BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005204
(709 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225444145|ref|XP_002268852.1| PREDICTED: uncharacterized protein LOC100257655 [Vitis vinifera]
gi|297740887|emb|CBI31069.3| unnamed protein product [Vitis vinifera]
Length = 705
Score = 947 bits (2449), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/627 (72%), Positives = 513/627 (81%), Gaps = 2/627 (0%)
Query: 84 PLTLRTKDLSSVSYRNHPTPT-SETEEKMLDSRS-WEILKIKLKQLGLDIGRCAPGVENR 141
P++L+T L S+ N P P SE E +S + +LK KL+ +G D G +
Sbjct: 73 PISLKTFALPYTSHSNVPGPVYSENPEDTSNSSARLNVLKKKLEVIGFDTQMLKTGQYSH 132
Query: 142 MLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSK 201
+ CP C GGDS E SLSLF+ DG AVWMC R KCG +G+ A V+++ S L + +K
Sbjct: 133 LTCPTCKGGDSMEKSLSLFITLDGDHAVWMCHRGKCGSRGNIRAFVNDSSSYGRLNQITK 192
Query: 202 MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGK 261
+K REITE+SL L+PL +EL AYF ER+IS +TL RN VMQK +G + +IAF Y RNG
Sbjct: 193 IKPKREITEESLGLKPLCSELVAYFGERMISEKTLARNSVMQKSYGDQFIIAFTYRRNGV 252
Query: 262 LVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPD 321
LV+CKYRD NK FWQEKDTEK+FYG+DDI+ SDIIIVEGE+DKLSMEEAGF NCVSVPD
Sbjct: 253 LVSCKYRDVNKNFWQEKDTEKIFYGVDDIKEASDIIIVEGEIDKLSMEEAGFYNCVSVPD 312
Query: 322 GAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRE 381
GAP SVS K S E+D KYQYLWNCK YL++ASRIILATDGD PG ALAEELARR+GRE
Sbjct: 313 GAPPSVSTKVFESAEKDIKYQYLWNCKEYLEKASRIILATDGDAPGLALAEELARRLGRE 372
Query: 382 RCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYY 441
RCWRV+WPKKN+V+HFKDANEVLMYLGP LKEV+ENAE+YPI GLFNF YF+EID YY
Sbjct: 373 RCWRVKWPKKNEVEHFKDANEVLMYLGPDVLKEVIENAEIYPIQGLFNFSHYFNEIDGYY 432
Query: 442 HRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
H T G E G+STGWR LN LYNV+PGELT+VTGVPNSGKSEWIDAL+CNIN GW F L
Sbjct: 433 HHTLGFELGVSTGWRGLNGLYNVVPGELTVVTGVPNSGKSEWIDALLCNINRSVGWSFAL 492
Query: 502 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDS 561
CSMENKVREHARKLLEKHIKKPFF+A YG S ERMTVEEFE GK WLS TF LIRCE DS
Sbjct: 493 CSMENKVREHARKLLEKHIKKPFFKAGYGESIERMTVEEFELGKKWLSETFYLIRCEKDS 552
Query: 562 LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHA 621
LP+IKWVLDLAK+AVLRHGVRGLVIDPYNELDHQRP QTETEYVSQMLTM+KRFAQHH+
Sbjct: 553 LPNIKWVLDLAKSAVLRHGVRGLVIDPYNELDHQRPPGQTETEYVSQMLTMIKRFAQHHS 612
Query: 622 CHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVR 681
CHVWFVAHPRQLH W G PPN+YDISGSAHFINKCDNGIVIHRNR+PEAGP+D+VQVCVR
Sbjct: 613 CHVWFVAHPRQLHQWNGGPPNMYDISGSAHFINKCDNGIVIHRNRNPEAGPVDQVQVCVR 672
Query: 682 KVRNKVVGTIGEAFLSYNRVTGEYMDI 708
KVRNKVVGTIG+AFLSY+R++G Y DI
Sbjct: 673 KVRNKVVGTIGDAFLSYDRISGVYTDI 699
>gi|356555942|ref|XP_003546288.1| PREDICTED: uncharacterized protein LOC100779625 [Glycine max]
Length = 678
Score = 945 bits (2443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/624 (73%), Positives = 521/624 (83%), Gaps = 6/624 (0%)
Query: 84 PLTLRTKDLSSVSYRNHPTPTSETEEKMLDSRSWE--ILKIKLKQLGLDIGRCAPGVENR 141
P LRT S+ + P P + E M S ++ ILK KL+ +G++ G C PG N
Sbjct: 46 PSPLRTNGYHGSSHASIPRPV-QLESPMEKSVEFQLNILKKKLEAIGMETGMCEPGQYNH 104
Query: 142 MLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSK 201
+LCP+C GGD EE SLSL++ DG SA W CFR KCGWKGST A S S+ +
Sbjct: 105 LLCPECLGGDQEERSLSLYIAPDGGSAAWNCFRGKCGWKGSTQAFAG---SSSARTQVDP 161
Query: 202 MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGK 261
+K IR+ITE+ LELEPL +EL YF+ERLIS +TL RN V Q+++ ++VIAFPY RNG
Sbjct: 162 VKKIRKITEEELELEPLCDELVVYFSERLISKQTLERNGVKQRKYDDQIVIAFPYRRNGG 221
Query: 262 LVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPD 321
L++CKYRD NK FWQE +TEK+FYGLDDI G SDIIIVEGEMDKL+MEEAGFLNCVSVPD
Sbjct: 222 LISCKYRDINKMFWQEANTEKIFYGLDDIVGHSDIIIVEGEMDKLAMEEAGFLNCVSVPD 281
Query: 322 GAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRE 381
GAP S+S K +P +++D KYQYLWNCK LK+A+R+ILATDGDPPGQALAEELARR+G+E
Sbjct: 282 GAPPSISSKELPPQDKDKKYQYLWNCKDELKKATRVILATDGDPPGQALAEELARRIGKE 341
Query: 382 RCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYY 441
+CWRVRWP+K+ D+ KDANEVLMYLGP ALKEV+ENAELYPI GLFNFRDYFDEIDAYY
Sbjct: 342 KCWRVRWPRKSRSDNCKDANEVLMYLGPDALKEVIENAELYPIRGLFNFRDYFDEIDAYY 401
Query: 442 HRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
HRT G + GISTGW LN+LYNV+PGELTIVTGVPNSGKSEWIDAL+CN+NE GWKF L
Sbjct: 402 HRTLGYDIGISTGWNNLNDLYNVVPGELTIVTGVPNSGKSEWIDALLCNLNEIVGWKFAL 461
Query: 502 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDS 561
CSMENKVREHARKLLEKH+KKPFF YG S ERM+VEEFEQGK WLS+TFSLIRCE+DS
Sbjct: 462 CSMENKVREHARKLLEKHLKKPFFNERYGESVERMSVEEFEQGKLWLSDTFSLIRCEDDS 521
Query: 562 LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHA 621
LP+I WVLDLAKAAVLRHGVRGLVIDPYNELDHQRP +QTETEYVSQMLT++KRFAQHH
Sbjct: 522 LPNISWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPPNQTETEYVSQMLTLIKRFAQHHG 581
Query: 622 CHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVR 681
CHVWFVAHPRQLHNWVG PPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID+VQVCVR
Sbjct: 582 CHVWFVAHPRQLHNWVGGPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDQVQVCVR 641
Query: 682 KVRNKVVGTIGEAFLSYNRVTGEY 705
KVRNKV GTIGEA L YNRVTGEY
Sbjct: 642 KVRNKVAGTIGEAILLYNRVTGEY 665
>gi|356532467|ref|XP_003534794.1| PREDICTED: uncharacterized protein LOC100804637 [Glycine max]
Length = 679
Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/626 (73%), Positives = 523/626 (83%), Gaps = 9/626 (1%)
Query: 84 PLTLRTKDLSSVSYRNHPTPT---SETEEKMLDSRSWEILKIKLKQLGLDIGRCAPGVEN 140
PL LRT S + P P S E+ M ILK KL+ +G++ C PG N
Sbjct: 46 PLPLRTNGYHGASQASIPRPVQLESPVEKNM--ELQLNILKKKLEAIGVETEMCEPGQYN 103
Query: 141 RMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFS 200
+LCP+C GGD EE SLSL++ DG SA W CFR KCGWKGST A +N +++ L +
Sbjct: 104 HLLCPECLGGDQEERSLSLYIAPDGGSAAWNCFRGKCGWKGSTQAFAGSNSARTQL---A 160
Query: 201 KMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG 260
+K IR+ITE+ LELEPL +EL YF+ERLIS +TL RN V Q+++ ++VIAFPY +NG
Sbjct: 161 PVKKIRKITEEELELEPLCDELVTYFSERLISKQTLERNGVKQRKYDDQIVIAFPYHQNG 220
Query: 261 KLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVP 320
L++CKYRD NK FWQE +TEK+FYGLDDI G +DIIIVEGEMDKL+MEEAGF NCVSVP
Sbjct: 221 GLISCKYRDINKMFWQEANTEKIFYGLDDIVGHNDIIIVEGEMDKLAMEEAGFFNCVSVP 280
Query: 321 DGAPSSVS-KKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVG 379
DGAP SVS K+ +P +++D KYQYLWNCK LK+A+R+ILATDGDPPGQALAEELARR+G
Sbjct: 281 DGAPPSVSSKEELPPQDKDKKYQYLWNCKDELKKATRVILATDGDPPGQALAEELARRIG 340
Query: 380 RERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDA 439
+E+CWRVRWP+K+ D+ KDANEVLMYLGP ALKEV+ENAELYPI GLFNFRDYFDEIDA
Sbjct: 341 KEKCWRVRWPRKSRSDNCKDANEVLMYLGPDALKEVIENAELYPIRGLFNFRDYFDEIDA 400
Query: 440 YYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKF 499
YYHRT G + GISTGW LN+LYNV+PGELTIVTGVPNSGKSEWIDAL+CN+NE AGWKF
Sbjct: 401 YYHRTLGYDIGISTGWNNLNDLYNVVPGELTIVTGVPNSGKSEWIDALLCNLNEIAGWKF 460
Query: 500 VLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN 559
LCSMENKVREHARKLLEKH+KKPFF YG S ERM+VEEFEQGK WLS+TFSLIRCE+
Sbjct: 461 ALCSMENKVREHARKLLEKHLKKPFFNERYGESVERMSVEEFEQGKLWLSDTFSLIRCED 520
Query: 560 DSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 619
+SLP+I WVLDLAKAAVLRHGVRGLVIDPYNELDHQRP +QTETEYVSQMLT++KRFAQH
Sbjct: 521 NSLPNISWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPPNQTETEYVSQMLTLIKRFAQH 580
Query: 620 HACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVC 679
H CHVWFVAHPRQLHNWVG+PPNLYDISGSAHFINKCDNGIVIHRNRDPE+GPID+VQVC
Sbjct: 581 HGCHVWFVAHPRQLHNWVGDPPNLYDISGSAHFINKCDNGIVIHRNRDPESGPIDQVQVC 640
Query: 680 VRKVRNKVVGTIGEAFLSYNRVTGEY 705
VRKVRNKV GTIGEA L YNRVTGEY
Sbjct: 641 VRKVRNKVAGTIGEAMLLYNRVTGEY 666
>gi|224056777|ref|XP_002299018.1| predicted protein [Populus trichocarpa]
gi|222846276|gb|EEE83823.1| predicted protein [Populus trichocarpa]
Length = 658
Score = 927 bits (2396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/617 (71%), Positives = 504/617 (81%), Gaps = 26/617 (4%)
Query: 118 EILKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKC 177
EIL+ KL ++G+++ APG N + CP C GG S+E S SLF+ DG +A W CFRAKC
Sbjct: 26 EILRFKLAEVGIELDHFAPGQYNALTCPMCKGGGSKEKSFSLFISADGGNASWNCFRAKC 85
Query: 178 GWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRA------------- 224
GW G T + + + K SK+K IREITE SLELEPL +E+ A
Sbjct: 86 GWNGGTKPFAGSKSTYGTSLKLSKVKEIREITEQSLELEPLCDEVVALSFYLCVLILILS 145
Query: 225 -----------YFAERLISAETLRRNRVMQKRHGH--EVVIAFPYWRNGKLVNCKYRDFN 271
YF ERLISAETL RN+VMQK +G +V IAF Y RNG LV+CKYRD N
Sbjct: 146 CMMLIWVMLVCYFKERLISAETLARNQVMQKGYGDRGQVAIAFTYRRNGVLVSCKYRDIN 205
Query: 272 KKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKN 331
K+FWQEKDT+KVFYGLDDI+G +IIIVEGEMDKL+MEEAGF NCVSVPDGAP SVS K
Sbjct: 206 KRFWQEKDTKKVFYGLDDIKGADEIIIVEGEMDKLAMEEAGFRNCVSVPDGAPPSVSPKE 265
Query: 332 VPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 391
+P ++DTKYQYLWNCK YL + SRIILATDGDPPGQALAEELARR+GRERCWRV+WPKK
Sbjct: 266 LPPNQEDTKYQYLWNCKEYLDKVSRIILATDGDPPGQALAEELARRLGRERCWRVKWPKK 325
Query: 392 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGI 451
N +HFKDANEVLM+ GP AL++++ENAELYPI GLF F DYF EIDAYY+RT G EFG
Sbjct: 326 NTDEHFKDANEVLMFSGPLALRDIIENAELYPIRGLFQFSDYFPEIDAYYNRTLGYEFGA 385
Query: 452 STGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511
STGW ALNE+YNV+PGELT+VTGVPNSGKSEWIDAL+CN+NE GWKF LCSMEN VR+H
Sbjct: 386 STGWTALNEIYNVMPGELTLVTGVPNSGKSEWIDALLCNLNESVGWKFALCSMENNVRQH 445
Query: 512 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 571
ARKLLEKH+KKPFF+A YG SAERM+ +E E+GK WLS+TF LIRCE+D+LP+IKWVLDL
Sbjct: 446 ARKLLEKHMKKPFFDARYGESAERMSAKELEEGKQWLSDTFYLIRCEDDALPNIKWVLDL 505
Query: 572 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPR 631
A+AAVLRHGVRGLVIDPYNELDHQRP + TETEYVSQMLT++KRFAQHHACHVW VAHPR
Sbjct: 506 ARAAVLRHGVRGLVIDPYNELDHQRPPNMTETEYVSQMLTLIKRFAQHHACHVWLVAHPR 565
Query: 632 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI 691
QL NW G+PPNLYDISGSAHF+NKCDNGIVIHRNR+P AGPID+VQV VRKVRNKV GTI
Sbjct: 566 QLQNWTGQPPNLYDISGSAHFVNKCDNGIVIHRNRNPNAGPIDQVQVLVRKVRNKVAGTI 625
Query: 692 GEAFLSYNRVTGEYMDI 708
G+AFLSYNRVTGE+M++
Sbjct: 626 GDAFLSYNRVTGEFMNV 642
>gi|255564299|ref|XP_002523146.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223537553|gb|EEF39177.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 700
Score = 917 bits (2370), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/611 (70%), Positives = 502/611 (82%), Gaps = 17/611 (2%)
Query: 101 PTPTSETEEKMLDSRSWEILKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLF 160
P + ++E+ L E L+ KL+ LG+ + PG + +LCP CNGG S E SLSLF
Sbjct: 89 PVSSEDSEKPHL-----EKLRGKLEVLGIQMENLVPGQYSSLLCPMCNGGQSGERSLSLF 143
Query: 161 LDEDGFSAVWMCFRAKCGWKGSTSALVDNNRS------QSSLKKFSKMKTIREITEDSLE 214
+ DG +A W CFR KCGW G T L+ + + +SS++ K+K R+IT + L
Sbjct: 144 ISPDGANATWNCFRGKCGWNGGTKLLLVQSYAGRHSTYESSVQP-KKVKLTRKITVEGLG 202
Query: 215 LEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKF 274
L+PL E+ +FAERLISAETL RNRVMQ+ +G+++VIAF YWRNG+L +CKYRD NK F
Sbjct: 203 LQPLCTEILGFFAERLISAETLHRNRVMQRSYGNQIVIAFTYWRNGELTSCKYRDINKNF 262
Query: 275 WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPS 334
WQE DT+K+FYGLDDI+ DIIIVEGEMDKL+MEEAGF NCVSVPDGAP VS+K +PS
Sbjct: 263 WQESDTDKIFYGLDDIKETDDIIIVEGEMDKLAMEEAGFRNCVSVPDGAPGQVSQKELPS 322
Query: 335 EEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV 394
+EQDTKYQYLWNCK YL +ASRIILATDGDPPGQALAEE+ARR+GRERCWR+RWPKK+
Sbjct: 323 KEQDTKYQYLWNCKEYLDKASRIILATDGDPPGQALAEEIARRIGRERCWRIRWPKKSKD 382
Query: 395 DHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTG 454
HFKDANEVLMYLGP AL+EV++NAELYPI GLFNF +YFDEIDAYYHRT G E+G STG
Sbjct: 383 THFKDANEVLMYLGPTALREVIDNAELYPISGLFNFMEYFDEIDAYYHRTLGLEYGASTG 442
Query: 455 WRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARK 514
W +L+ LYNV+PGELTIVTGVPNSGKSEWIDAL+CN+N GWKF LCSMEN+VREHARK
Sbjct: 443 WSSLDGLYNVMPGELTIVTGVPNSGKSEWIDALLCNLNRSVGWKFALCSMENRVREHARK 502
Query: 515 LLEKHIKKPFFEANY-----GGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVL 569
LLEK IKKPFF+A Y G +RM VEEFE+GK WL++TF LIRCE+D LPS+ WVL
Sbjct: 503 LLEKRIKKPFFDARYASDIDGQFVKRMNVEEFEEGKQWLADTFYLIRCEDDKLPSVDWVL 562
Query: 570 DLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 629
LA+AAVLRHGVRGLVIDPYNELDHQRP+S TETEYVS+MLT++KRFAQHH CHVWFVAH
Sbjct: 563 KLARAAVLRHGVRGLVIDPYNELDHQRPISMTETEYVSRMLTLIKRFAQHHLCHVWFVAH 622
Query: 630 PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVG 689
PRQL NW G PPNLYDISGSAHFINKCDNGIV+HRNRDPEAG ID+VQ+CVRKVRNKVVG
Sbjct: 623 PRQLQNWTGSPPNLYDISGSAHFINKCDNGIVVHRNRDPEAGAIDQVQICVRKVRNKVVG 682
Query: 690 TIGEAFLSYNR 700
TIG+AFLSYNR
Sbjct: 683 TIGDAFLSYNR 693
>gi|413943393|gb|AFW76042.1| hypothetical protein ZEAMMB73_832314 [Zea mays]
Length = 736
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/624 (66%), Positives = 495/624 (79%), Gaps = 21/624 (3%)
Query: 95 VSYRNHPTPTSETEEKMLDSRSWEILKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEE 154
+S +N+ T + E K++ KLK G++ + G RMLCP+CNGG SEE
Sbjct: 86 LSAKNYSTASEERLGKIIQ---------KLKNEGINPKQWRLGNFQRMLCPQCNGGSSEE 136
Query: 155 LSLSLFLDEDGFSAVWMCFRAKCGWKGSTSA-----------LVDNNRSQSSLKKFSKMK 203
LSLS+++ +DG +A W CFR+KCGW+G A +++ Q K + K
Sbjct: 137 LSLSVYIRKDGINATWNCFRSKCGWRGFVQADGVTNISQGKSGIESETDQEVEAKKAANK 196
Query: 204 TIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLV 263
R+I+++ L LEPL +EL YFA R+ISAETLRRN+VMQ+ +++ IAF Y R+G LV
Sbjct: 197 VYRKISDEDLNLEPLCDELVEYFATRMISAETLRRNKVMQRNWNNKISIAFTYRRDGALV 256
Query: 264 NCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGA 323
CKYR +K F QE +TEK+FYGLDDI+ D+IIVEGE+DKLSM+EAG+ NCVSVPDGA
Sbjct: 257 GCKYRAVDKTFSQEANTEKIFYGLDDIKRAHDVIIVEGEIDKLSMDEAGYRNCVSVPDGA 316
Query: 324 PSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERC 383
P VS K +P +EQD KY YLWNCK YL ASRIILATD D PGQALAEELARR+G+ERC
Sbjct: 317 PPKVSSK-IPDQEQDKKYSYLWNCKDYLDSASRIILATDNDRPGQALAEELARRLGKERC 375
Query: 384 WRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHR 443
WRV WPKKND D KDANEVLM+LGP AL++V+E+AELYPI GLF+F +F EID Y+
Sbjct: 376 WRVNWPKKNDTDTCKDANEVLMFLGPQALRKVIEDAELYPIRGLFSFEQFFPEIDNYFLG 435
Query: 444 TSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503
GDE GI TGW+++++LY V+PGELT+VTGVPNSGKSEWIDAL+CNIN+ +GWKFVLCS
Sbjct: 436 IHGDELGIHTGWKSMDDLYKVVPGELTVVTGVPNSGKSEWIDALLCNINKQSGWKFVLCS 495
Query: 504 MENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLP 563
MENKV+EHARKLLEKHI+KPFF A YGGSA+RMT +EFE GK WL+ TF LIRCE+DSLP
Sbjct: 496 MENKVKEHARKLLEKHIQKPFFNARYGGSAQRMTPDEFEAGKQWLNKTFHLIRCEDDSLP 555
Query: 564 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623
SI WVLDLAKAAVLRHGVRGLVIDPYNELDHQRP +QTETEYVSQ+LT +KRFAQHH+CH
Sbjct: 556 SINWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPSNQTETEYVSQILTKIKRFAQHHSCH 615
Query: 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 683
VWFVAHPRQL NW G PPN+YDISGSAHFINKCDNGIVIHRNRDP AGP+D VQVCVRKV
Sbjct: 616 VWFVAHPRQLQNWNGGPPNIYDISGSAHFINKCDNGIVIHRNRDPNAGPLDTVQVCVRKV 675
Query: 684 RNKVVGTIGEAFLSYNRVTGEYMD 707
RNKVVG IG+AFL+Y+RVTGE+ D
Sbjct: 676 RNKVVGQIGDAFLTYDRVTGEFKD 699
>gi|449488512|ref|XP_004158064.1| PREDICTED: twinkle protein, mitochondrial-like [Cucumis sativus]
Length = 679
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/628 (67%), Positives = 483/628 (76%), Gaps = 42/628 (6%)
Query: 84 PLTLRTKDLSS-VSYRNHPTPTSETE---EKMLDSRSWEILKIKLKQLGLDIGRCAPGVE 139
P ++ +SS S+ N P P + E +K S IL+ KL+ L +DI C PG
Sbjct: 78 PFAMKPNGVSSFTSHANVPRPPALLENPPDKASSSTRLNILRKKLQDLDIDIEACVPGQF 137
Query: 140 NRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKF 199
+LCP A D S L +
Sbjct: 138 YSLLCPM--------------------------------------AFADGRSSYKHLGQV 159
Query: 200 SKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRN 259
+ + IR+IT +SL+LEPL ++L YFAERLIS +TL RN VMQKR +++ +AF Y+R
Sbjct: 160 ALKQNIRKITVESLQLEPLCDQLVDYFAERLISKQTLLRNSVMQKRSDNQIAVAFTYYRG 219
Query: 260 GKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSV 319
G L++CKYRD NKKFWQE +TE++FYG+DDI+G SDIIIVEGEMDKLSM EAG NCVSV
Sbjct: 220 GALISCKYRDANKKFWQEPNTERIFYGIDDIDGASDIIIVEGEMDKLSMAEAGIHNCVSV 279
Query: 320 PDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVG 379
PDGAP+SVS+K+VP ++D K+Q+LWNCK YL +ASRIILATDGD PGQALAEE+ARRVG
Sbjct: 280 PDGAPASVSEKDVPPADKDKKFQFLWNCKDYLNKASRIILATDGDTPGQALAEEIARRVG 339
Query: 380 RERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDA 439
RERCWRV+WPKKN+VDHFKDANEVLMYLGP ALKEVV+NAELYPI GLF F+DYF EIDA
Sbjct: 340 RERCWRVKWPKKNEVDHFKDANEVLMYLGPEALKEVVDNAELYPISGLFRFKDYFHEIDA 399
Query: 440 YYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKF 499
YYH+ G+EFG+ TGWR LN+LYNV+PGELTIVTGVPNSGKSEWIDAL+CN+N AGWKF
Sbjct: 400 YYHKKFGNEFGVPTGWRCLNDLYNVVPGELTIVTGVPNSGKSEWIDALLCNLNASAGWKF 459
Query: 500 VLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN 559
LCSMENKVREH RKLLEKHIKKPFF YGGS ER++ EE EQGK WL +TF L+R E
Sbjct: 460 ALCSMENKVREHGRKLLEKHIKKPFFVGRYGGSVERLSDEELEQGKQWLDDTFFLLRSEK 519
Query: 560 DSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 619
DSLPSI WVLDLAKAAVLRHGV GLVIDPYNELDHQR +QTETEYVSQMLT VKRFAQH
Sbjct: 520 DSLPSISWVLDLAKAAVLRHGVSGLVIDPYNELDHQRLPNQTETEYVSQMLTKVKRFAQH 579
Query: 620 HACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVC 679
H CHVWFVAHPRQL NW G PPN+YDISGSAHFINKCDNGIVIHRNRDPE+GPID VQVC
Sbjct: 580 HGCHVWFVAHPRQLQNWSGSPPNMYDISGSAHFINKCDNGIVIHRNRDPESGPIDLVQVC 639
Query: 680 VRKVRNKVVGTIGEAFLSYNRVTGEYMD 707
VRKVRNKV GTIGEA+L YNRVTGE++D
Sbjct: 640 VRKVRNKVAGTIGEAYLEYNRVTGEFLD 667
>gi|302141745|emb|CBI18948.3| unnamed protein product [Vitis vinifera]
Length = 696
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/674 (64%), Positives = 505/674 (74%), Gaps = 17/674 (2%)
Query: 43 TINSSPCFSSSPRRLITTSLAFK-RINNNNYKNDD----DNNNNHHPLTLRTKDLSSVSY 97
I+SSP +S + L +T L R+N + + + P++L+T L S+
Sbjct: 26 VISSSPTIMASKQLLKSTPLTLPLRLNLYSPVTISAFPLKSTSRILPVSLKTSALPYTSH 85
Query: 98 RNHPTPT-SETEEKMLD-SRSWEILKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEEL 155
N P P SE E + S + +LK KL+ +G D G + +LCP C GG S E
Sbjct: 86 SNVPRPVYSENPEDTSNFSARFNVLKKKLEAIGFDTQMLKTGQYDNLLCPACKGGYSMEK 145
Query: 156 SLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLEL 215
SLSL + DG AVW C R KCGW+G T A + S L + +K+K REITE SL L
Sbjct: 146 SLSLVITLDGNCAVWTCHRGKCGWRGDTRAFANGRSSYGRLNQITKIKPKREITEKSLGL 205
Query: 216 EPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFW 275
EPL EL AYF ER+IS +TL RN VMQK +G E +IAF Y RNG V+CKYRD NK FW
Sbjct: 206 EPLCRELIAYFGERMISEKTLARNSVMQKTYGDEFIIAFTYRRNGVFVSCKYRDVNKNFW 265
Query: 276 QEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSE 335
QE+DTEK+FYG+DDI+ SDIIIVEGE+DKLSMEEAGF NCVSVP+GAP+SVS K S+
Sbjct: 266 QEEDTEKIFYGVDDIKAASDIIIVEGEIDKLSMEEAGFYNCVSVPNGAPASVSTKVFKSD 325
Query: 336 EQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVD 395
E+DTKYQYLWNCK YL++ASRIILATDGD PG ALAEELARR+GRERCWRV+WPKKN+VD
Sbjct: 326 EEDTKYQYLWNCKEYLEKASRIILATDGDSPGLALAEELARRLGRERCWRVKWPKKNEVD 385
Query: 396 HFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW 455
HFKDANEVLMYLGP ALKEV+ENAELYPI GLFNF YFDEIDAYYH+ G E G++TGW
Sbjct: 386 HFKDANEVLMYLGPDALKEVIENAELYPIQGLFNFSHYFDEIDAYYHQALGFELGVATGW 445
Query: 456 RALNELYNV-LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARK 514
R LN LYNV L + T + SG + L+ I + + VREHARK
Sbjct: 446 RGLNGLYNVSTIFHLLLFTMLVQSGAVDHWGILLERICQ---------KLSGLVREHARK 496
Query: 515 LLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 574
LLEKHIKKPFF+A YG S ERM++EEFE GK WLS TF LIRCENDSLP+IKWVLDLAKA
Sbjct: 497 LLEKHIKKPFFDAGYGESIERMSIEEFELGKKWLSETFYLIRCENDSLPNIKWVLDLAKA 556
Query: 575 AVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH 634
AVLRHGVRGLVIDPYNELDHQRP +QTETEYVSQMLT++KRFAQHH+CHVWFVAHPRQLH
Sbjct: 557 AVLRHGVRGLVIDPYNELDHQRPANQTETEYVSQMLTIIKRFAQHHSCHVWFVAHPRQLH 616
Query: 635 NWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA 694
+W G PPN+YDISGSAHFINKCDNGIVIHRNR+P+AGP+D+VQVCVRKVRNKV+GT G+A
Sbjct: 617 HWDGGPPNMYDISGSAHFINKCDNGIVIHRNRNPDAGPVDQVQVCVRKVRNKVIGTTGDA 676
Query: 695 FLSYNRVTGEYMDI 708
FLSY+R+TG Y D+
Sbjct: 677 FLSYDRITGVYTDV 690
>gi|242093886|ref|XP_002437433.1| hypothetical protein SORBIDRAFT_10g026990 [Sorghum bicolor]
gi|241915656|gb|EER88800.1| hypothetical protein SORBIDRAFT_10g026990 [Sorghum bicolor]
Length = 770
Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/644 (64%), Positives = 497/644 (77%), Gaps = 32/644 (4%)
Query: 84 PLTLRTKDLSSVSYRNHPTPTSETEEKMLDSRSWEILKIKLKQLGLDIGRCAPGVENRML 143
P LR++++ S + N+ + E +++ KLK G++ + G RML
Sbjct: 83 PTPLRSRNVHSAN--NYAAASEERLGQLIQ---------KLKNEGINPKQWRLGNFQRML 131
Query: 144 CPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSL------- 196
CP+CNGG SEELSLS+++ +DG +A W CFR+KCGW+G A N SQ
Sbjct: 132 CPQCNGGSSEELSLSVYIRKDGMNATWNCFRSKCGWRGFIQADGVTNISQGKTDIESETD 191
Query: 197 ----KKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVI 252
K + K R++ E+ L LEPL +EL YF+ R+ISAETLRRN+VMQ+ +++ I
Sbjct: 192 QEVESKKTANKVYRKVIEEDLNLEPLCDELVEYFSTRMISAETLRRNKVMQRNWNNKISI 251
Query: 253 AFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAG 312
AF Y R+G LV CKYR +K F QE +TEK+FYGLDDI+ D+IIVEGE+DKLSM+EAG
Sbjct: 252 AFTYRRDGVLVGCKYRAVDKTFSQEPNTEKIFYGLDDIKRAHDVIIVEGEIDKLSMDEAG 311
Query: 313 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 372
+ NCVSVPDGAP VS K +P +EQD KY YLWNCK YL ASRIILATD D PGQALAE
Sbjct: 312 YRNCVSVPDGAPPKVSSK-IPDKEQDKKYNYLWNCKDYLDSASRIILATDDDGPGQALAE 370
Query: 373 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRD 432
ELARR+G+ERCWRV+WPKKND D KDANEVLM+LGP AL++V+E+AELYPI GLF+F+D
Sbjct: 371 ELARRLGKERCWRVKWPKKNDTDTCKDANEVLMFLGPQALRKVIEDAELYPIRGLFSFKD 430
Query: 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYN---------VLPGELTIVTGVPNSGKSEW 483
+F EID Y+ GDE GI TGW++L++LY V+PGELT+VTGVPNSGKSEW
Sbjct: 431 FFPEIDNYFLGIHGDELGIHTGWKSLDDLYKYHLNRLTWLVVPGELTVVTGVPNSGKSEW 490
Query: 484 IDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 543
IDAL+CNIN GWKFVLCSMENKV+EHARKLLEK I KPFF+A YGG A+RMT ++FE
Sbjct: 491 IDALLCNINTQCGWKFVLCSMENKVKEHARKLLEKRIGKPFFDARYGGDAQRMTPDDFEA 550
Query: 544 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 603
GK WL+ TF LIRCE+DSLPSI WVLDLAKAAVLRHGVRGLVIDPYNELDHQRP +QTET
Sbjct: 551 GKEWLNETFHLIRCEDDSLPSINWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPSNQTET 610
Query: 604 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 663
EYVSQ+LT VKRFAQHH+CHVWFVAHPRQLHNW G PPN+YDISGSAHFINKCDNGIVIH
Sbjct: 611 EYVSQILTKVKRFAQHHSCHVWFVAHPRQLHNWNGGPPNMYDISGSAHFINKCDNGIVIH 670
Query: 664 RNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 707
RNRD AGP+D VQVCVRKVRNKV+G IG+AFL+Y+RVTG+Y D
Sbjct: 671 RNRDQNAGPLDVVQVCVRKVRNKVIGQIGDAFLTYDRVTGQYKD 714
>gi|30692010|ref|NP_849735.1| toprim domain-containing protein [Arabidopsis thaliana]
gi|209529811|gb|ACI49800.1| At1g30680 [Arabidopsis thaliana]
gi|332193138|gb|AEE31259.1| toprim domain-containing protein [Arabidopsis thaliana]
Length = 709
Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/633 (63%), Positives = 498/633 (78%), Gaps = 13/633 (2%)
Query: 80 NNHHPLTLRTKDLSSV-SYRNHPTPTS---ETEEKMLDSRSWEILKIKLKQLGLDIGRCA 135
+ + P RT LSS S PTP E +++++ SR L+ KL + G+D C
Sbjct: 69 SKNSPYYQRTNGLSSYNSIPRVPTPVDTEVEADKRVVLSR-LVTLRRKLAEQGVDAENCP 127
Query: 136 PGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSS 195
PG + ++CP C GG+S E SLSLF+ DG SA W CFR KCG KG R+
Sbjct: 128 PGQHSGLICPTCEGGNSGEKSLSLFIAPDGSSATWNCFRGKCGLKGGV-------RADGG 180
Query: 196 LKKFSKMKTI-REITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAF 254
L ++ + R+IT + +ELEPL +E++ YFA R IS +TL RNRVMQKR G E+VIAF
Sbjct: 181 LASADPIEKVERKITVEGIELEPLCDEIQDYFAARAISRKTLERNRVMQKRIGDEIVIAF 240
Query: 255 PYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFL 314
YW+ G+LV+CKYR K F+QE+ T ++ YGLDDIE S++IIVEGE+DKL+MEEAGFL
Sbjct: 241 TYWQRGELVSCKYRSLTKMFFQERKTRRILYGLDDIEKTSEVIIVEGEIDKLAMEEAGFL 300
Query: 315 NCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEEL 374
NCVSVPDGAP+ VS K +PSE++DTKY++LWNC YLK+ASRI++ATDGD PGQA+AEE+
Sbjct: 301 NCVSVPDGAPAKVSSKEIPSEDKDTKYKFLWNCNDYLKKASRIVIATDGDGPGQAMAEEI 360
Query: 375 ARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF 434
ARR+G+ERCWRV+WPKK++ +HFKDANEVLM GP LKE + +AE YPI+GLF+F+D+F
Sbjct: 361 ARRLGKERCWRVKWPKKSEDEHFKDANEVLMSKGPHLLKEAILDAEPYPILGLFSFKDFF 420
Query: 435 DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEH 494
DEIDAYY RT G E+G+STGW+ L+ LY+V+PGELT+VTG+PNSGKSEWIDA++CN+N
Sbjct: 421 DEIDAYYDRTHGHEYGVSTGWKNLDNLYSVVPGELTVVTGIPNSGKSEWIDAMLCNLNHS 480
Query: 495 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
GWKF LCSMENKVR+HARKLLEKHIKKPFF+A+YG S +RM+VEE ++GK WL++TF
Sbjct: 481 VGWKFALCSMENKVRDHARKLLEKHIKKPFFDADYGRSVQRMSVEEKDEGKKWLNDTFYP 540
Query: 555 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
IRCE DSLPSI WVL+ AKAAVLR+G+RGLVIDPYNELDHQR QTETEYVSQMLT +K
Sbjct: 541 IRCEMDSLPSIDWVLERAKAAVLRYGIRGLVIDPYNELDHQRTPRQTETEYVSQMLTKIK 600
Query: 615 RFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID 674
RF+QHH+CHVWFVAHP+QL +W G PNLYDISGSAHFINKCDNGI++HRNRD AGP+D
Sbjct: 601 RFSQHHSCHVWFVAHPKQLQHWDGGAPNLYDISGSAHFINKCDNGIIVHRNRDENAGPLD 660
Query: 675 RVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 707
VQ+ VRKVRNKV G IG+A+L Y+R TG Y D
Sbjct: 661 LVQIGVRKVRNKVAGQIGDAYLCYDRTTGSYSD 693
>gi|27311757|gb|AAO00844.1| Unknown protein [Arabidopsis thaliana]
Length = 709
Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/633 (63%), Positives = 498/633 (78%), Gaps = 13/633 (2%)
Query: 80 NNHHPLTLRTKDLSSV-SYRNHPTPTS---ETEEKMLDSRSWEILKIKLKQLGLDIGRCA 135
+ + P RT LSS S PTP E +++++ SR L+ KL + G+D C
Sbjct: 69 SKNSPYYQRTNGLSSYNSIPRVPTPVDTEVEADKRVVLSR-LVTLRRKLAEQGVDAENCP 127
Query: 136 PGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSS 195
PG + ++CP C GG+S E SLSLF+ DG SA W CFR KCG KG R+
Sbjct: 128 PGQHSGLICPTCEGGNSGEKSLSLFIAPDGSSATWNCFRGKCGLKGGV-------RADGG 180
Query: 196 LKKFSKMKTI-REITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAF 254
L ++ + R+IT + +ELEPL +E++ YFA R IS +TL RNRVMQKR G E+VIAF
Sbjct: 181 LASADPIEKVERKITVEGIELEPLCDEIQDYFAARAISRKTLERNRVMQKRIGDEIVIAF 240
Query: 255 PYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFL 314
YW+ G+LV+CKYR K F+QE+ T ++ YGLDDIE S++IIVEGE+DKL+MEEAGFL
Sbjct: 241 TYWQRGELVSCKYRSLTKMFFQERKTRRILYGLDDIEKTSEVIIVEGEIDKLAMEEAGFL 300
Query: 315 NCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEEL 374
NCVSVPDGAP+ VS K +PSE++DTKY++LWNC YLK+ASRI++ATDGD PGQA+AEE+
Sbjct: 301 NCVSVPDGAPAKVSSKEIPSEDKDTKYKFLWNCNDYLKKASRIVIATDGDGPGQAMAEEI 360
Query: 375 ARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF 434
ARR+G+ERCWRV+WPKK++ +HFKDANEVLM GP LKE + +AE YPI+GLF+F+D+F
Sbjct: 361 ARRLGKERCWRVKWPKKSEDEHFKDANEVLMSKGPHLLKEAILDAEPYPILGLFSFKDFF 420
Query: 435 DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEH 494
DEIDAYY RT G E+G+STGW+ L+ LY+V+PGELT+VTG+PNSGKSEWIDA++CN+N
Sbjct: 421 DEIDAYYDRTHGHEYGVSTGWKNLDNLYSVVPGELTVVTGIPNSGKSEWIDAMLCNLNHS 480
Query: 495 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
GWKF LCSMENKVR+HARKLLEKHIKKPFF+A+YG S +RM+VEE ++GK WL++TF
Sbjct: 481 VGWKFALCSMENKVRDHARKLLEKHIKKPFFDADYGRSVQRMSVEEKDEGKKWLNDTFYP 540
Query: 555 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
IRCE DSLPSI WVL+ AKAAVLR+G+RGLVIDPYNELDHQR QTETEYVSQMLT +K
Sbjct: 541 IRCEMDSLPSINWVLERAKAAVLRYGIRGLVIDPYNELDHQRTPRQTETEYVSQMLTKIK 600
Query: 615 RFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID 674
RF+QHH+CHVWFVAHP+QL +W G PNLYDISGSAHFINKCDNGI++HRNRD AGP+D
Sbjct: 601 RFSQHHSCHVWFVAHPKQLQHWDGGAPNLYDISGSAHFINKCDNGIIVHRNRDENAGPLD 660
Query: 675 RVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 707
VQ+ VRKVRNKV G IG+A+L Y+R TG Y D
Sbjct: 661 LVQIGVRKVRNKVAGQIGDAYLCYDRTTGSYSD 693
>gi|218198730|gb|EEC81157.1| hypothetical protein OsI_24073 [Oryza sativa Indica Group]
gi|222636070|gb|EEE66202.1| hypothetical protein OsJ_22328 [Oryza sativa Japonica Group]
Length = 698
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/626 (64%), Positives = 487/626 (77%), Gaps = 26/626 (4%)
Query: 93 SSVSYRNHPTPTSETEEKMLDSRSWEILKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDS 152
S V+ R+ ++E +K + R ++++ +LK+ G+ + G RM+CPKCNGG +
Sbjct: 64 SPVAVRSRSVHSTENYKKGCEQRLGQLIE-RLKKEGISPKQWRLGTYQRMMCPKCNGGST 122
Query: 153 EELSLSLFLDEDGFSAVWMCFRAKCGWKGSTS-------ALVDNNR----SQSSLKKFSK 201
EE SLS+ + DG +A W CFRA CGWKG + NN Q +
Sbjct: 123 EEPSLSVMIRMDGKNAAWQCFRANCGWKGFVEPDGVLKLSQAKNNTECETDQDGEANLAV 182
Query: 202 MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGK 261
K R+I E+ L LEPL +EL YF+ER+IS ETLRRN VMQ+ +++VIAF Y R+G
Sbjct: 183 NKVYRKICEEDLHLEPLCDELVTYFSERMISPETLRRNSVMQRNWSNKIVIAFTYRRDGV 242
Query: 262 LVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPD 321
LV CKYR+ +KKF QE +TEK+ YGLDDI+ DIIIVEGE+DKLSMEEAG+ NCVSVPD
Sbjct: 243 LVGCKYREVSKKFSQEANTEKILYGLDDIKRARDIIIVEGEIDKLSMEEAGYRNCVSVPD 302
Query: 322 GAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRE 381
GAP VS K +P ++QD KYQYLWNCK YL ASRIILATD DPPGQALAEELARR+G+E
Sbjct: 303 GAPPKVSSK-LPDKDQDKKYQYLWNCKEYLDPASRIILATDADPPGQALAEELARRLGKE 361
Query: 382 RCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYY 441
RCWRV WPKKN+ + KDANEVLM+LGP AL++V+E+AELYPI GLF+F+D+F EID YY
Sbjct: 362 RCWRVNWPKKNENEICKDANEVLMFLGPQALRKVIEDAELYPIRGLFSFKDFFPEIDNYY 421
Query: 442 HRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
GDE G+ TGW++++ELY V+PGELT+VTGVPNSGKSEWIDAL+CNIN
Sbjct: 422 LGIRGDELGVPTGWKSMDELYKVVPGELTVVTGVPNSGKSEWIDALLCNIN--------- 472
Query: 502 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDS 561
