Consensus 577 ~I~~V~Qd~~L-F~g--TI~eNI~~g~~~------~~~---~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQ 642 (709)
+||||+|++.+ |.. |++|||.++... ..+ ++++.++++..++.++ ... .+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAK-----------AQQYIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGG-----------TTSBGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHH
Confidence 99999999875 555 999999986310 112 2344555555554332 222 4799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEE--EEEecChhhhhhhcC
Q 005203 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTV--LVIAHRLISTALSFD 708 (709)
Q Consensus 643 kQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~Tv--IiIAHRlsti~~~~~ 708 (709)
|||++|||||+++|++||||||||+||+++.+.+.+.|+++.++ |+|+ |+|||+++.+..-+|
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~---g~tv~~iivtHd~~~~~~~~d 231 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS---YPTLAMIYVTHFIEEITANFS 231 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH---CTTCEEEEEESCGGGCCTTCC
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC---CCEEEEEEEecCHHHHHHhCC
Confidence 99999999999999999999999999999999999999988643 5899 999999998876666
No 32
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.4e-44 Score=391.02 Aligned_cols=196 Identities=31% Similarity=0.487 Sum_probs=166.1
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC--CCHHHHhc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE--VDIKWLRG 576 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~--~~~~~lR~ 576 (709)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||+|+.+ .+....++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999963 579999999999999999999999999999999999999999999999999832 22345678
Q ss_pred ceEEEcccCcccc-cCHHHHhccCCCC-----CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 577 RIGFVGQEPKLFR-MDISSNISYGCTQ-----DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 577 ~I~~V~Qd~~LF~-gTI~eNI~~g~~~-----~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
.||||+|++.||. .|++|||.|+... ...++++.++++..++.++..+.| ..||||||||++|||
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---------~~LSGGq~QRValAr 151 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP---------HELSGGQQQRAALAR 151 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG---------GGSCHHHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHH
Confidence 8999999999996 5999999997320 112356777888887766554444 369999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||+.+|++|+||||||+||+.+...+.+.|.++.++ .|+|+|+|||+++.+..-+|
T Consensus 152 AL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~--~g~tvi~vTHd~~ea~~~aD 207 (359)
T 3fvq_A 152 ALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA--NGKSAVFVSHDREEALQYAD 207 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--TTCEEEEECCCHHHHHHHCS
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHCC
Confidence 999999999999999999999999999887665432 26899999999998876666
No 33
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.1e-44 Score=380.73 Aligned_cols=207 Identities=24% Similarity=0.391 Sum_probs=161.4
Q ss_pred HHHHHHhcCCCCccccccccccCCCCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 473 KVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 473 Rl~~il~~~~e~~~~~~~~~~~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
|+.++++.+++.. .. .......+.|+++||+|.| .++|+|+||+|++||++||+||||||||||+|+|+|++
T Consensus 17 ~~~~~~~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 17 GFGELFEKAKQNN-NN--RKTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp HHHHHHHHCC--------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred HHHHHhccccccc-cc--ccccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 6666766655422 11 1111223469999999963 36999999999999999999999999999999999999
Q ss_pred CCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccc
Q 005203 553 EPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETL 632 (709)
Q Consensus 553 ~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~ 632 (709)
+|++|+|.+|| +|+||+|++.+|.+|++|||. +. ..++.++.++++..++.+++..+|.+++|.
T Consensus 89 ~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl~-~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 152 (290)
T 2bbs_A 89 EPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENII-GV--SYDEYRYRSVIKACQLEEDISKFAEKDNIV 152 (290)
T ss_dssp CEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHHH-TT--CCCHHHHHHHHHHTTCHHHHHTSTTGGGCB
T ss_pred CCCCcEEEECC-------------EEEEEeCCCccCcccHHHHhh-Cc--ccchHHHHHHHHHhChHHHHHhccccccch
Confidence 99999999998 499999999999999999998 52 234556777888889999999999999999
Q ss_pred cCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 633 VDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVL-RAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 633 vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L-~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+++ .+||||||||++|||||+++|++||||||||+||+++++.+.+.+ +++.+ ++|+|+|||+++.+.. +|
T Consensus 153 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~----~~tviivtHd~~~~~~-~d 226 (290)
T 2bbs_A 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA----NKTRILVTSKMEHLKK-AD 226 (290)
T ss_dssp C----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTT----TSEEEEECCCHHHHHH-SS
T ss_pred hcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhC----CCEEEEEecCHHHHHc-CC
Confidence 998 599999999999999999999999999999999999999999874 44432 5899999999998764 65
No 34
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.5e-44 Score=372.42 Aligned_cols=189 Identities=21% Similarity=0.290 Sum_probs=167.3
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+|+ ++|+|+||+|++||++||+||||||||||+|+|+|+++|+ |+|.+||.++.+++...+|++||
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 899999986 4899999999999999999999999999999999999999 99999999998888889999999
Q ss_pred EEcccCccccc-CHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCC-
Q 005203 580 FVGQEPKLFRM-DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT- 657 (709)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~- 657 (709)
||+|++.+|.+ |++||+.++.....+++++.++++..++.++..+.| ..||||||||++|||||+++|+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qrv~lAraL~~~p~~ 147 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST---------NQLSGGEWQRVRLAAVVLQITPQ 147 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBG---------GGCCHHHHHHHHHHHHHHHHCTT
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHHcCCCc
Confidence 99999999875 999999987421224677888888887765433211 4799999999999999999999
Q ss_pred ------EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 658 ------ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 658 ------ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|+||||||+||+++++.+.+.|+++.++ |+|+|+|||+++.+..-+|
T Consensus 148 ~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~---g~tviivtHd~~~~~~~~d 201 (249)
T 2qi9_C 148 ANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ---GLAIVMSSHDLNHTLRHAH 201 (249)
T ss_dssp TCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHCS
T ss_pred CCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999988643 5899999999998877666
No 35
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.9e-44 Score=392.52 Aligned_cols=194 Identities=27% Similarity=0.450 Sum_probs=166.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++...+.. ++.|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999973 5799999999999999999999999999999999999999999999999999887765 5789
Q ss_pred EEEcccCccccc-CHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 579 GFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
|||+|++.||.. |++|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||++|||||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p---------~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTL 148 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hHCCHHHHHHHHHHHHH
Confidence 999999999965 99999998621 1122 345666777776655444433 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+++|++||||||||+||+.+...+.+.|+++.++ .|+|+|+|||+++.+..-+|
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~~aD 202 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLAD 202 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEECSCHHHHHHHCS
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCC
Confidence 9999999999999999999999999999988542 25899999999998876665
No 36
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.7e-44 Score=372.61 Aligned_cols=194 Identities=26% Similarity=0.324 Sum_probs=155.5
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCcceEEECCEeCCCCCHHHH-hc
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL--YEPTNGQILIDGFPIKEVDIKWL-RG 576 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl--~~p~~G~I~idG~di~~~~~~~l-R~ 576 (709)
|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+|+|+|+ ++|++|+|.+||.|+.+.+.... |.
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999963 4799999999999999999999999999999999999 89999999999999988877655 55
Q ss_pred ceEEEcccCccccc-CHHHHhccCCC----CCCC----HHHHHHHHHHHhhH-HHHHcCCCCcccccCCCC-CChHHHHH
Q 005203 577 RIGFVGQEPKLFRM-DISSNISYGCT----QDIK----QQDIEWAAKQAYAH-DFIMSLPSGYETLVDDDL-LSGGQKQR 645 (709)
Q Consensus 577 ~I~~V~Qd~~LF~g-TI~eNI~~g~~----~~~~----~e~i~~aa~~a~l~-d~I~~LP~GydT~vGe~~-LSGGQkQR 645 (709)
.++||+|++.+|.+ |++||+.++.. ...+ .+++.++++..++. +.. +..+ .. ||||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~~~--~~~LSgGqkQr 151 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL-------SRYL--NEGFSGGEKKR 151 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG-------GSBT--TCC----HHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHh-------cCCc--ccCCCHHHHHH
Confidence 69999999999986 99999986421 0111 23444555554442 221 1222 34 99999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhh-cC
Q 005203 646 IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALS-FD 708 (709)
Q Consensus 646 IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~-~~ 708 (709)
++|||||+++|++||||||||+||+++++.+.+.|+++.+. |+|+|+|||+++.+... +|
T Consensus 152 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~---g~tvi~vtHd~~~~~~~~~d 212 (250)
T 2d2e_A 152 NEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGP---NFGALVITHYQRILNYIQPD 212 (250)
T ss_dssp HHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCST---TCEEEEECSSSGGGGTSCCS
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhc---CCEEEEEecCHHHHHHhcCC
Confidence 99999999999999999999999999999999999988532 68999999999987764 45
No 37
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=6.7e-44 Score=385.72 Aligned_cols=196 Identities=28% Similarity=0.466 Sum_probs=166.8
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
..|+++||+++|++ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++.+.+. .|+.
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 35999999999942 2469999999999999999999999999999999999999999999999999987653 4788
Q ss_pred eEEEcccCccccc-CHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005203 578 IGFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (709)
Q Consensus 578 I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (709)
||||+|++.+|.. |++|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||++||||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---------~~LSGGq~QRvalArA 159 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP---------HELSGGQQQRVALARA 159 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc---------ccCCHHHHHHHHHHHH
Confidence 9999999999975 99999998621 0112 356677777777766544444 3699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+++|++|+||||||+||+++.+.+.+.|+++.++ .|+|+|+|||+++.+..-+|
T Consensus 160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~ad 214 (355)
T 1z47_A 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDE--MGVTSVFVTHDQEEALEVAD 214 (355)
T ss_dssp HTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCS
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEECCCHHHHHHhCC
Confidence 99999999999999999999999999999887532 15899999999998876666
No 38
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-43 Score=384.38 Aligned_cols=194 Identities=27% Similarity=0.460 Sum_probs=167.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||+++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999963 4699999999999999999999999999999999999999999999999999877643 6789
Q ss_pred EEEcccCccccc-CHHHHhccCCC-CCC----CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 579 GFVGQEPKLFRM-DISSNISYGCT-QDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
|||+|++.+|.. |++|||.|+.. ... .++++.++++..++.++..+.| .+||||||||++|||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP---------TQLSGGQQQRVALARAL 148 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 999999999965 99999998732 011 1356777888877766655544 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+++|++|+||||||+||+++.+.+.+.|+++.++ .|.|+|+|||+++.+..-+|
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~~~~~ad 202 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE--LGITSVYVTHDQAEAMTMAS 202 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCS
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCC
Confidence 9999999999999999999999999999887532 15899999999998766665
No 39
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=8.4e-44 Score=366.55 Aligned_cols=189 Identities=29% Similarity=0.464 Sum_probs=157.8
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ +|+|+||+|++ |++||+||||||||||+|+|+|+++|++|+|.+||+++.+.. .+|++||
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999997643 4578899
Q ss_pred EEcccCccccc-CHHHHhccCCCCCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcc
Q 005203 580 FVGQEPKLFRM-DISSNISYGCTQDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr 654 (709)
||+|++.+|.. |++||+.++.. ... ++++.++++..++.++..+.| .+||||||||++|||||++
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLR-NVERVERDRRVREMAEKLGIAHLLDRKP---------ARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCT-TSCHHHHHHHHHHHHHTTTCTTTTTCCG---------GGSCHHHHHHHHHHHHHTT
T ss_pred EEcCCCccCCCCcHHHHHHHHHH-HcCCchHHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHHHHc
Confidence 99999999987 99999998742 111 234444544444433222111 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 655 DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++||||||||+||+++.+.+.+.|+++.++ .|+|+|+|||+++.+..-+|
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~d 195 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE--FDVPILHVTHDLIEAAMLAD 195 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHHHHHHCS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999887531 14899999999998877666
No 40
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=7e-44 Score=386.84 Aligned_cols=194 Identities=29% Similarity=0.480 Sum_probs=164.8
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||+++.+.+.. ++.|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999963 4699999999999999999999999999999999999999999999999999877653 6789
Q ss_pred EEEcccCccccc-CHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 579 GFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 579 ~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
|||+|++.+|.. |++|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||++|||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP---------WQLSGGQQQRVAIARAL 148 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 999999999975 99999998621 0112 345666777766655444333 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+++|++|+||||||+||+++...+.+.|+++.++ .|+|+|+|||+++.+..-+|
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~ad 202 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKE--LGITTVYVTHDQAEALAMAD 202 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCS
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCC
Confidence 9999999999999999999999999999887532 15899999999998776665
No 41
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.4e-43 Score=382.87 Aligned_cols=192 Identities=29% Similarity=0.500 Sum_probs=165.4
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
|+++||+++|++ . +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||+++.+.+. .|++||
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 789999999962 5 9999999999999999999999999999999999999999999999999987553 578899
Q ss_pred EEcccCccccc-CHHHHhccCCC--CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCC
Q 005203 580 FVGQEPKLFRM-DISSNISYGCT--QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (709)
Q Consensus 580 ~V~Qd~~LF~g-TI~eNI~~g~~--~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p 656 (709)
||+|++.+|.. |++|||.|+.. ....++++.++++..++.++..+.| .+||||||||++|||||+++|
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---------~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP---------LTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG---------GGSCHHHHHHHHHHHHTTSCC
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHHHHHcCC
Confidence 99999999976 99999998621 0112377788888877765544433 369999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 657 TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 657 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|+||||||+||+++.+.+.+.|+++.++ .|+|+|+|||+++.+..-+|
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~--~g~tii~vTHd~~~~~~~ad 196 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKK--NKLTVLHITHDQTEARIMAD 196 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHCS
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999988542 25899999999988766555
No 42
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=7.9e-44 Score=385.87 Aligned_cols=196 Identities=31% Similarity=0.443 Sum_probs=166.4
Q ss_pred cEEEEEEEEEcCCCCCCc--cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC---HHH
Q 005203 499 RIDFVDVSFRYSSREMVP--VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD---IKW 573 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~--vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~---~~~ 573 (709)
.|+++||+++|++ .+ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||+++.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999963 46 999999999999999999999999999999999999999999999999986521 334
Q ss_pred HhcceEEEcccCccccc-CHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005203 574 LRGRIGFVGQEPKLFRM-DISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (709)
Q Consensus 574 lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (709)
.|++||||+|++.+|.. |++|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||++
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---------~~LSGGq~QRva 150 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP---------RELSGAQQQRVA 150 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHH
Confidence 57899999999999975 99999998732 1122 345677777777766544443 369999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||+++|++|+||||||+||+++...+.+.|+++.++ .|+|+|+|||+++.+..-+|
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~~~~~ad 209 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR--LGVTLLVVSHDPADIFAIAD 209 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCS
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999999887532 15899999999998876666
No 43
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.5e-43 Score=383.85 Aligned_cols=194 Identities=26% Similarity=0.487 Sum_probs=161.5
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||+++.+.+.. ++.|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999963 4699999999999999999999999999999999999999999999999999877643 6789
Q ss_pred EEEcccCcccc-cCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 579 GFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 579 ~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
|||+|++.||. .|++|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||++|||||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP---------AQLSGGQRQRVAVARAI 156 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT---------TTCCSSCHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 599999999742 1122 245667777777766555444 36999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+++|++|+||||||+||+++.+.+.+.|+++.++ .|.|+|+|||+++.+..-+|
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~ad 210 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK--LKVTTIYVTHDQVEAMTMGD 210 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCS
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999887532 15899999999998776665
No 44
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=4.1e-43 Score=364.28 Aligned_cols=184 Identities=28% Similarity=0.363 Sum_probs=155.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|. +++.|
T Consensus 4 ~l~i~~l~~~y~~~--~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETTT--TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCCC--CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 38999999999722 4799999999999999999999999999999999999999999998 46789
Q ss_pred EEEcccCccc-ccCHHHHhccCCCC---------CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 579 GFVGQEPKLF-RMDISSNISYGCTQ---------DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 579 ~~V~Qd~~LF-~gTI~eNI~~g~~~---------~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
|||+|++.+| ..|++|||.++... ..+++++.++++..++.++..+.| .+||||||||++|
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qrv~l 139 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF---------TSLSGGQRQLILI 139 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG---------GGSCHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh---------hhCCHHHHHHHHH
Confidence 9999999988 77999999986310 112345666777666655433211 4799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||+++|++||||||||+||+++.+.+.+.|+++.++ .|+|+|+|||+++.+..-+|
T Consensus 140 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~d 197 (253)
T 2nq2_C 140 ARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS--QNMTVVFTTHQPNQVVAIAN 197 (253)
T ss_dssp HHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHT--SCCEEEEEESCHHHHHHHCS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCC
Confidence 99999999999999999999999999999999988642 25899999999998876666
No 45
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.5e-43 Score=383.12 Aligned_cols=194 Identities=28% Similarity=0.442 Sum_probs=165.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC------CCHH
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE------VDIK 572 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~------~~~~ 572 (709)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||+++.+ .+.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 3899999999963 479999999999999999999999999999999999999999999999999865 443
Q ss_pred HHhcceEEEcccCcccc-cCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHH
Q 005203 573 WLRGRIGFVGQEPKLFR-MDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI 646 (709)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRI 646 (709)
.++.||||+|++.||. .|++|||.|+.. ...+ ++++.++++..++.++..+.| .+||||||||+
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRv 148 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP---------RELSGGQRQRV 148 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG---------GGSCHHHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc---------ccCCHHHHHHH
Confidence 3678999999999995 699999998621 0112 345677777777766544443 36999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 647 aLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|||||+++|++|+||||||+||+++...+.+.|+++.++ .|.|+|+|||+++.+..-+|
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~ad 208 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ--LGVTTIYVTHDQVEAMTMGD 208 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCS
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEECCCHHHHHHhCC
Confidence 9999999999999999999999999999999999887532 15899999999998776665
No 46
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.1e-42 Score=360.48 Aligned_cols=197 Identities=24% Similarity=0.290 Sum_probs=158.9
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCcceEEECCEeCCCCCHHHH-h
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL--YEPTNGQILIDGFPIKEVDIKWL-R 575 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl--~~p~~G~I~idG~di~~~~~~~l-R 575 (709)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+|+|+|+ ++|++|+|.+||.|+...+.... |
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999963 5799999999999999999999999999999999999 67999999999999988776665 4
Q ss_pred cceEEEcccCccccc-CHHHHhccCC--------CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC---C-CCChHH
Q 005203 576 GRIGFVGQEPKLFRM-DISSNISYGC--------TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD---D-LLSGGQ 642 (709)
Q Consensus 576 ~~I~~V~Qd~~LF~g-TI~eNI~~g~--------~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe---~-~LSGGQ 642 (709)
..|+||+|++.+|.+ |+.||+.++. .+..+.++..+ .+.+.++.+ |+++...+ . +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 569999999999876 7999986531 00123322211 122333332 44432222 2 499999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhh-cC
Q 005203 643 KQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALS-FD 708 (709)
Q Consensus 643 kQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~-~~ 708 (709)
|||++|||||+++|++||||||||+||+++.+.+.+.|+++.++ |+|+|+|||+++.+... +|
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~---g~tviivtHd~~~~~~~~~d 233 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG---KRSFIIVTHYQRILDYIKPD 233 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCS---SCEEEEECSSGGGGGTSCCS
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc---CCEEEEEeeCHHHHHhhcCC
Confidence 99999999999999999999999999999999999999887532 68999999999887653 55
No 47
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.4e-43 Score=363.64 Aligned_cols=188 Identities=23% Similarity=0.308 Sum_probs=159.5
Q ss_pred EEEEEEEEEcCCC-CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 500 IDFVDVSFRYSSR-EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 500 I~~~nVsF~Y~~~-~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
|+++||+++|++. ...++|+|+||+|+ ||++||+||||||||||+|+|+|++ |++|+|.+||.++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 01469999999999 9999999999999999999999999 9999999999998764 33 7889
Q ss_pred E-EEcccCcccccCHHHHhccCCC-CCCCHHHHHHHHHHHhhH-HHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccC
Q 005203 579 G-FVGQEPKLFRMDISSNISYGCT-QDIKQQDIEWAAKQAYAH-DFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 579 ~-~V~Qd~~LF~gTI~eNI~~g~~-~~~~~e~i~~aa~~a~l~-d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~ 655 (709)
+ ||+|++.+ ..|++||+.++.. .+.+++++.++++..++. +...+.| .+||||||||++|||||+++
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---------~~LSgGqkqRv~lAraL~~~ 146 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKL---------YKLSAGQSVLVRTSLALASQ 146 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBG---------GGSCHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCCh---------hhCCHHHHHHHHHHHHHHhC
Confidence 9 99999999 9999999998631 023466777777766554 3222111 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 656 PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|+||||||+||+++.+.+.+.|+++. .|+|+|||+++.+..-+|
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~L~~~~------~tviivtHd~~~~~~~~d 193 (263)
T 2pjz_A 147 PEIVGLDEPFENVDAARRHVISRYIKEYG------KEGILVTHELDMLNLYKE 193 (263)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHSC------SEEEEEESCGGGGGGCTT
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHhc------CcEEEEEcCHHHHHHhcC
Confidence 99999999999999999999999998874 299999999998877666
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.5e-34 Score=329.56 Aligned_cols=181 Identities=19% Similarity=0.308 Sum_probs=150.1
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.++++|++++|.+ ..|++.|++|++||++||+||||||||||+|+|+|+++|++|+|.++| ..|
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 5899999999963 468888999999999999999999999999999999999999999765 358
Q ss_pred EEEcccCcc-cccCHHHHhccCCCCC--CCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhc
Q 005203 579 GFVGQEPKL-FRMDISSNISYGCTQD--IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 579 ~~V~Qd~~L-F~gTI~eNI~~g~~~~--~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALl 653 (709)
+|++|+... |.+|+.||+.+..... ...+.+.++++..++.+ .... .+||||||||++|||||.
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHR-----------LLESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGG-----------CTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHH-----------HhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999764 5899999998643211 22344445555544433 2222 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++|++|||||||++||+.+...|.+.|+++.++ .++|+|+|||+++.+..-||
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~--~g~tvi~vsHdl~~~~~~aD 454 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE--RKAVTFIIDHDLSIHDYIAD 454 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCS
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999987532 25899999999998887776
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.3e-34 Score=330.84 Aligned_cols=180 Identities=28% Similarity=0.357 Sum_probs=147.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ +..|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 4899999999963 3699999999999999999999999999999999999999999986 2469
Q ss_pred EEEcccCcc-cccCHHHHhccC-CCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcc
Q 005203 579 GFVGQEPKL-FRMDISSNISYG-CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 579 ~~V~Qd~~L-F~gTI~eNI~~g-~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr 654 (709)
|||+|++.+ ++.|+.||+... .....+.+++.++++..++.+ .... ..||||||||++|||||.+
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIID-----------LYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTT-----------TTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCch-----------HhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 678999998764 110012334444554444322 2222 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 655 DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++||||||||+||+++...+.+.|+++.++ .|.|+|+|||+++.+..-+|
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vsHd~~~~~~~ad 540 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDVLMIDYVSD 540 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCS
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999987531 25899999999998877666
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.2e-34 Score=334.69 Aligned_cols=191 Identities=26% Similarity=0.288 Sum_probs=152.1
Q ss_pred cEEE--------EEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE---------EE
Q 005203 499 RIDF--------VDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI---------LI 561 (709)
Q Consensus 499 ~I~~--------~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I---------~i 561 (709)
.|++ +||+++|++. ..+|+|+| +|++||++||+||||||||||+|+|+|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 3888 8999999742 35899999 999999999999999999999999999999999996 45
Q ss_pred CCEeCCCCCHH--HHhcceEEEcccC----cccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC
Q 005203 562 DGFPIKEVDIK--WLRGRIGFVGQEP----KLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD 635 (709)
Q Consensus 562 dG~di~~~~~~--~lR~~I~~V~Qd~----~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe 635 (709)
+|.++.++... ..+..+++++|+. .++.+|+.||+...+ ..+++.++++..++.+...+. +
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~----~~~~~~~~L~~lgL~~~~~~~-------~-- 226 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD----EVGKFEEVVKELELENVLDRE-------L-- 226 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC----CSSCHHHHHHHTTCTTGGGSB-------G--
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH----HHHHHHHHHHHcCCCchhCCC-------h--
Confidence 66655432111 1234688998874 345679999997532 134566677776654432221 1
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 636 DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 636 ~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
..||||||||++|||||+++|++||||||||+||+++...+.+.|+++.+. |.|+|+|+|+++.+..-+|
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~---g~tvIivsHdl~~~~~~ad 296 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE---GKAVLVVEHDLAVLDYLSD 296 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHCS
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc---CCEEEEEecChHHHHhhCC
Confidence 369999999999999999999999999999999999999999999988643 6899999999998776555
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.3e-34 Score=328.57 Aligned_cols=180 Identities=28% Similarity=0.366 Sum_probs=145.9
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ +..|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 4899999999963 3699999999999999999999999999999999999999999985 2469
Q ss_pred EEEcccCcc-cccCHHHHhccC-CCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhcc
Q 005203 579 GFVGQEPKL-FRMDISSNISYG-CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 579 ~~V~Qd~~L-F~gTI~eNI~~g-~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr 654 (709)
|||+|++.+ +..|+.||+... .....+.+++.++++.. |+...... ..||||||||++|||||++
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL-----------GIIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT-----------TCGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 678999998753 11001122233332222 34333333 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 655 DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+|++|||||||++||..+...|.+.|+++.++ .|.|+|+|||+++.+..-||
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~--~g~tvi~vsHd~~~~~~~~d 470 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDVLMIDYVSD 470 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999987421 14899999999999887776
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=7e-34 Score=339.24 Aligned_cols=184 Identities=25% Similarity=0.358 Sum_probs=139.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
-|+++||+|+|++. ..++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|. ..|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 39999999999753 257999999999999999999999999999999999999999999999862 147
Q ss_pred EEEcccCcc-----cccCHHH-----------------------------------------------------------
Q 005203 579 GFVGQEPKL-----FRMDISS----------------------------------------------------------- 594 (709)
Q Consensus 579 ~~V~Qd~~L-----F~gTI~e----------------------------------------------------------- 594 (709)
|||+|++.. +..|++|
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 777776521 1233333
Q ss_pred -------HhccCCC----------------------------------------CCCCHHHHHHHHHHHhhHHHH-HcCC
Q 005203 595 -------NISYGCT----------------------------------------QDIKQQDIEWAAKQAYAHDFI-MSLP 626 (709)
Q Consensus 595 -------NI~~g~~----------------------------------------~~~~~e~i~~aa~~a~l~d~I-~~LP 626 (709)
||.++.. ....++++.++++..|+.+.. ..-
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~- 897 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS- 897 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS-
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC-
Confidence 4333210 001123333444444432211 110
Q ss_pred CCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhh
Q 005203 627 SGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALS 706 (709)
Q Consensus 627 ~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~ 706 (709)
. -.+||||||||++|||||+++|++|||||||++||+++...+.+.|+++ +.|+|+|||+++.+..-
T Consensus 898 -----~--~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~------g~tVIiISHD~e~v~~l 964 (986)
T 2iw3_A 898 -----R--IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF------EGGVIIITHSAEFTKNL 964 (986)
T ss_dssp -----C--GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC------SSEEEEECSCHHHHTTT
T ss_pred -----C--ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh------CCEEEEEECCHHHHHHh
Confidence 0 1379999999999999999999999999999999999999999999765 36999999999988766
Q ss_pred cC
Q 005203 707 FD 708 (709)
Q Consensus 707 ~~ 708 (709)
+|
T Consensus 965 ~D 966 (986)
T 2iw3_A 965 TE 966 (986)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.8e-34 Score=329.42 Aligned_cols=190 Identities=28% Similarity=0.307 Sum_probs=147.7
Q ss_pred EEE-EEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE---------EECCEeCCCC
Q 005203 500 IDF-VDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI---------LIDGFPIKEV 569 (709)
Q Consensus 500 I~~-~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I---------~idG~di~~~ 569 (709)
.++ +||+++|++. ..+++|+| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 455 6999999742 36899999 999999999999999999999999999999999996 4566554322
Q ss_pred CHH--HHhcceEEEcccCcc----cccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHH
Q 005203 570 DIK--WLRGRIGFVGQEPKL----FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQK 643 (709)
Q Consensus 570 ~~~--~lR~~I~~V~Qd~~L----F~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQk 643 (709)
... ..+..+++++|+..+ +.+|+.||+.... ..+++.++++..++.+.. +..+ ..||||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~----~~~~~~~~l~~lgl~~~~-------~~~~--~~LSgGek 164 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD----ETGKLEEVVKALELENVL-------EREI--QHLSGGEL 164 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC----SSSCHHHHHHHTTCTTTT-------TSBG--GGCCHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh----HHHHHHHHHHHcCCChhh-------hCCh--hhCCHHHH
Confidence 111 123468899997544 3469999986431 134566676666653221 1111 37999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+.+|++||||||||+||+++...+.+.|+++.+. |+|+|+|||+++.+..-+|
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~---g~tvi~vsHd~~~~~~~~d 226 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE---GKSVLVVEHDLAVLDYLSD 226 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT---TCEEEEECSCHHHHHHHCS
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999999999988643 6899999999998877666
No 54
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=2.5e-37 Score=327.86 Aligned_cols=196 Identities=12% Similarity=0.198 Sum_probs=165.8
Q ss_pred HhCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccCCCCcEEEEEEEEEcC
Q 005203 431 MRGNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQRLMGRIDFVDVSFRYS 510 (709)
Q Consensus 431 ~~G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~~~~~~~~~~~I~~~nVsF~Y~ 510 (709)
..+..+-+.+.||+.+..+. .++..++..+..+..+..+.+|+.++++.+++... ... ..+...+.|+++||+|+|+
T Consensus 36 a~~~~~~~n~~afl~~~~q~-~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~-~~~-~~~~~~~~i~~~~vs~~y~ 112 (305)
T 2v9p_A 36 ALAAGSDSNARAFLATNSQA-KHVKDCATMVRHYLRAETQALSMPAYIKARCKLAT-GEG-SWKSILTFFNYQNIELITF 112 (305)
T ss_dssp HHTTTTCHHHHHHTTCTTHH-HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC-SSC-CTHHHHHHHHHTTCCHHHH
T ss_pred HHhcCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CCC-cccccCCeEEEEEEEEEcC
Confidence 44667778999999998774 78889999999999999999999999987654321 111 1111223589999999996
Q ss_pred CCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCccccc
Q 005203 511 SREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRM 590 (709)
Q Consensus 511 ~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~g 590 (709)
.++|+|+||+|++||++|||||||||||||+++|+|+| +|+| +++|+|++.+|.+
T Consensus 113 ----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ 167 (305)
T 2v9p_A 113 ----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLA 167 (305)
T ss_dssp ----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGG
T ss_pred ----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccc
Confidence 36999999999999999999999999999999999999 8999 4578999999999
Q ss_pred CHHH-HhccCCCCCCCHHHHHHHHHHHhhHHHHHc-CCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 005203 591 DISS-NISYGCTQDIKQQDIEWAAKQAYAHDFIMS-LPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSAL 668 (709)
Q Consensus 591 TI~e-NI~~g~~~~~~~e~i~~aa~~a~l~d~I~~-LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaL 668 (709)
|++| ||.++ + ++++ +++++|.. ||+||| ..+|||||||| ||||+++|+||| ||+|
T Consensus 168 ti~~~ni~~~-~-~~~~----------~~~~~i~~~L~~gld----g~~LSgGqkQR---ARAll~~p~iLl----Ts~L 224 (305)
T 2v9p_A 168 SLADTRAALV-D-DATH----------ACWRYFDTYLRNALD----GYPVSIDRKHK---AAVQIKAPPLLV----TSNI 224 (305)
T ss_dssp GGTTCSCEEE-E-EECH----------HHHHHHHHTTTGGGG----TCCEECCCSSC---CCCEECCCCEEE----EESS
T ss_pred cHHHHhhccC-c-cccH----------HHHHHHHHHhHccCC----ccCcCHHHHHH---HHHHhCCCCEEE----ECCC
Confidence 9998 99998 4 5553 46788888 999999 45899999999 999999999999 9999
Q ss_pred CHHHHHHHH
Q 005203 669 DAESEHNIK 677 (709)
Q Consensus 669 D~~tE~~I~ 677 (709)
|+++|+.|.
T Consensus 225 D~~~~~~i~ 233 (305)
T 2v9p_A 225 DVQAEDRYL 233 (305)
T ss_dssp CSTTCGGGG
T ss_pred CHHHHHHHH
Confidence 999999884
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.8e-32 Score=310.67 Aligned_cols=180 Identities=26% Similarity=0.319 Sum_probs=144.6
Q ss_pred EEEEEEcCCCCCCccceeeeEEecCC-----cEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 503 VDVSFRYSSREMVPVLQHVNISVNPG-----EVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 503 ~nVsF~Y~~~~~~~vL~~lsl~I~~G-----e~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
++++|+|++. ..+++|+||++++| |++||+||||||||||+++|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 6789999853 46899999999999 8899999999999999999999999999972 21 346
Q ss_pred eEEEcccCc-ccccCHHHHhccCCC-CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccC
Q 005203 578 IGFVGQEPK-LFRMDISSNISYGCT-QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 578 I~~V~Qd~~-LF~gTI~eNI~~g~~-~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~ 655 (709)
++|++|+.. .|.+|++||+..... ...+.+...++++..++.+...+.| ..||||||||++|||||..+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---------~~LSGGqkQRv~iAraL~~~ 485 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEV---------QHLSGGELQRVAIVLALGIP 485 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBS---------SSCCHHHHHHHHHHHHTTSC
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCCh---------hhCCHHHHHHHHHHHHHHhC
Confidence 999999965 578999999864211 1234555556666665533211111 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 656 PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|||||||++||+.+...+.+.|+++.++ .|+|+|+|||+++.+..-+|
T Consensus 486 p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~--~g~tviivtHdl~~~~~~aD 536 (608)
T 3j16_B 486 ADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NKKTAFIVEHDFIMATYLAD 536 (608)
T ss_dssp CSEEEECCTTTTCCHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999887421 25899999999998877665
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.8e-32 Score=312.42 Aligned_cols=188 Identities=23% Similarity=0.340 Sum_probs=144.4
Q ss_pred EEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE-----------EECCEeCCCCCHH
Q 005203 504 DVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI-----------LIDGFPIKEVDIK 572 (709)
Q Consensus 504 nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I-----------~idG~di~~~~~~ 572 (709)
|++++|.++ ...|++++ ++++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 568999753 45788877 699999999999999999999999999999999998 3444444333233
Q ss_pred HHhcceEE--EcccCc----cccc---CHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHH
Q 005203 573 WLRGRIGF--VGQEPK----LFRM---DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQK 643 (709)
Q Consensus 573 ~lR~~I~~--V~Qd~~----LF~g---TI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQk 643 (709)
.+++.+.. .+|... .+.+ ++.+++.... ..+++++.++++..++.+...+.| ..||||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGe~ 227 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM--EKSPEDVKRYIKILQLENVLKRDI---------EKLSGGEL 227 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC--CSCHHHHHHHHHHHTCTGGGGSCT---------TTCCHHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh--hhHHHHHHHHHHHcCCcchhCCCh---------HHCCHHHH
Confidence 33444432 233221 2222 5677776542 345678888888888765544333 36999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 644 QRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||++|||||+++|++||||||||+||+++...+.+.|+++.+. |+|+|+|+|+++.+..-+|
T Consensus 228 Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~---g~tvi~vtHdl~~~~~~~d 289 (608)
T 3j16_B 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP---TKYVICVEHDLSVLDYLSD 289 (608)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTT---TCEEEEECSCHHHHHHHCS
T ss_pred HHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999999999999999988653 6899999999998877665
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=5.1e-32 Score=308.72 Aligned_cols=185 Identities=21% Similarity=0.312 Sum_probs=144.7
Q ss_pred EEEEEEcCCCCCCccceeeeEEec-CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE-----------EECCEeCCCCC
Q 005203 503 VDVSFRYSSREMVPVLQHVNISVN-PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI-----------LIDGFPIKEVD 570 (709)
Q Consensus 503 ~nVsF~Y~~~~~~~vL~~lsl~I~-~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I-----------~idG~di~~~~ 570 (709)
++++.+|..+ -++-..|.++ +||++||+||||||||||+|+|+|+++|++|+| .++|.++..+.
T Consensus 3 ~~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~ 78 (538)
T 3ozx_A 3 GEVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYF 78 (538)
T ss_dssp CCEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHH
T ss_pred CCCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHH
Confidence 3678899753 3666666666 899999999999999999999999999999999 67787764322
Q ss_pred HHHH------hcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHH
Q 005203 571 IKWL------RGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQ 644 (709)
Q Consensus 571 ~~~l------R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQ 644 (709)
.... ...+.++.|.+.++.+|++|++...+. .+++.++++..++.+.. |..+ ..|||||||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~----~~~~~~~l~~l~l~~~~-------~~~~--~~LSgGe~Q 145 (538)
T 3ozx_A 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE----RGKKDEVKELLNMTNLW-------NKDA--NILSGGGLQ 145 (538)
T ss_dssp HHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC----SSCHHHHHHHTTCGGGT-------TSBG--GGCCHHHHH
T ss_pred HHHhhcccchhhccchhhhhhhhccCcHHHHhhcchh----HHHHHHHHHHcCCchhh-------cCCh--hhCCHHHHH
Confidence 2211 223555667777888999998864422 34556666666654321 1111 479999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|||||+++|++||||||||+||+++...+.+.|+++.+ ++|+|+|+|+++.+...+|
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~----g~tii~vsHdl~~~~~~~d 205 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK----NKYVIVVDHDLIVLDYLTD 205 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT----TSEEEEECSCHHHHHHHCS
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC----CCEEEEEEeChHHHHhhCC
Confidence 99999999999999999999999999999999999999853 5899999999998877776
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=5.2e-31 Score=309.03 Aligned_cols=181 Identities=24% Similarity=0.389 Sum_probs=115.7
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHH---------------------HHHhcCCCCC-------cceEEECCEeC
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLV---------------------NLLLRLYEPT-------NGQILIDGFPI 566 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLl---------------------kLLlgl~~p~-------~G~I~idG~di 566 (709)
.++|+||||+|++||++||+||||||||||+ +++.|+..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 5699999999999999999999999999998 9999999999 56667777665
Q ss_pred CCCCHHHHhcceEEEcccCccc--------------------ccCHHHHhccCCCCCCCH--H-----HHHHHHHHHhhH
Q 005203 567 KEVDIKWLRGRIGFVGQEPKLF--------------------RMDISSNISYGCTQDIKQ--Q-----DIEWAAKQAYAH 619 (709)
Q Consensus 567 ~~~~~~~lR~~I~~V~Qd~~LF--------------------~gTI~eNI~~g~~~~~~~--e-----~i~~aa~~a~l~ 619 (709)
.. ..|+.+++|+|.+.++ ..|+.||+.++......+ . .+.++.+..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 43 2356677777765543 458999998852101111 1 111112222
Q ss_pred HHHHcCCCCccccc-CC--CCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEE
Q 005203 620 DFIMSLPSGYETLV-DD--DLLSGGQKQRIAIARAILRDPT--ILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVL 694 (709)
Q Consensus 620 d~I~~LP~GydT~v-Ge--~~LSGGQkQRIaLARALlr~p~--ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvI 694 (709)
+.+..+ |++... .. ..||||||||++|||||+.+|+ +||||||||+||+++...+.+.|+++++. |+|+|
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~---g~tvi 258 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL---GNTLI 258 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT---TCEEE
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc---CCEEE
Confidence 223333 333221 22 4799999999999999999998 99999999999999999999999998643 68999
Q ss_pred EEecChhhhhhhcC
Q 005203 695 VIAHRLISTALSFD 708 (709)
Q Consensus 695 iIAHRlsti~~~~~ 708 (709)
+|||+++.+.. +|
T Consensus 259 ~vtHd~~~~~~-~d 271 (670)
T 3ux8_A 259 VVEHDEDTMLA-AD 271 (670)
T ss_dssp EECCCHHHHHH-CS
T ss_pred EEeCCHHHHhh-CC
Confidence 99999997654 55
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=7.6e-30 Score=304.59 Aligned_cols=176 Identities=26% Similarity=0.340 Sum_probs=145.2
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
.+...|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+| |+| +|.+... +..+
T Consensus 435 ~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 435 DLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred eeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 5888899999973 479999999999999999999999999999999996 665 6655421 1247
Q ss_pred EEEcccC-cc-cccCHHHHhccCCCCCCCHHHHHHHHHHHhh-HHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccC
Q 005203 579 GFVGQEP-KL-FRMDISSNISYGCTQDIKQQDIEWAAKQAYA-HDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 579 ~~V~Qd~-~L-F~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l-~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~ 655 (709)
+|++|++ .+ ...|+.||+.+... .. ++++.++++..|+ .+...+.+ ..||||||||++|||||+.+
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~-~~-~~~v~~~L~~lgL~~~~~~~~~---------~~LSGGqkQRvaLArAL~~~ 566 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGV-GT-KEAIKDKLIEFGFTDEMIAMPI---------SALSGGWKMKLALARAVLRN 566 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCS-SC-HHHHHHHHHHTTCCHHHHHSBG---------GGCCHHHHHHHHHHHHHHTT
T ss_pred EEEcccccccccCCcHHHHHHHhhc-CH-HHHHHHHHHHcCCChhhhcCCc---------ccCCHHHHHHHHHHHHHhcC
Confidence 9999985 34 46699999986211 22 7788888888888 34444322 35999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 656 PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 656 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++||||||||+||+++.+.+.+.|++ . |+|+|+|||+++.+..-+|
T Consensus 567 P~lLLLDEPTs~LD~~~~~~l~~~L~~-~-----g~tvIivSHdl~~l~~~ad 613 (986)
T 2iw3_A 567 ADILLLDEPTNHLDTVNVAWLVNYLNT-C-----GITSITISHDSVFLDNVCE 613 (986)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHH-S-----CSEEEEECSCHHHHHHHCS
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHh-C-----CCEEEEEECCHHHHHHhCC
Confidence 999999999999999999999999987 2 4899999999998877666
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=1.4e-30 Score=305.37 Aligned_cols=178 Identities=30% Similarity=0.390 Sum_probs=126.3
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh----------------------cCCCCCcceEEECCEeCCCCCHH
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL----------------------RLYEPTNGQILIDGFPIKEVDIK 572 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLl----------------------gl~~p~~G~I~idG~di~~~~~~ 572 (709)
.++|+|+||+|++||++||+||||||||||+++++ |+. +.+|.|.++|.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccccCCCCCCc
Confidence 56899999999999999999999999999998764 333 3457899999998754422
Q ss_pred HHhc-----------------------------------------ceEEEcccCccc-----------------------
Q 005203 573 WLRG-----------------------------------------RIGFVGQEPKLF----------------------- 588 (709)
Q Consensus 573 ~lR~-----------------------------------------~I~~V~Qd~~LF----------------------- 588 (709)
..+. ..|++.|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 2111 123333333222
Q ss_pred ----------ccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCC
Q 005203 589 ----------RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDP 656 (709)
Q Consensus 589 ----------~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p 656 (709)
..|++||+.++.. ....++.. +.+..+..++ ...+. .+||||||||++|||||+++|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~-~~~~~~~~---------~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~iAraL~~~p 562 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFAS-IPKIKRKL---------ETLYDVGLGY-MKLGQPATTLSGGEAQRVKLAAELHRRS 562 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTT-CHHHHHHH---------HHHHHTTCTT-SBTTCCGGGCCHHHHHHHHHHHHHHSCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHH-hhhHHHHH---------HHHHHcCCch-hhccCCchhCCHHHHHHHHHHHHHhhCC
Confidence 4588888888732 21112222 2233332222 12333 489999999999999999886
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 657 ---TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 657 ---~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++||||||||+||+.+.+.|.+.|+++.+. |+|+|+|||+++.+.. +|
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~---g~tvi~vtHd~~~~~~-~d 613 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN---GDTVLVIEHNLDVIKT-AD 613 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT---TCEEEEECCCHHHHTT-CS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHh-CC
Confidence 599999999999999999999999998753 6999999999997653 55
No 61
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=1e-28 Score=272.94 Aligned_cols=186 Identities=16% Similarity=0.217 Sum_probs=140.7
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC--------------------------------------CCcc
Q 005203 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE--------------------------------------PTNG 557 (709)
Q Consensus 516 ~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~--------------------------------------p~~G 557 (709)
.+++++||++++| .++||||||||||||++.|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3789999999999 999999999999999999976664 4578
Q ss_pred eEEECCEeCCCCCHHHHhcc-eEEEcccCcccccCHHHHhccCCCCCCCH------------------------------
Q 005203 558 QILIDGFPIKEVDIKWLRGR-IGFVGQEPKLFRMDISSNISYGCTQDIKQ------------------------------ 606 (709)
Q Consensus 558 ~I~idG~di~~~~~~~lR~~-I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~------------------------------ 606 (709)
+|++||.+++..+..++++. +++++|++.++-++-.++..+.+. ....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~-~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDR-RVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHH-HhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 99999999987777777777 899999999998888777766532 2211
Q ss_pred --------------HHHHHHHH-------------HHhhHHHHHcCC--C----------------Cccc---ccCCC--
Q 005203 607 --------------QDIEWAAK-------------QAYAHDFIMSLP--S----------------GYET---LVDDD-- 636 (709)
Q Consensus 607 --------------e~i~~aa~-------------~a~l~d~I~~LP--~----------------GydT---~vGe~-- 636 (709)
+++.+.+. ...+.+.+..+. . |++. .++..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 00000000 011222333332 1 2222 12111
Q ss_pred -------C-CChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhh
Q 005203 637 -------L-LSGGQKQRIAIARAILRDP--TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALS 706 (709)
Q Consensus 637 -------~-LSGGQkQRIaLARALlr~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~ 706 (709)
. ||||||||++|||||+.+| ++||||||||+||+++...+.+.|+++.+ ++|+|+|||+++.+..