++VREHARKLLEK IKKPFF+A YGGSAERM+++EFE+GK WL+ TF LIRCE+D
Sbjct: 473 ----DQVREHARKLLEKRIKKPFFDARYGGSAERMSLDEFEEGKQWLNETFHLIRCEDDC 528
Query: 562 LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHA 621
LPS+ WVL+LAKAAVLR+GVRGLVIDPYNELDHQRP +QTETEYVSQMLT +KRFAQHH+
Sbjct: 529 LPSVNWVLELAKAAVLRYGVRGLVIDPYNELDHQRPSNQTETEYVSQMLTKIKRFAQHHS 588
Query: 622 CHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVR 681
CHVWFVAHPRQLHNW G PPN+YDISGSAHFINKCDNGIVIHRNRDP +GP+D VQVCVR
Sbjct: 589 CHVWFVAHPRQLHNWNGGPPNMYDISGSAHFINKCDNGIVIHRNRDPNSGPLDVVQVCVR 648
Query: 682 KVRNKVVGTIGEAFLSYNRVTGEYMD 707
KVRNKV+G IG+AFLSY RV+GE+ D
Sbjct: 649 KVRNKVIGQIGDAFLSYERVSGEFRD 674
>gi|52076993|dbj|BAD46002.1| unknown protein [Oryza sativa Japonica Group]
gi|52077236|dbj|BAD46279.1| unknown protein [Oryza sativa Japonica Group]
gi|300116969|dbj|BAJ10651.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 695
Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/626 (64%), Positives = 486/626 (77%), Gaps = 29/626 (4%)
Query: 93 SSVSYRNHPTPTSETEEKMLDSRSWEILKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDS 152
S V+ R+ ++E +K + R ++++ +LK+ G+ + G RM+CPKCNGG +
Sbjct: 64 SPVAVRSRSVHSTENYKKGCEQRLGQLIE-RLKKEGISPKQWRLGTYQRMMCPKCNGGST 122
Query: 153 EELSLSLFLDEDGFSAVWMCFRAKCGWKGSTS-------ALVDNNR----SQSSLKKFSK 201
EE SLS+ + DG +A W CFRA CGWKG + NN Q +
Sbjct: 123 EEPSLSVMIRMDGKNAAWQCFRANCGWKGFVEPDGVLKLSQAKNNTECETDQDGEANLAV 182
Query: 202 MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGK 261
K R+I E+ L LEPL +EL YF+ER+IS ETLRRN VMQ+ +++VIAF Y R+G
Sbjct: 183 NKVYRKICEEDLHLEPLCDELVTYFSERMISPETLRRNSVMQRNWSNKIVIAFTYRRDGV 242
Query: 262 LVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPD 321
LV CKYR+ +KKF QE +TEK+ YGLDDI+ DIIIVEGE+DKLSMEEAG+ NCVSVPD
Sbjct: 243 LVGCKYREVSKKFSQEANTEKILYGLDDIKRARDIIIVEGEIDKLSMEEAGYRNCVSVPD 302
Query: 322 GAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRE 381
GAP VS K +P ++Q ASRIILATD DPPGQALAEELARR+G+E
Sbjct: 303 GAPPKVSSK-LPDKDQ----------------ASRIILATDADPPGQALAEELARRLGKE 345
Query: 382 RCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYY 441
RCWRV WPKKN+ + KDANEVLM+LGP AL++V+E+AELYPI GLF+F+D+F EID YY
Sbjct: 346 RCWRVNWPKKNENEICKDANEVLMFLGPQALRKVIEDAELYPIRGLFSFKDFFPEIDNYY 405
Query: 442 HRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
GDE G+ TGW++++ELY V+PGELT+VTGVPNSGKSEWIDAL+CNIN+ GWKFVL
Sbjct: 406 LGIRGDELGVPTGWKSMDELYKVVPGELTVVTGVPNSGKSEWIDALLCNINDQVGWKFVL 465
Query: 502 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDS 561
CSMENKVREHARKLLEK IKKPFF+A YGGSAERM+++EFE+GK WL+ TF LIRCE+D
Sbjct: 466 CSMENKVREHARKLLEKRIKKPFFDARYGGSAERMSLDEFEEGKQWLNETFHLIRCEDDC 525
Query: 562 LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHA 621
LPS+ WVL+LAKAAVLR+GVRGLVIDPYNELDHQRP +QTETEYVSQMLT +KRFAQHH+
Sbjct: 526 LPSVNWVLELAKAAVLRYGVRGLVIDPYNELDHQRPSNQTETEYVSQMLTKIKRFAQHHS 585
Query: 622 CHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVR 681
CHVWFVAHPRQLHNW G PPN+YDISGSAHFINKCDNGIVIHRNRDP +GP+D VQVCVR
Sbjct: 586 CHVWFVAHPRQLHNWNGGPPNMYDISGSAHFINKCDNGIVIHRNRDPNSGPLDVVQVCVR 645
Query: 682 KVRNKVVGTIGEAFLSYNRVTGEYMD 707
KVRNKV+G IG+AFLSY RV+GE+ D
Sbjct: 646 KVRNKVIGQIGDAFLSYERVSGEFRD 671
>gi|297846012|ref|XP_002890887.1| toprim domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297336729|gb|EFH67146.1| toprim domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 774
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/700 (56%), Positives = 483/700 (69%), Gaps = 97/700 (13%)
Query: 80 NNHHPLTLRTKDLSSV-SYRNHPTPTSETEEKMLDSRS----WEILKIKLKQLGLDIGRC 134
+ + P RT LSS S PTP EE D R+ L+ KL + G+D C
Sbjct: 84 SKNSPYYQRTNGLSSYNSISRVPTPVDTEEEA--DKRAVLSRLVTLRRKLAEQGIDAENC 141
Query: 135 APGVENRMLCP---------------------------------------------KCNG 149
PG + ++CP +C G
Sbjct: 142 PPGQSSGLICPTVSISVFLTYLFICQDLSTMWMLLSLMLSVLKKANLDCPLFLWVHQCEG 201
Query: 150 GDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTI-REI 208
G+S E SLSLF+ DG SA W CFR KCG KG R+ L ++ + R+I
Sbjct: 202 GNSGEKSLSLFIAPDGSSATWNCFRGKCGLKGGV-------RADGRLASADPIEKVERKI 254
Query: 209 TEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHE------------------- 249
T + +ELEPL +E++ YFA R IS +TL RNRVMQKR G E
Sbjct: 255 TVEGIELEPLCDEIQDYFAARAISRKTLERNRVMQKRIGDEFRNPDLSSYMIGSSPVCPT 314
Query: 250 --VVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLS 307
+VIAF YW+ G+LV+CKYR K+F+QE++T ++ YGLDDIE S+IIIVEGE+DKL+
Sbjct: 315 LLIVIAFTYWQRGELVSCKYRSLTKRFFQERNTRRILYGLDDIEKTSEIIIVEGEIDKLA 374
Query: 308 MEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPG 367
MEEAGF NCVSVPDGAP+SVS K PSE++ ASRI++ATDGD PG
Sbjct: 375 MEEAGFRNCVSVPDGAPASVSSKETPSEDK----------------ASRIVIATDGDGPG 418
Query: 368 QALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGL 427
QALAEE+ARR+G+ERCWRV+WP+K++ +HFKDANEVLM GP LKE + NAE YPI GL
Sbjct: 419 QALAEEIARRLGKERCWRVKWPEKSEDEHFKDANEVLMSKGPHLLKEAILNAEPYPIRGL 478
Query: 428 FNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDAL 487
F F+D+FDEIDAYYHRT G E+G+STGW+ L+ Y+V+PGELT+VTG+PNSGKSEWIDA+
Sbjct: 479 FPFKDFFDEIDAYYHRTHGHEYGVSTGWKNLDNFYSVVPGELTVVTGIPNSGKSEWIDAM 538
Query: 488 ICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAW 547
+CN+N GWKF LCSMENKVR+H RKLLEKH+KKPFF+A+YG S +RM VEE ++GK W
Sbjct: 539 LCNLNHSVGWKFALCSMENKVRDHGRKLLEKHVKKPFFDADYGRSVQRMNVEELDEGKQW 598
Query: 548 LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVS 607
L++TFSLIRCE DSLPSI+WVL+ AKAAVLR+G+RGLVIDPYNELDHQR QTETEYVS
Sbjct: 599 LNDTFSLIRCEMDSLPSIEWVLERAKAAVLRYGIRGLVIDPYNELDHQRTSRQTETEYVS 658
Query: 608 QMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD 667
QMLT +KRF+QHH+CHVWFVAHP+QL +W G PNLYDISGSAHFINKCDNGI++HRNRD
Sbjct: 659 QMLTKIKRFSQHHSCHVWFVAHPKQLQHWDGGAPNLYDISGSAHFINKCDNGIIVHRNRD 718
Query: 668 PEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 707
+AGP+D VQ+ VRKVRNKV G IG+A+L Y+R TG Y D
Sbjct: 719 EKAGPLDLVQIGVRKVRNKVAGQIGDAYLCYDRATGLYSD 758
>gi|168040643|ref|XP_001772803.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675880|gb|EDQ62370.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 630
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/600 (61%), Positives = 455/600 (75%), Gaps = 10/600 (1%)
Query: 118 EILKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDED-GFSAVWMCFRAK 176
+ +K +L G+ + PG R +CP+C+GG S ELSL++ + E+ G A+W+C RAK
Sbjct: 30 KTVKEQLISKGILLKSYGPGTV-RGICPECDGGSSGELSLAVTIPEEPGTPAIWICHRAK 88
Query: 177 CGWKGS-------TSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAER 229
CGWKGS +S V N + + K + ++ T +SL LE + +++ +YF +R
Sbjct: 89 CGWKGSAWAGPLASSVGVKGNGAFKAAKVTKRPVLKKDYTAESLGLEVVQDKVLSYFKKR 148
Query: 230 LISAETLRRNRVMQK-RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLD 288
+S ET+R+N V Q + ++ IAFPY ++G+++NCK+RD NK+FWQ K+ KV YGLD
Sbjct: 149 GLSEETVRQNNVAQHWANTTDLAIAFPYVQDGEILNCKFRDGNKRFWQVKNAPKVLYGLD 208
Query: 289 DIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCK 348
I+ +I+IVEGE DKL+M EAG +NCVSVPDGAP+ VS +P +D KY+YLWNCK
Sbjct: 209 HIKDSREIVIVEGEFDKLAMYEAGIVNCVSVPDGAPAKVSGDELPPPNEDKKYEYLWNCK 268
Query: 349 MYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLG 408
Y K A+RIILATD D PGQALAEELARR+GRERCWRV WP+ KDANEVLM LG
Sbjct: 269 DYFKNATRIILATDADEPGQALAEELARRLGRERCWRVTWPEDESGKQCKDANEVLMSLG 328
Query: 409 PGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGE 468
P A+K+++++AELYPI GLFNF+ +F EID YY+ GDE G+STGWR L+E+Y V+PGE
Sbjct: 329 PDAVKDLIKSAELYPIRGLFNFQQFFREIDDYYYLRLGDERGVSTGWRGLDEIYRVVPGE 388
Query: 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN 528
LTIVTGVPNSGKSEWIDALICN+N W F LCSMENKVREHARKL+EK+I +PFF+A
Sbjct: 389 LTIVTGVPNSGKSEWIDALICNLNRSKKWTFGLCSMENKVREHARKLIEKYIHQPFFDAP 448
Query: 529 YGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDP 588
Y S RM E+ E+GK WL + F LIR E++ LPS+ WVL+LAKAAV+RHG+RGLVIDP
Sbjct: 449 YANSTPRMDKEDLEKGKKWLQDNFFLIRHEDEELPSVDWVLNLAKAAVMRHGIRGLVIDP 508
Query: 589 YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISG 648
YNELDHQRP +QTETEYVSQMLT +KRFAQHH CHVWFVAHPRQL W GE P LYDISG
Sbjct: 509 YNELDHQRPGNQTETEYVSQMLTKIKRFAQHHDCHVWFVAHPRQLQVWRGEAPGLYDISG 568
Query: 649 SAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708
SAHFINKCDNGIVIHRNRD AGP+D+V+V VRKVRNK GTIGEA L YNRVTG+Y D+
Sbjct: 569 SAHFINKCDNGIVIHRNRDETAGPLDQVKVLVRKVRNKAAGTIGEATLRYNRVTGDYEDV 628
>gi|4587524|gb|AAD25755.1|AC007060_13 T5I8.13 [Arabidopsis thaliana]
Length = 670
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/645 (57%), Positives = 465/645 (72%), Gaps = 54/645 (8%)
Query: 80 NNHHPLTLRTKDLSSV-SYRNHPTPTS---ETEEKMLDSRSWEILKIKLKQLGLDIGRCA 135
+ + P RT LSS S PTP E +++++ SR L+ KL + G+D C
Sbjct: 47 SKNSPYYQRTNGLSSYNSIPRVPTPVDTEVEADKRVVLSR-LVTLRRKLAEQGVDAENCP 105
Query: 136 PGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSS 195
PG + ++CP C GG+S E SLSLF+ DG SA W CFR KCG KG R+
Sbjct: 106 PGQHSGLICPTCEGGNSGEKSLSLFIAPDGSSATWNCFRGKCGLKGGV-------RADGG 158
Query: 196 LKKFSKMKTI-REITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAF 254
L ++ + R+IT + +ELEPL +E++ YFA R IS +TL RNRVMQKR G E+VIAF
Sbjct: 159 LASADPIEKVERKITVEGIELEPLCDEIQDYFAARAISRKTLERNRVMQKRIGDEIVIAF 218
Query: 255 PYWRNGKLVNCKYRDFNKKFWQ------------EKDTEKVFYGLDDIEGESDIIIVEGE 302
YW+ G+LV+CKYR K F+Q E+ T ++ YGLDDIE S++IIVEGE
Sbjct: 219 TYWQRGELVSCKYRSLTKMFFQVHIIQIPFSIADERKTRRILYGLDDIEKTSEVIIVEGE 278
Query: 303 MDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATD 362
+DKL+MEEAGFLNCVSVPDGAP+ VS K +PSE++ ASRI++ATD
Sbjct: 279 IDKLAMEEAGFLNCVSVPDGAPAKVSSKEIPSEDK----------------ASRIVIATD 322
Query: 363 GDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422
GD PGQA+AEE+ARR+G+ERCWRV+WPKK++ +HFKDANEVLM GP LKE + +AE Y
Sbjct: 323 GDGPGQAMAEEIARRLGKERCWRVKWPKKSEDEHFKDANEVLMSKGPHLLKEAILDAEPY 382
Query: 423 PIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSE 482
PI+GLF+F+D+FDEIDAYY RT G E+G+STGW+ L+ LY+V+PGELT+VTG+PNSGKSE
Sbjct: 383 PILGLFSFKDFFDEIDAYYDRTHGHEYGVSTGWKNLDNLYSVVPGELTVVTGIPNSGKSE 442
Query: 483 WIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFE 542
WIDA++CN+N GWKF LCSMENK A + YG S +RM+VEE +
Sbjct: 443 WIDAMLCNLNHSVGWKFALCSMENKPIAGALVI-------------YGRSVQRMSVEEKD 489
Query: 543 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTE 602
+GK WL++TF IRCE DSLPSI WVL+ AKAAVLR+G+RGLVIDPYNELDHQR QTE
Sbjct: 490 EGKKWLNDTFYPIRCEMDSLPSIDWVLERAKAAVLRYGIRGLVIDPYNELDHQRTPRQTE 549
Query: 603 TEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVI 662
TEYVSQMLT +KRF+QHH+CHVWFVAHP+QL +W G PNLYDISGSAHFINKCDNGI++
Sbjct: 550 TEYVSQMLTKIKRFSQHHSCHVWFVAHPKQLQHWDGGAPNLYDISGSAHFINKCDNGIIV 609
Query: 663 HRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 707
HRNRD AGP+D VQ+ VRKVRNKV G IG+A+L Y+R TG Y D
Sbjct: 610 HRNRDENAGPLDLVQIGVRKVRNKVAGQIGDAYLCYDRTTGSYSD 654
>gi|302757125|ref|XP_002961986.1| hypothetical protein SELMODRAFT_164801 [Selaginella moellendorffii]
gi|300170645|gb|EFJ37246.1| hypothetical protein SELMODRAFT_164801 [Selaginella moellendorffii]
Length = 618
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/578 (59%), Positives = 422/578 (73%), Gaps = 8/578 (1%)
Query: 137 GVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDN----NRS 192
G E+R++CP+CNGG + E S SL L ED ++A+W C R+ CG+ G + +N +
Sbjct: 7 GKEHRLICPQCNGGTTYEPSFSLRL-EDEWTAIWKCHRSTCGYHGKANVPHENGSALTKR 65
Query: 193 QSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVI 252
Q + + I E + SL L+PL +++ +FA R IS + L+RNRV Q G E+ I
Sbjct: 66 QMAAAYHWRNPKITEFSRTSLNLQPLSDDVIKWFATRGISQKVLQRNRVEQIYSGSELAI 125
Query: 253 AFPYWRNGKLVNCKYRDF-NKKFWQEKDT-EKVFYGLDDIEGESDIIIVEGEMDKLSMEE 310
AFPY++ K+++CKYR K+FW+ + + FYGL+DI+G +++IVEGEMDKLSMEE
Sbjct: 126 AFPYYKENKIIDCKYRTIPEKRFWKARGAARRTFYGLEDIKGRDEVVIVEGEMDKLSMEE 185
Query: 311 AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQAL 370
AG +NCVSVPDGAP + P E+D K+ YLW+CK + +RI LATD D PG AL
Sbjct: 186 AGIINCVSVPDGAPVKAADGETPDPEEDKKFSYLWDCKEQFGKVTRIFLATDADGPGLAL 245
Query: 371 AEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNF 430
AEELARR GRERCWRV WP D KDANEVL+ LGP AL+EVV +ELYPI GLF F
Sbjct: 246 AEELARRFGRERCWRVNWPVV-DGKQLKDANEVLLTLGPEALREVVAKSELYPIRGLFQF 304
Query: 431 RDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICN 490
++F EID YYH + G STGW+ L+E Y V+PGELTIVTGVPNSGKSEWIDAL+CN
Sbjct: 305 SNFFKEIDDYYHMRVEEAEGASTGWKGLDEYYTVVPGELTIVTGVPNSGKSEWIDALVCN 364
Query: 491 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 550
+N GW F LCSMENKV +HARKL+EKH +KPFFEA Y S R+T EEF G WL N
Sbjct: 365 LNRSKGWSFALCSMENKVTDHARKLIEKHYRKPFFEAKYSNSTPRLTPEEFAAGLEWLDN 424
Query: 551 TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 610
F LIRCEN+ LPS WVLD AKAAV R+G+RGLVIDPYNELDHQR SQTETEYVSQ+L
Sbjct: 425 HFYLIRCENEKLPSADWVLDRAKAAVQRYGIRGLVIDPYNELDHQRSSSQTETEYVSQIL 484
Query: 611 TMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA 670
T +KRFAQHH CHVWFVAHPRQ+ NW G+PPN+YDISGSAHFINKCDNGIV+HRNRD E
Sbjct: 485 TKIKRFAQHHDCHVWFVAHPRQMLNWQGQPPNMYDISGSAHFINKCDNGIVVHRNRDAEK 544
Query: 671 GPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708
GP+D+VQ+ V+KVRNK+ G IGEA L Y+R+ D+
Sbjct: 545 GPLDQVQILVKKVRNKIAGQIGEAVLKYDRLVFVSCDV 582
>gi|302775366|ref|XP_002971100.1| hypothetical protein SELMODRAFT_171959 [Selaginella moellendorffii]
gi|300161082|gb|EFJ27698.1| hypothetical protein SELMODRAFT_171959 [Selaginella moellendorffii]
Length = 618
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/578 (59%), Positives = 422/578 (73%), Gaps = 8/578 (1%)
Query: 137 GVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDN----NRS 192
G E+R++CP+CNGG + E S SL L ED ++A+W C R+ CG+ G + +N +
Sbjct: 7 GKEHRLICPQCNGGTTYEPSFSLRL-EDEWTAIWKCHRSTCGYHGKANVPHENGSALTKR 65
Query: 193 QSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVI 252
Q + + I E + SL L+PL +++ +FA R IS + L+RNRV Q G E+ I
Sbjct: 66 QMAAAYHWRNPKITEFSRTSLNLQPLSDDVIKWFATRGISQKVLQRNRVEQIYSGSELAI 125
Query: 253 AFPYWRNGKLVNCKYRDF-NKKFWQEKDT-EKVFYGLDDIEGESDIIIVEGEMDKLSMEE 310
AFPY++ K+++CKYR K+FW+ + + FYGL+DI+G +++IVEGEMDKLSMEE
Sbjct: 126 AFPYYKENKIIDCKYRTIPEKRFWKARGAARRTFYGLEDIKGRDEVVIVEGEMDKLSMEE 185
Query: 311 AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQAL 370
AG +NCVSVPDGAP + P E+D K+ YLW+CK + +RI LATD D PG AL
Sbjct: 186 AGIINCVSVPDGAPVKAADGETPDPEEDKKFSYLWDCKEQFGKVTRIFLATDADGPGLAL 245
Query: 371 AEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNF 430
AEELARR GRERCWRV WP D KDANEVL+ LGP AL+EV+ +ELYPI GLF F
Sbjct: 246 AEELARRFGRERCWRVNWPVV-DGKQLKDANEVLLTLGPEALREVIAKSELYPIRGLFQF 304
Query: 431 RDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICN 490
++F EID YYH + G STGW+ L+E Y V+PGELTIVTGVPNSGKSEWIDAL+CN
Sbjct: 305 SNFFKEIDDYYHMRVEEAEGASTGWKGLDEYYTVVPGELTIVTGVPNSGKSEWIDALVCN 364
Query: 491 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 550
+N GW F LCSMENKV +HARKL+EKH +KPFFEA Y S R+T EEF G WL N
Sbjct: 365 LNRSKGWSFALCSMENKVTDHARKLIEKHYRKPFFEAKYSNSTPRLTPEEFAAGLEWLDN 424
Query: 551 TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 610
F LIRCEN+ LPS WVLD AKAAV R+G+RGLVIDPYNELDHQR SQTETEYVSQ+L
Sbjct: 425 HFYLIRCENEKLPSADWVLDRAKAAVQRYGIRGLVIDPYNELDHQRSSSQTETEYVSQIL 484
Query: 611 TMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA 670
T +KRFAQHH CHVWFVAHPRQ+ NW G+PPN+YDISGSAHFINKCDNGIV+HRNRD E
Sbjct: 485 TKIKRFAQHHDCHVWFVAHPRQMLNWQGQPPNMYDISGSAHFINKCDNGIVVHRNRDAEK 544
Query: 671 GPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708
GP+D+VQ+ V+KVRNK+ G IGEA L Y+R+ D+
Sbjct: 545 GPLDQVQILVKKVRNKIAGQIGEAVLKYDRLVFVSCDV 582
>gi|384251819|gb|EIE25296.1| DNA primase core, partial [Coccomyxa subellipsoidea C-169]
Length = 599
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/607 (55%), Positives = 420/607 (69%), Gaps = 26/607 (4%)
Query: 120 LKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGW 179
++ L G+ + + APG + + CPKCNGG S E S SL + +D SA W+C R CGW
Sbjct: 2 IRDNLVSAGIILKQYAPGQHSGLTCPKCNGGPSAEKSFSLHISDDSQSATWICHRGTCGW 61
Query: 180 KGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRN 239
G + + ++ ++ +K K D L+PL E+ YFA+R IS TL RN
Sbjct: 62 AGGCNV---SGQTSTAERKVEAAKR-----PDCSRLQPLSREVVEYFAQRGISRATLERN 113
Query: 240 RVMQK---RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEK--DTEKVFYGLDDIEGES 294
V Q+ +H IAFPY+R+G+++N KYR +KKFWQ ++ YGLDD++ +
Sbjct: 114 GVQQEYSSKHNTNA-IAFPYYRDGEIINIKYRTLDKKFWQASIFTPIRILYGLDDVKSSA 172
Query: 295 DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA 354
+IIIVEGEMDKL+++EAG N +SVPDGAP +V + ++P E DTK+QYLWNC+ L QA
Sbjct: 173 EIIIVEGEMDKLALDEAGIRNVISVPDGAPRAVKEGDLPPPEADTKFQYLWNCRAVLDQA 232
Query: 355 SRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVD------------HFKDANE 402
RI+LATD D PGQALAEELARR+GR+RCWRVRWP + KDANE
Sbjct: 233 VRIVLATDSDAPGQALAEELARRLGRDRCWRVRWPSEPSSTPPDAGDQGAASVARKDANE 292
Query: 403 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY 462
VL+ GP L+ ++ A+ YPI GLF F D+ DEI + Y G+STGW L+ Y
Sbjct: 293 VLLKDGPEPLQALIRGADPYPIRGLFKFSDFLDEIWSMYDEQDAMGQGVSTGWSGLDNYY 352
Query: 463 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 522
V+PGEL+IVTGVPNSGKSEWIDAL+CN+ GW F +CSME KV++HAR+LLEK+I K
Sbjct: 353 RVVPGELSIVTGVPNSGKSEWIDALLCNLATQHGWSFAMCSMEKKVKDHARQLLEKYIGK 412
Query: 523 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR 582
PF +A Y G A RM ++ E+G WL F ++RCE+D LPS+ WVL LA+AAVLR+G+R
Sbjct: 413 PFLDAKYAGKAARMEAQDVEEGLQWLEERFHVVRCEDDELPSVDWVLGLARAAVLRYGIR 472
Query: 583 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN 642
GLVIDPYNELDHQRPV ETEYVSQMLT +KRFAQH+ HVWFVAHPRQL W GEPPN
Sbjct: 473 GLVIDPYNELDHQRPVHMNETEYVSQMLTKIKRFAQHNDVHVWFVAHPRQLQGWKGEPPN 532
Query: 643 LYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVT 702
LYDISGSAHFINK DNGIVIHRNRDPE G ++ V+V VRKVRNK GTIG+ L Y+R T
Sbjct: 533 LYDISGSAHFINKADNGIVIHRNRDPEQGALNHVKVLVRKVRNKAAGTIGDCILDYDRTT 592
Query: 703 GEYMDIV 709
G Y D++
Sbjct: 593 GRYKDVL 599
>gi|145347669|ref|XP_001418285.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578514|gb|ABO96578.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 592
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/588 (53%), Positives = 403/588 (68%), Gaps = 22/588 (3%)
Query: 136 PGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSS 195
PG ++R++CP CNGG + E SL++ +++DG SA WMC RA C W G T S+ +
Sbjct: 12 PG-QHRIICPTCNGGSTGERSLAVHVEDDGKSAAWMCHRANCEWSGGTGMDGRTRASKGA 70
Query: 196 LKKFSKMKTIREITEDSLELEPLG-NELRA-------YFAERLISAETLRRNRVMQKR-- 245
S + + +L+ +G E+ A R IS ET RN + +
Sbjct: 71 DGATSNRRVAKPKLPAPEDLQRIGPGEMTAAATKWAEMLKSRGISLETAERNGLAVQSVY 130
Query: 246 ----HGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 301
G+ + FPY R+G+L+N KYR +K FWQ K EK+ YGLDD+ GE ++I+VEG
Sbjct: 131 SPIASGYVDALCFPYMRDGELINIKYRGPDKTFWQVKGAEKILYGLDDVTGEEEVILVEG 190
Query: 302 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 361
EMDKL++EEAGF N VSVPDGAP V P+ E+D KY+YLWNC+ L SR ++AT
Sbjct: 191 EMDKLALEEAGFKNVVSVPDGAPGKVKDGPTPAPEEDKKYEYLWNCRAQLDTISRFVIAT 250
Query: 362 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 421
D D PGQAL+EELARR+G+ERCWRV WP + KDANE L G ++E + AE
Sbjct: 251 DSDGPGQALSEELARRLGKERCWRVTWP-----EGCKDANEALQKEGADVVRECLTTAEG 305
Query: 422 YPIMGLFNFRDYFDEIDAYYHRTSGDEF-GISTGWRALNELYNVLPGELTIVTGVPNSGK 480
+P+ GLF F ++ EI++Y++ T+ +E G+STGWR ++ Y ++PGELT+VTGVPNSGK
Sbjct: 306 FPLRGLFRFSEFAPEIESYFNMTTANELRGVSTGWRNIDNNYRIVPGELTVVTGVPNSGK 365
Query: 481 SEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540
SEW+DAL+CN+ GW F LCS+ENKV EHARKL+EK++ +P+FE Y A RM +
Sbjct: 366 SEWVDALMCNLAVQHGWSFALCSLENKVHEHARKLVEKYVGEPWFEGKYS-KAPRMNPDT 424
Query: 541 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
G WL+ F LIR E+D LPS+ W+L LA+AAVLRHG+RGL+IDPYNELDH+RP Q
Sbjct: 425 MRSGMKWLNEHFVLIRHEDDELPSVDWILGLARAAVLRHGIRGLLIDPYNELDHKRPTGQ 484
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGI 660
TETEYVSQMLT +KRFAQH+ HVWFVAHPRQLHNW GE P LYDISGSAHFINKCDNGI
Sbjct: 485 TETEYVSQMLTRIKRFAQHYDVHVWFVAHPRQLHNWKGEAPGLYDISGSAHFINKCDNGI 544
Query: 661 VIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708
V+HRNRD + G + V + V+KVRNKV G+IG+ L YN G Y+DI
Sbjct: 545 VVHRNRDEKLGSLREVTINVQKVRNKVAGSIGDPKLEYNVSNGRYVDI 592
>gi|255081288|ref|XP_002507866.1| predicted protein [Micromonas sp. RCC299]
gi|226523142|gb|ACO69124.1| predicted protein [Micromonas sp. RCC299]
Length = 622
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 313/601 (52%), Positives = 399/601 (66%), Gaps = 18/601 (2%)
Query: 115 RSWEILKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFR 174
RS L+ L + G+ + PG ++R++CP C GG + E SL++ +D+DG S WMC R
Sbjct: 32 RSPIALRDVLLEKGIVLTSYTPG-QHRIVCPSCGGGSTAERSLAVHVDDDGASCQWMCHR 90
Query: 175 AKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAE 234
A C W G K +++ + +L E + R IS E
Sbjct: 91 ATCEWTGGARR---RGSGAGGAPKLPAPESLERVGPGALTDN--AKEWADWLVSRGISLE 145
Query: 235 TLRRNRVMQKR------HGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLD 288
RN V +R H + FPY R+G+LVN KYR +K FWQ K EK+ +GLD
Sbjct: 146 VAERNGVAAQRVFSPAAGEHVNALVFPYMRDGELVNIKYRGSDKSFWQIKGAEKIMFGLD 205
Query: 289 DIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCK 348
DI G S+I+IVEGEMDKL++E+AG N VSVPDGAP V ++P+ E+D K++YLWNC+
Sbjct: 206 DIAGSSEIVIVEGEMDKLALEQAGIKNVVSVPDGAPGKVRDGDLPAPEEDRKFEYLWNCR 265
Query: 349 MYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLG 408
L SRI++A D D PG ALAEELARR+G+ERC+RV WP+ KDAN+VL G
Sbjct: 266 AALDPVSRIVIAVDSDGPGLALAEELARRLGKERCYRVTWPEG-----CKDANDVLQKEG 320
Query: 409 PGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-GISTGWRALNELYNVLPG 467
A++ ++NAE +P+ GLF F D+ D+I Y+ + E G+STGWR+++ Y +PG
Sbjct: 321 DAAVRGSIDNAEGFPLRGLFRFSDFQDDISNYFGVSEASEMKGVSTGWRSIDGHYRPVPG 380
Query: 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 527
ELT+VTGVPNSGKSEW+DAL+CN+ GW F LCS+ENKV EHARKL+EK+ +P+FE
Sbjct: 381 ELTVVTGVPNSGKSEWVDALMCNLAVQHGWTFALCSLENKVHEHARKLVEKYTGEPWFEG 440
Query: 528 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 587
YGG RM E G WL N F LIR E+D LPS+ W++ LA+AAV+RHG+RGL+ID
Sbjct: 441 KYGGKKARMRPETMRAGLHWLDNQFVLIRHEDDELPSVDWIIGLARAAVMRHGIRGLLID 500
Query: 588 PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDIS 647
PYNELDH+RP QTETEYVSQMLT +KRFAQH+ HVWFVAHPRQLHNW GE P LYDIS
Sbjct: 501 PYNELDHKRPQGQTETEYVSQMLTRIKRFAQHYDVHVWFVAHPRQLHNWRGEAPGLYDIS 560
Query: 648 GSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 707
GSAHFINKCDNGIV+HRNRD + G + V + V KVRNKV G IG+ L YN G Y D
Sbjct: 561 GSAHFINKCDNGIVVHRNRDEKLGSLREVTIHVAKVRNKVAGAIGDPKLEYNLTNGRYED 620
Query: 708 I 708
+
Sbjct: 621 L 621
>gi|308805352|ref|XP_003079988.1| toprim domain-containing protein (ISS) [Ostreococcus tauri]
gi|116058445|emb|CAL53634.1| toprim domain-containing protein (ISS) [Ostreococcus tauri]
Length = 699
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 321/622 (51%), Positives = 413/622 (66%), Gaps = 22/622 (3%)
Query: 103 PTSETEEKMLDSRSWEILKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLD 162
P +E E +S L+ L G+ + PG ++R++CP CNGG + E SL++ ++
Sbjct: 85 PDAEGEYAAQESTGPPGLRDALMDQGIVLQSYTPG-QHRIICPTCNGGSTGERSLAVHIE 143
Query: 163 EDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELE------ 216
+DG SA W C RA C W G TS S+ + S + + D +L+
Sbjct: 144 DDGKSAAWCCHRANCEWTGGTSKEGRQRASKGADGAASNRRVAKPKLPDPADLQRIGPGN 203
Query: 217 --PLGNELRAYFAERLISAETLRRNRVMQKR------HGHEVVIAFPYWRNGKLVNCKYR 268
P + + R IS E RN + + G+ + FPY R+G+L+N KYR
Sbjct: 204 MTPAATKWSEFLKSRGISLEVAERNGLAVQNVYSPPASGYVDALCFPYMRDGELINIKYR 263
Query: 269 DFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS 328
+K FWQ K EK+ YGLDD+ GE ++IIVEGEMDKL++E AGF N VSVPDGAP V
Sbjct: 264 GPDKSFWQVKGAEKILYGLDDVAGEEEVIIVEGEMDKLALEMAGFRNVVSVPDGAPGKVK 323
Query: 329 KKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRW 388
+PS E D KY+YLWNC+ L SR ++ATD D PG+AL+EELARR+G+ERCWRV W
Sbjct: 324 DGALPSPEDDRKYEYLWNCRAQLDTISRFVIATDSDGPGRALSEELARRLGKERCWRVTW 383
Query: 389 PKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDE 448
P + KDANE L G ++E + AE +P+ GLF F ++ EI++Y++ T+ +E
Sbjct: 384 P-----EGCKDANEALQKEGVETVRESLSTAEGFPLRGLFRFSEFAPEIESYFNMTTANE 438
Query: 449 F-GISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507
G+STGWR ++ Y V+PGELT+VTGVPNSGKSEW+DAL+CN+ GW F LCS+ENK
Sbjct: 439 LRGVSTGWRNIDNHYRVVPGELTVVTGVPNSGKSEWVDALMCNLAVQHGWSFALCSLENK 498
Query: 508 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 567
V EHARKL+EK++ +P+FE Y A RM + G WL+ F LIR E+D LPS+ W
Sbjct: 499 VHEHARKLVEKYVGEPWFEGKYS-KAPRMNPDSMRTGMKWLNEHFVLIRHEDDELPSVDW 557
Query: 568 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 627
+L LA+AAVLRHG+RGL+IDPYNELDH+RP QTETEYVSQMLT +KRFAQH+ HVWFV
Sbjct: 558 ILGLARAAVLRHGIRGLLIDPYNELDHKRPTGQTETEYVSQMLTRIKRFAQHYDVHVWFV 617
Query: 628 AHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKV 687
AHPRQLHNW GE P LYDISGSAHFINKCDNGIV+HRNRD + G + V V V+KVRNKV
Sbjct: 618 AHPRQLHNWKGECPGLYDISGSAHFINKCDNGIVVHRNRDEKLGSLREVTVNVQKVRNKV 677
Query: 688 VGTIGEAFLSYNRVTGEYMDIV 709
G+IGE L YN G Y+D+V
Sbjct: 678 AGSIGEPKLEYNVANGRYVDVV 699
>gi|449435922|ref|XP_004135743.1| PREDICTED: uncharacterized protein LOC101219062 [Cucumis sativus]
Length = 512
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 322/541 (59%), Positives = 363/541 (67%), Gaps = 119/541 (21%)
Query: 167 SAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYF 226
+AVW CFR KCGWKG T LVD YF
Sbjct: 79 AAVWNCFRGKCGWKGHT-LLVD------------------------------------YF 101
Query: 227 AERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYG 286
AERLIS +TL RN VMQKR +++ +AF Y+R G L++CKYRD NKKFWQE +TE++FYG
Sbjct: 102 AERLISKQTLLRNSVMQKRSDNQIAVAFTYYRGGALISCKYRDANKKFWQEPNTERIFYG 161
Query: 287 LDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 346
+DDI+G SDIIIVEGEMDKLSM EAG NCVSVPDGAP+SVS+K+VP ++D K+Q+LWN
Sbjct: 162 IDDIDGASDIIIVEGEMDKLSMAEAGIHNCVSVPDGAPASVSEKDVPPADKDKKFQFLWN 221
Query: 347 CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY 406
CK YL +ASRIILATDGD PGQALAEE+ARRVGRERCWRV+WPKKN+VDHFKDANEV +
Sbjct: 222 CKDYLNKASRIILATDGDTPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEVGIT 281
Query: 407 LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP 466
D++ Y D+ IS V+P
Sbjct: 282 ----------------------------DQLSFCYLHFFLDDVIISL----------VVP 303
Query: 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 526
GELTIVTGVPNSGKSEWIDAL+CN+N AGWKF LCSMENKVREH RKLLEKHIKKPFF
Sbjct: 304 GELTIVTGVPNSGKSEWIDALLCNLNASAGWKFALCSMENKVREHGRKLLEKHIKKPFFV 363
Query: 527 ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVI 586
YGGS ER++ EE EQGK WL +TF L+R
Sbjct: 364 GRYGGSVERLSDEELEQGKQWLDDTFFLLR------------------------------ 393
Query: 587 DPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDI 646
TETEYVSQMLT VKRFAQHH CHVWFVAHPRQL NW G PPN+YDI
Sbjct: 394 --------------TETEYVSQMLTKVKRFAQHHGCHVWFVAHPRQLQNWSGSPPNMYDI 439
Query: 647 SGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
SGSAHFINKCDNGIVIHRNRDPE+GPID VQVCVRKVRNKV GTIGEA+L YNRVTGE++
Sbjct: 440 SGSAHFINKCDNGIVIHRNRDPESGPIDLVQVCVRKVRNKVAGTIGEAYLEYNRVTGEFL 499
Query: 707 D 707
D
Sbjct: 500 D 500
>gi|303285780|ref|XP_003062180.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456591|gb|EEH53892.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 597
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 312/593 (52%), Positives = 396/593 (66%), Gaps = 30/593 (5%)
Query: 136 PGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTS-------ALVD 188
PG ++R CP C GG E SL++ +++DG SA WMC RA C W G TS D
Sbjct: 6 PG-QHRTACPMCGGGSGGERSLAVRIEDDGHSAAWMCHRATCEWTGGTSMDDTMSRPRRD 64
Query: 189 NNRSQSSLKKFSKMKTIREITEDSLELEPLGN------ELRAYFAERLISAETLRRNRVM 242
N+ + + P GN E + AER IS + RN +
Sbjct: 65 NSDRNKGFDGAGGAGGGGLTNAAAFRIGPGGNLTDAAAEWGEFLAERGISLDVAERNGLA 124
Query: 243 QKR----HGHEVV--IAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDI 296
+R EVV + FPY R+G+LVN KYR +K FWQ K EK+ +GLDD+ G+ ++
Sbjct: 125 AQRVFSPAAGEVVDALVFPYMRDGELVNIKYRGPDKTFWQVKGAEKIMFGLDDVVGQREM 184
Query: 297 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 356
IIVEGEMDKL++E+AG N VSVPDGAP V + ++P+ E+D K++YLWNC+ L SR
Sbjct: 185 IIVEGEMDKLALEQAGIKNVVSVPDGAPGKVREGDLPAPEEDRKFEYLWNCRAALDPVSR 244
Query: 357 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVV 416
I+LA D D PG ALAEELARR+G+ERC+RV +P+ KDAN+ L G AL+ +
Sbjct: 245 IVLAVDDDAPGIALAEELARRLGKERCYRVAFPEG-----CKDANDTLREHGEAALRGCI 299
Query: 417 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-GISTGWRALNELYNVLPGELTIVTGV 475
+NAE +P+ GLF F D+ D+I +Y+ G E G+S+GW+++++ Y V+PGELT+VTGV
Sbjct: 300 DNAEGFPLRGLFRFSDFDDDISSYFGVDEGSEMKGVSSGWKSVDQHYRVVPGELTVVTGV 359
Query: 476 PNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 535
PNSGKSEW+DAL+CN+ GW F LCSMENK HARKL+EK+ +P+FE Y A R
Sbjct: 360 PNSGKSEWVDALMCNLAVQHGWTFALCSMENK---HARKLVEKYTGEPWFEGKYTNKA-R 415
Query: 536 MTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQ 595
M E G WL N F LIR E+D LPS+ W+L LA+AAV+RHG+RGL+IDPYNELDH+
Sbjct: 416 MRPETMRAGLHWLDNQFVLIRHEDDELPSVDWILGLARAAVMRHGIRGLLIDPYNELDHK 475
Query: 596 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINK 655
RP QTETEYVSQMLT +K+FAQH+ HVWFVAHPRQLHNW GE P LYDISGSAHFINK
Sbjct: 476 RPQGQTETEYVSQMLTRIKKFAQHYDVHVWFVAHPRQLHNWRGEAPGLYDISGSAHFINK 535
Query: 656 CDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708
CDNGIV+HRNRD + G + V V V KVRNKV G+IG+ L YN G Y D+
Sbjct: 536 CDNGIVVHRNRDEKLGSLREVTVMVAKVRNKVAGSIGDPKLEYNLSNGRYEDL 588
>gi|412993299|emb|CCO16832.1| predicted protein [Bathycoccus prasinos]
Length = 934
Score = 606 bits (1562), Expect = e-170, Method: Compositional matrix adjust.
Identities = 310/608 (50%), Positives = 401/608 (65%), Gaps = 43/608 (7%)
Query: 136 PGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGW-------------KGS 182
PG ++R +CP+CNGG E SL++ ++ G AV++C RA C W KGS
Sbjct: 320 PG-QHREMCPQCNGGSGGERSLAVRIEPGGRQAVYVCHRATCEWSGAADLDFVPGKAKGS 378
Query: 183 TSA------------LVDNNRSQSSLKK--FSKMKTIREITEDSLELEPLGNELRAYFAE 228
+SA + N ++ LKK K + ++ + +L+ E
Sbjct: 379 SSAQGGKSSSSNTATNTNTNNQRTILKKPNLPKPEDLKRVGPGALDES--AKPWAEMIEE 436
Query: 229 RLISAETLRRNRVMQK------RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK 282
R IS E RN V + H + FPY R+G++VN KYR NK FWQ K EK
Sbjct: 437 RGISLEVAERNGVAVQSVFSPIEGKHVDALVFPYVRDGQIVNAKYRGPNKSFWQVKGAEK 496
Query: 283 VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 342
V YGLDD +IIIVEGE DKL+ EEAG+ N VSVPDGAP V + +VP+ E D KY+
Sbjct: 497 VLYGLDDCIDCEEIIIVEGEFDKLAFEEAGYTNVVSVPDGAPGKVKEGDVPNPEDDKKYE 556
Query: 343 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 402
YLWNC+ L R ++ATD D PG+ALAEELARR+G+ERC+ V WP + KDANE
Sbjct: 557 YLWNCRAQLDTVKRFVIATDSDGPGKALAEELARRLGKERCFTVNWP-----EGCKDANE 611
Query: 403 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-GISTGWRALNEL 461
L G +++ + +AE +P+ GLF F D+ +I+ Y++ +G E G+STGWR++++
Sbjct: 612 TLQSGGVELIRDSISSAEGFPLRGLFKFADFSGDIEQYFNMDAGSELRGVSTGWRSVDKH 671
Query: 462 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIK 521
Y V+PGELT+VTGVPNSGKSEW+DAL+ N+ GW F LCS+ENKV EHARKL+EK++
Sbjct: 672 YRVVPGELTVVTGVPNSGKSEWVDALMSNLAVQHGWTFALCSLENKVHEHARKLVEKYVG 731
Query: 522 KPFFEAN-YGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG 580
+P+F+ Y A+RM + ++G WL++ F LIR E+D LPS+ W+L LA+AAVLRHG
Sbjct: 732 EPWFDTTTYAKGAQRMNPQTMKRGMRWLNDHFVLIRHEDDELPSVDWILGLARAAVLRHG 791
Query: 581 VRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP 640
+RGL+IDPYNELDH+RP QTETEYVSQMLT +KRFAQH+ HVWFVAHPRQLHNW GE
Sbjct: 792 IRGLLIDPYNELDHKRPTGQTETEYVSQMLTRIKRFAQHYDVHVWFVAHPRQLHNWKGEM 851
Query: 641 PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNR 700
P LYDISGSAHFINKCDNGIVIHRNRD + G + V V + KVRNKV G+IG+ L YN
Sbjct: 852 PGLYDISGSAHFINKCDNGIVIHRNRDEKMGSLREVTVNLAKVRNKVAGSIGDPKLEYNV 911
Query: 701 VTGEYMDI 708
G Y D+
Sbjct: 912 RNGRYEDL 919
>gi|297740895|emb|CBI31077.3| unnamed protein product [Vitis vinifera]
Length = 460
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 243/387 (62%), Positives = 291/387 (75%), Gaps = 2/387 (0%)
Query: 79 NNNHHPLTLRTKDLSSVSYRNHPTPT-SETEEKMLDSRS-WEILKIKLKQLGLDIGRCAP 136
N+ P++L+T L S+ P P SE E +S + +LK KL+ +G D
Sbjct: 68 NSRILPISLKTFALPYTSHSKVPGPVYSENPEDTSNSSARLNVLKKKLEVIGFDTQMLKI 127
Query: 137 GVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSL 196
G + + CP C GGDS E SLSLF+ DG AVW+C + KCGW+G+ A V+++ S L
Sbjct: 128 GHYSHLTCPTCKGGDSMEKSLSLFITLDGDYAVWVCHQGKCGWRGNIRAFVNDSSSYGRL 187
Query: 197 KKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPY 256
+ +K+K REITE SL L+PL +EL AYF ER+IS +TL RN VMQK +G + +IAF Y
Sbjct: 188 NQITKIKPKREITEKSLGLKPLCSELVAYFGERMISEKTLARNSVMQKTYGDQFIIAFTY 247
Query: 257 WRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 316
RNG LV+CKYRD NK FWQEKDTEK+FYG+DDI+ SDIIIVEGE+DKLSMEEAGF NC
Sbjct: 248 RRNGVLVSCKYRDVNKNFWQEKDTEKIFYGVDDIKEASDIIIVEGEIDKLSMEEAGFYNC 307
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
VSVPDGAP SVS K SEE+D KYQYLWNCK YL++ASRIILATDGD PG ALAEELAR
Sbjct: 308 VSVPDGAPPSVSTKVFESEEKDIKYQYLWNCKEYLEKASRIILATDGDAPGLALAEELAR 367
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 436
R+GRERCW+V+WPKKN+V+HFKDANEVLMYLGP LK+V+ENAE+YPI GLFNF YF+E
Sbjct: 368 RLGRERCWQVKWPKKNEVEHFKDANEVLMYLGPDVLKKVIENAEVYPIQGLFNFSHYFNE 427
Query: 437 IDAYYHRTSGDEFGISTGWRALNELYN 463
IDAYYH T G E G+STGWR LN LYN
Sbjct: 428 IDAYYHHTLGFELGVSTGWRGLNGLYN 454
>gi|359483742|ref|XP_002268125.2| PREDICTED: uncharacterized protein LOC100247384 [Vitis vinifera]
Length = 519
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 238/381 (62%), Positives = 286/381 (75%), Gaps = 2/381 (0%)
Query: 79 NNNHHPLTLRTKDLSSVSYRNHPTPT-SETEEKMLDSRS-WEILKIKLKQLGLDIGRCAP 136
N+ P++L+T L S+ P P SE E +S + +LK KL+ +G D
Sbjct: 68 NSRILPISLKTFALPYTSHSKVPGPVYSENPEDTSNSSARLNVLKKKLEVIGFDTQMLKI 127
Query: 137 GVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSL 196
G + + CP C GGDS E SLSLF+ DG AVW+C + KCGW+G+ A V+++ S L
Sbjct: 128 GHYSHLTCPTCKGGDSMEKSLSLFITLDGDYAVWVCHQGKCGWRGNIRAFVNDSSSYGRL 187
Query: 197 KKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPY 256
+ +K+K REITE SL L+PL +EL AYF ER+IS +TL RN VMQK +G + +IAF Y
Sbjct: 188 NQITKIKPKREITEKSLGLKPLCSELVAYFGERMISEKTLARNSVMQKTYGDQFIIAFTY 247
Query: 257 WRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 316
RNG LV+CKYRD NK FWQEKDTEK+FYG+DDI+ SDIIIVEGE+DKLSMEEAGF NC
Sbjct: 248 RRNGVLVSCKYRDVNKNFWQEKDTEKIFYGVDDIKEASDIIIVEGEIDKLSMEEAGFYNC 307
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
VSVPDGAP SVS K SEE+D KYQYLWNCK YL++ASRIILATDGD PG ALAEELAR
Sbjct: 308 VSVPDGAPPSVSTKVFESEEKDIKYQYLWNCKEYLEKASRIILATDGDAPGLALAEELAR 367
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 436
R+GRERCW+V+WPKKN+V+HFKDANEVLMYLGP LK+V+ENAE+YPI GLFNF YF+E
Sbjct: 368 RLGRERCWQVKWPKKNEVEHFKDANEVLMYLGPDVLKKVIENAEVYPIQGLFNFSHYFNE 427
Query: 437 IDAYYHRTSGDEFGISTGWRA 457
IDAYYH T G E G+STGWR
Sbjct: 428 IDAYYHHTLGFELGVSTGWRG 448
>gi|307106874|gb|EFN55118.1| hypothetical protein CHLNCDRAFT_31176, partial [Chlorella
variabilis]
Length = 596
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/310 (61%), Positives = 230/310 (74%)
Query: 398 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 457
KDANEVLM G L+ + NAE +PI GL F +Y+D+I YY D G STGW A
Sbjct: 287 KDANEVLMRDGAAMLRAFLLNAEPFPIRGLLRFHEYYDDIMKYYRLEHKDGQGRSTGWPA 346
Query: 458 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 517
L++LY V+PGELTIVTGVPNSGKSEWID+L+ N+ E W F LCSME K +HAR+L+E
Sbjct: 347 LDQLYKVVPGELTIVTGVPNSGKSEWIDSLLANLAEQHDWCFALCSMEKKATDHARQLVE 406
Query: 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 577
K+I KPFF+ Y RM+ E ++G W+ + F L+R E+D+LP++ WVLD+A+AAV
Sbjct: 407 KYIGKPFFDLPYARGVRRMSERELDEGLDWIDDRFHLVRYEDDALPAVDWVLDVARAAVY 466
Query: 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV 637
R+G+RGLVIDPYNELDHQRP S ETEYVSQMLT VKRFAQ HVWFVAHPRQL +W
Sbjct: 467 RYGIRGLVIDPYNELDHQRPASMNETEYVSQMLTKVKRFAQTTGVHVWFVAHPRQLRDWK 526
Query: 638 GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 697
G+ PNLYDISGSAHFINK DNGIV+HR+RDPE+ +V + VRKVRNK GTIG+ L
Sbjct: 527 GQAPNLYDISGSAHFINKADNGIVVHRDRDPESTVQHKVNILVRKVRNKAAGTIGDCVLE 586
Query: 698 YNRVTGEYMD 707
Y RV G Y+D
Sbjct: 587 YERVNGRYID 596
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 125/230 (54%), Positives = 156/230 (67%), Gaps = 15/230 (6%)
Query: 169 VWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAE 228
+W CFRAKCGW G N R +S K R+ T +S L E+ +FA
Sbjct: 1 MWNCFRAKCGWTGRV-----NTRQGTS-------KAYRQYTNESGFDAELSPEVVNFFAG 48
Query: 229 RLISAETLRRNRVMQKRHGH-EVVIAFPYWRNGKLVNCKYRDFN-KKFWQEKDTEKVFYG 286
R I+A TL RNRV Q+ IAFPY+R+ +LVN KYR KKFWQ + EKV +G
Sbjct: 49 RGITAATLVRNRVAQETLADGSTAIAFPYYRDSQLVNIKYRSVGEKKFWQVRGAEKVLFG 108
Query: 287 LDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 346
LDD+ G+SDI++VEGEMDKL++EEAGF N VSVPDGAP+ V + VP +QDTK+ YLWN
Sbjct: 109 LDDVVGQSDIVVVEGEMDKLALEEAGFTNVVSVPDGAPARVKEGEVPPADQDTKFSYLWN 168
Query: 347 CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDH 396
C+ +L QA+++++ATD D PG ALAEELARR+GRERCWRVRWP N DH
Sbjct: 169 CRAWLDQATKVVIATDNDAPGDALAEELARRLGRERCWRVRWP-LNKEDH 217
>gi|77163600|ref|YP_342125.1| TOPRIM domain-containing protein [Nitrosococcus oceani ATCC 19707]
gi|254435901|ref|ZP_05049408.1| hypothetical protein NOC27_2964 [Nitrosococcus oceani AFC27]
gi|76881914|gb|ABA56595.1| toprim domain-containing protein [Nitrosococcus oceani ATCC 19707]
gi|207089012|gb|EDZ66284.1| hypothetical protein NOC27_2964 [Nitrosococcus oceani AFC27]
Length = 601
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 232/592 (39%), Positives = 344/592 (58%), Gaps = 46/592 (7%)
Query: 127 LGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSAL 186
G+D+ A G + + CP+C+ ++ + L ++ + W+C C W+G S
Sbjct: 8 FGIDVPPAASG-QLSLTCPQCSAQRKKKRAKCLSVNVE--KGAWICHH--CSWRGGLS-- 60
Query: 187 VDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR- 245
R QS+ + + R+ S P +++ +FA+R I+ L RN + K+
Sbjct: 61 ---QREQSNRTLYWRRPDYRQPAPFSPGALP--EDIQRWFAKRGITPAVLERNHIATKKV 115
Query: 246 -----HGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVE 300
IAFPY+R L+N KYRD K F E E++ YGL+D+E + +IVE
Sbjct: 116 YMPQLERWVSAIAFPYYRGETLINAKYRDGRKHFRLEAGAERILYGLNDLEQTT--LIVE 173
Query: 301 GEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILA 360
GEMDKL++E AGF N VSVPDGAP +K + K+++L + LK ++A
Sbjct: 174 GEMDKLALEVAGFRNVVSVPDGAPPPQAK------DYARKFEFLQADEEALKTVKTWVIA 227
Query: 361 TDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 420
D D PGQ LAEEL+RR GRE+C RV WP + KDANEVL+ GP L + ++NA+
Sbjct: 228 VDNDAPGQYLAEELSRRFGREKCKRVLWP-----EACKDANEVLLKRGPEVLTDCIKNAQ 282
Query: 421 LYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGK 480
YP+ G+ ++ID Y T G + G+STGW +++ Y V PGELT+VTGVPNSGK
Sbjct: 283 PYPLAGVLTVSHLSEDIDFLY--THGLKRGMSTGWPSVDICYTVKPGELTVVTGVPNSGK 340
Query: 481 SEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVE 539
S W+D L N+ + GW+F + S EN+ V H +++EK KPF + GS R++
Sbjct: 341 SNWLDCLALNLAQQ-GWRFGVFSPENQPVGHHMARMIEKWAGKPFNK----GSIARLSRS 395
Query: 540 EFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 599
QGK W+ F I E+D +++ VLD A+A VLR+G++GL++DP+NE +H R +
Sbjct: 396 TLAQGKDWVHEHFYWILPEDDQDWTVEHVLDRARALVLRYGIKGLLLDPWNEFEHLRAPN 455
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP---PNLYDISGSAHFINKC 656
TETEY+S +L V++FA+++ HVW VAHP +L + P LYDISGSA++ NK
Sbjct: 456 VTETEYISLVLKRVRQFARYYQVHVWIVAHPAKLFRGKNDQYPVPTLYDISGSANWRNKA 515
Query: 657 DNGIVIHRN-RDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 707
DNG+VI R+ DP+ D V++ ++K+R + VG +G L ++ VT Y +
Sbjct: 516 DNGLVIWRDLGDPKK---DLVEIHIQKIRFREVGRLGAVRLRFDPVTAVYRE 564
>gi|386393853|ref|ZP_10078634.1| hypothetical protein DesU5LDRAFT_3296 [Desulfovibrio sp. U5L]
gi|385734731|gb|EIG54929.1| hypothetical protein DesU5LDRAFT_3296 [Desulfovibrio sp. U5L]
Length = 568
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 231/581 (39%), Positives = 323/581 (55%), Gaps = 51/581 (8%)
Query: 141 RMLCPKCNGGDSEELSLSLFLD-EDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKF 199
+ CP+C+ + + L ++ EDG VW C+ CGW GS A + ++
Sbjct: 20 KTTCPQCSPSRKKSTAPCLSVNVEDG---VWNCWH--CGWTGSLKAGAEKAEARPK---- 70
Query: 200 SKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRV------MQKRHGHEVVIA 253
K IR DSL L L + YF R ISAE L N+V M + I
Sbjct: 71 ---KPIRP-AWDSLRLT-LPANVTEYFQGRGISAEALAANQVGYGPVWMPGPNAEVTCIQ 125
Query: 254 FPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIE----GESDIIIVEGEMDKLSME 309
FPY + G++VN KYRD +K F Q KD EK Y D IE + +I+ EGEMD LS+
Sbjct: 126 FPYLKGGEVVNVKYRDGHKNFRQAKDAEKCLYRFDAIEQRAGADRALIVTEGEMDALSLV 185
Query: 310 EAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQA 369
G+ SVPDGAPS +K + K+ +L + + L + R+IL D D PGQ
Sbjct: 186 TLGYQAVTSVPDGAPSPGTKN------YEKKFSFLESAEGLLAKYGRVILCVDNDAPGQI 239
Query: 370 LAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFN 429
L ELARR+G E+CWRV +P+ KD NEVL LGP A ++V+E A PI GL+
Sbjct: 240 LERELARRIGFEKCWRVAYPEGT-----KDINEVLAKLGPEAARQVIEEARPMPIAGLYT 294
Query: 430 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALIC 489
D +++ Y G G+STGW ++E Y V PGE+TI+TG+P SGKS W+DAL
Sbjct: 295 ASDIKGDVELLY--AEGFRRGLSTGWATVDEHYTVRPGEMTIITGIPGSGKSNWLDALAV 352
Query: 490 NINEHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548
N+ + GW F CS EN V+ HA ++EK + K F + G ERM +E + +
Sbjct: 353 NLFKLHGWSFCFCSPENWPVQRHAAAIMEKIVGKSFAPSR--GLVERMRADEMQYALGQM 410
Query: 549 SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 608
F+ I ++ + ++ +L +AA+ RHGV+G+V+DP+NE +H RP +ETEY+S+
Sbjct: 411 DGAFNFIMLGDEDM-ALDTILGKVRAAIFRHGVKGVVLDPWNEFEHNRPTGLSETEYISK 469
Query: 609 MLTMVKRFAQHHACHVWFVAHPRQLH--NWVGE--PPNLYDISGSAHFINKCDNGIVIHR 664
L+ V+RFA+ + HVW VAHP +L GE P LYDISGSAH+ NK DNGI ++R
Sbjct: 470 ALSKVRRFARINDVHVWIVAHPTKLQKDKESGEYPVPTLYDISGSAHWYNKADNGITVYR 529
Query: 665 NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
+ + D + V K+R + VG G+A L+Y R +G Y
Sbjct: 530 HME-----ADLTDIYVGKIRFREVGQRGKATLAYCRESGTY 565
>gi|359492349|ref|XP_003634401.1| PREDICTED: uncharacterized protein LOC100264270 [Vitis vinifera]
Length = 302
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 169/201 (84%), Positives = 188/201 (93%)
Query: 508 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 567
VREHARKLLEKHIKKPFF+A YG S ERM++EEFE GK WLS TF LIRCENDSLP+IKW
Sbjct: 96 VREHARKLLEKHIKKPFFDAGYGESIERMSIEEFELGKKWLSETFYLIRCENDSLPNIKW 155
Query: 568 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 627
VLDLAKAAVLRHGVRGLVIDPYNELDHQRP +QTETEYVSQMLT++KRFAQHH+CHVWFV
Sbjct: 156 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPANQTETEYVSQMLTIIKRFAQHHSCHVWFV 215
Query: 628 AHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKV 687
AHPRQLH+W G PPN+YDISGSAHFINKCDNGIVIHRNR+P+AGP+D+VQVCVRKVRNKV
Sbjct: 216 AHPRQLHHWDGGPPNMYDISGSAHFINKCDNGIVIHRNRNPDAGPVDQVQVCVRKVRNKV 275
Query: 688 VGTIGEAFLSYNRVTGEYMDI 708
+GT G+AFLSY+R+TG Y D+
Sbjct: 276 IGTTGDAFLSYDRITGVYTDV 296
>gi|240254185|ref|NP_174354.4| nucleic acid binding protein [Arabidopsis thaliana]
gi|332193136|gb|AEE31257.1| nucleic acid binding protein [Arabidopsis thaliana]
Length = 337
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 184/323 (56%), Positives = 235/323 (72%), Gaps = 8/323 (2%)
Query: 102 TPTSETEEKMLDSRSWEILKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFL 161
P E +K++ S+ +++ KL + G+D C PGV + ++CPKC GDS E SL+L++
Sbjct: 21 VPEEEAGKKVVLSKLVTLMR-KLSEQGIDAQNCPPGVRSCLICPKCEVGDSGEKSLTLYI 79
Query: 162 DEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNE 221
DG SA W C R KCG KG VD + K K R+IT +S++LEPL +E
Sbjct: 80 YPDGSSAKWTC-RRKCGLKGVLQ--VDGKL----VSKDPIGKVERKITVESIKLEPLCDE 132
Query: 222 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTE 281
++ +FA R IS +TL RNRVMQKR E+VIAF YW+ G+LV+CKYR KKF QE++T
Sbjct: 133 IQDFFAARAISGKTLERNRVMQKRIDDEIVIAFTYWQRGELVSCKYRSLTKKFVQERNTR 192
Query: 282 KVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKY 341
K+ YGLDDIE S+IIIVEGE DKL+MEEAGF NCVSVPDGAP +VS K +PSE +DT +
Sbjct: 193 KILYGLDDIEETSEIIIVEGEPDKLAMEEAGFFNCVSVPDGAPETVSSKEIPSESKDTAF 252
Query: 342 QYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDAN 401
+Y+WNC YLK+ASRI++ATDGD PGQALAEELARR+G+ERCW V+WPKK++ +HFKDAN
Sbjct: 253 KYIWNCNDYLKKASRIVIATDGDGPGQALAEELARRLGKERCWLVKWPKKSEDEHFKDAN 312
Query: 402 EVLMYLGPGALKEVVENAELYPI 424
EVLM GP LKE + NAE YP+
Sbjct: 313 EVLMSKGPHLLKEAILNAEPYPL 335
>gi|359492351|ref|XP_002284693.2| PREDICTED: uncharacterized protein LOC100247126 [Vitis vinifera]
Length = 928
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 167/213 (78%), Positives = 187/213 (87%)
Query: 251 VIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEE 310
+IAF Y RNG V+CKYRD NK FWQE+DTEK+FYG+DDI+ SDIIIVEGE+DKLSMEE
Sbjct: 32 IIAFTYRRNGVFVSCKYRDVNKNFWQEEDTEKIFYGVDDIKAASDIIIVEGEIDKLSMEE 91
Query: 311 AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQAL 370
AGF NCVSVP+GAP+SVS K S+E+DTKYQYLWNCK YL++ASRIILATDGD PG AL
Sbjct: 92 AGFYNCVSVPNGAPASVSTKVFKSDEEDTKYQYLWNCKEYLEKASRIILATDGDSPGLAL 151
Query: 371 AEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNF 430
AEELARR+GRERCWRV+WPKKN+VDHFKDANEVLMYLGP ALKEV+ENAELYPI GLFNF
Sbjct: 152 AEELARRLGRERCWRVKWPKKNEVDHFKDANEVLMYLGPDALKEVIENAELYPIQGLFNF 211
Query: 431 RDYFDEIDAYYHRTSGDEFGISTGWRALNELYN 463
YFDEIDAYYH+ G E G++TGWR LN LYN
Sbjct: 212 SHYFDEIDAYYHQALGFELGVATGWRGLNGLYN 244
>gi|115469466|ref|NP_001058332.1| Os06g0671700 [Oryza sativa Japonica Group]
gi|113596372|dbj|BAF20246.1| Os06g0671700, partial [Oryza sativa Japonica Group]
Length = 224
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 164/200 (82%), Positives = 184/200 (92%)
Query: 508 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 567
VREHARKLLEK IKKPFF+A YGGSAERM+++EFE+GK WL+ TF LIRCE+D LPS+ W
Sbjct: 1 VREHARKLLEKRIKKPFFDARYGGSAERMSLDEFEEGKQWLNETFHLIRCEDDCLPSVNW 60
Query: 568 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 627
VL+LAKAAVLR+GVRGLVIDPYNELDHQRP +QTETEYVSQMLT +KRFAQHH+CHVWFV
Sbjct: 61 VLELAKAAVLRYGVRGLVIDPYNELDHQRPSNQTETEYVSQMLTKIKRFAQHHSCHVWFV 120
Query: 628 AHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKV 687
AHPRQLHNW G PPN+YDISGSAHFINKCDNGIVIHRNRDP +GP+D VQVCVRKVRNKV
Sbjct: 121 AHPRQLHNWNGGPPNMYDISGSAHFINKCDNGIVIHRNRDPNSGPLDVVQVCVRKVRNKV 180
Query: 688 VGTIGEAFLSYNRVTGEYMD 707
+G IG+AFLSY RV+GE+ D
Sbjct: 181 IGQIGDAFLSYERVSGEFRD 200
>gi|359483975|ref|XP_002270298.2| PREDICTED: uncharacterized protein LOC100263216 [Vitis vinifera]
Length = 380
Score = 351 bits (901), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 182/325 (56%), Positives = 225/325 (69%), Gaps = 11/325 (3%)
Query: 101 PTPTSETEEKMLDSRSWEILKIKLKQLGLDIG-RCAPGVENRMLCPKCNGGDSEELSLSL 159
P + E+ D +L+ K++ G+ + C PG + ++CPKCNGG E SLSL
Sbjct: 59 PVRLDQPEDGSSDLDKLRVLRQKIEVSGITLDDSCVPGRYHHLICPKCNGGQLMERSLSL 118
Query: 160 FLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLG 219
+ +D A+W CFR+ CGW G S +S++ T +T DSL LEPLG
Sbjct: 119 HITQDRNFAMWRCFRSTCGWAGRVFP--------ESSAAYSEV-TNNWMTVDSLGLEPLG 169
Query: 220 NELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKD 279
++L AYF ER+IS +TL RN VMQ G++ VIA Y +NG+LV CKYR K+FWQEK
Sbjct: 170 DKLIAYFGERMISEKTLWRNAVMQ-LSGNQSVIALTYRQNGRLVGCKYRSMGKRFWQEKG 228
Query: 280 TEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDT 339
TEK+ YGLDDI+ ++IIIVEGE+DKLS+EEAGF NCVSVP GAP VS K +PS ++DT
Sbjct: 229 TEKILYGLDDIQEANEIIIVEGEVDKLSVEEAGFCNCVSVPGGAPQKVSAKELPSLDKDT 288
Query: 340 KYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKD 399
Y YLWNCK YL +ASRIILATDGD PGQALAEELARR+G+ERCWRV WPKK D FKD
Sbjct: 289 AYHYLWNCKEYLDKASRIILATDGDSPGQALAEELARRLGKERCWRVSWPKKEDSSCFKD 348
Query: 400 ANEVLMYLGPGALKEVVENAELYPI 424
ANEVL LG AL+EV+ENAELY +
Sbjct: 349 ANEVLKNLGADALREVIENAELYEV 373
>gi|356533161|ref|XP_003535136.1| PREDICTED: uncharacterized protein LOC100814805 [Glycine max]
Length = 375
Score = 347 bits (891), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 177/330 (53%), Positives = 227/330 (68%), Gaps = 6/330 (1%)
Query: 94 SVSYRNHPTPTSETEEKMLDSRSWEILKIKLKQLGLDIGR-CAPGVENRMLCPKCNGGDS 152
+ + P + + D+ ++LK K++ LG+++ + C PG + + CPKC GG
Sbjct: 47 ATTLPTSPGGAEQVVDSSFDAPKVKLLKQKMELLGINLEKSCLPGKYHNLFCPKCKGGQL 106
Query: 153 EELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDS 212
+E SLS + D A+W CFRA+CGW G SA D+ S + + R++ E+S
Sbjct: 107 KERSLSFHIISDCEFAMWRCFRAQCGWAGQVSA--DDKELYSGV--CTNANLYRQLAEES 162
Query: 213 LELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNK 272
L LEPLG E+ AYF ERLIS +TL RN V Q + ++ VIAF Y +NG LV CKYR K
Sbjct: 163 LGLEPLGPEVVAYFGERLISEKTLSRNAVRQLSN-NKTVIAFTYKQNGLLVGCKYRTMEK 221
Query: 273 KFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 332
+FWQ K +K+ YG+DDI S+IIIVEGE+DKLS+EEAGF NCVSVP GAP VS K++
Sbjct: 222 RFWQGKGADKILYGIDDISQASEIIIVEGEIDKLSLEEAGFQNCVSVPVGAPEKVSSKDL 281
Query: 333 PSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKN 392
P E+DT ++YLWNCK YL +A RIILATD DPPGQALAEELARR+GRERCWRV WPKK+
Sbjct: 282 PPIEKDTAFRYLWNCKEYLDKAVRIILATDNDPPGQALAEELARRLGRERCWRVLWPKKD 341
Query: 393 DVDHFKDANEVLMYLGPGALKEVVENAELY 422
+ FKDANEVL Y+G ALK++VENAE Y
Sbjct: 342 EFSSFKDANEVLKYMGADALKKLVENAEPY 371
>gi|388507530|gb|AFK41831.1| unknown [Lotus japonicus]
Length = 384
Score = 335 bits (860), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 175/318 (55%), Positives = 214/318 (67%), Gaps = 6/318 (1%)
Query: 107 TEEKMLDSRSWEILKIKLKQLGLDI-GRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDG 165
++ + D+ ++LK K+ LG+ + C P + + + CPKC GG S+E SLS + D
Sbjct: 67 VDDDIFDAPRMKMLKQKMDLLGIKLDNTCVPALYHNLRCPKCKGGRSKERSLSFHIISDC 126
Query: 166 FSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAY 225
A+W CFR +CGW G A + + K + K + TE SL LEPLG +L AY
Sbjct: 127 EFAMWRCFRPECGWAGRVFA----DDMELDGKVSANAKPYGQTTEKSLGLEPLGPQLLAY 182
Query: 226 FAERLISAETLRRNRVMQKRHGHEV-VIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVF 284
F ERLIS +TL RN V Q + VIAF Y +NG LV CKYR K+FWQ K T+KV
Sbjct: 183 FKERLISEKTLSRNAVRQLSDSDDKKVIAFTYKQNGLLVGCKYRTVEKRFWQGKGTDKVL 242
Query: 285 YGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYL 344
YG+DDI S+IIIVEGE+DKLS+EEAGF NCVSVP GAP VS K++P E+DT YQYL
Sbjct: 243 YGIDDISHASEIIIVEGEIDKLSLEEAGFQNCVSVPVGAPGKVSFKDLPPREKDTAYQYL 302
Query: 345 WNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVL 404
WNCK YL + RIILATD D PGQALAEELARR+G ERCWRV WPKK++ FKDANEVL
Sbjct: 303 WNCKEYLDKVVRIILATDNDQPGQALAEELARRLGHERCWRVHWPKKDESSCFKDANEVL 362
Query: 405 MYLGPGALKEVVENAELY 422
Y+G ALK +VENAE Y
Sbjct: 363 KYMGADALKRMVENAEPY 380
>gi|255564297|ref|XP_002523145.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223537552|gb|EEF39176.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 306
Score = 334 bits (856), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 174/297 (58%), Positives = 207/297 (69%), Gaps = 4/297 (1%)
Query: 127 LGLDIGRCA-PGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSA 185
LG++ R + PG + +LCPKC GG S E SLSL + +D A+W C+R CGW G A
Sbjct: 4 LGINCDRSSIPGKFSHLLCPKCKGGKSVERSLSLHIIQDADFAMWRCYRTCCGWAGQ--A 61
Query: 186 LVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR 245
D+ + + K+ T R+ T + + LEPLG +L AYF++R IS ETLRRN VMQ
Sbjct: 62 FADDRATNEGMNIMLKVNTSRQTTSEGIALEPLGEKLIAYFSDRGISKETLRRNSVMQMA 121
Query: 246 HGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDK 305
+V IAF Y +N LV CKYR KKFWQ+K TEK YGLDDI ++IIIVEGE+DK
Sbjct: 122 ADQDV-IAFTYRQNRVLVGCKYRTTEKKFWQDKGTEKWLYGLDDINETTEIIIVEGEIDK 180
Query: 306 LSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDP 365
LS+EEAGF NCVSVP GAP VS K+VP E D YQYLWNC+ YL + SRIILATDGD
Sbjct: 181 LSVEEAGFRNCVSVPGGAPQVVSTKDVPPLENDKAYQYLWNCRDYLDKVSRIILATDGDV 240
Query: 366 PGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422
GQALAEELARR+G+ERC VRWPKK+ FKDANEVL LGP ALKEV+E AELY
Sbjct: 241 AGQALAEELARRLGKERCCIVRWPKKDHSRCFKDANEVLKCLGPIALKEVIETAELY 297
>gi|4587522|gb|AAD25753.1|AC007060_11 T5I8.11 [Arabidopsis thaliana]
Length = 314
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 175/323 (54%), Positives = 222/323 (68%), Gaps = 24/323 (7%)
Query: 102 TPTSETEEKMLDSRSWEILKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFL 161
P E +K++ S+ +++ KL + G+D C PGV + ++CPKC GDS E SL+L++
Sbjct: 14 VPEEEAGKKVVLSKLVTLMR-KLSEQGIDAQNCPPGVRSCLICPKCEVGDSGEKSLTLYI 72
Query: 162 DEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNE 221
DG SA W C R KCG KG VD + K K R+IT +S++LEPL +E
Sbjct: 73 YPDGSSAKWTC-RRKCGLKGVLQ--VDGKL----VSKDPIGKVERKITVESIKLEPLCDE 125
Query: 222 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTE 281
++ +FA R IS +TL RNRVMQKR E+VIAF YW+ G+LV+CKYR KKF QE++T
Sbjct: 126 IQDFFAARAISGKTLERNRVMQKRIDDEIVIAFTYWQRGELVSCKYRSLTKKFVQERNTR 185
Query: 282 KVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKY 341
K+ YGLDDIE S+IIIVEGE DKL+MEEAGF NCVSVPDGAP +VS K +PSE
Sbjct: 186 KILYGLDDIEETSEIIIVEGEPDKLAMEEAGFFNCVSVPDGAPETVSSKEIPSE------ 239
Query: 342 QYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDAN 401
+ASRI++ATDGD PGQALAEELARR+G+ERCW V+WPKK++ +HFKDAN
Sbjct: 240 ----------SKASRIVIATDGDGPGQALAEELARRLGKERCWLVKWPKKSEDEHFKDAN 289
Query: 402 EVLMYLGPGALKEVVENAELYPI 424
EVLM GP LKE + NAE YP+
Sbjct: 290 EVLMSKGPHLLKEAILNAEPYPL 312
>gi|357495669|ref|XP_003618123.1| hypothetical protein MTR_5g099220 [Medicago truncatula]
gi|355519458|gb|AET01082.1| hypothetical protein MTR_5g099220 [Medicago truncatula]
Length = 331
Score = 328 bits (840), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 173/306 (56%), Positives = 208/306 (67%), Gaps = 16/306 (5%)
Query: 118 EILKIKLKQLGLDI-GRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAK 176
+ILK K++ LG+ + C PG + + CPKC GG E SLS + DG A+W CFR
Sbjct: 37 KILKHKVEPLGISLDNSCLPGNYHNLFCPKCKGGQLMERSLSFHIITDGEFAIWRCFRPI 96
Query: 177 CGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETL 236
CGW G SA D+ + + E+SL LEPLG +L AYF ERLIS +TL
Sbjct: 97 CGWAGQVSA--DDKELDN------------KPDEESLGLEPLGPKLVAYFKERLISEKTL 142
Query: 237 RRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDI 296
RN V Q + VIAF Y +NG +V CKYR K+FWQ K +KV YGLDDI ++I
Sbjct: 143 SRNSVRQ-LSDEKNVIAFTYKQNGLIVGCKYRTMEKRFWQGKVIDKVLYGLDDISHATEI 201
Query: 297 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 356
IIVEGE+DKLS+EEAG+ NCVSVPDGAP VS K+ P E+DT YQYLWN K YL + R
Sbjct: 202 IIVEGEIDKLSLEEAGYQNCVSVPDGAPGKVSSKDPPPIEKDTAYQYLWNSKDYLDKVVR 261
Query: 357 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVV 416
IILATD DPPGQALAEELARR+GRERCW+VRWPKK+++ FKDANEVL Y+G ALK +V
Sbjct: 262 IILATDNDPPGQALAEELARRLGRERCWQVRWPKKDELSFFKDANEVLKYMGANALKRIV 321
Query: 417 ENAELY 422
E AE Y
Sbjct: 322 EKAEPY 327
>gi|297846010|ref|XP_002890886.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297336728|gb|EFH67145.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 314
Score = 327 bits (839), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 166/302 (54%), Positives = 211/302 (69%), Gaps = 23/302 (7%)
Query: 123 KLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGS 182
KL + G+D+ C PG + ++CP C GGDS E +L+L++ DG SA W C R KCG KG
Sbjct: 34 KLAEQGIDVQNCPPGQRSGLICPTCEGGDSGEKNLTLYIYPDGSSAKWSC-RRKCGLKGV 92
Query: 183 TSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVM 242
VD + K K R+IT + ++L+PL +E++ +FA R IS +TL RNRVM
Sbjct: 93 VQ--VDGKL----VSKDPMEKVERKITVEGIKLQPLCDEIQDFFAARAISVKTLERNRVM 146
Query: 243 QKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGE 302
QKR G E+++AF YW+ G+LV+CKYR KKF QE++T K+ YGLDDIE S+IIIVEGE
Sbjct: 147 QKRIGDEIMLAFAYWQRGELVSCKYRSLTKKFSQERNTRKILYGLDDIEKASEIIIVEGE 206
Query: 303 MDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATD 362
+DKL+MEEAGFLNCVSV DGAP +VS K +PSE + SRI+LATD
Sbjct: 207 IDKLAMEEAGFLNCVSVADGAPVTVSSKEIPSES----------------KVSRIVLATD 250
Query: 363 GDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422
GD PGQALAEELARR+G+ERCW V+WPKK++ +HFKDANEVLM GP LKE + NAE Y
Sbjct: 251 GDVPGQALAEELARRLGKERCWLVKWPKKSEDEHFKDANEVLMSKGPQLLKEAILNAEPY 310
Query: 423 PI 424
P+
Sbjct: 311 PL 312
>gi|449435924|ref|XP_004135744.1| PREDICTED: uncharacterized protein LOC101219541 [Cucumis sativus]
Length = 329
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 163/301 (54%), Positives = 205/301 (68%), Gaps = 15/301 (4%)
Query: 134 CAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQ 193
C PG + CPKC GG E SLSL + G A+W CF+ +CGW G A D +
Sbjct: 15 CIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFA--DGKLAF 72
Query: 194 SSLKKFSKMKTIREITEDSLELEPLGNE----------LRAYFAERLISAETLRRNRVMQ 243
+ K +KM + +++SL LEPL +E L +YF+ R+IS ETL RN VMQ
Sbjct: 73 NGFGKITKM--VGRSSKESLVLEPLCDEMFFRMVRSPQLISYFSMRMISQETLERNVVMQ 130
Query: 244 KRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEM 303
G +V IAF Y +NG+LV CKYR +K+FWQEK T K YG+DDI ++IIVEGEM
Sbjct: 131 -LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEM 189
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
DKLS+EEAGFLNC+SVP GAP+ VS VP E+DT YQYLW+CK YL + SR+ILATD
Sbjct: 190 DKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSRVILATDS 249
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYP 423
D PGQALAEELARR+G+ RCWRV WP K+ + FKDANEVL++LGP ALK+ +E+A+ Y
Sbjct: 250 DVPGQALAEELARRLGKNRCWRVSWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQ 309
Query: 424 I 424
+
Sbjct: 310 L 310
>gi|296089225|emb|CBI38997.3| unnamed protein product [Vitis vinifera]
Length = 276
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 166/277 (59%), Positives = 198/277 (71%), Gaps = 15/277 (5%)
Query: 154 ELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSL 213
E SLSL + +D A+W CFR+ CGW G S +S++ T +T DSL
Sbjct: 2 ERSLSLHITQDRNFAMWRCFRSTCGWAGRVFP--------ESSAAYSEV-TNNWMTVDSL 52
Query: 214 ELEPLGNELRAYFAERLISAETLRRNRVMQ---KRHGHEV---VIAFPYWRNGKLVNCKY 267
LEPLG++L AYF ER+IS +TL RN VMQ + G + VIA Y +NG+LV CKY
Sbjct: 53 GLEPLGDKLIAYFGERMISEKTLWRNAVMQLSGNQSGQLIIMSVIALTYRQNGRLVGCKY 112
Query: 268 RDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSV 327
R K+FWQEK TEK+ YGLDDI+ ++IIIVEGE+DKLS+EEAGF NCVSVP GAP V
Sbjct: 113 RSMGKRFWQEKGTEKILYGLDDIQEANEIIIVEGEVDKLSVEEAGFCNCVSVPGGAPQKV 172
Query: 328 SKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 387
S K +PS ++DT Y YLWNCK YL +ASRIILATDGD PGQALAEELARR+G+ERCWRV
Sbjct: 173 SAKELPSLDKDTAYHYLWNCKEYLDKASRIILATDGDSPGQALAEELARRLGKERCWRVS 232
Query: 388 WPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPI 424
WPKK D FKDANEVL LG AL+EV+ENAELY +
Sbjct: 233 WPKKEDSSCFKDANEVLKNLGADALREVIENAELYEV 269
>gi|365856514|ref|ZP_09396531.1| hypothetical protein HMPREF9946_02145 [Acetobacteraceae bacterium
AT-5844]
gi|363718050|gb|EHM01406.1| hypothetical protein HMPREF9946_02145 [Acetobacteraceae bacterium
AT-5844]
Length = 604
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 208/596 (34%), Positives = 304/596 (51%), Gaps = 46/596 (7%)
Query: 135 APGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWK-GSTSALVDNNRSQ 193
APG +++CPKC GG S E SLS+ +D DG VW C R CGW+ G+ D +RS
Sbjct: 24 APGHSEKLICPKCGGGRSREHSLSVTIDPDGEGVVWRCHRGNCGWQDGARLPARDGSRSA 83
Query: 194 SSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRH-----GH 248
+ + + +T + E+ + E +F +R ISAET+ H G+
Sbjct: 84 PAARAAASFQTPQPHPEEQQDKTAWVYE---WFEKRGISAETVDAFGCYGAAHWFPAGGN 140
Query: 249 EVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIE-----GESDIII-VEGE 302
+ I FPY+ KLVN KYR +K+ Q+K+ + +D IE E D++I VEGE
Sbjct: 141 QPAIVFPYFYERKLVNRKYRSLDKQLMQDKNPLPTLFNIDAIEVSEAAPEPDLVIWVEGE 200
Query: 303 MDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATD 362
D +++ EAGF V++ DGAP + ++ P+ + D ++ L L + ILA D
Sbjct: 201 PDVMALHEAGFRQVVTLKDGAPDKIRAEDDPARQDDKRFAALATHADLLGGVKKFILAGD 260
Query: 363 GDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422
D PG+ L EELARR+GR RCW V WP+ KDA + L G A+++ ++ A Y
Sbjct: 261 MDEPGKILREELARRLGRHRCWLVTWPEG-----CKDAGDTLRLHGADAVRQAIDEAVAY 315
Query: 423 PIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGE--LTIVTGVPNSGK 480
PI G+ + R +STG A + + LPGE L +VTG+PN GK
Sbjct: 316 PIEGM----QRLEPGTLLALRHGEPPPLLSTGAGATDRILK-LPGEGRLIVVTGIPNHGK 370
Query: 481 SEWIDALICNINEHAGWKFVLCSMENKVRE-HARKLLEKHIKKPFFEANYGGS----AER 535
S W+ + ++ +F++ S E + E + + KPF+ G
Sbjct: 371 SSWVMFVKVHLMREHRRRFLVFSPEMQPWESYVAQCAAVRAGKPFWPMKDGQGRPLPGLS 430
Query: 536 MTVEEFEQGKAWL-SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH 594
MT EE ++ +AW L+ D PS+ W+L+ AKAAVLR G LVIDP+NE++H
Sbjct: 431 MTDEEIKEAEAWFRPRLVMLVSDAEDVAPSLDWILERAKAAVLRDGTTDLVIDPWNEVEH 490
Query: 595 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG----EPPNLYDISGSA 650
QR TETEYV + L ++ FA H C+VW VAHP +L E P +YDI+G A
Sbjct: 491 QR-GDMTETEYVGRSLQRLRSFANRHGCNVWIVAHPTKLRPLKPGDKIERPVMYDINGGA 549
Query: 651 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI-GEAFLSYNRVTGEY 705
++ NK D GI +H P ++ + K R + G +A L +N+ G Y
Sbjct: 550 NWANKADLGIAVH-------SPDSVTEIHLLKSRYQRWGRRDSKAELEFNKQNGRY 598
>gi|449515949|ref|XP_004165010.1| PREDICTED: uncharacterized protein LOC101227451, partial [Cucumis
sativus]
Length = 278
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 152/269 (56%), Positives = 186/269 (69%), Gaps = 5/269 (1%)
Query: 134 CAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQ 193
C PG + CPKC GG E SLSL + G A+W CF+ +CGW G A D +
Sbjct: 15 CIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFA--DGKLAF 72
Query: 194 SSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIA 253
+ K +KM + +++SL LEPL +EL +YF+ R+IS E L RN VMQ G +V IA
Sbjct: 73 NGFGKITKM--VGRSSKESLVLEPLCDELISYFSMRMISQEILERNVVMQ-LAGRQVTIA 129
Query: 254 FPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGF 313
F Y +NG+LV CKYR +K+FWQEK T K YG+DDI ++IIVEGEMDKLS+EEAGF
Sbjct: 130 FTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGF 189
Query: 314 LNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEE 373
LNC+SVP GAP+ VS VP E+DT YQYLW+CK YL + SRIILATD D PGQALAEE
Sbjct: 190 LNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYLDKVSRIILATDSDVPGQALAEE 249
Query: 374 LARRVGRERCWRVRWPKKNDVDHFKDANE 402
LARR+G+ RCWRV WP K+ + FKDANE
Sbjct: 250 LARRLGKNRCWRVYWPYKDGFNRFKDANE 278
>gi|389696621|ref|ZP_10184263.1| replicative DNA helicase [Microvirga sp. WSM3557]
gi|388585427|gb|EIM25722.1| replicative DNA helicase [Microvirga sp. WSM3557]
Length = 488
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 171/498 (34%), Positives = 256/498 (51%), Gaps = 41/498 (8%)
Query: 225 YFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVF 284
+ +R IS ET R + + + FP+ GK V K+R NKKFWQE ++ F
Sbjct: 9 WLEKRGISDETAVRFGICTV----DGALKFPFTEQGKEVGAKFRGANKKFWQESGGKRTF 64
Query: 285 YGLDDI------EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV--PSEE 336
+ D + +G +II EGE+D L+ E GF VSVPDGAP +V + V P ++
Sbjct: 65 WNADALDDPALEQGSMPLIITEGEIDALTAIECGFPLTVSVPDGAPPAVGEPTVNNPLDD 124
Query: 337 QDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDH 396
Q K+Q+++N + LK+ R +LA D DPPG LA EL RR+G RC V +P +
Sbjct: 125 QTGKFQFMFNNRDRLKRIKRFVLAVDNDPPGIRLASELVRRLGASRCSFVTYP-----EG 179
Query: 397 FKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWR 456
KD NEVL GP + EV+ A+ YP+ GL+ DY A RT G TGW
Sbjct: 180 CKDLNEVLTQCGPEGVTEVLNGAKPYPVKGLYKLEDY---PPAEPIRTVG------TGWA 230
Query: 457 ALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHAR-KL 515
+++ + + PG T+VTG+P GK+ W + NI + GWK + S E H KL
Sbjct: 231 TVDKHFKLFPGAFTVVTGIPGHGKTTWTMGMSINIARNFGWKTAVFSPEMPTVPHLHNKL 290
Query: 516 LEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN----DSLPSIKWVLDL 571
P + +R + E +Q +L+ F + + D +++WV++
Sbjct: 291 RTIASGLPLYRV----LQDRQILRETDQ---FLNEAFVFLDADPEEGIDEDMTLEWVIER 343
Query: 572 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP- 630
A AV RHG++ L+IDP+NE++H +P + +Y+ + + M+KRFA+ V + HP
Sbjct: 344 AHDAVHRHGIKHLIIDPWNEVEHAKPAGEAMPDYIGRGIRMLKRFAKERQVAVTVIVHPT 403
Query: 631 RQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 690
+ + PNLYD GSAH+ NK D G+V+ RDPE + + KVR K G
Sbjct: 404 KAVAGDNPRMPNLYDCEGSAHWYNKPDLGVVV--GRDPENPESPHTVIRIAKVRFKGTGM 461
Query: 691 IGEAFLSYNRVTGEYMDI 708
G+ + Y T ++ +
Sbjct: 462 KGDVLMKYEEDTERFLQL 479
>gi|189460531|ref|ZP_03009316.1| hypothetical protein BACCOP_01172 [Bacteroides coprocola DSM 17136]
gi|189432775|gb|EDV01760.1| hypothetical protein BACCOP_01172 [Bacteroides coprocola DSM 17136]
Length = 607
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 197/584 (33%), Positives = 291/584 (49%), Gaps = 56/584 (9%)
Query: 141 RMLCPKCNGG--DSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTS---ALVDNNRSQSS 195
++ CP+C+ D + SLS+ L+ F+ + CG+ G + +R +
Sbjct: 21 KVFCPQCHDQRHDKRDKSLSINLETGEFNCHY------CGFSGCAAEKEPWEKEDRPWRN 74
Query: 196 LKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRV------MQKRHGHE 249
+ K + + + + + +F R IS +TL +V M +++G
Sbjct: 75 AAPIRREKPVYKKPAPRQDCSSISGKALEWFKGRGISEKTLTAMKVTEGLEWMPQKNGKA 134
Query: 250 VVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSME 309
+ F Y+ NG+LVN K+R +K F E + YG+D+I+G + II EGEMD LS
Sbjct: 135 NTVQFNYYHNGELVNTKFRTGDKCFKLCSGAELLPYGIDNIKGTKECIITEGEMDALSFF 194
Query: 310 EAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQA 369
E G + VSVP+GA S++ + EE Y I +A+D D G
Sbjct: 195 ECGRTDVVSVPNGANSNLDYLDDYLEE-------------YFDDKETIYIASDTDTKGVV 241
Query: 370 LAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFN 429
L EEL RR G ERC + + D KDANE L G +L + + +A I G+F
Sbjct: 242 LKEELIRRFGAERCRIIEYG-----DGCKDANEHLQKYGRESLLKCIADAPEIKIEGVFT 296
Query: 430 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALIC 489
D+ +DA + G + G++ G + L + L I+TGVP+SGKSE+ID +
Sbjct: 297 LSDFEQSLDALFEH--GLQKGVTIGHDNFDRLCSFETKRLCIITGVPSSGKSEFIDEIAE 354
Query: 490 NINEHAGWKFVLCSMENKVRE-HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548
+N GW+F S EN E HA KL+EK K F E +T E++Q K L
Sbjct: 355 RLNIRYGWRFAYFSPENAPLEYHASKLIEKFTGKQF-------DKEHLTYGEYKQVKQHL 407
Query: 549 SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 608
F I ++D + +L+ AK V R G++ LVIDPYN L+ + + ET+Y+S+
Sbjct: 408 ETNFFFISPKSDF--RVDAILERAKFLVRRKGIKVLVIDPYNRLEDESE-GKNETKYISR 464
Query: 609 MLTMVKRFAQHHACHVWFVAHPRQLH-NWVGEP--PNLYDISGSAHFINKCDNGIVIHRN 665
+L + FAQ H V +AHP ++ N GEP P LYDISGSA+F NK D GIV+HRN
Sbjct: 465 LLDKLTNFAQQHDVLVILMAHPTKMQKNKDGEPEIPTLYDISGSANFYNKADFGIVVHRN 524
Query: 666 RDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDIV 709
R + V++ V+KV+ + +G G A YN G Y V
Sbjct: 525 RLE-----NTVEIYVKKVKFRHLGECGMALFKYNLNNGRYSPFV 563
>gi|147865110|emb|CAN79816.1| hypothetical protein VITISV_006608 [Vitis vinifera]
Length = 461
Score = 262 bits (669), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 147/296 (49%), Positives = 176/296 (59%), Gaps = 56/296 (18%)
Query: 168 AVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFA 227
AVW+C + KCGW+G+ IR L AYF
Sbjct: 128 AVWVCHQGKCGWRGN----------------------IR---------------LVAYFG 150
Query: 228 ERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGL 287
ER+IS +TL RN VMQK +G + +IAF Y RNG LV+CKYRD NK FWQEKDTEK+FYG+
Sbjct: 151 ERMISEKTLARNSVMQKTYGDQFIIAFTYRRNGVLVSCKYRDVNKNFWQEKDTEKIFYGV 210
Query: 288 DDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNC 347
DDI+ SDIIIVEGE+DKLSMEEA F NCVSVPD AP SVS K SEE+ +K W+
Sbjct: 211 DDIKEASDIIIVEGEIDKLSMEEAXFYNCVSVPDXAPPSVSTKVFESEEKMSKTTSFWSQ 270
Query: 348 KMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYL 407
K +K+ R L G+ E+ ++ + EVLMYL
Sbjct: 271 K--IKKEVRASLCPLQPDAGEEEKEKKKKKKKEKE-----------------KKEVLMYL 311
Query: 408 GPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN 463
GP LK+V+ENAE+YPI GLFNF YF+EIDAYYH T G E G+STGWR LN LYN
Sbjct: 312 GPDVLKKVIENAEVYPIQGLFNFSHYFNEIDAYYHHTLGFELGVSTGWRGLNGLYN 367
>gi|116253685|ref|YP_769523.1| phage DNA primase/helicase [Rhizobium leguminosarum bv. viciae
3841]
gi|115258333|emb|CAK09435.1| putative phage DNA primase/helicase [Rhizobium leguminosarum bv.