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~----~~~vi~itH~~~~~~~- 361 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD----TRQVLVVTHLAQIAAR- 361 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTT----TSEEEEECSCHHHHTT-
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhC----CCEEEEEeCcHHHHhh-
Confidence 1 7999999999999999999 99999999999999999999999999863 4899999999987653
Q ss_pred cC
Q 005203 707 FD 708 (709)
Q Consensus 707 ~~ 708 (709)
+|
T Consensus 362 ~d 363 (415)
T 4aby_A 362 AH 363 (415)
T ss_dssp CS
T ss_pred cC
Confidence 44
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.8e-32 Score=304.10 Aligned_cols=166 Identities=17% Similarity=0.173 Sum_probs=132.8
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-e-EEECCEeCCCCCHHHHhc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG-Q-ILIDGFPIKEVDIKWLRG 576 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G-~-I~idG~di~~~~~~~lR~ 576 (709)
-++++||+|+|+ ++||++++||+++|+||||||||||+|+|+|++.|++| + |++|| | .|+
T Consensus 118 mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~ 179 (460)
T 2npi_A 118 MKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQ 179 (460)
T ss_dssp HHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTS
T ss_pred hhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccC
Confidence 467778877773 68999999999999999999999999999999999999 9 99998 1 378
Q ss_pred ceEEEcccCcccc----cCHHHHhccCCCC--C-CCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHH
Q 005203 577 RIGFVGQEPKLFR----MDISSNISYGCTQ--D-IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIA 649 (709)
Q Consensus 577 ~I~~V~Qd~~LF~----gTI~eNI~~g~~~--~-~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLA 649 (709)
.+++|+|++.+|. .|++||+ ++... . .+++++.++++.. |++......+||||||||++||
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~~~~LSgGq~qrlalA 247 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINENKDLYLECISQLGQV 247 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGGCHHHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccchhhhhHHHHHHHHHH
Confidence 8999999997654 5899999 76321 1 1112222333333 3443333347999999999999
Q ss_pred HH--hccCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 650 RA--ILRDPTI----LILDE-ATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 650 RA--Llr~p~I----LILDE-aTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
|| |+++|++ ||||| |||+||+. .+.+.+.++++ ++|+|+|+|+.+
T Consensus 248 ra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~------~~tviiVth~~~ 299 (460)
T 2npi_A 248 VGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL------NVNIMLVLCSET 299 (460)
T ss_dssp HHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT------TCCEEEEECCSS
T ss_pred HHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh------CCCEEEEEccCc
Confidence 99 9999999 99999 99999999 77777777665 379999999977
No 63
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=2e-28 Score=292.06 Aligned_cols=178 Identities=30% Similarity=0.401 Sum_probs=130.9
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHH---------HHHhcCCCCC------cc------eEEECCEeCCCCCH---
Q 005203 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLV---------NLLLRLYEPT------NG------QILIDGFPIKEVDI--- 571 (709)
Q Consensus 516 ~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLl---------kLLlgl~~p~------~G------~I~idG~di~~~~~--- 571 (709)
..|+|+||+|++||.+||+|+||||||||+ +++.+...+. +| .|.+|+.++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 579999999999999999999999999997 4454444333 33 36666666643221
Q ss_pred -------HHHh-------------------------------cceEEEcccCcccc------------------------
Q 005203 572 -------KWLR-------------------------------GRIGFVGQEPKLFR------------------------ 589 (709)
Q Consensus 572 -------~~lR-------------------------------~~I~~V~Qd~~LF~------------------------ 589 (709)
+..| +..|++.|+..++.
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 1111 33577888776653
Q ss_pred ---------cCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCC--
Q 005203 590 ---------MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDP-- 656 (709)
Q Consensus 590 ---------gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p-- 656 (709)
.|+.||+.|+.. ....++..++++..|+ ||. .+|. .+||||||||++|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~-~~~~~~~~~~L~~vGL---------~~~-~lgq~~~~LSGGErQRV~LAraL~~~p~~ 826 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN-IPSIKRTLQVLHDVGL---------GYV-KLGQPATTLSGGEAQRIKLASELRKRDTG 826 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT-CHHHHHHHHHHHHTTG---------GGS-BTTCCSTTCCHHHHHHHHHHHHHTSCCCS
T ss_pred cCCHHHHhhCCHHHHHHHHhc-chhHHHHHHHHHHcCC---------chh-hccCCccCCCHHHHHHHHHHHHHhhCCCC
Confidence 577788877743 3223334444444433 442 3455 589999999999999999876
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 657 -TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 657 -~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++||||||||+||+++++.+.+.|+++.+. |+|+|+|+|+++.+.. +|
T Consensus 827 p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~---G~TVIvI~HdL~~i~~-AD 875 (916)
T 3pih_A 827 RTLYILDEPTVGLHFEDVRKLVEVLHRLVDR---GNTVIVIEHNLDVIKN-AD 875 (916)
T ss_dssp SEEEEEESTTTTCCHHHHHHHHHHHHHHHHT---TCEEEEECCCHHHHTT-CS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHh-CC
Confidence 799999999999999999999999988643 6899999999998865 66
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.94 E-value=2e-27 Score=281.27 Aligned_cols=188 Identities=26% Similarity=0.373 Sum_probs=135.2
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHH-HhcCC-------CC---------------
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNL-LLRLY-------EP--------------- 554 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkL-Llgl~-------~p--------------- 554 (709)
..|+++|+++ ..|+|+||+|++||++||+|+||||||||++. |.|++ .|
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 3599999986 15999999999999999999999999999996 66554 23
Q ss_pred ---Ccc-------eEEECCEeCCCCCH----------HHHhcceEEEcc-------------------------------
Q 005203 555 ---TNG-------QILIDGFPIKEVDI----------KWLRGRIGFVGQ------------------------------- 583 (709)
Q Consensus 555 ---~~G-------~I~idG~di~~~~~----------~~lR~~I~~V~Q------------------------------- 583 (709)
.+| .|.+||.++...+. +.+|+.++.+++
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 467 78999998864332 344443333322
Q ss_pred cCcccc-------------------------cCHHHHhc--------cCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcc
Q 005203 584 EPKLFR-------------------------MDISSNIS--------YGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYE 630 (709)
Q Consensus 584 d~~LF~-------------------------gTI~eNI~--------~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~Gyd 630 (709)
|-.++. -||.||+. ++.. . +++ ..+.+.+..+.-++.
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~-~---~~~------~~~~~~L~~~gL~~~ 722 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD-E---SAI------FRALDTLREVGLGYL 722 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT-S---HHH------HHHHHHHHHTTCTTS
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc-c---hHH------HHHHHHHHHcCCCcc
Confidence 111121 25555554 3311 1 111 123455555543432
Q ss_pred cccCC--CCCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 631 TLVDD--DLLSGGQKQRIAIARAILRD---PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 631 T~vGe--~~LSGGQkQRIaLARALlr~---p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
.++. ..||||||||++|||||.++ |++|||||||++||..+.+.+.+.|+++.+. |.|+|+|+|+++.+.
T Consensus 723 -~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~---G~tVIvisHdl~~i~- 797 (842)
T 2vf7_A 723 -RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA---GNTVIAVEHKMQVVA- 797 (842)
T ss_dssp -BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT---TCEEEEECCCHHHHT-
T ss_pred -cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEcCCHHHHH-
Confidence 2454 48999999999999999996 7999999999999999999999999988643 689999999999884
Q ss_pred hcC
Q 005203 706 SFD 708 (709)
Q Consensus 706 ~~~ 708 (709)
.+|
T Consensus 798 ~aD 800 (842)
T 2vf7_A 798 ASD 800 (842)
T ss_dssp TCS
T ss_pred hCC
Confidence 465
No 65
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.94 E-value=1.4e-29 Score=255.11 Aligned_cols=150 Identities=15% Similarity=0.171 Sum_probs=102.6
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHH
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (709)
..+|+|+ ++||++||+||||||||||+++|+|+ +|++|+|. +.++.. +...+|+.||||+|++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 4689985 99999999999999999999999999 99999994 334332 2235688999999998 77
Q ss_pred Hh-ccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 005203 595 NI-SYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673 (709)
Q Consensus 595 NI-~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE 673 (709)
|+ .++.+ . .+.+........+.+.+.. |+ |||||++|||||+.+|++||||||||+ +.
T Consensus 78 nl~~~~~~-~--~~~~~~~~~~~~~~~~l~~---gl-----------Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 78 KIDPYLRP-L--HDALRDMVEPEVIPKLMEA---GI-----------VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp --CTTTHH-H--HHHHTTTSCTTHHHHHHHT---TS-----------EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHHHHH-H--HHHHHHhccHHHHHHHHHh---CC-----------chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 77 44311 0 0000000001122333332 22 999999999999999999999999999 88
Q ss_pred HHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 674 HNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 674 ~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
+.+.+.|+++ ++ ++|+| |||+++.+..
T Consensus 137 ~~l~~~l~~l-~~---g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 137 AQMKMFLTRL-GF---GSKMV-VTGDITQVDL 163 (208)
T ss_dssp HHHHHHHTTB-CT---TCEEE-EEEC------
T ss_pred HHHHHHHHHh-cC---CCEEE-EECCHHHHhC
Confidence 8899999877 32 58999 9999987654
No 66
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.94 E-value=4.6e-27 Score=278.66 Aligned_cols=186 Identities=30% Similarity=0.436 Sum_probs=133.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh-cC----C---CCCcc-------------
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL-RL----Y---EPTNG------------- 557 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLl-gl----~---~p~~G------------- 557 (709)
.++++|++. ..|+|+||+|++||.+||+|+||||||||++.|+ |. + .|..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 588999852 3699999999999999999999999999999854 22 1 12333
Q ss_pred eEEECCEeCCCCC---HH-------HHh---------cceEEEcccCcc---------------------c---------
Q 005203 558 QILIDGFPIKEVD---IK-------WLR---------GRIGFVGQEPKL---------------------F--------- 588 (709)
Q Consensus 558 ~I~idG~di~~~~---~~-------~lR---------~~I~~V~Qd~~L---------------------F--------- 588 (709)
.|.+||.|+..-. +. ..| +.+||++|...+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4889998885322 11 122 335788775321 1
Q ss_pred -------------------------ccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCccc-ccCC--CCCCh
Q 005203 589 -------------------------RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYET-LVDD--DLLSG 640 (709)
Q Consensus 589 -------------------------~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT-~vGe--~~LSG 640 (709)
..|+.||+.++.. . .++.+ ..+.+..+ |++. ..+. ..|||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~--~--~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSG 848 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS--I--PKIKR------KLETLYDV--GLGYMKLGQPATTLSG 848 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS--C--HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc--c--hhHHH------HHHHHHHc--CCCcccccCchhhCCH
Confidence 2255666665521 1 11111 13445554 4443 3454 48999
Q ss_pred HHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 641 GQKQRIAIARAILRDP---TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 641 GQkQRIaLARALlr~p---~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|||||++|||||+++| ++|||||||++||+.+.+.+.+.|+++.+. |.|+|+|+|+++.+. .+|
T Consensus 849 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~---G~TVIvisHdl~~i~-~aD 915 (972)
T 2r6f_A 849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN---GDTVLVIEHNLDVIK-TAD 915 (972)
T ss_dssp HHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT---TCEEEEECCCHHHHT-TCS
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEcCCHHHHH-hCC
Confidence 9999999999999875 999999999999999999999999988643 689999999999864 455
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=1.3e-26 Score=248.42 Aligned_cols=182 Identities=22% Similarity=0.327 Sum_probs=132.0
Q ss_pred eeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC-----------------------------------------------
Q 005203 520 HVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY----------------------------------------------- 552 (709)
Q Consensus 520 ~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~----------------------------------------------- 552 (709)
++++++.+| .++|+||||||||||++.|..+.
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578889999 99999999999999999998543
Q ss_pred ---CCCcceEEECCEeCCCCCHHHHhcceEEEcccCccc-ccCHHHHhccCCCCCC---------------CHHHHHHHH
Q 005203 553 ---EPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLF-RMDISSNISYGCTQDI---------------KQQDIEWAA 613 (709)
Q Consensus 553 ---~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~---------------~~e~i~~aa 613 (709)
.+.+|++++||.+++..+...+...+++.+|+..++ .|+|.+|+... |.+- +.+++.+..
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 445689999999986666777788899999998766 99999999765 3110 111222221
Q ss_pred HHH------------hh-HHHHHcCCCCcccccCC--------CCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCC
Q 005203 614 KQA------------YA-HDFIMSLPSGYETLVDD--------DLLSGGQKQRIAIARAIL----RDPTILILDEATSAL 668 (709)
Q Consensus 614 ~~a------------~l-~d~I~~LP~GydT~vGe--------~~LSGGQkQRIaLARALl----r~p~ILILDEaTSaL 668 (709)
... .+ .+....++.|+++.+++ ..||||||||++|||||. ++|++||||||||+|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 111 00 01123466788876532 379999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 669 DAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 669 D~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|+++.+.+.+.|+++.+ +.|+|+|||+++... .+|
T Consensus 255 D~~~~~~l~~~l~~~~~----~~~vi~~tH~~~~~~-~~d 289 (322)
T 1e69_A 255 DDYNAERFKRLLKENSK----HTQFIVITHNKIVME-AAD 289 (322)
T ss_dssp CHHHHHHHHHHHHHHTT----TSEEEEECCCTTGGG-GCS
T ss_pred CHHHHHHHHHHHHHhcC----CCeEEEEECCHHHHh-hCc
Confidence 99999999999988753 489999999987543 455
No 68
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.93 E-value=1.6e-26 Score=274.91 Aligned_cols=187 Identities=27% Similarity=0.387 Sum_probs=131.1
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh-c----CCC---CCcce-----------
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL-R----LYE---PTNGQ----------- 558 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLl-g----l~~---p~~G~----------- 558 (709)
..++++|++. .+|+|+||+|++||++||+|+||||||||+++|+ | .+. +..|.
T Consensus 646 ~~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 717 (993)
T 2ygr_A 646 RQLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLD 717 (993)
T ss_dssp SEEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCS
T ss_pred ceEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccc
Confidence 3589999851 3699999999999999999999999999999854 2 222 23343
Q ss_pred --EEECCEeCCCCC---HH-------HHh---------cceEEEcccCcc---------------------c--------
Q 005203 559 --ILIDGFPIKEVD---IK-------WLR---------GRIGFVGQEPKL---------------------F-------- 588 (709)
Q Consensus 559 --I~idG~di~~~~---~~-------~lR---------~~I~~V~Qd~~L---------------------F-------- 588 (709)
|.+||.|+.... +. ..| +..||++|...+ |
T Consensus 718 ~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~c 797 (993)
T 2ygr_A 718 KLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPC 797 (993)
T ss_dssp EEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEEC
T ss_pred eEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeee
Confidence 566777764221 11 122 345777775321 0
Q ss_pred --------------------------ccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCccc-ccCC--CCCC
Q 005203 589 --------------------------RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYET-LVDD--DLLS 639 (709)
Q Consensus 589 --------------------------~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT-~vGe--~~LS 639 (709)
..|+.||+.++.. . .++.+ ..+.+..+ |+.. .++. .+||
T Consensus 798 e~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~--~--~~~~~------~~~~L~~l--gL~~~~l~~~~~~LS 865 (993)
T 2ygr_A 798 EVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP--I--AGVHR------YLRTLVDV--GLGYVRLGQPAPTLS 865 (993)
T ss_dssp TTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT--C--HHHHH------HHHHHHHT--TGGGSBTTCCGGGSC
T ss_pred hhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc--c--hHHHH------HHHHHHHc--CCCcccccCccccCC
Confidence 1244555555521 1 11111 12344444 3443 3455 4899
Q ss_pred hHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 640 GGQKQRIAIARAILRDP---TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 640 GGQkQRIaLARALlr~p---~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
||||||++|||||+++| ++|||||||++||+.+.+.+.+.|+++.+. |.|+|+|+|+++.+. .+|
T Consensus 866 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~---G~TVIvisHdl~~i~-~aD 933 (993)
T 2ygr_A 866 GGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK---GNTVIVIEHNLDVIK-TSD 933 (993)
T ss_dssp HHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT---TCEEEEECCCHHHHT-TCS
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC---CCEEEEEcCCHHHHH-hCC
Confidence 99999999999999875 999999999999999999999999988643 689999999999874 455
No 69
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.93 E-value=2.8e-29 Score=254.46 Aligned_cols=167 Identities=17% Similarity=0.191 Sum_probs=119.9
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH-HHHhcceEEEcccCcccc-----
Q 005203 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI-KWLRGRIGFVGQEPKLFR----- 589 (709)
Q Consensus 516 ~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~-~~lR~~I~~V~Qd~~LF~----- 589 (709)
.-|+|+||+|++|+++||+||||||||||+++|+|++ | |+|.+ |+++...+. ...++.++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4699999999999999999999999999999999999 6 99999 887754332 346788999999987664
Q ss_pred ------cCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH-----HHHhccCCCE
Q 005203 590 ------MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI-----ARAILRDPTI 658 (709)
Q Consensus 590 ------gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL-----ARALlr~p~I 658 (709)
+++.+| .++. .++++.++++.. ....+ +.+||||||||++| ||+++++|++
T Consensus 87 ~~~l~~~~~~~~-~~g~----~~~~i~~~l~~~------------~~~il-~~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT----LKSEYDKAKEQN------------KICLF-EMNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp TCEEEEEEETTE-EEEE----EHHHHHHHHHTT------------CEEEE-EECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred cchhhhhhcccc-cCCC----cHHHHHHHHhCC------------CcEEE-EecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 344455 3442 234555554432 12222 25799999999999 9999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhccCC----CCcEEEEEecChhhhh
Q 005203 659 LILDEATSALDAESEHNIKGVLRAVRSDTM----TRRTVLVIAHRLISTA 704 (709)
Q Consensus 659 LILDEaTSaLD~~tE~~I~~~L~~l~~~~~----~~~TvIiIAHRlsti~ 704 (709)
++|||||+++|.++|..|.+.+.+..++.. ...+.|++.|+++...
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~ 198 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTY 198 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHH
Confidence 999999999999999999999976643210 2478899999987654
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.93 E-value=1.2e-27 Score=233.05 Aligned_cols=147 Identities=16% Similarity=0.233 Sum_probs=105.4
Q ss_pred eeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccC
Q 005203 520 HVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYG 599 (709)
Q Consensus 520 ~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g 599 (709)
|+||++++||.++|+||||||||||+|++.+ |... ++.+.+| ++++|++. ++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~----~~------- 52 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDEN----DQ------- 52 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTT----CG-------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCccc----ch-------
Confidence 6899999999999999999999999999652 2211 2334444 56777752 11
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH-----
Q 005203 600 CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE----- 673 (709)
Q Consensus 600 ~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe-~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE----- 673 (709)
.. .....+.+... ....+..|+.+.+.. ...|||||||++||||+..+|++|+|||||++||+.++
T Consensus 53 ---~~-~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~ 124 (171)
T 4gp7_A 53 ---TV-TGAAFDVLHYI----VSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDR 124 (171)
T ss_dssp ---GG-HHHHHHHHHHH----HHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSC
T ss_pred ---hh-HHHHHHHHHHH----HHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCC
Confidence 11 11111111110 111234577777766 46799999999999999999999999999999999955
Q ss_pred -----------HHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 674 -----------HNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 674 -----------~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
+.+.+.|+++.++ |.|+|+|+|+++.+..
T Consensus 125 ~~~~~vi~~~~~~l~~~l~~l~~~---g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 125 QVEEYVIRKHTQQMKKSIKGLQRE---GFRYVYILNSPEEVEE 164 (171)
T ss_dssp CCCHHHHHHHHHHHHHHSTTHHHH---TCSEEEEECSHHHHHH
T ss_pred CCCHHHHHHHHHHhhhhhhhHHhc---CCcEEEEeCCHHHhhh
Confidence 7777777666543 6899999999987653
No 71
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.93 E-value=4.6e-29 Score=268.38 Aligned_cols=203 Identities=14% Similarity=0.148 Sum_probs=142.4
Q ss_pred HHH-HHHHhC----CcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCcccccccccc-CCC
Q 005203 425 IGG-MFIMRG----NITAEQLTKFILYSEWLIYSTWWVGD-NLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQ-RLM 497 (709)
Q Consensus 425 ~ga-~lV~~G----~lt~G~l~af~~y~~~~~~~~~~l~~-~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~~~~~~-~~~ 497 (709)
.|. +...++ .+|.|.+.+|+.|...+..+ .+.. ....+.....+.+|+.++++.+.... ........ ...
T Consensus 61 ~g~~~~~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~~-~~~~~~ir~~~~ 137 (330)
T 2pt7_A 61 NNGEWQPFDVRDRKAFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVND-ETISISIRIPSK 137 (330)
T ss_dssp TTSCEEEEECTTCGGGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSST-TCCEEEEECCCC
T ss_pred CCceEEEecCCcccCCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccCC-CCceEEEeCCCC
Confidence 444 444454 69999999998887665443 1211 11111122234567777775433211 00011111 112
Q ss_pred CcEE---------EEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC
Q 005203 498 GRID---------FVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE 568 (709)
Q Consensus 498 ~~I~---------~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~ 568 (709)
+.++ |+||+| | .++++++|++|++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ +
T Consensus 138 ~~i~l~~l~~~g~~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e 209 (330)
T 2pt7_A 138 TTYPHSFFEEQGFYNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--E 209 (330)
T ss_dssp CCCCHHHHHHTTTTTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--C
T ss_pred CCCCHHHHHhCCCcCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--c
Confidence 3456 778888 7 258999999999999999999999999999999999999999999999976 3
Q ss_pred CCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHH
Q 005203 569 VDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAI 648 (709)
Q Consensus 569 ~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaL 648 (709)
+....+|+.+++++| |||+||++|
T Consensus 210 ~~~~~~~~~i~~~~g--------------------------------------------------------gg~~~r~~l 233 (330)
T 2pt7_A 210 IVFKHHKNYTQLFFG--------------------------------------------------------GNITSADCL 233 (330)
T ss_dssp CCCSSCSSEEEEECB--------------------------------------------------------TTBCHHHHH
T ss_pred cccccchhEEEEEeC--------------------------------------------------------CChhHHHHH
Confidence 343445666766541 899999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 649 ARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 649 ARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
||||.++|++++|||||+. .+.+.|+++..+ +.|+|+++|++++..
T Consensus 234 a~aL~~~p~ilildE~~~~-------e~~~~l~~~~~g---~~tvi~t~H~~~~~~ 279 (330)
T 2pt7_A 234 KSCLRMRPDRIILGELRSS-------EAYDFYNVLCSG---HKGTLTTLHAGSSEE 279 (330)
T ss_dssp HHHTTSCCSEEEECCCCST-------HHHHHHHHHHTT---CCCEEEEEECSSHHH
T ss_pred HHHhhhCCCEEEEcCCChH-------HHHHHHHHHhcC---CCEEEEEEcccHHHH
Confidence 9999999999999999982 245667666543 358999999998543
No 72
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.90 E-value=2e-26 Score=253.92 Aligned_cols=164 Identities=18% Similarity=0.204 Sum_probs=131.3
Q ss_pred CccceeeeEEecCCc--------------------EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHH
Q 005203 515 VPVLQHVNISVNPGE--------------------VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWL 574 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge--------------------~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~l 574 (709)
..+|+|+|++|++|| .+||+||||||||||+|+|+|+++|++|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 468999999999999 99999999999999999999999999999999998763
Q ss_pred hcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChH--HHHHHHHHHHh
Q 005203 575 RGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGG--QKQRIAIARAI 652 (709)
Q Consensus 575 R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGG--QkQRIaLARAL 652 (709)
| .++++|++...+-|+.||+.++.+ ++++.+.++..++.+ ++..+ .|||| ||||++|||||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~L~~~~L~~--------~~~~~---~lS~G~~~kqrv~la~aL 171 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGST----NFPPDTYLEKMKFYE--------YDFFI---IISATRFKKNDIDIAKAI 171 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGS----SCCHHHHHHHTTGGG--------CSEEE---EEESSCCCHHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccch----HHHHHHHHHHcCCCc--------cCCeE---EeCCCCccHHHHHHHHHH
Confidence 2 278999986557899999988743 234566666666433 22222 28999 99999999999
Q ss_pred cc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-----cc-CCCCcEEEEEecChhh
Q 005203 653 LR----------DPTILILDEATSALDAESEHNIKGVLRAVR-----SD-TMTRRTVLVIAHRLIS 702 (709)
Q Consensus 653 lr----------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-----~~-~~~~~TvIiIAHRlst 702 (709)
.+ +|++++||||||+||+.+++.+.+.|+++. +. ...+.++++-||.++-
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~ 237 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCH 237 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTS
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCc
Confidence 99 999999999999999999999999998773 11 1123567788998764
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.90 E-value=2.6e-25 Score=218.46 Aligned_cols=135 Identities=18% Similarity=0.138 Sum_probs=99.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHH
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDI 609 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i 609 (709)
+++|+||||||||||+|+|+|++. |.++|.+..+......++++|+++|++ +..+|+. +.- ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~-~~----- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK-FF----- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET-TC-----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh-cC-----
Confidence 689999999999999999999995 667887765443225678999999987 3345541 110 00
Q ss_pred HHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHH-----hccCCCEEEEeC--CCCCCCHHHHHHHHHHH
Q 005203 610 EWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARA-----ILRDPTILILDE--ATSALDAESEHNIKGVL 680 (709)
Q Consensus 610 ~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARA-----Llr~p~ILILDE--aTSaLD~~tE~~I~~~L 680 (709)
+ .+..++. .+||||||||++|||| ++.+|++||||| ||++||+...+.+.+.+
T Consensus 65 ----------------~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l 126 (178)
T 1ye8_A 65 ----------------T--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM 126 (178)
T ss_dssp ----------------C--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH
T ss_pred ----------------C--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHH
Confidence 0 0134454 4899999999999996 999999999999 99999999999999888
Q ss_pred HHhhccCCCCcEEEEEec---Chhhhhh
Q 005203 681 RAVRSDTMTRRTVLVIAH---RLISTAL 705 (709)
Q Consensus 681 ~~l~~~~~~~~TvIiIAH---Rlsti~~ 705 (709)
++. +.|+|+++| +...+..
T Consensus 127 ~~~------~~~~i~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 127 HDP------NVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp TCT------TSEEEEECCSSCCSHHHHH
T ss_pred hcC------CCeEEEEEccCCCchHHHH
Confidence 652 478999996 5555443
No 74
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.90 E-value=5e-27 Score=250.48 Aligned_cols=166 Identities=19% Similarity=0.246 Sum_probs=126.4
Q ss_pred cCCCCcEEEEEEEEEcCCCCCCccceeeeEE-----------------------ecCCcEEEEEcCCCCcHHHHHHHHhc
Q 005203 494 QRLMGRIDFVDVSFRYSSREMVPVLQHVNIS-----------------------VNPGEVVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 494 ~~~~~~I~~~nVsF~Y~~~~~~~vL~~lsl~-----------------------I~~Ge~vAIVG~SGsGKSTLlkLLlg 550 (709)
+...+.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|.|
T Consensus 38 ~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 38 RGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34456799999999994 477777765 89999999999999999999999999
Q ss_pred CCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCC----CCCCCHHHHHHHHHHHhhHHHHHcCC
Q 005203 551 LYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGC----TQDIKQQDIEWAAKQAYAHDFIMSLP 626 (709)
Q Consensus 551 l~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~----~~~~~~e~i~~aa~~a~l~d~I~~LP 626 (709)
+++|.+|+ +.+++|+||+++|..|++||+.+.. +...+.+.+.+ ++..+.
T Consensus 113 ll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~---------~L~~l~ 166 (312)
T 3aez_A 113 LLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMR---------FVTSVK 166 (312)
T ss_dssp HHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHH---------HHHHHH
T ss_pred hccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHH---------HHHHhC
Confidence 99998764 5799999999999999999998642 21223333333 344333
Q ss_pred CCcc-cccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 627 SGYE-TLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 627 ~Gyd-T~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
.|+. ..+ ..|||||+||+++|||++.+|+|||||||++.+|... ..+..+. ..+|+|.|..++.
T Consensus 167 ~~~~~~~~--~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~------D~~I~V~a~~~~~ 231 (312)
T 3aez_A 167 SGSDYACA--PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF------DFSLYVDARIEDI 231 (312)
T ss_dssp TTCSCEEE--EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC------SEEEEEEECHHHH
T ss_pred CCcccCCc--ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc------CcEEEEECCHHHH
Confidence 3443 222 3799999999999999999999999999999998532 1222222 3568888877653
No 75
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.89 E-value=2.6e-26 Score=224.09 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=101.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCC---cceEEECCEeCCCCC---HHHHh-cceE----EEcccCcccccCHHHHhc
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLYEPT---NGQILIDGFPIKEVD---IKWLR-GRIG----FVGQEPKLFRMDISSNIS 597 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~~p~---~G~I~idG~di~~~~---~~~lR-~~I~----~V~Qd~~LF~gTI~eNI~ 597 (709)
+++||||+||||||||+++|+|+|+|+ .|+|.+||.++.+++ .+.+| +++| +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999999 899999999988887 77888 5788 899999988 222
Q ss_pred cCCCCCCCHHHHHHHHHHHhhHHHHHc-CCCCcccccCCCCCChHHHHHHHHHHHhccCCCEE-------EEeCCC---C
Q 005203 598 YGCTQDIKQQDIEWAAKQAYAHDFIMS-LPSGYETLVDDDLLSGGQKQRIAIARAILRDPTIL-------ILDEAT---S 666 (709)
Q Consensus 598 ~g~~~~~~~e~i~~aa~~a~l~d~I~~-LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~IL-------ILDEaT---S 666 (709)
+ +++ + .|+++++|.+ +| ||||.++|. |||||||||+||||++++|++. +=|.+. -
T Consensus 77 -~-----~~~-~-----~a~l~~~i~~~l~-g~dt~i~Eg-lSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~ 142 (171)
T 2f1r_A 77 -V-----SEE-E-----GNDLDWIYERYLS-DYDLVITEG-FSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHK 142 (171)
T ss_dssp -C-----CHH-H-----HTCHHHHHHHHTT-TCSEEEEES-CGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSC
T ss_pred -C-----Chh-h-----hhCHHHHHHhhCC-CCCEEEECC-cCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCc
Confidence 1 122 2 7899999999 99 999999997 9999999999999999999873 123332 1
Q ss_pred CCCHHHHHHHHHHHHH
Q 005203 667 ALDAESEHNIKGVLRA 682 (709)
Q Consensus 667 aLD~~tE~~I~~~L~~ 682 (709)
.+|.+....+.+-|.+
T Consensus 143 ~f~~~~~~~~a~~i~~ 158 (171)
T 2f1r_A 143 WFRRDEVERIAEFILS 158 (171)
T ss_dssp EECTTCHHHHHHHHHH
T ss_pred ccCcccHHHHHHHHHH
Confidence 2345555677777644
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.88 E-value=8.1e-25 Score=228.85 Aligned_cols=148 Identities=17% Similarity=0.154 Sum_probs=96.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCccccc-CHHHHhccCCCCC--CCH
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRM-DISSNISYGCTQD--IKQ 606 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~~~--~~~ 606 (709)
.+|||||||||||||+|+|+|++.|++|+|.++|.++.. ...++.+++|+|++.++.. |+.||+.||.... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999998743 3456889999999998865 9999999985311 112
Q ss_pred HHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcc
Q 005203 607 QDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSD 686 (709)
Q Consensus 607 e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~ 686 (709)
+.+.+..+ .++-..++ ..||||||||+++|||+.. +++|||||++||+.. ..+ ++.+.+.
T Consensus 81 ~~i~~~~~----~~~~~~~~---------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~---l~~L~~~ 140 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK---------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEF---MKHLSKV 140 (270)
T ss_dssp HHHHHHHH----HHHHHHHH---------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHH---HHHHHTT
T ss_pred HHHHHHHH----HHHHhhhH---------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHH---HHHHHhc
Confidence 33444333 23322222 2489999999999999886 999999999999876 333 3444322
Q ss_pred CCCCcEEEEEecChhhhh
Q 005203 687 TMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 687 ~~~~~TvIiIAHRlsti~ 704 (709)
.++|+|.|+..++.
T Consensus 141 ----~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 141 ----VNIIPVIAKADTMT 154 (270)
T ss_dssp ----SEEEEEETTGGGSC
T ss_pred ----CcEEEEEeccccCC
Confidence 79999999887653
No 77
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=6.9e-22 Score=215.36 Aligned_cols=68 Identities=29% Similarity=0.440 Sum_probs=61.4
Q ss_pred CCChHHHHHHHHHHHhc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 637 LLSGGQKQRIAIARAIL------RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 637 ~LSGGQkQRIaLARALl------r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.||||||||++|||||. ++|++|||||||++||+++...+.+.|+++.+. |+|+|+|||+++.+ ..+|
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~---g~tvi~itH~~~~~-~~~d 352 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL---NKVIVFITHDREFS-EAFD 352 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGS---SSEEEEEESCHHHH-TTCS
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC---CCEEEEEecchHHH-HhCC
Confidence 79999999999999999 799999999999999999999999999988643 69999999999874 3344
No 78
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.86 E-value=1.5e-25 Score=233.25 Aligned_cols=182 Identities=17% Similarity=0.199 Sum_probs=148.0
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-cceEEECCEeCCCCCHHHHhcce
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-NGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~-~G~I~idG~di~~~~~~~lR~~I 578 (709)
++++|++|. ++|+|+| +++|+.++|+||||||||||+++|+|+++|+ +|+|.++|.|+..+. +..+
T Consensus 6 ~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKK 72 (261)
T ss_dssp CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSS
T ss_pred CChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcc
Confidence 345666542 4899999 9999999999999999999999999999998 999999999886542 4557
Q ss_pred EEEcc-----cCcccccCHHHHhccCCCCCC-------CHHHHHHHHHHHhh----------------HHHH--------
Q 005203 579 GFVGQ-----EPKLFRMDISSNISYGCTQDI-------KQQDIEWAAKQAYA----------------HDFI-------- 622 (709)
Q Consensus 579 ~~V~Q-----d~~LF~gTI~eNI~~g~~~~~-------~~e~i~~aa~~a~l----------------~d~I-------- 622 (709)
++|+| ++..|..+|+.++... | +. |.+.+.++++.+.- .+-+
T Consensus 73 ~~v~q~~~gl~~~~l~~~la~aL~~~-p-~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~ 150 (261)
T 2eyu_A 73 SIVNQREVGEDTKSFADALRAALRED-P-DVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQ 150 (261)
T ss_dssp SEEEEEEBTTTBSCHHHHHHHHHHHC-C-SEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGG
T ss_pred eeeeHHHhCCCHHHHHHHHHHHHhhC-C-CEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccc
Confidence 78888 7778899999999874 4 44 78877777765531 1211
Q ss_pred -----HcCCCCcccccCCC--CCChHHHHHHHHHHHhccCCCE--EEEeCCCCCCCHHH---------HHHHHHHHHHhh
Q 005203 623 -----MSLPSGYETLVDDD--LLSGGQKQRIAIARAILRDPTI--LILDEATSALDAES---------EHNIKGVLRAVR 684 (709)
Q Consensus 623 -----~~LP~GydT~vGe~--~LSGGQkQRIaLARALlr~p~I--LILDEaTSaLD~~t---------E~~I~~~L~~l~ 684 (709)
..++++|++.|++. .+||| ||+++||+++.+|++ +|+||+||++|... |..++++++.+.
T Consensus 151 ~~~~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 228 (261)
T 2eyu_A 151 QEQVRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK 228 (261)
T ss_dssp HHHHHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHH
T ss_pred cchHHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH
Confidence 13457899999984 88999 999999999999999 99999999999863 456788888776
Q ss_pred ccCCCCcEEEEEecChhh
Q 005203 685 SDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 685 ~~~~~~~TvIiIAHRlst 702 (709)
+ |+|.+.+|||++.
T Consensus 229 ~----g~t~~~~a~r~~~ 242 (261)
T 2eyu_A 229 Q----GLITLEDAMEASP 242 (261)
T ss_dssp T----TSSCHHHHHHHCS
T ss_pred c----CCCCHHHHHHHhC
Confidence 5 5999999999874
No 79
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.86 E-value=2.7e-25 Score=242.73 Aligned_cols=174 Identities=17% Similarity=0.195 Sum_probs=143.7
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-cceEEECCEeCCCCCHHHHhcceEEEcc-----cCcccc
Q 005203 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-NGQILIDGFPIKEVDIKWLRGRIGFVGQ-----EPKLFR 589 (709)
Q Consensus 516 ~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~-~G~I~idG~di~~~~~~~lR~~I~~V~Q-----d~~LF~ 589 (709)
++|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.++|.|+. + .+++.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4677765 8999999999999999999999999999998 899988877764 2 46788999999 899999
Q ss_pred cCHHHHhccCCCCCC-------CHHHHHHHHHHHhhH----------------HHH-------------HcCCCCccccc
Q 005203 590 MDISSNISYGCTQDI-------KQQDIEWAAKQAYAH----------------DFI-------------MSLPSGYETLV 633 (709)
Q Consensus 590 gTI~eNI~~g~~~~~-------~~e~i~~aa~~a~l~----------------d~I-------------~~LP~GydT~v 633 (709)
++|++|++.. | +. |++.+..+++.++.. +-+ ..+|.++++.|
T Consensus 200 ~~l~~~L~~~-p-d~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv 277 (372)
T 2ewv_A 200 DALRAALRED-P-DVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGII 277 (372)
T ss_dssp HHHHHHTTSC-C-SEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEE
T ss_pred HHHHHHhhhC-c-CEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEE
Confidence 9999999984 5 66 888888888877531 111 12467899999
Q ss_pred CC--CCCChHHHHHHHHHHHhccCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHHhhccCCCCcEEEEEecCh
Q 005203 634 DD--DLLSGGQKQRIAIARAILRDPTI--LILDEATSALDAE----S-----EHNIKGVLRAVRSDTMTRRTVLVIAHRL 700 (709)
Q Consensus 634 Ge--~~LSGGQkQRIaLARALlr~p~I--LILDEaTSaLD~~----t-----E~~I~~~L~~l~~~~~~~~TvIiIAHRl 700 (709)
++ ..+||| ||+++||+++.+|+| +|+||+||+||.. + |..++++++.+.+ |+|.+.+|||+
T Consensus 278 ~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~----g~t~~~~a~r~ 351 (372)
T 2ewv_A 278 SQRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQ----GLITLEDAMEA 351 (372)
T ss_dssp EEEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTT----SSSCTTTTTSS
T ss_pred EEEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHC----CCCCHHHHHHH
Confidence 98 378999 999999999999999 9999999999965 3 4457777776654 59999999999
Q ss_pred hhh
Q 005203 701 IST 703 (709)
Q Consensus 701 sti 703 (709)
+.-
T Consensus 352 ~~~ 354 (372)
T 2ewv_A 352 SPD 354 (372)
T ss_dssp CSC
T ss_pred cCC
Confidence 753
No 80
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.85 E-value=4.5e-24 Score=226.67 Aligned_cols=154 Identities=17% Similarity=0.207 Sum_probs=112.6
Q ss_pred eeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC----HHHH--hcceEEEcccCc-cc-cc
Q 005203 519 QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD----IKWL--RGRIGFVGQEPK-LF-RM 590 (709)
Q Consensus 519 ~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~----~~~l--R~~I~~V~Qd~~-LF-~g 590 (709)
+++||++++|++++|||||||||||+++.|+|+++|++|+|.++|.|+...+ +..| |..|++|+|++. ++ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4678899999999999999999999999999999999999999999986543 2344 457999999987 55 56
Q ss_pred CHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCC--EEEEeCCCC
Q 005203 591 DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPT--ILILDEATS 666 (709)
Q Consensus 591 TI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~--ILILDEaTS 666 (709)
|++||+.++.....+. ..++. .|....... ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 171 ~v~e~l~~~~~~~~d~-------------~lldt--~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYDV-------------VLCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHTTCSE-------------EEECC--CCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHcCCcc-------------hHHhc--CCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 8999998652111110 00111 122111101 2588 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCcEEEEEecC
Q 005203 667 ALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHR 699 (709)
Q Consensus 667 aLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHR 699 (709)
+||+.+.. +.+.+- .+.|+|++||-
T Consensus 232 glD~~~~~---~~~~~~-----~g~t~iiiThl 256 (302)
T 3b9q_A 232 GLNMLPQA---REFNEV-----VGITGLILTKL 256 (302)
T ss_dssp GGGGHHHH---HHHHHH-----TCCCEEEEECC
T ss_pred CcCHHHHH---HHHHHh-----cCCCEEEEeCC
Confidence 99998653 223221 15899999993
No 81
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.85 E-value=5.2e-26 Score=247.54 Aligned_cols=223 Identities=16% Similarity=0.101 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHh-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccC-CC
Q 005203 420 VIAVLIGGMFIMR-GNITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQLMDLMPSDQFMSKGKKLQR-LM 497 (709)
Q Consensus 420 i~vl~~ga~lV~~-G~lt~G~l~af~~y~~~~~~~~~~l~~~~~~~~~~~~~~~Rl~~il~~~~e~~~~~~~~~~~~-~~ 497 (709)
+.+.+.|++.+.+ |.+|.|.+.+|+.|...+..+ .+......+.....+.+|+.+++ +|+............ ..