viciae 3841]
Length = 553
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 163/469 (34%), Positives = 239/469 (50%), Gaps = 49/469 (10%)
Query: 251 VIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI------EGESDIIIVEGEMD 304
++ FP+ G+ V KYR KKFWQ K K F+ D + EG +II EGE+D
Sbjct: 70 IVVFPFIDGGRPVGEKYRAPGKKFWQRKGGRKTFWNADCMDDPALEEGHKALIITEGEID 129
Query: 305 KLSMEEAGFLNCVSVPDGAPSSVSKKN-------VPSEEQDTKYQYLWNCKMYLKQASRI 357
L+ + GF VSVPDGAP ++ +P ++ K+++++N + +K+ R
Sbjct: 130 GLTAIDCGFHTTVSVPDGAPPVRDGEDPDQLDDAIPDDDSRGKFEFVYNNRHRIKRIKRF 189
Query: 358 ILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE 417
ILA D DPPG+ LA EL RR+G RC + +P+ KD N+V M GP A+ V+
Sbjct: 190 ILAVDNDPPGRRLAAELVRRLGAARCSFLTYPEG-----CKDLNDVKMRHGPDAVVRVIT 244
Query: 418 NAELYPIMGLFNFRDY--FDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGV 475
A+ YP+ G++ DY DE Y STGW L+E V GEL +VTG+
Sbjct: 245 EAKPYPVKGIYLLSDYPELDEPATY-----------STGWPDLDEYLRVWLGELMVVTGI 293
Query: 476 PNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 535
P GKS W L N+ GW+ + S E R L A G ++
Sbjct: 294 PGHGKSTWTMNLCVNLARKHGWRVGVASFEIPTVPALRFKLRL--------AASGLGTKQ 345
Query: 536 MTVEEFEQGKAWLSNTFSLIRC----ENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 591
T ++ + ++ F I E D +++W+LD A AV+RH ++ LVIDP+NE
Sbjct: 346 WTRDDVAEADVFIQQHFVFIDADPTGEADDDMTLEWLLDRAADAVMRHSIKVLVIDPWNE 405
Query: 592 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP--PNLYDISGS 649
++H RP ++ET+Y+++ L +++FA + VAHP + GE P LYDI GS
Sbjct: 406 VEHYRPKGESETQYINRALRQIRKFALRYGVLAIVVAHPTKELGKGGESRTPTLYDIEGS 465
Query: 650 AHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSY 698
A + NK D+G+VI DP+ + V V+K R G G+ L Y
Sbjct: 466 AAWYNKPDHGVVIDVP-DPD---LHETVVWVKKARFSWSGRKGDVTLEY 510
>gi|424664314|ref|ZP_18101350.1| hypothetical protein HMPREF1205_00189 [Bacteroides fragilis HMW
616]
gi|404575896|gb|EKA80637.1| hypothetical protein HMPREF1205_00189 [Bacteroides fragilis HMW
616]
Length = 622
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 197/622 (31%), Positives = 311/622 (50%), Gaps = 88/622 (14%)
Query: 124 LKQLGLDI---GRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWK 180
++LG++ GR A ++ + CP+C G S + SL +D D S ++ C CGW
Sbjct: 6 FRELGIEFDAYGRTAGHIKTK--CPRCIGQRSNKSDKSLSVDLD--SGLYKCH--YCGWS 59
Query: 181 G-------------STSALVD--NNRSQSSLKKFSK---------MKTIREITEDSLELE 216
G + LVD R+++S + + K E ++L+
Sbjct: 60 GVADDGSGKHGGRKTGDTLVDFPAERNRTSPRPTAPDGTAVPQRPQKPANETPLTPVQLK 119
Query: 217 PLGNE--LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYR-DFNKK 273
L +E + A+ AE+L +++ M + E + F Y G+LVN K+R +K
Sbjct: 120 WLADERHISAHAAEQLHITSSVQ---YMPQSGLEEPCLCFNYLEEGRLVNIKFRATLHKH 176
Query: 274 FWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS--KKN 331
F E + Y +D I+G + II EGE+D + AG + +SVP GA ++ +
Sbjct: 177 FKMLTGAELIPYNIDGIKGTPECIITEGELDAAAFVTAGRTDVISVPGGANRNLKWMDRF 236
Query: 332 VPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 391
V S +D + Y+ A D DP G+ L +EL RR+GRERC V +
Sbjct: 237 VDSHFEDKRVIYI---------------AGDADPKGEELKQELLRRLGRERCRVVSYG-- 279
Query: 392 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGI 451
+ KDANE+L+ GP AL + + +A P+ G++ D +E+ + +G G
Sbjct: 280 ---EGCKDANELLVKAGPEALSQALADAPEMPLEGVYTAADVDEEMRILFE--NGLSRGA 334
Query: 452 STGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VRE 510
TG + L++L G L ++TG P GKSE+ D L+ + + W+ S EN+ +
Sbjct: 335 ETGLKNLDDLCTFETGRLCVITGHPGDGKSEFTDELVLRLCLNHQWRTAYFSPENQPLPY 394
Query: 511 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLD 570
H KL EK + F + MT +E+ + +L+ S I + D +++ +L+
Sbjct: 395 HLAKLTEKLTGQRFRKG-------LMTEMLYEKAQRYLAENISSILPKEDF--TVESILE 445
Query: 571 LAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630
A+ V R G+R LV+DP+N L+H+ P QTET+Y+S L ++ FAQ H C V VAHP
Sbjct: 446 RARQLVRRRGIRILVLDPFNRLEHRIPGGQTETQYISAFLDLLANFAQRHQCLVILVAHP 505
Query: 631 RQLHNWVGEP-------PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 683
R++ +P P L DI+GSA F+NKCD G+V+ R+R +AG + RV V+KV
Sbjct: 506 RKMQT---DPLTKRLPVPTLQDINGSAAFVNKCDFGLVVERDR--QAG-VTRVH--VKKV 557
Query: 684 RNKVVGTIGEAFLSYNRVTGEY 705
+ + +G IGE +N V G Y
Sbjct: 558 KFRHLGNIGECSFVFNTVNGRY 579
>gi|423278354|ref|ZP_17257268.1| hypothetical protein HMPREF1203_01485 [Bacteroides fragilis HMW
610]
gi|404586364|gb|EKA90937.1| hypothetical protein HMPREF1203_01485 [Bacteroides fragilis HMW
610]
Length = 622
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 198/622 (31%), Positives = 311/622 (50%), Gaps = 88/622 (14%)
Query: 124 LKQLGLDI---GRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWK 180
++LG++ GR A ++ + CP+C G S + SL +D D S ++ C CGW
Sbjct: 6 FRELGIEFDAYGRTAGHIKTK--CPRCIGQRSNKSDKSLSVDLD--SGLYKCH--YCGWS 59
Query: 181 G-------------STSALVD--NNRSQSSLKKFSK---------MKTIREITEDSLELE 216
G + LVD R+++S + + K E ++L+
Sbjct: 60 GVADDGSGKHGGRKTGDPLVDFPAERNRTSPRPTAPDGTAAPQHPQKPANETPLTPVQLK 119
Query: 217 PLGNE--LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYR-DFNKK 273
L +E + A+ AE+L +++ M + E + F Y G+LVN K+R +K
Sbjct: 120 WLADERHISAHAAEQLHITSSVQ---YMPQSGLEEPCLCFNYLEEGRLVNIKFRATLHKH 176
Query: 274 FWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS--KKN 331
F E + Y +D I+G + II EGE+D + AG + +SVP GA ++ +
Sbjct: 177 FKMLTGAELIPYNIDGIKGTPECIITEGELDAAAFVTAGRTDVISVPGGANRNLKWMDRF 236
Query: 332 VPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 391
V S +D + Y+ A D DP G+ L +EL RR+GRERC V +
Sbjct: 237 VDSHFEDKRVIYI---------------AGDADPKGEELKQELLRRLGRERCRVVSYG-- 279
Query: 392 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGI 451
+ KDANE+L+ GP AL + + +A P+ G++ D +E+ + +G G
Sbjct: 280 ---EGCKDANELLVKAGPEALSQALADAPEMPLEGVYTAVDVDEEMRILFE--NGLSRGA 334
Query: 452 STGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VRE 510
TG + L++L G L ++TG P GKSE+ D L+ + + W+ S EN+ +
Sbjct: 335 ETGLKNLDDLCTFETGRLCVITGHPGDGKSEFTDELVLRLCLNHQWRTAYFSPENQPLPY 394
Query: 511 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLD 570
H KL EK + F + MT +E+ + +L+ S I + D +++ +L+
Sbjct: 395 HLAKLTEKLTGQRFRKG-------LMTEMLYEKAQRYLAENISSILPKEDF--TVESILE 445
Query: 571 LAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630
A+ V R G+R LV+DP+N L+H+ P QTET+Y+S L ++ FAQ H C V VAHP
Sbjct: 446 RARQLVRRRGIRILVLDPFNRLEHRIPGGQTETQYISAFLDLLANFAQRHQCLVILVAHP 505
Query: 631 RQLHNWVGEP-------PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 683
R++ +P P L DI+GSA F+NKCD G+VI R+R +AG + RV V+KV
Sbjct: 506 RKMQT---DPLTKRLPVPTLQDINGSAAFVNKCDFGLVIERDR--QAG-VTRVH--VKKV 557
Query: 684 RNKVVGTIGEAFLSYNRVTGEY 705
+ + +G IGE +N V G Y
Sbjct: 558 KFRHLGNIGECSFVFNPVNGRY 579
>gi|354603971|ref|ZP_09021964.1| hypothetical protein HMPREF9450_00879 [Alistipes indistinctus YIT
12060]
gi|353348403|gb|EHB92675.1| hypothetical protein HMPREF9450_00879 [Alistipes indistinctus YIT
12060]
Length = 589
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 189/579 (32%), Positives = 284/579 (49%), Gaps = 63/579 (10%)
Query: 139 ENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKK 198
EN M CP C+ ++ + D V C C S+ + + +S+
Sbjct: 22 ENYMTCPVCSETRKKKRDKCFVWNAD--KGVGHC--CHCDATFSSRTQLTSRQSKDYAVP 77
Query: 199 FSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR-----HGHEV-VI 252
K KT +T+ +++ +F R+IS TLR R+ + +G + VI
Sbjct: 78 VWKNKT--GLTDGAVK----------WFEGRMISQATLREMRIYSDKEWMPQYGRDTKVI 125
Query: 253 AFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAG 312
FPY+ +LVN KYR K F K E +FY D I ++I+ EGEMD LS EAG
Sbjct: 126 CFPYFVGDRLVNIKYRGPQKSFRMVKGAELIFYNFDCIAASKELIVCEGEMDALSFIEAG 185
Query: 313 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 372
+ N VSVP+GA + T Y N L R +A D D G L
Sbjct: 186 YKNVVSVPNGAGA-------------TDLTYFDNYVDNLGHIERFYIAADFDEAGLKLRN 232
Query: 373 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRD 432
EL RR+G E+C V + + KDANE+L+ G A++EV+E A+ PI G N +
Sbjct: 233 ELVRRLGSEKCLIVTYKGR------KDANELLIAEGGLAVREVIEGAQEIPIQGYINLSE 286
Query: 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNIN 492
+D+I A Y G G TG ++E+ +L + TG+P+ GKSE +D + +
Sbjct: 287 RYDDIFAMYRH--GLPEGNRTGIAEIDEVIRWEVSQLAVWTGIPSHGKSEMLDMVTVLLA 344
Query: 493 EHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT 551
WK + S EN ++ H K+ EK I K F +++ M+ EEF++ ++ +
Sbjct: 345 VCHDWKTLFFSPENYPIQSHYAKIAEKLIGKSFKQSD-------MSREEFDRVFDYIGDH 397
Query: 552 FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLT 611
F + + P+++ +L AK V R G++ LVIDP+N L+H+R ++T +EYV + L
Sbjct: 398 FFWLDPYEE--PTLENILGRAKQFVQRRGIKQLVIDPFNSLEHKRDRNETGSEYVGRFLD 455
Query: 612 MVKRFAQHHACHVWFVAHP---RQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP 668
+ RFA+ + V VAHP +L + + PP LYDISGSA+F NK D G+ ++R+
Sbjct: 456 ELSRFAKRYGVLVHLVAHPTKLEKLSSGIYPPPTLYDISGSANFYNKADYGLTVYRDFVN 515
Query: 669 EAGPIDRVQVCVRKVRNKVVG-TIGEA-FLSYNRVTGEY 705
R ++ KVR K G + E L YN G Y
Sbjct: 516 H-----RTKLIPTKVRFKNFGHPVSEGVLLQYNPRNGRY 549
>gi|427387567|ref|ZP_18883552.1| hypothetical protein HMPREF9447_04585 [Bacteroides oleiciplenus YIT
12058]
gi|425724966|gb|EKU87839.1| hypothetical protein HMPREF9447_04585 [Bacteroides oleiciplenus YIT
12058]
Length = 588
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 199/602 (33%), Positives = 287/602 (47%), Gaps = 68/602 (11%)
Query: 127 LGLDIGRCAPGVENRMLCPKCNGG--DSEELSLSLFLDEDGFSAVWMCFRAKCGWKG--- 181
G+D R G + CP+C + + SLS+ LD F +C CGWKG
Sbjct: 7 FGIDTCRRTAG-RIKTTCPQCRETRRNKRDKSLSVNLDNGKF----LCHH--CGWKGYAP 59
Query: 182 STSALVDNNRSQSSLKKFSKM-----KTIREITEDSLELEPLGNELRAYFAERLISAETL 236
+ L + + ++ ++ + + + T SL E G+ L R +S +
Sbjct: 60 DETELRERRQKDEYRQRMHQLPSHFHRPVFDPTHLSLS-EKTGHYL---VLVRCLSESAI 115
Query: 237 R------RNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI 290
R + M + E I F Y+ NG+LVN K+R K F KD E + Y +D I
Sbjct: 116 RYLQITEQEEFMPQSGEKENCICFNYFENGELVNTKFRSGQKHFKMVKDAELIPYNIDGI 175
Query: 291 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS--KKNVPSEEQDTKYQYLWNCK 348
S+ I+ EGE+D S G + VSVP GA S+++ + +P+ +D K Y+
Sbjct: 176 LNTSECIVTEGELDAASFITIGRKDTVSVPSGANSNLAWLDRFIPTHFEDKKTVYI---- 231
Query: 349 MYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLG 408
A D D G L EEL RR+G ERC V + KD NE L+ G
Sbjct: 232 -----------AVDEDSAGLKLREELVRRLGAERCRIVHFGPG-----CKDGNEHLVKYG 275
Query: 409 PGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGE 468
+L + AE P+ G+F D E+ A Y +G G TGW ++ +
Sbjct: 276 ADSLGICLAQAEEIPLEGVFTADDVSKELRALYE--NGMAGGAETGWPNFDKYCTLELQR 333
Query: 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFFEA 527
L IV+G P GKSEW+D L+ + WK S EN + H RKL+EK + F
Sbjct: 334 LMIVSGRPGDGKSEWVDELVIRLCLRHEWKIAYFSPENMPIIYHHRKLIEK-LTGLGFNP 392
Query: 528 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 587
+ G MT E +EQ +L++ I D SI +L A+ V+R G+R LVID
Sbjct: 393 HIG-----MTEELYEQSVRFLTDNVCHI-LPGDEDYSIDTILSKARGLVVRRGIRILVID 446
Query: 588 PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NL 643
P N +D + P QTE +Y+S +L + RFA H+ C V VAHPR+++ G P +
Sbjct: 447 PLNRIDQRLPQGQTELQYLSSLLNSLSRFATHYHCLVILVAHPRKMNRNPVTGITPCVEM 506
Query: 644 YDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTG 703
YDI GS+ F NK D GIV+ RD + G V++ + KV+ K +G+ GEA YN + G
Sbjct: 507 YDIFGSSDFYNKADFGIVV--ERDDKKG---MVRIHIDKVKFKHLGSPGEATFVYNVING 561
Query: 704 EY 705
Y
Sbjct: 562 RY 563
>gi|260642353|ref|ZP_05415529.2| DNA primase/helicase [Bacteroides finegoldii DSM 17565]
gi|260622579|gb|EEX45450.1| hypothetical protein BACFIN_06917 [Bacteroides finegoldii DSM
17565]
Length = 613
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 165/474 (34%), Positives = 237/474 (50%), Gaps = 39/474 (8%)
Query: 242 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKK-FWQEKDTEKVFYGLDDIEGESDIIIVE 300
M + E + F Y+ +G+LVN K+R + K F + E + Y +D + G++ II E
Sbjct: 141 MPQSGQKERCVCFNYFEDGQLVNTKFRSVDAKHFKMVQGAELIPYNIDSVLGQTSCIIHE 200
Query: 301 GEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILA 360
GE+D S AGF + +SVP GA S++S + E + + + +I+A
Sbjct: 201 GELDAASSLAAGFKSVISVPAGANSNLSWLDRFME-------------THFEDLTEVIIA 247
Query: 361 TDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 420
D D G L +EL R+G ERC V + KDANE L G +L+ +E A
Sbjct: 248 VDTDSAGLQLRDELINRLGAERCRVVAYGPG-----CKDANEHLCKYGVASLRVAIEQAA 302
Query: 421 LYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGK 480
P+ G+F D ++ A + G G TGW ++++ G L I+TGVP +GK
Sbjct: 303 EVPLEGVFTATDLHSDLLALFENGFGP--GAETGWEEMDKICTYERGRLIILTGVPGAGK 360
Query: 481 SEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVE 539
SEW+D L+ + WK S EN + H RKL+EK F + M E
Sbjct: 361 SEWLDELVLRLCLRHQWKIAFFSPENTPIVYHIRKLVEKLTGHRFQKGCGISEGLLMRSE 420
Query: 540 EFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 599
EF L++ S I + ++ P + VL A VLR G R LVIDP N LDH
Sbjct: 421 EF------LTDNVSHISLKGNATP--ERVLAKAHELVLRRGCRILVIDPLNRLDHTPQPG 472
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH-NWVGEPP---NLYDISGSAHFINK 655
QTET+Y+S L M+ FA H C V VAHPR+++ N V +YDI+GSA F NK
Sbjct: 473 QTETQYLSNFLNMITEFAVQHNCLVVLVAHPRKMNRNPVTNTTPRVEMYDINGSADFFNK 532
Query: 656 CDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDIV 709
D GIV+ R++ + +V V KV+ K +G G +Y+ V+G Y+ V
Sbjct: 533 ADYGIVVERDKG-----VGVTRVYVDKVKFKHLGMGGMVTFAYDPVSGRYLPCV 581
>gi|423299669|ref|ZP_17277694.1| hypothetical protein HMPREF1057_00835 [Bacteroides finegoldii
CL09T03C10]
gi|408473478|gb|EKJ92000.1| hypothetical protein HMPREF1057_00835 [Bacteroides finegoldii
CL09T03C10]
Length = 600
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 164/474 (34%), Positives = 241/474 (50%), Gaps = 39/474 (8%)
Query: 242 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKK-FWQEKDTEKVFYGLDDIEGESDIIIVE 300
M + E + F Y+ +G+LVN K+R + K F + E + Y +D + G++ II E
Sbjct: 128 MSQSGQKERCVCFNYFEDGQLVNTKFRSVDAKHFKMVQGAELIPYNIDSVLGQTSCIIHE 187
Query: 301 GEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILA 360
GE+D S AGF + +SVP GA S++S + E + + + +I+A
Sbjct: 188 GELDAASSLAAGFKSVISVPAGANSNLSWLDRFME-------------THFEDLTEVIIA 234
Query: 361 TDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 420
D D G L +EL R+G ERC V + KDANE L G +L+ +E A
Sbjct: 235 VDTDSAGLQLRDELINRLGAERCRVVTYGPG-----CKDANEHLCKYGVASLRVAIEQAA 289
Query: 421 LYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGK 480
P+ G+F D ++ A + G G TGW ++++ G L I+TGVP +GK
Sbjct: 290 EVPLEGVFTAADLHSDLLALFENGFGP--GAETGWEEMDKICTYERGRLVILTGVPGAGK 347
Query: 481 SEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVE 539
SEW+D L+ + WK S EN + H RKL+EK F + G +E + V
Sbjct: 348 SEWLDELVLRLCLRHQWKIAFFSPENTPIVYHIRKLVEKLTGHRFQKGC--GISEGLLVR 405
Query: 540 EFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 599
E +L++ S I + ++ P+ VL A V+R G R LVIDP N LDH
Sbjct: 406 SEE----FLTDNVSHISLKGNATPA--RVLAKAHELVVRRGCRILVIDPLNRLDHTPQPG 459
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH-NWVGEPP---NLYDISGSAHFINK 655
QTET+Y+S L M+ FA H C V VAHPR+++ N V +YDI+GSA F NK
Sbjct: 460 QTETQYLSNFLNMITEFAVQHNCLVVLVAHPRKMNRNPVTNTTPRVEMYDINGSADFFNK 519
Query: 656 CDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDIV 709
D GIV+ R+++ + +V V KV+ K +G G +Y+ V+G Y+ V
Sbjct: 520 ADYGIVVERDKE-----VGVTRVYVDKVKFKHLGMGGMVTFAYDPVSGRYLPCV 568
>gi|270296576|ref|ZP_06202775.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270272563|gb|EFA18426.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 604
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 192/599 (32%), Positives = 278/599 (46%), Gaps = 59/599 (9%)
Query: 126 QLGLDI-GRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWK---- 180
Q G+D GR + + +++CP+CN + + SL +D D +C+ CG+K
Sbjct: 6 QHGIDTRGRISGKI--KIICPQCNDTRGHKGNKSLSVDLDK----GLCYCHHCGYKLYVP 59
Query: 181 GSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNR 240
+ R K + + R T D ++ N R + R + E LR R
Sbjct: 60 DDAEERLKQQRRDMHRKPTAPPQHFRRPTFDPARMQLSENLERYWTTVRCLPQELLRTLR 119
Query: 241 VMQK------RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGES 294
+ ++ E I F Y+ NG LVN KYR K F K E + Y +D I G
Sbjct: 120 ITEETVRLPESSQEENCICFNYFENGTLVNTKYRSALKHFMMVKGAELIPYNVDSILGTP 179
Query: 295 DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS--KKNVPSEEQDTKYQYLWNCKMYLK 352
+ II EGE D ++ AG + VSVP GA S+++ + V S +D K
Sbjct: 180 ECIITEGEFDAAAIIAAGRKDVVSVPAGAQSNLTWLDRFVESHFED-------------K 226
Query: 353 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGAL 412
QA I +A D DP GQ+L +EL RR+G ERC V + + KDANE L+ G +L
Sbjct: 227 QA--IYIAVDEDPAGQSLRQELTRRLGVERCRIVHFGEG-----CKDANEHLVKYGAESL 279
Query: 413 KEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIV 472
+ +E AE P+ G+F D D++ + Y +G + G TGW +E P L ++
Sbjct: 280 RICIEQAEEMPLEGIFTAEDCGDDLRSLYE--NGLQRGADTGWDNFDEHCTFEPRRLLVM 337
Query: 473 TGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFFEANYGG 531
TG P GKSE+ D L+ + WK S EN + H KL EK F
Sbjct: 338 TGRPGDGKSEFTDELVLRLCLRHEWKIAFFSPENMPIAYHLHKLAEKLTGHRF------T 391
Query: 532 SAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 591
MT + Q WL S I ++ S I +L+ A+ V R GVR LVIDP N
Sbjct: 392 PGPGMTEAVYGQAVGWLDRNVSHILPDDGSY-GIDHILEKARQVVRRKGVRILVIDPMNR 450
Query: 592 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH----NWVGEPPNLYDIS 647
L+ + QTE +Y++ L + RF + C V VAHPR+++ + + DI+
Sbjct: 451 LEQRLEPGQTEMDYITDTLNKLGRFTTRNQCLVILVAHPRKVNRNEKDGTRRRVEMNDIN 510
Query: 648 GSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI-GEAFLSYNRVTGEY 705
GSA+F N D +V+ RN + I + KVR K +G+ EA YN + G Y
Sbjct: 511 GSANFANMSDFCLVVDRNDTKQIATI-----YIEKVRFKHLGSAHTEAKFVYNHLNGRY 564
>gi|160889423|ref|ZP_02070426.1| hypothetical protein BACUNI_01847 [Bacteroides uniformis ATCC 8492]
gi|156860940|gb|EDO54371.1| hypothetical protein BACUNI_01847 [Bacteroides uniformis ATCC 8492]
Length = 604
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 189/599 (31%), Positives = 277/599 (46%), Gaps = 59/599 (9%)
Query: 126 QLGLDI-GRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWK---- 180
Q G+D GR + + +++CP+CN + + SL +D D +C+ CG+K
Sbjct: 6 QHGIDTRGRISGKI--KIICPQCNDTRGHKGNKSLSVDLDK----GLCYCHHCGYKLYVP 59
Query: 181 GSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNR 240
+ R K + + R T + ++ N R + R + E LR R
Sbjct: 60 DDAEERLKQQRRDMHRKPTAPPQHFRRPTFNPARMQLSENLERYWTTVRCLPQELLRTLR 119
Query: 241 VMQK------RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGES 294
+ ++ E I F Y+ NG LVN KYR K F K E + Y +D I G
Sbjct: 120 ITEETVRLPESSQEENCICFNYFENGTLVNTKYRSALKHFMMVKGAELIPYNVDSILGTP 179
Query: 295 DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS--KKNVPSEEQDTKYQYLWNCKMYLK 352
+ II EGE D ++ AG + VSVP GA S+++ + V S +D + Y
Sbjct: 180 ECIITEGEFDAAAVIAAGRKDVVSVPAGAQSNLTWLDRFVESHFEDKQTIY--------- 230
Query: 353 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGAL 412
+A D DP GQ+L +EL RR+G ERC V + + KDANE L+ G +L
Sbjct: 231 ------IAVDEDPAGQSLRQELTRRIGVERCRIVHFGEG-----CKDANEHLVKYGAESL 279
Query: 413 KEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIV 472
+ +E AE P+ G+F D D++ + Y +G + G TGW +E P L ++
Sbjct: 280 RICIEQAEEVPLEGIFTAEDCRDDLRSLYE--NGLQRGADTGWDNFDEHCTFEPRRLLVM 337
Query: 473 TGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFFEANYGG 531
TG P GKSE+ D L+ + WK S EN + H KL EK F
Sbjct: 338 TGRPGDGKSEFTDELVLRLCLRHEWKIAFFSPENMPIAYHLHKLAEKLTGHRF------T 391
Query: 532 SAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 591
MT + Q WL S I ++ S I +L+ A+ V R GVR LVIDP N
Sbjct: 392 PGPGMTEAVYGQAVGWLDRNVSHILPDDGSY-GIDHILEKARQVVRRKGVRILVIDPMNR 450
Query: 592 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH----NWVGEPPNLYDIS 647
L+ + QTE +Y++ L + RFA + C V VAHPR+++ + + DI+
Sbjct: 451 LEQRLEPGQTEMDYITDTLNKLGRFATRNQCLVILVAHPRKVNRNEKDGTRRRVEMNDIN 510
Query: 648 GSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI-GEAFLSYNRVTGEY 705
GSA+F N D +V+ RN + I + KVR K +G+ EA YN + G Y
Sbjct: 511 GSANFANMSDFCLVVDRNDTKQIATI-----YIEKVRFKHLGSAHTEAKFVYNHLNGRY 564
>gi|317479937|ref|ZP_07939052.1| DNA primase/helicase [Bacteroides sp. 4_1_36]
gi|423307090|ref|ZP_17285089.1| hypothetical protein HMPREF1072_04029 [Bacteroides uniformis
CL03T00C23]
gi|423308327|ref|ZP_17286317.1| hypothetical protein HMPREF1073_01067 [Bacteroides uniformis
CL03T12C37]
gi|316903882|gb|EFV25721.1| DNA primase/helicase [Bacteroides sp. 4_1_36]
gi|392676983|gb|EIY70403.1| hypothetical protein HMPREF1072_04029 [Bacteroides uniformis
CL03T00C23]
gi|392687563|gb|EIY80855.1| hypothetical protein HMPREF1073_01067 [Bacteroides uniformis
CL03T12C37]
Length = 604
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 194/600 (32%), Positives = 280/600 (46%), Gaps = 61/600 (10%)
Query: 126 QLGLDI-GRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWK---- 180
Q G+D GR + + + +CP+CN + + SL +D D +C+ CG+K
Sbjct: 6 QRGIDTRGRISGKI--KTICPQCNDTRGHKGNKSLSVDLDK----GLCYCHHCGYKLYVP 59
Query: 181 GSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAE-RLISAETLRRN 239
+ R K + + R T D ++ L L Y+ R + E LR
Sbjct: 60 DDAEERLKQQRRDMHRKPAAPPQHFRRPTFDPARMQ-LSESLERYWTTVRCLPQELLRTL 118
Query: 240 RVMQK------RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGE 293
R+ ++ + E I F Y+ NG LVN KYR K F K E + Y +D I G
Sbjct: 119 RITEETVRLPESNQEENCICFNYFENGTLVNTKYRSALKHFMMVKGAELIPYNVDSILGT 178
Query: 294 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS--KKNVPSEEQDTKYQYLWNCKMYL 351
+ II EGE D ++ AG + VSVP GA S+++ + V S +D
Sbjct: 179 PECIITEGEFDAAAVIAAGRKDVVSVPAGAQSNLTWLDRFVESHFED------------- 225
Query: 352 KQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGA 411
KQA I +A D DP GQ+L +EL RR+G ERC V + + KDANE L+ G +
Sbjct: 226 KQA--IYIAVDEDPAGQSLRQELTRRLGVERCRIVHFGEG-----CKDANEHLVKYGAES 278
Query: 412 LKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTI 471
L+ +E AE P+ G+F D D++ + Y +G + G TGW +E P L +
Sbjct: 279 LRICIEQAEEVPLEGIFTAEDCRDDLRSLYE--NGLQRGADTGWDNFDEHCTFEPRRLLV 336
Query: 472 VTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFFEANYG 530
+TG P GKSE+ D L+ + WK S EN + H KL EK F
Sbjct: 337 MTGRPGDGKSEFTDELVLRLCLRHEWKIAFFSPENMPIAYHLHKLAEKLTGHRF------ 390
Query: 531 GSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 590
MT + Q WL S I ++ S I +L+ A+ V R GVR LVIDP N
Sbjct: 391 TPGPGMTEALYGQAVGWLDRNVSHILPDDGSY-GIDHILEKARQVVRRKGVRILVIDPMN 449
Query: 591 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH----NWVGEPPNLYDI 646
L+ + QTE +Y++ L + RFA + C V VAHPR+++ + + DI
Sbjct: 450 RLEQRLEPGQTEMDYITDTLNKLGRFATRNQCLVILVAHPRKVNRNEKDGTLRRVEMNDI 509
Query: 647 SGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI-GEAFLSYNRVTGEY 705
+GSA+F N D +V+ RN + I + KVR K +G+ EA YN + G Y
Sbjct: 510 NGSANFANMSDFCLVVDRNDTKQIATI-----YIEKVRFKHLGSAHTEAKFVYNHLNGRY 564
>gi|159490076|ref|XP_001703015.1| predicted protein [Chlamydomonas reinhardtii]
gi|158270922|gb|EDO96753.1| predicted protein [Chlamydomonas reinhardtii]
Length = 928
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 134/339 (39%), Positives = 186/339 (54%), Gaps = 57/339 (16%)
Query: 393 DVDHFKDANEVLMYLGPGALKEVV-ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGI 451
D KDAN+VL+ GP L ++ E A + GL FR+Y + + +YY + G+
Sbjct: 371 DTGRRKDANDVLVLDGPERLARLLAEEARPAKLRGLATFREYEEALTSYYLQEDPLALGV 430
Query: 452 STGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511
STGW +L++ Y V PGELTIVTG+PNSGKSE++DAL+ N+ E+ GW F +CS+E H
Sbjct: 431 STGWPSLDKYYRVAPGELTIVTGIPNSGKSEFLDALLVNLAENHGWAFAMCSLEKGPVPH 490
Query: 512 ARKLLEKHIKKPFFEANYGGS-AERMTVEEFEQGKAWLSNTFSLIR---CENDSLPSIKW 567
+ L+EK ++KPF + G M++ E G W+++ F LIR ++ PSI W
Sbjct: 491 LKALIEKRMRKPFKTTKHNGQWVPAMSMPELVSGFQWVADHFHLIRYDEADDTGSPSIDW 550
Query: 568 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 627
VL++A+ AV+R V++FA+ CHVWFV
Sbjct: 551 VLNMARIAVMRS---------------------------------VRKFARETDCHVWFV 577
Query: 628 AHPRQLH----------NWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID--- 674
AHPRQ H G P LYDISGSAH+ NK DNGIV+HR + A P+
Sbjct: 578 AHPRQQHAARTGGKGGGGAGGSSPGLYDISGSAHWFNKTDNGIVVHRRFEVRADPLSGKE 637
Query: 675 ------RVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 707
V++ ++KVRNK VGT G+ +L Y+R TG Y D
Sbjct: 638 VRMALPEVEIKLQKVRNKDVGTQGQTYLLYDRPTGRYAD 676
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 100/204 (49%), Gaps = 46/204 (22%)
Query: 229 RLISAETLRRNRV--------MQKRHGHEV---VIAFPYWRNGKLVNCKYRDFNKKFWQ- 276
R IS + +R R+ + K G +V + FPY+ +G++VN K R F ++ Q
Sbjct: 99 RRISDDVIRAARLYVEPAPPLLDKASGRQVPRLALCFPYFVHGRIVNVKKRFFVPEWAQP 158
Query: 277 --EKD------TEKVFYGLDDI---------EGESDIIIVEGEMDKLSMEEAGFLNCVSV 319
+KD E V YG DD+ G +++VEGEMDKL++ G+ N VSV
Sbjct: 159 FSKKDFRLGYGCELVAYGHDDLMRHIAAAGGGGAVTVVVVEGEMDKLALNTVGYWNVVSV 218
Query: 320 PDGA---------PSSVSKKNVPSE------EQDTKYQYLWNCKMYLKQASR--IILATD 362
P+GA P + ++ SE E+ Y +L + L ++ +LATD
Sbjct: 219 PNGAALAKLNPANPDAPPRQQFSSEPDRAAAEEARYYSWLESLLRLLPDPAKAVFVLATD 278
Query: 363 GDPPGQALAEELARRVGRERCWRV 386
D G+ L EL RR+GRERCW V
Sbjct: 279 TDTAGRGLRAELMRRLGRERCWEV 302
>gi|293372731|ref|ZP_06619112.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|336414701|ref|ZP_08595047.1| hypothetical protein HMPREF1017_02155 [Bacteroides ovatus
3_8_47FAA]
gi|423298095|ref|ZP_17276154.1| hypothetical protein HMPREF1070_04819 [Bacteroides ovatus
CL03T12C18]
gi|292632240|gb|EFF50837.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|335933813|gb|EGM95815.1| hypothetical protein HMPREF1017_02155 [Bacteroides ovatus
3_8_47FAA]
gi|392664037|gb|EIY57580.1| hypothetical protein HMPREF1070_04819 [Bacteroides ovatus
CL03T12C18]
Length = 599
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 190/615 (30%), Positives = 289/615 (46%), Gaps = 79/615 (12%)
Query: 123 KLKQLGLDI-GRCAPGVENRMLCPKCNG--GDSEELSLSLFLDEDGFSAVWMCFRAKCGW 179
+ K+LG+D GR + ++ + CP C+ D + SLS+ LD + +++C CG
Sbjct: 3 RFKELGIDTHGRTSGKMKTK--CPWCHAQRTDKRDKSLSVNLD----TKLYLCHY--CGA 54
Query: 180 KGSTSALVDNNR--------------SQSSLKKFSKMKTIRE---ITEDSLELEPLGNEL 222
GS + R S SS K E +T+ +E ++
Sbjct: 55 HGSAAIYAGKGRKLGDPLVKFPTATGSNSSCPPTEKPHGDPEQGALTQKQIEW---CRDV 111
Query: 223 RAYFAERLISAETLRRNRVMQ---KRHGHEV--VIAFPYWRNGKLVNCKYRDFNKKFWQE 277
R E L+ A + M K G E + F ++ NG+LVN K+RD K F
Sbjct: 112 RHIPPEVLVEAGVAFASISMPISGKEKGWEKRDCLCFNFFENGELVNTKFRDSQKHFKLL 171
Query: 278 KDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 337
+ + Y +D I + I+VEGE D LS G + +SVP+GA S + + SE
Sbjct: 172 QGARTIPYNIDAIRDTPECILVEGEFDALSYMAVGRTDVISVPNGANSQLDWLDELSES- 230
Query: 338 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 397
+ +Q I L+ D D G+ L EL+RR+G +RC V + + +
Sbjct: 231 ------------HFEQKQVIYLSVDTDRKGRELCRELSRRLGVDRCRIVTYGEA-----Y 273
Query: 398 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHR--TSGDEFGISTGW 455
KDANE+L+ GP AL + +E+A + + G F D + + + TSG E GI
Sbjct: 274 KDANELLVAEGPDALLKALEDAPIPRLEGTFTAEDLRERLHQLFEEGYTSGVELGIPN-- 331
Query: 456 RALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARK 514
L+E+ + G + VTG+P GKS+++D ++ + W+ S EN + H K
Sbjct: 332 --LDEIMRLETGRVLTVTGIPGHGKSDFVDEIVLRLCTRQDWRAGYFSPENTPIEYHHAK 389
Query: 515 LLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 574
L EK + F + T EEF + +LS I + D ++ VL A+
Sbjct: 390 LAEKLLGHRF-------RKDFSTEEEFARVVDYLSQRVWHILPDGDF--TLGNVLSKARE 440
Query: 575 AVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH 634
V RHG+R VIDPYN ++HQ P TET Y+ + + RFA+ ++C V VAHPR+++
Sbjct: 441 LVHRHGIRVFVIDPYNYINHQIPAGMTETGYIGSFMNSLARFARLNSCLVILVAHPRKMN 500
Query: 635 NWVG----EPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 690
G E P +YDI+GSA+F N D GIV+ R + + V + V K R + GT
Sbjct: 501 KQYGTQKTEVPTMYDINGSANFFNMTDYGIVVDRQDE-----MGIVYIHVEKTRFRNFGT 555
Query: 691 IGEAFLSYNRVTGEY 705
G A Y+ G Y
Sbjct: 556 KGNAAFCYDVTNGRY 570
>gi|29346582|ref|NP_810085.1| DNA primase/helicase [Bacteroides thetaiotaomicron VPI-5482]
gi|29338478|gb|AAO76279.1| DNA primase/helicase [Bacteroides thetaiotaomicron VPI-5482]
Length = 599
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 155/470 (32%), Positives = 235/470 (50%), Gaps = 38/470 (8%)
Query: 242 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 301
M + E + F Y+ +GKLVN K+R K F + E + Y +D + G+ II EG
Sbjct: 129 MSQSGTKERCVCFNYFEDGKLVNTKFRSGAKNFKMVQGAELIPYNIDSVLGQDTCIIHEG 188
Query: 302 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 361
E+D S GF + +SVP GA +++S + E + + II+A
Sbjct: 189 ELDAASSLATGFKSVISVPAGANANLSWLDRFMES-------------HFENLKDIIIAV 235
Query: 362 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 421
D D G L +EL R+G ERC + KDANE L+ G +L+ +E AE
Sbjct: 236 DTDSAGLKLRDELVNRLGAERCRVAVYGPG-----CKDANEHLVKYGIDSLRIAIEQAEE 290
Query: 422 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
P+ G+F D +++ A + G G TGW ++++ L IVTG+P +GKS
Sbjct: 291 IPLEGIFTAADLHEDLRALFDNGFGP--GAETGWEEMDKICTYERRRLVIVTGIPGAGKS 348
Query: 482 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540
EW+D L+ + WK S EN + H RKL+EK + F N G E + +
Sbjct: 349 EWLDELVLRLCMRHQWKIAFFSPENNPIVYHLRKLIEKLTGRRF--QNGCGMTEGLLL-- 404
Query: 541 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
+ + +L+ I + + P + VL A+ VLR G R V DP N +H Q
Sbjct: 405 --RSEEFLAENVCHIALKGSATP--ERVLAKARELVLRRGCRIFVFDPVNRFEHTPAPGQ 460
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH-NWVGE---PPNLYDISGSAHFINKC 656
+ET+Y+S L + FA + C V VAHPR+++ N V P++YD++GSA F NK
Sbjct: 461 SETQYLSNFLNLFTEFATQYNCLVILVAHPRKMNRNPVTNHTPRPDMYDVNGSADFFNKA 520
Query: 657 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
D G+V+ R+++ + +V V KV+ K +GT G A Y+ V+G Y+
Sbjct: 521 DYGLVVERDKE-----VGVTRVYVEKVKFKHLGTGGVATFVYDPVSGRYL 565
>gi|224539181|ref|ZP_03679720.1| hypothetical protein BACCELL_04083 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519196|gb|EEF88301.1| hypothetical protein BACCELL_04083 [Bacteroides cellulosilyticus
DSM 14838]
Length = 604
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 180/597 (30%), Positives = 275/597 (46%), Gaps = 55/597 (9%)
Query: 126 QLGLDI-GRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTS 184
+ G+D GR + + + +CP+CN + + S +D D +C+ CG K
Sbjct: 6 KYGIDTHGRTSGKI--KTICPECNATRGHKGNKSFSIDLDK----GLCYCHHCGHKFYVP 59
Query: 185 ALVDNNRSQSSLKKFSKMKTI----REITEDSLELEPLGNELRAYFAERLISAETLRRNR 240
+ Q +K+++ + R D+ + + N R + ER ++ L R
Sbjct: 60 DDAEERERQQLKEKYNRTSKLPSHFRRPVFDAAKAKLSENLERYWTQERCLAQHLLAELR 119
Query: 241 VMQK------RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGES 294
+ ++ H E + F Y+ NG L+N KYR K F K E + Y +D I
Sbjct: 120 ITEECIMLPESHELENCLCFNYFENGTLINTKYRSGRKHFMMVKGAELIPYNIDAILDTP 179
Query: 295 DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA 354
+ II EGE D + AG + +SVP GA ++++ + DT ++
Sbjct: 180 ECIITEGEFDAAAFMSAGRKDVISVPAGAQNNLTWMD---RFVDTHFE----------PK 226
Query: 355 SRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKE 414
I +ATD D G+ L EL RR+G ERC V + + KDANE L+ G +L
Sbjct: 227 QLIYIATDEDNSGRLLQRELVRRLGTERCRLVHFGPE-----CKDANEHLIRYGAESLLI 281
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 474
+ AE P+ G+F D D + +G + G TGW L+E G + +G
Sbjct: 282 TLAQAEEIPLEGVFTAEDRQDAFRTLFE--NGLQRGAETGWDNLDENCTFETGRFVVTSG 339
Query: 475 VPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE-HARKLLEKHIKKPFFEANYGGSA 533
P GKSE+ID L+ + GWK S EN E H KL EK PF
Sbjct: 340 FPGDGKSEFIDELVLRLCLRHGWKIGYFSPENMPMEYHLAKLSEKLTGHPF------RPG 393
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
MT + + WL++ + I + S ++ +L+ A+ V R G+R VIDP N +D
Sbjct: 394 AGMTETLYNRVVRWLTDNVTHILPDTGSY-TVDCILEKARQLVRRRGMRIFVIDPLNRID 452
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH----NWVGEPPNLYDISGS 649
Q QTE +Y++ +L + RFAQ H C + VAHPR+++ N + DI+GS
Sbjct: 453 QQLEPGQTELQYITSLLNKLSRFAQQHKCLIILVAHPRKVNRNTTNGERRRAEMNDINGS 512
Query: 650 AHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI-GEAFLSYNRVTGEY 705
A+F N D +++ RN D E V + + KVR K +G+ A YNR+ G Y
Sbjct: 513 ANFGNMADYCLIVDRNDDKEI-----VTIHIDKVRFKHLGSAHTNAKFVYNRINGRY 564
>gi|298387690|ref|ZP_06997241.1| DNA primase/helicase [Bacteroides sp. 1_1_14]
gi|298259546|gb|EFI02419.1| DNA primase/helicase [Bacteroides sp. 1_1_14]
Length = 599
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 155/470 (32%), Positives = 235/470 (50%), Gaps = 38/470 (8%)
Query: 242 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 301
M + E + F Y+ +GKLVN K+R K F + E + Y +D + G+ II EG
Sbjct: 129 MSQSGTKERCVCFNYFEDGKLVNTKFRSGAKNFKMVQGAELIPYNIDSVLGQDTCIIHEG 188
Query: 302 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 361
E+D S GF + +SVP GA +++S + E + + II+A
Sbjct: 189 ELDAASSLATGFKSVISVPAGANANLSWLDRFMES-------------HFENLKDIIIAV 235
Query: 362 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 421
D D G L +EL R+G ERC + KDANE L+ G +L+ +E AE
Sbjct: 236 DTDSAGLKLRDELVNRLGAERCRVAVYGPG-----CKDANEHLVKYGIDSLRIAIEQAEE 290
Query: 422 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
P+ G+F D +++ A + G G TGW ++++ L IVTG+P +GKS
Sbjct: 291 IPLEGIFTAADLHEDLRALFDNGFGP--GAETGWEEMDKICTYERRRLVIVTGIPGAGKS 348
Query: 482 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540
EW+D L+ + WK S EN + H RKL+EK + F N G E + +
Sbjct: 349 EWLDELVLRLCMRHQWKIAFFSPENNPIVYHLRKLIEKLTGRRF--QNGCGMTEGLLL-- 404
Query: 541 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
+ + +L+ I + + P + VL A+ VLR G R V DP N +H Q
Sbjct: 405 --RSEEFLAENVCHIALKGSATP--ERVLAKARELVLRRGCRIFVFDPVNRFEHTPAPGQ 460
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH-NWVGEP---PNLYDISGSAHFINKC 656
+ET+Y+S L + FA + C V VAHPR+++ N V P++YD++GSA F NK
Sbjct: 461 SETQYLSNFLNLFTEFATQYNCLVILVAHPRKMNRNPVTNHTPRPDMYDVNGSADFFNKA 520
Query: 657 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
D G+V+ R+++ + +V V KV+ K +GT G A Y+ V+G Y+
Sbjct: 521 DYGLVVERDKE-----VGVTRVYVEKVKFKHLGTGGVATFVYDPVSGRYL 565
>gi|262409381|ref|ZP_06085924.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294644921|ref|ZP_06722657.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294808819|ref|ZP_06767549.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
gi|345509457|ref|ZP_08789055.1| DNA primase/helicase [Bacteroides sp. D1]
gi|229446161|gb|EEO51952.1| DNA primase/helicase [Bacteroides sp. D1]
gi|262352833|gb|EEZ01930.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292639734|gb|EFF58016.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294443991|gb|EFG12728.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
Length = 599
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 190/615 (30%), Positives = 289/615 (46%), Gaps = 79/615 (12%)
Query: 123 KLKQLGLDI-GRCAPGVENRMLCPKCNG--GDSEELSLSLFLDEDGFSAVWMCFRAKCGW 179
+ K+LG+D GR + ++ + CP C+ D + SLS+ LD + +++C CG
Sbjct: 3 RFKELGIDTHGRTSGKMKTK--CPWCHAQRTDKRDKSLSVNLD----TKLYLCHY--CGA 54
Query: 180 KGSTSALVDNNR--------------SQSSLKKFSKMKTIRE---ITEDSLELEPLGNEL 222
GS + R S SS K E +T+ +E ++
Sbjct: 55 HGSAAIYAGKGRKLGDPLVKFPTATGSNSSCPPTEKPHGDPEQGALTQKQIEW---CRDV 111
Query: 223 RAYFAERLISAETLRRNRVMQ---KRHGHEV--VIAFPYWRNGKLVNCKYRDFNKKFWQE 277
R E L+ A + M K G E + F ++ NG+LVN K+RD K F
Sbjct: 112 RHIPPEVLVEAGVAFASISMPISGKEKGWEKRDCLCFNFFENGELVNTKFRDSQKHFKLL 171
Query: 278 KDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 337
+ + Y +D I + I+VEGE D LS G + +SVP+GA S + + SE
Sbjct: 172 QGARTIPYNIDAIRDTPECILVEGEFDALSYMAVGRTDVISVPNGANSQLDWLDELSES- 230
Query: 338 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 397
+ +Q I L+ D D G+ L EL+RR+G +RC V + + +
Sbjct: 231 ------------HFEQKQVIYLSVDTDRKGRELCRELSRRLGVDRCRIVTYGEA-----Y 273
Query: 398 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHR--TSGDEFGISTGW 455
KDANE+L+ GP AL + +E+A + + G F D + + + TSG E GI
Sbjct: 274 KDANELLVAEGPDALLKALEDAPIPRLEGTFTAEDLREGLHQLFEEGYTSGVELGIPN-- 331
Query: 456 RALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARK 514
L+E+ + G + VTG+P GKS+++D ++ + W+ S EN + H K
Sbjct: 332 --LDEIMRLETGRVLTVTGIPGHGKSDFVDEIVLRLCTRQDWRAGYFSPENTPIEYHHAK 389
Query: 515 LLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 574
L EK + F + T EEF + +LS I + D ++ VL A+
Sbjct: 390 LAEKLLGHRF-------RKDFSTEEEFARVVDYLSQRVWHILPDGDF--TLGNVLSKARE 440
Query: 575 AVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH 634
V RHG+R VIDPYN ++HQ P TET Y+ + + RFA+ ++C V VAHPR+++
Sbjct: 441 LVHRHGIRVFVIDPYNYINHQIPAGMTETGYIGSFMNSLARFARLNSCLVILVAHPRKMN 500
Query: 635 NWVG----EPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 690
G E P +YDI+GSA+F N D GIV+ R + + V + V K R + GT
Sbjct: 501 KQYGTQKTEVPTMYDINGSANFFNMTDYGIVVDRQDE-----MGIVYIHVEKTRFRNFGT 555
Query: 691 IGEAFLSYNRVTGEY 705
G A Y+ G Y
Sbjct: 556 KGNAAFCYDVTNGRY 570
>gi|427382316|ref|ZP_18879036.1| hypothetical protein HMPREF9447_00069 [Bacteroides oleiciplenus YIT
12058]
gi|425729561|gb|EKU92412.1| hypothetical protein HMPREF9447_00069 [Bacteroides oleiciplenus YIT
12058]
Length = 604
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 194/600 (32%), Positives = 281/600 (46%), Gaps = 61/600 (10%)
Query: 126 QLGLDI-GRCAPGVENRMLCPKCNG--GDSEELSLSLFLDEDGFSAVWMCFRAKCGWK-- 180
Q G+D GR + + + +CPKCN G + SL++ L E +C+ CG+K
Sbjct: 6 QYGIDTKGRNSGKI--KTICPKCNDTRGHKGDKSLAVNLSEG------VCYCHHCGYKLY 57
Query: 181 -GSTSALVDNNRSQSSLKKFSKMKT-IREITEDSLELEPLGNELRAYFA-ERLISAETLR 237
+ + Q L+K S++ + R T D + + L +L Y+ ER ++ L
Sbjct: 58 VPDDAEERQRKQRQEQLRKVSQLPSHFRRPTFDPAKAK-LSEKLEKYWTQERCLAQNLLA 116
Query: 238 RNRVMQ---KRHGH---EVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIE 291
R+ + K G+ E + F Y+ NG L+N KYR K F E + Y +D I
Sbjct: 117 ELRITEECTKLPGNNEIENCLCFNYFENGILINTKYRSALKHFKMVTGAELIPYNIDAIA 176
Query: 292 GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 351
+ II EGE D + AG + +SVP GA S+++ + E +
Sbjct: 177 DTPECIITEGEFDACAFMSAGRKDVISVPAGAQSNLTWMDRFVE-------------THF 223
Query: 352 KQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGA 411
+Q I +A D D GQAL EL RR+G ERC V + KDANE L+ G +
Sbjct: 224 EQKKVIYIAADEDGAGQALRHELVRRLGAERCRLVHFGPG-----CKDANEHLIRYGAES 278
Query: 412 LKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTI 471
L + AE P+ G+F DY +++ A + +G G TGW + G +
Sbjct: 279 LLITLAQAEEIPLEGVFTAEDYREDLRALFE--NGLCRGADTGWDNFDANCTFETGRSVV 336
Query: 472 VTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYG 530
TG P GKSE+ID L+ + GWK S EN V H KL+EK F
Sbjct: 337 ATGSPGHGKSEFIDELVLRLCLRHGWKIAYFSPENSPVNYHHAKLIEKLTGLQF------ 390
Query: 531 GSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 590
G MT E + WL+ + I D+ +I +L+ A+ V R GVR LVIDP N
Sbjct: 391 GPVPGMTEELYNHSVNWLTANVTHILPGTDAC-TIDHILEKARQLVYRRGVRILVIDPLN 449
Query: 591 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQL--HNWVGE--PPNLYDI 646
LD Q QTE Y++ +L + RFA H C V VAHPR++ + GE + DI
Sbjct: 450 RLDQQLEPGQTELMYITSLLGKLNRFAVQHKCLVILVAHPRKMNRNTATGELRRVEMNDI 509
Query: 647 SGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIG-EAFLSYNRVTGEY 705
+GSA+F N D + + R+ + V V + KVR K +G+ +A YNR+ G Y
Sbjct: 510 NGSANFGNMSDYCLCVSRDDAKQL-----VTVYIDKVRFKHLGSANTDAKFVYNRLNGRY 564
>gi|380695157|ref|ZP_09860016.1| DNA primase/helicase [Bacteroides faecis MAJ27]
Length = 602
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 155/470 (32%), Positives = 234/470 (49%), Gaps = 38/470 (8%)
Query: 242 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 301
M + E + F Y+ +GKLVN K+R K F + E + Y +D + G+ II EG
Sbjct: 129 MSQSGAKERCVCFNYFEDGKLVNTKFRSGAKNFKMVQGAELIPYNIDSVLGQDTCIIHEG 188
Query: 302 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 361
E+D S AGF + +SVP GA +++S + E + + II+A
Sbjct: 189 ELDAASSLAAGFKSVISVPAGANANLSWLDRFMES-------------HFENLKDIIIAV 235
Query: 362 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 421
D D G L +EL R+G ERC + KDANE L+ G +L+ +E AE
Sbjct: 236 DTDSAGLKLRDELVNRLGAERCRVAVYGPG-----CKDANEHLVKYGIDSLRIAIEQAEE 290
Query: 422 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
P+ G+F D +++ A + G G TGW ++++ L IVTG+P +GKS
Sbjct: 291 IPLEGIFTAADLHEDLRALFDNGFGP--GAETGWEEMDKICTYERRRLVIVTGIPGAGKS 348
Query: 482 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540
EW+D L+ + WK S EN + H RKL+EK + F N G E + +
Sbjct: 349 EWLDELVLRLCMRHQWKIAFFSPENNPIVYHLRKLVEKLTGRRF--QNGCGMTEGLLL-- 404
Query: 541 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
+ + +L+ I + + P + VL A+ VLR G R V DP N +H Q
Sbjct: 405 --RSEEFLAENVCHIALKGSATP--ERVLAKARELVLRRGCRIFVFDPVNRFEHTPAPGQ 460
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH-NWVGE---PPNLYDISGSAHFINKC 656
+ET+Y+S L + FA + C V VAHPR+++ N V P +YD++GSA F NK
Sbjct: 461 SETQYLSNFLNLFTEFATQYNCLVILVAHPRKMNRNPVTNHTPRPEMYDVNGSADFFNKA 520
Query: 657 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
D G+V+ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 521 DYGLVVERDKE-----VGVTRVYVEKVKFKHLGAGGVATFVYDPVSGRYL 565
>gi|336406254|ref|ZP_08586914.1| hypothetical protein HMPREF0127_04227 [Bacteroides sp. 1_1_30]
gi|335935282|gb|EGM97240.1| hypothetical protein HMPREF0127_04227 [Bacteroides sp. 1_1_30]
Length = 599
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 190/615 (30%), Positives = 289/615 (46%), Gaps = 79/615 (12%)
Query: 123 KLKQLGLDI-GRCAPGVENRMLCPKCNG--GDSEELSLSLFLDEDGFSAVWMCFRAKCGW 179
+ K+LG+D GR + ++ + CP C+ D + SLS+ LD + +++C CG
Sbjct: 3 RFKELGIDTHGRTSGKMKTK--CPWCHAQRTDKRDKSLSVNLD----TKLYLCHY--CGA 54
Query: 180 KGSTSALVDNNR--------------SQSSLKKFSKMKTIRE---ITEDSLELEPLGNEL 222
GS + R S SS K E +T+ +E ++
Sbjct: 55 HGSAAIYAGKGRKLGDPLVKFPTATGSNSSCPPSEKPHGDPEQGALTQKQIEW---CRDV 111
Query: 223 RAYFAERLISAETLRRNRVMQ---KRHGHEV--VIAFPYWRNGKLVNCKYRDFNKKFWQE 277
R E L+ A + M K G E + F ++ NG+LVN K+RD K F
Sbjct: 112 RHIPPEVLVEAGVAFASISMPISGKEKGWEKRDCLCFNFFENGELVNTKFRDSQKHFKLL 171
Query: 278 KDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 337
+ + Y +D I + I+VEGE D LS G + +SVP+GA S + + SE
Sbjct: 172 QGARTIPYNIDAIRDTPECILVEGEFDALSYMAVGRTDVISVPNGANSQLDWLDELSES- 230
Query: 338 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 397
+ +Q I L+ D D G+ L EL+RR+G +RC V + + +
Sbjct: 231 ------------HFEQKQVIYLSVDTDRKGRELCRELSRRLGVDRCRIVTYGEA-----Y 273
Query: 398 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHR--TSGDEFGISTGW 455
KDANE+L+ GP AL + +E+A + + G F D + + + TSG E GI
Sbjct: 274 KDANELLVAEGPDALLKALEDAPIPRLEGTFTAEDLREGLHQLFEEGYTSGVELGIPN-- 331
Query: 456 RALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARK 514
L+E+ + G + VTG+P GKS+++D ++ + W+ S EN + H K
Sbjct: 332 --LDEIMRLETGRVLTVTGIPGHGKSDFVDEIVLRLCTRQDWRAGYFSPENTPIEYHHAK 389
Query: 515 LLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 574
L EK + F + T EEF + +LS I + D ++ VL A+
Sbjct: 390 LAEKLLGHRF-------RKDFSTEEEFARVVDYLSQRVWHILPDGDF--TLGNVLSKARE 440
Query: 575 AVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH 634
V RHG+R VIDPYN ++HQ P TET Y+ + + RFA+ ++C V VAHPR+++
Sbjct: 441 LVHRHGIRVFVIDPYNYINHQIPAGMTETGYIGSFMNSLARFARLNSCLVILVAHPRKMN 500
Query: 635 NWVG----EPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 690
G E P +YDI+GSA+F N D GIV+ R + + V + V K R + GT
Sbjct: 501 KQYGTQKTEVPTMYDINGSANFFNMTDYGIVVDRQDE-----MGIVYIHVEKTRFRNFGT 555
Query: 691 IGEAFLSYNRVTGEY 705
G A Y+ G Y
Sbjct: 556 KGNAAFCYDVTNGRY 570
>gi|160885998|ref|ZP_02067001.1| hypothetical protein BACOVA_04004 [Bacteroides ovatus ATCC 8483]
gi|156108811|gb|EDO10556.1| hypothetical protein BACOVA_04004 [Bacteroides ovatus ATCC 8483]
Length = 612
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 158/470 (33%), Positives = 227/470 (48%), Gaps = 38/470 (8%)
Query: 242 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 301
M + E I F Y+ G+L+N K+R K F + E + Y +D I G++ II EG
Sbjct: 143 MPQSGKKERCICFNYFEGGQLINTKFRALPKLFKMVQGAELIPYNIDSIVGQTSCIIHEG 202
Query: 302 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 361
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 203 ELDAASSIAAGFQSVISVPAGANSNLSWLDRFME-------------THFEDLKEIIIAV 249
Query: 362 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 421
D D G L EL R+G ERC V + + KDANE L G +L+ +E A
Sbjct: 250 DADSAGIRLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQAAE 304
Query: 422 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
P+ G+F D D++ A + G G TGW ++++ G VTGVP +GKS
Sbjct: 305 VPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEEMDKICTYERGRSVYVTGVPGAGKS 362
Query: 482 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540
EW+D L+ + WK S EN + H RKL+EK F N G E +
Sbjct: 363 EWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTEGL---- 416
Query: 541 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
+ +L+ S I + + P VL A V+R G R +V DP N DH Q
Sbjct: 417 LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELVIRRGCRIIVFDPLNRFDHNPQPGQ 474
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKC 656
TET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA F NK
Sbjct: 475 TETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSADFYNKA 534
Query: 657 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
D GI++ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 535 DYGIIVERDKE-----VGVTRVYVDKVKFKHLGVGGMASFVYDPVSGRYL 579
>gi|345513107|ref|ZP_08792630.1| DNA primase/helicase [Bacteroides dorei 5_1_36/D4]
gi|345456297|gb|EEO44890.2| DNA primase/helicase [Bacteroides dorei 5_1_36/D4]
Length = 653
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 170/501 (33%), Positives = 245/501 (48%), Gaps = 50/501 (9%)
Query: 219 GNELRAYFAERLISAETLRRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNK 272
G + R I + L R ++ + + E I FPY +G + N K+RD K
Sbjct: 149 GEMMEYMVGRRGIPMDVLTRMKIEERLEFLSQTGKEEACICFPYLEDGVMKNMKFRDAAK 208
Query: 273 KFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 332
F K E + + +D I+G+ I EGE+D LS+ AG VSVP+GA +
Sbjct: 209 HFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGAGGA------ 262
Query: 333 PSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 391
Q+L + + + IILA D D G L +EL RR+G +RC V W
Sbjct: 263 -------NLQWLDRFVESHFDDKTEIILAMDTDKRGVELRDELVRRLGMDRCKVVAWG-- 313
Query: 392 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI-DAYYHRTSGDEFG 450
+ KDANE L+ L++ VE A P+ G+F D +D + D YY +G G
Sbjct: 314 ---EGCKDANEYLLKYDLSRLRQQVEQAAEIPLEGVFCPMDEWDTLMDIYY---NGMPEG 367
Query: 451 ISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VR 509
TG L+ L G + VTGVP SGKSE++D + + WK S EN +
Sbjct: 368 ADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDEIAMRLLLRHDWKVGYFSPENTPLA 427
Query: 510 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT-FSLIRCENDSLPSIKWV 568
H RKL+ + + K F + M + E Q +L+ + FS++ E+ S+ S V
Sbjct: 428 YHYRKLIRRVVGKRF-------EHKGMPLPEAGQAIRYLAQSVFSIMPKEDFSVES---V 477
Query: 569 LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 628
L +A V R GV+ LV+DP+N +HQ P +TET+Y+S++ FA H + VA
Sbjct: 478 LRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQYISRIFDEFSNFAVKHKVLLILVA 537
Query: 629 HPRQLHNWVGEP----PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 684
HP +L G P LYDI+GSA F NK D G+VI RN + + +V V V KVR
Sbjct: 538 HPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGMVIDRNDE-----LGQVLVRVAKVR 592
Query: 685 NKVVGTIGEAFLSYNRVTGEY 705
+G G+AF +++ G Y
Sbjct: 593 FDHLGGPGDAFFAFSTYNGRY 613
>gi|265751835|ref|ZP_06087628.1| DNA primase/helicase [Bacteroides sp. 3_1_33FAA]
gi|263236627|gb|EEZ22097.1| DNA primase/helicase [Bacteroides sp. 3_1_33FAA]
Length = 507
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 170/501 (33%), Positives = 245/501 (48%), Gaps = 50/501 (9%)
Query: 219 GNELRAYFAERLISAETLRRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNK 272
G + R I + L R ++ + + E I FPY +G + N K+RD K
Sbjct: 3 GEMMEYMVGRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDAAK 62
Query: 273 KFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 332
F K E + + +D I+G+ I EGE+D LS+ AG VSVP+GA +
Sbjct: 63 HFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGAGGA------ 116
Query: 333 PSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 391
Q+L + + + IILA D D G L +EL RR+G +RC V W
Sbjct: 117 -------NLQWLDRFVESHFDDKTEIILAMDTDKRGVELRDELVRRLGMDRCKVVAWG-- 167
Query: 392 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI-DAYYHRTSGDEFG 450
+ KDANE L+ L++ VE A P+ G+F D +D + D YY +G G
Sbjct: 168 ---EGCKDANEYLLKYDLPRLRQQVEQAAEIPLEGVFCPMDEWDTLMDIYY---NGMPEG 221
Query: 451 ISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VR 509
TG L+ L G + VTGVP SGKSE++D + + WK S EN +
Sbjct: 222 ADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDEIAMRLLLRHDWKVGYFSPENTPLA 281
Query: 510 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT-FSLIRCENDSLPSIKWV 568
H RKL+ + + K F + M + E Q +L+ + FS++ E+ S+ S V
Sbjct: 282 YHYRKLIRRVVGKRF-------EHKGMPLPEAGQAIRYLAQSVFSIMPKEDFSVES---V 331
Query: 569 LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 628
L +A V R GV+ LV+DP+N +HQ P +TET+Y+S++ FA H + VA
Sbjct: 332 LRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQYISRIFDEFSNFAVKHKVLLILVA 391
Query: 629 HPRQLHNWVGEP----PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 684
HP +L G P LYDI+GSA F NK D G+VI RN + + +V V V KVR
Sbjct: 392 HPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGMVIDRNDE-----LGQVLVRVAKVR 446
Query: 685 NKVVGTIGEAFLSYNRVTGEY 705
+G G+AF +++ G Y
Sbjct: 447 FDHLGGPGDAFFAFSTYNGRY 467
>gi|423240299|ref|ZP_17221414.1| hypothetical protein HMPREF1065_02037 [Bacteroides dorei
CL03T12C01]
gi|392644400|gb|EIY38139.1| hypothetical protein HMPREF1065_02037 [Bacteroides dorei
CL03T12C01]
Length = 652
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 170/501 (33%), Positives = 245/501 (48%), Gaps = 50/501 (9%)
Query: 219 GNELRAYFAERLISAETLRRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNK 272
G + R I + L R ++ + + E I FPY +G + N K+RD K
Sbjct: 148 GEMMEYMVGRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDAAK 207
Query: 273 KFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 332
F K E + + +D I+G+ I EGE+D LS+ AG VSVP+GA +
Sbjct: 208 HFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGAGGA------ 261
Query: 333 PSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 391
Q+L + + + IILA D D G L +EL RR+G +RC V W
Sbjct: 262 -------NLQWLDRFVESHFDDKTEIILAMDTDKRGVELRDELVRRLGMDRCKVVAWG-- 312
Query: 392 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI-DAYYHRTSGDEFG 450
+ KDANE L+ L++ VE A P+ G+F D +D + D YY +G G
Sbjct: 313 ---EGCKDANEYLLKYDLPRLRQQVEQAAEIPLEGVFCPMDEWDTLMDIYY---NGMPEG 366
Query: 451 ISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VR 509
TG L+ L G + VTGVP SGKSE++D + + WK S EN +
Sbjct: 367 ADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDEIAMRLLLRHDWKVGYFSPENTPLA 426
Query: 510 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT-FSLIRCENDSLPSIKWV 568
H RKL+ + + K F + M + E Q +L+ + FS++ E+ S+ S V
Sbjct: 427 YHYRKLIRRVVGKRF-------EHKGMPLPEAGQAIRYLAQSVFSIMPKEDFSVES---V 476
Query: 569 LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 628
L +A V R GV+ LV+DP+N +HQ P +TET+Y+S++ FA H + VA
Sbjct: 477 LRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQYISRIFDEFSNFAVKHKVLLILVA 536
Query: 629 HPRQLHNWVGEP----PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 684
HP +L G P LYDI+GSA F NK D G+VI RN + + +V V V KVR
Sbjct: 537 HPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGMVIDRNDE-----LGQVLVRVAKVR 591
Query: 685 NKVVGTIGEAFLSYNRVTGEY 705
+G G+AF +++ G Y
Sbjct: 592 FDHLGGPGDAFFAFSTYNGRY 612
>gi|294776206|ref|ZP_06741691.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
gi|294449889|gb|EFG18404.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
Length = 507
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 169/501 (33%), Positives = 245/501 (48%), Gaps = 50/501 (9%)
Query: 219 GNELRAYFAERLISAETLRRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNK 272
G + R I + L R ++ + + E I FPY +G + N K+RD K
Sbjct: 3 GKMMEYMVGRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDAAK 62
Query: 273 KFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 332
F K E + + +D I+G+ I EGE+D LS+ AG VSVP+GA +
Sbjct: 63 HFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGAGGA------ 116
Query: 333 PSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 391
Q+L + + + IILA D D G L +EL RR+G +RC V W
Sbjct: 117 -------NLQWLDRFVESHFDDKTEIILAMDTDKRGVELRDELVRRLGMDRCKVVAWG-- 167
Query: 392 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI-DAYYHRTSGDEFG 450
+ KDANE L+ L++ VE A P+ G+F D +D + D YY +G G
Sbjct: 168 ---EGCKDANEYLLKYDLPRLRQQVEQAAEIPLEGVFCPMDEWDTLMDIYY---NGMPEG 221
Query: 451 ISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VR 509
TG L+ L G + VTGVP SGKSE++D + + WK S EN +
Sbjct: 222 ADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDEIAMRLLLRHDWKVGYFSPENTPLA 281
Query: 510 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT-FSLIRCENDSLPSIKWV 568
H RKL+ + + K F + M + E Q +L+ + FS++ E+ S+ S V
Sbjct: 282 YHYRKLIRRVVGKRF-------EHKGMPLPEAGQAIRYLAQSVFSIMPKEDFSVES---V 331
Query: 569 LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 628
L +A V R GV+ LV+DP+N +HQ P +TET+Y+S++ FA H + VA
Sbjct: 332 LRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQYISRIFDEFSNFAVKHKVLLILVA 391
Query: 629 HPRQLHNWVGEP----PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 684
HP +L G P LYDI+GSA F NK D G+V+ RN + + +V V V KVR
Sbjct: 392 HPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGMVVDRNDE-----LGQVLVRVAKVR 446
Query: 685 NKVVGTIGEAFLSYNRVTGEY 705
+G G+AF +++ G Y
Sbjct: 447 FDHLGGPGDAFFAFSTYNGRY 467
>gi|423229487|ref|ZP_17215892.1| hypothetical protein HMPREF1063_01712 [Bacteroides dorei
CL02T00C15]
gi|423245329|ref|ZP_17226403.1| hypothetical protein HMPREF1064_02609 [Bacteroides dorei
CL02T12C06]
gi|392633700|gb|EIY27640.1| hypothetical protein HMPREF1063_01712 [Bacteroides dorei
CL02T00C15]
gi|392639436|gb|EIY33256.1| hypothetical protein HMPREF1064_02609 [Bacteroides dorei
CL02T12C06]
Length = 507
Score = 222 bits (565), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 169/501 (33%), Positives = 245/501 (48%), Gaps = 50/501 (9%)
Query: 219 GNELRAYFAERLISAETLRRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNK 272
G + R I + L R ++ + + E I FPY +G + N K+RD K
Sbjct: 3 GEMMEYMVGRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDAAK 62
Query: 273 KFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 332
F K E + + +D I+G+ I EGE+D LS+ AG VSVP+GA +
Sbjct: 63 HFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGAGGA------ 116
Query: 333 PSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 391
Q+L + + + IILA D D G L +EL RR+G +RC V W
Sbjct: 117 -------NLQWLDRFVESHFDDKTEIILAMDTDRRGVELRDELVRRLGMDRCKVVAWG-- 167
Query: 392 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI-DAYYHRTSGDEFG 450
+ KDANE L+ L++ VE A P+ G+F D +D + D YY +G G
Sbjct: 168 ---EGCKDANEYLLKYDLPRLRQQVEQAAEIPLEGVFCPMDEWDTLMDIYY---NGMPEG 221
Query: 451 ISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VR 509
TG L+ L G + VTGVP SGKSE++D + + WK S EN +
Sbjct: 222 ADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDEIAMRLLLRHDWKVGYFSPENTPLA 281
Query: 510 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT-FSLIRCENDSLPSIKWV 568
H RKL+ + + K F + M + E Q +L+ + FS++ E+ S+ S V
Sbjct: 282 YHYRKLIRRVVGKRF-------EHKGMPLPEAGQAIRYLAQSVFSIMPKEDFSVES---V 331
Query: 569 LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 628
L +A V R GV+ LV+DP+N +HQ P +TET+Y+S++ FA H + VA
Sbjct: 332 LRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQYISRIFDEFSNFAVKHKVLLILVA 391
Query: 629 HPRQLHNWVGEP----PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 684
HP +L G P LYDI+GSA F NK D G+V+ RN + + +V V V KVR
Sbjct: 392 HPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGMVVDRNDE-----LGQVLVRVAKVR 446
Query: 685 NKVVGTIGEAFLSYNRVTGEY 705
+G G+AF +++ G Y
Sbjct: 447 FDHLGGPGDAFFAFSTYNGRY 467
>gi|150006399|ref|YP_001301143.1| DNA primase/helicase [Bacteroides vulgatus ATCC 8482]
gi|149934823|gb|ABR41521.1| DNA primase/helicase [Bacteroides vulgatus ATCC 8482]
Length = 507
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 169/501 (33%), Positives = 245/501 (48%), Gaps = 50/501 (9%)
Query: 219 GNELRAYFAERLISAETLRRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNK 272
G + R I + L R ++ + + E I FPY +G + N K+RD K
Sbjct: 3 GKMMEYMVGRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDAAK 62
Query: 273 KFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 332
F K E + + +D I+G+ I EGE+D LS+ AG VSVP+GA +
Sbjct: 63 HFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGAGGA------ 116
Query: 333 PSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 391
Q+L + + + IILA D D G L +EL RR+G +RC V W
Sbjct: 117 -------NLQWLDRFVESHFDDKTEIILAMDTDRRGVELRDELVRRLGVDRCKVVAWG-- 167
Query: 392 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI-DAYYHRTSGDEFG 450
+ KDANE L+ L++ VE A P+ G+F D +D + D YY +G G
Sbjct: 168 ---EGCKDANEYLLKYDLPRLRQQVEQAAEIPLEGVFCPMDEWDTLMDIYY---NGMPEG 221
Query: 451 ISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VR 509
TG L+ L G + VTGVP SGKSE++D + + WK S EN +
Sbjct: 222 ADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDEIAMRLLLRHDWKVGYFSPENTPLA 281
Query: 510 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT-FSLIRCENDSLPSIKWV 568
H RKL+ + + K F + M + E Q +L+ + FS++ E+ S+ S V
Sbjct: 282 YHYRKLIRRVVGKRF-------EHKGMPLPEAGQAIRYLAQSVFSIMPKEDFSVES---V 331
Query: 569 LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 628
L +A V R GV+ LV+DP+N +HQ P +TET+Y+S++ FA H + VA
Sbjct: 332 LRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQYISRIFDEFSNFAVKHKVLLILVA 391
Query: 629 HPRQLHNWVGEP----PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 684
HP +L G P LYDI+GSA F NK D G+V+ RN + + +V V V KVR
Sbjct: 392 HPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGMVVDRNDE-----LGQVLVRVAKVR 446
Query: 685 NKVVGTIGEAFLSYNRVTGEY 705
+G G+AF +++ G Y
Sbjct: 447 FDHLGGPGDAFFAFSTYNGRY 467
>gi|319643662|ref|ZP_07998279.1| DNA primase/helicase [Bacteroides sp. 3_1_40A]
gi|345521427|ref|ZP_08800753.1| DNA primase/helicase [Bacteroides sp. 4_3_47FAA]
gi|317384692|gb|EFV65654.1| DNA primase/helicase [Bacteroides sp. 3_1_40A]
gi|345456550|gb|EET14796.2| DNA primase/helicase [Bacteroides sp. 4_3_47FAA]
Length = 666
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 170/503 (33%), Positives = 248/503 (49%), Gaps = 51/503 (10%)
Query: 218 LGNELRAYFAERL-ISAETLRRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKYRDF 270
+ E+ Y +R I + L R ++ + + E I FPY +G + N K+RD
Sbjct: 160 MNGEMMEYMVDRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDA 219
Query: 271 NKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 330
K F K E + + +D I+G+ I EGE+D LS+ AG VSVP+GA +
Sbjct: 220 AKHFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGAGGA---- 275
Query: 331 NVPSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWP 389
Q+L + + + IILA D D G L +EL RR+G +RC V W
Sbjct: 276 ---------NLQWLDRFVESHFDDKAEIILAMDTDKRGVELRDELVRRLGVDRCKVVAWG 326
Query: 390 KKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI-DAYYHRTSGDE 448
+ KDANE L+ L++ VE A P+ G+F D +D + D YY +G
Sbjct: 327 EG-----CKDANEYLLKYDLPRLRQQVEQAAEIPLEGVFCPMDEWDTLMDIYY---NGMP 378
Query: 449 FGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK- 507
G TG L+ L G + VTGVP SGKSE++D + + WK S EN
Sbjct: 379 EGADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDEIAMRLLLRHDWKVGYFSPENTP 438
Query: 508 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT-FSLIRCENDSLPSIK 566
+ H RKL+ + + K F + M + E Q +L+ + FS++ E+ S+ S
Sbjct: 439 LAYHYRKLIRRVVGKRF-------EHKGMPLPEAGQAIRYLAQSVFSIMPKEDFSVES-- 489
Query: 567 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 626
VL +A V R GV+ LV+DP+N +HQ P +TET+Y+S++ FA H +
Sbjct: 490 -VLRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQYISRIFDEFSNFAVKHKVLLIL 548
Query: 627 VAHPRQLHNWVGEP----PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRK 682
VAHP +L G P LYDI+GSA F NK D G+V+ RN + + +V V V K
Sbjct: 549 VAHPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGMVVDRNDE-----LGQVLVRVAK 603
Query: 683 VRNKVVGTIGEAFLSYNRVTGEY 705
VR +G G+AF +++ G Y
Sbjct: 604 VRFDHLGGPGDAFFAFSTYNGRY 626
>gi|212691424|ref|ZP_03299552.1| hypothetical protein BACDOR_00916 [Bacteroides dorei DSM 17855]
gi|212666034|gb|EEB26606.1| hypothetical protein BACDOR_00916 [Bacteroides dorei DSM 17855]
Length = 705
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 234/465 (50%), Gaps = 44/465 (9%)
Query: 249 EVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSM 308
E I FPY +G + N K+RD K F K E + + +D I+G+ I EGE+D LS+
Sbjct: 237 EACICFPYLEDGVMKNMKFRDAAKHFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSL 296
Query: 309 EEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPG 367
AG VSVP+GA + Q+L + + + IILA D D G
Sbjct: 297 IAAGLEEVVSVPNGAGGA-------------NLQWLDRFVESHFDDKTEIILAMDTDKRG 343
Query: 368 QALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGL 427
L +EL RR+G +RC V W + KDANE L+ L++ VE A P+ G+
Sbjct: 344 VELRDELVRRLGVDRCKVVAWGEG-----CKDANEYLLKYDLPRLRQQVEQAAEIPLEGV 398
Query: 428 FNFRDYFDEI-DAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDA 486
F D +D + D YY +G G TG L+ L G + VTGVP SGKSE++D
Sbjct: 399 FCPMDEWDTLMDIYY---NGMPEGADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDE 455
Query: 487 LICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK 545
+ + WK S EN + H RKL+ + + K F + M + E Q
Sbjct: 456 IAMRLLLRHDWKVGYFSPENTPLAYHYRKLIRRVVGKRF-------EHKGMPLPEAGQAI 508
Query: 546 AWLSNT-FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 604
+L+ + FS++ E+ S+ S VL +A V R GV+ LV+DP+N +HQ P +TET+
Sbjct: 509 RYLAQSVFSIMPKEDFSVES---VLRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQ 565
Query: 605 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP----PNLYDISGSAHFINKCDNGI 660
Y+S++ FA H + VAHP +L G P LYDI+GSA F NK D G+
Sbjct: 566 YISRIFDEFSNFAVKHKVLLILVAHPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGM 625
Query: 661 VIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
V+ RN + + +V V V KVR +G G+AF +++ G Y
Sbjct: 626 VVDRNDE-----LGQVLVRVAKVRFDHLGGPGDAFFAFSTYNGRY 665
>gi|262407888|ref|ZP_06084436.1| DNA primase/helicase [Bacteroides sp. 2_1_22]
gi|262354696|gb|EEZ03788.1| DNA primase/helicase [Bacteroides sp. 2_1_22]
gi|295084423|emb|CBK65946.1| hypothetical protein [Bacteroides xylanisolvens XB1A]
Length = 612
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 226/470 (48%), Gaps = 38/470 (8%)
Query: 242 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 301
M + E I F Y+ +L+N K+R K F + E + Y +D I G++ II EG
Sbjct: 143 MPQSGKKERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSILGQTSCIIHEG 202
Query: 302 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 361
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 203 ELDAASSIAAGFKSAISVPAGANSNLSWLDRFME-------------THFEDLEEIIIAV 249
Query: 362 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 421
D D G L EL R+G ERC V + + KDANE L G +L+ +E A
Sbjct: 250 DADSAGIRLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQAAE 304
Query: 422 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