T Consensus 49 v~v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~ 124 (361)
T 2gza_A 49 VFCERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSF 124 (361)
T ss_dssp EEEEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCC
T ss_pred EEEEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCC
Confidence 3445567777776 899999999999887765543 12211111222233457887777 343221100111111 12
Q ss_pred CcE---------EEEEEEEE---cCCCCCCccc---------eeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc
Q 005203 498 GRI---------DFVDVSFR---YSSREMVPVL---------QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN 556 (709)
Q Consensus 498 ~~I---------~~~nVsF~---Y~~~~~~~vL---------~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~ 556 (709)
+.+ +|+||+|+ |++. ++++| +++|++|++|+.++|+||||||||||+++|+|+++|++
T Consensus 125 ~~itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~ 203 (361)
T 2gza_A 125 TRRTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQ 203 (361)
T ss_dssp CCCCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTS
T ss_pred CCCCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCc
Confidence 345 89999999 9742 24566 99999999999999999999999999999999999999
Q ss_pred ceEEECCEeCCCCCHHHHhcceEEEc-ccCcc---cccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccc
Q 005203 557 GQILIDGFPIKEVDIKWLRGRIGFVG-QEPKL---FRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETL 632 (709)
Q Consensus 557 G~I~idG~di~~~~~~~lR~~I~~V~-Qd~~L---F~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~ 632 (709)
|.|.++|. .++....+|+.+++|+ |++.+ +..|+++||.++.. ..++..+...++.+.+++++.++|.|++|.
T Consensus 204 g~I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~-~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~ 280 (361)
T 2gza_A 204 RLITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR-MKPTRILLAELRGGEAYDFINVAASGHGGS 280 (361)
T ss_dssp CEEEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTT-SCCSEEEESCCCSTHHHHHHHHHHTTCCSC
T ss_pred eEEEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHh-cCCCEEEEcCchHHHHHHHHHHHhcCCCeE
Confidence 99999985 4566666889999999 99887 89999999998754 333444455566678899999999999999
Q ss_pred cCC--CCCChHHHHHHHHHH
Q 005203 633 VDD--DLLSGGQKQRIAIAR 650 (709)
Q Consensus 633 vGe--~~LSGGQkQRIaLAR 650 (709)
+++ .+-+.+..+|+....
T Consensus 281 l~t~H~~~~~~~~~Rl~~l~ 300 (361)
T 2gza_A 281 ITSCHAGSCELTFERLALMV 300 (361)
T ss_dssp EEEEECSSHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 988 455888899998876
No 82
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.84 E-value=3.1e-23 Score=230.71 Aligned_cols=170 Identities=15% Similarity=0.162 Sum_probs=133.3
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE---eCCCC-----
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF---PIKEV----- 569 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~---di~~~----- 569 (709)
+.++++||++.|.. ...+|+++ |+|++||+++|+||||||||||+++|+|+++|++|.|.++|+ ++.++
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 46899999999973 25799999 999999999999999999999999999999999999999998 55443
Q ss_pred CHHHHhcceEEEccc-C-cccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcc--cccCC-CCCChHHHH
Q 005203 570 DIKWLRGRIGFVGQE-P-KLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYE--TLVDD-DLLSGGQKQ 644 (709)
Q Consensus 570 ~~~~lR~~I~~V~Qd-~-~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~Gyd--T~vGe-~~LSGGQkQ 644 (709)
+...+++.|++|+|+ . ....-|+.+|+.+.. +.. .. .|.+ -.+.+ .+||||| |
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a-------e~~------------~~--~~~~v~~~ld~l~~lS~g~-q 264 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA-------EDF------------RD--RGQHVLLIMDSLTRYAMAQ-R 264 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH-------HHH------------HT--TTCEEEEEEECHHHHHHHH-H
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH-------HHH------------Hh--CCCCHHHHHHhHHHHHHHH-H
Confidence 245688999999995 3 344667888876531 110 00 1211 12222 4799999 9
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccC-CCCc-----EEEEEecChh
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDT-MTRR-----TVLVIAHRLI 701 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~-~~~~-----TvIiIAHRls 701 (709)
|++|| +++|++ |++||+.++..+.+.++++.+.. ..|+ |++++||+++
T Consensus 265 rvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~ 318 (438)
T 2dpy_A 265 EIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ 318 (438)
T ss_dssp HHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC
T ss_pred HHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc
Confidence 99999 899998 99999999999999998875310 0254 9999999996
No 83
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.84 E-value=3.3e-23 Score=224.47 Aligned_cols=154 Identities=17% Similarity=0.204 Sum_probs=113.9
Q ss_pred eeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC----HHHH--hcceEEEcccCc-cc-cc
Q 005203 519 QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD----IKWL--RGRIGFVGQEPK-LF-RM 590 (709)
Q Consensus 519 ~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~----~~~l--R~~I~~V~Qd~~-LF-~g 590 (709)
+.+||++++|++++|||||||||||+++.|+|+++|++|+|.++|.|+.... +..| |..|++|+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578899999999999999999999999999999999999999999986542 2333 567999999987 54 56
Q ss_pred CHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCC--EEEEeCCCC
Q 005203 591 DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPT--ILILDEATS 666 (709)
Q Consensus 591 TI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~--ILILDEaTS 666 (709)
|++|||.++.....+. .. ++. .|....... ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 228 tv~e~l~~~~~~~~d~----~l---------ldt--~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptt 288 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV----VL---------CDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 288 (359)
T ss_dssp HHHHHHHHHHHTTCSE----EE---------EEC--CCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGG
T ss_pred hHHHHHHHHHhCCCHH----HH---------HHh--cCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCC
Confidence 8999998752111110 00 111 122111101 2588 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCcEEEEEecC
Q 005203 667 ALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHR 699 (709)
Q Consensus 667 aLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHR 699 (709)
+||+.+... .+.+- .+.|+|++||-
T Consensus 289 glD~~~~~~---~~~~~-----~g~t~iiiThl 313 (359)
T 2og2_A 289 GLNMLPQAR---EFNEV-----VGITGLILTKL 313 (359)
T ss_dssp GGGGHHHHH---HHHHH-----TCCCEEEEESC
T ss_pred CCCHHHHHH---HHHHh-----cCCeEEEEecC
Confidence 999986532 23221 15899999993
No 84
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.83 E-value=7.1e-23 Score=205.16 Aligned_cols=166 Identities=16% Similarity=0.115 Sum_probs=107.6
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCccccc-CHH
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRM-DIS 593 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~g-TI~ 593 (709)
.++++| .+|++||+++|+||||||||||+|+|+|+++ +|.+++.....-.....++.++|++|++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 578888 7999999999999999999999999999996 355554222111112346789999999988753 345
Q ss_pred HHhccC----C---CCCCCHHHHHHH----------HHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCC
Q 005203 594 SNISYG----C---TQDIKQQDIEWA----------AKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (709)
Q Consensus 594 eNI~~g----~---~~~~~~e~i~~a----------a~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p 656 (709)
||+... . ....+.+++.+. ++..++.+.....|.. || ||+.+|
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---------lS-----------~l~~~p 142 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEA---------VT-----------VFLAPP 142 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTS---------EE-----------EEEECS
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCc---------EE-----------EEEECC
Confidence 555211 0 001123333332 3344555554554432 34 999999
Q ss_pred CEEEEeCCCCCC----CHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 657 TILILDEATSAL----DAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 657 ~ILILDEaTSaL----D~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
++++|||||+++ |+...+++.+.++++.++ .+.|+|+|+|+++.+..-+|
T Consensus 143 ~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~--~g~tvi~vtHdl~~~~~~~d 196 (207)
T 1znw_A 143 SWQDLQARLIGRGTETADVIQRRLDTARIELAAQ--GDFDKVVVNRRLESACAELV 196 (207)
T ss_dssp CHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGG--GGSSEEEECSSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh--ccCcEEEECCCHHHHHHHHH
Confidence 999999999998 677888999999887532 25899999999998876554
No 85
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.82 E-value=8.2e-23 Score=222.57 Aligned_cols=158 Identities=20% Similarity=0.231 Sum_probs=120.5
Q ss_pred cceeeeEEecC--CcEEEEEcCCCCcHHHHHHHHhcCCCCCc----ceEEE----CCEeCCCCCHHHHhcceEEEcccCc
Q 005203 517 VLQHVNISVNP--GEVVAIAGLSGSGKSTLVNLLLRLYEPTN----GQILI----DGFPIKEVDIKWLRGRIGFVGQEPK 586 (709)
Q Consensus 517 vL~~lsl~I~~--Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~----G~I~i----dG~di~~~~~~~lR~~I~~V~Qd~~ 586 (709)
+.+.|+++|++ |+++|||||||||||||+++|+|+|+|++ |+|++ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 99987 46665 5566666 56999999999
Q ss_pred ccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCC--ccccc-CC---------CCCChHHHHHHHHHHHh--
Q 005203 587 LFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSG--YETLV-DD---------DLLSGGQKQRIAIARAI-- 652 (709)
Q Consensus 587 LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~G--ydT~v-Ge---------~~LSGGQkQRIaLARAL-- 652 (709)
+|++|++|||.+++. +..+..+.......+..+++.+++.+ ++..+ +| .++||||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~ 313 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT-DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKK 313 (365)
T ss_dssp HHHHHHCSSEEEESS-CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeC-CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHH
Confidence 999999999999865 55556666665555566777776644 55533 32 36899999999999999
Q ss_pred -cc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 005203 653 -LR--DPTILILDEATSALDAESEHNIKGVLRAV 683 (709)
Q Consensus 653 -lr--~p~ILILDEaTSaLD~~tE~~I~~~L~~l 683 (709)
++ +++++++|||| .+.++.+.+..+
T Consensus 314 l~~~~~~~ililde~~------~~~r~~~~i~~i 341 (365)
T 1lw7_A 314 LLDKYKVPYIEIESPS------YLDRYNQVKAVI 341 (365)
T ss_dssp HHHGGGCCCEEEECSS------HHHHHHHHHHHH
T ss_pred HHHHcCCCEEEeCCCC------HHHHHHHHHHHH
Confidence 87 89999999997 344555554433
No 86
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.79 E-value=1.6e-22 Score=202.38 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=113.8
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCccccc---CHHHHhc--cC
Q 005203 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRM---DISSNIS--YG 599 (709)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~g---TI~eNI~--~g 599 (709)
.++|+++||+||||||||||+++|.|++.| ++++|+||+++++. |+.+|+. ++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 579999999999999999999999999975 69999999999865 4666554 44
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChH----HHHHHHHHHHhccCCCEEEEeCCCCC-------C
Q 005203 600 CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGG----QKQRIAIARAILRDPTILILDEATSA-------L 668 (709)
Q Consensus 600 ~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGG----QkQRIaLARALlr~p~ILILDEaTSa-------L 668 (709)
.+...+.+++.++++..++.+.+.. | +++ +|+| |+||+++||+++.+|+++++||||++ |
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~-------~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-VYD-------FRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-CEE-------TTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-ccc-------CcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 3334567888888888877666544 4 444 4555 46899999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHhhccCCCCcEEEEEecCh
Q 005203 669 DAESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700 (709)
Q Consensus 669 D~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRl 700 (709)
|+.++.++.+.+++..++ .|+|++.|+|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~--~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLE--RGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHH--SCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 999999999998764211 258999999984
No 87
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.79 E-value=1.5e-22 Score=201.90 Aligned_cols=140 Identities=20% Similarity=0.281 Sum_probs=113.2
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCCC-------------CCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccC
Q 005203 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLYE-------------PTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMD 591 (709)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-------------p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gT 591 (709)
+++|+.++||||||||||||+++|+|+++ |.+|+ +||.++..++.+.+|+.+ +|++++|.++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999996 88998 699999999999999986 7999999999
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH-HhccCCCEEEEeCCCCCCCH
Q 005203 592 ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR-AILRDPTILILDEATSALDA 670 (709)
Q Consensus 592 I~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR-ALlr~p~ILILDEaTSaLD~ 670 (709)
+.+|+ ||. ++++++++++.+.+.-+ .-.|+|+++.... ++ .|| +++++|++++|||+||++|.
T Consensus 76 ~~~n~-~g~----~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~---------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 76 FSGNL-YGT----SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT---------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp ETTEE-EEE----EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS---------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred ecCcc-CCC----CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc---------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 99998 773 47888888876432211 2245677765421 22 677 89999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 005203 671 ESEHNIKGVLRAVRS 685 (709)
Q Consensus 671 ~tE~~I~~~L~~l~~ 685 (709)
++|+.|++.|.+..+
T Consensus 140 ~~e~~i~~~l~~~~~ 154 (198)
T 1lvg_A 140 ETEESLAKRLAAART 154 (198)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999977653
No 88
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.78 E-value=3e-19 Score=211.60 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=62.9
Q ss_pred CCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 636 DLLSGGQKQRIAIARAILRDP--TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 636 ~~LSGGQkQRIaLARALlr~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
..|||||||||+|||||.++| ++|||||||++||++..+.+.+.|++++.. |.|+|+|+||++.+. .+|
T Consensus 378 ~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~---G~TVIvVeHdl~~l~-~aD 448 (842)
T 2vf7_A 378 PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG---GNSLFVVEHDLDVIR-RAD 448 (842)
T ss_dssp GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT---TCEEEEECCCHHHHT-TCS
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc---CCEEEEEcCCHHHHH-hCC
Confidence 489999999999999999999 599999999999999999999999998743 799999999999765 356
No 89
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.78 E-value=2.1e-20 Score=192.11 Aligned_cols=149 Identities=11% Similarity=0.124 Sum_probs=98.9
Q ss_pred CCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHH
Q 005203 514 MVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDIS 593 (709)
Q Consensus 514 ~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~ 593 (709)
+.++|+|+||++++|+++||+||||||||||+++|.|++ |.+.+| ..++.+++++||+....-|..
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 367999999999999999999999999999999999987 666554 468889999999754456899
Q ss_pred HHhccCC-------CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 005203 594 SNISYGC-------TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATS 666 (709)
Q Consensus 594 eNI~~g~-------~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTS 666 (709)
+|+.+.. +...+.+++.+.++. +..+.+..+ ..+||||+||+++ +|+..+|+++|||||..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~~--~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~ 144 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVEV--PTYDFVTHSRLPE-TTVVYPADVVLFEGILV 144 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEEE--CCEETTTTEECSS-CEEECCCSEEEEECTTT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCeec--ccccccccCccCc-eEEecCCCEEEEeCccc
Confidence 9986431 101223333333322 112222222 4799999999988 79999999999999887
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 667 ALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 667 aLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
..|.+ +.++. +.|++++||...
T Consensus 145 ~~~~~--------l~~~~-----~~~i~v~th~~~ 166 (245)
T 2jeo_A 145 FYSQE--------IRDMF-----HLRLFVDTDSDV 166 (245)
T ss_dssp TTSHH--------HHTTC-----SEEEEEECCHHH
T ss_pred cccHH--------HHHhc-----CeEEEEECCHHH
Confidence 77653 22221 489999999743
No 90
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.77 E-value=6.9e-21 Score=188.69 Aligned_cols=137 Identities=19% Similarity=0.234 Sum_probs=105.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHH
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQ 607 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e 607 (709)
||+++|+||||||||||+++|+|+++ ++| |.+||.+..++. .+++++|+++|+. .|+ ++|+.-... ..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~-~~~-- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGL-EPP-- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCC-CCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccc-cCC--
Confidence 89999999999999999999999999 999 999999986544 5799999999986 554 455543211 110
Q ss_pred HHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHH-HHHH---HhccCCCEEEEeC--CCCCCCHHHHHHHHHH
Q 005203 608 DIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRI-AIAR---AILRDPTILILDE--ATSALDAESEHNIKGV 679 (709)
Q Consensus 608 ~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRI-aLAR---ALlr~p~ILILDE--aTSaLD~~tE~~I~~~ 679 (709)
+...+..+|+ ..+|||||+++ +++| |+.++|++||||| ||..+|.+..+.+.+.
T Consensus 70 ------------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 70 ------------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp ------------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ------------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 1123447776 37999999999 6666 7899999999999 8988999887777777
Q ss_pred HHHhhccCCCCcEEEE----EecCh
Q 005203 680 LRAVRSDTMTRRTVLV----IAHRL 700 (709)
Q Consensus 680 L~~l~~~~~~~~TvIi----IAHRl 700 (709)
+++ ..|+|+ |+||.
T Consensus 132 l~~-------~~~~ilgti~vsh~~ 149 (189)
T 2i3b_A 132 LST-------PGTIILGTIPVPKGK 149 (189)
T ss_dssp HHC-------SSCCEEEECCCCCSS
T ss_pred HhC-------CCcEEEEEeecCCCC
Confidence 753 245553 44986
No 91
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.77 E-value=6e-19 Score=213.85 Aligned_cols=158 Identities=15% Similarity=0.117 Sum_probs=116.6
Q ss_pred CcEEEEE-----EEEEcCCCCCCccceeeeEEecC-------CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEe
Q 005203 498 GRIDFVD-----VSFRYSSREMVPVLQHVNISVNP-------GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFP 565 (709)
Q Consensus 498 ~~I~~~n-----VsF~Y~~~~~~~vL~~lsl~I~~-------Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~d 565 (709)
+.|+++| |+++|++. ..|++|+||++++ |+.++|+|||||||||++|.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD--DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------CC--CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecCC--ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 3599999 99999532 5799999999988 999999999999999999999 99874
Q ss_pred CCCCCHHHHhcceE-EEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHH
Q 005203 566 IKEVDIKWLRGRIG-FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQ 644 (709)
Q Consensus 566 i~~~~~~~lR~~I~-~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQ 644 (709)
..++| +|||++. .-|+.|||... - |+.|.+.. |.+.+|+|+++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r-i---------------g~~d~~~~---------~~stf~~em~~ 858 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR-L---------------GASDRIMS---------GESTFFVELSE 858 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEE-C---------------C------------------CHHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHH-c---------------CCHHHHhh---------chhhhHHHHHH
Confidence 34677 9999973 66788887421 1 12222211 22457887775
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHH-HHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESE-HNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE-~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+++||++..+|+++||||||+++|+... ..+.+.|+.+.+. .++|+|++||.++.+...+|
T Consensus 859 -~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~--~g~~vl~~TH~~el~~~~~d 920 (1022)
T 2o8b_B 859 -TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAET--IKCRTLFSTHYHSLVEDYSQ 920 (1022)
T ss_dssp -HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHT--SCCEEEEECCCHHHHHHTSS
T ss_pred -HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999999999999999874 5566777776532 25899999999998877665
No 92
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.77 E-value=1e-19 Score=196.71 Aligned_cols=171 Identities=14% Similarity=0.140 Sum_probs=131.0
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC-------CC
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE-------VD 570 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~-------~~ 570 (709)
..++.+|+++.|.. ...+++++ |+|++||+++|+||||||||||+++|+|+.+|+.|.|.++|++.++ +.
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence 45889999999973 25799999 9999999999999999999999999999999999999999976221 12
Q ss_pred HHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCccccc--CC-CCCChHHHHHHH
Q 005203 571 IKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLV--DD-DLLSGGQKQRIA 647 (709)
Q Consensus 571 ~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~v--Ge-~~LSGGQkQRIa 647 (709)
...+++.+.++.|.+ ....+++..+.....+.++... .|.+..+ .. .+||+|| ||++
T Consensus 121 ~~~~~~~v~~~~~~~-----------------~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~ 180 (347)
T 2obl_A 121 QSTLSKCVLVVTTSD-----------------RPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVG 180 (347)
T ss_dssp HHHHTTEEEEEECTT-----------------SCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHH
T ss_pred hhhhhceEEEEECCC-----------------CCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHH
Confidence 223445566666532 1124566666666666666544 4555433 23 4899999 9999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCc-----EEEEEecChh
Q 005203 648 IARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRR-----TVLVIAHRLI 701 (709)
Q Consensus 648 LARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~-----TvIiIAHRls 701 (709)
+| +.+|++ |++||+.....+.+.++++.+. ..|. |++++||+++
T Consensus 181 la---l~~p~~------t~Gldp~~~~~l~~ller~~~~-~~GsiT~~~tVl~~thdl~ 229 (347)
T 2obl_A 181 LA---SGEPDV------RGGFPPSVFSSLPKLLERAGPA-PKGSITAIYTVLLESDNVN 229 (347)
T ss_dssp HH---TTCCCC------BTTBCHHHHHHHHHHHTTCEEC-SSSEEEEEEEEECCSSCCC
T ss_pred HH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCC-CCCCeeeEEEEEEeCCCCC
Confidence 99 688887 9999999999999999887531 1257 9999999986
No 93
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.77 E-value=4.7e-21 Score=218.45 Aligned_cols=161 Identities=10% Similarity=0.041 Sum_probs=114.2
Q ss_pred EcCCCCCCccceeeeE-EecCCcEEEEEcCCCCcHHHHHHH--HhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEccc
Q 005203 508 RYSSREMVPVLQHVNI-SVNPGEVVAIAGLSGSGKSTLVNL--LLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQE 584 (709)
Q Consensus 508 ~Y~~~~~~~vL~~lsl-~I~~Ge~vAIVG~SGsGKSTLlkL--Llgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd 584 (709)
+|+.. .++|+++|+ .|++||.++|+||||||||||+++ +.|+++|.+|+|+++|.+. ..+....++.+|+++|+
T Consensus 20 ~~~~g--~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~ 96 (525)
T 1tf7_A 20 KMRTM--IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAK 96 (525)
T ss_dssp EECCC--CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHH
T ss_pred cccCC--chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHH
Confidence 45532 579999999 999999999999999999999999 6799999999999999883 23345567789999999
Q ss_pred CcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 005203 585 PKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEA 664 (709)
Q Consensus 585 ~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEa 664 (709)
+... +|+.+....+ + ++..++++..++.+...+.| ..|||| +|++++||||
T Consensus 97 ~~~~-----~~l~~~~~~~-~-~~~~~~l~~~~l~~~~~~~~---------~~LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 97 LVDE-----GKLFILDASP-D-PEGQEVVGGFDLSALIERIN---------YAIQKY-------------RARRVSIDSV 147 (525)
T ss_dssp HHHT-----TSEEEEECCC-C-SSCCSCCSSHHHHHHHHHHH---------HHHHHH-------------TCSEEEEECS
T ss_pred hhcc-----CcEEEEecCc-c-cchhhhhcccCHHHHHHHHH---------HHHHHc-------------CCCEEEECCH
Confidence 7632 2333221101 0 00011112222222222111 124555 5789999999
Q ss_pred CCC-----CCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 665 TSA-----LDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 665 TSa-----LD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
|+. ||+...+.+.+.++.+++. |+|+|+|+|+++.+
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~---g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQI---GATTVMTTERIEEY 188 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHH---TCEEEEEEECSSSS
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHC---CCEEEEEecCCCCc
Confidence 985 5889999999999888653 69999999999874
No 94
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.76 E-value=2e-20 Score=185.92 Aligned_cols=167 Identities=20% Similarity=0.213 Sum_probs=105.3
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC-----CCCcceEEE-------CCEeCC
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY-----EPTNGQILI-------DGFPIK 567 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~-----~p~~G~I~i-------dG~di~ 567 (709)
|+++|++|+|+ .+++++ |++++|++++|+|+||||||||++.|+|.. .|+.|.+.+ ++..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999996 257888 899999999999999999999999999998 899998765 233321
Q ss_pred ---CCC--------HHHHhcceEEEcccCccccc-CHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccc-cC
Q 005203 568 ---EVD--------IKWLRGRIGFVGQEPKLFRM-DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETL-VD 634 (709)
Q Consensus 568 ---~~~--------~~~lR~~I~~V~Qd~~LF~g-TI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~-vG 634 (709)
.+. .+.+++.++++.|+...+++ .+..|+..+. ...++++.+.++ . .+.... ++
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--~~~~~~~~~~~~---------~--~~~~~~~v~ 144 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL--KDLDQQMIEWAV---------D--SNIAVLVLL 144 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--CHHHHHHHHHHH---------H--TTCCEEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC--chhHHHHHHHHH---------H--cCCCeEEEE
Confidence 111 13456666666665444333 3344444331 111222332222 1 122222 23
Q ss_pred C--CCCChHHHHH-HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc
Q 005203 635 D--DLLSGGQKQR-IAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRS 685 (709)
Q Consensus 635 e--~~LSGGQkQR-IaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~ 685 (709)
. ..+|+||||| +..||+++++|+++++|||||++|.++...+.+.|.++.+
T Consensus 145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 3 3789999999 8999999999999999999999999999999999977653
No 95
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.76 E-value=5.9e-19 Score=208.02 Aligned_cols=146 Identities=21% Similarity=0.238 Sum_probs=113.8
Q ss_pred CCcEEEEEEEEEcCCC--CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCcceEEECCEeCCCCCHHH
Q 005203 497 MGRIDFVDVSFRYSSR--EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-PTNGQILIDGFPIKEVDIKW 573 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~--~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-p~~G~I~idG~di~~~~~~~ 573 (709)
.+.|++++. ++|-- .+..+++|+||+ |+.++|+||||||||||+|+++|+.. |+.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 456899988 55541 136899999999 99999999999999999999999974 7888753 1 1
Q ss_pred HhcceEEEcccCcccc-cCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 574 LRGRIGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 574 lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
.+..+++|+| +|. -++.||+.. .+|+|++|++.+|+++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il 650 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALIL 650 (765)
T ss_dssp SEEEECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHH
Confidence 2456888887 554 355665543 2589999999999999
Q ss_pred --ccCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 653 --LRDPTILILDEA---TSALDAESE-HNIKGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 653 --lr~p~ILILDEa---TSaLD~~tE-~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
..+|+++||||| ||+||..+. ..+.+.|.+ . |+|+|++||..+....
T Consensus 651 ~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~-~-----g~~vl~~TH~~~l~~~ 703 (765)
T 1ewq_A 651 KEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-R-----RAYTLFATHYFELTAL 703 (765)
T ss_dssp HHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-H-----TCEEEEECCCHHHHTC
T ss_pred HhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh-C-----CCEEEEEeCCHHHHHh
Confidence 999999999999 999999876 578888876 2 4899999999886543
No 96
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.76 E-value=1.4e-19 Score=190.87 Aligned_cols=166 Identities=16% Similarity=0.111 Sum_probs=112.8
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-eEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHH
Q 005203 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG-QILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (709)
Q Consensus 516 ~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G-~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (709)
++|+++++.+++|+.++|+||||||||||++.|+|...|++| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 579999999999999999999999999999999999999988 77665433 3556677666666655432 2334
Q ss_pred HhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHH-HHHHHHHHHhccCCCEEEEeCCCC---C---
Q 005203 595 NISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQ-KQRIAIARAILRDPTILILDEATS---A--- 667 (709)
Q Consensus 595 NI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQ-kQRIaLARALlr~p~ILILDEaTS---a--- 667 (709)
|+..+ ..++++..++++ +.+...+.+++.. ...+|.+| +||+. |+|+..+|+++|+||||+ +
T Consensus 97 ~l~~~---~~~~~~~~~~~~-----~~l~~~~l~i~~~--~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKRE---IIENGKFDQWFD-----ELFGNDTFHLYDS--FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHH---HHHHTHHHHHHH-----HHHSSSCEEEECC--CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccC---CCCHHHHHHHHH-----HHhccCCEEEECC--CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 55443 122233333222 2222223222211 03689999 77777 999999999999999999 4
Q ss_pred CCH-HHHHHHHHHHHHhhccCCCCcEEEEEecCh
Q 005203 668 LDA-ESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700 (709)
Q Consensus 668 LD~-~tE~~I~~~L~~l~~~~~~~~TvIiIAHRl 700 (709)
+|. +....+.+.|+++.++ .++|+|+++|..
T Consensus 166 ~d~~~~~~~i~~~L~~la~~--~~~~vi~vsh~~ 197 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKS--TGVVLVVICHLK 197 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHH--HCCEEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHHHHH--hCCeEEEEEecC
Confidence 444 4456788888777532 258999999995
No 97
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.75 E-value=2.3e-18 Score=195.87 Aligned_cols=67 Identities=21% Similarity=0.316 Sum_probs=61.6
Q ss_pred CC-ChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 637 LL-SGGQKQRIAIARAILRDP--TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 637 ~L-SGGQkQRIaLARALlr~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.| |||||||++|||||+.+| ++|||||||++||+.+...|.+.|+++.++ +|+|+|||+++.+.. +|
T Consensus 396 ~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~----~~vi~itH~~~~~~~-~d 465 (517)
T 4ad8_A 396 DVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADT----RQVLVVTHLAQIAAR-AH 465 (517)
T ss_dssp SSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHH----SEEEEECCCHHHHHH-SS
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCC----CEEEEEecCHHHHHh-CC
Confidence 56 999999999999999999 999999999999999999999999988753 899999999997764 55
No 98
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.75 E-value=4.4e-18 Score=184.47 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=53.4
Q ss_pred CCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecC
Q 005203 637 LLSGGQKQRIAIARAIL---------RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHR 699 (709)
Q Consensus 637 ~LSGGQkQRIaLARALl---------r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHR 699 (709)
.|||||+||++|||||. .+|+||+||||||+||+...+.+.+.|.++. .|+|++||.
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~------qt~i~~th~ 330 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP------QAIVTGTEL 330 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS------EEEEEESSC
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC------cEEEEEEec
Confidence 59999999999999999 8999999999999999999999999998763 699999993
No 99
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.74 E-value=1.2e-20 Score=199.13 Aligned_cols=129 Identities=11% Similarity=0.073 Sum_probs=96.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCC--
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQD-- 603 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~-- 603 (709)
+++.+|+|+|+||||||||+++|.+++.++ | . . ++.+.+|+||+++|++++++|+.++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g-------------~-~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y-------------G-G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H-------------G-G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C-------------C-C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 467899999999999999999999999874 2 0 1 56677779999999999999998763200
Q ss_pred CCHHHHHHHHHHHhhHHHHHcCCCCcccccC------C--CCCChHHHHHHHHH--HHhccCCCEEEEeCCCCCCCHHH
Q 005203 604 IKQQDIEWAAKQAYAHDFIMSLPSGYETLVD------D--DLLSGGQKQRIAIA--RAILRDPTILILDEATSALDAES 672 (709)
Q Consensus 604 ~~~e~i~~aa~~a~l~d~I~~LP~GydT~vG------e--~~LSGGQkQRIaLA--RALlr~p~ILILDEaTSaLD~~t 672 (709)
.+....-++.+.+.+.+++.+++.|++|..+ . .++||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000011233355778999999999988543 2 48999999999998 666 899999999999999864
No 100
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.73 E-value=4.8e-19 Score=188.08 Aligned_cols=151 Identities=17% Similarity=0.139 Sum_probs=102.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC----HHHH--hcceEEEcccCcccc-cCHHHHhccC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD----IKWL--RGRIGFVGQEPKLFR-MDISSNISYG 599 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~----~~~l--R~~I~~V~Qd~~LF~-gTI~eNI~~g 599 (709)
+|++++|||||||||||+++.|+|+++|++|+|.++|.|+.... +..| |..|++|+|++.++. .|+.||+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999987654 2333 467999999987664 3567776543
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHH
Q 005203 600 CTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT--ILILDEATSALDAESEHNIK 677 (709)
Q Consensus 600 ~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~--ILILDEaTSaLD~~tE~~I~ 677 (709)
. ..+.+..+...+...+. .+..++..++||.+||||+..+|+ +|.|| |+++.| +.
T Consensus 181 ~--------------~~~~d~~llDt~G~~~~--~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~~ 237 (304)
T 1rj9_A 181 K--------------ARGYDLLFVDTAGRLHT--KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------GL 237 (304)
T ss_dssp H--------------HHTCSEEEECCCCCCTT--CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------HH
T ss_pred H--------------hCCCCEEEecCCCCCCc--hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------HH
Confidence 1 01111111111111110 002357778999999999999999 66667 444443 33
Q ss_pred HHHHHhhccCCCCcEEEEEecChhh
Q 005203 678 GVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 678 ~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
+.++++.+. .+.|+|+|||...+
T Consensus 238 ~~~~~~~~~--~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 238 EQAKKFHEA--VGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHH--HCCSEEEEECTTSS
T ss_pred HHHHHHHHH--cCCcEEEEECCccc
Confidence 333333211 14899999998654
No 101
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.73 E-value=2.4e-17 Score=177.63 Aligned_cols=68 Identities=26% Similarity=0.403 Sum_probs=59.5
Q ss_pred CCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 637 LLSGGQKQ------RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 637 ~LSGGQkQ------RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.||||||| |+++||||..+|++|+|||||++||+++...+.+.|+++.++ +.|+|+|||+.+. ...+|
T Consensus 248 ~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~---~~~vi~~sH~~~~-~~~~d 321 (339)
T 3qkt_A 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK---IPQVILVSHDEEL-KDAAD 321 (339)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG---SSEEEEEESCGGG-GGGCS
T ss_pred HCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc---CCEEEEEEChHHH-HHhCC
Confidence 79999999 778899999999999999999999999999999999887543 5799999999764 44444
No 102
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.73 E-value=7e-19 Score=190.49 Aligned_cols=145 Identities=21% Similarity=0.203 Sum_probs=110.7
Q ss_pred cceee-eEEecCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCc----ce-EEECCEeCCCCCHHHHhcceEEEcccCccc
Q 005203 517 VLQHV-NISVNPGEVVAIAGLSGSGKSTLVNLLLRLY--EPTN----GQ-ILIDGFPIKEVDIKWLRGRIGFVGQEPKLF 588 (709)
Q Consensus 517 vL~~l-sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~--~p~~----G~-I~idG~di~~~~~~~lR~~I~~V~Qd~~LF 588 (709)
.|+++ ++.|++|++++|+||||||||||++.+++.+ +|++ |+ |+||+.+. + .++++++++|+..++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~----~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F----RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C----CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C----CHHHHHHHHHHcCCC
Confidence 45555 6899999999999999999999999999999 6766 67 99999775 1 256788999999999
Q ss_pred ccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc-------cCCCEEEE
Q 005203 589 RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL-------RDPTILIL 661 (709)
Q Consensus 589 ~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl-------r~p~ILIL 661 (709)
..++.|||.+... .+ |++|+|++.+|++++ .+|++||+
T Consensus 193 ~~~v~~ni~~~~~--~~---------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 193 PDEVLKHIYVARA--FN---------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp HHHHGGGEEEEEC--CS---------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred HHHHhhCEEEEec--CC---------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 9999999998742 22 345667777777776 68999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 662 DEATSALDAES------------EHNIKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 662 DEaTSaLD~~t------------E~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
||||+.+|++. -..+.+.|.++.+. .++|+|+++|..+...
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~--~~~tvii~~h~~~~~~ 290 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANL--YDIAVFVTNQVQARPD 290 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEECC----
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHH--cCcEEEEEcccccccc
Confidence 99999999863 13444445554322 2589999999876543
No 103
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.72 E-value=4.7e-19 Score=201.99 Aligned_cols=153 Identities=16% Similarity=0.091 Sum_probs=110.8
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
++.+++++.|++- ..+|. ..|++|++++|+||||||||||++.++|+..|+ |+ +.+.
T Consensus 258 ~~~~~l~~g~~~l--d~vL~---g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~ 314 (525)
T 1tf7_A 258 SSNVRVSSGVVRL--DEMCG---GGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAIL 314 (525)
T ss_dssp CCCCEECCSCHHH--HHHTT---SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEE
T ss_pred cccceeecChHHH--HHHhC---CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEE
Confidence 4556666655421 12343 489999999999999999999999999999885 54 1245
Q ss_pred EEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCC
Q 005203 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPT 657 (709)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ 657 (709)
+++|++. .++.+|..-. ..+.+++ .. .|+...... ..|||||+||+++||++..+|+
T Consensus 315 ~~~ee~~---~~l~~~~~~~---g~~~~~~------------~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~ 373 (525)
T 1tf7_A 315 FAYEESR---AQLLRNAYSW---GMDFEEM------------ER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPA 373 (525)
T ss_dssp EESSSCH---HHHHHHHHTT---SCCHHHH------------HH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCH---HHHHHHHHHc---CCCHHHH------------Hh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCC
Confidence 6667652 3555555322 1222211 11 122222222 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHH-----HHHHHHHHHHHhhccCCCCcEEEEEecCh
Q 005203 658 ILILDEATSALDAE-----SEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700 (709)
Q Consensus 658 ILILDEaTSaLD~~-----tE~~I~~~L~~l~~~~~~~~TvIiIAHRl 700 (709)
+||+| ||++||.. ..+.+.+.++.+++. |+|+|+|+|..
T Consensus 374 llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~---g~tvilvsh~~ 417 (525)
T 1tf7_A 374 RIAID-SLSALARGVSNNAFRQFVIGVTGYAKQE---EITGLFTNTSD 417 (525)
T ss_dssp EEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHT---TCEEEEEEECS
T ss_pred EEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhC---CCEEEEEECcc
Confidence 99999 99999999 888888888877643 69999999998
No 104
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=2.8e-19 Score=197.45 Aligned_cols=166 Identities=14% Similarity=0.149 Sum_probs=103.4
Q ss_pred CcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
+.|+++||+++|++ ..+++|+||+| +||||||||||||++.|+|+..|..| .+|.++... ....++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeee
Confidence 45899999999974 47999999998 99999999999999999999987666 245443321 1122467
Q ss_pred eEEEcccCccc-ccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCC
Q 005203 578 IGFVGQEPKLF-RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (709)
Q Consensus 578 I~~V~Qd~~LF-~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p 656 (709)
+++++|++.++ .-||.||+.++.. .+.++.++. +.++|.+ .++++++||++||||++++|
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~--~~~~~~~~~-----i~~~i~~------------~~~~~l~qr~~IaRal~~d~ 137 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDA--VDNSNCWQP-----VIDYIDS------------KFEDYLNAESRVNRRQMPDN 137 (418)
T ss_dssp EECC------CEEEEEEECC-------------CHH-----HHHHHHH------------HHHHHTTTSCC-CCCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhh--ccchhhHHH-----HHHHHHH------------HHHHHHHHHHHHHHHhccCC
Confidence 99999998877 7899999998843 222222221 2334432 25567789999999999999
Q ss_pred C---EEEEeCCC-CCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 657 T---ILILDEAT-SALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 657 ~---ILILDEaT-SaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
+ +|++|||| ++||+... .+. +.+.. +.++|+|.|+..++
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~-~~l---k~L~~----~v~iIlVinK~Dll 180 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDI-EFM---KRLHE----KVNIIPLIAKADTL 180 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHH-HHH---HHHTT----TSEEEEEEESTTSS
T ss_pred CeeEEEEEecCcccCCCHHHH-HHH---HHHhc----cCcEEEEEEcccCc
Confidence 9 99999999 58998763 333 33432 47899999887654
No 105
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.72 E-value=1.9e-19 Score=191.02 Aligned_cols=163 Identities=15% Similarity=0.124 Sum_probs=82.1
Q ss_pred EEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC-CCCCcceEEECCEeCCCCCHHHHhcceEEE
Q 005203 503 VDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL-YEPTNGQILIDGFPIKEVDIKWLRGRIGFV 581 (709)
Q Consensus 503 ~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl-~~p~~G~I~idG~di~~~~~~~lR~~I~~V 581 (709)
+||+++|.+ ..++++++|+| +|+||||+|||||++.|.|. ..|++| |.++|.++.. .. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 488999973 46999999998 99999999999999999998 889999 9999988754 21 2 4668999
Q ss_pred cccCccc-ccCHHHHhccCCCCCCCHHHHHHHHHH--HhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCE
Q 005203 582 GQEPKLF-RMDISSNISYGCTQDIKQQDIEWAAKQ--AYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTI 658 (709)
Q Consensus 582 ~Qd~~LF-~gTI~eNI~~g~~~~~~~e~i~~aa~~--a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~I 658 (709)
+|++.++ .-|+.||..++.. ..+.++.....+. ...+.++ ..+|||||||+.+|||+. +
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~-~~~~e~~~~l~~~l~~~~~~~~-------------~~~sgg~rqrv~~ara~~----l 130 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDA-INCRDCFKTIISYIDEQFERYL-------------HDESGLNRRHIIDNRVHC----C 130 (301)
T ss_dssp EC---CCEEEEEEEEC------------CTTHHHHHHHHHHHHH-------------HHHTSSCCTTCCCCCCCE----E
T ss_pred ecCCCcccCcchhhhhhhhhh-cCcHHHHHHHHHHHHHHHHHHH-------------HHhCHHhhhhhhhhhhhh----e
Confidence 9987654 6689999888642 1111111111111 0011111 248999999999999985 9
Q ss_pred EEEeCCCCC-CCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhh
Q 005203 659 LILDEATSA-LDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 659 LILDEaTSa-LD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
|++||||++ ||+... +.++++.++ .+.++|+..|++.+
T Consensus 131 l~ldePt~~~Ld~~~~----~~l~~l~~~--~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 131 FYFISPFGHGLKPLDV----AFMKAIHNK--VNIVPVIAKADTLT 169 (301)
T ss_dssp EEEECSSSSSCCHHHH----HHHHHHTTT--SCEEEEECCGGGSC
T ss_pred eeeecCcccCCCHHHH----HHHHHHHhc--CCEEEEEEeCCCCC
Confidence 999999986 999863 444444322 25788888999754
No 106
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.71 E-value=1.3e-18 Score=175.19 Aligned_cols=142 Identities=21% Similarity=0.164 Sum_probs=96.5
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-------CcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHh
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-------TNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNI 596 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-------~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI 596 (709)
-|++||.++|+||||||||||+++|+|++.| ..|.|++++.+. .. ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997665 455888888652 12 2357778898888888999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh-------ccCCCEEEEeCCCCCCC
Q 005203 597 SYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI-------LRDPTILILDEATSALD 669 (709)
Q Consensus 597 ~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL-------lr~p~ILILDEaTSaLD 669 (709)
.+... .+..+ |++++..++++ ..+|++++|||||+.+|
T Consensus 95 ~~~~~--~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVARA--FNSNH---------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEEC--CSHHH---------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEec--CChHH---------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 88743 22221 12222222222 34899999999999999
Q ss_pred HH-------HH-----HHHHHHHHHhhccCCCCcEEEEEec----ChhhhhhhcC
Q 005203 670 AE-------SE-----HNIKGVLRAVRSDTMTRRTVLVIAH----RLISTALSFD 708 (709)
Q Consensus 670 ~~-------tE-----~~I~~~L~~l~~~~~~~~TvIiIAH----Rlsti~~~~~ 708 (709)
++ .+ ..+.+.|.++.++ .++|+|+|+| ....+...+|
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~--~g~tvi~vtH~~~~~g~~~~~~~d 192 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANL--YDIAVFVTNQVQANGGHILAHSAT 192 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHH--HTCEEEEEEECC---------CCS
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHH--CCCeEEEEeecccCcchhhHhhce
Confidence 84 22 2566666555322 2589999999 4444555444
No 107
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.71 E-value=7.7e-18 Score=187.21 Aligned_cols=68 Identities=28% Similarity=0.366 Sum_probs=59.6
Q ss_pred CCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 637 LLSGGQKQRIAIARAIL----RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 637 ~LSGGQkQRIaLARALl----r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.||||||||++|||+|. ++|++|+||||||+||+.+...+.+.|+++.++ +.++|+|||+..+.. .+|
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~---~~~~ii~th~~~~~~-~~d 404 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP---DLQFIVISLKNTMFE-KSD 404 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBT---TBEEEEECSCHHHHT-TCS
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcC---CCEEEEEECCHHHHH-hCC
Confidence 49999999999999999 689999999999999999999999999887532 479999999987654 344
No 108
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.68 E-value=2e-18 Score=176.09 Aligned_cols=171 Identities=12% Similarity=0.103 Sum_probs=107.0
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh--cCCCCCcceEEECCEeCCCCCHHHHhcc
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL--RLYEPTNGQILIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLl--gl~~p~~G~I~idG~di~~~~~~~lR~~ 577 (709)
++++++++.|++-+ .++.+ .|++||.++|+||||||||||+++|+ |+.++.+|.+.+++.+... .....++.