P+ G+F D D++ A + G G TGW ++++ G VTGVP +GKS
Sbjct: 305 VPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEEMDKICTYERGRSVYVTGVPGAGKS 362
Query: 482 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540
EW+D L+ + WK S EN + H RKL+EK F N G E +
Sbjct: 363 EWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTEGL---- 416
Query: 541 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
+ +L+ S I + + P VL A V+R G R +V DP N DH Q
Sbjct: 417 LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELVVRRGCRIIVFDPLNRFDHNPQPGQ 474
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKC 656
TET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA F NK
Sbjct: 475 TETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSADFYNKA 534
Query: 657 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
D GI++ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 535 DYGIIVERDKE-----VGATRVYVDKVKFKHLGVGGMASFVYDPVSGRYL 579
>gi|345511634|ref|ZP_08791174.1| DNA primase/helicase [Bacteroides sp. D1]
gi|229443930|gb|EEO49721.1| DNA primase/helicase [Bacteroides sp. D1]
Length = 597
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 226/470 (48%), Gaps = 38/470 (8%)
Query: 242 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 301
M + E I F Y+ +L+N K+R K F + E + Y +D I G++ II EG
Sbjct: 128 MPQSGKKERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSILGQTSCIIHEG 187
Query: 302 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 361
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 188 ELDAASSIAAGFKSAISVPAGANSNLSWLDRFME-------------THFEDLEEIIIAV 234
Query: 362 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 421
D D G L EL R+G ERC V + + KDANE L G +L+ +E A
Sbjct: 235 DADSAGIRLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQAAE 289
Query: 422 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
P+ G+F D D++ A + G G TGW ++++ G VTGVP +GKS
Sbjct: 290 VPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEEMDKICTYERGRSVYVTGVPGAGKS 347
Query: 482 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540
EW+D L+ + WK S EN + H RKL+EK F N G E +
Sbjct: 348 EWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTEGL---- 401
Query: 541 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
+ +L+ S I + + P VL A V+R G R +V DP N DH Q
Sbjct: 402 LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELVVRRGCRIIVFDPLNRFDHNPQPGQ 459
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKC 656
TET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA F NK
Sbjct: 460 TETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSADFYNKA 519
Query: 657 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
D GI++ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 520 DYGIIVERDKE-----VGATRVYVDKVKFKHLGVGGMASFVYDPVSGRYL 564
>gi|423314135|ref|ZP_17292070.1| hypothetical protein HMPREF1058_02682 [Bacteroides vulgatus
CL09T03C04]
gi|392683733|gb|EIY77067.1| hypothetical protein HMPREF1058_02682 [Bacteroides vulgatus
CL09T03C04]
Length = 692
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 234/465 (50%), Gaps = 44/465 (9%)
Query: 249 EVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSM 308
E I FPY +G + N K+RD K F K E + + +D I+G+ I EGE+D LS+
Sbjct: 224 EACICFPYLEDGVMKNMKFRDAAKHFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSL 283
Query: 309 EEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPG 367
AG VSVP+GA + Q+L + + + IILA D D G
Sbjct: 284 IAAGLEEVVSVPNGAGGA-------------NLQWLDRFVESHFDDKTEIILAMDTDRRG 330
Query: 368 QALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGL 427
L +EL RR+G +RC V W + KDANE L+ L++ VE A P+ G+
Sbjct: 331 VELRDELVRRLGVDRCKVVAWGEG-----CKDANEYLLKYDLPRLRQQVEQAAEIPLEGV 385
Query: 428 FNFRDYFDEI-DAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDA 486
F D +D + D YY +G G TG L+ L G + VTGVP SGKSE++D
Sbjct: 386 FCPMDEWDTLMDIYY---NGMPEGADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDE 442
Query: 487 LICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK 545
+ + WK S EN + H RKL+ + + K F + M + E Q
Sbjct: 443 IAMRLLLRHDWKVGYFSPENTPLAYHYRKLIRRVVGKRF-------EHKGMPLPEAGQAI 495
Query: 546 AWLSNT-FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 604
+L+ + FS++ E+ S+ S VL +A V R GV+ LV+DP+N +HQ P +TET+
Sbjct: 496 RYLAQSVFSIMPKEDFSVES---VLRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQ 552
Query: 605 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP----PNLYDISGSAHFINKCDNGI 660
Y+S++ FA H + VAHP +L G P LYDI+GSA F NK D G+
Sbjct: 553 YISRIFDEFSNFAVKHKVLLILVAHPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGM 612
Query: 661 VIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
V+ RN + + +V V V KVR +G G+AF +++ G Y
Sbjct: 613 VVDRNDE-----LGQVLVRVAKVRFDHLGGPGDAFFAFSTYNGRY 652
>gi|299145381|ref|ZP_07038449.1| DNA primase/helicase [Bacteroides sp. 3_1_23]
gi|298515872|gb|EFI39753.1| DNA primase/helicase [Bacteroides sp. 3_1_23]
Length = 612
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 226/470 (48%), Gaps = 38/470 (8%)
Query: 242 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 301
M + E I F Y+ +L+N K+R K F + E + Y +D I G++ II EG
Sbjct: 143 MPQSGKKERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSIVGQTSCIIHEG 202
Query: 302 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 361
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 203 ELDAASSIAAGFQSVISVPAGANSNLSWLDRFME-------------THFEDLKEIIIAV 249
Query: 362 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 421
D D G L EL R+G ERC V + + KDANE L G +L+ +E A
Sbjct: 250 DADSAGIRLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQAAE 304
Query: 422 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
P+ G+F D D++ A + G G TGW ++++ G VTGVP +GKS
Sbjct: 305 VPLEGIFTATDLHDDLRALFDNGFGP--GAETGWEEMDKICTYERGRSVYVTGVPGAGKS 362
Query: 482 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540
EW+D L+ + WK S EN + H RKL+EK F N G E +
Sbjct: 363 EWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTEGL---- 416
Query: 541 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
+ +L+ S I + + P VL A V+R G R +V DP N DH Q
Sbjct: 417 LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELVVRRGCRIIVFDPLNRFDHNPQPGQ 474
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKC 656
TET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA F NK
Sbjct: 475 TETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSADFYNKA 534
Query: 657 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
D GI++ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 535 DYGIIVERDKE-----VGVTRVYVDKVKFKHLGVGGMASFVYDPVSGRYL 579
>gi|336416370|ref|ZP_08596705.1| hypothetical protein HMPREF1017_03813 [Bacteroides ovatus
3_8_47FAA]
gi|335938787|gb|EGN00671.1| hypothetical protein HMPREF1017_03813 [Bacteroides ovatus
3_8_47FAA]
Length = 597
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 226/470 (48%), Gaps = 38/470 (8%)
Query: 242 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 301
M + E I F Y+ +L+N K+R K F + E + Y +D I G++ II EG
Sbjct: 128 MPQSGKKERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSIVGQTSCIIHEG 187
Query: 302 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 361
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 188 ELDAASSIAAGFQSVISVPAGANSNLSWLDRFME-------------THFEDLEEIIIAV 234
Query: 362 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 421
D D G L EL R+G ERC V + + KDANE L G +L+ +E A
Sbjct: 235 DADSAGIRLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQAAE 289
Query: 422 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
P+ G+F D D++ A + G G TGW ++++ G VTGVP +GKS
Sbjct: 290 VPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEEMDKICTYERGRSVYVTGVPGAGKS 347
Query: 482 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540
EW+D L+ + WK S EN + H RKL+EK F N G E +
Sbjct: 348 EWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTEGL---- 401
Query: 541 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
+ +L+ S I + + P VL A V+R G R +V DP N DH Q
Sbjct: 402 LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELVVRRGCRIIVFDPLNRFDHNPQPGQ 459
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKC 656
TET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA F NK
Sbjct: 460 TETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSADFYNKA 519
Query: 657 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
D GI++ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 520 DYGIIVERDKE-----VGVTRVYVDKVKFKHLGVGGMASFVYDPVSGRYL 564
>gi|423213312|ref|ZP_17199841.1| hypothetical protein HMPREF1074_01373 [Bacteroides xylanisolvens
CL03T12C04]
gi|423287009|ref|ZP_17265860.1| hypothetical protein HMPREF1069_00903 [Bacteroides ovatus
CL02T12C04]
gi|392673841|gb|EIY67296.1| hypothetical protein HMPREF1069_00903 [Bacteroides ovatus
CL02T12C04]
gi|392693772|gb|EIY87002.1| hypothetical protein HMPREF1074_01373 [Bacteroides xylanisolvens
CL03T12C04]
Length = 597
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 226/470 (48%), Gaps = 38/470 (8%)
Query: 242 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 301
M + E I F Y+ +L+N K+R K F + E + Y +D I G++ II EG
Sbjct: 128 MPQSGKKERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSILGQTSCIIHEG 187
Query: 302 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 361
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 188 ELDAASSIAAGFKSAISVPAGANSNLSWLDRFME-------------THFEDLEEIIIAV 234
Query: 362 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 421
D D G L EL R+G ERC V + + KDANE L G +L+ +E A
Sbjct: 235 DADSAGIRLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQAAE 289
Query: 422 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
P+ G+F D D++ A + G G TGW ++++ G VTGVP +GKS
Sbjct: 290 VPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEEMDKICTYERGRSVYVTGVPGAGKS 347
Query: 482 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540
EW+D L+ + WK S EN + H RKL+EK F N G E +
Sbjct: 348 EWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTEGL---- 401
Query: 541 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
+ +L+ S I + + P VL A V+R G R +V DP N DH Q
Sbjct: 402 LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELVVRRGCRIIVFDPLNRFDHNPQPGQ 459
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKC 656
TET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA F NK
Sbjct: 460 TETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSADFYNKA 519
Query: 657 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
D GI++ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 520 DYGIIVERDKE-----VGVTRVYVDKVKFKHLGVGGMASFVYDPVSGRYL 564
>gi|423297971|ref|ZP_17276031.1| hypothetical protein HMPREF1070_04696 [Bacteroides ovatus
CL03T12C18]
gi|392664608|gb|EIY58146.1| hypothetical protein HMPREF1070_04696 [Bacteroides ovatus
CL03T12C18]
Length = 597
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 226/470 (48%), Gaps = 38/470 (8%)
Query: 242 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 301
M + E I F Y+ +L+N K+R K F + E + Y +D I G++ II EG
Sbjct: 128 MPQSGKKERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSILGQTSCIIHEG 187
Query: 302 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 361
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 188 ELDAASSIAAGFKSAISVPAGANSNLSWLDRFME-------------THFEDLEEIIIAV 234
Query: 362 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 421
D D G L EL R+G ERC V + + KDANE L G +L+ +E A
Sbjct: 235 DADSAGIRLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQAAE 289
Query: 422 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
P+ G+F D D++ A + G G TGW ++++ G VTGVP +GKS
Sbjct: 290 VPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEDMDKICTYERGRSVYVTGVPGAGKS 347
Query: 482 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540
EW+D L+ + WK S EN + H RKL+EK F N G E +
Sbjct: 348 EWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTEGL---- 401
Query: 541 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
+ +L+ S I + + P VL A V+R G R +V DP N DH Q
Sbjct: 402 LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELVVRRGCRIIVFDPLNRFDHNPQPGQ 459
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKC 656
TET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA F NK
Sbjct: 460 TETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSADFYNKA 519
Query: 657 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
D GI++ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 520 DYGIIVERDKE-----VGVTRVYVDKVKFKHLGVGGMASFVYDPVSGRYL 564
>gi|92118809|ref|YP_578538.1| TOPRIM domain-containing protein [Nitrobacter hamburgensis X14]
gi|91801703|gb|ABE64078.1| toprim domain-containing protein [Nitrobacter hamburgensis X14]
Length = 515
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 161/485 (33%), Positives = 236/485 (48%), Gaps = 63/485 (12%)
Query: 251 VIAFPYWRNGKLVNCKYR-----DFNKKFWQEKDTEKVFYGLDDIE------GESDIIIV 299
++ FPY N + KYR D +K WQ + + FY D ++ G + ++I
Sbjct: 48 ILVFPYLENETEIAAKYRGKPRPDGSKVIWQRANGRRTFYNADVLDDPKLSDGSAALVIT 107
Query: 300 EGEMDKLSMEEAGFLNCVSVPDGAP---SSVSKKNVPSEE--------QDTKYQYLWNCK 348
EGE D L++ AG+ VSVPDGAP + K P E D KY++L N
Sbjct: 108 EGEPDCLAVLSAGYPFAVSVPDGAPPDKDAHGNKLPPVPETADDVDPNNDDKYRFLVNNW 167
Query: 349 MYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLG 408
LK+ R IL TD D PG L +ELARR+GR RC V +P D DANEVL+ G
Sbjct: 168 ERLKKIKRFILMTDDDGPGHRLRDELARRLGRVRCSFVSYPDCGD--RKPDANEVLIRHG 225
Query: 409 PGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALN----ELYNV 464
+ +++ NA YP+ G++ ++ D ++TGW L+ E
Sbjct: 226 ASTVVDMIANATPYPVKGIYRMSEFPDPPAMQ---------PVTTGWGRLDLPVQEGMAG 276
Query: 465 LPGELTI---VTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK-HI 520
L EL + V G+P SGKS W L NI GW + + E KV+ + +KLL ++
Sbjct: 277 LMMELGLFMTVLGIPGSGKSTWTTQLAANIARVHGWNIGIATFEMKVKPYMQKLLRNAYL 336
Query: 521 KKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSL---PSIKWVLDLAKAAVL 577
+P E + + ++ F + CE D P+I WVLD A AV+
Sbjct: 337 GQPASEVH-------PLDPRLKAADQFIEQRFMFMSCEIDDDAEDPTIDWVLDRASDAVI 389
Query: 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV 637
R G+ L+IDP+NEL+H R ++ TEYV + + +KRFA+ + V V HP +
Sbjct: 390 RFGLNVLIIDPWNELEHHRRRDESLTEYVGRAIKKLKRFARVNNVLVIVVIHPTKEGGLK 449
Query: 638 GEPP-NLYDISGSAHFINKCDNGIVI---HRNRDPEAGPIDRVQVCVRKVRNKVVGTIGE 693
G +LYD + S+H++NK D GI I H+N+ ++ V V K+R++ G G
Sbjct: 450 GAGSLSLYDAADSSHWVNKADYGIKIESDHQNQ--------QLTVEVGKIRHRPTGRRGR 501
Query: 694 AFLSY 698
Y
Sbjct: 502 TIFQY 506
>gi|336405392|ref|ZP_08586071.1| hypothetical protein HMPREF0127_03384 [Bacteroides sp. 1_1_30]
gi|335937973|gb|EGM99867.1| hypothetical protein HMPREF0127_03384 [Bacteroides sp. 1_1_30]
Length = 597
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 225/470 (47%), Gaps = 38/470 (8%)
Query: 242 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 301
M + E I F Y+ +L+N K+R K F + E + Y +D I G++ II EG
Sbjct: 128 MPQSGKKERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSIVGQTSCIIHEG 187
Query: 302 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 361
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 188 ELDAASSIAAGFQSVISVPAGANSNLSWLDRFME-------------THFEDLKEIIIAV 234
Query: 362 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 421
D D G L EL R+G ERC V + + KDANE L G +L +E A
Sbjct: 235 DADSAGIRLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLCIAIEQAAE 289
Query: 422 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
P+ G+F D D++ A + G G TGW ++++ G VTGVP +GKS
Sbjct: 290 VPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEEMDKICTYERGRSVYVTGVPGAGKS 347
Query: 482 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540
EW+D L+ + WK S EN + H RKL+EK F N G E +
Sbjct: 348 EWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTEGL---- 401
Query: 541 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
+ +L+ S I + + P VL A V+R G R +V DP N DH Q
Sbjct: 402 LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELVVRRGCRIIVFDPLNRFDHNPQPGQ 459
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKC 656
TET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA F NK
Sbjct: 460 TETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSADFYNKA 519
Query: 657 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
D GI++ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 520 DYGIIVERDKE-----VGVTRVYVDKVKFKHLGVGGMASFVYDPVSGRYL 564
>gi|423276974|ref|ZP_17255888.1| hypothetical protein HMPREF1203_00105 [Bacteroides fragilis HMW
610]
gi|404587450|gb|EKA91989.1| hypothetical protein HMPREF1203_00105 [Bacteroides fragilis HMW
610]
Length = 606
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 163/466 (34%), Positives = 221/466 (47%), Gaps = 46/466 (9%)
Query: 249 EVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSM 308
E + F Y+ +GKLVN K+R K F E + Y +D + G + I EGE+D S
Sbjct: 139 ERCLCFNYFEDGKLVNTKFRTLQKHFRMVSGAELIPYHIDALRGTPECIFTEGELDAASF 198
Query: 309 EEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQ 368
G + VSVP GA S++ + E +L+ I +A D D G
Sbjct: 199 MAIGRRDVVSVPSGANSNLQWMDRFVE-------------THLEDKRLIYIAVDTDEAGL 245
Query: 369 ALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLF 428
L EL RR+G ERC V + KDANE L G +L+ +E AE PI G+F
Sbjct: 246 GLRAELLRRLGVERCRVVVYGPG-----CKDANEHLCKYGAESLRIALEQAEEVPIEGVF 300
Query: 429 NFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
+E+ A Y R G G+ TGW + L L IVTG P GKSEW+D L+
Sbjct: 301 TAAGLEEELRALYER--GFTPGVETGWENFDALCTFELRRLMIVTGKPGDGKSEWVDELV 358
Query: 489 CNINEHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAW 547
+ W S EN + H RKL EK + F+ G S +GK +
Sbjct: 359 LRLCLRHHWDIAFFSPENIPIVYHLRKLAEK-LTGCRFQPGCGMS----------EGK-Y 406
Query: 548 LSNTFSLIRCENDSLP----SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 603
L + L LP ++ VL+ + V R G+R LV+DP N L+H P QTET
Sbjct: 407 LCVSRYLTEHVCHILPRGECTLDAVLETGRRLVARRGIRILVVDPLNRLEHSIPPGQTET 466
Query: 604 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP----PNLYDISGSAHFINKCDNG 659
+Y+S +L + FA H C V VAHPR+++ G +YDI+GSA F NK D G
Sbjct: 467 QYLSSVLNRLSAFAVRHQCLVILVAHPRKMNRLPGSGFTPRVEMYDINGSADFFNKADFG 526
Query: 660 IVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
IV+ R+ I ++ V KV+ K +G G A YN V+G Y
Sbjct: 527 IVVERD-----DTIGVARIHVDKVKFKHLGGKGMASFVYNPVSGRY 567
>gi|237712140|ref|ZP_04542621.1| DNA primase/helicase [Bacteroides sp. 9_1_42FAA]
gi|229453461|gb|EEO59182.1| DNA primase/helicase [Bacteroides sp. 9_1_42FAA]
Length = 710
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 163/465 (35%), Positives = 233/465 (50%), Gaps = 44/465 (9%)
Query: 249 EVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSM 308
E I FPY +G + N K+RD K F K E + + +D I+G+ I EGE+D LS+
Sbjct: 242 EACICFPYLEDGVMKNMKFRDAAKHFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSL 301
Query: 309 EEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPG 367
AG VSVP+GA + Q+L + + + IILA D D G
Sbjct: 302 IAAGLEEVVSVPNGAGGA-------------NLQWLDRFVESHFDDKTEIILAMDTDRRG 348
Query: 368 QALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGL 427
L +EL R+G +RC V W + KDANE L+ L++ VE A P+ G+
Sbjct: 349 VELRDELVCRLGVDRCKVVAWGEG-----CKDANEYLLKYDLPRLRQQVEQAAEIPLEGV 403
Query: 428 FNFRDYFDEI-DAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDA 486
F D +D + D YY +G G TG L+ L G + VTGVP SGKSE++D
Sbjct: 404 FCPMDEWDTLMDIYY---NGMPEGADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDE 460
Query: 487 LICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK 545
+ + WK S EN + H RKL+ + + K F + M + E Q
Sbjct: 461 IAMRLLLRHDWKVGYFSPENTPLAYHYRKLIRRVVGKRF-------EHKGMPLPEAGQAI 513
Query: 546 AWLSNT-FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 604
+L+ + FS++ E+ S+ S VL +A V R GV+ LV+DP+N +HQ P +TET+
Sbjct: 514 RYLAQSVFSIMPKEDFSVES---VLRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQ 570
Query: 605 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP----PNLYDISGSAHFINKCDNGI 660
Y+S++ FA H + VAHP +L G P LYDI+GSA F NK D G+
Sbjct: 571 YISRIFDEFSNFAVKHKVLLILVAHPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGM 630
Query: 661 VIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
V+ RN + + +V V V KVR +G G+AF +++ G Y
Sbjct: 631 VVDRNDE-----LGQVLVRVAKVRFDHLGGPGDAFFAFSTYNGRY 670
>gi|302832832|ref|XP_002947980.1| hypothetical protein VOLCADRAFT_88130 [Volvox carteri f. nagariensis]
gi|300266782|gb|EFJ50968.1| hypothetical protein VOLCADRAFT_88130 [Volvox carteri f. nagariensis]
Length = 1522
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 128/342 (37%), Positives = 169/342 (49%), Gaps = 82/342 (23%)
Query: 400 ANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALN 459
A +VL+ G AL+ +V+ A YP+ GL + + E+ +++ G+STGW L+
Sbjct: 1032 AGDVLLEDGREALRWLVDAARPYPVRGLVDVTGLWGELLQHWYGKEQTAAGVSTGWPGLD 1091
Query: 460 ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE-- 517
ELY V PGELT+VTGVPNSGKS W+DAL + AGW+ S E + HA+ L+E
Sbjct: 1092 ELYKVTPGELTVVTGVPNSGKSHWLDALAVQLASGAGWRIAFASFEKSITRHAQNLIELA 1151
Query: 518 -----------------------KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
H +KP F + M+ EF++ W++ F L
Sbjct: 1152 APRCFSPAPPGSLLMSMLAAGPIHHTQKPMFSSQ---GFPLMSPGEFQEALNWINEHFVL 1208
Query: 555 IR---------------------------CENDSLP----------------------SI 565
IR E D+ +I
Sbjct: 1209 IRHADMADEFTAVAAAGGRSGPAGREGIPAEGDAADEGDADVGVVEEEEEAGGPRQPCTI 1268
Query: 566 KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM----VKRFAQHHA 621
WVL A AV R+G+RGLVIDPYNEL+ QR +QTETEYVS +L VKR+AQ H
Sbjct: 1269 DWVLARATQAVYRYGIRGLVIDPYNELE-QRRGAQTETEYVSALLGKGSGRVKRWAQRHL 1327
Query: 622 CHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 663
HVW VAHP+ + W G PP +YDISGSAH+ NK D GIV+H
Sbjct: 1328 VHVWLVAHPKSMEEWDGGPPTMYDISGSAHWYNKADMGIVVH 1369
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 41/190 (21%)
Query: 120 LKIKLKQLGLDIGR-CAPGVENRMLCPKCNGGDSEE-LSLSLFLDEDGFSAVWMCFRA-K 176
L+ +L G+D+ PG +R LCP C G + E LS +L + ED + C+R+ K
Sbjct: 298 LRSQLADRGVDLPEDVLPGEWHRGLCPFCGGDEGREPLSFNLIVSEDAHFVYYRCWRSNK 357
Query: 177 CGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLEL-------EPLGNELRAYFAER 229
CG V+ S+++ + + +R+ +L E L + AYFA R
Sbjct: 358 CG--------VEETVWAESVRRGLQRRDVRQAAPKPQDLGVDEGKREELDEDALAYFAAR 409
Query: 230 LISAETLRRNRVMQKRHGH---------EVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDT 280
I ETLR V Q R E V+ +PY+++G L+
Sbjct: 410 GIRPETLRVAGVFQTRRVPHPLQPGTLLERVVVYPYYKDGVLL--------------PGA 455
Query: 281 EKVFYGLDDI 290
E+V +GLD +
Sbjct: 456 ERVLWGLDQV 465
>gi|293373001|ref|ZP_06619370.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|292632069|gb|EFF50678.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
Length = 617
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 156/470 (33%), Positives = 225/470 (47%), Gaps = 38/470 (8%)
Query: 242 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 301
M + E I F Y+ +L+N K+R K F + E + Y +D I G++ II E
Sbjct: 143 MPQSGKKERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSILGQTSCIIHER 202
Query: 302 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 361
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 203 ELDAASSIAAGFKSAISVPAGANSNLSWIDRFME-------------THFEDLEEIIIAV 249
Query: 362 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 421
D D G L EL R+G ERC V + + KDANE L G +L+ +E A
Sbjct: 250 DADSAGIRLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQAAE 304
Query: 422 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
P+ G+F D D++ A + G G TGW ++++ G VTGVP +GKS
Sbjct: 305 VPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEEMDKICTYERGRSVYVTGVPGAGKS 362
Query: 482 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540
EW+D L+ + WK S EN + H RKL+EK F N G E +
Sbjct: 363 EWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTEGL---- 416
Query: 541 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
+ +L+ S I + + P VL A V+R G R +V DP N DH Q
Sbjct: 417 LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELVVRRGCRIIVFDPLNRFDHNPQPGQ 474
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKC 656
TET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA F NK
Sbjct: 475 TETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSADFYNKA 534
Query: 657 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
D GI++ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 535 DYGIIVERDKE-----VGVTRVYVDKVKFKHLGVGGMASFVYDPVSGRYL 579
>gi|85716575|ref|ZP_01047545.1| toprim domain-containing protein [Nitrobacter sp. Nb-311A]
gi|85696576|gb|EAQ34464.1| toprim domain-containing protein [Nitrobacter sp. Nb-311A]
Length = 515
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 168/528 (31%), Positives = 243/528 (46%), Gaps = 85/528 (16%)
Query: 225 YFAERLISAETLRRNRVMQKRH------GHEV------VIAFPYWRNGKLVNCKYR---- 268
+FA R I E + R + R G + ++ FPY N V KYR
Sbjct: 10 WFAARAIDLEIVSRMGIYSARRDDTGDSGAVIPDASGDILVFPYLENEAEVAAKYRGRPR 69
Query: 269 -DFNKKFWQEKDTEKVFYGLDDIE------GESDIIIVEGEMDKLSMEEAGFLNCVSVPD 321
D +K WQ + + FY D ++ G + ++I EGE D L++ AG+ VSVPD
Sbjct: 70 ADGSKVLWQRANGRRTFYNADVLDDPKLSDGSAALVITEGEPDCLAVLSAGYPFAVSVPD 129
Query: 322 GAP---SSVSKKNVPSEE--------QDTKYQYLWNCKMYLKQASRIILATDGDPPGQAL 370
GAP + K P E D KY++L N LK+ R IL TD D PG L
Sbjct: 130 GAPPDKDAHGNKLPPVPETADDVDPNNDDKYRFLVNNWERLKKIKRFILMTDDDGPGHRL 189
Query: 371 AEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNF 430
+ELARR+GR RC V +P DANEVL+ G + +++ NA YP+ G++
Sbjct: 190 RDELARRLGRVRCSFVTYPDCGG--KKPDANEVLIRHGASTVVDMIANATPYPVKGIYRM 247
Query: 431 RDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP------------GELTIVTGVPNS 478
++ D ++TGW L+ LP G V G+P S
Sbjct: 248 SEFPDPPAMQ---------PVTTGWGRLD-----LPVQEGMAGLMMDLGLFMTVLGIPGS 293
Query: 479 GKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK-HIKKPFFEANYGGSAERMT 537
GKS W L N+ GW + + E KV+ + +KLL ++ +P S
Sbjct: 294 GKSTWTTQLAANLARAHGWNIGIATFEMKVKPYMQKLLRNAYLGEP-------ASGVHPF 346
Query: 538 VEEFEQGKAWLSNTFSLIRCENDSL---PSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH 594
++ F + CE D P+I WVLD A AV+R G+ L+IDP+NEL+H
Sbjct: 347 DPRLRAADQFIEQRFMFMSCEIDDDAEDPTIDWVLDRAGDAVVRFGLNVLIIDPWNELEH 406
Query: 595 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPP-NLYDISGSAHFI 653
R ++ TEYV + + +KRFA+ + V V HP + G +LYD + S+H++
Sbjct: 407 HRRRDESLTEYVGRAIKKLKRFARVNNVLVIVVIHPTKEGGLKGAGSLSLYDAADSSHWV 466
Query: 654 NKCDNGIVI---HRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSY 698
NK D GI I H+N+ ++ V V KVR++ G G Y
Sbjct: 467 NKADYGIKIESDHQNQ--------QLTVEVGKVRHRPTGRRGSTIFEY 506
>gi|393783851|ref|ZP_10372022.1| hypothetical protein HMPREF1071_02890 [Bacteroides salyersiae
CL02T12C01]
gi|392668293|gb|EIY61794.1| hypothetical protein HMPREF1071_02890 [Bacteroides salyersiae
CL02T12C01]
Length = 605
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 159/476 (33%), Positives = 226/476 (47%), Gaps = 42/476 (8%)
Query: 238 RNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDII 297
+ M + E + F Y+ G LVN KYR K F E + Y +D I + I
Sbjct: 127 QTETMPQTGQQENCLCFNYFEEGALVNVKYRSGAKHFKMVAGAELIPYNIDAIADTPECI 186
Query: 298 IVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS--KKNVPSEEQDTKYQYLWNCKMYLKQAS 355
+ EGE+D S G + +SVP GA +++ + V S ++ + Y+
Sbjct: 187 VTEGELDAASFLATGRADAISVPSGANGNLTWLDRFVESHFENKRLIYI----------- 235
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEV 415
A D D G L EL RR G ERC V + + KDANE L+ G +L+
Sbjct: 236 ----AVDTDAAGLKLRAELLRRFGPERCRIVTYGPE-----CKDANEHLVKYGVESLRIA 286
Query: 416 VENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGV 475
+ AE P+ G F D E+ A Y G G TGW + L + L IVTG
Sbjct: 287 LSQAEEVPLEGAFTADDLAVELRALYENGFGP--GAETGWENFDSLCTLELQRLLIVTGT 344
Query: 476 PNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFFEANYGGSAE 534
P SGKSEW+D L+ + W S EN + H RKL EK + F + G
Sbjct: 345 PGSGKSEWVDELVLRLCLRHDWPAGFFSPENIPIVYHLRKLAEKLTARRF-QPGLG---- 399
Query: 535 RMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH 594
MT +E+ +L+ I + D ++ +L + V R G+R VIDP N ++H
Sbjct: 400 -MTEGLYERITRYLAKHVCHILPKEDF--TVDAILSKGRELVARRGIRIFVIDPLNRIEH 456
Query: 595 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEP--PNLYDISGSA 650
QTET+Y+S +L + FA + C V VAHPR+++ G+ P +YDI+GSA
Sbjct: 457 DMRPGQTETQYLSTLLNRLSGFATRNHCLVVLVAHPRKMNRNAITGQTPRPEMYDINGSA 516
Query: 651 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
F NK D G+V+ RD AG V++ V KV+ K +G GEA Y+ V+G Y+
Sbjct: 517 DFYNKADFGVVV--ERDDAAG---VVRIHVEKVKFKHLGRPGEAQFVYDPVSGRYL 567
>gi|147864827|emb|CAN83644.1| hypothetical protein VITISV_004912 [Vitis vinifera]
Length = 198
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 93/108 (86%), Positives = 103/108 (95%)
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGI 660
TETEYVSQMLTM+KRFAQHH+CHVWFVAHPRQLH W G PPN+YDISGSAHFINKCDNGI
Sbjct: 85 TETEYVSQMLTMIKRFAQHHSCHVWFVAHPRQLHQWNGGPPNMYDISGSAHFINKCDNGI 144
Query: 661 VIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708
VIHRNR+PEAGP+D+VQVCVRKVRNKVVGTIG+AFLSY+R++G Y DI
Sbjct: 145 VIHRNRNPEAGPVDQVQVCVRKVRNKVVGTIGDAFLSYDRISGVYTDI 192
>gi|423225958|ref|ZP_17212425.1| hypothetical protein HMPREF1062_04611 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392631232|gb|EIY25208.1| hypothetical protein HMPREF1062_04611 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 604
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 173/582 (29%), Positives = 268/582 (46%), Gaps = 54/582 (9%)
Query: 141 RMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFS 200
+ +CP+CN + + SL +D D +C+ CG+K + Q + ++
Sbjct: 20 KTICPQCNDTRGHKGNKSLSIDLDK----GVCYCHHCGYKLYVPDDTEERERQQRKENYN 75
Query: 201 KMKTI-----REI-----TEDSLELEPLGNELRAYFAERLISAETLRRNRV-MQKRHGHE 249
+ + + R + T S +LE + R A+RL++ + RV + + E
Sbjct: 76 RARKLPSHFRRPVFDPKRTTLSEKLEQYWTQERC-LAQRLLADLHITEERVRLPESCEEE 134
Query: 250 VVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSME 309
+ F Y+ G L+N KYR K F K E + Y +D I + II EGE D +
Sbjct: 135 NCLCFNYFEGGTLINTKYRSGRKHFMMVKGAELIPYNIDAILDTPECIITEGEFDAAAFM 194
Query: 310 EAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQA 369
G + +SVP GA S+++ + E + + I +A D D G+
Sbjct: 195 TVGRKDVISVPAGAQSNLNWMDRFVES-------------HFEPKKLIYIAVDEDSSGRL 241
Query: 370 LAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFN 429
L++EL RR+G +RC V + + KDANE L+ G +L +E AE P+ G+F
Sbjct: 242 LSQELVRRLGSDRCRLVHFGPE-----CKDANEHLIKYGAESLLITLEQAEEIPLEGVFT 296
Query: 430 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALIC 489
D + + + +G + G TGW L+E G L + TG GKSE+ID L+
Sbjct: 297 AEDRQEPLRTLFE--NGLQRGAETGWDNLDENCTFETGRLAVWTGRTGEGKSEFIDELVL 354
Query: 490 NINEHAGWKFVLCSMENKVRE-HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548
+ WK S EN E H KL EK PF MT + + WL
Sbjct: 355 RLCLRHEWKIGFFSPENMPMEYHLAKLAEKLTGHPF------RPGPGMTEALYNRTTRWL 408
Query: 549 SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 608
++ + I ++ + ++ +L+ A+ V R GVR LV+DP N +D Q QTE +Y++
Sbjct: 409 TDNVTHILPDSGNY-TVDCILEKARQLVRRRGVRILVVDPLNRIDQQLEPGQTELQYITS 467
Query: 609 MLTMVKRFAQHHACHVWFVAHPRQLH----NWVGEPPNLYDISGSAHFINKCDNGIVIHR 664
+L + RFA H C V VAHPR+++ N + DI+GSA+F N D + R
Sbjct: 468 LLNKLSRFALQHKCLVILVAHPRKVNRNTTNGELRRVEMNDINGSANFGNMADFCFTVDR 527
Query: 665 NRDPEAGPIDRVQVCVRKVRNKVVGTIGE-AFLSYNRVTGEY 705
N E V + + KVR K +G+ A YNR+ G Y
Sbjct: 528 NDGKEI-----VTIYIDKVRFKHLGSANTCAKFVYNRINGRY 564