T Consensus 7 ~~~~~i~tg~~~lD--~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPGFD--ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTTTG--GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHhHH--HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 56777877776431 34444 79999999999999999999999999 7767788888888754321 23344567
Q ss_pred eEEEcccCcccc-cCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCC
Q 005203 578 IGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDP 656 (709)
Q Consensus 578 I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p 656 (709)
+++++|+...+. -++.++..... ....++ .+ .. ....+-++.++...+..-..+|
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----------~~---------~~--~~~~~~~~~~~~~~~~l~~~~p 136 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVV--GLPSEE-----------KF---------VL--EDRFNVDNFLRYIYRVVKAINA 136 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC-------------------------------------------CCHHHHHHHHHHHHHHTTC
T ss_pred cCCChHHHhhcCCEEEEEcccccc--cccccc-----------ce---------ec--cCcccHHHHHHHHHHHHHhhCC
Confidence 888888764331 12222221110 000000 00 00 0112344545444444445799
Q ss_pred CEEEEeCCCCCCC-----HHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 657 TILILDEATSALD-----AESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 657 ~ILILDEaTSaLD-----~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
++++|||||+.|| ....+.+.+.++.+++. |+|+|+++|.++.+
T Consensus 137 ~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~---g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 137 KRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM---GVTTILTTEAPDPQ 185 (251)
T ss_dssp SEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH---CCEEEEEECCC---
T ss_pred CEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHC---CCeEEEEECCCCCC
Confidence 9999999999997 66666688888777643 69999999998876
No 109
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.68 E-value=8.1e-19 Score=203.13 Aligned_cols=168 Identities=15% Similarity=0.244 Sum_probs=106.8
Q ss_pred cEEEEEEEEEcCCCCCCccceee----------eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CcceEEECCEeCC
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHV----------NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-TNGQILIDGFPIK 567 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~l----------sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-~~G~I~idG~di~ 567 (709)
.++++|+++.|++. ..++|+.+ ++++|. +|||||||||||||+++|+|++.| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58899999999753 24566655 377776 999999999999999999999989 7999999999963
Q ss_pred C---CCHHHHhcceEEEcccCcccc-cCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHH
Q 005203 568 E---VDIKWLRGRIGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQK 643 (709)
Q Consensus 568 ~---~~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQk 643 (709)
. -....+|+.|+||+|++.++. .|++|||.+.. +. +..... .+| +
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~-------------~~------~~~~~~---------~~s---~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ-------------NA------IAGEGM---------GIS---H 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH-------------HH------HHCSSS---------CCC---S
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH-------------HH------hcCCcc---------ccc---h
Confidence 2 124578999999999998764 57888876431 11 111011 111 2
Q ss_pred HHHHHHHHhccCCCEEEEeCC------CCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhh
Q 005203 644 QRIAIARAILRDPTILILDEA------TSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 644 QRIaLARALlr~p~ILILDEa------TSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
+++.++.+...+|+++++||| |++||+..++.+.+.++++.++ ..+.++++++|.+..
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~-~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR-QETISLVVVPSNVDI 198 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS-SSCCEEEEEESSSCT
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc-CCCCceEEEeccchh
Confidence 444555555668999999999 9999999999999999885322 135788999998763
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.67 E-value=3.2e-17 Score=177.63 Aligned_cols=135 Identities=24% Similarity=0.275 Sum_probs=100.6
Q ss_pred EEEEEEcCCCCCCccceeeeE-------EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-cceEEECCEeCCCCCHHHH
Q 005203 503 VDVSFRYSSREMVPVLQHVNI-------SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-NGQILIDGFPIKEVDIKWL 574 (709)
Q Consensus 503 ~nVsF~Y~~~~~~~vL~~lsl-------~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~-~G~I~idG~di~~~~~~~l 574 (709)
.+++++|.+. .++.|+++.+ .+++|+.++|+||||||||||+++|+|+++|+ +|.|...+.++. +. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---h
Confidence 5889999754 4678888887 78899999999999999999999999999997 577765554443 22 2
Q ss_pred hcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhcc
Q 005203 575 RGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILR 654 (709)
Q Consensus 575 R~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr 654 (709)
+...++++|.+.-. . ..+-.+ +|||||..
T Consensus 167 ~~~~~~v~q~~~~~------------~-~~~~~~--------------------------------------~La~aL~~ 195 (356)
T 3jvv_A 167 ESKKCLVNQREVHR------------D-TLGFSE--------------------------------------ALRSALRE 195 (356)
T ss_dssp CCSSSEEEEEEBTT------------T-BSCHHH--------------------------------------HHHHHTTS
T ss_pred hccccceeeeeecc------------c-cCCHHH--------------------------------------HHHHHhhh
Confidence 34456677754311 0 111111 99999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 655 DPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 655 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
+|+++++|||| |.++...+.++. . .|+|+|+++|..+.+
T Consensus 196 ~PdvillDEp~---d~e~~~~~~~~~---~----~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 196 DPDIILVGEMR---DLETIRLALTAA---E----TGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCSEEEESCCC---SHHHHHHHHHHH---H----TTCEEEEEESCSSHH
T ss_pred CcCEEecCCCC---CHHHHHHHHHHH---h----cCCEEEEEEccChHH
Confidence 99999999999 777755544442 2 258999999999876
No 111
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.65 E-value=5e-17 Score=194.13 Aligned_cols=142 Identities=24% Similarity=0.262 Sum_probs=100.1
Q ss_pred HHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCC-----C-CCHHHHHHHHHH
Q 005203 542 STLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQ-----D-IKQQDIEWAAKQ 615 (709)
Q Consensus 542 STLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~-----~-~~~e~i~~aa~~ 615 (709)
+|+-.+.-+.+.|++|+|.++|+++.++.. .|+.||+.+...- + .-.+++.+..+
T Consensus 382 ~~C~~C~g~rl~~~~~~V~i~G~~i~~~~~------------------~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~- 442 (916)
T 3pih_A 382 RTCSVCGGRRLNREALSVKINGLNIHEFTE------------------LSISEELEFLKNLNLTEREREIVGELLKEIE- 442 (916)
T ss_dssp EECTTTCSCCBCTTGGGEEETTEEHHHHHH------------------SBHHHHHHHHHSCCCCTTTTTTHHHHHHHHH-
T ss_pred ccchhcccccCChHhcCcEECCccHHHhhh------------------CCHHHHHHHHHhccCcHHHHHHHHhhHHHHH-
Confidence 455667778899999999999999865332 3444554432110 1 01112222111
Q ss_pred HhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCc
Q 005203 616 AYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPT--ILILDEATSALDAESEHNIKGVLRAVRSDTMTRR 691 (709)
Q Consensus 616 a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~--ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~ 691 (709)
...+++..+-.+|.+ .+. ..||||||||++|||||.++|+ +|||||||++||+.....+.+.|+++++. |+
T Consensus 443 -~~~~~L~~vgL~~l~-l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~---G~ 517 (916)
T 3pih_A 443 -KRLEFLVDVGLEYLT-LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL---GN 517 (916)
T ss_dssp -HHHHHHHTTTCTTCB-TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT---TC
T ss_pred -HHHHHHHHcCCcccc-ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc---CC
Confidence 123455554333322 233 4899999999999999999887 99999999999999999999999998643 79
Q ss_pred EEEEEecChhhhhhhcC
Q 005203 692 TVLVIAHRLISTALSFD 708 (709)
Q Consensus 692 TvIiIAHRlsti~~~~~ 708 (709)
|+|+|+|+++.+.. +|
T Consensus 518 TvivVtHd~~~~~~-aD 533 (916)
T 3pih_A 518 TVIVVEHDEEVIRN-AD 533 (916)
T ss_dssp EEEEECCCHHHHHT-CS
T ss_pred EEEEEeCCHHHHHh-CC
Confidence 99999999998765 55
No 112
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.65 E-value=1.6e-15 Score=181.86 Aligned_cols=148 Identities=17% Similarity=0.162 Sum_probs=102.7
Q ss_pred CcEEEEEEEEEcCCC--CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHH--------hcCCCCCcceEEECCEeCC
Q 005203 498 GRIDFVDVSFRYSSR--EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLL--------LRLYEPTNGQILIDGFPIK 567 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~--~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLL--------lgl~~p~~G~I~idG~di~ 567 (709)
+.|++++...-+-.. ....|++|+||++++|+.++|+|||||||||++|.+ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458888875444221 135799999999999999999999999999999999 77776665432
Q ss_pred CCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHH
Q 005203 568 EVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIA 647 (709)
Q Consensus 568 ~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIa 647 (709)
++.+ +.+|. .+| +.|.+ ...+|+|++|+..
T Consensus 702 ----------~~~~---d~i~~-------~ig------------------~~d~l------------~~~lStf~~e~~~ 731 (934)
T 3thx_A 702 ----------VSIV---DCILA-------RVG------------------AGDSQ------------LKGVSTFMAEMLE 731 (934)
T ss_dssp ----------EECC---SEEEE-------ECC---------------------------------------CHHHHHHHH
T ss_pred ----------chHH---HHHHH-------hcC------------------chhhH------------HHhHhhhHHHHHH
Confidence 1111 01111 011 00111 1247888888888
Q ss_pred HHHHh--ccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 648 IARAI--LRDPTILILDEATSALDAESEHNI-KGVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 648 LARAL--lr~p~ILILDEaTSaLD~~tE~~I-~~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
+|+++ ..+|+++||||||+++|+.....+ ...++.+.++ .|+|+|++||..+....
T Consensus 732 ~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~--~g~~vl~aTH~~el~~l 790 (934)
T 3thx_A 732 TASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATK--IGAFCMFATHFHELTAL 790 (934)
T ss_dssp HHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHT--TCCEEEEEESCGGGGGG
T ss_pred HHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc--CCCEEEEEcCcHHHHHH
Confidence 88888 999999999999999999888777 4445665431 25899999999875543
No 113
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.65 E-value=1.8e-18 Score=184.85 Aligned_cols=159 Identities=21% Similarity=0.206 Sum_probs=115.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC--------CCCcceEEECCEeCCCCC---------------HHHHhcceEEE---
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRLY--------EPTNGQILIDGFPIKEVD---------------IKWLRGRIGFV--- 581 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl~--------~p~~G~I~idG~di~~~~---------------~~~lR~~I~~V--- 581 (709)
=+.++|+|+||||||||+|.|+|++ .|+.|+|.+||.++...+ ..++++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3689999999999999999999998 889999999999998763 45778889988
Q ss_pred cccCc-ccccCHHHHhccCCCCCCCHHHHHHHH-HHHhhHHHHHcCCCCcccccCC-------CCCChHHHHHHHHHHHh
Q 005203 582 GQEPK-LFRMDISSNISYGCTQDIKQQDIEWAA-KQAYAHDFIMSLPSGYETLVDD-------DLLSGGQKQRIAIARAI 652 (709)
Q Consensus 582 ~Qd~~-LF~gTI~eNI~~g~~~~~~~e~i~~aa-~~a~l~d~I~~LP~GydT~vGe-------~~LSGGQkQRIaLARAL 652 (709)
+|++. .|+.++.||..+++| +.+.+.. ......+. ..+ ++.-|.++- .++||||+||...+|++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p-----~~~~~~~~~~~~~~~~-~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~il 156 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADP-----GPIIQTFFSHEVLCQR-YLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRIL 156 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCH-----HHHHHHHHHSHHHHHH-EEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEE
T ss_pred HhcCCCCCCEEEEeCCCCCCH-----HHHHHHHhcCccccCe-EEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEE
Confidence 68876 479999999998854 2232221 00000000 011 122233332 16899999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 653 LRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
+.+|+++ ||| +.+.+.|+++.+ +.|+++++|++.....-+|
T Consensus 157 l~k~dl~--de~---------~~l~~~l~~l~~----~~~ii~~sh~~~~~~~l~~ 197 (318)
T 1nij_A 157 LTKTDVA--GEA---------EKLHERLARINA----RAPVYTVTHGDIDLGLLFN 197 (318)
T ss_dssp EECTTTC--SCT---------HHHHHHHHHHCS----SSCEEECCSSCCCGGGGSC
T ss_pred EECcccC--CHH---------HHHHHHHHHhCC----CCeEEEecccCCCHHHHhC
Confidence 9999877 888 677778877643 5899999998655444333
No 114
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.63 E-value=5.8e-17 Score=178.57 Aligned_cols=179 Identities=17% Similarity=0.199 Sum_probs=117.3
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcE--EEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhc
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEV--VAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG 576 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~--vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~ 576 (709)
.+++++ +++|++ .+ |+++||+|++|+. +|||||||||||||+|+|+|+. ++|.++........++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 466777 888964 34 9999999999999 9999999999999999999994 5666665544455677
Q ss_pred ceEEEcccCccc-ccCHHHHhccCCCCCCCHHHHHH----HHHHHhhHHHHHcC-------CCCccccc-------CC--
Q 005203 577 RIGFVGQEPKLF-RMDISSNISYGCTQDIKQQDIEW----AAKQAYAHDFIMSL-------PSGYETLV-------DD-- 635 (709)
Q Consensus 577 ~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~~~e~i~~----aa~~a~l~d~I~~L-------P~GydT~v-------Ge-- 635 (709)
.+++|+|++.++ .-|+.||+.++. ..+.+.-+. .++. ...+++... +..-|+.| -+
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~--~~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGD--QINKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC---CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eEEEEeecCccccccchhhhhhhhh--ccccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 899999999887 679999999984 344332111 1221 233333322 22234432 12
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hhccCCCCcEEEEEecC
Q 005203 636 DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRA-VRSDTMTRRTVLVIAHR 699 (709)
Q Consensus 636 ~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~-l~~~~~~~~TvIiIAHR 699 (709)
..|+-.+ +.++|+|..+++++++||+|..|.++.-..+.+.|++ +.. .|.+++.|+..
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~---~gi~I~~is~~ 218 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS---NGVQIYQFPTD 218 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT---TBCCCCCCC--
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH---cCCcEEecCCC
Confidence 2566665 8999999999999999999999988766777777765 643 36888888753
No 115
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.63 E-value=1.9e-19 Score=180.40 Aligned_cols=150 Identities=14% Similarity=0.034 Sum_probs=111.1
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCC
Q 005203 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDI 604 (709)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~ 604 (709)
.++|+++||+||||||||||+++|+|+++|+ | ..+++|+||++.++.+..+|+......+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999987 5 46899999999999998888753211011
Q ss_pred CHHHHHHHHHHHhhHHHHHcCCCC--cccccCC--CCCChHHHHHHHHH-HHhccCCCEEEEeCCC-----------CCC
Q 005203 605 KQQDIEWAAKQAYAHDFIMSLPSG--YETLVDD--DLLSGGQKQRIAIA-RAILRDPTILILDEAT-----------SAL 668 (709)
Q Consensus 605 ~~e~i~~aa~~a~l~d~I~~LP~G--ydT~vGe--~~LSGGQkQRIaLA-RALlr~p~ILILDEaT-----------SaL 668 (709)
..+.+...+.+++..++.| +++.+.+ ..+||||+||+++| |+++.++.++++|||. ..+
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~v 154 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRL 154 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEE
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEE
Confidence 1122233444555555555 5666666 37899999999999 9999999999999985 457
Q ss_pred CHHHHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 669 DAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 669 D~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
|...|..+...+++..+. |+|..-+.||..
T Consensus 155 d~~~~~~~~R~~~R~~~~---g~t~~~~~~~~~ 184 (208)
T 3c8u_A 155 EVPMADLEARLVQRWLDH---GLNHDAAVARAQ 184 (208)
T ss_dssp CCCHHHHHHHHHHHHHHT---TCCHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHhc---CCCHHHHHHHHH
Confidence 888888888777664321 456655555554
No 116
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.62 E-value=1.9e-16 Score=165.66 Aligned_cols=151 Identities=16% Similarity=0.242 Sum_probs=100.6
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhc-cCCCC
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNIS-YGCTQ 602 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~-~g~~~ 602 (709)
.+++|+.++|+||||||||||++.+++... .|++. .|.+... +..+.|+..+... ..+.+++. ++ .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g-~- 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALG-A- 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHH-T-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHH-h-
Confidence 488999999999999999999999998664 57763 4544321 3467888777643 22333332 23 1
Q ss_pred CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCC--CCCHHHH---HH
Q 005203 603 DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATS--ALDAESE---HN 675 (709)
Q Consensus 603 ~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTS--aLD~~tE---~~ 675 (709)
+.++++..++.+...+ ....+. ..||+||+|++ |+++++|+++|+||||+ ++|..+. ..
T Consensus 93 ~~~~~~~~~~~~~l~l-----------~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 HLSAEERQAVADGLLI-----------QPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp TSCHHHHHHHHHHEEE-----------CCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred hcChhhhhhccCceEE-----------eecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 3344443333333322 222222 47999998875 78999999999999999 9998655 67
Q ss_pred HHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 676 IKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 676 I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
+.+.|+++.++ .|+|+|+|+|.....
T Consensus 159 ~~~~L~~l~~~--~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 159 VIGRMEAIAAD--TGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHH--HCCEEEEEEEC----
T ss_pred HHHHHHHHHHH--cCCEEEEEecCCCcc
Confidence 77777776422 269999999987654
No 117
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.62 E-value=7.1e-16 Score=146.65 Aligned_cols=77 Identities=23% Similarity=0.359 Sum_probs=65.5
Q ss_pred Cccccc----CC---CCCChHHHHHHHHH------HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEE
Q 005203 628 GYETLV----DD---DLLSGGQKQRIAIA------RAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVL 694 (709)
Q Consensus 628 GydT~v----Ge---~~LSGGQkQRIaLA------RALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvI 694 (709)
+|++.+ .+ .+||||||||++|| |||+++|++|+|||||++||+++...+.+.|+++.++ ++|+|
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~---~~tii 117 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK---IPQVI 117 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG---SSEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc---CCEEE
Confidence 677765 12 38999999999876 9999999999999999999999999999999987543 58999
Q ss_pred EEecChhhhhhhcC
Q 005203 695 VIAHRLISTALSFD 708 (709)
Q Consensus 695 iIAHRlsti~~~~~ 708 (709)
+|||++. +...+|
T Consensus 118 ivsH~~~-~~~~~d 130 (148)
T 1f2t_B 118 LVSHDEE-LKDAAD 130 (148)
T ss_dssp EEESCGG-GGGGCS
T ss_pred EEEChHH-HHHhCC
Confidence 9999995 455555
No 118
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.60 E-value=4.8e-16 Score=185.99 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=101.4
Q ss_pred CcEEEEEEEEEcC----CCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCcceEEECCEeCCCCCHH
Q 005203 498 GRIDFVDVSFRYS----SREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-PTNGQILIDGFPIKEVDIK 572 (709)
Q Consensus 498 ~~I~~~nVsF~Y~----~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-p~~G~I~idG~di~~~~~~ 572 (709)
+.|++++..--.- +..+..|++|+||++++|+.++|+|||||||||++|++.++.- ++.|
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g--------------- 703 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG--------------- 703 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC---------------
Confidence 3577777532220 1113689999999999999999999999999999999875321 1111
Q ss_pred HHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 573 WLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
.+||++..-+ ++.++|. . . .++.|.+.. |-+.+|+|++|+..|+|+
T Consensus 704 ------~~vpa~~~~i--~~~d~i~-~---~------------ig~~d~l~~---------~~stfs~em~~~~~il~~- 749 (918)
T 3thx_B 704 ------SYVPAEEATI--GIVDGIF-T---R------------MGAADNIYK---------GRSTFMEELTDTAEIIRK- 749 (918)
T ss_dssp ------CCBSSSEEEE--ECCSEEE-E---E------------C-------------------CCHHHHHHHHHHHHHH-
T ss_pred ------ccccchhhhh--hHHHHHH-H---h------------CChHHHHHH---------hHHHhhHHHHHHHHHHHh-
Confidence 1222221100 0001110 0 0 011111111 124689999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhhccCCCCcEEEEEecChhhhhh
Q 005203 653 LRDPTILILDEATSALDAESEHNIK-GVLRAVRSDTMTRRTVLVIAHRLISTAL 705 (709)
Q Consensus 653 lr~p~ILILDEaTSaLD~~tE~~I~-~~L~~l~~~~~~~~TvIiIAHRlsti~~ 705 (709)
..+|+++||||||++||+.....+. ..++.+.++ .|+|+|++||.++....
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~--~g~tvl~vTH~~el~~l 801 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRD--VKSLTLFVTHYPPVCEL 801 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHT--TCCEEEEECSCGGGGGH
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh--cCCeEEEEeCcHHHHHH
Confidence 8999999999999999999888887 555665421 26899999999876543
No 119
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.60 E-value=1.3e-16 Score=160.48 Aligned_cols=152 Identities=10% Similarity=0.037 Sum_probs=106.4
Q ss_pred CccceeeeE-EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhc---ceEEEcccCccccc
Q 005203 515 VPVLQHVNI-SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG---RIGFVGQEPKLFRM 590 (709)
Q Consensus 515 ~~vL~~lsl-~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~---~I~~V~Qd~~LF~g 590 (709)
.+.|+++.. .+++|+.++|+||||||||||++.+++...+++|.|.+.+.+. +...+++ .+++.+|+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~---- 81 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI---- 81 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh----
Confidence 467889887 8999999999999999999999999999988889998876554 2333332 3444444321
Q ss_pred CHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCC
Q 005203 591 DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPT--ILILDEATSAL 668 (709)
Q Consensus 591 TI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~--ILILDEaTSaL 668 (709)
.+++...+. ... . .+ + .+ .....|++|.++.+.+.+...+|+ ++|+||||+.+
T Consensus 82 --~~~~~~~~~--~~~-~-------~~--------~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 82 --EKKLIIIDA--LMK-E-------KE--------D-QW----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp --TTTEEEEEC--CC--------------------C-TT----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred --hCCEEEEec--ccc-c-------cC--------c-ee----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 112222211 110 0 00 0 00 112349999999988888878999 99999999888
Q ss_pred --CHHHHHHHHHHHHHhhccCCCCcEEEEEecCh
Q 005203 669 --DAESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700 (709)
Q Consensus 669 --D~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRl 700 (709)
|+.....+.+.|+++.++ .++|+|+++|..
T Consensus 137 ~~d~~~~~~~~~~l~~~~~~--~~~~vi~~~h~~ 168 (235)
T 2w0m_A 137 LDKPAMARKISYYLKRVLNK--WNFTIYATSQYA 168 (235)
T ss_dssp SSCGGGHHHHHHHHHHHHHH--TTEEEEEEEC--
T ss_pred cCCHHHHHHHHHHHHHHHHh--CCCeEEEEeccC
Confidence 998888898888877532 268999999998
No 120
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.59 E-value=2e-16 Score=160.27 Aligned_cols=127 Identities=16% Similarity=0.173 Sum_probs=94.7
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCH-----HH
Q 005203 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP--TNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDI-----SS 594 (709)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p--~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI-----~e 594 (709)
.-..++|+.++|+||||||||||+++|+|+++| .+|.|.+++.+.+. ..++.++|++|++.+|...+ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 446899999999999999999999999999986 78999999877643 34678999999999987644 47
Q ss_pred HhccCCCC-CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 005203 595 NISYGCTQ-DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673 (709)
Q Consensus 595 NI~~g~~~-~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE 673 (709)
|+.++... ..+.+++ ++++.+++++||| ||+++.
T Consensus 86 ~~~~~~~~yg~~~~~v----------------------------------------~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 86 HAEVFGNYYGTSREAI----------------------------------------EQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp EEEETTEEEEEEHHHH----------------------------------------HHHHTTTCEEEEE-----CCHHHH
T ss_pred HHHHHhccCCCCHHHH----------------------------------------HHHHhcCCeEEEE-----ECHHHH
Confidence 77654210 0112222 2233346999999 999999
Q ss_pred HHHHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 674 HNIKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 674 ~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
+.+.+.+. + ++|+++++|+++.+.
T Consensus 121 ~~i~~~l~---~----~~tI~i~th~~~~l~ 144 (219)
T 1s96_A 121 QQIRQKMP---H----ARSIFILPPSKIELD 144 (219)
T ss_dssp HHHHHHCT---T----CEEEEEECSSHHHHH
T ss_pred HHHHHHcc---C----CEEEEEECCCHHHHH
Confidence 99988775 1 489999999998764
No 121
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.56 E-value=3.9e-15 Score=148.70 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=89.6
Q ss_pred CccceeeeE-EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHH
Q 005203 515 VPVLQHVNI-SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDIS 593 (709)
Q Consensus 515 ~~vL~~lsl-~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~ 593 (709)
-+.|+++.. .+++|+.++|+||||||||||++.+++ ++..+.+++++.+ ..+...+++.
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~~---------------- 65 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQM---------------- 65 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHHH----------------
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHHH----------------
Confidence 346777765 799999999999999999999999999 4444555555432 1223332221
Q ss_pred HHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChH--HHHHHHHHHHhccC-CCEEEEeCCCCCCCH
Q 005203 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGG--QKQRIAIARAILRD-PTILILDEATSALDA 670 (709)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGG--QkQRIaLARALlr~-p~ILILDEaTSaLD~ 670 (709)
.... ..+.+++ ...+ .+ ...|++ |+|+++.+|+++++ |+++|+||||+.+|.
T Consensus 66 --~~~~---~~~~~~~------------~~~~------~~--~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 66 --AETR---GLNPEEA------------LSRF------IL--FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp --HHTT---TCCHHHH------------HHHE------EE--ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred --HHhc---CCChHHH------------hhcE------EE--EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 1100 1112221 1111 01 123444 47899999999986 999999999999998
Q ss_pred HHH--------HHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 671 ESE--------HNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 671 ~tE--------~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
..+ ..+.+.|+++.++ .++|+|+++|...
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~--~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARK--HNIPVIVINQVHF 157 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHH--HTCCEEEEECSSS
T ss_pred cCchHHHHHHHHHHHHHHHHHHHH--cCCEEEEEeeEEE
Confidence 543 3344456655432 2589999999865
No 122
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.56 E-value=3.8e-17 Score=160.25 Aligned_cols=138 Identities=14% Similarity=0.055 Sum_probs=91.9
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCC
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQD 603 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~ 603 (709)
.+++|+.++|+||||||||||+++|+|. |..|.|.+||.++.... .-++.++|++|++. .+.|+.||+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~~-- 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVAG-- 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHHH--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHHH--
Confidence 4889999999999999999999999998 78899999997764322 11345788888765 56678888765310
Q ss_pred CCHHHHHHHHHHHhhHHHHHcCC--CCccccc--CC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH
Q 005203 604 IKQQDIEWAAKQAYAHDFIMSLP--SGYETLV--DD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIK 677 (709)
Q Consensus 604 ~~~e~i~~aa~~a~l~d~I~~LP--~GydT~v--Ge--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~ 677 (709)
. .. ..+-...++... .+++..- +. ..+|+||+||+++||++.++|+++ +|++..+.+.
T Consensus 78 -----~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 78 -----R--YA-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp -----H--HH-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred -----H--Hh-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 0 00 000000000000 0111000 11 369999999999999999999876 6887777777
Q ss_pred HHHHHhh
Q 005203 678 GVLRAVR 684 (709)
Q Consensus 678 ~~L~~l~ 684 (709)
+.++.+.
T Consensus 142 ~~~~~l~ 148 (191)
T 1zp6_A 142 SQFADLG 148 (191)
T ss_dssp HHTTCCG
T ss_pred HHHhccC
Confidence 7665543
No 123
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.56 E-value=3.2e-15 Score=177.71 Aligned_cols=131 Identities=21% Similarity=0.341 Sum_probs=95.6
Q ss_pred CCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHH-------HHHHHHHHhhHHHHHc
Q 005203 552 YEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQD-------IEWAAKQAYAHDFIMS 624 (709)
Q Consensus 552 ~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~-------i~~aa~~a~l~d~I~~ 624 (709)
|.|....|.|+|.+|.+ +...||.|++.|+..-..++++ +.+..+.. +++..
T Consensus 432 l~~~~l~v~~~g~~i~q------------------~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~ 490 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIGE------------------VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQN 490 (972)
T ss_dssp BCTTTTTEESSSCBHHH------------------HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHH
T ss_pred cCHHHheeEECCCcHHH------------------HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhh
Confidence 67888899999987653 5567888888886422223311 12222222 23443
Q ss_pred CCCCcccccCC--CCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecCh
Q 005203 625 LPSGYETLVDD--DLLSGGQKQRIAIARAILRDP--TILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700 (709)
Q Consensus 625 LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRl 700 (709)
+-.+|-+ .+. .+|||||||||+||+||..+| ++|||||||++||+..-+.+.+.|+++++. |.|+|+|+||+
T Consensus 491 vGL~~l~-ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~---G~TVIvVeHdl 566 (972)
T 2r6f_A 491 VGLDYLT-LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL---GNTLIVVEHDE 566 (972)
T ss_dssp HTCTTSB-SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT---TCEEEEECCCH
T ss_pred CCCCccc-cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhC---CCEEEEEecCH
Confidence 3223222 232 489999999999999999984 999999999999999999999999999743 79999999999
Q ss_pred hhhhhhcC
Q 005203 701 ISTALSFD 708 (709)
Q Consensus 701 sti~~~~~ 708 (709)
+++. .+|
T Consensus 567 ~~i~-~AD 573 (972)
T 2r6f_A 567 DTML-AAD 573 (972)
T ss_dssp HHHH-SCS
T ss_pred HHHH-hCC
Confidence 9876 466
No 124
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.53 E-value=1.2e-17 Score=179.96 Aligned_cols=178 Identities=15% Similarity=0.143 Sum_probs=120.7
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC----HHHHh
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD----IKWLR 575 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~----~~~lR 575 (709)
|+++|++++|.+ ..+++++|+++++|+.++|+||+|||||||++.|+|++.|++|+|.++|.|..... ....|
T Consensus 30 ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 667788888853 46999999999999999999999999999999999999999999999999985432 13457
Q ss_pred cceEEEcccCccccc-------------CHHHHhcc---C-------CCCCC--CHHHHHHHHHH-------------Hh
Q 005203 576 GRIGFVGQEPKLFRM-------------DISSNISY---G-------CTQDI--KQQDIEWAAKQ-------------AY 617 (709)
Q Consensus 576 ~~I~~V~Qd~~LF~g-------------TI~eNI~~---g-------~~~~~--~~e~i~~aa~~-------------a~ 617 (709)
.++++|+|++.+|.. +++|.+.. . +.... ++..+.+.++. ..
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 889999999999852 12222200 0 00000 11111110000 00
Q ss_pred hHHHHHcCCCCcc-cccC--C-CCCChHHHHHHHHHHHhcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q 005203 618 AHDFIMSLPSGYE-TLVD--D-DLLSGGQKQRIAIARAILR------DPTILILDEATSALDAESEHNIKGVLRAVR 684 (709)
Q Consensus 618 l~d~I~~LP~Gyd-T~vG--e-~~LSGGQkQRIaLARALlr------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~ 684 (709)
+.+.+...|.-+- +.+. + ..+|+||+|++..|++++. +|+++. ||++|.+.-..+.+.|.+..
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 0001111121000 1111 1 2579999999999999998 688887 99999999999988887654
No 125
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.53 E-value=1.2e-14 Score=141.62 Aligned_cols=65 Identities=22% Similarity=0.385 Sum_probs=58.5
Q ss_pred CCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 636 DLLSGGQKQRIAIARAIL----RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 636 ~~LSGGQkQRIaLARALl----r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
..||||||||++|||||. ++|++++|||||++||+.+++.+.+.|+++.++ .++|+|||+..+..
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~----~~~ivith~~~~~~ 131 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE----SQFIVITLRDVMMA 131 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT----SEEEEECSCHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC----CEEEEEEecHHHHH
Confidence 379999999999999995 668999999999999999999999999887643 79999999998754
No 126
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.50 E-value=7e-16 Score=172.12 Aligned_cols=147 Identities=16% Similarity=0.246 Sum_probs=102.8
Q ss_pred eeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC----HHH--HhcceEEEcccCccc-ccC
Q 005203 519 QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD----IKW--LRGRIGFVGQEPKLF-RMD 591 (709)
Q Consensus 519 ~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~----~~~--lR~~I~~V~Qd~~LF-~gT 591 (709)
+++||++++|++++|||+||||||||+++|+|++.|++|+|.++|.|..... +.. .|+.|++|+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 6789999999999999999999999999999999999999999988875431 122 377899999998755 667
Q ss_pred HHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--------CCCChHHHHHHHHHHHhccC-CC-EEEE
Q 005203 592 ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--------DLLSGGQKQRIAIARAILRD-PT-ILIL 661 (709)
Q Consensus 592 I~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--------~~LSGGQkQRIaLARALlr~-p~-ILIL 661 (709)
++|||.++.. .|+|..+=| .++-.--+||+.++|++... |. +|+.
T Consensus 364 V~e~l~~a~~-------------------------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 364 IFDAIQAAKA-------------------------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHH-------------------------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHh-------------------------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 8898877521 123332211 01222335889999988644 53 4444
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEec
Q 005203 662 DEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAH 698 (709)
Q Consensus 662 DEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAH 698 (709)
.+||++.|.... .+.+.+. .+.|.|++||
T Consensus 419 LDattGq~al~~---ak~f~~~-----~~itgvIlTK 447 (503)
T 2yhs_A 419 IDASTGQNAVSQ---AKLFHEA-----VGLTGITLTK 447 (503)
T ss_dssp EEGGGTHHHHHH---HHHHHHH-----TCCSEEEEEC
T ss_pred ecCcccHHHHHH---HHHHHhh-----cCCCEEEEEc
Confidence 447777554322 2222221 1489999999
No 127
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.50 E-value=1.6e-14 Score=171.30 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=98.1
Q ss_pred CcEEEEEEEEEcCCC----CCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CcceEEECCEeCCCCCHH
Q 005203 498 GRIDFVDVSFRYSSR----EMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-TNGQILIDGFPIKEVDIK 572 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~----~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-~~G~I~idG~di~~~~~~ 572 (709)
+.|++++. ++|-- .+..+++|+||+ ++|+.++|+||||||||||+|++.|+..+ +.|. .+..
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA---- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----
Confidence 34777765 33421 135799999999 99999999999999999999999997532 3331 1111
Q ss_pred HHhcceEEEcccCcccc-cCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005203 573 WLRGRIGFVGQEPKLFR-MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (709)
Q Consensus 573 ~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (709)
-+..++++.| +|. -++.||+..+ .+.+|+|++| ++.+..
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~-----------------------------------~stf~~e~~~-~~~il~ 682 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG-----------------------------------RSTFMVEMTE-TANILH 682 (800)
T ss_dssp -SEEEECCCCE---EEEEEC----------------------------------------------CHHHHHH-HHHHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh-----------------------------------hhhhhHHHHH-HHHHHH
Confidence 1245666665 332 2333333211 1235777764 444455
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 652 ILRDPTILILDEATSALDAESEHNI-KGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I-~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
...+|+++||||||+++|+.....+ .+.++.+.+. .++|+|++||.++...
T Consensus 683 ~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~--~g~~vl~~TH~~el~~ 734 (800)
T 1wb9_A 683 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK--IKALTLFATHYFELTQ 734 (800)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT--TCCEEEEECSCGGGGG
T ss_pred hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhc--cCCeEEEEeCCHHHHH
Confidence 6899999999999999988666554 5556666431 2589999999997654
No 128
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.49 E-value=1.3e-16 Score=153.34 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=74.1
Q ss_pred EEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEE
Q 005203 502 FVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFV 581 (709)
Q Consensus 502 ~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V 581 (709)
.+|++++|++ ..+++++||+|++||+++|+||||||||||+|+|+|++ |++|+|.++|.++.+. ...+ + +|
T Consensus 10 ~~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~-~--~~ 80 (158)
T 1htw_A 10 DEFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA-G--KM 80 (158)
T ss_dssp SHHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET-T--EE
T ss_pred CHHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC-C--cc
Confidence 3466777852 46999999999999999999999999999999999999 9999999999887521 1112 2 79
Q ss_pred cccCcccccCHHHHhcc
Q 005203 582 GQEPKLFRMDISSNISY 598 (709)
Q Consensus 582 ~Qd~~LF~gTI~eNI~~ 598 (709)
+|++.+|.-|+.||+.+
T Consensus 81 ~q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 81 IYHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEEECTTCSCTTHHHH
T ss_pred eeccccccCCcHHHHHH
Confidence 99999998899999954
No 129
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.47 E-value=1e-13 Score=165.43 Aligned_cols=113 Identities=22% Similarity=0.357 Sum_probs=82.8
Q ss_pred ccccCHHHHhccCCCCCCCHHH--H-----HHHHHHHhhHHHHHcCCCCcccc-cCC--CCCChHHHHHHHHHHHhccC-
Q 005203 587 LFRMDISSNISYGCTQDIKQQD--I-----EWAAKQAYAHDFIMSLPSGYETL-VDD--DLLSGGQKQRIAIARAILRD- 655 (709)
Q Consensus 587 LF~gTI~eNI~~g~~~~~~~e~--i-----~~aa~~a~l~d~I~~LP~GydT~-vGe--~~LSGGQkQRIaLARALlr~- 655 (709)
++..||.|++.|+..-..+.++ + .+..+.. +++..+ |++-. .+. .+|||||||||+||+||..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl---~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~ 540 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL---GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGSGL 540 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH---HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH---HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhhCC
Confidence 6778899999987432233321 1 1111121 233333 34322 233 48999999999999999999
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 656 -PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 656 -p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
|++|||||||++||+..-+.+.+.|+++++. |.|+|+|+||++.+. .+|
T Consensus 541 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~---G~TVIvVeHdl~~i~-~AD 590 (993)
T 2ygr_A 541 VGVLYVLDEPSIGLHQRDNRRLIETLTRLRDL---GNTLIVVEHDEDTIE-HAD 590 (993)
T ss_dssp CSCEEEEECTTTTCCHHHHHHHHHHHHHHHHT---TCEEEEECCCHHHHH-TCS
T ss_pred CCcEEEEeCcccCCCHHHHHHHHHHHHHHHHc---CCEEEEECCCHHHHH-hCC
Confidence 5999999999999999999999999998753 799999999999876 466
No 130
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.47 E-value=2.1e-16 Score=178.96 Aligned_cols=175 Identities=12% Similarity=0.090 Sum_probs=122.9
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCccccc--CH
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRM--DI 592 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~g--TI 592 (709)
+.+++++++.+++|+.++|+|||||||||+++.|+|+++|++|.|.++|.+--.++. +.+++++.|+.. ..+ |.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCH
Confidence 457899999999999999999999999999999999999999999999876322221 456888888766 433 67
Q ss_pred HHHhccC---CC-----CCCCHHHHHHHHHHHh-------------hHHHH---HcCCCCcccccCC---------CCCC
Q 005203 593 SSNISYG---CT-----QDIKQQDIEWAAKQAY-------------AHDFI---MSLPSGYETLVDD---------DLLS 639 (709)
Q Consensus 593 ~eNI~~g---~~-----~~~~~e~i~~aa~~a~-------------l~d~I---~~LP~GydT~vGe---------~~LS 639 (709)
++++... +| .+...++...+.+.++ +.+.+ ..+|+|....+.+ ..+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 7776422 11 1344555666655543 12222 3344555433221 2579
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEE--EecChhhhhhhcC
Q 005203 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLV--IAHRLISTALSFD 708 (709)
Q Consensus 640 GGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIi--IAHRlsti~~~~~ 708 (709)
||||||.++|. + | |++||+++.+.+.+.|.++.+. ++|+|+ +||.++.++..++
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~---~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPK---EDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETT---TTEEEECSCCTHHHHHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEccc---CCEEEEcccHHHHHHHHHHcC
Confidence 99999987752 1 6 9999998877776667665432 578875 8999998876543
No 131
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=1.9e-14 Score=154.62 Aligned_cols=140 Identities=15% Similarity=0.172 Sum_probs=79.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc-CCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHH
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLR-LYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQ 607 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlg-l~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e 607 (709)
..+.|+||+|+||||+++.++| ++.|+.|+|.++|.+..... .-+..+++++|++++.-... + .+ ..+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~---~~---~~~~~ 107 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPS-D---MG---NNDRI 107 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHh-h---cC---CcchH
Confidence 3499999999999999999999 89999999999998876433 33778999999987531100 0 01 11122
Q ss_pred HHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccC
Q 005203 608 DIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDT 687 (709)
Q Consensus 608 ~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~ 687 (709)
.+.+..+.+ ... .+++..+ .||| +..+|+++|+|||++ ||.++...+.+.+++..+
T Consensus 108 ~~~~~i~~~-----~~~--~~~~~~~---~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~-- 163 (354)
T 1sxj_E 108 VIQELLKEV-----AQM--EQVDFQD---SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSK-- 163 (354)
T ss_dssp HHHHHHHHH-----TTT--TC--------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT--
T ss_pred HHHHHHHHH-----HHh--ccccccc---cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC--
Confidence 233332222 111 1122111 4677 788999999999999 999999999999987643
Q ss_pred CCCcEEEEEecChhhh
Q 005203 688 MTRRTVLVIAHRLIST 703 (709)
Q Consensus 688 ~~~~TvIiIAHRlsti 703 (709)
+.++|++||+++.+
T Consensus 164 --~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 164 --NIRLIMVCDSMSPI 177 (354)
T ss_dssp --TEEEEEEESCSCSS
T ss_pred --CCEEEEEeCCHHHH
Confidence 48999999998643
No 132
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.46 E-value=8.1e-17 Score=177.90 Aligned_cols=143 Identities=18% Similarity=0.186 Sum_probs=95.9
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC----CHHHHh
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV----DIKWLR 575 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~----~~~~lR 575 (709)
++++|++|.|+. ..+|+++ + .++|+.++|+|||||||||+++.|+|+++|++|+|.++|.|+... +...++
T Consensus 144 ~~l~~Lg~~~~~---~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 144 LDLHSLGMTAHN---HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCGGGSCCCHHH---HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCHHHcCCCHHH---HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence 344555555531 3467777 4 389999999999999999999999999999999999999887421 122345
Q ss_pred cceEEEc---------ccCccc--c-----cCHHHHhccCCCC--------CCCHHHHHHHHHHHhhHHHHHcCCCCccc
Q 005203 576 GRIGFVG---------QEPKLF--R-----MDISSNISYGCTQ--------DIKQQDIEWAAKQAYAHDFIMSLPSGYET 631 (709)
Q Consensus 576 ~~I~~V~---------Qd~~LF--~-----gTI~eNI~~g~~~--------~~~~e~i~~aa~~a~l~d~I~~LP~GydT 631 (709)
+.+++++ |+|.++ . .|+.+|+.++... ..+..+..+.+...++.++.
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--------- 289 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--------- 289 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH---------
T ss_pred cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH---------
Confidence 5566655 888763 2 3778887653110 11122333333333332221
Q ss_pred ccCCCCCChHHHHHHHHHHHhccCCCEEE
Q 005203 632 LVDDDLLSGGQKQRIAIARAILRDPTILI 660 (709)
Q Consensus 632 ~vGe~~LSGGQkQRIaLARALlr~p~ILI 660 (709)
-...|||||+|| |||||+.+|++..
T Consensus 290 --~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 --ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp --HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred --HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 113699999999 9999999999875
No 133
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.46 E-value=4.5e-14 Score=143.15 Aligned_cols=138 Identities=16% Similarity=0.234 Sum_probs=87.6
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhc--CCCC-----CcceEEECCEeCC-CCCHHHHhcceEEEcccCcccccCHHHH
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLR--LYEP-----TNGQILIDGFPIK-EVDIKWLRGRIGFVGQEPKLFRMDISSN 595 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlg--l~~p-----~~G~I~idG~di~-~~~~~~lR~~I~~V~Qd~~LF~gTI~eN 595 (709)
-|++|+.++|+||||||||||++.+++ ..+| .+|.+++++.+.- .-....+++.+++.+|+ +.||
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 5665 6789999987631 11233455667777765 5678
Q ss_pred hccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH----
Q 005203 596 ISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAE---- 671 (709)
Q Consensus 596 I~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~---- 671 (709)
+.+..+ .+.++..+.++. +.+.+.. .+|+++++||+|+.+|.+
T Consensus 93 ~~~~~~--~~~~~~~~~~~~--~~~~~~~-----------------------------~~~~lliiD~~~~~~~~~~~~~ 139 (243)
T 1n0w_A 93 VAYARA--FNTDHQTQLLYQ--ASAMMVE-----------------------------SRYALLIVDSATALYRTDYSGR 139 (243)
T ss_dssp EEEEEC--CSHHHHHHHHHH--HHHHHHH-----------------------------SCEEEEEEETSSGGGC------
T ss_pred eEEEec--CCHHHHHHHHHH--HHHHHhc-----------------------------CCceEEEEeCchHHHHHHhcCC
Confidence 777532 333443332211 1122211 589999999999999986
Q ss_pred ---HHH-----HHHHHHHHhhccCCCCcEEEEEecChhhh
Q 005203 672 ---SEH-----NIKGVLRAVRSDTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 672 ---tE~-----~I~~~L~~l~~~~~~~~TvIiIAHRlsti 703 (709)
+++ .+.+.|.++.++ .++|+|+++|-....
T Consensus 140 ~~~~~r~~~~~~~~~~l~~~~~~--~~~tvi~~~h~~~~~ 177 (243)
T 1n0w_A 140 GELSARQMHLARFLRMLLRLADE--FGVAVVITNQVVAQV 177 (243)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH--HCCEEEEEC------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH--cCCEEEEEeeeeecC
Confidence 432 334444443322 258999999966543
No 134
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.43 E-value=1.9e-15 Score=155.05 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=95.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh---cCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccc-cCHHHHhccCC--
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLL---RLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR-MDISSNISYGC-- 600 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLl---gl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~-gTI~eNI~~g~-- 600 (709)
+++.++|+||||||||||+++|+ |+..|+.|+|.++|.+.. ..+...++.++|++.++. .++.+|+...-
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999887642 234556677788777654 47888885310
Q ss_pred --------CC-CCCHHHHHHHHHHHhhHHHHHcCCCCccc-------------cc-CC--CCCChHHHHHHHHHHHh-cc
Q 005203 601 --------TQ-DIKQQDIEWAAKQAYAHDFIMSLPSGYET-------------LV-DD--DLLSGGQKQRIAIARAI-LR 654 (709)
Q Consensus 601 --------~~-~~~~e~i~~aa~~a~l~d~I~~LP~GydT-------------~v-Ge--~~LSGGQkQRIaLARAL-lr 654 (709)
.. ..+.++... +..+. +.+. .+ .. ..||| |+ ||+ +.
T Consensus 102 ~~~~~~il~g~~~~~~~~~~----------l~~~~-~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~ 163 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEA----------LDKIC-EVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN 163 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHH----------HHTTC-CCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS
T ss_pred cCCCeEEEECCCCCHHHHHH----------HHhhc-CCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC
Confidence 00 112222111 11111 1110 11 11 26899 66 899 99
Q ss_pred CCCEEEEe----CCCCCCCHHHHHHHHHHHHHhh
Q 005203 655 DPTILILD----EATSALDAESEHNIKGVLRAVR 684 (709)
Q Consensus 655 ~p~ILILD----EaTSaLD~~tE~~I~~~L~~l~ 684 (709)
+|++++|| |||++||.+++..+.+.++.+.
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 99999999 9999999999999888886653
No 135
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.42 E-value=1.1e-14 Score=157.17 Aligned_cols=120 Identities=21% Similarity=0.176 Sum_probs=79.8
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCcceEEEC-CEeCCCCCHHHHhcceEEEcccCccccc-CH
Q 005203 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-PTNGQILID-GFPIKEVDIKWLRGRIGFVGQEPKLFRM-DI 592 (709)
Q Consensus 516 ~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-p~~G~I~id-G~di~~~~~~~lR~~I~~V~Qd~~LF~g-TI 592 (709)
.-++++++. .+|++++|+||||+|||||+|+|+|+.. |..|+|.++ |.+.. ...+..+++++|++.++.. |+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 457888874 5899999999999999999999999999 999999997 77653 2356789999999988854 78
Q ss_pred HHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHh
Q 005203 593 SSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAI 652 (709)
Q Consensus 593 ~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARAL 652 (709)
+|+-. . +.+.+++.+. +.++...+ |+.-..+. .+|| ||+||++||+++
T Consensus 279 ~e~~l---~-~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 279 REFGL---W-HLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HTCCC---C-CCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred HHhhh---c-CCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 88632 2 3445554322 22333332 33222222 3799 999999999986
No 136
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.40 E-value=1.8e-13 Score=146.64 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=97.8
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHH----HHhcc--eEEEcccCccc-ccCHHHHh
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIK----WLRGR--IGFVGQEPKLF-RMDISSNI 596 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~----~lR~~--I~~V~Qd~~LF-~gTI~eNI 596 (709)
..++|++++|||||||||||+++.|+|+++|++|+|.++|.|+...+.. .|+++ +.+++|+..++ ..|++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999998776533 34444 45999998877 45778888
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCccccc----CC-CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 005203 597 SYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLV----DD-DLLSGGQKQRIAIARAILRDPTILILDEATSALDAE 671 (709)
Q Consensus 597 ~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~v----Ge-~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~ 671 (709)
.++.. .++|..+ |- ..-..=..+--.++|++..++++++||..|. .|..
T Consensus 205 ~~~~~-------------------------~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~ 258 (328)
T 3e70_C 205 QHAKA-------------------------RGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIV 258 (328)
T ss_dssp HHHHH-------------------------HTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHH
T ss_pred HHHHh-------------------------ccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHH
Confidence 65410 0122211 11 0001112233348999999999999996665 3332
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 672 SEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 672 tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
+.++.+.+. .+.|.|++||--.
T Consensus 259 ------~~~~~~~~~--~~it~iilTKlD~ 280 (328)
T 3e70_C 259 ------EQARQFNEA--VKIDGIILTKLDA 280 (328)
T ss_dssp ------HHHHHHHHH--SCCCEEEEECGGG
T ss_pred ------HHHHHHHHh--cCCCEEEEeCcCC
Confidence 222332211 1589999999544
No 137
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.38 E-value=3.5e-13 Score=128.07 Aligned_cols=92 Identities=21% Similarity=0.301 Sum_probs=71.3
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--eEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHH
Q 005203 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG--QILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (709)
Q Consensus 517 vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G--~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (709)
+++++ +|+.++|+||+|||||||+++++|.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 46666 9999999999999999999999999987 57 666666543221
Q ss_pred HhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 005203 595 NISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEH 674 (709)
Q Consensus 595 NI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~ 674 (709)
+++.+|++|+|||+++ +|...+.
T Consensus 79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 3467899999999998 6665588
Q ss_pred HHHHHHHHhhccCCCCcE-EEEEecC
Q 005203 675 NIKGVLRAVRSDTMTRRT-VLVIAHR 699 (709)
Q Consensus 675 ~I~~~L~~l~~~~~~~~T-vIiIAHR 699 (709)
.+.+.++++.+. ++| +|+.+|+
T Consensus 102 ~l~~li~~~~~~---g~~~iiits~~ 124 (149)
T 2kjq_A 102 LLFSIFNRFRNS---GKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHH---TCCEEEEEESS
T ss_pred HHHHHHHHHHHc---CCcEEEEECCC
Confidence 888888776543 477 7777775
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.33 E-value=6.2e-13 Score=146.10 Aligned_cols=135 Identities=16% Similarity=0.213 Sum_probs=89.2
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHH--HhcCCCCCcc-----eEEECCEeC-CCCCHHHHhcceEEEcccCcccccCHHHH
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNL--LLRLYEPTNG-----QILIDGFPI-KEVDIKWLRGRIGFVGQEPKLFRMDISSN 595 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkL--Llgl~~p~~G-----~I~idG~di-~~~~~~~lR~~I~~V~Qd~~LF~gTI~eN 595 (709)
-|++|+.++|+||||||||||++. +.++.+|+.| .|++|+.+. .......+++.+++.+| ++.||
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 699999999999999999999994 4577766444 899998763 22223345566777666 67888
Q ss_pred hccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHHHH
Q 005203 596 ISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL--RDPTILILDEATSALDAESE 673 (709)
Q Consensus 596 I~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl--r~p~ILILDEaTSaLD~~tE 673 (709)
+.+..+ .+.++..+..+. +++++ .+|+++++||+|+.+|.+..
T Consensus 247 i~~~~~--~~~~~~~~~l~~---------------------------------~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYARA--YNADHQLRLLDA---------------------------------AAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEEC--CSHHHHHHHHHH---------------------------------HHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEecc--CChHHHHHHHHH---------------------------------HHHHHHhcCCceEEecchhhhCchhhc
Confidence 888743 233333222211 11111 46999999999999997644
Q ss_pred ------------HHHHHHHHHhhccCCCCcEEEEEecChhh
Q 005203 674 ------------HNIKGVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 674 ------------~~I~~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
..+.+.|+++.++ .++|+|+|+|-.++
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake--~gitVIlv~Hv~~~ 330 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQ--FGVAVVVTNQVVAQ 330 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHH--HCCEEEEEEEC---
T ss_pred CccchHHHHHHHHHHHHHHHHHHHH--cCCEEEEEEeeccc
Confidence 5566777766533 26899999998443
No 139
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.31 E-value=4.8e-15 Score=155.07 Aligned_cols=142 Identities=15% Similarity=0.150 Sum_probs=104.0
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccC-ccc-ccCH
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEP-KLF-RMDI 592 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~-~LF-~gTI 592 (709)
+.+++++++++++| ++|+||+|||||||++.|+|.+.+ |.|.++|.++........++.+++++|+. ..+ .-++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 46899999999999 999999999999999999999987 79999999987666667788899999986 333 3456
Q ss_pred HHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCC----
Q 005203 593 SSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATS---- 666 (709)
Q Consensus 593 ~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTS---- 666 (709)
.|||-.... .-+.++.. . ....+.. ..|||||+||..+++|+..+|++| |||+.
T Consensus 109 ~Deid~~~~-~r~~~~~~-------------~----~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gR 168 (274)
T 2x8a_A 109 FDEVDALCP-RRSDRETG-------------A----SVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGR 168 (274)
T ss_dssp EETCTTTCC---------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTS
T ss_pred eehhhhhhc-ccCCCcch-------------H----HHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCccc
Confidence 788765432 11111100 0 0001111 258999999999999999999975 99974
Q ss_pred --------CCCHHHHHHHHHHH
Q 005203 667 --------ALDAESEHNIKGVL 680 (709)
Q Consensus 667 --------aLD~~tE~~I~~~L 680 (709)
.-|.+....|.+.+
T Consensus 169 fd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 169 LDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp SCEEEECCSCCHHHHHHHHHHH
T ss_pred CCeEEEeCCcCHHHHHHHHHHH
Confidence 33667777776655
No 140
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.31 E-value=1.4e-13 Score=145.84 Aligned_cols=116 Identities=17% Similarity=0.159 Sum_probs=80.6
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE---CCEeCCCCCHHHHh-cceEEEcccCccc------ccCH
Q 005203 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI---DGFPIKEVDIKWLR-GRIGFVGQEPKLF------RMDI 592 (709)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~i---dG~di~~~~~~~lR-~~I~~V~Qd~~LF------~gTI 592 (709)
+++.+|++++|+||||||||||+|.|+ +.+|++|+|.+ +|.++.... ..++ +.+|+|+|+|-+. .-|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~-~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV-RLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE-EEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE-EEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 456789999999999999999999999 99999999999 999887643 2233 3799999999653 4578
Q ss_pred HHHh--ccC---------C---CCCCCHHHHHHHHHHHhhHH-HHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 593 SSNI--SYG---------C---TQDIKQQDIEWAAKQAYAHD-FIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 593 ~eNI--~~g---------~---~~~~~~e~i~~aa~~a~l~d-~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
||+ .|. . +.+...+.+.++++..++.+ ...+.| ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~---------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL---------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH---------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH---------HHHHHHHHHHHHHhc
Confidence 898 443 1 11223466778887777754 333222 248998888899987
No 141
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.30 E-value=8.1e-13 Score=128.53 Aligned_cols=111 Identities=16% Similarity=0.243 Sum_probs=76.1
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcce-EEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCC
Q 005203 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQ-ILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGC 600 (709)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~-I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~ 600 (709)
|+++++|+.++|+||+|+|||||++.+++.+.|++|. +.+ +
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~-------------------~------------------- 73 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-------------------F------------------- 73 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE-------------------E-------------------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE-------------------E-------------------
Confidence 4678899999999999999999999999999877763 211 0
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHH
Q 005203 601 TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATS-ALDAESEHNIKGV 679 (709)
Q Consensus 601 ~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTS-aLD~~tE~~I~~~ 679 (709)
+-+++.+-.+.+ .. .|+.+ -+...+.+|++|||||+++ ++|+.....+.+.
T Consensus 74 ----~~~~~~~~~~~~-----~~----------------~~~~~---~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 74 ----DTKDLIFRLKHL-----MD----------------EGKDT---KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp ----EHHHHHHHHHHH-----HH----------------HTCCS---HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred ----EHHHHHHHHHHH-----hc----------------CchHH---HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 011111111110 00 00000 1122345999999999996 8999999999888
Q ss_pred HHHhhccCCCCcEEEEEecChh
Q 005203 680 LRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 680 L~~l~~~~~~~~TvIiIAHRls 701 (709)
++...++ ++|+|++||.+.
T Consensus 126 l~~~~~~---~~~ii~tsn~~~ 144 (180)
T 3ec2_A 126 ITYRYNN---LKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHT---TCEEEEECCCCS
T ss_pred HHHHHHc---CCCEEEEcCCCh
Confidence 8776532 589999999874
No 142
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.23 E-value=1.1e-13 Score=139.41 Aligned_cols=127 Identities=20% Similarity=0.209 Sum_probs=102.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC---CCCcceEEE--------CCEeCCC-CCHHHHhcceEEEcccC------ccc
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLY---EPTNGQILI--------DGFPIKE-VDIKWLRGRIGFVGQEP------KLF 588 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~---~p~~G~I~i--------dG~di~~-~~~~~lR~~I~~V~Qd~------~LF 588 (709)
.+.+++|+|+|||||||++++|.+.| .++.|+|.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 788999988 7888753 45678999999999986 556
Q ss_pred ccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC---CCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 005203 589 RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD---DLLSGGQKQRIAIARAILRDPTILILDEAT 665 (709)
Q Consensus 589 ~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe---~~LSGGQkQRIaLARALlr~p~ILILDEaT 665 (709)
..++.+|+. ++++.+++..++.|+.+...+.++++.+.. --++|+ .++++++++++++|+++++
T Consensus 84 ~~~v~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 84 GEDVSGEIR--------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp TEECHHHHT--------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred CeeCchhhC--------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 667777653 478889999999999998877777665532 257776 5677888999999999987
Q ss_pred C
Q 005203 666 S 666 (709)
Q Consensus 666 S 666 (709)
.
T Consensus 151 ~ 151 (227)
T 1cke_A 151 S 151 (227)
T ss_dssp H
T ss_pred H
Confidence 4
No 143
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.22 E-value=1.4e-12 Score=143.85 Aligned_cols=153 Identities=18% Similarity=0.220 Sum_probs=95.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhc
Q 005203 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNIS 597 (709)
Q Consensus 518 L~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~ 597 (709)
-++++|++++|+.++|||++|||||||++.|+|..+ .+.+.+...+ ...+++|.|++ -..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~-~~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSE-EERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSS-SCEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecC-cceEEEEeccc
Confidence 479999999999999999999999999999999853 3555555443 34578888875 11223444433
Q ss_pred cCCC----CCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC--CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 005203 598 YGCT----QDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD--DLLSGGQKQRIAIARAILRDPTILILDEATSALDAE 671 (709)
Q Consensus 598 ~g~~----~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe--~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~ 671 (709)
+... .....+...+ .+ .++..+.- +|.. .+ .+||+||+||.++||||..+|.|+++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl~~-~e--ra~~lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRH-IA--RTRVLLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHH-HT--SSSEEEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHH-HH--HHHhhhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 3210 0111111110 00 00111110 1111 12 36999999999999999999999999 899987
Q ss_pred HHHHHHHHHH-HhhccCCCCcEEEEEec
Q 005203 672 SEHNIKGVLR-AVRSDTMTRRTVLVIAH 698 (709)
Q Consensus 672 tE~~I~~~L~-~l~~~~~~~~TvIiIAH 698 (709)
.+ ...+.+. .+.+ .+.+++.||.
T Consensus 283 ~~-~~~~~l~~~l~~---~g~~vi~iSA 306 (416)
T 1udx_A 283 EE-EAVKALADALAR---EGLAVLPVSA 306 (416)
T ss_dssp CH-HHHHHHHHHHHT---TTSCEEECCT
T ss_pred hH-HHHHHHHHHHHh---cCCeEEEEEC
Confidence 76 3334443 3332 2467777653
No 144
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.22 E-value=7.3e-14 Score=141.68 Aligned_cols=166 Identities=16% Similarity=0.195 Sum_probs=75.3
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh-cCC------------CCCcceEEECCEeCCCCCHHHHhcceEEE
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL-RLY------------EPTNGQILIDGFPIKEVDIKWLRGRIGFV 581 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLl-gl~------------~p~~G~I~idG~di~~~~~~~lR~~I~~V 581 (709)
....+++||++++|+.++|+||||||||||+++|+ |++ +|..|++ +|.++...+...+... .
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~ 88 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---C 88 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---H
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---h
Confidence 34678999999999999999999999999999999 999 6666665 5655444444444432 2
Q ss_pred cccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCCh--HHHHHH-HHHH-HhccCCC
Q 005203 582 GQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSG--GQKQRI-AIAR-AILRDPT 657 (709)
Q Consensus 582 ~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSG--GQkQRI-aLAR-ALlr~p~ 657 (709)
.++..++.+++.+|+ ++.+ . +++.++++. |....+. ..+.| .-+++. .-++ .++..|+
T Consensus 89 ~~~~~~~~~~~~~~~-~~~~-~---~~i~~~~~~------------~~~vild-~~~~g~~~~~~~~~~~~~~v~v~~~~ 150 (231)
T 3lnc_A 89 SNGEIIEHAEVFGNF-YGVP-R---KNLEDNVDK------------GVSTLLV-IDWQGAFKFMEMMREHVVSIFIMPPS 150 (231)
T ss_dssp HTTCEEEEEEETTEE-EEEE-C---TTHHHHHHH------------TCEEEEE-CCHHHHHHHHHHSGGGEEEEEEECSC
T ss_pred hcCceehhhhhcccc-CCCC-H---HHHHHHHHc------------CCeEEEE-cCHHHHHHHHHhcCCCeEEEEEECCc
Confidence 344444445555554 3422 2 233333322 1111111 00111 123433 2222 3356777
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhcc--CCCCcEEEEEecChhhh
Q 005203 658 ILILDEATSALDAESEHNIKGVLRAVRSD--TMTRRTVLVIAHRLIST 703 (709)
Q Consensus 658 ILILDEaTSaLD~~tE~~I~~~L~~l~~~--~~~~~TvIiIAHRlsti 703 (709)
..++||.+++.|..++..+.+.|++...+ .....+.|++.|.++.+
T Consensus 151 ~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~ 198 (231)
T 3lnc_A 151 MEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEET 198 (231)
T ss_dssp HHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHH
Confidence 88889999999998888887777543211 11135788888877654
No 145
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.21 E-value=9.1e-14 Score=136.25 Aligned_cols=146 Identities=16% Similarity=0.066 Sum_probs=95.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCccc-ccCHHHHhccCCCCCCCH
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLF-RMDISSNISYGCTQDIKQ 606 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~~~ 606 (709)
|+.++|+|||||||||+++.|++ |.+|+|.+||.++... ..+++++|++..+ ..++.+|+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 78999999999999999999997 6789999998665331 2356777765322 33455554321
Q ss_pred HHHHHHHHHHhhHHHHHc-CCCCcccccCC------CCC--ChHHHHHHHHHH------HhccCCCEEEEeCCCCCCCHH
Q 005203 607 QDIEWAAKQAYAHDFIMS-LPSGYETLVDD------DLL--SGGQKQRIAIAR------AILRDPTILILDEATSALDAE 671 (709)
Q Consensus 607 e~i~~aa~~a~l~d~I~~-LP~GydT~vGe------~~L--SGGQkQRIaLAR------ALlr~p~ILILDEaTSaLD~~ 671 (709)
++. +... -+.=+|...+. ..+ |+||+|++.++. +++++|+...+|| .+|++
T Consensus 66 ------~~~-----~~~~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~ 131 (189)
T 2bdt_A 66 ------TVN-----FLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGER 131 (189)
T ss_dssp ------HHH-----HHHTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGG
T ss_pred ------HHH-----HHhcCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHH
Confidence 111 1110 00001222121 134 899999988888 8999998888884 79998
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEecC-hhhhhhhc
Q 005203 672 SEHNIKGVLRAVRSDTMTRRTVLVIAHR-LISTALSF 707 (709)
Q Consensus 672 tE~~I~~~L~~l~~~~~~~~TvIiIAHR-lsti~~~~ 707 (709)
..+. .+.++.+... +.|+|..+|. ++++...+
T Consensus 132 ~~~~-~~~~~~~~~~---~~~ii~tsh~~~~~~e~~~ 164 (189)
T 2bdt_A 132 CLEL-VEEFESKGID---ERYFYNTSHLQPTNLNDIV 164 (189)
T ss_dssp GGHH-HHHHHHTTCC---TTSEEECSSSCGGGHHHHH
T ss_pred HHHH-HHHHhhcCCC---ccEEEeCCCCChhhHHHHH
Confidence 7777 7777776432 5799999999 87776544
No 146
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.19 E-value=1.9e-11 Score=133.04 Aligned_cols=67 Identities=31% Similarity=0.448 Sum_probs=58.7
Q ss_pred CCChHHHHHH------HHHHHhccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhhhhcC
Q 005203 637 LLSGGQKQRI------AIARAILRD-PTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTALSFD 708 (709)
Q Consensus 637 ~LSGGQkQRI------aLARALlr~-p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~~~~~ 708 (709)
.|||||+||+ ++|||+..+ |++||||||||+||+++...+.+.|+++.+ +.|+|+|||+++ +...+|
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~----~~~vi~~th~~~-~~~~~d 353 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS----IPQMIIITHHRE-LEDVAD 353 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS----CSEEEEEESCGG-GGGGCS
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc----CCeEEEEEChHH-HHhhCC
Confidence 6999999988 678999999 999999999999999999999999988743 369999999997 455455
No 147
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.18 E-value=3.9e-12 Score=134.71 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=70.1
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE---CCEeCCCCCHHHHhcceEEEcccCcc------------
Q 005203 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI---DGFPIKEVDIKWLRGRIGFVGQEPKL------------ 587 (709)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~i---dG~di~~~~~~~lR~~I~~V~Qd~~L------------ 587 (709)
|++.+|+.++|+||||||||||+++|+|+..|++|+|.+ +|.++.........+.+|+|+|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 567889999999999999999999999999999999999 99998765422112469999999853
Q ss_pred ----c-ccCHHHHhccCCC--CCCCHHHHHHHHHHHhh-HHHHHcCC
Q 005203 588 ----F-RMDISSNISYGCT--QDIKQQDIEWAAKQAYA-HDFIMSLP 626 (709)
Q Consensus 588 ----F-~gTI~eNI~~g~~--~~~~~e~i~~aa~~a~l-~d~I~~LP 626 (709)
| .-|+ ||+.|..- .....+++.++++..++ .+...+.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 4 4467 99988531 12235678999999998 45555544
No 148
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.18 E-value=3.2e-13 Score=143.44 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=95.1
Q ss_pred CCcEEEEEEEEEcCCCCCCccceeeeEEe-------------------cCCcEEEEEcCCCCcHHHHHHHHhcCCC--CC
Q 005203 497 MGRIDFVDVSFRYSSREMVPVLQHVNISV-------------------NPGEVVAIAGLSGSGKSTLVNLLLRLYE--PT 555 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I-------------------~~Ge~vAIVG~SGsGKSTLlkLLlgl~~--p~ 555 (709)
.+.|+++||++.|. ++++++|+.+ ++|+++||+||||||||||+++|.|++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 45699999999993 5899999998 9999999999999999999999999999 99
Q ss_pred cceEEE---CCEeCCCCCHHHHhcceEEEcccCccc-ccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcc-
Q 005203 556 NGQILI---DGFPIKEVDIKWLRGRIGFVGQEPKLF-RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYE- 630 (709)
Q Consensus 556 ~G~I~i---dG~di~~~~~~~lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~Gyd- 630 (709)
+|+|.+ ||.+.. ...++.+++| |+..++ .-|+.+|+.+.. .+..|-+
T Consensus 110 ~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~-----------------------~l~~~~~~ 161 (308)
T 1sq5_A 110 HRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVS-----------------------DLKSGVPN 161 (308)
T ss_dssp CCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHH-----------------------HHTTTCSC
T ss_pred CCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHH-----------------------HHhCCCCc
Confidence 999999 998752 2456778888 765442 335555554321 0011111
Q ss_pred cccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 005203 631 TLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALD 669 (709)
Q Consensus 631 T~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD 669 (709)
...-.-+.+.+ +|+..+.+...+|+++|+|.+..-.|
T Consensus 162 i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 162 VTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp EEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred eeccccccccc--CcccccceecCCCCEEEECchhhCCC
Confidence 00000011222 33333345567889999999987766
No 149
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.15 E-value=2.4e-11 Score=128.27 Aligned_cols=142 Identities=16% Similarity=0.173 Sum_probs=99.3
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
+.++++++.|++. . ++++++ +|++++++|++|+||||++..|++++.+..|+|.+.|.|...-...+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------ 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------ 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH------
Confidence 5677888888632 2 778888 99999999999999999999999999999999999998875411110
Q ss_pred EEcccCcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEE
Q 005203 580 FVGQEPKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTIL 659 (709)
Q Consensus 580 ~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~IL 659 (709)
| +...++.. |++-.-+...-.-.+-||.+|+++..++++++
T Consensus 144 ---q-------------------------l~~~~~~~-----------~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~v 184 (295)
T 1ls1_A 144 ---Q-------------------------LRLLGEKV-----------GVPVLEVMDGESPESIRRRVEEKARLEARDLI 184 (295)
T ss_dssp ---H-------------------------HHHHHHHH-----------TCCEEECCTTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred ---H-------------------------HHHhcccC-----------CeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 0 00011111 11111111112334567999999988999999
Q ss_pred EEeCC-CCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEe
Q 005203 660 ILDEA-TSALDAESEHNIKGVLRAVRSDTMTRRTVLVIA 697 (709)
Q Consensus 660 ILDEa-TSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIA 697 (709)
|+||| ++++|...-..+.+..+.... +.+++++.
T Consensus 185 iiDtpp~~~~d~~~~~~l~~~~~~~~~----~~~~lv~~ 219 (295)
T 1ls1_A 185 LVDTAGRLQIDEPLMGELARLKEVLGP----DEVLLVLD 219 (295)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHCC----SEEEEEEE
T ss_pred EEeCCCCccccHHHHHHHHHHhhhcCC----CEEEEEEe
Confidence 99999 999998877777776665543 35555553
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.14 E-value=2.3e-11 Score=129.01 Aligned_cols=98 Identities=17% Similarity=0.330 Sum_probs=74.3
Q ss_pred eeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCC
Q 005203 521 VNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGC 600 (709)
Q Consensus 521 lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~ 600 (709)
++++.++|++++|+|++||||||+++.|++++.+++|+|.+.+.|... ...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r--~~a--------------------------- 147 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR--AAA--------------------------- 147 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC--HHH---------------------------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc--HHH---------------------------
Confidence 355678999999999999999999999999999999999998877532 100
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHH---HHHHHhccCCCEEEEeCCCC
Q 005203 601 TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRI---AIARAILRDPTILILDEATS 666 (709)
Q Consensus 601 ~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRI---aLARALlr~p~ILILDEaTS 666 (709)
.+++...++..+ +| . + ...|||+.|++ +++||+.++|+++|+|||..
T Consensus 148 -----~eqL~~~~~~~g-------l~----~-~--~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 -----IEQLKIWGERVG-------AT----V-I--SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----HHHHHHHHHHHT-------CE----E-E--CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----HHHHHHHHHHcC-------Cc----E-E--ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 122222333222 11 1 1 24589999999 99999999999999999984
No 151
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.12 E-value=3.2e-12 Score=131.74 Aligned_cols=99 Identities=23% Similarity=0.194 Sum_probs=76.3
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh---cCCCCCcceEE--------ECCEeC-CCCCHHHHhcceEEEcc
Q 005203 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL---RLYEPTNGQIL--------IDGFPI-KEVDIKWLRGRIGFVGQ 583 (709)
Q Consensus 516 ~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLl---gl~~p~~G~I~--------idG~di-~~~~~~~lR~~I~~V~Q 583 (709)
+++++.+ ++|++++|+|||||||||++++|+ |++.|++|.|+ .+|.++ .......+++.+++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3455443 899999999999999999999999 99999999999 999998 45678899999999996
Q ss_pred c------CcccccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcC
Q 005203 584 E------PKLFRMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSL 625 (709)
Q Consensus 584 d------~~LF~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~L 625 (709)
+ ..++..++.+||. .+++.+++..+..++.+.+.
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~--------~~~v~~~~s~~~~~~~vr~~ 134 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR--------TETVGNTASQAAAFPRVREA 134 (252)
T ss_dssp EETTEEEEEETTEECTTGGG--------SHHHHHHHHHHTTSHHHHHH
T ss_pred cCCCCceEEECCeehhHHHH--------HHHHHHHHHHhcccHHHHHH
Confidence 4 5677788888764 24566666666666665443
No 152
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.12 E-value=2.1e-11 Score=136.41 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=56.1
Q ss_pred EEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC
Q 005203 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD 570 (709)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~ 570 (709)
.+.+++..+ ..+|+|+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 456666543 2479999999999 999999999999999999999999999999999999987544
No 153
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.08 E-value=6.4e-12 Score=133.19 Aligned_cols=96 Identities=18% Similarity=0.238 Sum_probs=57.6
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE---CCEeCCCCCHHHHhcceEEEcccCcccc-----cCHHH
Q 005203 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI---DGFPIKEVDIKWLRGRIGFVGQEPKLFR-----MDISS 594 (709)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~i---dG~di~~~~~~~lR~~I~~V~Qd~~LF~-----gTI~e 594 (709)
+++.+|++++|+||||+|||||+|.|+|+..|..|+|.+ +|.+..... ..++..+|+|+|+|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567899999999999999999999999999999999999 898876532 222333899999998765 577 9
Q ss_pred Hhc--cC-------------C-CCCCCHHHHHHHHHHHhhHH
Q 005203 595 NIS--YG-------------C-TQDIKQQDIEWAAKQAYAHD 620 (709)
Q Consensus 595 NI~--~g-------------~-~~~~~~e~i~~aa~~a~l~d 620 (709)
|+. |. + ..+...+.+.++++..++.+
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 993 21 0 11223456777777777654
No 154
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.06 E-value=1.9e-11 Score=119.87 Aligned_cols=142 Identities=21% Similarity=0.096 Sum_probs=82.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-----------CcceEEECCEeCCC--CCHHHHhcceEEEcccCcccccCHHHHh
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYEP-----------TNGQILIDGFPIKE--VDIKWLRGRIGFVGQEPKLFRMDISSNI 596 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~p-----------~~G~I~idG~di~~--~~~~~lR~~I~~V~Qd~~LF~gTI~eNI 596 (709)
+++|+|++|||||||++.++|...| .+|+|.+||.++.- ++....++..++++|...-..+ .|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~----~i 106 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG----AL 106 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE----EE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE----EE
Confidence 7899999999999999999998765 57999999987531 2222223333344332111000 11
Q ss_pred ccCCCCCCCHHHHHHHHHHHhhHHHHHc-CCCCcc-cccCC-CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 005203 597 SYGCTQDIKQQDIEWAAKQAYAHDFIMS-LPSGYE-TLVDD-DLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673 (709)
Q Consensus 597 ~~g~~~~~~~e~i~~aa~~a~l~d~I~~-LP~Gyd-T~vGe-~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE 673 (709)
...+ ..+.+...++.+. .+.+.. -+.+.- -.++. ..|..-..+...+||++.++|+++++| ||++|.++.
T Consensus 107 ~v~d--~~~~~s~~~~~~~---~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v 179 (191)
T 1oix_A 107 LVYD--IAKHLTYENVERW---LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNV 179 (191)
T ss_dssp EEEE--TTCHHHHHTHHHH---HHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTH
T ss_pred EEEE--CcCHHHHHHHHHH---HHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCH
Confidence 2221 1112211111110 111111 111110 12233 245443445678999999999999999 999999999
Q ss_pred HHHHHHHHH
Q 005203 674 HNIKGVLRA 682 (709)
Q Consensus 674 ~~I~~~L~~ 682 (709)
..+.+.|.+
T Consensus 180 ~~l~~~l~~ 188 (191)
T 1oix_A 180 EAAFQTILT 188 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888754
No 155
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.02 E-value=3.2e-13 Score=140.88 Aligned_cols=138 Identities=17% Similarity=0.181 Sum_probs=98.9
Q ss_pred EEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEE
Q 005203 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (709)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~ 580 (709)
+++++...|.. +.+++++++++++| ++|+||||||||||++.|++... .|.|.++|.++.+......++.+++
T Consensus 51 ~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 45677777752 56899999999999 99999999999999999999886 7999999988755544556677888
Q ss_pred EcccCc-cc-ccCHHHHh-ccCCCCCC----CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 581 VGQEPK-LF-RMDISSNI-SYGCTQDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 581 V~Qd~~-LF-~gTI~eNI-~~g~~~~~----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
++|+.. .+ .-++.||| .++..... ..++..+.+ .+.+. .|||||+||..+|+|+.
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll~-------------~lsgg~~~~~~i~~a~t 185 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV-------------EMDGFEKDTAIVVMAAT 185 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHHH-------------HHTTCCTTCCEEEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHHH-------------HHhCCCCCCCEEEEEec
Confidence 888864 33 34567887 34321110 112222111 12222 27899999999999999
Q ss_pred cCCCEEEEeCCC
Q 005203 654 RDPTILILDEAT 665 (709)
Q Consensus 654 r~p~ILILDEaT 665 (709)
.+|++ |||+.
T Consensus 186 ~~p~~--ld~~l 195 (278)
T 1iy2_A 186 NRPDI--LDPAL 195 (278)
T ss_dssp SCTTS--SCHHH
T ss_pred CCchh--CCHhH
Confidence 99987 68764
No 156
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.02 E-value=9.8e-14 Score=149.01 Aligned_cols=155 Identities=19% Similarity=0.266 Sum_probs=101.1
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCC-------cEEEEEcCCCCcHHHHHHHHhcCC----CCCcceEEECCEeCCC
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPG-------EVVAIAGLSGSGKSTLVNLLLRLY----EPTNGQILIDGFPIKE 568 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~G-------e~vAIVG~SGsGKSTLlkLLlgl~----~p~~G~I~idG~di~~ 568 (709)
++.++++..|+. ..+++++++.|++| +.++|+||+|+|||||+++++|.+ .|.+|.+..+|.|+..
T Consensus 19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 444566666652 46899999999987 899999999999999999999998 7888888877766543
Q ss_pred CCHHHHhcceEEEcccCcccccCHHHHhccCCC-CCCC----HHHHHHHHHHHhhHHHHHcCCCCcccccCC----CCCC
Q 005203 569 VDIKWLRGRIGFVGQEPKLFRMDISSNISYGCT-QDIK----QQDIEWAAKQAYAHDFIMSLPSGYETLVDD----DLLS 639 (709)
Q Consensus 569 ~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~-~~~~----~e~i~~aa~~a~l~d~I~~LP~GydT~vGe----~~LS 639 (709)
+-....+..|.++.|.+.++. ++.|++..... ...+ .+. ..+. +.+ .+|. =+.+|. ..||
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~---~~~~--i~~---~l~~--~~li~at~~~~~Ls 164 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGP---SAKS--IRI---DIQP--FTLVGATTRSGLLS 164 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC-----------------------CC--CEEEEEESCGGGSC
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCc---cccc--ccc---cCCC--eEEEEecCCcccCC
Confidence 211112567999999988776 78887742100 0100 000 0011 111 1121 122221 3799
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q 005203 640 GGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVR 684 (709)
Q Consensus 640 GGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~ 684 (709)
+|||||++++ .+||+.+...+.+.|++..
T Consensus 165 ~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 165 SPLRSRFGII----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp HHHHTTCSEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred HHHHHhcCce----------------eeCCCCCHHHHHHHHHHHH
Confidence 9999998655 6788877888888887654
No 157
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.01 E-value=5.2e-12 Score=142.25 Aligned_cols=161 Identities=15% Similarity=0.203 Sum_probs=99.4
Q ss_pred eeeEEecCCcEEEEEcCCCCcHHHHHHHHhc--CCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhc
Q 005203 520 HVNISVNPGEVVAIAGLSGSGKSTLVNLLLR--LYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNIS 597 (709)
Q Consensus 520 ~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlg--l~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~ 597 (709)
.+++++.+|..+.|.|+|||||||+++.|.. ++.++.|++.+.+.|.+......|.. =|+++. ++.+|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd-- 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTD-- 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCS--
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecC--
Confidence 4788899999999999999999999999876 77888899999898887655554432 123321 11111
Q ss_pred cCCCCCCCHHHHHHHHHHHh-----hHHHHHcCCCCcccccCC-----CCCChHHHHHH----------HHHHHhccCCC
Q 005203 598 YGCTQDIKQQDIEWAAKQAY-----AHDFIMSLPSGYETLVDD-----DLLSGGQKQRI----------AIARAILRDPT 657 (709)
Q Consensus 598 ~g~~~~~~~e~i~~aa~~a~-----l~d~I~~LP~GydT~vGe-----~~LSGGQkQRI----------aLARALlr~p~ 657 (709)
.++..++++.+. =.+...+ .|....-+- ..+||||+||. ++|+++-..|.
T Consensus 229 --------~~~a~~~L~~~~~EmerR~~ll~~--~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 229 --------MKDAANALRWCVNEMERRYKLMSA--LGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHH--TTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHH--cCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCc
Confidence 122222221110 0011111 122221110 14789998863 46788888998
Q ss_pred -EEEEeCCCCCCCHHHHHHHHHHHHHhh-ccCCCCcEEEEEecChh
Q 005203 658 -ILILDEATSALDAESEHNIKGVLRAVR-SDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 658 -ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~~~~~TvIiIAHRls 701 (709)
++++||+++.+|.. .+.+.+.|.++. .+...|.++|++|||++
T Consensus 299 ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 89999999998843 334555554432 11123689999999998
No 158
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.00 E-value=8.3e-10 Score=116.54 Aligned_cols=129 Identities=14% Similarity=0.157 Sum_probs=83.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIK 605 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~ 605 (709)
++|++++++|++|+||||+++.|++.+.|++| ++++++.+|++ ..+..|+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eq---------- 152 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQ---------- 152 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHH----------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHH----------
Confidence 47999999999999999999999999998888 35777777763 2222222
Q ss_pred HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc
Q 005203 606 QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRS 685 (709)
Q Consensus 606 ~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~ 685 (709)
+...++..+ +| -... ..++..+.+++++ ++|+++|+| |+++|...+..+.+..+-+..
T Consensus 153 ---L~~~~~~~g-------l~----~~~~----~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 153 ---LKTYAELLQ-------AP----LEVC----YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp ---HHHHHTTTT-------CC----CCBC----SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred ---HHHHHHhcC-------CC----eEec----CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 222222111 11 1111 1245567888875 999999999 999998877666554433321
Q ss_pred cCCCCcEEEEE--ecChhhhhhhc
Q 005203 686 DTMTRRTVLVI--AHRLISTALSF 707 (709)
Q Consensus 686 ~~~~~~TvIiI--AHRlsti~~~~ 707 (709)
. ....+.+++ +|....+...+
T Consensus 211 ~-~~~~~~lVl~at~~~~~~~~~~ 233 (296)
T 2px0_A 211 E-SSIQSFLVLSATAKYEDMKHIV 233 (296)
T ss_dssp C-TTEEEEEEEETTBCHHHHHHHT
T ss_pred c-CCCeEEEEEECCCCHHHHHHHH
Confidence 0 112456666 89877665443
No 159
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.00 E-value=6.1e-11 Score=117.04 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=56.9
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCH-HHHh
Q 005203 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDI-SSNI 596 (709)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI-~eNI 596 (709)
|+++++|+.++|+||||||||||+++|+|++ | .+.++|.++........+..++|++|++.+|.... .+|+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 5788999999999999999999999999997 3 68899988877666666888999999999886543 4444
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.98 E-value=4.4e-13 Score=137.69 Aligned_cols=140 Identities=16% Similarity=0.167 Sum_probs=99.5
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceE
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIG 579 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~ 579 (709)
.++++++..|.. +.+++++++++++| ++|+||||||||||++.+++... .|.|.++|.++.+......++.++
T Consensus 26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 456778777752 56899999999999 99999999999999999999886 799999998875544445566788
Q ss_pred EEcccCc-cc-ccCHHHHh-ccCCCCCC----CHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHh
Q 005203 580 FVGQEPK-LF-RMDISSNI-SYGCTQDI----KQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAI 652 (709)
Q Consensus 580 ~V~Qd~~-LF-~gTI~eNI-~~g~~~~~----~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARAL 652 (709)
.++|+.. .+ .-++.||| .++..... ..++..+.+ .+.+. .|||||+||..+|+|+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll~-------------~l~g~~~~~~~i~~a~ 160 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV-------------EMDGFEKDTAIVVMAA 160 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHHH-------------HHHTCCTTCCEEEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHHH-------------HHhCCCCCCCEEEEEc
Confidence 8888764 33 34567777 44321010 111211111 12222 3689999999999999
Q ss_pred ccCCCEEEEeCCCC
Q 005203 653 LRDPTILILDEATS 666 (709)
Q Consensus 653 lr~p~ILILDEaTS 666 (709)
..+|++ ||++.-
T Consensus 161 t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 161 TNRPDI--LDPALL 172 (254)
T ss_dssp ESCGGG--SCGGGG
T ss_pred cCCchh--CCHHHc
Confidence 999987 788764
No 161
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.97 E-value=1e-10 Score=114.64 Aligned_cols=78 Identities=28% Similarity=0.445 Sum_probs=61.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCC-------------CCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHH
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRLYE-------------PTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl~~-------------p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (709)
|+.++|+||||||||||+++|+|+++ |.+|++ +|.++...+.+.+++.+ .|+..++.+++.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 888986 89888777777777754 3777788888888
Q ss_pred HhccCCCCCCCHHHHHHHHHH
Q 005203 595 NISYGCTQDIKQQDIEWAAKQ 615 (709)
Q Consensus 595 NI~~g~~~~~~~e~i~~aa~~ 615 (709)
|+ ||.+ .+++.++++.