>gi|294010982|ref|YP_003544442.1| putative phage DNA primase/helicase [Sphingobium japonicum UT26S]
gi|292674312|dbj|BAI95830.1| putative phage DNA primase/helicase [Sphingobium japonicum UT26S]
Length = 482
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 142/462 (30%), Positives = 233/462 (50%), Gaps = 41/462 (8%)
Query: 250 VVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK--VFYGLDDIEGES----DIIIVEGEM 303
++++ PY G+ +N KYRD K Q D +D + ES +IIVEGE
Sbjct: 35 MILSVPYREGGRTLNHKYRDPLDKARQAMDQGAPLTLLNIDCLSDESLAGQPLIIVEGEW 94
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D L+ AG VSVP+GAP S + ++ +Y + W L + +ILA D
Sbjct: 95 DFLATLTAGKRRVVSVPNGAPKEASGDD--ELQEGARYAWFWRHYDALSRIKSVILAVDN 152
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYP 423
D PG+ALA +L R G ERC V +P KD N+V+++ G L EV++ A+ YP
Sbjct: 153 DEPGKALAADLCRLFGPERCSFVEYPAG-----CKDPNDVVIHSGHQRLVEVLDAAKPYP 207
Query: 424 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEW 483
+ GL+ D F E +Y TG L+EL+ ++P T+ TG GK+ +
Sbjct: 208 VKGLYALDD-FPEQPSYQ--------AWPTGVGELDELFQIVPRTFTVATGYAGQGKTSF 258
Query: 484 IDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 543
+ ++ N+ G S E ++ + + ++ E G + +E +
Sbjct: 259 LMWILANLIRR-GIHVTAASFETDIK----PIFHRKLRAAILET---GEFAQHEPKERDW 310
Query: 544 GKAWLSNTFSLIR---CENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
+ ++I +++ S++ VLDL +A+V+R+G R L+IDP+NE+DH+R +
Sbjct: 311 ADGMIRRYLAIISHSPMDDEDALSVEDVLDLGRASVIRNGTRLLLIDPWNEIDHKRRGDE 370
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP--PNLYDISGSAHFINKCDN 658
+ET+Y + + ++KRFA+ + VW +AHP + G+P P LYDISGSA++ NK D
Sbjct: 371 SETDYTGRAIRLMKRFAKQNDVAVWVIAHPAKPSQLQGKPRMPGLYDISGSANWANKADY 430
Query: 659 GIVIH-RNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYN 699
G+ ++R+ + V KVR + G +G + ++
Sbjct: 431 GLCFQIKSREYWT-----TTIAVTKVRMGLPGKMGSVVIQFD 467
>gi|189465512|ref|ZP_03014297.1| hypothetical protein BACINT_01870 [Bacteroides intestinalis DSM
17393]
gi|189437786|gb|EDV06771.1| hypothetical protein BACINT_01870 [Bacteroides intestinalis DSM
17393]
Length = 604
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 184/605 (30%), Positives = 274/605 (45%), Gaps = 71/605 (11%)
Query: 126 QLGLDI-GRCAPGVENRMLCPKCNG--GDSEELSLSLFLDEDGFSAVWMCFRAKCGWK-- 180
Q G+D GR + + + +CP+CN G + S S+ L E C+ CG+K
Sbjct: 6 QYGIDTKGRNSGKI--KTICPQCNDTRGHKGDKSFSVNLSEG------TCYCHHCGYKLY 57
Query: 181 -GSTSALVDNNRSQSSLKKFSKMKT-IREITEDSLELEPLGNELRAYFAERLISAETLRR 238
+ + + +K S++ + R T D + + L +L Y+ ++ A+ L
Sbjct: 58 VPDDAEERQRQQRREQRRKASQLPSHFRRPTFDPAKAK-LSEKLEKYWTQKRCLAQNL-- 114
Query: 239 NRVMQKRHGHEVVIAFP------------YWRNGKLVNCKYRDFNKKFWQEKDTEKVFYG 286
+ + H E I P Y+ NG L+N KYR K F E + Y
Sbjct: 115 ---LAELHITEECIKLPGSNEIENYLCFNYFENGVLINTKYRSALKHFRMVTGAELIPYN 171
Query: 287 LDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 346
+D I + II EGE D + AG + +SVP GA S+++ + E
Sbjct: 172 IDAIADTPECIITEGEFDACAFMTAGRKDVISVPAGAQSNLTWMDRFVES---------- 221
Query: 347 CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY 406
+ + I +A D D GQAL EL RR+G ERC V + KDANE L+
Sbjct: 222 ---HFEPKKVIYIAADEDGAGQALRHELVRRLGAERCRLVHFGPG-----CKDANEHLIL 273
Query: 407 LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP 466
G +L + AE P+ G+F DY +++ A + +G G TGW +
Sbjct: 274 YGAQSLLITLAQAEEIPLEGVFTAEDYREDLRALFE--NGLCRGADTGWENFDANCTFET 331
Query: 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFF 525
G +V+G+ GKSE++D L+ + WK S EN V H KL+EK F
Sbjct: 332 GRNVVVSGMAGHGKSEFVDELVLRLCLRHEWKIAYFSPENLPVNYHHAKLIEKLTGLQF- 390
Query: 526 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 585
G MT E + WL+ + I ++ +I +L+ A+ V R GVR LV
Sbjct: 391 -----GPGPGMTEELYNHAVNWLTANVTHILPGTEAC-TIDHILEKARQLVYRRGVRILV 444
Query: 586 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQL--HNWVGE--PP 641
IDP N LD Q QTE Y++ +L + RFA H C V VAHPR++ + GE
Sbjct: 445 IDPLNRLDQQLEPGQTELMYITSLLGKLGRFAAQHKCLVILVAHPRKMNRNTATGELRRV 504
Query: 642 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT-IGEAFLSYNR 700
+ DI+GSA+F N D + ++R+ + V V + KVR K +G+ A YNR
Sbjct: 505 EMNDINGSANFGNMSDYCLCVNRDDAKQL-----VTVYIDKVRFKHLGSGYTHAKFVYNR 559
Query: 701 VTGEY 705
+ G Y
Sbjct: 560 INGRY 564
>gi|329958017|ref|ZP_08298419.1| toprim domain protein [Bacteroides clarus YIT 12056]
gi|328522036|gb|EGF49157.1| toprim domain protein [Bacteroides clarus YIT 12056]
Length = 603
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 180/588 (30%), Positives = 268/588 (45%), Gaps = 65/588 (11%)
Query: 141 RMLCPKCNG--GDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKK 198
+ CP+CN G + SLS+ LD+ +C+ CG+ + R Q + +
Sbjct: 20 KTTCPQCNDTRGHKGDRSLSVDLDKG------LCYCHHCGYTLHIPDDAEERRRQERIDR 73
Query: 199 FSKMKTI-----REITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRH------G 247
+ K + R + S E R + ER + E L R+ ++R
Sbjct: 74 YRKSVLLPSHFRRPVFNASKTGRSEALE-RYWTEERCLRQELLDELRITEQREWMPQSEK 132
Query: 248 HEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLS 307
E + F Y+ LVN K+R K F KD E + Y ++ I G +I EGE D +
Sbjct: 133 EENCLCFNYFEGDTLVNTKFRSGQKHFKMVKDAELIPYNINGILGTRQAVITEGEFDACA 192
Query: 308 -MEEAGFLNCVSVPDGAPSSVS--KKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGD 364
M G + +SVP GA S+++ + V S +D + Y+ A D D
Sbjct: 193 LMTATGRRDIISVPAGAQSNLTWIDRFVESHFEDKETVYI---------------AVDED 237
Query: 365 PPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPI 424
G+ L EL RR+G E C VR+ KD+NE L+ G +L ++ AE PI
Sbjct: 238 AAGEVLRRELVRRLGAECCKIVRYGAG-----CKDSNEHLIRYGADSLAICLQQAEEIPI 292
Query: 425 MGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWI 484
G+ D +++ A Y +G + G TGW L+ G L ++TG P GKSE+
Sbjct: 293 EGVATADDCSEQLRALYE--NGLQGGAETGWENLDAHCTFELGRLVVITGRPGDGKSEFT 350
Query: 485 DALICNINEHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 543
D L+ + GWK S EN V H +K+ +K + + F YG MT E ++Q
Sbjct: 351 DELVLRLRLRHGWKTAYYSPENLPVEYHLKKIADKLLGRN-FAPGYG-----MTEELYDQ 404
Query: 544 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 603
+ WL+ + I D I +L A+ V R GVR LVIDP N L+ TE
Sbjct: 405 ARQWLAANVTHI-LPGDGAYRIDDILLKARQLVRRRGVRTLVIDPMNRLEQDS--GMTER 461
Query: 604 EYVSQMLTMVKRFAQHHACHVWFVAHPRQL--HNWVGE--PPNLYDISGSAHFINKCDNG 659
+++ +L + RFAQ + C V VAHPR++ + GE + DI+GSA F N D
Sbjct: 462 DFIRSVLNKLCRFAQRNRCLVILVAHPRKVNRNEATGELRRVEMNDINGSADFGNMTDYC 521
Query: 660 IVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGE-AFLSYNRVTGEYM 706
I + RN + V + + KVR K +G+ G A YN ++G Y
Sbjct: 522 IDVDRNDKKQI-----VTIYIDKVRFKHLGSAGTCAKFVYNFISGRYF 564
>gi|189464137|ref|ZP_03012922.1| hypothetical protein BACINT_00473 [Bacteroides intestinalis DSM
17393]
gi|189437927|gb|EDV06912.1| hypothetical protein BACINT_00473 [Bacteroides intestinalis DSM
17393]
Length = 427
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 154/435 (35%), Positives = 216/435 (49%), Gaps = 41/435 (9%)
Query: 278 KDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS--KKNVPSE 335
KD E + Y +D I + II EGEMD S G + VSVP GA S+++ + +P+
Sbjct: 3 KDAELIPYNIDSILDTPECIITEGEMDAASFVTIGRRDVVSVPSGANSNLTWLDRFIPTH 62
Query: 336 EQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVD 395
+D K Y+ A D D G L +EL RR+G ERC V +
Sbjct: 63 FEDKKTIYI---------------AVDEDSAGLKLRDELLRRLGTERCRIVHFGPG---- 103
Query: 396 HFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW 455
KDANE L G +L +E AE P+ G+F + E+ A Y +G G TGW
Sbjct: 104 -CKDANEHLAQFGAESLGICIEQAEEIPLEGVFTAEELAGELRALYE--NGMSSGAETGW 160
Query: 456 RALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARK 514
++ + L +++G P GKSEW+D L+ + WK S EN + H RK
Sbjct: 161 ENFDKYCTLELQRLLLISGRPGDGKSEWLDELVMRLCLRHQWKVAYFSPENMPIVYHHRK 220
Query: 515 LLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 574
L+EK + F + G MT E +++ +L+ I D SI +L A+
Sbjct: 221 LIEK-LTGFGFNPSVG-----MTEELYQKSVQFLTENVCHI-LPGDEDYSIDTILQKARG 273
Query: 575 AVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH 634
V+R G+R LVIDP N +D + P QTE +Y+S +L + RFA H+ C V VAHPR+++
Sbjct: 274 LVVRKGIRILVIDPLNRIDQRLPPGQTELQYLSSLLNSLSRFATHYHCLVILVAHPRKMN 333
Query: 635 N--WVGEPP--NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 690
G P +YDI GS+ F NK D GI++ RD + G V + V KV+ K +GT
Sbjct: 334 RNPLTGVTPCVGMYDIFGSSDFYNKADFGIIVE--RDDQKG---LVTIHVEKVKFKHLGT 388
Query: 691 IGEAFLSYNRVTGEY 705
G A YN V G Y
Sbjct: 389 PGNATFVYNIVNGRY 403
>gi|294646762|ref|ZP_06724385.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294807707|ref|ZP_06766500.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
gi|292637922|gb|EFF56317.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294445143|gb|EFG13817.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
Length = 436
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 146/434 (33%), Positives = 210/434 (48%), Gaps = 38/434 (8%)
Query: 278 KDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 337
+ E + Y +D I G++ II EGE+D S AGF + +SVP GA S++S + E
Sbjct: 3 QGAELIPYNIDSILGQTSCIIHEGELDAASSIAAGFKSAISVPAGANSNLSWLDRFME-- 60
Query: 338 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 397
+ + II+A D D G L EL R+G ERC V + +
Sbjct: 61 -----------THFEDLEEIIIAVDADSAGIRLRNELINRLGAERCRVVTYGPE-----C 104
Query: 398 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 457
KDANE L G +L+ +E A P+ G+F D D++ A + G G TGW
Sbjct: 105 KDANEHLCKYGIASLRIAIEQAAEVPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEE 162
Query: 458 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLL 516
++++ G VTGVP +GKSEW+D L+ + WK S EN + H RKL+
Sbjct: 163 MDKICTYERGRSVYVTGVPGAGKSEWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLI 222
Query: 517 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAV 576
EK F N G E + + +L+ S I + + P VL A V
Sbjct: 223 EKLTGHRF--QNGCGMTEGL----LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELV 274
Query: 577 LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN- 635
+R G R +V DP N DH QTET+Y+S +L FA H C + V HPR+++
Sbjct: 275 VRRGCRIIVFDPLNRFDHNPQPGQTETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRN 334
Query: 636 -WVGEPP--NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIG 692
G P +YDI+GSA F NK D GI++ R+++ + +V V KV+ K +G G
Sbjct: 335 PVTGITPRVEMYDINGSADFYNKADYGIIVERDKE-----VGATRVYVDKVKFKHLGVGG 389
Query: 693 EAFLSYNRVTGEYM 706
A Y+ V+G Y+
Sbjct: 390 MASFVYDPVSGRYL 403
>gi|294675400|ref|YP_003576016.1| Toprim domain-containing protein [Prevotella ruminicola 23]
gi|294473238|gb|ADE82627.1| Toprim domain protein [Prevotella ruminicola 23]
Length = 610
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 167/600 (27%), Positives = 273/600 (45%), Gaps = 69/600 (11%)
Query: 121 KIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWK 180
K LK G+ I RC CP C+ + + LD + + C+ CG+K
Sbjct: 18 KPDLKAPGMTIVRCK--------CPDCSDTRKHQDEHCVRLDT--MTGLGKCY--NCGFK 65
Query: 181 GSTSALV-DNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRN 239
S+ V D N+ + KK K+ D+ +L P+ Y +R I +T +
Sbjct: 66 FVISSKVPDYNKKRGYQKKKFKLP-------DTSKLRPIDGIGINYLLDRKIQPQTAAKA 118
Query: 240 RVMQKRHGHEVV----IAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESD 295
V + + +AF Y K+VN +Y+ +K F E D E + + +D G+
Sbjct: 119 GVRSATRTFDGIERSCLAFTYREGSKVVNIQYKTTSKDFAVESDCELIPWNIDAAIGQDT 178
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
+I+ EG MD L++ E GF N +SV +GA S V + +++Y +L
Sbjct: 179 LIVTEGMMDALALMECGFDNVISVSNGAESDVRTFD--------RFRY-----SHLDGIR 225
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEV 415
LA D D PG L ++LA G RC V W +D KDANE+LM G A+ +
Sbjct: 226 TFYLAGDMDEPGVELRQKLALYFGEARCRIVEWRVGDDA--AKDANEMLMEHGVDAVLQC 283
Query: 416 VENAELYPIMGLFNFRDYFDEIDAYYHRTS-----GDEFGISTGWRALNELYNVLPGELT 470
+ +A+L PI+G+ + ID Y RT G G + GW ++ PG
Sbjct: 284 INHAQLCPIVGV-------ETIDDYRERTKYIWEHGIAPGKTVGWGEFDDHVQFEPGRTV 336
Query: 471 IVTGVPNSGKSEWIDALICNINEHAGWKFVLCS-----MENKVREHARKLLEKHIKKPFF 525
I+ G PN+GKS + D L+ N+ GWK L S E + A + + +K
Sbjct: 337 IIVGEPNTGKSTFADDLVLNLALQHGWKAALYSPEMFPPERHIERMATTIAGRKFRKELV 396
Query: 526 EANYGGSAERMTVEEFEQGKA--WL-SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR 582
+ G + + E + WL SN F + S +I +L A+ R+G++
Sbjct: 397 QTERGVDYRKPLIPERMADRILDWLCSNVFFITET---SGRTIHKLLHRAEQLQHRYGIQ 453
Query: 583 GLVIDPYNELDHQRPV-SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP- 640
L++DP+N + Q P ++++T + +L ++ FA ++ V HP + GE
Sbjct: 454 QLLLDPFNYI--QLPEGAKSDTMKIGDVLAEIELFAHRTGLLIFVVVHPSKPQK--GEQI 509
Query: 641 PNLYDISGSAHFINKCDNGIV-IHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYN 699
+LY+ SGSA F N+ D G+V ++ ++ +++ V KVR+ +G G +S++
Sbjct: 510 DSLYNASGSAEFRNRADYGLVLVNDDKQCARNGYHLLKIIVDKVRDDAMGHKGTCHVSFD 569
>gi|217978903|ref|YP_002363050.1| hypothetical protein Msil_2768 [Methylocella silvestris BL2]
gi|217504279|gb|ACK51688.1| hypothetical protein Msil_2768 [Methylocella silvestris BL2]
Length = 531
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 133/450 (29%), Positives = 214/450 (47%), Gaps = 47/450 (10%)
Query: 271 NKKFWQEKDTEKVFYGLDDI--EGESDIIIVEGEMDKLSMEEAGFLN--CVSVPDGAPSS 326
+K F K + F+ +D + S I + EGE D L++ EAG +SVP+GA
Sbjct: 109 DKAFVAGKGFKLSFWNIDRVLAAAPSRIYLTEGEFDALALVEAGVSADAVLSVPNGAKER 168
Query: 327 VSKKNVPSEEQDTKYQYLWNCKMY-LKQASRIILATDGDPPGQALAEELARRVGRERCWR 385
+ + P+E++ Y+++ + L + + DGD PG +L ++ + +G R
Sbjct: 169 AA--DAPAEQKG--YEFVDEALLAGLSGTKQFVWCGDGDGPGLSLRADMVKLLGAARFHF 224
Query: 386 VRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL-YPIMGLFNFRDYFDEIDAYYHRT 444
V WP D KDAN++L+ GP AL+ +VEN L +P+ GL+ R+ + R
Sbjct: 225 VDWP-----DGCKDANDLLVTDGPEALRALVENGALPWPVAGLYRMRELPEPAPLTLWRP 279
Query: 445 SGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504
E+ + P L++VTG P GK+ L N+ + S
Sbjct: 280 GFPEW---------ESKVMLAPRTLSVVTGHPGHGKTALWSQLWFNVVRAYDVGICVASF 330
Query: 505 ENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPS 564
E + + H R+ L GG + +T E AW+ + L + P+
Sbjct: 331 ETRPKPHLRRQLRTLFA--------GGLEKDLTEGEIAAADAWIDERY-LFVVHPEQKPT 381
Query: 565 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624
++W LD+A+ AV+RHG R + +DP+N L+ R +++ET+Y+ + L + FA CHV
Sbjct: 382 LEWFLDMAEVAVIRHGARIVQVDPWNRLEGARERNESETDYIGRCLRTIHAFAHDLNCHV 441
Query: 625 WFVAHPRQLHNW-VGEPPNLYDISGSAHFINKCDNGIVIHR-------NRDPEAGPIDRV 676
+AHP ++ + G PP+L DISGS H+ N D G V+HR NR EA
Sbjct: 442 QVLAHPAKMDSARRGSPPSLEDISGSKHWDNMVDQGFVVHRPEIFDGSNRKTEAA----- 496
Query: 677 QVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
+ RK R + +G + L Y+ G Y+
Sbjct: 497 -LYHRKARFEELGFPCKLNLDYSLAKGRYV 525
>gi|386811700|ref|ZP_10098925.1| conserved hypothetical protein [planctomycete KSU-1]
gi|386403970|dbj|GAB61806.1| conserved hypothetical protein [planctomycete KSU-1]
Length = 592
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 143/540 (26%), Positives = 237/540 (43%), Gaps = 70/540 (12%)
Query: 144 CPKCNGG-DSEELSLSLFLDEDGFSAVWMCFRAK-CGWKGSTSALVDNNRSQSSLKKFSK 201
CP C GG +E+ +L + + F+ C R C KG+ L + ++ + +
Sbjct: 26 CPFCKGGPKNEKYKFALNVTKRTFN----CKRLNNCDKKGTFRQLCEKFGEEADRNEVNS 81
Query: 202 MKTIRE---ITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWR 258
+ ++ L P G + YF +R IS +TL R V + IAF Y
Sbjct: 82 QRNYKKPKAYIMPKTALTPFGQTIGEYFKKRGISQQTLERREVSECNGA----IAFLYRE 137
Query: 259 NGKLVNCKYRDFNK--KFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 316
GKLV KYR K K W+E+ + VF+G+D + + ++IVEGE D L+++E N
Sbjct: 138 EGKLVLVKYRTPQKEPKHWREEGGKPVFWGMDLCDPQYPLVIVEGEPDALALDECNIKNA 197
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
+SVP GA + NC +L Q +I + D D G+ + ++L
Sbjct: 198 ISVPSGAED---------------LSCIENCWEWLNQFKKIKIWGDNDEAGKKMVDKLIL 242
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 436
R+G+ RC+ V P +KDANE LM G ++++ VE A P+ G+ D
Sbjct: 243 RLGQFRCFIVNSP-------YKDANEHLMKEGTESVRKAVETAREVPVAGIKRLADV--- 292
Query: 437 IDAYYHRTSGDEFGISTGWRALNELYNVLP----GELTIVTGVPNSGKSEWIDALICNIN 492
T D I + +L +L GELT+ TG +SGKS + ++
Sbjct: 293 -------TKLDYSQIERVQSNIKKLDMILGGFRMGELTVWTGFNSSGKSTLLGQMLV--- 342
Query: 493 EHAGWKFVLCSMENKVREHA-RKLLEKHIKKP-----FFEANYGGSAERMTVEEFEQGKA 546
E F + + ++ H ++ + + P F++ ++ E + +
Sbjct: 343 ESIDQDFPVFAYSGELTLHLFKEWIHLQMVGPENLDFFYDYVENHDIAKVKAEVISKLEN 402
Query: 547 WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 606
W + F + + P +LDL + A R+ + +ID N + +++ Y
Sbjct: 403 WYKDMFYVYDSYTTNEPMK--ILDLCEIAARRYDCKVFLID--NLMTTGCDGIKSDNYYQ 458
Query: 607 SQMLTMVK--RFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664
SQ + + K F + + HV VAHPR+ + N DI+GS + ++ DN I IHR
Sbjct: 459 SQSIFVGKLVEFTKRYNVHVHLVAHPRKTVGML----NKMDIAGSGNITDRADNVIGIHR 514
>gi|159465173|ref|XP_001690797.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279483|gb|EDP05243.1| predicted protein [Chlamydomonas reinhardtii]
Length = 720
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 98/176 (55%), Gaps = 33/176 (18%)
Query: 564 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623
+I WVL A AV RHG+RGLVIDPYNEL+ QR SQ+ETEY+S ML+ VKR+AQ H H
Sbjct: 540 TIDWVLGKATQAVYRHGIRGLVIDPYNELEQQR-GSQSETEYISAMLSKVKRWAQRHMVH 598
Query: 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR------------------- 664
VW VAHP+ W G PP++YDISGSAH+ NK D G+V+HR
Sbjct: 599 VWLVAHPKSFEEWDGSPPSMYDISGSAHWYNKADMGVVVHRYTRVAMDAALKKYQAAAAS 658
Query: 665 -----------NRDPEAGPIDRVQVCVR--KVRNKVVGTIGEAFLSYNRVTGEYMD 707
R P A + ++ K RNK G G+ L+Y++ ++D
Sbjct: 659 SAELQSKLERLKRKPVALTFSETETLIKVVKARNKTSGAQGDYVLNYSKEQCRFLD 714
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 408 GPGALKEVVE-NAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP 466
GP AL +VE A YP+ GL + +DEI +++ +STGW L+E+Y V P
Sbjct: 329 GPEALTWLVEQGARPYPVKGLMHVGGLWDEIIRHWYGKEATAAAVSTGWPGLDEVYRVTP 388
Query: 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 526
GELTIVTGVPNSGKS W+DAL + W+ S E V +H + L+E + F
Sbjct: 389 GELTIVTGVPNSGKSHWLDALAVQLANVHEWRVGFASFEKSVVKHGQNLIELAARTSMFT 448
Query: 527 ANYGGSAERMTVEEFEQGKAWLSNTFSLIR 556
+ + MT ++F W++ F LIR
Sbjct: 449 PD---GRQNMTPDQFHTALDWVNTHFFLIR 475
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 25/170 (14%)
Query: 124 LKQLGLDIGR---CAPGVENRMLCPKCNGGDS--EELSLSLFLDEDGFSAVWM-CFRA-K 176
L + G+D+ +PGV CP C GG+ + + S+ + ED + VW CFRA K
Sbjct: 54 LAEAGVDLPEEVASSPGVFLYRTCPVCGGGEGGHDPNTFSMMVAED-YKFVWYRCFRANK 112
Query: 177 CG-----W-KGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL 230
C W +G T L + +L + + +E+ ++ E L + AYFA R
Sbjct: 113 CAASDKVWAEGVTRKLARADAEGGALPEVVPAPSRQELQPEANEW--LDADALAYFAARG 170
Query: 231 ISAETLRRNRVMQKRH-GHEV--------VIAFPYWRNGKLVNCKYRDFN 271
IS TLR V Q R H V+ +PY G +VN + D +
Sbjct: 171 ISPATLRAAGVYQARDVPHPTLPGVSLPRVVVYPYTLRGVVVNATFHDIH 220
>gi|383112843|ref|ZP_09933629.1| hypothetical protein BSGG_0300, partial [Bacteroides sp. D2]
gi|313692765|gb|EFS29600.1| hypothetical protein BSGG_0300, partial [Bacteroides sp. D2]
Length = 315
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 144/296 (48%), Gaps = 20/296 (6%)
Query: 416 VENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGV 475
+E A P+ G+F D D++ A + G G TGW ++++ G VTGV
Sbjct: 2 IEQAAEVPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEEMDKICTYERGRSVYVTGV 59
Query: 476 PNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAE 534
P +GKSEW+D L+ + WK S EN + H RKL+EK F N G E
Sbjct: 60 PGAGKSEWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTE 117
Query: 535 RMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH 594
+ + +L+ S I + + P VL A V+R G R +V DP N DH
Sbjct: 118 GL----LANSENFLTENVSHISLKGNVSPD--RVLAKAHELVVRRGCRIIVFDPLNRFDH 171
Query: 595 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSA 650
QTET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA
Sbjct: 172 NPQPGQTETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSA 231
Query: 651 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
F NK D GI++ R+++ + +V V KV+ K +G G Y+ V+G Y+
Sbjct: 232 DFYNKADYGIIVERDKE-----VGVTRVYVDKVKFKHLGVGGMVSFIYDPVSGRYL 282
>gi|451941130|ref|YP_007461768.1| phage related protein [Bartonella australis Aust/NH1]
gi|451900517|gb|AGF74980.1| phage related protein [Bartonella australis Aust/NH1]
Length = 613
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 130/466 (27%), Positives = 211/466 (45%), Gaps = 58/466 (12%)
Query: 217 PLGNE----LRAYF-AERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYRDF 270
P G+E ++ Y ER I E L+R R+ +K G+ ++ FP+++ +G L K R
Sbjct: 113 PTGDEPHNLVKTYLHKERHIPLEILKRYRIKEK--GNSII--FPFYKPDGTLALVKER-L 167
Query: 271 NKKFWQEKDT----EKVFYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPS 325
+ + K T E + +G + + +++I EGE+D LS+ G+ VS+P G S
Sbjct: 168 AEAGAKAKPTASQCEPILFGWQALSSKDRELVITEGEIDALSLAAYGY-AAVSIPFGGGS 226
Query: 326 SVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWR 385
K+N E D +L+ +I LATD D PG+ A E+A R+GR RC+R
Sbjct: 227 G-GKQNWIENEFD-----------HLEAFEKIFLATDMDTPGELAAIEIANRLGRHRCYR 274
Query: 386 VRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRT 444
VR P +KDAN+ L L L E A+ + GL DY D++ + +
Sbjct: 275 VRLP-------YKDANDCLKAGLEDSVLSEAFSQAKSFAPEGLHKASDYRDKVISLFWPA 327
Query: 445 SGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICN-INEHAGWKFVLCS 503
G + + LN P ELT+ +G +GKS+ + I + I + + + L S
Sbjct: 328 PEQHLGYTVPYSKLNGKLYFRPAELTLWSGASGAGKSQLLSDCIPHWIAQKS--RLCLAS 385
Query: 504 MENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLP 563
+E K + R+L+++ G E+ T E + +L N L+ E+
Sbjct: 386 LEMKGEQSLRRLIKQT-----------GGREQPTQEMINRVLDFLDN--GLLLYEHVGTS 432
Query: 564 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623
++ +LD+ ++G +ID L + + V +M+ +A +A H
Sbjct: 433 NVDTLLDVFDYCRAKYGCDQFIIDSLMRLGIASDDYTGQEQAVYKMVD----WAVLNAVH 488
Query: 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
+ VAH R+ N E P DI G++ N I I RNR E
Sbjct: 489 IHLVAHARK-SNLDKEVPGTEDIKGTSEIGANAFNIITIWRNRSLE 533
>gi|431810342|ref|YP_007237227.1| putative DNA primase\helicase [Pseudomonas phage AF]
gi|409994719|gb|AFV50665.1| putative DNA primase\helicase [Pseudomonas phage AF]
Length = 599
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 117/500 (23%), Positives = 218/500 (43%), Gaps = 61/500 (12%)
Query: 224 AYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKY-----RDFNKKFWQEK 278
AY R ++ ET++ ++ ++ I FP+ R+G+L++ K +D KK K
Sbjct: 126 AYLKGRGLTEETIKAFKIGEQGRN----ILFPFLRDGQLIHWKTLGVDRQDGKKKIMAAK 181
Query: 279 DTEKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 337
D+E +G I ++ ++ I EGE+D +S + G +SVP G + + + E +
Sbjct: 182 DSEPCLFGWQAIPSDAREVTITEGEIDAMSAWQYG-RPALSVPMGGGTGAKQNWIEHEYK 240
Query: 338 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 397
+ L++ I L D D PGQ +E+ +R+GRERC V+ K+ F
Sbjct: 241 N------------LERFDVIYLCLDDDAPGQEATDEIIKRLGRERCRVVKLGCKDFNTTF 288
Query: 398 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 457
+Y + + E A+ L ++ D++ A + + + G+ W
Sbjct: 289 S------LYYDKDDIDQCYEKAKSQDPELLLGVTEFRDQVMAEFFEKNPIQLGMPNPWDK 342
Query: 458 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 517
++ E+TI TG GKS+ + + +G KF + SME AR+ L+
Sbjct: 343 AKDMIKFRSAEVTIWTGFSGHGKSQML-GYVAYRGMLSGSKFCVASMEMP----ARRTLQ 397
Query: 518 KHIKKPFFEANYGGSAERMTVEEFEQ---GKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 574
+ I++ A+ R V+ Q G+ W+ + +N +L+
Sbjct: 398 RMIRQAAGMAH----PSRGYVDAILQSMAGQLWIYDRLGAADIDN--------MLETFTY 445
Query: 575 AVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH 634
A R+GV ++D +L V++ + +++ + FA HV VAHP++L
Sbjct: 446 AARRYGVDQFIVDSLAKLG----VAEDDYNGQKKLIEKLVAFAHETGAHVHLVAHPKKLE 501
Query: 635 NWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA-------GPIDRVQVCVRKVRNKV 687
+ + P +D+ G + DN I + RN+ EA G + V + ++
Sbjct: 502 D-ESKAPGKHDVRGGVVITDLVDNVISVWRNKRKEARAEAGDDGIENEADVHAIISKQRL 560
Query: 688 VGTIGEAFLSYNRVTGEYMD 707
G G+ L ++ +G+Y++
Sbjct: 561 TGVEGKIALWFDPASGQYLE 580
>gi|420137468|ref|ZP_14645449.1| hypothetical protein PACIG1_0948 [Pseudomonas aeruginosa CIG1]
gi|403249775|gb|EJY63250.1| hypothetical protein PACIG1_0948 [Pseudomonas aeruginosa CIG1]
Length = 603
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 127/502 (25%), Positives = 215/502 (42%), Gaps = 66/502 (13%)
Query: 224 AYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDF-----NKKFWQEK 278
AY R ++ ET++ ++ + G +V FPY RNG L++ K KK
Sbjct: 128 AYLKGRGLTEETIKAFKIAE--DGQNIV--FPYLRNGSLIHWKKLGVERPGGKKKITTSS 183
Query: 279 DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 337
DTE +G I +G ++ I EGE+D ++ + G +SVP G ++ + E
Sbjct: 184 DTEPCLFGWQAIPDGIREVTITEGEIDAMTAWQYG-RPALSVPFGGGKDGKQRWIEYEFD 242
Query: 338 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 397
+ L++ I L D D PG EE+ RR+GR+RC V+
Sbjct: 243 N------------LQRFDVIYLCLDDDEPGHQATEEIVRRLGRDRCRLVKL-------GC 283
Query: 398 KDANEVL--MYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW 455
KD NE L +Y + E A+ + L + Y +E+ A ++ + + G+ W
Sbjct: 284 KDFNEALDALYYSADDIAECYAKAKNFDPERLKSVSSYSEEVKAEFYDQNPETIGMELPW 343
Query: 456 RALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGW--KFVLCSMENKVREHAR 513
A P E+TI TG GKS+ ++ L + G +F + SME AR
Sbjct: 344 SAYANKIRFRPSEVTIWTGWSGHGKSQLLNYLAFHGMNRKGSQDRFCIASMEMP----AR 399
Query: 514 KLLEKHIKKPFFEANYGGSAERMTVE---EFEQGKAWLSNTFSLIRCENDSLPSIKWVLD 570
+ L++ ++ +A+ R ++ ++ GK W+ + + +L+
Sbjct: 400 RTLQRMVR----QASGMSCPSRGYIDAILDWLDGKLWIYDQLGTAKTGE--------MLE 447
Query: 571 LAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM--VKRFAQHHACHVWFVA 628
+ A R+GV ++D +L E +Y Q M + FA HV VA
Sbjct: 448 DFRYAARRYGVNHFIVDSLAKL------GMAEDDYNGQKQAMEALVGFAHEMNVHVHLVA 501
Query: 629 HPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID--RVQVCVRKV--R 684
HPR+ + G+PP D+ G A + DN + RN+ E D + Q VR + +
Sbjct: 502 HPRKADD-EGKPPGKLDVRGGAILTDLADNVCTVWRNKRKEMAKGDDYKDQSDVRLIISK 560
Query: 685 NKVVGTIGEAFLSYNRVTGEYM 706
++ G G L +++ + +Y
Sbjct: 561 QRLTGDEGILDLWFDKASNQYF 582
>gi|329954623|ref|ZP_08295683.1| toprim domain protein [Bacteroides clarus YIT 12056]
gi|328527164|gb|EGF54168.1| toprim domain protein [Bacteroides clarus YIT 12056]
Length = 684
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 118/441 (26%), Positives = 197/441 (44%), Gaps = 54/441 (12%)
Query: 252 IAFPYWRNGKLVNCKYRD-------FNKKFWQEKDTEKVF-YGLDDI-------EGESDI 296
IA+ + NG+ VN KYR + K + QE T Y +D I E +
Sbjct: 212 IAYVNYINGQPVNVKYRSCDVSASGYTKCWSQESPTTPCPPYNIDCINPLRIAEENVPRL 271
Query: 297 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 356
I+ EGE D L++ EAG+ +SVP+GA S +SK + +L +
Sbjct: 272 IVTEGERDVLTLHEAGYPYVISVPNGAASDLSKG-------------FEAFRPWLDRVRE 318
Query: 357 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVV 416
+++ D D PG+ L + LA G RC P KD ++VL+ G G ++E++
Sbjct: 319 LVICGDCDLPGRTLVKHLADYFG-TRCLFTVLPGG-----CKDISDVLVMYGAGVVREII 372
Query: 417 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGD-EFGISTGWRALNE--LYNVLPGELTIVT 473
++A + + + DEI + SG+ + G G+ L + + G L I T
Sbjct: 373 DSACPHHTSDIITVSERADEI---MNVLSGNYDHGYDVGYGPLTDHVFHPTDQGGLIIAT 429
Query: 474 GVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR-EHARKLLEKHIKKPFFEANYGGS 532
G PNSGK+++++ L C + G S E + +H L+ + K A
Sbjct: 430 GKPNSGKTDFLNDLTCRLMAKTGRYVCYLSFEVPDKNKHMANLIRLMLGKVNTAA----- 484
Query: 533 AERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL 592
T E+ + ++L + + S P+ +++ A+ ++ L+IDPY +
Sbjct: 485 ---YTREQLQPIVSFLDGHMAHLDLHEVS-PTPANIIERAERVKRAVPLKYLIIDPYLFM 540
Query: 593 DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG----EPPNLYDISG 648
+ + TET+ + MLT ++ + + + V VAHPR L G E ++Y ISG
Sbjct: 541 EVETGRYNTETQAIKAMLTQMQAWGRTNGIWVIIVAHPRSLKKLNGKNELEEIDMYTISG 600
Query: 649 SAHFINKCDNGIVIHRNRDPE 669
SA++ N D I R P+
Sbjct: 601 SANWANLADFIFSISRIEQPD 621
>gi|420255615|ref|ZP_14758497.1| hypothetical protein PMI06_08962 [Burkholderia sp. BT03]
gi|398044866|gb|EJL37661.1| hypothetical protein PMI06_08962 [Burkholderia sp. BT03]
Length = 595
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 127/474 (26%), Positives = 203/474 (42%), Gaps = 77/474 (16%)
Query: 222 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKY----RDFN--KKFW 275
+R + R ++ ET+ RV R V+ FP+ R+G+LVN K+ RD N K W
Sbjct: 120 VRDWLLSRGLTDETITSFRVASSREDDAVI--FPFIRDGELVNVKHLLLKRDVNGKKNTW 177
Query: 276 QEKDTEKVFYGLDDIEGESDII-IVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPS 334
Q + E +G I +I I EGE+D +S+ +AG + +SV GA
Sbjct: 178 QAEGAEPCLFGWHMINPAQRVIAITEGEIDAMSLHQAG-IPALSVNAGA----------- 225
Query: 335 EEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV 394
+Q++ + L++ S I L D D PGQ A+E+A R+G +RC V +PK
Sbjct: 226 ----GNHQWIDSDWSKLERFSEIYLCYDNDEPGQNGAKEVANRLGLDRCKIVTFPKA--- 278
Query: 395 DHFKDANEVLMYLGPG-------ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGD 447
KDANE L A ++ EL P+ D++DE+ A +H
Sbjct: 279 ---KDANEYLQASASADDFRRCMAEARTLDPEELRPMT------DFWDEVKALFHPAHDQ 329
Query: 448 EFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
+ + + P ELT+ TG GKS + ++ + E G + + S E
Sbjct: 330 IANPVLSFCGEKQFWFEFRPAELTVWTGYSGHGKSLMLSQILIGVMEQ-GERVCVFSGEM 388
Query: 507 KVREHARKLLEK--HIKKP---FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDS 561
+ ++ + + +P F +A Y ER+ WL F+L+
Sbjct: 389 TPKRQGTRMARQLGGVGRPTIAFLDAMYDWLLERI----------WL---FNLV-----G 430
Query: 562 LPSIKWVLDLAKAAVLRHGVRGLVIDPY---NELDHQRPVSQTETEYVSQMLTMVKRFAQ 618
SI +L + R+G+R VID + L+ ++ E V ++ FA+
Sbjct: 431 TASIDRLLTVFTYGYKRYGIRHFVIDSLMMTDVLEDGAGAMTSQKEAVRKLAA----FAR 486
Query: 619 HHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGP 672
+ HV VAHPR+ + P D+SGS+ + DN I I + + P
Sbjct: 487 MNGVHVHLVAHPRKGQD-ERRAPGKMDVSGSSKLTDAADNVIAIWSAQKQDGDP 539
>gi|386065838|ref|YP_005981142.1| hypothetical protein NCGM2_2906 [Pseudomonas aeruginosa NCGM2.S1]
gi|348034397|dbj|BAK89757.1| hypothetical protein NCGM2_2906 [Pseudomonas aeruginosa NCGM2.S1]
Length = 609
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 142/554 (25%), Positives = 228/554 (41%), Gaps = 78/554 (14%)
Query: 148 NGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSL---KKFSKMKT 204
NG + L + L D+ G VW F G T L+D R+ S ++ K+
Sbjct: 38 NGEKGQSLGVHLKGDKAG---VWCDFST-----GETGDLLDLWRAVRSCDMGTALTEAKS 89
Query: 205 IREITEDSLEL--------------EPLGNE--LRAYFAERLISAETLRRNRVMQKRHGH 248
ITE LE + G+E + AY A R + ET+ ++ +K G
Sbjct: 90 YLGITEPKLEAPSRKAYVRPDRPKCKAPGDESPVMAYLAGRGLKPETIAAFKIGEK--GR 147
Query: 249 EVVIAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDI-EGESDIIIVEGE 302
++V FP+ R+G L++ K + KK + KD+E +G I EG ++ I EGE
Sbjct: 148 DIV--FPFLRDGTLIHWKTLCIDRENGKKKIFASKDSEPCLFGWQAIPEGAREVTITEGE 205
Query: 303 MDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATD 362
+D ++ + G +SVP G + + E L + I LA D
Sbjct: 206 IDAMTAWQYG-RPALSVPFGGGKGEKQAWIEHEYS------------RLSRFDVIYLAMD 252
Query: 363 GDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422
D G+ EEL +R+GRERC + K+ F +A + L Y + + A+
Sbjct: 253 NDEAGKQATEELIKRLGRERCRILDLGCKD----FNEALDALFYTRYD-IDDCYAKAKTL 307
Query: 423 PIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSE 482
L + D++ A + + G++T W ++ E+TI TG GKS+
Sbjct: 308 DPEKLVGAETFADDVCAEFFERNPVVMGMATPWEKSHDTIRFRDSEVTIWTGWSGHGKSQ 367
Query: 483 WIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFE 542
++ L + G KF + SME A++ L++ +++ N + EF
Sbjct: 368 LLNYLAFH-GMRQGEKFCIASMEMP----AKRTLQRMVRQA-AGLNLPSRGYIHAILEFL 421
Query: 543 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTE 602
G+ W+ N ++D + A R+GV+ V+D +L E
Sbjct: 422 GGRLWIYNQMGSANTAE--------MIDTFRYAARRYGVKQFVVDSLAKL------GMAE 467
Query: 603 TEYVSQMLTM--VKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGI 660
+Y Q M + FA HV VAHPR+ + P L D+ G A + DN I