T Consensus 76 ~~-yg~~----~~~i~~~l~~ 91 (186)
T 3a00_A 76 NY-YGST----VASVKQVSKS 91 (186)
T ss_dssp EE-EEEE----HHHHHHHHHT
T ss_pred ee-ccCc----HHHHHHHHHc
Confidence 86 6633 4555555443
No 162
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.97 E-value=8.6e-11 Score=116.67 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=68.7
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC-------------CCcceEEECCEeCCCCCHHHHhcceEEEcccCccc
Q 005203 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE-------------PTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLF 588 (709)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-------------p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF 588 (709)
|+...+|+.++|+||||||||||++.|++.++ |..|+ +||+|..-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34456899999999999999999999999986 88898 799999999999999976 6999999
Q ss_pred ccCHHHHhccCCCCCCCHHHHHHHHH
Q 005203 589 RMDISSNISYGCTQDIKQQDIEWAAK 614 (709)
Q Consensus 589 ~gTI~eNI~~g~~~~~~~e~i~~aa~ 614 (709)
.+++.+| .||.+ .+.+.++++
T Consensus 88 ~~~~~~n-~YGt~----~~~v~~~l~ 108 (197)
T 3ney_A 88 FGSYQGN-MFGTK----FETVHQIHK 108 (197)
T ss_dssp EEEETTE-EEEEE----HHHHHHHHH
T ss_pred hhhhhce-ecccc----hhhHHHHHh
Confidence 9999999 48843 444555443
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.94 E-value=2.6e-11 Score=123.21 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=53.7
Q ss_pred cEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCC--------
Q 005203 499 RIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVD-------- 570 (709)
Q Consensus 499 ~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~-------- 570 (709)
.|+++|++..|. . ++++++ +.++|+||||||||||+++|+|++.|++|+|.+||.++...+
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 588899866553 1 566677 899999999999999999999999999999999999984322
Q ss_pred HHHHhcceEEEccc
Q 005203 571 IKWLRGRIGFVGQE 584 (709)
Q Consensus 571 ~~~lR~~I~~V~Qd 584 (709)
....+..+++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 23457889999986
No 164
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.90 E-value=1.6e-10 Score=112.62 Aligned_cols=81 Identities=15% Similarity=0.107 Sum_probs=63.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CcceEE----------ECCEeCCCCCHHHHhcceEEEcccCcccccCHHH
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEP-TNGQIL----------IDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-~~G~I~----------idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (709)
.+|+.++|+||||||||||+++|++++++ ..|.|. +||.++..++.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999873 344443 47778777888888874 67999999999999
Q ss_pred HhccCCCCCCCHHHHHHHHH
Q 005203 595 NISYGCTQDIKQQDIEWAAK 614 (709)
Q Consensus 595 NI~~g~~~~~~~e~i~~aa~ 614 (709)
| .+|.+ .+.+.++++
T Consensus 80 n-~yg~~----~~~i~~~l~ 94 (180)
T 1kgd_A 80 A-MYGTK----LETIRKIHE 94 (180)
T ss_dssp E-EEEEE----HHHHHHHHH
T ss_pred c-ccccc----HHHHHHHHH
Confidence 9 56633 455555443
No 165
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.87 E-value=4.3e-10 Score=111.61 Aligned_cols=106 Identities=19% Similarity=0.157 Sum_probs=66.3
Q ss_pred eeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCC
Q 005203 521 VNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGC 600 (709)
Q Consensus 521 lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~ 600 (709)
+-=++++|+.++|+|+|||||||+++.|.+.++ .+.+++||+.+|++ +|+.++.
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~ 67 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDK 67 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCT
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccc
Confidence 334689999999999999999999999999985 48999999999987 7887653
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 005203 601 TQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEAT 665 (709)
Q Consensus 601 ~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaT 665 (709)
+ ...+.++.++.+...+.+++.++..+. + .-.++.|.++ ..+++++|+|=+.
T Consensus 68 ~-~~~~~~~~~~~~~~~l~~~i~~~l~~~---~-~~~~~~~~~~--------~~~~~~vi~eg~~ 119 (207)
T 2qt1_A 68 N-GFLQYDVLEALNMEKMMSAISCWMESA---R-HSVVSTDQES--------AEEIPILIIEGFL 119 (207)
T ss_dssp T-SCBCCSSGGGBCHHHHHHHHHHHHHHH---T-TSSCCC-------------CCCCEEEEECTT
T ss_pred c-CCChhHHHHHhHHHHHHHHHHHHHhCC---C-CCCcCCCeee--------cCCCCEEEEeehH
Confidence 3 222222223333444444443321110 0 1134556554 4567788886543
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.85 E-value=1e-09 Score=107.96 Aligned_cols=139 Identities=22% Similarity=0.128 Sum_probs=77.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-----CCC------cceEEECCEeCC-----CCCHHHHhcceEEEcccCcccccCHH
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY-----EPT------NGQILIDGFPIK-----EVDIKWLRGRIGFVGQEPKLFRMDIS 593 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~-----~p~------~G~I~idG~di~-----~~~~~~lR~~I~~V~Qd~~LF~gTI~ 593 (709)
+++|+|++|||||||++.++|.. .|+ .|+|.+||.++. .-+.+.+++......|+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~------ 80 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVG------ 80 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSE------
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCE------
Confidence 68999999999999999999984 243 679999997652 12334444433333333211
Q ss_pred HHhccCCCCCCCHHHHHHHHHHHhhHHHHHc-CCCCcc-cccCC-CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 005203 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMS-LPSGYE-TLVDD-DLLSGGQKQRIAIARAILRDPTILILDEATSALDA 670 (709)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~-LP~Gyd-T~vGe-~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~ 670 (709)
-|...+ -.+.....++... .+.+.. -+.+.- -.++. ..|..-.......||++.++|+++++| ||++|.
T Consensus 81 -~i~v~d--~~~~~s~~~~~~~---~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sal~~ 152 (199)
T 2f9l_A 81 -ALLVYD--IAKHLTYENVERW---LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIE--TSALDS 152 (199)
T ss_dssp -EEEEEE--TTCHHHHHTHHHH---HHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred -EEEEEE--CcCHHHHHHHHHH---HHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEE--EeCCCC
Confidence 011111 1111211111111 111111 111111 12232 234322222356699999999999999 999999
Q ss_pred HHHHHHHHHHHH
Q 005203 671 ESEHNIKGVLRA 682 (709)
Q Consensus 671 ~tE~~I~~~L~~ 682 (709)
++-..+.+.|.+
T Consensus 153 ~~i~~l~~~l~~ 164 (199)
T 2f9l_A 153 TNVEEAFKNILT 164 (199)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 988888777743
No 167
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.82 E-value=1.4e-09 Score=109.99 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=84.6
Q ss_pred ccceee-eEEecCCcEEEEEcCCCCcHHHHH-HHHhcCCCCCcceEEECCEeCCCCCHHHH---hcceEEEcccCccccc
Q 005203 516 PVLQHV-NISVNPGEVVAIAGLSGSGKSTLV-NLLLRLYEPTNGQILIDGFPIKEVDIKWL---RGRIGFVGQEPKLFRM 590 (709)
Q Consensus 516 ~vL~~l-sl~I~~Ge~vAIVG~SGsGKSTLl-kLLlgl~~p~~G~I~idG~di~~~~~~~l---R~~I~~V~Qd~~LF~g 590 (709)
+.|+++ .--+++|+.++|+||+|||||||+ +++.+..++..+.+++++.. +...+ .+.+++.+|+...
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~--- 82 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE--- 82 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH---
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh---
Confidence 456666 567999999999999999999995 55556655555566666532 22322 2345555554311
Q ss_pred CHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCC
Q 005203 591 DISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL--RDPTILILDEATSAL 668 (709)
Q Consensus 591 TI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl--r~p~ILILDEaTSaL 668 (709)
.+|+.+.+. . .+.+ ..++. .+-.+-+. +....+....++.++ .+|+++++||+|+-+
T Consensus 83 --~~~l~~~~~-~--~~~~-------------~~~~~-~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~ 141 (247)
T 2dr3_A 83 --KGMFAMVDA-F--TAGI-------------GKSKE-YEKYIVHD--LTDIREFIEVLRQAIRDINAKRVVVDSVTTLY 141 (247)
T ss_dssp --HTSEEEEEC-S--TTTT-------------CC--C-CCSCBCSC--CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGT
T ss_pred --CCcEEEEec-c--hhhc-------------ccccc-cccccccC--ccCHHHHHHHHHHHHHHhCCCEEEECCchHhh
Confidence 113332210 0 0000 00000 00011111 122334344444444 469999999999887
Q ss_pred --CHHHHHHHHHHHHHhhccCCCCcEEEEEecChhh
Q 005203 669 --DAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 669 --D~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
|....+.....+.++.++ .++|+|+++|....
T Consensus 142 ~~~~~~~~~~l~~l~~~~~~--~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 142 INKPAMARSIILQLKRVLAG--TGCTSIFVSQVSVG 175 (247)
T ss_dssp TTCGGGHHHHHHHHHHHHHH--TTCEEEEEEECC--
T ss_pred cCCHHHHHHHHHHHHHHHHH--CCCeEEEEecCCCC
Confidence 554444444455443322 26899999998764
No 168
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.82 E-value=1.2e-10 Score=134.88 Aligned_cols=157 Identities=16% Similarity=0.147 Sum_probs=103.7
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-ceEEECCEeCCCCCHHHHhcceEEEcccC--------
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN-GQILIDGFPIKEVDIKWLRGRIGFVGQEP-------- 585 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~-G~I~idG~di~~~~~~~lR~~I~~V~Qd~-------- 585 (709)
..+++++++.+++|+.+.|+||||||||||++.|.|++++.. |.+.+++.+.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 468999999999999999999999999999999999999988 8999988776543 45588887754
Q ss_pred --------------ccc-ccCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHH
Q 005203 586 --------------KLF-RMDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIAR 650 (709)
Q Consensus 586 --------------~LF-~gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLAR 650 (709)
..| ..++.+|+...+. ......+... ......+.+.... ++..- ...+|+|++|++..++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~-~~~~~~~v~~-~~~~~~~L~G~~~--~~~~~-~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNC-GRTKAPFIDA-TGAHAGALLGDVR--HDPFQ-SGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCT-TCSSCCEEEC-TTCCHHHHHCEEC--CCCC-----CCCCGGGGEECCH
T ss_pred HHhhccchhhhhhcccccccccccceeeccc-cCCCCCEEEc-CCCCHHhcCceEE--echhh-cCCccccccccccCce
Confidence 111 2223334433211 0000000000 0001111111110 11100 0358999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005203 651 AILRDPTILILDEATSALDAESEHNIKGVLRA 682 (709)
Q Consensus 651 ALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~ 682 (709)
....++.+|+|||... |+++....+.+.|++
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999988 899988888888874
No 169
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.81 E-value=2e-09 Score=125.70 Aligned_cols=133 Identities=17% Similarity=0.112 Sum_probs=99.2
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccC
Q 005203 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP--TNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYG 599 (709)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p--~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g 599 (709)
|+++++|++++|+|++|+|||||++.|++...+ ..|+| .+|.++.++...+.++.|++++|...++.+++..||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987765 77999 799999999999999999999999999999998888632
Q ss_pred CCCCCC-HHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 005203 600 CTQDIK-QQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKG 678 (709)
Q Consensus 600 ~~~~~~-~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~ 678 (709)
|...+ ..++..+++ .-++.++++| ||+++|..++..+..
T Consensus 82 -pG~~~f~~~~~~~l~--------------------------------------~ad~~ilVvD-~~~g~~~qt~~~~~~ 121 (665)
T 2dy1_A 82 -PGYGDFVGEIRGALE--------------------------------------AADAALVAVS-AEAGVQVGTERAWTV 121 (665)
T ss_dssp -CCSGGGHHHHHHHHH--------------------------------------HCSEEEEEEE-TTTCSCHHHHHHHHH
T ss_pred -CCccchHHHHHHHHh--------------------------------------hcCcEEEEEc-CCcccchhHHHHHHH
Confidence 21111 122222222 1356688888 999999888755443
Q ss_pred HHHHhhccCCCCcEEEEEecChhh
Q 005203 679 VLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 679 ~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
+. +. +.++|++.|+...
T Consensus 122 ~~-~~------~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 122 AE-RL------GLPRMVVVTKLDK 138 (665)
T ss_dssp HH-HT------TCCEEEEEECGGG
T ss_pred HH-Hc------cCCEEEEecCCch
Confidence 32 22 3788888888764
No 170
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.80 E-value=5.3e-11 Score=129.65 Aligned_cols=137 Identities=15% Similarity=0.134 Sum_probs=90.0
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHH
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (709)
..+++++|+++++|+.++|+||||||||||++.|+|.+ +|++..-+ . +.+.++..+|+++|...+ +.|
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~---~~~~~~~~lg~~~q~~~~----l~d 223 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--L---PLDRLNFELGVAIDQFLV----VFE 223 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--S---CTTTHHHHHGGGTTCSCE----EET
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--c---cchhHHHHHHHhcchhHH----HHH
Confidence 46899999999999999999999999999999999964 67776511 1 112334458889998765 355
Q ss_pred HhccCCC--CCC-CHHHHHHHHHHHhhHHHHHc---------CCCCccccc-----CC--CCCChHHHHHHHHHHHhccC
Q 005203 595 NISYGCT--QDI-KQQDIEWAAKQAYAHDFIMS---------LPSGYETLV-----DD--DLLSGGQKQRIAIARAILRD 655 (709)
Q Consensus 595 NI~~g~~--~~~-~~e~i~~aa~~a~l~d~I~~---------LP~GydT~v-----Ge--~~LSGGQkQRIaLARALlr~ 655 (709)
++..... .+. ..+.+. ....+.+.+.. -|+-.+... .+ ..+++|.+||++.+.+++.+
T Consensus 224 d~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~ 300 (377)
T 1svm_A 224 DVKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPK 300 (377)
T ss_dssp TCCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCC
T ss_pred HHHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCC
Confidence 6655422 001 001111 12234444321 111111111 11 36899999999999999999
Q ss_pred CCEEE-EeCCCC
Q 005203 656 PTILI-LDEATS 666 (709)
Q Consensus 656 p~ILI-LDEaTS 666 (709)
|++++ ||+|+.
T Consensus 301 pDLliyLd~~~~ 312 (377)
T 1svm_A 301 DYLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHHTCTH
T ss_pred CCeEEEEeCCHH
Confidence 99988 998886
No 171
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.69 E-value=2.5e-08 Score=107.68 Aligned_cols=124 Identities=20% Similarity=0.293 Sum_probs=73.2
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcce-EEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCC
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQ-ILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQ 602 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~-I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~ 602 (709)
-+++|+.+.|.||+|||||||+.-++.......|. ++++... ..+. .+.+.+|+.+| |+.+.++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~-----------~l~i~~~- 121 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTD-----------SLLVSQP- 121 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGG-----------GCEEECC-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHH-----------HeEEecC-
Confidence 58899999999999999999987777555444444 4454432 1222 12223333222 2222211
Q ss_pred CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccC--CCEEEEeCCCCCC----------CH
Q 005203 603 DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRD--PTILILDEATSAL----------DA 670 (709)
Q Consensus 603 ~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~--p~ILILDEaTSaL----------D~ 670 (709)
. +.+ |-+.+++++.++ |+++|+||+|+.+ |.
T Consensus 122 ~-~~e------------------------------------~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 122 D-TGE------------------------------------QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp S-SHH------------------------------------HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred C-CHH------------------------------------HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 1 111 223477888765 9999999999988 22
Q ss_pred ---HHHHHHHHHHHHhh---ccCCCCcEEEEEecChh
Q 005203 671 ---ESEHNIKGVLRAVR---SDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 671 ---~tE~~I~~~L~~l~---~~~~~~~TvIiIAHRls 701 (709)
..++.+.+.++++. ++ .++|+|+++|-.+
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~--~~~tVI~inh~~~ 199 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNN--SGTTAIFINELRE 199 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH--HTCEEEEEEECC-
T ss_pred hhhHHHHHHHHHHHHHHHHHHH--hCCEEEEEecccc
Confidence 12224445554442 11 2599999999654
No 172
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.66 E-value=2.9e-09 Score=104.90 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=41.5
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcc
Q 005203 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKL 587 (709)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~L 587 (709)
++|++|+.++|+|||||||||++++|.+++.|+.| +.+ +....... ...+..+++++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~ 62 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDA 62 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHH
Confidence 46899999999999999999999999999988666 222 22222221 1123347788877643
No 173
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.63 E-value=1.5e-08 Score=109.57 Aligned_cols=161 Identities=15% Similarity=0.117 Sum_probs=86.3
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhc--CCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCH
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR--LYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDI 592 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlg--l~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI 592 (709)
..+|++++++++ .|++||++|||||||++.|.| ++++.+|.+.-....+.-.+...-....+...+.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~------ 94 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPR------ 94 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTT------
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCC------
Confidence 358999999999 999999999999999999999 778888876544433321110000122333332211
Q ss_pred HHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcC---------------CCCc-----ccccCC------CCCChHHHHHH
Q 005203 593 SSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSL---------------PSGY-----ETLVDD------DLLSGGQKQRI 646 (709)
Q Consensus 593 ~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~L---------------P~Gy-----dT~vGe------~~LSGGQkQRI 646 (709)
.. -.+.+++.+...... +.+..- |.+. ||+ |- ..-+++++|+.
T Consensus 95 ---~~-----~~~~~~v~~~i~~~~--~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtP-G~~~~~~~~q~~~~~~~~~ 163 (360)
T 3t34_A 95 ---KK-----FTDFAAVRKEIQDET--DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLP-GLTKVAVDGQSDSIVKDIE 163 (360)
T ss_dssp ---CC-----BSCHHHHHHHHHHHH--HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECC-CBCSSCCTTCCSSHHHHHH
T ss_pred ---cc-----cCCHHHHHHHHHHHH--HHhcCCCCCcccceEEEEEeCCCCCCeEEEECC-CCCcCCcCCCchhHHHHHH
Confidence 01 112333333322111 000000 1111 111 21 23678899999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEec
Q 005203 647 AIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAH 698 (709)
Q Consensus 647 aLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAH 698 (709)
.++++.+++|+.+||.-..+..|..+ ....+.++.+.+. ..+|+++++.
T Consensus 164 ~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~--~~~~i~V~nK 212 (360)
T 3t34_A 164 NMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPS--GDRTFGVLTK 212 (360)
T ss_dssp HHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTT--CTTEEEEEEC
T ss_pred HHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhccc--CCCEEEEEeC
Confidence 99999999999877774333445444 3334445554321 1357777664
No 174
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.62 E-value=4.5e-09 Score=117.39 Aligned_cols=155 Identities=13% Similarity=0.186 Sum_probs=100.1
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-eEEECCEeCCCCCHHHHhcce-----EEEcccCcccc
Q 005203 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG-QILIDGFPIKEVDIKWLRGRI-----GFVGQEPKLFR 589 (709)
Q Consensus 516 ~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G-~I~idG~di~~~~~~~lR~~I-----~~V~Qd~~LF~ 589 (709)
+.|+++..-+++|+.+.|.|++|+|||||+.-+++...+..| .|.+-+.. .+...+++++ ++..|
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~~~------ 261 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNINAQ------ 261 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCCHH------
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCCHH------
Confidence 467888878999999999999999999999999988876555 56665433 3455555442 22222
Q ss_pred cCHHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCC-CCCChHHHHHHHHHHHhc--cCCCEEEEeCCCC
Q 005203 590 MDISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDD-DLLSGGQKQRIAIARAIL--RDPTILILDEATS 666 (709)
Q Consensus 590 gTI~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe-~~LSGGQkQRIaLARALl--r~p~ILILDEaTS 666 (709)
++.-| ..++++...+.+.+ +.+...| -.+.+ ..+|++|.+ +.||++. .+|+++|+|+++.
T Consensus 262 -----~l~~g---~l~~~~~~~~~~a~---~~l~~~~----l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 262 -----NLRTG---KLTPEDWGKLTMAM---GSLSNAG----IYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp -----HHHTS---CCCHHHHHHHHHHH---HHHHSSC----EEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred -----HHhcC---CCCHHHHHHHHHHH---HHHhcCC----EEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 23223 23444443333222 2333322 22223 479999986 5677776 5799999999998
Q ss_pred CCCHH--------HHHHHHHHHHHhhccCCCCcEEEEEec
Q 005203 667 ALDAE--------SEHNIKGVLRAVRSDTMTRRTVLVIAH 698 (709)
Q Consensus 667 aLD~~--------tE~~I~~~L~~l~~~~~~~~TvIiIAH 698 (709)
-.+.. .-..+.+.|+++.++ .++|+|+++|
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke--~~i~vi~~sq 362 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARE--LEVPVIALSQ 362 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHH--HTCCEEEEEC
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEEec
Confidence 77432 114555666665433 2589999999
No 175
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.60 E-value=5.4e-08 Score=109.00 Aligned_cols=119 Identities=20% Similarity=0.304 Sum_probs=80.1
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHH
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (709)
+..++++++++++| +.|+||+|+|||||++.+.+.... + + +.-+..+
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------~------------f---------~~is~~~ 84 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------P------------F---------FHISGSD 84 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------C------------E---------EEEEGGG
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------C------------e---------eeCCHHH
Confidence 45788888888888 999999999999999999983310 0 0 1001111
Q ss_pred HhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCC----------
Q 005203 595 NISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEA---------- 664 (709)
Q Consensus 595 NI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEa---------- 664 (709)
.... .+| .|++++|-.+++|....|.||++||+
T Consensus 85 ~~~~---------------------------------~~g----~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 85 FVEL---------------------------------FVG----VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp TTTC---------------------------------CTT----HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----
T ss_pred HHHH---------------------------------Hhc----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc
Confidence 0000 012 27899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc-cCCCCcEEEEEecChhhh
Q 005203 665 TSALDAESEHNIKGVLRAVRS-DTMTRRTVLVIAHRLIST 703 (709)
Q Consensus 665 TSaLD~~tE~~I~~~L~~l~~-~~~~~~TvIiIAHRlsti 703 (709)
+++.|.+.++.+++.+..+.. +...+..+|..||+++.+
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 346777777777777766531 001247888899999754
No 176
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.59 E-value=3.2e-09 Score=121.03 Aligned_cols=72 Identities=32% Similarity=0.372 Sum_probs=56.5
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-eE-EECCEeCCC-------CCH---HHHhcceEEEcccCccccc
Q 005203 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG-QI-LIDGFPIKE-------VDI---KWLRGRIGFVGQEPKLFRM 590 (709)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G-~I-~idG~di~~-------~~~---~~lR~~I~~V~Qd~~LF~g 590 (709)
..+++|+.++|+|+||||||||+++|+|.+.|++| +| ++||.++.+ ++. ..+++.+++|.|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 36889999999999999999999999999999987 78 499977632 222 23556789999973
Q ss_pred CHHHHhccC
Q 005203 591 DISSNISYG 599 (709)
Q Consensus 591 TI~eNI~~g 599 (709)
+..+|+.+.
T Consensus 439 ~~~~~ivi~ 447 (552)
T 3cr8_A 439 TKNRGIAIC 447 (552)
T ss_dssp HHTTCEEEE
T ss_pred HhcCCEEEE
Confidence 456677654
No 177
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.59 E-value=4.6e-09 Score=108.18 Aligned_cols=52 Identities=21% Similarity=0.386 Sum_probs=36.0
Q ss_pred cEEEEEE-EEEcCCCCCCccceeeeEEecC---CcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 499 RIDFVDV-SFRYSSREMVPVLQHVNISVNP---GEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 499 ~I~~~nV-sF~Y~~~~~~~vL~~lsl~I~~---Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.++++|| +|+|.+ +.++|+|+||+|++ |++++|+|+|||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 35799999999999 9999999999999999999998855
No 178
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.58 E-value=1.5e-09 Score=107.28 Aligned_cols=61 Identities=30% Similarity=0.489 Sum_probs=47.1
Q ss_pred EEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE--EECCEeCC
Q 005203 503 VDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI--LIDGFPIK 567 (709)
Q Consensus 503 ~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I--~idG~di~ 567 (709)
+|+++++.+ ....+..++..++|+.++|+|||||||||++++|.+.+. ..|.+ ++||.++.
T Consensus 3 ~~~~~~~~~---~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECS---VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CC---CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccccc---cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 466665542 456788899999999999999999999999999999998 77988 99987664
No 179
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.55 E-value=1e-08 Score=99.23 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=48.8
Q ss_pred eeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE--eCCCCCH----HHHhcceEEEcccC
Q 005203 519 QHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF--PIKEVDI----KWLRGRIGFVGQEP 585 (709)
Q Consensus 519 ~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~--di~~~~~----~~lR~~I~~V~Qd~ 585 (709)
+++++++.+| .++|+||||||||||++.|.+++.+..|...-.+. ++-..+. ...+..|.++.|++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 6789999999 99999999999999999999988887775433331 1111111 12456799999985
No 180
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.53 E-value=9.5e-09 Score=101.55 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=50.3
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCccccc-CHHHHhc
Q 005203 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRM-DISSNIS 597 (709)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~g-TI~eNI~ 597 (709)
.++-++|+.++|+|||||||||++++|.|.+ |.+.+||.++..- ....+..+++++|++.++.. ++.+|+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEWM 94 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 4667899999999999999999999999988 9999999887531 11223357889998765532 4555553
No 181
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.52 E-value=1.4e-08 Score=101.25 Aligned_cols=71 Identities=23% Similarity=0.244 Sum_probs=56.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CcceEE----------ECCEeCCCCCHHHHhcceEEEcccCcccccCHHH
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEP-TNGQIL----------IDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISS 594 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-~~G~I~----------idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~e 594 (709)
++|+.++|+||||||||||++.|++.++| ..+.+. .+|.+....+...+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999987 333333 457677667788887765 6788888888877
Q ss_pred HhccCC
Q 005203 595 NISYGC 600 (709)
Q Consensus 595 NI~~g~ 600 (709)
| .||.
T Consensus 83 ~-~yg~ 87 (208)
T 3tau_A 83 N-YYGT 87 (208)
T ss_dssp E-EEEE
T ss_pred c-cCCC
Confidence 7 4663
No 182
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.49 E-value=6.1e-08 Score=105.15 Aligned_cols=141 Identities=18% Similarity=0.235 Sum_probs=82.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-----------CCcceEEECCEeCCCCCHHHHhcceEEEcccCcc----cccCHH-
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYE-----------PTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKL----FRMDIS- 593 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~-----------p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~L----F~gTI~- 593 (709)
.++|||++|+|||||++.|+|... |+.|.|.++|.++.- ....|++.|.|.- |..|+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l------~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML------VDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE------EECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE------EeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999876 678999999987632 2345555553321 332322
Q ss_pred ----HHhccC-CCCCCCHHHHHHHHHHHhhHHHHHcCC-CCccc-ccCC--CCCChHHHHHHHHH----HHh-ccCCCEE
Q 005203 594 ----SNISYG-CTQDIKQQDIEWAAKQAYAHDFIMSLP-SGYET-LVDD--DLLSGGQKQRIAIA----RAI-LRDPTIL 659 (709)
Q Consensus 594 ----eNI~~g-~~~~~~~e~i~~aa~~a~l~d~I~~LP-~GydT-~vGe--~~LSGGQkQRIaLA----RAL-lr~p~IL 659 (709)
|++.+- +..+. +.+..+..+ ...+.+..+. .+.-. .|+. ..+|+|++||+.++ +++ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~-~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFS-ENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGSSEEEEEEETTSC-HHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHhCCEEEEEEECCCC-cchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 223221 11111 101111111 1112222211 11111 1232 25788999998877 776 545555
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHh
Q 005203 660 ILDEATSALDAESEHNIKGVLRAV 683 (709)
Q Consensus 660 ILDEaTSaLD~~tE~~I~~~L~~l 683 (709)
+|||++|.+.-..+.+.|.+.
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHH
Confidence 899999999988888888653
No 183
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.47 E-value=3.4e-09 Score=119.47 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=95.8
Q ss_pred EEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEE
Q 005203 501 DFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGF 580 (709)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~ 580 (709)
+++++...|.+ +.+++++++++++| +.|+||+|+|||||++.+.+... .|.|.++|.++.+......++++..
T Consensus 42 ~l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 45555555642 46899999999999 99999999999999999999875 7899999988866544555666778
Q ss_pred EcccCc-ccc-cCHHHHh-ccCCCCC----CCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc
Q 005203 581 VGQEPK-LFR-MDISSNI-SYGCTQD----IKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL 653 (709)
Q Consensus 581 V~Qd~~-LF~-gTI~eNI-~~g~~~~----~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl 653 (709)
++|+.. .+. -.+.|+| .++.... ...++..+.+ ...+.. |||||+|+..+++|..
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~~-------------Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLVE-------------MDGFEKDTAIVVMAAT 176 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHHH-------------GGGCCSSCCCEEEECC
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHHH-------------hcccccCccEEEEEec
Confidence 888864 232 3456777 4442111 0122222221 122222 5788888888888888
Q ss_pred cCCCEEEEeCCCC
Q 005203 654 RDPTILILDEATS 666 (709)
Q Consensus 654 r~p~ILILDEaTS 666 (709)
.+|++ ||||.-
T Consensus 177 n~p~~--LD~aLl 187 (499)
T 2dhr_A 177 NRPDI--LDPALL 187 (499)
T ss_dssp SCGGG--SCTTTS
T ss_pred CChhh--cCcccc
Confidence 88887 788765
No 184
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.47 E-value=3.2e-08 Score=105.52 Aligned_cols=68 Identities=15% Similarity=0.264 Sum_probs=56.0
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH----HHH-----hcceEEE-ccc
Q 005203 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI----KWL-----RGRIGFV-GQE 584 (709)
Q Consensus 517 vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~----~~l-----R~~I~~V-~Qd 584 (709)
+++++||++++|++++++|++|+||||++..|++.+.+++|+|.+.+.|...... ..| +..+.++ +|+
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 3467888899999999999999999999999999999999999999988765331 344 5678888 554
No 185
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=6.8e-08 Score=95.30 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=25.1
Q ss_pred EcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 508 RYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 508 ~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+|++++..+.++|+||++++|+.++|+|+|||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 566666678999999999999999999999999999999999876
No 186
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.41 E-value=3e-09 Score=116.36 Aligned_cols=153 Identities=14% Similarity=0.122 Sum_probs=92.3
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhc------------CCCCCcceEEECCEeCCCCC-HHHHhcce---EEEcccCcc
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLR------------LYEPTNGQILIDGFPIKEVD-IKWLRGRI---GFVGQEPKL 587 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlg------------l~~p~~G~I~idG~di~~~~-~~~lR~~I---~~V~Qd~~L 587 (709)
++++|++++|||++|+|||||++.|+| ..+|+.|.|.++|..+..+. ...-++.+ ..+.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 678999999999999999999999999 67899999999885432110 00111122 356666665
Q ss_pred cccC-HHHHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCc-ccccCCCCCChHHHHHHHHHHHhccCC--CEEEEeC
Q 005203 588 FRMD-ISSNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGY-ETLVDDDLLSGGQKQRIAIARAILRDP--TILILDE 663 (709)
Q Consensus 588 F~gT-I~eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~Gy-dT~vGe~~LSGGQkQRIaLARALlr~p--~ILILDE 663 (709)
..+. -.|+ .. .+....++.+.. |..+=+.. |..+ ..+||+. +| +++++||
T Consensus 96 ~~~~s~~e~--------L~-~~fl~~ir~~d~---il~Vvd~~~d~~i--~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVG--------LG-NAFLSHVRAVDA---IYQVVRAFDDAEI--IHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSS--------SC-HHHHHHHTTCSE---EEEEEECCCTTCS--SCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHH--------HH-HHHHHHHHHHHH---HHHHHhcccccee--eeecccc------------Ccchhhhhchh
Confidence 5431 1111 11 112111111110 00000000 0000 1356653 89 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHHh-hccCCCCcEEEEEecChhhhhhhc
Q 005203 664 ATSALDAESEHNIKGVLRAV-RSDTMTRRTVLVIAHRLISTALSF 707 (709)
Q Consensus 664 aTSaLD~~tE~~I~~~L~~l-~~~~~~~~TvIiIAHRlsti~~~~ 707 (709)
+++.+|.+.-++..+.++.. .+. |.|+ ++|.++.+..-|
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~---g~ti--~sh~~~~~~~l~ 189 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRG---ANTL--EMKAKKEEQAII 189 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCS---SCSS--SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc---CCcc--ccccHHHHHHHH
Confidence 99999999988888888776 432 4564 399887665433
No 187
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.34 E-value=5.8e-08 Score=104.86 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=50.4
Q ss_pred CCCcEEEEEEEEEcCCCCCCccce--------------eeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 496 LMGRIDFVDVSFRYSSREMVPVLQ--------------HVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 496 ~~~~I~~~nVsF~Y~~~~~~~vL~--------------~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
..+.|+|+||+|.||. ++.+|+ |+++.|.+||+++|+||||||||||++.|.+..
T Consensus 130 ~~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 130 ARNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HTTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3578999999999996 367899 899999999999999999999999999999875
No 188
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.33 E-value=4.7e-07 Score=107.46 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=52.3
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhccCCCCcEEEE-EecChhhhhhhc
Q 005203 637 LLSGGQKQRIAIARAILRDPTILILDEATS-ALDAESEHNIKGVLRAVRSDTMTRRTVLV-IAHRLISTALSF 707 (709)
Q Consensus 637 ~LSGGQkQRIaLARALlr~p~ILILDEaTS-aLD~~tE~~I~~~L~~l~~~~~~~~TvIi-IAHRlsti~~~~ 707 (709)
-+|+|+.+|.+++++++.+++++|+|||+. .||.+.-..+.+.+.+..++ .+++++ .||..+.+...+
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~---~~iIl~SAT~~~~~l~~~~ 259 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD---LKIIIMSATLDAEKFQRYF 259 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTT---CEEEEEESCSCCHHHHHHT
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCC---ceEEEEeccccHHHHHHHh
Confidence 478999999999999999999999999997 89987766666666554322 356666 488877665544
No 189
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.32 E-value=2.3e-08 Score=101.22 Aligned_cols=64 Identities=19% Similarity=0.116 Sum_probs=50.7
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC------CHHH----HhcceEEEcccCcccc
Q 005203 522 NISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV------DIKW----LRGRIGFVGQEPKLFR 589 (709)
Q Consensus 522 sl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~------~~~~----lR~~I~~V~Qd~~LF~ 589 (709)
+.+.++|+.++|+|+|||||||++++|.|+ +|+|.++|.|...+ .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 445689999999999999999999999998 79999999886422 1111 2467899999887754
No 190
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.30 E-value=1.5e-06 Score=93.73 Aligned_cols=58 Identities=24% Similarity=0.232 Sum_probs=45.4
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE-EECCEeCCCCCHHHHhcceEEEccc
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI-LIDGFPIKEVDIKWLRGRIGFVGQE 584 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I-~idG~di~~~~~~~lR~~I~~V~Qd 584 (709)
-+++|+.+.|.||+|||||||+..+++...+..|.+ ++|+.+.. +. .+.+++|+.+|+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~ 115 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKS 115 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGG
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhh
Confidence 489999999999999999999999999988888865 77765432 22 355667776654
No 191
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.17 E-value=8.4e-07 Score=94.55 Aligned_cols=132 Identities=17% Similarity=0.238 Sum_probs=74.2
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcC-CCC------CcceEEECCEeCCCCCHHHHhcc---eEEEcccCcccccCHH
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRL-YEP------TNGQILIDGFPIKEVDIKWLRGR---IGFVGQEPKLFRMDIS 593 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl-~~p------~~G~I~idG~di~~~~~~~lR~~---I~~V~Qd~~LF~gTI~ 593 (709)
-+++|+.+.|.||+|||||||+.-++.- ..| ..+.++++...- ++.+.+++. +++-++ .+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~--~~~~~l~~~~~~~g~~~~-------~~~ 173 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT--FRWERIENMAKALGLDID-------NVM 173 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHHHHHHHHHTTCCHH-------HHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHhCCCHH-------HHh
Confidence 5899999999999999999999877753 344 334566654331 223332221 111111 122
Q ss_pred HHhccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhc---cCCCEEEEeCCCCCCCH
Q 005203 594 SNISYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAIL---RDPTILILDEATSALDA 670 (709)
Q Consensus 594 eNI~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALl---r~p~ILILDEaTSaLD~ 670 (709)
+||.+.++ .+.+ -|.|.+..+++++ .+|+++|+|+.|+-.+.
T Consensus 174 ~~l~~~~~--~~~~---------------------------------~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 174 NNIYYIRA--INTD---------------------------------HQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HTEEEEEC--CSHH---------------------------------HHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred ccEEEEeC--CCHH---------------------------------HHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 33333211 1111 1335566667776 56999999999987643
Q ss_pred H-------H--HHHHHHH---HHHhhccCCCCcEEEEEecChh
Q 005203 671 E-------S--EHNIKGV---LRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 671 ~-------t--E~~I~~~---L~~l~~~~~~~~TvIiIAHRls 701 (709)
+ + ...+.+. |+++.++ .++|+|+++|-..
T Consensus 219 ~~~~~g~~~~r~~~~~~~l~~L~~la~~--~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 219 EYPGRENLAVRQQKLNKHLHQLTRLAEV--YDIAVIITNQVMA 259 (324)
T ss_dssp HSCTTTSHHHHHHHHHHHHHHHHHHHHH--HTCEEEEEEEC--
T ss_pred hhcCcccHHHHHHHHHHHHHHHHHHHHH--hCCEEEEEcceee
Confidence 2 1 1234443 4333322 2589999998654
No 192
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.14 E-value=2e-06 Score=92.07 Aligned_cols=125 Identities=17% Similarity=0.242 Sum_probs=79.5
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHh
Q 005203 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNI 596 (709)
Q Consensus 517 vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI 596 (709)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....+.|.+ ++
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~-------------------fS-------------- 81 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV-------------------FS-------------- 81 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE-------------------EE--------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE-------------------Ee--------------
Confidence 455555569999999999999999999998776544322223322 11
Q ss_pred ccCCCCCCCHHHHHHHH--HHHh--hHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 005203 597 SYGCTQDIKQQDIEWAA--KQAY--AHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAES 672 (709)
Q Consensus 597 ~~g~~~~~~~e~i~~aa--~~a~--l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~t 672 (709)
. +.+.+++..=+ ..++ ++... ...||++++||+..|-..+.++++.|.|+|+..+|
T Consensus 82 ----l-Ems~~ql~~Rlls~~~~v~~~~l~------------~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~--- 141 (338)
T 4a1f_A 82 ----L-EMSAEQLALRALSDLTSINMHDLE------------SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE--- 141 (338)
T ss_dssp ----S-SSCHHHHHHHHHHHHHCCCHHHHH------------HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH---
T ss_pred ----C-CCCHHHHHHHHHHHhhCCCHHHHh------------cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH---
Confidence 1 23445544321 1112 11111 13699999999999999999999999999876544
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEe
Q 005203 673 EHNIKGVLRAVRSDTMTRRTVLVIA 697 (709)
Q Consensus 673 E~~I~~~L~~l~~~~~~~~TvIiIA 697 (709)
.|.+.++++.+. .++..+|+|=
T Consensus 142 --~i~~~ir~l~~~-~gg~~lIVID 163 (338)
T 4a1f_A 142 --QIRLQLRKLKSQ-HKELGIAFID 163 (338)
T ss_dssp --HHHHHHHHHHHH-CTTEEEEEEE
T ss_pred --HHHHHHHHHHHh-cCCCCEEEEe
Confidence 444445444322 1147788773
No 193
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.12 E-value=7.6e-07 Score=94.76 Aligned_cols=135 Identities=18% Similarity=0.192 Sum_probs=80.1
Q ss_pred EEEEEcCCCCCCccceeeeEEecCCc------EEEEEcCCCCcHHHHHHHHhcCCC--CCcceEEECCEeCCCCCHHHHh
Q 005203 504 DVSFRYSSREMVPVLQHVNISVNPGE------VVAIAGLSGSGKSTLVNLLLRLYE--PTNGQILIDGFPIKEVDIKWLR 575 (709)
Q Consensus 504 nVsF~Y~~~~~~~vL~~lsl~I~~Ge------~vAIVG~SGsGKSTLlkLLlgl~~--p~~G~I~idG~di~~~~~~~lR 575 (709)
.+++.|.+ ...|++++..+.+++ .+||+|||||||||++++|.+++. |++|+
T Consensus 65 ll~~~~~~---~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~----------------- 124 (321)
T 3tqc_A 65 LLSFYVTA---RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN----------------- 124 (321)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-----------------
T ss_pred HHHHhhcc---hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-----------------
Confidence 44455642 457888888888877 999999999999999999999998 44454
Q ss_pred cceEEEcccCcccccCHHHHh----ccCCCCCCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHH
Q 005203 576 GRIGFVGQEPKLFRMDISSNI----SYGCTQDIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARA 651 (709)
Q Consensus 576 ~~I~~V~Qd~~LF~gTI~eNI----~~g~~~~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARA 651 (709)
+++++||.+.++....+.. .+|.|...+.+.+.+.+ ..+..|-++.. --..|-+..+|+.-+..
T Consensus 125 --v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L---------~~L~~g~~~v~-~P~yd~~~~~r~~~~~~ 192 (321)
T 3tqc_A 125 --VEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVL---------NAIKSGQRNVR-IPVYSHHYYDIVRGQYE 192 (321)
T ss_dssp --EEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHH---------HHHHTTCSSEE-EEEEETTTTEEEEEEEE
T ss_pred --EEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHH---------Hhhhccccccc-cchhhhhccccccCcee
Confidence 4455555555444433321 13334344555444433 33334431110 00123333334332334
Q ss_pred hccCCCEEEEeCCCCCCCH
Q 005203 652 ILRDPTILILDEATSALDA 670 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~ 670 (709)
....|+|+|+|.+-.-.|.
T Consensus 193 ~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 193 IVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp EECSCSEEEEECTTTTCCC
T ss_pred eccCCCEEEEEcccccccc
Confidence 5678999999987766554
No 194
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.11 E-value=6.5e-07 Score=88.48 Aligned_cols=48 Identities=27% Similarity=0.234 Sum_probs=41.8
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCH
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDI 571 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~ 571 (709)
..++|++++|+|+|||||||+++.|.++++|.+|.|.+.+.|....+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 367899999999999999999999999999999999988777655443
No 195
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.10 E-value=3.4e-06 Score=90.96 Aligned_cols=123 Identities=21% Similarity=0.175 Sum_probs=77.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHH
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQD 608 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~ 608 (709)
-++++||++|+|||||++.|+|.. + .+++.+....+ ..++.+.++.. .+.+.|
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~-~-----~~~~~~~~t~~-----~~~~~~~~~~~--------~~~l~D-------- 220 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK-P-----EIASYPFTTRG-----INVGQFEDGYF--------RYQIID-------- 220 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC-C-----EEECCTTCSSC-----EEEEEEEETTE--------EEEEEE--------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-C-----ccCCCCCeeec-----eeEEEEEecCc--------eEEEEe--------
Confidence 479999999999999999999865 2 12222222111 12333333211 111111
Q ss_pred HHHHHHHHhhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhhccC
Q 005203 609 IEWAAKQAYAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILD-EATSALDAESEHNIKGVLRAVRSDT 687 (709)
Q Consensus 609 i~~aa~~a~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILD-EaTSaLD~~tE~~I~~~L~~l~~~~ 687 (709)
.|.-.+. ....+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.....
T Consensus 221 ----------------t~G~~~~--~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-- 279 (357)
T 2e87_A 221 ----------------TPGLLDR--PISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-- 279 (357)
T ss_dssp ----------------CTTTSSS--CSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--
T ss_pred ----------------CCCcccc--chhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--
Confidence 1211111 11257999999887 66666778889999 99999999988888777766432
Q ss_pred CCCcEEEEEe--cChh
Q 005203 688 MTRRTVLVIA--HRLI 701 (709)
Q Consensus 688 ~~~~TvIiIA--HRls 701 (709)
++.+|+|. |++.
T Consensus 280 --~~piilV~NK~Dl~ 293 (357)
T 2e87_A 280 --DLPFLVVINKIDVA 293 (357)
T ss_dssp --TSCEEEEECCTTTC
T ss_pred --CCCEEEEEECcccC
Confidence 37888888 7763
No 196
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.08 E-value=7e-07 Score=85.66 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=40.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhc-ceEEEccc
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRG-RIGFVGQE 584 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~-~I~~V~Qd 584 (709)
++|+.++|+|+|||||||+++.|.+.+ |.+.+|+.++.. ...+++ .+|.+.|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 579999999999999999999999976 899999877653 222222 34555554
No 197
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.02 E-value=3.4e-06 Score=93.07 Aligned_cols=162 Identities=15% Similarity=0.112 Sum_probs=99.2
Q ss_pred EEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHH-Hhcce
Q 005203 500 IDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKW-LRGRI 578 (709)
Q Consensus 500 I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~-lR~~I 578 (709)
+..++++..|++. . ++++++ +|++++++|++||||||++..|++.+.+..|+|.+.+.|.......+ ++..
T Consensus 77 ~v~~~L~~~~~~~--~---~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~- 148 (425)
T 2ffh_A 77 TVYEALKEALGGE--A---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL- 148 (425)
T ss_dssp HHHHHHHHHTTSS--C---CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCC--c---ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-
Confidence 3455677778642 1 678887 89999999999999999999999999999999999988876533221 2110
Q ss_pred EEEcccCcccccCHHHHhccCC-CCCCCHHHHHHHHHHHhhHHHHHcC-CCCcccccCC--CCC---ChHHHHHHHHHHH
Q 005203 579 GFVGQEPKLFRMDISSNISYGC-TQDIKQQDIEWAAKQAYAHDFIMSL-PSGYETLVDD--DLL---SGGQKQRIAIARA 651 (709)
Q Consensus 579 ~~V~Qd~~LF~gTI~eNI~~g~-~~~~~~e~i~~aa~~a~l~d~I~~L-P~GydT~vGe--~~L---SGGQkQRIaLARA 651 (709)
.=..|+-+.. .+..+..++. .+.+..+ ..+||..+=| ..+ .+...+...++++
T Consensus 149 ------------~~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~ 208 (425)
T 2ffh_A 149 ------------GEKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (425)
T ss_dssp ------------HHHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred ------------cccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhc
Confidence 0012333221 1123444442 1222222 2578876655 233 2345677788888
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEec
Q 005203 652 ILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAH 698 (709)
Q Consensus 652 Llr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAH 698 (709)
+.-++-+|++| ++++.|..... +.+..- -+.+-|++++
T Consensus 209 ~~pd~vlLVvD-a~tgq~av~~a---~~f~~~-----l~i~GVIlTK 246 (425)
T 2ffh_A 209 LGPDEVLLVLD-AMTGQEALSVA---RAFDEK-----VGVTGLVLTK 246 (425)
T ss_dssp HCCSEEEEEEE-GGGTTHHHHHH---HHHHHH-----TCCCEEEEES
T ss_pred cCCceEEEEEe-ccchHHHHHHH---HHHHhc-----CCceEEEEeC
Confidence 87777788888 45555544221 222221 1367788875
No 198
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.96 E-value=4.7e-06 Score=87.81 Aligned_cols=146 Identities=18% Similarity=0.166 Sum_probs=80.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE-CCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI-DGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIK 605 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~i-dG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~ 605 (709)
++.++||||++|+|||||++.|+|.. +.+ .+.+-. ..++..+++.|++. .+.+.|.+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~--------~i~~iDTpG~~ 67 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAY--------QAIYVDTPGLH 67 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTE--------EEEEESSSSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCe--------eEEEEECcCCC
Confidence 44589999999999999999999863 222 111111 12345678887754 23444322322
Q ss_pred HHHHHHHHHHHhhHH-HHHcCCCCcc---cc---cCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHHH-HHH
Q 005203 606 QQDIEWAAKQAYAHD-FIMSLPSGYE---TL---VDDDLLSGGQKQRIAIARAIL--RDPTILILDEATSALDAES-EHN 675 (709)
Q Consensus 606 ~e~i~~aa~~a~l~d-~I~~LP~Gyd---T~---vGe~~LSGGQkQRIaLARALl--r~p~ILILDEaTSaLD~~t-E~~ 675 (709)
. +-... +.+ +.......++ .. +....+|+|++ .+++++- +.|.++++ +.+|... ...
T Consensus 68 ~-~~~~~-----l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~ 134 (301)
T 1ega_A 68 M-EEKRA-----INRLMNKAASSSIGDVELVIFVVEGTRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKAD 134 (301)
T ss_dssp H-HHHHH-----HHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHH
T ss_pred c-cchhh-----HHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHH
Confidence 1 11111 122 2222222222 21 11124999986 5667766 67999999 6788776 556
Q ss_pred HHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 676 IKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 676 I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
+.+.+.++.+......++.+.||.-.-+.
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 66777666532111135556677654443
No 199
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.96 E-value=2.6e-06 Score=91.47 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=25.6
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcC
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl 551 (709)
-+++|+.+.|.||+|||||||+.-++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999888764
No 200
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.94 E-value=2.8e-05 Score=83.53 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=32.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
.+|.+++|||+... |.+.-..+.+.+.+...+...+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 877666666666443320001478899999885
No 201
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.90 E-value=4.4e-05 Score=84.30 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=37.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK 567 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~ 567 (709)
++..++++|++|+||||++.-|++.+.+..++|.+-+.|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 57899999999999999999999999999999998777753
No 202
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.87 E-value=1.3e-06 Score=84.16 Aligned_cols=41 Identities=34% Similarity=0.414 Sum_probs=34.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--eEEECCEeCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG--QILIDGFPIK 567 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G--~I~idG~di~ 567 (709)
++|+.++|+|++||||||+++.|.+.+.| .| .|.+||.+++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998876 57 7777776554
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.85 E-value=5.6e-05 Score=78.60 Aligned_cols=32 Identities=31% Similarity=0.410 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 005203 639 SGGQKQRIAIARAILRDPTILILDEATSALDA 670 (709)
Q Consensus 639 SGGQkQRIaLARALlr~p~ILILDEaTSaLD~ 670 (709)
++++++|-.+++|...+|.+|++||+.+-++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 47888888899998899999999999887654
No 204
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.83 E-value=7.6e-05 Score=76.06 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=30.3
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEe
Q 005203 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFP 565 (709)
Q Consensus 517 vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~d 565 (709)
.++++++.+++| +.|+||+|+||||+++.+.+.+... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 456666666666 9999999999999999999877532 35555443
No 205
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.82 E-value=4.6e-06 Score=99.43 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=29.4
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 005203 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP 554 (709)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p 554 (709)
+.+++|+.+.|+||||||||||++.|++.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999999998754
No 206
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.78 E-value=3.3e-06 Score=83.23 Aligned_cols=114 Identities=21% Similarity=0.277 Sum_probs=59.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHH
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDI 609 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i 609 (709)
.++|+|++||||||+.+.|.++ |...+|+ +.+.+.+. + + . .+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~--------d~~~~~~~---~-----------------~-~--~~~~ 47 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA--------DVVAREVV---A-----------------K-D--SPLL 47 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH--------HHHHHHTT---C-----------------S-S--CHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch--------HHHHHHHc---c-----------------C-C--hHHH
Confidence 6899999999999999999993 6555554 22211110 0 1 0 1112
Q ss_pred HHHHHHHhhHHHHHcCCCCcccccCCC-CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCC
Q 005203 610 EWAAKQAYAHDFIMSLPSGYETLVDDD-LLSGGQKQRIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTM 688 (709)
Q Consensus 610 ~~aa~~a~l~d~I~~LP~GydT~vGe~-~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~ 688 (709)
.+..+.- |+. -.++|+.+|-.+++.++.+|+.+-.+ ++.+++...+.+.+.+....
T Consensus 48 ~~i~~~~-----------------g~~~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~---- 104 (206)
T 1jjv_A 48 SKIVEHF-----------------GAQILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQT---- 104 (206)
T ss_dssp HHHHHHH-----------------CTTCC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHh-----------------CHHHhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcC----
Confidence 2221111 221 23688999999999888887644333 22344544444444443321
Q ss_pred CCcEEEEEecChhhh
Q 005203 689 TRRTVLVIAHRLIST 703 (709)
Q Consensus 689 ~~~TvIiIAHRlsti 703 (709)
+.++|+-+|-+...
T Consensus 105 -~~~vv~~~~~l~e~ 118 (206)
T 1jjv_A 105 -APYTLFVVPLLIEN 118 (206)
T ss_dssp -SSEEEEECTTTTTT
T ss_pred -CCEEEEEechhhhc
Confidence 34777777766443
No 207
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.78 E-value=1e-05 Score=86.54 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=27.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTN 556 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~ 556 (709)
++|..+.|+||+|+|||||++.+.+...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999876643
No 208
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.77 E-value=2.2e-05 Score=87.19 Aligned_cols=45 Identities=11% Similarity=0.293 Sum_probs=34.7
Q ss_pred cc-CCCEEEEeCCCCCCCH-HHHHHHHHHHHHhhccCCCCcEEEEEecCh
Q 005203 653 LR-DPTILILDEATSALDA-ESEHNIKGVLRAVRSDTMTRRTVLVIAHRL 700 (709)
Q Consensus 653 lr-~p~ILILDEaTSaLD~-~tE~~I~~~L~~l~~~~~~~~TvIiIAHRl 700 (709)
++ +|++|++||+..-.+. .+...+...+..+... ++++|+.||++
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~---~~~iIitt~~~ 237 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDS---GKQIVICSDRE 237 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTT---TCEEEEEESSC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHC---CCeEEEEECCC
Confidence 45 8999999999887764 5666777787766533 57899999984
No 209
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.76 E-value=4.4e-06 Score=95.28 Aligned_cols=81 Identities=19% Similarity=0.191 Sum_probs=51.9
Q ss_pred EEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEE
Q 005203 502 FVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFV 581 (709)
Q Consensus 502 ~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V 581 (709)
++++..+|.. ..+++++++++ +|+.+.|+||||||||||++.|.+...+..|+|.++|.+-..--....++.+|++
T Consensus 86 ~~~vk~~i~~---~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~ 161 (543)
T 3m6a_A 86 LEKVKERILE---YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM 161 (543)
T ss_dssp CHHHHHHHHH---HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred HHHHHHHHHH---HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC
Confidence 4566666642 45788889888 8999999999999999999999999999999999988543222223445677887
Q ss_pred cccCc
Q 005203 582 GQEPK 586 (709)
Q Consensus 582 ~Qd~~ 586 (709)
+|...
T Consensus 162 ~~~~~ 166 (543)
T 3m6a_A 162 PGRII 166 (543)
T ss_dssp --CHH
T ss_pred chHHH
Confidence 77643
No 210
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.75 E-value=6.9e-06 Score=80.45 Aligned_cols=60 Identities=28% Similarity=0.491 Sum_probs=41.7
Q ss_pred EEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhc----CC----CCCcceEEECCEeCC
Q 005203 505 VSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR----LY----EPTNGQILIDGFPIK 567 (709)
Q Consensus 505 VsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlg----l~----~p~~G~I~idG~di~ 567 (709)
.+|+|++. ..+++++|++.+++ +++++|++|+|||||++.+.+ .| .++.+.+.++|.++.
T Consensus 5 ~~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~ 72 (198)
T 1f6b_A 5 FDWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 72 (198)
T ss_dssp ----------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEE
T ss_pred HHHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEE
Confidence 35778864 57999999998887 689999999999999999987 22 345578888886543
No 211
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.74 E-value=1.3e-05 Score=88.99 Aligned_cols=61 Identities=31% Similarity=0.364 Sum_probs=41.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC------------CCcceEEECCEeCCCCCHHHHhcceEEEcccCcccc
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLYE------------PTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFR 589 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~~------------p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~ 589 (709)
-++||||+||+|||||++.|+|... |.+|.+.++|.++.-+|...+|+..++.+|+...|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 3799999999999999999999853 788999999998876776667777777767766664
No 212
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.73 E-value=1.3e-05 Score=84.87 Aligned_cols=129 Identities=12% Similarity=0.145 Sum_probs=77.0
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHH
Q 005203 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSN 595 (709)
Q Consensus 516 ~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eN 595 (709)
+-|+++.--+++|+.+.|.|++|+|||||+.-++.-.-- .| ++
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------------------------~~ 98 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------------------------DV 98 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------------------------CE
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------------------------Ce
Confidence 457777666999999999999999999998777642110 00 12
Q ss_pred hccCCCCCCCHHHHHHHHHHH--hhHHHHHcCCCCcccccCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 005203 596 ISYGCTQDIKQQDIEWAAKQA--YAHDFIMSLPSGYETLVDDDLLSGGQKQRIAIARAILRDPTILILDEATSALDAESE 673 (709)
Q Consensus 596 I~~g~~~~~~~e~i~~aa~~a--~l~d~I~~LP~GydT~vGe~~LSGGQkQRIaLARALlr~p~ILILDEaTSaLD~~tE 673 (709)
..|+.. +.+.+++.+=+... ++. +..+-.| ...||++++||+..|-..+.++++.+.|+|+..+|
T Consensus 99 vl~~sl-E~s~~~l~~R~~~~~~~i~--~~~l~~~------~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~---- 165 (315)
T 3bh0_A 99 VNLHSL-EMGKKENIKRLIVTAGSIN--AQKIKAA------RRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVN---- 165 (315)
T ss_dssp EEEEES-SSCHHHHHHHHHHHHTTCC--HHHHHSC------HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHH----
T ss_pred EEEEEC-CCCHHHHHHHHHHHHcCCC--HHHHhcC------CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHH----
Confidence 233322 34455554322211 111 0000011 01289999999999999998999999999874432
Q ss_pred HHHHHHHHHhhccCCCCcE--EEEEe
Q 005203 674 HNIKGVLRAVRSDTMTRRT--VLVIA 697 (709)
Q Consensus 674 ~~I~~~L~~l~~~~~~~~T--vIiIA 697 (709)
.+.+.++++.+. .+.. +|+|=
T Consensus 166 -~i~~~i~~l~~~--~~~~~~lVVID 188 (315)
T 3bh0_A 166 -YIWSKTRQTKRK--NPGKRVIVMID 188 (315)
T ss_dssp -HHHHHHHHHHHT--SSSCCEEEEEE
T ss_pred -HHHHHHHHHHHh--cCCCCeEEEEe
Confidence 344444444322 1345 77763
No 213
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=97.69 E-value=2.7e-06 Score=80.75 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=44.1
Q ss_pred ccccccceeeecCcEEEeCCCCCCCCc--ceeechhHHHHHHHHHHHHhcCCCCC
Q 005203 96 CCHFHPLKSSSINGFSVQNDSLEHFDG--EVNVDFNEKIRRWIRFIQSILPGGSW 148 (709)
Q Consensus 96 ~nhfvvl~~v~~~~~~i~dp~~~~a~g--~r~~~~~e~~~~ftg~alel~p~~~f 148 (709)
++|||||.++.++++.|+|| +.| +++++.+|+.+.|+|+++.+.|+.+|
T Consensus 94 ~~hfvVl~~~~~~~v~I~DP----~~g~~~~~ls~~ef~~~w~G~~l~~~p~~~f 144 (156)
T 3k8u_A 94 LQHYYVVYGSQNNQLIIGDP----DPSVKVTRMSKERFQSEWTGLAIFLAPQPNY 144 (156)
T ss_dssp EEEEEEEEEEETTEEEEEEC----STTTEEEEEEHHHHHHHEEEEEEEEEEC---
T ss_pred CcEEEEEEEEcCCEEEEEcC----CCCcceEEEcHHHHHhhCceEEEEEEcCccc
Confidence 57999999999999999999 888 89999999999999999999999977
No 214
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.67 E-value=1.5e-05 Score=75.94 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG 563 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG 563 (709)
.|+.++|+|+|||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 56665
No 215
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.65 E-value=6.1e-06 Score=81.90 Aligned_cols=44 Identities=32% Similarity=0.322 Sum_probs=39.1
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--eEEECCEeC
Q 005203 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG--QILIDGFPI 566 (709)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G--~I~idG~di 566 (709)
+.+++|..++|+|++||||||+++.|.+.+.|+.| .+.+||.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45788999999999999999999999999998889 899986544
No 216
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.65 E-value=5.3e-05 Score=80.06 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPT 555 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~ 555 (709)
++..+.|.||+|+|||||++.+.+...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35689999999999999999999877544
No 217
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.64 E-value=3.7e-06 Score=85.44 Aligned_cols=70 Identities=26% Similarity=0.246 Sum_probs=50.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHh---cCCCCCcceE--------EECCEeCCCCC-HHHHhcceEEEc------ccCcccc
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLL---RLYEPTNGQI--------LIDGFPIKEVD-IKWLRGRIGFVG------QEPKLFR 589 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLl---gl~~p~~G~I--------~idG~di~~~~-~~~lR~~I~~V~------Qd~~LF~ 589 (709)
.-.++|+|||||||||+.+.|. |+.-.+.|.+ .-+|.|..+.. ...+-+.+.++. |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 4589999999999999999998 6666667776 34577766542 456666667766 5566777
Q ss_pred cCHHHHhc
Q 005203 590 MDISSNIS 597 (709)
Q Consensus 590 gTI~eNI~ 597 (709)
..|.+||+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 77776664
No 218
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.64 E-value=0.00032 Score=70.63 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=24.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcce
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYEPTNGQ 558 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~p~~G~ 558 (709)
+|+|+|++|+|||||++.|+|-..+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999977766653
No 219
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.61 E-value=8.3e-06 Score=87.49 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=47.8
Q ss_pred CccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC
Q 005203 515 VPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE 568 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~ 568 (709)
..+++++++++++|.+++|+|++|+|||||++.|++.+.+.+|+|.+-+.|...
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 358889999999999999999999999999999999999888988887776543
No 220
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.60 E-value=1.6e-05 Score=80.49 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=33.3
Q ss_pred ceeeeEEec---CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC
Q 005203 518 LQHVNISVN---PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG 563 (709)
Q Consensus 518 L~~lsl~I~---~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG 563 (709)
|.+.|+.++ +|..++|.|++||||||+++.|...+.+ .+++....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 444555554 8999999999999999999999999988 77776543
No 221
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.56 E-value=1e-05 Score=79.89 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=37.9
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CcceE----------EECCEeCCCCCHHHHhcc
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEP-TNGQI----------LIDGFPIKEVDIKWLRGR 577 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p-~~G~I----------~idG~di~~~~~~~lR~~ 577 (709)
...+|..++|+|||||||||+++.|...++. ..+.+ .+||.+..-++.+.+.+.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~ 72 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK 72 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHH
Confidence 4678999999999999999999999987642 11111 236666655666666543
No 222
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.54 E-value=6.7e-05 Score=77.42 Aligned_cols=48 Identities=25% Similarity=0.339 Sum_probs=39.4
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhh
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
|++|||||..+|++++||||| |.++...+ ++.... |.|+++++|..+.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~~~~----g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRAAET----GHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHHHHT----TCEEEEEECCSSH
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHHHcc----CCEEEEEeCcchH
Confidence 899999999999999999999 98875544 433332 5899999999874
No 223
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.52 E-value=8e-06 Score=74.57 Aligned_cols=47 Identities=6% Similarity=-0.075 Sum_probs=42.7
Q ss_pred ccccccceeeecC--cEEEeCCCCCCC--CcceeechhHHHHHHHHHHHHhcCCC
Q 005203 96 CCHFHPLKSSSIN--GFSVQNDSLEHF--DGEVNVDFNEKIRRWIRFIQSILPGG 146 (709)
Q Consensus 96 ~nhfvvl~~v~~~--~~~i~dp~~~~a--~g~r~~~~~e~~~~ftg~alel~p~~ 146 (709)
.+|||||.++.++ ++.|+|| + .|+++++.+|+.+.|+|+++.++|+.
T Consensus 78 ~~h~vVl~~~~~~~~~~~i~dp----~~~~g~~~~~~~ef~~~w~G~~l~~~~~~ 128 (129)
T 3b79_A 78 GGDSCVLNSINMETREAEVTTL----ESGMVPISIPLEDLLEQYTGRYFLVKKQF 128 (129)
T ss_dssp GGEEEEEEEEETTTTEEEEECT----TTTTSCEEEEHHHHHHHEEEEEEEEEEC-
T ss_pred CCCEEEEEEEcCCCceEEEEcc----CCCCCcEEeeHHHHHhhCCEEEEEEeccC
Confidence 3699999999998 8999999 8 89999999999999999999988863
No 224
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.48 E-value=6.4e-05 Score=75.84 Aligned_cols=122 Identities=17% Similarity=0.232 Sum_probs=68.6
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCccc-ccCHHHHhccCCCC
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLF-RMDISSNISYGCTQ 602 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF-~gTI~eNI~~g~~~ 602 (709)
.+..|+.++++||+||||||++.+.+.-.....|. ...++++.|.|... .-++.+|+.-....
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 34679999999999999999888664322111111 13456677766543 44566666422110
Q ss_pred CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCC---------CCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHH
Q 005203 603 DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD---------LLSGGQKQRIAIARAILRDPTILILDEATS-ALDAES 672 (709)
Q Consensus 603 ~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~---------~LSGGQkQRIaLARALlr~p~ILILDEaTS-aLD~~t 672 (709)
... ..-||....... --+.|+-.+.. ++.+++-+++|+||+-. ++|...
T Consensus 136 ~~~-------------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~ 194 (235)
T 3llm_A 136 EPG-------------------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDF 194 (235)
T ss_dssp CTT-------------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHH
T ss_pred ccC-------------------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHH
Confidence 100 011221111000 12457766664 44689999999999976 477666
Q ss_pred HHHHHHHHHH
Q 005203 673 EHNIKGVLRA 682 (709)
Q Consensus 673 E~~I~~~L~~ 682 (709)
.....+.+.+
T Consensus 195 ~~~~l~~i~~ 204 (235)
T 3llm_A 195 LLVVLRDVVQ 204 (235)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5444444433
No 225
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.46 E-value=5e-06 Score=81.14 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=40.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc------CCCCCcceEEECCE--eCCCCC--------HHHHhcceEEEcccCcccccCHH
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR------LYEPTNGQILIDGF--PIKEVD--------IKWLRGRIGFVGQEPKLFRMDIS 593 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg------l~~p~~G~I~idG~--di~~~~--------~~~lR~~I~~V~Qd~~LF~gTI~ 593 (709)
.++|+|++||||||+.+.|.. +.+|..|...++.. +-...+ .+.+++....+.|+..++++++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999998 34554443222211 000001 01123444567788899999999
Q ss_pred HHhccC
Q 005203 594 SNISYG 599 (709)
Q Consensus 594 eNI~~g 599 (709)
+|+.+.
T Consensus 82 ~~~~~~ 87 (205)
T 2jaq_A 82 EDPIFM 87 (205)
T ss_dssp THHHHH
T ss_pred hhHHHH
Confidence 888764
No 226
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.44 E-value=8.3e-05 Score=72.09 Aligned_cols=51 Identities=25% Similarity=0.453 Sum_probs=30.6
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhc----CCC----CCcceEEECCEeCC
Q 005203 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR----LYE----PTNGQILIDGFPIK 567 (709)
Q Consensus 516 ~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlg----l~~----p~~G~I~idG~di~ 567 (709)
.+++++|++.++. +++++|++|+|||||++.+.+ -+. ++.+++.++|..+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~ 70 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFT 70 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEE
Confidence 3678999988877 889999999999999999997 333 34567777876543
No 227
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.44 E-value=3.1e-05 Score=83.36 Aligned_cols=43 Identities=16% Similarity=0.252 Sum_probs=37.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE 568 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~ 568 (709)
++|..++|+|++|||||||++.|+|.+.|++|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4678999999999999999999999999999999998877654
No 228
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.44 E-value=8.4e-05 Score=70.91 Aligned_cols=27 Identities=41% Similarity=0.466 Sum_probs=23.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
++|.+++|||++|+|||||++.|.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999999864
No 229
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.41 E-value=0.00025 Score=74.36 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=30.7
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEEC
Q 005203 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILID 562 (709)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~id 562 (709)
+.++++..+.|.||+|||||||++.+.+... .+-+.++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 4578899999999999999999999998763 3444443
No 230
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=97.35 E-value=2.2e-05 Score=73.23 Aligned_cols=48 Identities=19% Similarity=0.016 Sum_probs=43.2
Q ss_pred ccccccceeeec--CcEEEeCCCCCCCCc-ceeechhHHHHHHHHHHHHhcCCCCC
Q 005203 96 CCHFHPLKSSSI--NGFSVQNDSLEHFDG-EVNVDFNEKIRRWIRFIQSILPGGSW 148 (709)
Q Consensus 96 ~nhfvvl~~v~~--~~~~i~dp~~~~a~g-~r~~~~~e~~~~ftg~alel~p~~~f 148 (709)
.+||||++ +.+ +++.|+|| +.| +++++.+|+.+.|+|+++.+.|+.+|
T Consensus 86 g~~~Vv~~-~~~~~~~~~I~dP----~~g~~~~~s~~ef~~~w~G~~l~~~~~~~~ 136 (142)
T 3zua_A 86 GRHFILTK-VSKEANRYLIFDL----EQRNPRVLEQSEFEALYQGHIILIASRSSV 136 (142)
T ss_dssp SCCEEEEE-EETTTTEEEEEET----TTTEEEEEEHHHHHHHCCSEEEEEEESSCC
T ss_pred CCEEEEEE-EeCCCCEEEEEcC----CCCCcEEecHHHHHhhCCCEEEEEEECCcc
Confidence 47999865 776 67999999 989 89999999999999999999999877
No 231
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.34 E-value=8.2e-05 Score=73.98 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEP 554 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~~p 554 (709)
++..+.|+||+|+|||||++.+...+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876653
No 232
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.33 E-value=0.00044 Score=74.53 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=33.7
Q ss_pred ccceeeeEE---ecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-cceEEECCE
Q 005203 516 PVLQHVNIS---VNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-NGQILIDGF 564 (709)
Q Consensus 516 ~vL~~lsl~---I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~-~G~I~idG~ 564 (709)
+-|+.+ +. +++|+.+.|.|++|+|||||+.-++.-.... ...+++|..
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 345554 33 8999999999999999999997666443322 335566553
No 233
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.30 E-value=2.5e-05 Score=76.19 Aligned_cols=33 Identities=36% Similarity=0.421 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEe
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFP 565 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~d 565 (709)
...|+|+|++||||||+.+.|... |-..+|.-+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 357999999999999999999986 777776544
No 234
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.28 E-value=1.2e-05 Score=85.90 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=54.4
Q ss_pred CccceeeeEEecCCcE--EEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC-CCHHHHhcceEEEccc
Q 005203 515 VPVLQHVNISVNPGEV--VAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE-VDIKWLRGRIGFVGQE 584 (709)
Q Consensus 515 ~~vL~~lsl~I~~Ge~--vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~-~~~~~lR~~I~~V~Qd 584 (709)
..+++.++..|+.|+. +.+.||+|+||||+++.+++.+.+..|.+.+.+.+..+ .+.+..|+.+..+.|.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~ 103 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAST 103 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHB
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhh
Confidence 4689999999999998 99999999999999999999988877765555555443 3456666666555443
No 235
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.25 E-value=0.00054 Score=70.59 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=24.9
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
++++..+.|.||+|+|||||++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4677889999999999999999998765
No 236
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.23 E-value=4.6e-05 Score=80.21 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=50.8
Q ss_pred EEEEEEEEcCCCCCCcccee-eeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCC
Q 005203 501 DFVDVSFRYSSREMVPVLQH-VNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEV 569 (709)
Q Consensus 501 ~~~nVsF~Y~~~~~~~vL~~-lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~ 569 (709)
..++++..|.+. . ++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...-
T Consensus 76 ~~~~l~~~~~~~--~---~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 76 VYDELSNLFGGD--K---EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHHTTCS--C---CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHHhccc--c---ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 345566666532 1 45 778877 999999999999999999999999999999999988887543
No 237
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.20 E-value=0.00016 Score=76.54 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=24.4
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhc
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlg 550 (709)
-+++|+.+.|.||+|+|||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999977664
No 238
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.20 E-value=0.00027 Score=69.06 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCc
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLYEPTN 556 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~~p~~ 556 (709)
..+.|.||+|+|||||++.+........
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~ 82 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRN 82 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 7899999999999999999998765443
No 239
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=7.7e-05 Score=79.13 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=30.7
Q ss_pred ccceeeeEEecCC--cEEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 516 PVLQHVNISVNPG--EVVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 516 ~vL~~lsl~I~~G--e~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
.+++.+.-.+..| ..+.|.||+|+||||+++.+.+.+.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4566666666666 4599999999999999999998764
No 240
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.14 E-value=0.00019 Score=69.50 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=26.7
Q ss_pred eeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC
Q 005203 520 HVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 520 ~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl 551 (709)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46888999999999999999999999999875
No 241
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.12 E-value=0.00013 Score=70.56 Aligned_cols=40 Identities=35% Similarity=0.610 Sum_probs=34.1
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE-EECC
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI-LIDG 563 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I-~idG 563 (709)
..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 356899999999999999999999999998877776 4554
No 242
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.12 E-value=0.00032 Score=73.08 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI 559 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I 559 (709)
...+.|+||+|+||||+++.+.+...+.+|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35799999999999999999999988776643
No 243
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.12 E-value=0.00048 Score=73.64 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=31.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEe
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFP 565 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~d 565 (709)
.+|..+.|.||+|+||||+++.+.........-+.+++..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 4577899999999999999999998876544455555433
No 244
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.09 E-value=0.00039 Score=77.08 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=31.0
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 516 ~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
+-|+.+.--+++|+.+.|.|++|+|||||+.-++.-..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34666665699999999999999999999987776544
No 245
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.08 E-value=9.2e-05 Score=72.99 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=30.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhh
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
.+|.++++||+-. +|.+....+.+.+.+.. .+..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~----~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPP----EHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCC----TTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCC----CceEEEEEeCChHh
Confidence 4688999999865 77777667766665432 24677888887654
No 246
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.05 E-value=0.00068 Score=69.00 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHhc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhh
Q 005203 639 SGGQKQRIAIARAIL---RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 639 SGGQkQRIaLARALl---r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
+.|++.+-.+.|+++ ++|+++++--..+.++.+ +..+.+.+.+.......++++|+++|.-..
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 445666666777774 788877665444455543 445555665542111113789999987543
No 247
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.05 E-value=5.3e-05 Score=81.86 Aligned_cols=59 Identities=24% Similarity=0.236 Sum_probs=37.4
Q ss_pred CCcEEEEEEEEEcCCCCCCccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCE
Q 005203 497 MGRIDFVDVSFRYSSREMVPVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGF 564 (709)
Q Consensus 497 ~~~I~~~nVsF~Y~~~~~~~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~ 564 (709)
.+.|.++|++..|.. ..++++++|+| +|||++|+|||||++.|.|...+..|.+..++.
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~ 73 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAAE 73 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCc
Confidence 456899999998863 46889999977 999999999999999999887666665544443
No 248
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.00 E-value=0.00058 Score=64.28 Aligned_cols=25 Identities=32% Similarity=0.294 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
-+++|+|++|+|||||++.+.|...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe
Confidence 3799999999999999999998654
No 249
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.99 E-value=0.00016 Score=70.86 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeC
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPI 566 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di 566 (709)
...++|+|+|||||||+++.|.+.+ |.+.+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 5689999999999999999998876 5566665443
No 250
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.99 E-value=0.00017 Score=73.75 Aligned_cols=42 Identities=24% Similarity=0.462 Sum_probs=34.4
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCC
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIK 567 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~ 567 (709)
..++|..+.|+|++||||||+.+.|.+.+. .|.+.+||-.++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 466788999999999999999999998775 356788875543
No 251
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.98 E-value=0.0033 Score=63.53 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=23.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
++...+.|.||+|+||||+++.+...+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445668999999999999999998754
No 252
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.96 E-value=0.00043 Score=65.02 Aligned_cols=29 Identities=34% Similarity=0.612 Sum_probs=23.6
Q ss_pred eeeEEecCCcEEEEEcCCCCcHHHHHHHHh
Q 005203 520 HVNISVNPGEVVAIAGLSGSGKSTLVNLLL 549 (709)
Q Consensus 520 ~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLl 549 (709)
+.++++.+| ..+|+||+||||||++..|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 345555554 89999999999999999886
No 253
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.96 E-value=0.0002 Score=70.07 Aligned_cols=74 Identities=30% Similarity=0.469 Sum_probs=50.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC-------------CCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhc
Q 005203 531 VAIAGLSGSGKSTLVNLLLRLY-------------EPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNIS 597 (709)
Q Consensus 531 vAIVG~SGsGKSTLlkLLlgl~-------------~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~ 597 (709)
+.|+||||||||||++-|+.-+ +|-.|++ ||+|..-++.+.+.+.+ .++.++-.+.+..| .
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~i---~~g~flE~~~~~g~-~ 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGN-Y 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETTE-E
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHHH---HcCCEEEEEEEcCc-e
Confidence 7899999999999998876432 4566764 89998888888887653 45666666665555 4
Q ss_pred cCCCCCCCHHHHHHHHH
Q 005203 598 YGCTQDIKQQDIEWAAK 614 (709)
Q Consensus 598 ~g~~~~~~~e~i~~aa~ 614 (709)
||-+ .+.+.++++
T Consensus 78 YGt~----~~~v~~~l~ 90 (186)
T 1ex7_A 78 YGST----VASVKQVSK 90 (186)
T ss_dssp EEEE----HHHHHHHHH
T ss_pred eeee----cceeeehhh
Confidence 5522 455555443
No 254
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.95 E-value=0.00043 Score=66.15 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++.++|-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999984
No 255
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.95 E-value=0.00029 Score=68.17 Aligned_cols=39 Identities=28% Similarity=0.332 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCC---cceEEECCEeC
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRLYEPT---NGQILIDGFPI 566 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl~~p~---~G~I~idG~di 566 (709)
-..++|+|+||||||||++.|++.+.+. -|.|..++.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~ 47 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 47 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcc
Confidence 3579999999999999999999886554 37888877553
No 256
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.94 E-value=0.00037 Score=75.98 Aligned_cols=41 Identities=24% Similarity=0.406 Sum_probs=35.3
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcC-----------CCCCcceEEECCE
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRL-----------YEPTNGQILIDGF 564 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl-----------~~p~~G~I~idG~ 564 (709)
.+..|.+++|||++|+|||||++.|.|. .+|+.|.|.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 5678999999999999999999999998 7888999888764
No 257
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.90 E-value=0.00071 Score=75.20 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChhh
Q 005203 640 GGQKQRIAIARAILRDPTILILDEATS-ALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 640 GGQkQRIaLARALlr~p~ILILDEaTS-aLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
+.|++-...++..+++++++|+..... .+... ...+.+.+++. ++.+|+|.++...
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~~------~~pvilV~NK~D~ 143 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYRT------KKPVVLAVNKLDN 143 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTTC------CSCEEEEEECC--
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHHc------CCCEEEEEECccc
Confidence 458888889999999999888765444 44444 44566666432 4788888887654
No 258
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.89 E-value=0.0027 Score=68.16 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=24.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
++...+.|.||+|+|||||++.+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 467789999999999999999998754
No 259
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.89 E-value=0.0004 Score=74.18 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=25.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEP 554 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p 554 (709)
..+..+.|.||+|+||||+++.+......
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56778999999999999999999876643
No 260
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.85 E-value=0.0005 Score=65.94 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYEPT 555 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~p~ 555 (709)
+++|+|+||+|||||++.+.|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 69999999999999999999975443
No 261
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.83 E-value=0.00057 Score=66.80 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 262
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.82 E-value=0.0027 Score=60.11 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEEC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILID 562 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~id 562 (709)
..+.|+|++||||||+.+.|... .-|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 36899999999999999999872 12555554
No 263
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.82 E-value=0.0024 Score=59.18 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=26.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG 557 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G 557 (709)
+.+.-+-|.||+|+|||++++.+........+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 45667999999999999999999887654333
No 264
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.78 E-value=0.004 Score=67.25 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.6
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhc
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlg 550 (709)
-+++|+.+.|.||+|+|||||+.-++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 479999999999999999999965553
No 265
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.73 E-value=0.0013 Score=63.31 Aligned_cols=37 Identities=38% Similarity=0.513 Sum_probs=29.7
Q ss_pred EEEEEcCCCCcHHHHHHHH-hcC----CCCCcc----eEEECCEeC
Q 005203 530 VVAIAGLSGSGKSTLVNLL-LRL----YEPTNG----QILIDGFPI 566 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLL-lgl----~~p~~G----~I~idG~di 566 (709)
+++|+|++|+|||||++-+ .+- +.|+.| .+.++|..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 6999999999999999654 454 778877 778888553
No 266
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.69 E-value=0.00069 Score=73.59 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=39.0
Q ss_pred cCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhhccCCCCcEEEEEecChhhhh
Q 005203 654 RDPTILILDEATSALD---AESEHNIKGVLRAVRSDTMTRRTVLVIAHRLISTA 704 (709)
Q Consensus 654 r~p~ILILDEaTSaLD---~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlsti~ 704 (709)
.+|.++++||+=.-++ +.....+.+.+++.++- |..++++||+++.+.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~---g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKY---NGSLIVISQNVIDFL 311 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGG---TCEEEEEESCGGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhh---CeEEEEEcCCHHHhh
Confidence 3589999999988885 55667788888877764 689999999998765
No 267
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.65 E-value=0.00029 Score=69.22 Aligned_cols=87 Identities=23% Similarity=0.330 Sum_probs=51.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCc----ccccCHHHHhc--cCC-CC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPK----LFRMDISSNIS--YGC-TQ 602 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~----LF~gTI~eNI~--~g~-~~ 602 (709)
.++|+|+|||||||+++.|.+.+.+....+.+ +. +|. ++..++++.+. ++. +.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~-------------------~~-~~~~~~~~~~~~~r~~~~~~~~~~~~ 61 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT-------------------LA-FPRYGQSVAADIAAEALHGEHGDLAS 61 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE-------------------EE-SSEEEEEEEEEEHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE-------------------Ee-ecCCCCcchhhHHHHHHcccccccCC
Confidence 68999999999999999999988754333321 11 111 12334554442 110 10
Q ss_pred CCCHHHHHHHHHHHhhHHHHHcCCCCcccccCCC
Q 005203 603 DIKQQDIEWAAKQAYAHDFIMSLPSGYETLVDDD 636 (709)
Q Consensus 603 ~~~~e~i~~aa~~a~l~d~I~~LP~GydT~vGe~ 636 (709)
+...+.+..++..++..+.|..++.+.++.|.|.
T Consensus 62 ~~~~~~~~~~~~r~~~~~~i~~~l~~g~~vi~D~ 95 (214)
T 1gtv_A 62 SVYAMATLFALDRAGAVHTIQGLCRGYDVVILDR 95 (214)
T ss_dssp EHHHHHHHHHHHHHEEHHHHHHEEEEEEEEEEEE
T ss_pred CHhHHHHHHHHHHhhhHHHHHHHhhCCCEEEECC
Confidence 1223444444555554677877776778888774
No 268
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.62 E-value=0.01 Score=62.69 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=24.7
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
..+...+.|.||+|+|||||++.+.+..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4566789999999999999999999865
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.61 E-value=0.0011 Score=63.12 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
.|..+.|+|+|||||||+.+.|..-+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999997664
No 270
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.59 E-value=0.00038 Score=74.70 Aligned_cols=37 Identities=32% Similarity=0.436 Sum_probs=33.8
Q ss_pred ccceeeeEEecCCcE--EEEEcCCCCcHHHHHHHHhcCC
Q 005203 516 PVLQHVNISVNPGEV--VAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 516 ~vL~~lsl~I~~Ge~--vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.+++.+++.+++|+. ++|+|++||||||+.+.|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478889999999998 9999999999999999998864
No 271
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.55 E-value=0.00099 Score=63.89 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998544
No 272
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.53 E-value=0.00054 Score=74.16 Aligned_cols=59 Identities=24% Similarity=0.275 Sum_probs=42.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcceEEEcccCcccccCHHHHhccCCCCCCCHHHH
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRIGFVGQEPKLFRMDISSNISYGCTQDIKQQDI 609 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I~~V~Qd~~LF~gTI~eNI~~g~~~~~~~e~i 609 (709)
+++|||++|+|||||++.|.|.. + ++.+++.. |+..|+... ..+++++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~~------------------Ti~pn~g~~---~v~~~~l 50 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPFA------------------TIDKNVGVV---PLEDERL 50 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCGG------------------GGSTTEEEE---ECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCCc------------------eeccceeeE---ecChHHH
Confidence 48999999999999999999874 3 22222222 677777665 3456788
Q ss_pred HHHHHHHhhHH
Q 005203 610 EWAAKQAYAHD 620 (709)
Q Consensus 610 ~~aa~~a~l~d 620 (709)
..+++.++.++
T Consensus 51 ~~~~~~~~~~~ 61 (368)
T 2dby_A 51 YALQRTFAKGE 61 (368)
T ss_dssp HHHHHHHCBTT
T ss_pred HHHHHHhcccc
Confidence 88888887654
No 273
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.49 E-value=0.0013 Score=61.88 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
.++|+|++||||||+.+.|...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999986653
No 274
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.45 E-value=0.0014 Score=62.77 Aligned_cols=38 Identities=32% Similarity=0.562 Sum_probs=30.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC----CCCCcc----eEEECCEeC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRL----YEPTNG----QILIDGFPI 566 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl----~~p~~G----~I~idG~di 566 (709)
=+++++|++|+|||||++.+.+- +.|+.| .+.+++..+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l 62 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKL 62 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEE
Confidence 47999999999999999999976 467777 566665543
No 275
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.43 E-value=0.0035 Score=66.38 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=25.0
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhc
Q 005203 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlg 550 (709)
--+++|..+.|.||+|+|||||+.-++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999988874
No 276
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.41 E-value=0.0014 Score=69.14 Aligned_cols=47 Identities=34% Similarity=0.282 Sum_probs=36.1
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhc----CCCCCcceEEECC
Q 005203 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR----LYEPTNGQILIDG 563 (709)
Q Consensus 516 ~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlg----l~~p~~G~I~idG 563 (709)
..+++..+++ .|.-++|+|+||+||||++..|.+ +...+...|...|
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 4677878888 799999999999999999998886 4444444554433
No 277
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.39 E-value=0.0017 Score=62.20 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
+|..++|+|++||||||+.+.|..-+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999987553
No 278
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.39 E-value=0.0017 Score=62.25 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999997654
No 279
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.38 E-value=0.0059 Score=59.09 Aligned_cols=43 Identities=19% Similarity=0.286 Sum_probs=28.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 654 RDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 654 r~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
.++.++++||+- .++.+....+.+.++.... +..+|+++.++.
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~----~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSK----SCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTT----TEEEEEEESCGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCC----CCeEEEEeCChh
Confidence 368999999974 4677766777777765432 355666666654
No 280
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.37 E-value=0.0019 Score=63.78 Aligned_cols=32 Identities=44% Similarity=0.541 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG 563 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG 563 (709)
.+-.++|+|++||||||+.+.|..+ |...+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3568999999999999999999982 5555654
No 281
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.33 E-value=0.0018 Score=65.08 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=27.2
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhc---CCCCCcceE
Q 005203 525 VNPGEVVAIAGLSGSGKSTLVNLLLR---LYEPTNGQI 559 (709)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlg---l~~p~~G~I 559 (709)
=++|.+++|+|++||||||+.+.|.+ +.-++.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~ 50 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 50 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence 46789999999999999999999986 333444444
No 282
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.33 E-value=0.0063 Score=63.42 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=22.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
++-..+.+.||+|+|||+|++.++.-+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334568889999999999999999766
No 283
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.33 E-value=0.0021 Score=63.46 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=23.1
Q ss_pred eeeEEecCCcEEEEEcCCCCcHHHHHHHHh
Q 005203 520 HVNISVNPGEVVAIAGLSGSGKSTLVNLLL 549 (709)
Q Consensus 520 ~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLl 549 (709)
+.++++.+ ...+|+||+||||||++..|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34555555 489999999999999999774
No 284
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.31 E-value=0.0022 Score=62.32 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999877
No 285
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.31 E-value=0.0018 Score=62.19 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
++|..+.|+|++||||||+.+.|..-+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 567899999999999999999998654
No 286
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.28 E-value=0.002 Score=67.11 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=28.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDG 563 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG 563 (709)
+.|..+.|+|||||||||+.+.|..-++ .|.+.|++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3467899999999999999999987553 36677765
No 287
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.22 E-value=0.0015 Score=62.51 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.++..+.|+|+|||||||+.+.|..-+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 567889999999999999999998544
No 288
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.21 E-value=0.0015 Score=62.89 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCc---ceEEECCE
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLYEPTN---GQILIDGF 564 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~~p~~---G~I~idG~ 564 (709)
..++|+|+||||||||++-|++.+.+.. |.|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4789999999999999999988775442 45554543
No 289
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.20 E-value=0.0022 Score=60.02 Aligned_cols=19 Identities=53% Similarity=0.899 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 005203 530 VVAIAGLSGSGKSTLVNLL 548 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLL 548 (709)
.++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 290
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.17 E-value=0.0074 Score=61.73 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl 551 (709)
++...+.|+||+|+||||+++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45568999999999999999999875
No 291
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.13 E-value=0.0038 Score=67.28 Aligned_cols=36 Identities=39% Similarity=0.562 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc-----------CCCCCcceEEECC
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLR-----------LYEPTNGQILIDG 563 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlg-----------l~~p~~G~I~idG 563 (709)
|-+++|||.+|+|||||++.|.| -.+|+.|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4578889888776
No 292
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.12 E-value=0.0029 Score=60.94 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=24.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
++|..++|+|++||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999998655
No 293
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.10 E-value=0.027 Score=62.16 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI 561 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~i 561 (709)
++..++++|++|+||||++.-|+..+.....+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46789999999999999999998888765556655
No 294
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.10 E-value=0.003 Score=61.72 Aligned_cols=28 Identities=36% Similarity=0.546 Sum_probs=24.5
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.++|..++|+|++||||||+.+.|...+
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999998644
No 295
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.05 E-value=0.0032 Score=61.34 Aligned_cols=32 Identities=34% Similarity=0.544 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI 559 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I 559 (709)
+|..++|.|++||||||+.+.|..-+... |.+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~ 34 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELK-RDV 34 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTT-SCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhc-CCE
Confidence 57789999999999999999998866543 344
No 296
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.03 E-value=0.0033 Score=61.48 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=24.2
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.++|..++|+|++||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999998643
No 297
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.96 E-value=0.0098 Score=63.75 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=24.1
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.+++.-+.|.||+|+|||||++.+...+
T Consensus 81 ~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 81 RKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 3556679999999999999999999765
No 298
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.94 E-value=0.042 Score=56.83 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
++..+.|+||+|+||||+++.+...+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999887765
No 299
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.94 E-value=0.0091 Score=55.13 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
+.+.-+.|.||+|+|||++++.+.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 4566799999999999999999877543
No 300
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.89 E-value=0.0073 Score=56.60 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++-+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999998865
No 301
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.88 E-value=0.0036 Score=59.56 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.++|+|++||||||+.+.|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998755
No 302
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.87 E-value=0.0036 Score=60.72 Aligned_cols=36 Identities=36% Similarity=0.457 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-----CC------cceEEECCEe
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYE-----PT------NGQILIDGFP 565 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~-----p~------~G~I~idG~d 565 (709)
+|++||++|+|||||++-+.|... |+ .+.+.+||.+
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEE 71 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEE
Confidence 799999999999999999976432 22 2456677754
No 303
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.86 E-value=0.0081 Score=56.32 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl 551 (709)
++.-+|+++|++|+|||||++-+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35568999999999999999999863
No 304
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.82 E-value=0.0043 Score=59.37 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
.++|.|++||||||+.+.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987664
No 305
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.81 E-value=0.0072 Score=56.42 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+++++|++|+|||||++-+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998764
No 306
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.80 E-value=0.0037 Score=60.30 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=25.3
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.++++..++|+|++||||||+.+.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34667899999999999999999998765
No 307
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.80 E-value=0.019 Score=72.89 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=32.1
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceE-EECCE
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQI-LIDGF 564 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I-~idG~ 564 (709)
-+++|+.+.|.||+|+|||||+.-++.......|.+ ++++.
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~E 769 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 769 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEecc
Confidence 399999999999999999999988877665444444 44543
No 308
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.78 E-value=0.016 Score=61.29 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=27.7
Q ss_pred ecCCcEEEEEcCCCCcHHHHH-HHHhcCCCC--CcceEEECCE
Q 005203 525 VNPGEVVAIAGLSGSGKSTLV-NLLLRLYEP--TNGQILIDGF 564 (709)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLl-kLLlgl~~p--~~G~I~idG~ 564 (709)
+++| .+-|.||+|+|||||+ .++...... ..-.++||+.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 7899 9999999999999995 444444432 2335566654
No 309
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.77 E-value=0.0041 Score=63.42 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.++|+||+|||||||.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 310
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.74 E-value=0.0083 Score=55.60 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+++++|++|+|||||++-+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 311
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.72 E-value=0.026 Score=62.35 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=24.8
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
..+...+.|.||+|+|||||++.+....
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 3567889999999999999999999865
No 312
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.70 E-value=0.0053 Score=68.01 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=26.8
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhc
Q 005203 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 517 vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlg 550 (709)
-|+.+.--+++|+.+.|.|++|+||||++.-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3444443589999999999999999999865553
No 313
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.69 E-value=1.2 Score=50.61 Aligned_cols=10 Identities=30% Similarity=0.574 Sum_probs=5.0
Q ss_pred ceeeeEEecC
Q 005203 518 LQHVNISVNP 527 (709)
Q Consensus 518 L~~lsl~I~~ 527 (709)
++|++++-+.
T Consensus 342 ~~~v~~~y~~ 351 (578)
T 4a82_A 342 IDHVSFQYND 351 (578)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEEEcCC
Confidence 4555555443
No 314
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.68 E-value=0.0039 Score=59.35 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=18.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.++..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 457789999999999999999998544
No 315
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.67 E-value=0.0054 Score=58.70 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
++..|+|+|++||||||+.+.|..-+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999987644
No 316
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.62 E-value=0.037 Score=60.58 Aligned_cols=28 Identities=36% Similarity=0.423 Sum_probs=24.0
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
=++.+.+.|+|+|||||||+.+.|+.-+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3567899999999999999999987644
No 317
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.61 E-value=0.0058 Score=58.84 Aligned_cols=24 Identities=42% Similarity=0.724 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
.++|.|++||||||+.+.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987663
No 318
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.60 E-value=0.0056 Score=59.48 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.++|+|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 319
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.57 E-value=0.04 Score=59.54 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.++..+.|.||+|+|||||++.++...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 357899999999999999999998663
No 320
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.011 Score=57.71 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+++++|++|+|||||++-+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 799999999999999997764
No 321
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.55 E-value=0.012 Score=56.29 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+|+|+|++|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999999887
No 322
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.54 E-value=0.0062 Score=59.86 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+++|+|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996544
No 323
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.52 E-value=0.0073 Score=59.72 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
++|-.+.|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 357789999999999999999998755
No 324
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.51 E-value=4.5 Score=45.97 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=5.4
Q ss_pred EEEEEEEcCC
Q 005203 502 FVDVSFRYSS 511 (709)
Q Consensus 502 ~~nVsF~Y~~ 511 (709)
++|+||+-+.
T Consensus 359 l~~isl~i~~ 368 (587)
T 3qf4_A 359 LSGVNFSVKP 368 (587)
T ss_dssp EEEEEEEECT
T ss_pred eeceEEEEcC
Confidence 5555555543
No 325
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.49 E-value=0.0072 Score=56.92 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
-+.++|+|++||||||+.+.|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999997644
No 326
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.48 E-value=0.0096 Score=55.15 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999988654
No 327
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.48 E-value=0.0074 Score=61.70 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+++++|++|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999874
No 328
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.47 E-value=0.0069 Score=56.04 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++-+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998863
No 329
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.46 E-value=0.0063 Score=56.37 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
+++++|++|+|||||++.+.|-..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 689999999999999999987543
No 330
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.46 E-value=0.019 Score=64.33 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=24.5
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+++...+.|.||+|+|||++++.+....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 5667789999999999999999998754
No 331
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.46 E-value=0.004 Score=65.04 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=19.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
++-.|+|.|+|||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 332
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.45 E-value=0.0073 Score=60.07 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=22.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.++..+.|+|++||||||+.+.|..-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998644
No 333
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.42 E-value=0.0076 Score=56.53 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998644
No 334
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.42 E-value=0.0084 Score=58.33 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.+-.++|+|++||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998655
No 335
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.41 E-value=0.014 Score=55.27 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=28.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcC----CCCCcc----eEEECCEe
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRL----YEPTNG----QILIDGFP 565 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl----~~p~~G----~I~idG~d 565 (709)
++.=+++++|++|+|||||++-+.+- +.|+-| .+.+++..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 63 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFK 63 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEE
Confidence 34458999999999999999999863 445544 34445443
No 336
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.40 E-value=0.0067 Score=57.13 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
..++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998654
No 337
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.39 E-value=0.0075 Score=59.33 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+++|+|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999997554
No 338
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.38 E-value=0.0065 Score=58.10 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
..++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999997654
No 339
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.38 E-value=0.0069 Score=59.99 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998654
No 340
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.37 E-value=0.0074 Score=61.94 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
+++++|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999754
No 341
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.36 E-value=0.0084 Score=58.29 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
....|+|+|++||||||+.+.|..-+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998654
No 342
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.0078 Score=57.51 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
=+++++|++|+|||||++.+.+-..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4899999999999999999987653
No 343
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.35 E-value=0.0081 Score=55.29 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+++++|++|+|||||++-+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999988874
No 344
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.35 E-value=0.0088 Score=55.56 Aligned_cols=23 Identities=43% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999998644
No 345
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.33 E-value=0.0079 Score=55.19 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++-+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998764
No 346
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.32 E-value=0.0083 Score=57.44 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 347
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.32 E-value=0.038 Score=57.49 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
++..+.|+||+|+||||+++.+....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 44679999999999999999997643
No 348
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.31 E-value=0.023 Score=61.86 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=24.9
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
-++|-.-+-+.||+|||||+|++.+++-..
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 355556699999999999999999998653
No 349
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.30 E-value=0.0085 Score=55.21 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++-+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998853
No 350
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.30 E-value=0.015 Score=56.21 Aligned_cols=35 Identities=34% Similarity=0.410 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCcc------eEEECCE
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL-----YEPTNG------QILIDGF 564 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl-----~~p~~G------~I~idG~ 564 (709)
+|+++|++|+|||||++-+.+- +.|+.| .+.++|.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~ 55 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK 55 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCE
Confidence 6899999999999999999863 344444 4566664
No 351
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.28 E-value=0.0088 Score=54.96 Aligned_cols=23 Identities=43% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+++++|++|+|||||++-+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 352
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.28 E-value=0.011 Score=56.30 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+|+++|++|+|||||++-|++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999875
No 353
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.28 E-value=0.046 Score=57.13 Aligned_cols=43 Identities=19% Similarity=0.394 Sum_probs=29.5
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHhhccCCCCcEEEEEecChhh
Q 005203 655 DPTILILDEATSALD-AESEHNIKGVLRAVRSDTMTRRTVLVIAHRLIS 702 (709)
Q Consensus 655 ~p~ILILDEaTSaLD-~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRlst 702 (709)
+++++++||+-. |. .+....+.+.++.... +..+|+++.++..
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~----~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSS----NCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGG----GCEEEEEESSGGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCC----CcEEEEEeCCccc
Confidence 789999999854 44 5566667777766543 2677777777653
No 354
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.26 E-value=0.0087 Score=57.13 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+..++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999997654
No 355
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.25 E-value=0.0091 Score=55.42 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++-+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998854
No 356
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.25 E-value=0.0087 Score=55.46 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++-+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998854
No 357
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.24 E-value=0.0091 Score=58.44 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
-.++|+|.+||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998753
No 358
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.24 E-value=0.0087 Score=60.68 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.|+|+|++||||||+.+.|...+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999997643
No 359
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.23 E-value=0.0092 Score=55.12 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999885
No 360
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.22 E-value=0.014 Score=55.55 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCcce
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL-----YEPTNGQ 558 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl-----~~p~~G~ 558 (709)
+++++|++|+|||||++-+.+- |.|+.|.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~ 42 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE 42 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccce
Confidence 6899999999999999998864 4565553
No 361
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.21 E-value=0.0094 Score=55.90 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++-+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999888764
No 362
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.20 E-value=0.0092 Score=56.79 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYEP 554 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~p 554 (709)
+++++|++|+|||||++.+.|-+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987653
No 363
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.20 E-value=0.0095 Score=55.10 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++-+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988753
No 364
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.20 E-value=0.0095 Score=55.77 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++-+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998753
No 365
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.14 E-value=0.011 Score=59.93 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
++-.++|.|++||||||+.+.|..-|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998654
No 366
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.14 E-value=0.029 Score=59.56 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=26.9
Q ss_pred eeeeEEecCCc---EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 005203 519 QHVNISVNPGE---VVAIAGLSGSGKSTLVNLLLRLYEPT 555 (709)
Q Consensus 519 ~~lsl~I~~Ge---~vAIVG~SGsGKSTLlkLLlgl~~p~ 555 (709)
+.+.-.++.|+ .+.|.||+|+||||+++.+.......
T Consensus 26 ~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 26 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp HHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 33333344444 48999999999999999998766543
No 367
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.13 E-value=0.0097 Score=55.74 Aligned_cols=22 Identities=36% Similarity=0.366 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 368
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.12 E-value=0.0089 Score=61.46 Aligned_cols=23 Identities=43% Similarity=0.548 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
++++||++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999987643
No 369
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.11 E-value=0.014 Score=62.09 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=24.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
+++..+.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999997764
No 370
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.10 E-value=0.0098 Score=56.55 Aligned_cols=23 Identities=43% Similarity=0.507 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+++++|++|+|||||++-+++-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999998764
No 371
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.08 E-value=0.0099 Score=56.79 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl 551 (709)
-=+++++|++|+|||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999875
No 372
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.07 E-value=0.0039 Score=67.09 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=45.5
Q ss_pred CCChHHHHHHHHHHHhc-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecC
Q 005203 637 LLSGGQKQRIAIARAIL-RDPTILILDE---AT------SALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHR 699 (709)
Q Consensus 637 ~LSGGQkQRIaLARALl-r~p~ILILDE---aT------SaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHR 699 (709)
.+|+|++||..+++++. .+|++++||| |+ +++|......+.+.|+++.++ .+.|+|+++|-
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~--~~~~ililde~ 328 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDK--YKVPYIEIESP 328 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHG--GGCCCEEEECS
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHH--cCCCEEEeCCC
Confidence 46788889999999885 5999999999 54 689999999999999765431 13799999975
No 373
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.07 E-value=0.11 Score=57.14 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=25.3
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
-+++-.-+-+.||+|||||+|++.+++-.
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45667779999999999999999999865
No 374
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.05 E-value=0.011 Score=54.60 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+++++|++|+|||||++-+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999885
No 375
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.00 E-value=0.012 Score=55.70 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999854
No 376
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.99 E-value=0.012 Score=60.06 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=23.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+++..|.|+|++||||||+.+.|...+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998753
No 377
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.99 E-value=0.012 Score=55.84 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+|+|+|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999985
No 378
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.97 E-value=0.012 Score=54.31 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+++++|++|+|||||++-+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998874
No 379
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.97 E-value=0.015 Score=60.06 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+++++|++|||||||++.|.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999964
No 380
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.96 E-value=0.011 Score=55.93 Aligned_cols=23 Identities=39% Similarity=0.395 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+++++|++|+|||||++-+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998753
No 381
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=94.96 E-value=0.11 Score=58.94 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=30.9
Q ss_pred eeEEecCCcEEEEEcCCCCcHHHHHHHHhc----CCCCCcceEE
Q 005203 521 VNISVNPGEVVAIAGLSGSGKSTLVNLLLR----LYEPTNGQIL 560 (709)
Q Consensus 521 lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlg----l~~p~~G~I~ 560 (709)
+.+++.++-.+.|.|.+|||||++++.|.. -+.|.+-++.
T Consensus 207 v~~DL~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~li 250 (574)
T 2iut_A 207 IITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLI 250 (574)
T ss_dssp EEEEGGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEE
T ss_pred EEEEhhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEE
Confidence 556677889999999999999999987543 4567665554
No 382
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.95 E-value=0.013 Score=54.80 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++-+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999998854
No 383
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.93 E-value=0.012 Score=54.97 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+++++|++|+|||||++-+++
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999885
No 384
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.91 E-value=0.013 Score=60.80 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlg 550 (709)
.-.|+|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999984
No 385
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.89 E-value=0.013 Score=54.37 Aligned_cols=30 Identities=37% Similarity=0.432 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC----CCCCcc
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRL----YEPTNG 557 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl----~~p~~G 557 (709)
.=+++++|++|+|||||++-+.+- +.|+-|
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~ 40 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIG 40 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCc
Confidence 347999999999999999998752 445555
No 386
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.88 E-value=0.013 Score=55.00 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++-+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999988753
No 387
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.88 E-value=0.021 Score=53.71 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-----CCCCCcc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR-----LYEPTNG 557 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg-----l~~p~~G 557 (709)
+++++|++|+|||||++-+.+ -+.|+.|
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~ 40 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCCcc
Confidence 689999999999999998883 3455555
No 388
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.87 E-value=0.021 Score=54.61 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+|+++|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 799999999999999999986
No 389
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.86 E-value=0.056 Score=59.58 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=26.2
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
-++|-.-+-+.||+|||||+|++.+++-..
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 467778899999999999999999998653
No 390
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.83 E-value=0.025 Score=55.89 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+|+|||++|+|||||++-+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 79999999999999999998643
No 391
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.81 E-value=0.007 Score=58.97 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=23.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC
Q 005203 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 518 L~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl 551 (709)
..|+.+.-..--+|+++|++|+|||||++.+.+-
T Consensus 15 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 15 TENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ----CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 3444433333347999999999999999999864
No 392
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.78 E-value=0.014 Score=54.43 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++-+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998864
No 393
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.77 E-value=0.018 Score=55.02 Aligned_cols=29 Identities=34% Similarity=0.473 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc------CCCCCcc
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLR------LYEPTNG 557 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlg------l~~p~~G 557 (709)
-+|+++|++|+|||||++-+++ -|.|+-|
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG 52 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence 4789999999999999999987 4466666
No 394
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.76 E-value=0.021 Score=55.77 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCcce
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL-----YEPTNGQ 558 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl-----~~p~~G~ 558 (709)
+++++|++|+|||||++-+.+- |.|+.|.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~ 63 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE 63 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCccce
Confidence 6999999999999999999875 3566553
No 395
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.76 E-value=0.015 Score=54.63 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++-+++-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999988864
No 396
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.75 E-value=0.028 Score=58.30 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.+.|.||+|+||||+++.+...+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 69999999999999999998765
No 397
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.75 E-value=0.015 Score=54.78 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+|+++|++|+|||||++-+++-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6999999999999999998853
No 398
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.72 E-value=0.015 Score=55.34 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+|+++|++|+|||||++-+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999998754
No 399
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.72 E-value=0.016 Score=57.29 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+|-.+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998755
No 400
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.69 E-value=0.033 Score=57.64 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 005203 531 VAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 531 vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+.|.||+|+||||+++.+...+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 9999999999999999988755
No 401
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.69 E-value=0.0071 Score=67.13 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=34.0
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEE
Q 005203 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILI 561 (709)
Q Consensus 517 vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~i 561 (709)
+++.+ ..+-+|++++|+|+||+|||||++.|.+-...+.|.|.+
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 45544 667789999999999999999999998766544454443
No 402
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.68 E-value=0.019 Score=61.85 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=25.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCcHHHHHHHHh
Q 005203 518 LQHVNISVNPGEVVAIAGLSGSGKSTLVNLLL 549 (709)
Q Consensus 518 L~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLl 549 (709)
+++..+++.+ ...+|+||+||||||++..|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 3666777666 589999999999999998765
No 403
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.68 E-value=0.0015 Score=77.86 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=38.4
Q ss_pred eeEEecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCC
Q 005203 521 VNISVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKE 568 (709)
Q Consensus 521 lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~ 568 (709)
.++.+++|+.+.++||+|||||||++.+++... .+-|.+++.++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLT 549 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhh
Confidence 467789999999999999999999999999885 3567777766543
No 404
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.68 E-value=0.018 Score=54.23 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=23.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
..+..+.|+||+|+||||+++.+...+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999998887653
No 405
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.65 E-value=0.016 Score=54.85 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++-+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988753
No 406
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.63 E-value=0.016 Score=57.03 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.++|+|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998654
No 407
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.61 E-value=0.022 Score=56.16 Aligned_cols=35 Identities=31% Similarity=0.310 Sum_probs=27.6
Q ss_pred ccceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC
Q 005203 516 PVLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 516 ~vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl 551 (709)
..++..-+++ .|..++|+||||+|||||..-|..-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3566655554 6889999999999999999877653
No 408
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.61 E-value=0.011 Score=55.73 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlg 550 (709)
+.=+++++|++|+|||||++-+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344899999999999999999874
No 409
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.61 E-value=0.026 Score=54.03 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999998864
No 410
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.60 E-value=0.017 Score=55.14 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+|+++|++|+|||||++-+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998864
No 411
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.59 E-value=0.017 Score=55.80 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+|+|||++|+|||||++-+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999986
No 412
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.58 E-value=0.017 Score=54.49 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+++++|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998885
No 413
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.57 E-value=0.017 Score=55.65 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+|+|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999998864
No 414
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.56 E-value=0.011 Score=58.09 Aligned_cols=24 Identities=42% Similarity=0.497 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
-+|+++|++|+|||||++-|+|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999864
No 415
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.56 E-value=0.017 Score=55.40 Aligned_cols=28 Identities=36% Similarity=0.523 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCcc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL-----YEPTNG 557 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl-----~~p~~G 557 (709)
+|+++|++|+|||||++-+.+- +.|+.|
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~ 57 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG 57 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 6899999999999999998753 455555
No 416
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.56 E-value=0.017 Score=58.53 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+|+|+|++|+|||||++-|+|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999998743
No 417
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.55 E-value=0.013 Score=57.55 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+-.++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998754
No 418
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.55 E-value=0.017 Score=55.52 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+|+++|++|+|||||++-+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998753
No 419
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.54 E-value=0.018 Score=55.51 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
+++++|++|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 799999999999999999998654
No 420
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.52 E-value=0.017 Score=60.45 Aligned_cols=22 Identities=55% Similarity=0.670 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++|||++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999975
No 421
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.51 E-value=0.079 Score=56.00 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=26.6
Q ss_pred eeeeEEecCCc---EEEEEcCCCCcHHHHHHHHhcCCCC
Q 005203 519 QHVNISVNPGE---VVAIAGLSGSGKSTLVNLLLRLYEP 554 (709)
Q Consensus 519 ~~lsl~I~~Ge---~vAIVG~SGsGKSTLlkLLlgl~~p 554 (709)
+.+.=.++.|+ .+-+.||.|+||||+++.++.-+..
T Consensus 12 ~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 12 EKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp HHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 33333455665 4899999999999999999876543
No 422
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.49 E-value=0.019 Score=54.80 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+|+++|++|+|||||++-+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998874
No 423
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.49 E-value=0.016 Score=58.20 Aligned_cols=29 Identities=21% Similarity=0.507 Sum_probs=22.4
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
..+|..|+|.|++||||||+++.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999987664
No 424
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.49 E-value=0.019 Score=55.33 Aligned_cols=33 Identities=27% Similarity=0.186 Sum_probs=25.1
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhc
Q 005203 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 517 vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlg 550 (709)
.++..-+ --.|.-+.|.|+||+|||||...|..
T Consensus 6 ~lHas~v-~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFL-VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEE-EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEE-EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3444444 34688999999999999999986653
No 425
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.48 E-value=0.02 Score=57.07 Aligned_cols=29 Identities=34% Similarity=0.682 Sum_probs=26.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEP 554 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p 554 (709)
++|..+++-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999987765
No 426
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.47 E-value=8.3 Score=43.65 Aligned_cols=8 Identities=0% Similarity=0.426 Sum_probs=3.5
Q ss_pred EEEEEEEc
Q 005203 502 FVDVSFRY 509 (709)
Q Consensus 502 ~~nVsF~Y 509 (709)
++|+||+-
T Consensus 359 l~~v~~~i 366 (582)
T 3b60_A 359 LRNINLKI 366 (582)
T ss_dssp EEEEEEEE
T ss_pred ccceeEEE
Confidence 44444443
No 427
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.47 E-value=0.019 Score=61.25 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
..++|+||||||||||.+.|...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999887664
No 428
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.46 E-value=0.018 Score=56.21 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+++++|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999988754
No 429
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.46 E-value=0.019 Score=55.26 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+|+++|++|+|||||++-+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 430
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.46 E-value=0.12 Score=56.72 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=25.9
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
-+++-.-+-+.||.|||||+|++.+++-..
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 466677799999999999999999998653
No 431
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.46 E-value=0.077 Score=68.27 Aligned_cols=48 Identities=25% Similarity=0.234 Sum_probs=35.4
Q ss_pred ceeeeE--EecCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-eEEECCEe
Q 005203 518 LQHVNI--SVNPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNG-QILIDGFP 565 (709)
Q Consensus 518 L~~lsl--~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G-~I~idG~d 565 (709)
|+.+-= -+++|+.+.|.|++|+|||||+.-++.......| -+++++..
T Consensus 720 LD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ee 770 (2050)
T 3cmu_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 770 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred HHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCC
Confidence 454442 4899999999999999999999887765544433 56666543
No 432
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.45 E-value=0.019 Score=54.05 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+++++|++|+|||||++-+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999988874
No 433
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.45 E-value=0.018 Score=55.02 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+|+|+|++|+|||||++-+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999888643
No 434
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.44 E-value=0.018 Score=55.59 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
=+++++|++|+|||||++.+.+-.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 379999999999999999998643
No 435
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.43 E-value=0.024 Score=54.03 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
No 436
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.43 E-value=0.087 Score=66.90 Aligned_cols=47 Identities=26% Similarity=0.322 Sum_probs=31.9
Q ss_pred ccceeeeEE---ecCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCcceEEECC
Q 005203 516 PVLQHVNIS---VNPGEVVAIAGLSGSGKSTLVNLLLRLYE-PTNGQILIDG 563 (709)
Q Consensus 516 ~vL~~lsl~---I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~-p~~G~I~idG 563 (709)
+-|+.+ +. +++|+.+.|.||+|+|||||+.-++.-.. .....++++.
T Consensus 369 ~~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~ 419 (1706)
T 3cmw_A 369 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 419 (1706)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred HHHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 345554 33 89999999999999999999866553332 2233445544
No 437
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.39 E-value=0.02 Score=56.86 Aligned_cols=23 Identities=43% Similarity=0.524 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 438
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.38 E-value=8.7 Score=43.49 Aligned_cols=8 Identities=38% Similarity=0.546 Sum_probs=3.5
Q ss_pred EEEEEEEc
Q 005203 502 FVDVSFRY 509 (709)
Q Consensus 502 ~~nVsF~Y 509 (709)
++|+||+-
T Consensus 359 l~~i~l~i 366 (582)
T 3b5x_A 359 LSHVSFSI 366 (582)
T ss_pred cccceEEE
Confidence 44444443
No 439
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.38 E-value=0.047 Score=61.19 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=23.6
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHhc
Q 005203 524 SVNPGEVVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 524 ~I~~Ge~vAIVG~SGsGKSTLlkLLlg 550 (709)
-+++|+.+.|.|++|+|||||+.-++-
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 589999999999999999999865543
No 440
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.35 E-value=0.019 Score=55.07 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+|+++|++|+|||||++-+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 441
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=94.34 E-value=0.025 Score=57.17 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=35.4
Q ss_pred ccccccceeeecCcEEEeCCCCCCCCcc--eeechhHHHHHHHH
Q 005203 96 CCHFHPLKSSSINGFSVQNDSLEHFDGE--VNVDFNEKIRRWIR 137 (709)
Q Consensus 96 ~nhfvvl~~v~~~~~~i~dp~~~~a~g~--r~~~~~e~~~~ftg 137 (709)
-+|||||.+..++.+.|+|| +.|+ ++++++|+.+.|+.
T Consensus 176 ~~H~VVl~GYd~~~vyi~DP----~~g~~~~~vs~~eFe~~w~~ 215 (236)
T 3erv_A 176 NEHCVVLIGYDQESVYIRDP----LKDSLDVKVPREKFEQAWVQ 215 (236)
T ss_dssp TEEEEEEEEECSSEEEEECT----TSCCSCCEEEHHHHHHHHHH
T ss_pred CCeEEEEEEEeCCEEEEECC----CCCCccEEEcHHHHHHHHHh
Confidence 57999999999999999999 9997 89999999998875
No 442
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.34 E-value=0.021 Score=54.65 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++-+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999998853
No 443
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.34 E-value=0.02 Score=56.71 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl 551 (709)
-+|+++|++|+|||||++-+++-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999874
No 444
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.33 E-value=0.036 Score=59.86 Aligned_cols=47 Identities=28% Similarity=0.381 Sum_probs=36.6
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEecChh
Q 005203 645 RIAIARAILRDPTILILDEATSALDAESEHNIKGVLRAVRSDTMTRRTVLVIAHRLI 701 (709)
Q Consensus 645 RIaLARALlr~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~~~~~TvIiIAHRls 701 (709)
+.+|++||..+|+++++|||| |.++ +.++++... .|.+++.++|..+
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~---~~~~l~~~~----~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLET---VETALRAAE----TGHLVFGTLHTNT 245 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHH---HHHHHHHHT----TTCEEEECCCCCS
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHH---HHHHHHHHh----cCCEEEEEECcch
Confidence 569999999999999999999 7665 334454443 2589999999865
No 445
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.33 E-value=0.022 Score=56.59 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=25.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEP 554 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p 554 (709)
.+|..++|.|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999876654
No 446
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.30 E-value=0.021 Score=55.19 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+|+++|++|+|||||++-+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999998753
No 447
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.29 E-value=0.025 Score=56.50 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
..+..+.|+|++||||||+.+.|..-+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998655
No 448
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.27 E-value=0.085 Score=67.86 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=30.0
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-cceEEECCE
Q 005203 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLYEPT-NGQILIDGF 564 (709)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~-~G~I~idG~ 564 (709)
+++|+.+.|.||+|+|||||+.-++.-.... ..-+++++.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E 420 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 420 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 8999999999999999999987666444333 234555553
No 449
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.26 E-value=0.022 Score=54.12 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlg 550 (709)
.=+|+++|++|+|||||++-+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999884
No 450
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.26 E-value=0.021 Score=58.75 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+++++|++|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 451
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.23 E-value=0.018 Score=54.00 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+++++|++|+|||||++-+.+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998875
No 452
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.023 Score=54.57 Aligned_cols=29 Identities=45% Similarity=0.570 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC-----CCCCcc
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRL-----YEPTNG 557 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl-----~~p~~G 557 (709)
=+++++|++|+|||||++-+.+- |.|+.|
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~ 62 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 62 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCC
Confidence 37999999999999999988854 345555
No 453
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.22 E-value=0.018 Score=54.92 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
=+|+++|++|+|||||++-+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999998654
No 454
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.21 E-value=0.025 Score=57.19 Aligned_cols=28 Identities=29% Similarity=0.592 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEP 554 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~~p 554 (709)
+|..++|.|++||||||+++.|...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999999876653
No 455
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.20 E-value=0.023 Score=55.05 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl 551 (709)
=+|+++|++|+|||||++-+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999998853
No 456
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.19 E-value=0.023 Score=54.22 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+|+++|++|+|||||++-+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
No 457
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.19 E-value=0.022 Score=59.67 Aligned_cols=23 Identities=52% Similarity=0.567 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl 551 (709)
-.|||+|++|+|||||++-|+|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999999985
No 458
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.18 E-value=0.023 Score=53.96 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+|+++|++|+|||||++-+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999998763
No 459
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.18 E-value=0.026 Score=59.48 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+..++|+||||||||||..-|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999988665
No 460
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.18 E-value=0.025 Score=63.86 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCcceEEECCEeCCCCCHHHHhcce
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILIDGFPIKEVDIKWLRGRI 578 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~~p~~G~I~idG~di~~~~~~~lR~~I 578 (709)
....|.++|.+||||||+.+.|...+... +.|...++.+++|+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~-------~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWI-------GVPTKVFNVGEYRREA 78 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc-------CCCeEEecccHHHHHh
Confidence 34679999999999999999998655321 2222224556666653
No 461
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.17 E-value=0.021 Score=54.11 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+++++|++|+|||||++-+.+
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 462
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.16 E-value=0.025 Score=57.98 Aligned_cols=30 Identities=33% Similarity=0.448 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCcce
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLYEPTNGQ 558 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~~p~~G~ 558 (709)
.++++||.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999877655454
No 463
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.14 E-value=0.024 Score=57.88 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+++++|++|+|||||++-|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
No 464
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.14 E-value=0.023 Score=55.65 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
-.++|+|++|+|||||++-|++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 379999999999999998888654
No 465
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.13 E-value=0.024 Score=54.64 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl 551 (709)
=+|+|+|++|+|||||++-+++-
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47899999999999999998754
No 466
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.12 E-value=0.025 Score=55.43 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlg 550 (709)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 799999999999999999986
No 467
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.11 E-value=0.028 Score=52.71 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl 551 (709)
=+++++|++|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999988853
No 468
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.11 E-value=0.022 Score=53.50 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=24.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYEP 554 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~p 554 (709)
+.+..+.|+||+|+||||+++.+...+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34667899999999999999998876644
No 469
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.10 E-value=0.026 Score=55.04 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+|+|+|++|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998643
No 470
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.09 E-value=0.025 Score=54.03 Aligned_cols=28 Identities=39% Similarity=0.566 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCCcc
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL-----YEPTNG 557 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl-----~~p~~G 557 (709)
+|+++|++|+|||||++-+.+- |.|+-|
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~ 55 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLE 55 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCC
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc
Confidence 6999999999999999887642 456655
No 471
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.08 E-value=0.029 Score=55.83 Aligned_cols=28 Identities=32% Similarity=0.567 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLYEP 554 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~~p 554 (709)
+|..|++.|++||||||+++.|...++.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999999877753
No 472
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.07 E-value=0.027 Score=56.47 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=24.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
++|..++|.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987654
No 473
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.05 E-value=0.027 Score=54.15 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q 005203 528 GEVVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 528 Ge~vAIVG~SGsGKSTLlkLLlgl 551 (709)
.=+++++|++|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999988753
No 474
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.11 Score=57.54 Aligned_cols=30 Identities=17% Similarity=0.359 Sum_probs=26.3
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 523 ISVNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 523 l~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+-+++-.-+-+.||+|||||+|++.+++-.
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 356778889999999999999999999754
No 475
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.04 E-value=0.027 Score=56.51 Aligned_cols=27 Identities=37% Similarity=0.489 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
+|..++|.|..||||||+++.|..-++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999987663
No 476
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.03 E-value=0.033 Score=54.17 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
=+++++|++|+|||||++-+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999888643
No 477
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.98 E-value=0.026 Score=57.78 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+++++|++|+|||||++.|+|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999744
No 478
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.97 E-value=0.026 Score=54.54 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999863
No 479
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.96 E-value=0.027 Score=57.45 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+++++|++|+|||||++.|+|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999743
No 480
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.96 E-value=0.043 Score=53.23 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc-----CCCCCcce
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLR-----LYEPTNGQ 558 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlg-----l~~p~~G~ 558 (709)
=+++++|++|+|||||++-+.+ -+.|+.|.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~ 65 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD 65 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE
T ss_pred EEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc
Confidence 3799999999999999987774 34555553
No 481
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.96 E-value=0.027 Score=58.29 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlg 550 (709)
..+.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 482
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.90 E-value=0.037 Score=54.29 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC-----CCCCcce
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRL-----YEPTNGQ 558 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl-----~~p~~G~ 558 (709)
=+|+++|++|+|||||++-+.+- |.|+-|.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~ 62 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFE 62 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeee
Confidence 37999999999999999988754 4555554
No 483
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.90 E-value=0.018 Score=54.25 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=9.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++-+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988754
No 484
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.84 E-value=0.02 Score=58.34 Aligned_cols=29 Identities=38% Similarity=0.460 Sum_probs=24.6
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 525 VNPGEVVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 525 I~~Ge~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
.++|..|+|.|+.||||||+++.|...+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36788999999999999999999987763
No 485
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.82 E-value=0.027 Score=54.10 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhc
Q 005203 526 NPGEVVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 526 ~~Ge~vAIVG~SGsGKSTLlkLLlg 550 (709)
++.=+++++|++|+|||||++-+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3445799999999999999999874
No 486
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.79 E-value=11 Score=42.70 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=8.6
Q ss_pred EEEEEEEEcCCC
Q 005203 501 DFVDVSFRYSSR 512 (709)
Q Consensus 501 ~~~nVsF~Y~~~ 512 (709)
.++|+||.-+..
T Consensus 370 ~l~~isl~i~~G 381 (598)
T 3qf4_B 370 VLKDITFHIKPG 381 (598)
T ss_dssp SCCSEEEECCTT
T ss_pred cccceEEEEcCC
Confidence 478888887643
No 487
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.78 E-value=0.03 Score=53.42 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++++|++|+|||||++-+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999988854
No 488
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.76 E-value=0.03 Score=58.26 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
.|+|||++|+|||||++.|+|..-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999998753
No 489
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.76 E-value=0.01 Score=60.31 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=25.5
Q ss_pred cceeeeEEecCCcEEEEEcCCCCcHHHHHHHHhcC
Q 005203 517 VLQHVNISVNPGEVVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 517 vL~~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl 551 (709)
.+++++...++| +.|.||+|+|||||++.+.+.
T Consensus 35 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 35 RYANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 344445555555 889999999999999999863
No 490
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.75 E-value=0.064 Score=64.17 Aligned_cols=35 Identities=29% Similarity=0.268 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCcc-eEEECC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLYEPTNG-QILIDG 563 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~~p~~G-~I~idG 563 (709)
..+.|+||+|+|||++++.|...+...++ -|.+|.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 47899999999999999999988755433 344543
No 491
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.71 E-value=0.029 Score=57.77 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+|+|||++|+|||||++.|+|--
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999865
No 492
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.66 E-value=0.031 Score=59.12 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC
Q 005203 529 EVVAIAGLSGSGKSTLVNLLLRLYE 553 (709)
Q Consensus 529 e~vAIVG~SGsGKSTLlkLLlgl~~ 553 (709)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999997663
No 493
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.66 E-value=0.031 Score=54.88 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+++|+|++|+|||||++-+++-
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999877754
No 494
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.58 E-value=0.036 Score=58.03 Aligned_cols=26 Identities=35% Similarity=0.620 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
++-+++++|++|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45689999999999999999987653
No 495
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.52 E-value=0.017 Score=56.39 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+|+|+|++|+|||||++.+++-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988853
No 496
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.43 E-value=13 Score=42.19 Aligned_cols=13 Identities=31% Similarity=0.227 Sum_probs=9.7
Q ss_pred EEEEEEEEEcCCC
Q 005203 500 IDFVDVSFRYSSR 512 (709)
Q Consensus 500 I~~~nVsF~Y~~~ 512 (709)
-.++|+||+-+..
T Consensus 358 ~vl~~isl~i~~G 370 (595)
T 2yl4_A 358 PIFQDFSLSIPSG 370 (595)
T ss_dssp EEEEEEEEEECTT
T ss_pred ccccceEEEEcCC
Confidence 4589999987643
No 497
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.43 E-value=0.018 Score=62.33 Aligned_cols=53 Identities=17% Similarity=0.296 Sum_probs=40.2
Q ss_pred CcEEEEEEEEEcCCCCCCccce-----------eeeEEecCCcEEEEEcCCCCcHHHHHHHHhcCC
Q 005203 498 GRIDFVDVSFRYSSREMVPVLQ-----------HVNISVNPGEVVAIAGLSGSGKSTLVNLLLRLY 552 (709)
Q Consensus 498 ~~I~~~nVsF~Y~~~~~~~vL~-----------~lsl~I~~Ge~vAIVG~SGsGKSTLlkLLlgl~ 552 (709)
+...|++++--||.. +.-++ |.=+.|-+|++..|+|++|+|||||++-|.+..
T Consensus 136 ~r~~fe~l~Pi~P~~--R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 136 DRVNFDNLTPDYPRE--RFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CCCCGGGSCEECCCS--BCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred cccccccCCCCCchh--hccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 345566666666642 34455 566789999999999999999999998888753
No 498
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.42 E-value=0.026 Score=53.68 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q 005203 527 PGEVVAIAGLSGSGKSTLVNLLLR 550 (709)
Q Consensus 527 ~Ge~vAIVG~SGsGKSTLlkLLlg 550 (709)
+.=+++++|++|+|||||++-+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 344799999999999999999864
No 499
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.41 E-value=0.038 Score=53.50 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+|+++|++|+|||||++-+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6899999999999999988753
No 500
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.23 E-value=0.02 Score=55.06 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=4.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 005203 530 VVAIAGLSGSGKSTLVNLLLRL 551 (709)
Q Consensus 530 ~vAIVG~SGsGKSTLlkLLlgl 551 (709)
+|+++|++|+|||||++-+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999988764
Done!