Sbjct: 468 DDYNGQKQAMEAIVGFAHEMGVHVHLVAHPRKADDETKLPGKL-DVRGGAILTDLADNVI 526
Query: 661 VIHRNRDPEAGPID 674
+ RN+ E D
Sbjct: 527 TVWRNKKKEVAMKD 540
>gi|218130758|ref|ZP_03459562.1| hypothetical protein BACEGG_02349 [Bacteroides eggerthii DSM 20697]
gi|217987102|gb|EEC53433.1| hypothetical protein BACEGG_02349 [Bacteroides eggerthii DSM 20697]
Length = 659
Score = 116 bits (291), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 125/510 (24%), Positives = 213/510 (41%), Gaps = 76/510 (14%)
Query: 202 MKTIREITEDSLELEPLGNELRAYFAERLISAET-------LRRNRVMQKRHGHEV---- 250
+ I+ +T++ +P R Y A++ IS +T +R + G +
Sbjct: 118 LARIKPLTDEPETADPDQLAARRYLADQGISLKTAVSAHLGCLTHRCFGGKDGKDEKNAA 177
Query: 251 -----VIAFPYWRNGKLVNCKYRDFN------KKFWQEKD--TEKVFYGLDDI------- 290
IA+ + NG+ VN KYR + K W + T Y +D I
Sbjct: 178 GTMYHCIAYVNYVNGQPVNVKYRSCDPSSSGYTKCWSQDSPTTPCPPYNIDCINPLRISE 237
Query: 291 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKN---VPSEEQDTKYQYLWNC 347
E + +I+ EG D L++ EAG+ +SVP+GA S + K VP
Sbjct: 238 ESVARLIVTEGGRDVLTLYEAGYPYVISVPNGAASDLRKSFEAFVP-------------- 283
Query: 348 KMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYL 407
+L Q +++ D D PG+ L + LA G RC P KD ++VL+
Sbjct: 284 --WLDQVRELVICGDCDLPGRTLVKHLADYFG-SRCLFTTLPGG-----CKDISDVLVAY 335
Query: 408 GPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG 467
G G ++E++++A + + DE+ + + G + G
Sbjct: 336 GSGVVREIIDSARPRHTADIITVGERTDEVLNVLRGEYDHGYDVGYGPLTDQVFHPTDQG 395
Query: 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME----NKVREHARKLLEKHIKKP 523
L IVTG PNSGK+++++ L C++ G S E NK H +L+ +
Sbjct: 396 GLIIVTGKPNSGKTDFLNDLTCHLMAKTGRYVCFLSFEVPDKNKHIAHLIRLMLGKVNMT 455
Query: 524 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRG 583
+ T E+ + ++L+ + S P+ +++ A+ ++
Sbjct: 456 AY-----------TREQLQPIVSFLNAHMVHLDLHEIS-PTPTNIIERAERVKRAVPLKY 503
Query: 584 LVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG----E 639
L+IDPY ++ + TET+ + MLT ++ + + + V VAHPR L G E
Sbjct: 504 LIIDPYLFMEMESGRYNTETQAIKAMLTQMQAWGRSNGIWVIIVAHPRSLKKQSGKDELE 563
Query: 640 PPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
++Y ISGSA++ N D I R P+
Sbjct: 564 EIDMYTISGSANWANLADFIFSISRINQPD 593
>gi|317474283|ref|ZP_07933559.1| hypothetical protein HMPREF1016_00538 [Bacteroides eggerthii
1_2_48FAA]
gi|316909593|gb|EFV31271.1| hypothetical protein HMPREF1016_00538 [Bacteroides eggerthii
1_2_48FAA]
Length = 659
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 134/552 (24%), Positives = 225/552 (40%), Gaps = 89/552 (16%)
Query: 173 FRAKCGWKGSTSALVDNNRSQSSL-----------KKFSK--MKTIREITEDSLELEPLG 219
F A G K ++AL N + K S + I+ +T++ +P
Sbjct: 76 FPASAGRKNGSAALAGNVGGGETFVSEVSMIPDDYKHLSPDVLARIKPLTDEPETADPDQ 135
Query: 220 NELRAYFAERLISAET-------LRRNRVMQKRHGHEV---------VIAFPYWRNGKLV 263
R Y A++ IS +T +R + G + IA+ + NG+ V
Sbjct: 136 LAARRYLADQGISLKTAVSAHLGCLTHRCFGGKDGKDEKNAAGTMYHCIAYVNYVNGQPV 195
Query: 264 NCKYRDFN------KKFWQEKD--TEKVFYGLDDI-------EGESDIIIVEGEMDKLSM 308
N KYR + K W + T Y +D I E + +I+ EG D L++
Sbjct: 196 NVKYRSCDPSSSGYTKCWSQDSPTTPCPPYNIDCINPLRISEESVARLIVTEGGRDVLTL 255
Query: 309 EEAGFLNCVSVPDGAPSSVSKKN---VPSEEQDTKYQYLWNCKMYLKQASRIILATDGDP 365
EAG+ +SVP+GA S + K VP +L Q +++ D D
Sbjct: 256 YEAGYPYVISVPNGAASDLRKSFEAFVP----------------WLDQVRELVICGDCDL 299
Query: 366 PGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIM 425
PG+ L + LA G RC P KD ++VL+ G G ++E++++A
Sbjct: 300 PGRTLVKHLADYFG-SRCLFTTLPGG-----CKDISDVLVAYGSGVVREIIDSARPRHTA 353
Query: 426 GLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWID 485
+ + DE+ + + G + G L IVTG PNSGK+++++
Sbjct: 354 DIITVGERTDEVLNVLRGEYDHGYDVGYGPLTDQVFHPTDQGGLIIVTGKPNSGKTDFLN 413
Query: 486 ALICNINEHAGWKFVLCSME----NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 541
L C++ G S E NK H +L+ + + T E+
Sbjct: 414 DLTCHLMAKTGRYVCFLSFEVPDKNKHIAHLIRLMLGKVNMTAY-----------TREQL 462
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
+ ++L+ + S P+ +++ A+ ++ L+IDPY ++ + T
Sbjct: 463 QPIVSFLNAHMVHLDLHEIS-PTPTNIIERAERVKRAVPLKYLIIDPYLFMEMESGRYNT 521
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG----EPPNLYDISGSAHFINKCD 657
ET+ + MLT ++ + + + V VAHPR L G E ++Y ISGSA++ N D
Sbjct: 522 ETQAIKAMLTQMQAWGRSNGIWVIIVAHPRSLKKQSGKDELEEIDMYTISGSANWANLAD 581
Query: 658 NGIVIHRNRDPE 669
I R P+
Sbjct: 582 FIFSISRINQPD 593
>gi|269122498|ref|YP_003310675.1| TOPRIM domain protein [Sebaldella termitidis ATCC 33386]
gi|268616376|gb|ACZ10744.1| TOPRIM domain protein [Sebaldella termitidis ATCC 33386]
Length = 607
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 139/564 (24%), Positives = 245/564 (43%), Gaps = 96/564 (17%)
Query: 143 LCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKF--- 199
+CP C G D + +++ + ++ CF CG KG+ L+ + +KK
Sbjct: 25 ICPFC-GRDKNKFYMNIE------TGLYNCFSGSCGEKGTIETLMKHLGINQKVKKKPVE 77
Query: 200 -SKMKTIREITEDSLELEPLG--------NELRAYFAE-RLISAETLRRNRVMQKRHGHE 249
S+++ +I + +G ++ +A F E R IS ET V +R +
Sbjct: 78 KSEIRNTEKIELNRENYSSIGVLKENKIISKKQAEFLENRGISWETAAEMDVWVRRS--D 135
Query: 250 VVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKV--FYGLDDIEGESDIIIVEGEMDKLS 307
+ F Y +++ KYRD NKK ++ +E + + + + GES +II EGEMD L+
Sbjct: 136 GWLTFIYRNKKRVLAVKYRDINKKDFRLTKSEDINPLFNIHRVTGES-VIICEGEMDVLA 194
Query: 308 MEEAGFLN-CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 366
E G + VSVP+G + +Y W+ +L+ IILA D D
Sbjct: 195 CAEVGMKDKAVSVPNGTNNL------------GWIEYNWD---FLESKKEIILAFDNDTA 239
Query: 367 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMG 426
G+ +E+ +R+ +C + D+ KD N++L+ LG L ++ N + I G
Sbjct: 240 GEKAIKEVLKRLDITKCRYL------DMKGEKDLNDILINLGKVELLNILNNPLEFEIEG 293
Query: 427 LFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWID 485
L +D +E +G I +L++ + GELTIV+G P +GKS ++
Sbjct: 294 L---QDITNE-----KMDTGSTEAIFFEMESLDKQFGGCRFGELTIVSGQPGAGKSTILN 345
Query: 486 ALICN-INE------HAG---------WKFVLCSMENKVRE----HARKLLEKHIKKPFF 525
+IC+ +N+ ++G W + + + + + E H R+ K++ KP
Sbjct: 346 QIICDFVNQDEKVFYYSGEFPKAKAKRWLYTVFAGADSLTEEYDKHKRR--NKYVLKPGI 403
Query: 526 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 585
E Q W N + + + + + K +HG+R
Sbjct: 404 E---------------RQIDNWAKNKIFIY--DKGTEAKQNELFTIMKYGYKKHGIRLFF 446
Query: 586 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYD 645
+D + V+ + E LT + FA + HV+ VAHP++ N + + YD
Sbjct: 447 LDNLMTIGLD-EVNDDKYENQKNFLTELHDFAIEYNVHVFLVAHPKKTENKKIQDLSFYD 505
Query: 646 ISGSAHFINKCDNGIVIHRNRDPE 669
I+GS++ N DN + + R + E
Sbjct: 506 IAGSSNIPNLADNILFMKRLNEKE 529
>gi|423228471|ref|ZP_17214877.1| hypothetical protein HMPREF1063_00697 [Bacteroides dorei
CL02T00C15]
gi|423243734|ref|ZP_17224810.1| hypothetical protein HMPREF1064_01016 [Bacteroides dorei
CL02T12C06]
gi|392636217|gb|EIY30101.1| hypothetical protein HMPREF1063_00697 [Bacteroides dorei
CL02T00C15]
gi|392644624|gb|EIY38362.1| hypothetical protein HMPREF1064_01016 [Bacteroides dorei
CL02T12C06]
Length = 635
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 154/638 (24%), Positives = 256/638 (40%), Gaps = 128/638 (20%)
Query: 144 CPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKF-SKM 202
CPKC ++ L++ + ++ CF A C + G + +NR +K S
Sbjct: 24 CPKCG-------TMHLYISK--AKGLYHCFYAGCDFNGILTDYCKDNRPMFPYQKGDSPS 74
Query: 203 KTIREITEDSLELEPLGNEL-----------------------------------RAYFA 227
T +DS +E NE+ R Y A
Sbjct: 75 NTGTYRPQDSRNVENSVNEVPMLPGDYKALAPTVMQKIKPLDESPDCTDSDQLAARRYLA 134
Query: 228 ERLISAET-------------LRRNRVMQKRHGHEV--VIAFPYWRNGKLVNCKYRDFN- 271
++ IS T + +N ++ + IA+ + +G+ VN KYR +
Sbjct: 135 DQGISLTTAIAAHIGCLRHYCITKNSEDKREQASSIFPCIAYVNYVDGRPVNAKYRSCSP 194
Query: 272 --------------KKFWQEKD--TEKVFYGLDDI-------EGESDIIIVEGEMDKLSM 308
KFW + T Y +D I E +IIVEG D L++
Sbjct: 195 IQSPKPEEGQPLTYSKFWSQDSPTTPCAPYNIDCINPLLVEEEIIPRLIIVEGGKDALTL 254
Query: 309 EEAGFLNCVSVPDGAPSSVSK---KNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDP 365
EAG+ + +SVP GA S ++K +P +L Q I++ D D
Sbjct: 255 MEAGYRHVISVPSGAASDLAKCFEAFIP----------------WLDQVQDIVICGDSDL 298
Query: 366 PGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIM 425
PG+ L + L+ G RC P KD +V+ G ++ V+++A
Sbjct: 299 PGRILVKHLSDYFG-ARCLFTILPGG-----CKDIGDVMKLYGTEVVRNVIDDACACQTT 352
Query: 426 GLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNE--LYNVLPGELTIVTGVPNSGKSEW 483
+ +E+ H + G S G+ L + + G L I+TG+PNSGK+++
Sbjct: 353 DIITVEQRREEVINVLHGKY--DHGYSVGYGPLTDRVFHPTDIGGLIIMTGMPNSGKTDF 410
Query: 484 IDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 543
++ L I +FV C + +V + +KHI + T E+
Sbjct: 411 LNDLTSRIMRDT-ERFV-CYLSFEVPDK-----DKHIAHLVHLLLGKANTTAYTDEQLTP 463
Query: 544 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 603
+L NT + ++ P+ +L A RH ++ LVIDPY ++ Q ++TET
Sbjct: 464 YIDFL-NTHMIHLDMHEVPPTPGNILHRADLIRRRHPLKYLVIDPYLFVEAQSGKNETET 522
Query: 604 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG----EPPNLYDISGSAHFINKCDNG 659
+ + MLT + + + + V VAHPR L G E N+Y ISGSA++ N D
Sbjct: 523 QSIKSMLTRFQSWGRDNHIWVIIVAHPRSLKKIDGKNEMEDINMYTISGSANWANLADFI 582
Query: 660 IVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 697
+ I R +P+ ++ V KVR++ + G + +
Sbjct: 583 LSITRINEPDRA---FTRLDVLKVRDQELCRTGTVYYT 617
>gi|451942529|ref|YP_007463166.1| phage related protein [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
gi|451901916|gb|AGF76378.1| phage related protein [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
Length = 637
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 127/478 (26%), Positives = 207/478 (43%), Gaps = 73/478 (15%)
Query: 220 NELRAYFA-ERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYRDFNKKFWQE 277
N ++ Y ER I E L+R R+ ++ G +++ FP+++ +G L K R + +
Sbjct: 120 NLVKTYLTKERCIPLEILKRYRIEEE--GEKII--FPFYKPDGTLALVKER-LAQAGAKP 174
Query: 278 KDTE----------KVFYGLDDIEGESD--------------IIIVEGEMDKLSMEEAGF 313
K T + F+ D ++ I+I EGE+D LS+ G+
Sbjct: 175 KPTAAHCEPILFGWQAFFSTDHTPTATNHTPLTQALSSTKRTIVITEGEIDALSLAAYGY 234
Query: 314 LNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEE 373
VSVP G S K+ ++ N +L+ I LATD D PG+ A E
Sbjct: 235 -PAVSVPFGGGSG------------GKHNWIENEFDHLESFETIFLATDMDKPGEEAARE 281
Query: 374 LARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRD 432
+A R+GR RC+RVR P+ KDAN+ L + +K +A+ + GL + D
Sbjct: 282 IANRLGRHRCYRVRLPR-------KDANDCLTAGIDAATIKAAFSSAKNFAPEGLHHASD 334
Query: 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICN-I 491
Y D+I + T G + + LN P ELT+ +G +GKS+ + I + I
Sbjct: 335 YKDKIIGLFWPTPEQHLGYTVPYSKLNGKLYFRPAELTLWSGASGAGKSQLLSDCIPHWI 394
Query: 492 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT 551
++ + + L S+E K + R+L ++ G E+ T E E+ +L +
Sbjct: 395 SQKS--RLCLASLEMKGEQSLRRLTKQT-----------GGIEQPTREMIERILHFLDD- 440
Query: 552 FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLT 611
LI E+ S+ +LD+ R+G +ID L + + Q +
Sbjct: 441 -GLILYEHVGKSSVDRLLDVFDYCRARYGCDQFIIDSLMRLG----ICSDDYAGQEQAVY 495
Query: 612 MVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
+ +A +A H+ VAH R+ + P DI G++ N I I RNR E
Sbjct: 496 KMVDWAVLNAVHIHLVAHARK-GGLDKDIPGTEDIKGASEIGANAFNIITIWRNRSLE 552
>gi|218891257|ref|YP_002440123.1| hypothetical protein PLES_25231 [Pseudomonas aeruginosa LESB58]
gi|218771482|emb|CAW27249.1| hypothetical protein PLES_25231 [Pseudomonas aeruginosa LESB58]
Length = 609
Score = 114 bits (286), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 119/459 (25%), Positives = 194/459 (42%), Gaps = 51/459 (11%)
Query: 224 AYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKY-----RDFNKKFWQEK 278
AY A R + ET+ ++ +K G ++V FP+ R+G L++ K + KK + K
Sbjct: 125 AYLAGRGLKPETIAAFKIGEK--GRDIV--FPFLRDGTLIHWKTLCIDRENGKKKIFASK 180
Query: 279 DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 337
D+E +G I EG ++ I EGE+D ++ + G +SVP G + + E
Sbjct: 181 DSEPCLFGWQAIPEGAREVTITEGEIDAMTAWQYG-RPALSVPFGGGKGEKQAWIEHEYS 239
Query: 338 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 397
L + I LA D D G+ EEL +R+GRERC + K+ F
Sbjct: 240 ------------RLSRFDVIYLAMDNDEAGKQATEELIKRLGRERCRILDLGCKD----F 283
Query: 398 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 457
+A + L Y + + A+ L + D++ A + + G++T W
Sbjct: 284 NEALDALFYT-RDDIDDCYAKAKTLDPEKLVGAETFADDVCAEFFERNPVVMGMATPWEK 342
Query: 458 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 517
++ E+TI TG GKS+ ++ L + G KF + SME A++ L+
Sbjct: 343 SHDTIRFRDSEVTIWTGWSGHGKSQLLNYLAFH-GMRQGEKFCIASMEMP----AKRTLQ 397
Query: 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 577
+ +++ N + EF G+ W+ N ++D + A
Sbjct: 398 RMVRQA-AGLNLPSRGYIHAILEFLGGRLWIYNQMGSANTAE--------MIDTFRYAAR 448
Query: 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM--VKRFAQHHACHVWFVAHPRQLHN 635
R+GV+ V+D +L E +Y Q M + FA HV VAHPR+ +
Sbjct: 449 RYGVKQFVVDSLAKL------GMAEDDYNGQKQAMEAIVGFAHEMGVHVHLVAHPRKADD 502
Query: 636 WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID 674
P L D+ G A + DN I + RN+ E D
Sbjct: 503 ETKLPGKL-DVRGGAILTDLADNVITVWRNKKKEVAMKD 540
>gi|212694044|ref|ZP_03302172.1| hypothetical protein BACDOR_03570 [Bacteroides dorei DSM 17855]
gi|345514899|ref|ZP_08794405.1| DNA primase/helicase [Bacteroides dorei 5_1_36/D4]
gi|212663576|gb|EEB24150.1| toprim domain protein [Bacteroides dorei DSM 17855]
gi|345455804|gb|EEO44743.2| DNA primase/helicase [Bacteroides dorei 5_1_36/D4]
Length = 668
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 122/440 (27%), Positives = 194/440 (44%), Gaps = 47/440 (10%)
Query: 273 KFWQEKDTEK--VFYGLDDI-------EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGA 323
KFW + K Y +D I E +IIVEGE D L + EAG+ + +SVP GA
Sbjct: 240 KFWSQDSPTKPCAPYNIDCINPLLVEEETIPRLIIVEGEKDALVLMEAGYRHVISVPSGA 299
Query: 324 PSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERC 383
S ++K S E T + L Q I++ D D PG+ L + L+ G RC
Sbjct: 300 ASDLAK----SFEAFTSW---------LDQVQDIVICGDTDLPGRTLVKHLSDYFG-ARC 345
Query: 384 WRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHR 443
P KD +V+ G ++ V+E+A + +E+ H
Sbjct: 346 LFTTLPGG-----CKDIGDVMNLYGTEVVQSVIEDACACHTTDIITVEQRREEVMNVLHG 400
Query: 444 TSGDEFGISTGWRALNE--LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G S G+ L + + G L I+TG+PNSGK+++++ L I +FV
Sbjct: 401 KY--DHGYSVGYGPLTDRVFHPTDTGGLIIMTGMPNSGKTDFLNDLTSRIMRDT-ERFV- 456
Query: 502 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDS 561
C + +V + +KHI + T E+ +L NT + ++
Sbjct: 457 CYLSFEVPDK-----DKHIAHLIHLLLGKANTTAYTDEQLTPYIDFL-NTHMIHLDMHEV 510
Query: 562 LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHA 621
P+ +L A R ++ LVIDPY ++ Q +TET+ + MLT + + + +
Sbjct: 511 PPTPGNILHRADLVRRRQPLKYLVIDPYLFVEAQSGKGETETQSIKSMLTRFQSWGRENH 570
Query: 622 CHVWFVAHPRQLHNWVG----EPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 677
V VAHPR L G E N+Y ISGSA++ N D + I R +P+ +
Sbjct: 571 IWVIIVAHPRSLKKIDGKNAMEDINMYTISGSANWANLADFILSITRINEPDRA---FTR 627
Query: 678 VCVRKVRNKVVGTIGEAFLS 697
+ V KVR++ + G + +
Sbjct: 628 LDVLKVRDQELCRTGTVYYT 647
>gi|167763642|ref|ZP_02435769.1| hypothetical protein BACSTE_02017 [Bacteroides stercoris ATCC
43183]
gi|167698936|gb|EDS15515.1| toprim domain protein [Bacteroides stercoris ATCC 43183]
Length = 659
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 112/439 (25%), Positives = 191/439 (43%), Gaps = 50/439 (11%)
Query: 252 IAFPYWRNGKLVNCKYRDFNK------KFWQEKDTEKVF---YGLDDI-------EGESD 295
IA+ + NG+ VN KYR + K W + D+ + Y +D I E
Sbjct: 187 IAYVNYINGQPVNVKYRSCDATASGYTKCWSQ-DSPTIPCPPYNIDCINPLLIAEENIPR 245
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
+I+ EGE D L++ EAG+ +SVP+GA S +SK + +L +
Sbjct: 246 LIVTEGERDVLTLREAGYPYVISVPNGAASDLSKG-------------FEAFRPWLDRVQ 292
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEV 415
+++ D D PG+ L + LA G RC P KD ++VL+ G ++E+
Sbjct: 293 ELVICGDSDLPGRTLVKHLADYFG-TRCLFTVLPGG-----CKDISDVLVAYGADVVREI 346
Query: 416 VENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGV 475
+ +A + + + DEI + + + G + G L I TG
Sbjct: 347 IGSACPHRTSDIITVSERADEIMNVLNGNYDHGYDVGYGPLTDRVFHPTDQGGLIIATGK 406
Query: 476 PNSGKSEWIDALICNINEHAGWKFVLCSMENKVR-EHARKLLEKHIKKPFFEANYGGSAE 534
PNSGK+++++ L C + G S E + +H L+ + K A
Sbjct: 407 PNSGKTDFLNDLTCRLMAKTGRNVCYLSFEVPDKNKHMANLIRLMLGKVNTAA------- 459
Query: 535 RMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH 594
T E+ + ++L + S P+ +++ A+ ++ L+IDPY ++
Sbjct: 460 -YTREQLQPIVSFLDGHMVHLDLHEVS-PTPANIIERAERVKRAMPLKYLIIDPYLFMEM 517
Query: 595 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG----EPPNLYDISGSA 650
+ TET+ + MLT ++ + +++ V VAHPR L G E ++Y ISGSA
Sbjct: 518 ETGRYNTETQAIKGMLTQMQAWGRNNGVWVIIVAHPRSLKKLNGKNELEEIDMYTISGSA 577
Query: 651 HFINKCDNGIVIHRNRDPE 669
++ N D I R +P+
Sbjct: 578 NWANLADFIFSISRIEEPD 596
>gi|334124584|ref|ZP_08498585.1| gp61 family protein [Enterobacter hormaechei ATCC 49162]
gi|333388417|gb|EGK59595.1| gp61 family protein [Enterobacter hormaechei ATCC 49162]
Length = 623
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 118/458 (25%), Positives = 197/458 (43%), Gaps = 63/458 (13%)
Query: 225 YFAERLISAETLRRNRVMQK-----RHGHEV-VIAFPYWRNGKLVNCKY----RDFNKKF 274
Y A R I+ ET R +V EV +AFPY RNG+L+ K R KK
Sbjct: 122 YLASRGITRETADRFKVTDAVVWYHDESREVPAVAFPYIRNGELLQVKRIGTERPNGKKL 181
Query: 275 -WQEKDTEKVFYGLDDIEGESDIIIV-EGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 332
E D E +G ++ + ++++ EGE+D ++ + G+ + +SVP G ++ +
Sbjct: 182 IMAEADCEPCLFGWQALDKNTRLVVLCEGEIDCMTFTQLGY-DALSVPFGGGKGAKQQWI 240
Query: 333 PSEEQD-TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 391
E + ++Q +W C D D G+ A+E+ARR+G RC V P
Sbjct: 241 EYEYHNLDRFQEIWLC-------------LDNDNVGREAAKEIARRLGEHRCRMVELPH- 286
Query: 392 NDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDE-IDAYYHRTSGDEF 449
KD N+ LM + ++ E +E A+ + L + D E I+A+ HR +G
Sbjct: 287 ------KDINDCLMNGMDSDSILEYMERAKFFDPDELCSAGDLLQETIEAFEHRDTG--- 337
Query: 450 GISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 509
++ W +LN + GELT+V GV GK+E + + + G + + S+E K
Sbjct: 338 LFTSPWASLNNNFKFRAGELTLVNGVNGHGKTELVGHIAIDAMSQ-GVRTCIASLELKPG 396
Query: 510 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVL 569
+ +L + I S +R EE W S+ + + + +L
Sbjct: 397 KMLARLTRQTI--------CTSSPKR---EEIIMTNEWFSDRLWVFKLTGTA--KADRLL 443
Query: 570 DLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFV 627
++ A R+G+ VID + E +Y Q + + F H CHV V
Sbjct: 444 EIFAYARRRYGIELFVIDNLAK------CGLDEEDYTGQKDFIDTLCDFKNEHNCHVLLV 497
Query: 628 AHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665
H R+ ++ P D+ G+ + DN + + RN
Sbjct: 498 THARKTND--SAPTGKMDVKGTGALTDMPDNVMAVWRN 533
>gi|421161235|ref|ZP_15620196.1| hypothetical protein PABE173_3776 [Pseudomonas aeruginosa ATCC
25324]
gi|404540402|gb|EKA49812.1| hypothetical protein PABE173_3776 [Pseudomonas aeruginosa ATCC
25324]
Length = 609
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 118/459 (25%), Positives = 194/459 (42%), Gaps = 51/459 (11%)
Query: 224 AYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKY-----RDFNKKFWQEK 278
AY A R + ET+ ++ +K G ++V FP+ R+G L++ K + KK + K
Sbjct: 125 AYLAGRGLKPETIAAFKIGEK--GRDIV--FPFLRDGTLIHWKTLCIDRENGKKKIFASK 180
Query: 279 DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 337
D+E +G I EG ++ I EGE+D ++ + G +SVP G + + E
Sbjct: 181 DSEPCLFGWQAIPEGAREVTITEGEIDAMTAWQYG-RPALSVPFGGGKGEKQAWIEHEYS 239
Query: 338 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 397
L + I LA D D G+ EEL +R+GRERC + K+ F
Sbjct: 240 ------------RLSRFDVIYLAMDNDEAGKQATEELIKRLGRERCRILDLGCKD----F 283
Query: 398 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 457
+A + L Y + + A+ L + D++ A + + G++T W
Sbjct: 284 NEALDALFYT-RDDIDDCYAKAKTLDPEKLVGAETFADDVCAEFFERNPVVMGMATPWEK 342
Query: 458 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 517
++ E+TI TG GKS+ ++ L + G KF + SME A++ L+
Sbjct: 343 SHDTIRFRDSEVTIWTGWSGHGKSQLLNYLAFH-GMRQGEKFCIASMEMP----AKRTLQ 397
Query: 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 577
+ +++ N + +F G+ W+ N ++D + A
Sbjct: 398 RMVRQA-AGLNLPSRGYIHAILDFLGGRLWIYNQMGSANTAE--------MIDTFRYAAR 448
Query: 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM--VKRFAQHHACHVWFVAHPRQLHN 635
R+GV+ V+D +L E +Y Q M + FA HV VAHPR+ +
Sbjct: 449 RYGVKQFVVDSLAKL------GMAEDDYNGQKQAMEAIVGFAHEMGVHVHLVAHPRKADD 502
Query: 636 WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID 674
P L D+ G A + DN I + RN+ E D
Sbjct: 503 ETKLPGKL-DVRGGAILTDLADNVITVWRNKKKEVAMKD 540
>gi|395783865|ref|ZP_10463713.1| hypothetical protein ME3_00369 [Bartonella melophagi K-2C]
gi|395425133|gb|EJF91303.1| hypothetical protein ME3_00369 [Bartonella melophagi K-2C]
Length = 645
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 117/457 (25%), Positives = 201/457 (43%), Gaps = 50/457 (10%)
Query: 220 NELRAYF-AERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYR---DFNKKF 274
+E++ Y +R I + L+R R+ + G++++ FP+++ +G+L K R D K
Sbjct: 120 HEVKNYLHTKRHIPLDILKRYRIQED--GNQII--FPFYKPDGRLALVKVRAAQDGAKAK 175
Query: 275 WQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVP 333
E + +G + + ++I EGE+D LS+ G+ +SVP G
Sbjct: 176 PTASHCEPILFGWQALCPTQRTLVITEGEIDALSLAAYGY-PALSVPFGG---------- 224
Query: 334 SEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKND 393
+ K+ ++ N +L+ +I LATD D PG+ A E+A R+GR RC+RV P K+
Sbjct: 225 --GKGGKHAWIENEFDHLEPFEKIFLATDMDKPGEEAALEIAHRLGRHRCYRVHLPCKDA 282
Query: 394 VDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIST 453
D K E +K A+ + GL DY +++ + T G +
Sbjct: 283 NDCLKAGVET------STIKAAFSKAQSFAPEGLKRASDYHNQVIELFWPTPKQHLGYTL 336
Query: 454 GWRALNELYNVLPGELTIVTGVPNSGKSEWI-DALICNINEHAGWKFVLCSMENKVREHA 512
+ LN P ELT+ +G +GKS+ + D ++ I + + + L S+E K +
Sbjct: 337 PYPKLNGKLYFRPAELTLWSGASGAGKSQLLSDCIVHWIAQKS--RLCLASLEMKGEQSL 394
Query: 513 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLA 572
R+L+ + G + T EQ +L + LI E+ I+ +LD+
Sbjct: 395 RRLIRQ-----------TGGEHQPTKTMIEQILHFLDD--GLILYEHVGKSGIQTLLDVF 441
Query: 573 KAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ 632
++G +ID L ++ + Q + + +A +A HV VAH R+
Sbjct: 442 DYCRAKYGCDQFIIDSLMRLG----IAADDYTGQEQAVYKIVDWAILNAVHVHLVAHARK 497
Query: 633 LHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
+ P DI G++ N I I RNR E
Sbjct: 498 -SGIEKDIPGTEDIKGASEIGANAFNIITIWRNRSLE 533
>gi|423713555|ref|ZP_17687815.1| hypothetical protein ME1_00561 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395422271|gb|EJF88476.1| hypothetical protein ME1_00561 [Bartonella vinsonii subsp.
arupensis OK-94-513]
Length = 686
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 169/376 (44%), Gaps = 42/376 (11%)
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
I+I EGE+D LS+ G+ VSVP G S K+ ++ N +L+
Sbjct: 266 IVITEGEIDALSLAAYGY-PAVSVPFGGGSG------------GKHNWIENEFDHLESFE 312
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 414
I LATD D PG+ A E+A R+GR RC+RVR P+ KDAN+ L + +K
Sbjct: 313 TIFLATDMDKPGEEAAREIANRLGRHRCYRVRLPR-------KDANDCLTAGIDAATIKA 365
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 474
+A+ + GL + DY D+I + T G + + LN P ELT+ +G
Sbjct: 366 AFSSAKSFAPEGLHHASDYRDKIIGLFWPTPEQHLGYTVPYPKLNGKLYFRPAELTLWSG 425
Query: 475 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
+GKS+ + I + I++ + + L S+E K + R+L ++ G
Sbjct: 426 ASGAGKSQLLSDCIPHWISQKS--RLCLASLEMKGEQSLRRLTKQ-----------TGGI 472
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
E+ T E E+ ++L + L+ E+ S+ +LD+ R+G +ID L
Sbjct: 473 EQPTREMIERILSFLDD--GLLLYEHVGKSSVDRLLDVFDYCRARYGCDQFIIDSLMRLG 530
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
+ + Q + + +A +A H+ VAH R+ + P DI G++
Sbjct: 531 ----ICSDDYAGQEQAVYKMVDWAVLNAVHIHLVAHARK-GGLDKDIPGTEDIKGASEIG 585
Query: 654 NKCDNGIVIHRNRDPE 669
N I I RNR E
Sbjct: 586 ANAFNIITIWRNRSLE 601
>gi|319406226|emb|CBI79863.1| hypothetical protein BAR15_180096 [Bartonella sp. AR 15-3]
Length = 655
Score = 112 bits (279), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 121/454 (26%), Positives = 199/454 (43%), Gaps = 56/454 (12%)
Query: 228 ERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYR---DFNKKFWQEKDTEKV 283
ER I E L+R R+ ++ G++++ FP+++ +G L K R D E +
Sbjct: 129 ERRIPLEILQRYRIGEE--GNKII--FPFYKPDGTLALVKERLAEDGATAKPTASQCEPI 184
Query: 284 FYGL------DDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 337
+G D + ++I EGE+D LS+ G+ VSVP G K+N E
Sbjct: 185 LFGWQALSFKDCASTDRTLVITEGEIDALSLAAYGY-PAVSVPFGGGKG-GKQNWIENEF 242
Query: 338 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 397
D +L+ I LATD D PG+ A E+A R+GR RC+RVR P
Sbjct: 243 D-----------HLESFETIFLATDMDTPGEEAAFEIAHRLGRHRCYRVRLPG------- 284
Query: 398 KDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWR 456
KDAN L + + E A+ + GL + DY +++ ++ + G + +
Sbjct: 285 KDANACLQAGIDASVIHEAFLQAQSFTPKGLRHVLDYKEQVVNLFYPPAKQHLGYTVPYS 344
Query: 457 ALNELYNVLPGELTIVTGVPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKL 515
LN P ELT+ +G +GKS+ + I + I + + + L S+E K + R+L
Sbjct: 345 KLNGKLYFRPAELTLWSGASGAGKSQLLSDCIPHWIAQKS--RLCLASLEMKGEQSLRRL 402
Query: 516 LEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA 575
++ G ++ T E E+ +L LI E+ S+ +LD+
Sbjct: 403 TKQT-----------GGTDQPTKEMIERVLRFLDT--GLILYEHVGKSSVDALLDIFDYC 449
Query: 576 VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN 635
++G +ID L +S + Q + + +A +A H+ VAH R+ +
Sbjct: 450 RAKYGCDQFIIDSLMRLG----ISSDDYAKQEQAVYRIVDWAVLNAVHIHLVAHTRK-SS 504
Query: 636 WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
+ P+ DI G++ N I I RNR E
Sbjct: 505 LEKDVPSTEDIKGASEIGANAFNIITIWRNRSLE 538
>gi|54298060|ref|YP_124429.1| hypothetical protein lpp2117 [Legionella pneumophila str. Paris]
gi|53751845|emb|CAH13269.1| hypothetical protein lpp2117 [Legionella pneumophila str. Paris]
Length = 610
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 114/486 (23%), Positives = 201/486 (41%), Gaps = 54/486 (11%)
Query: 195 SLKKFSKMKTIREITEDSLELEPL---GNELRAYFA-ERLISAETLRRNRVMQKRHGHEV 250
S+ KF K ++ + L PL + + +Y ER ++AET+ ++ +
Sbjct: 95 SIPKFEGHKPLKFVRPVLKNLSPLLQKTSPIMSYLINERRLTAETIEAYKIGSQNSK--- 151
Query: 251 VIAFPYWRNGKLVNCKYRDF-----NKKFWQEKDTEKVFYGLDDIEGES-DIIIVEGEMD 304
I FPYWR+G+L+ K D K+ E + E +G I + + I EGE+D
Sbjct: 152 -IIFPYWRDGELIFVKQLDLERVNGKKQIAVEPNCEPCLFGWHLIPANARKVTICEGEID 210
Query: 305 KLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGD 364
+S+ + GF +SVP G +K + E + L I L D D
Sbjct: 211 AMSLYQYGF-PALSVPFGGGGGNKQKWLEYEFER------------LAVFDEIYLCFDND 257
Query: 365 PPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYP 423
G EL R+GR RC V+ P KDANE L + + + A +
Sbjct: 258 KEGDIATLELVERLGRHRCRIVKLP-------CKDANECLQAKITQEVIAQCFHTASMLD 310
Query: 424 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEW 483
L + +++ ++ G G + W P EL++ TG+ GKS++
Sbjct: 311 PEELKPAHQFVEQVIDVFYPPVGSHQGYNPPWEKTKGKILFRPTELSLWTGINGHGKSQF 370
Query: 484 IDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 543
+ ++ + + G + + S+E ++LL + ++ G+ E ++E
Sbjct: 371 LGQVVLHAMKE-GARVCIASLEI----MPKRLLMRLTRQ-------AGALESPSIEYIHA 418
Query: 544 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 603
+W + + ++ K +LD+ A R+G+ VID + +LD + +
Sbjct: 419 IHSWYEDKLWIFDLVGNA--KSKRILDVFLYARQRYGINVFVIDSFMKLDIAEDDYKAQK 476
Query: 604 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 663
++ Q+ F H CH+ + HPR+ + +PP D G+ + DN I
Sbjct: 477 NFMEQLCD----FKNQHNCHIHIIVHPRKGTD-ESQPPGKLDNKGTGAISDLADNCFTIW 531
Query: 664 RNRDPE 669
RN+ E
Sbjct: 532 RNKHRE 537
>gi|395792906|ref|ZP_10472327.1| hypothetical protein MEI_00948 [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|395432034|gb|EJF98026.1| hypothetical protein MEI_00948 [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 672
Score = 109 bits (273), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 112/404 (27%), Positives = 179/404 (44%), Gaps = 47/404 (11%)
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
I+I EGE+D LS+ G+ VSVP G S K+ ++ N +L+
Sbjct: 252 IVITEGEIDALSLAAYGY-PAVSVPFGGGSG------------GKHNWIENEFDHLESFE 298
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 414
I LATD D PG+ A E+A R+GR RC+RV P+ KDAN+ L + +K
Sbjct: 299 TIFLATDMDKPGEEAAHEIASRLGRHRCYRVCLPR-------KDANDCLTSGIDAATIKA 351
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 474
+A+ + GL + DY D+I + T G + + LN P ELT+ +G
Sbjct: 352 AFSSAKSFAPEGLHHASDYKDKIIGLFWPTPEQHLGYTVPYPKLNGKLYFRPAELTLWSG 411
Query: 475 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
+GKS+ + I + I++ + + L S+E K + R+L ++ G
Sbjct: 412 ASGAGKSQLLSDCIPHWISQKS--RLCLASLEMKGEQSLRRLTKQ-----------TGGV 458
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
E+ T E E+ ++L + L+ E+ S+ +LD+ R+G +ID L
Sbjct: 459 EQPTREMIERILSFLDD--GLLLYEHVGKSSVDRLLDVFDYCRARYGCDQFIIDSLMRLG 516
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
+ + Q + + +A +A H+ VAH R+ + P DI G++
Sbjct: 517 ----ICSDDYAGQEQAVYKMVDWAVLNAVHIHLVAHARK-GGLDKDIPGTEDIKGASEIG 571
Query: 654 NKCDNGIVIHRNRDPE----AGPIDRVQVCVRKVRNKVVGTIGE 693
N I I RNR E A P + +RK R V+ I +
Sbjct: 572 ANAFNIITIWRNRSLEDKIFAAPRQEEKAELRK-RPSVIMNIAK 614
>gi|189466689|ref|ZP_03015474.1| hypothetical protein BACINT_03064 [Bacteroides intestinalis DSM
17393]
gi|189434953|gb|EDV03938.1| hypothetical protein BACINT_03064 [Bacteroides intestinalis DSM
17393]
Length = 673
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 117/451 (25%), Positives = 187/451 (41%), Gaps = 69/451 (15%)
Query: 252 IAFPYWRNGKLVNCKYRDFN---------------------KKFWQEKD--TEKVFYGLD 288
IA+ + NG+ VN KYR + KFW + T Y +D
Sbjct: 186 IAYVNYVNGQPVNAKYRSCDPSTIKTTSDGNAVGTENPVCYTKFWSQDSPTTPCAPYNID 245
Query: 289 DI-------EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKY 341
I E +I+ EGE D L++ E G+ +SVP+GA S ++K E
Sbjct: 246 CINPLRVSEEHIPRLIVTEGEKDVLTLLETGYPYAISVPNGAASDLAKTFEAFEP----- 300
Query: 342 QYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDAN 401
+L Q I++ D D PG+ L + L G R P KD +
Sbjct: 301 --------WLDQVRDIVICGDRDLPGRTLIKHLTDYFG-ARSLLTTLPGD-----CKDIS 346
Query: 402 EVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL 461
+VL G ++E++E+AE + + +EI H + + G
Sbjct: 347 DVLATYGSNVVREIIESAEAQHTSDIITVSERTNEILDALHGEYDHGYDVGYGPLTDRIF 406
Query: 462 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME----NKVREHARKLLE 517
+ G L I TG PNSGK+++++ L C + G S E NK H +L+
Sbjct: 407 HPTDQGGLIITTGKPNSGKTDFLNDLTCRLMAKTGRYVCYLSFEVPDKNKHIAHLIQLML 466
Query: 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 577
+ ANY T E+ + ++L NT + ++ P+ ++ A
Sbjct: 467 GKVNT----ANY-------TREQLQPIVSFL-NTHMVHLDLHEVSPTPTNIIARADRVRR 514
Query: 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV 637
++ L+IDPY ++ + TET+ + MLT ++ + +++ V VAHPR L
Sbjct: 515 TAPLKYLIIDPYLFMEMETGRYSTETQAIKAMLTQMQAWGRNNNIWVIIVAHPRSLKKQN 574
Query: 638 G----EPPNLYDISGSAHFINKCDNGIVIHR 664
G E ++Y ISGSA++ N D I R
Sbjct: 575 GKNELEDIDMYTISGSANWANLADFIFSISR 605
>gi|427386673|ref|ZP_18882870.1| hypothetical protein HMPREF9447_03903 [Bacteroides oleiciplenus YIT
12058]
gi|425726163|gb|EKU89029.1| hypothetical protein HMPREF9447_03903 [Bacteroides oleiciplenus YIT
12058]
Length = 677
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 117/451 (25%), Positives = 188/451 (41%), Gaps = 69/451 (15%)
Query: 252 IAFPYWRNGKLVNCKYRDFN---------------------KKFWQEKD--TEKVFYGLD 288
IA+ + NG+ VN KYR + KFW + T Y +D
Sbjct: 185 IAYVNYVNGQPVNAKYRSCDPSTVKTTSDGNAIGTENPVCYTKFWSQDSPTTPCAPYNID 244
Query: 289 DI-------EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKY 341
I E +I+ EGE D L++ E G+ +SVP+GA S ++K E
Sbjct: 245 CINPLRVSEEHIPRLIVTEGEKDVLTLLETGYPYAISVPNGAASDLAKTFEAFEP----- 299
Query: 342 QYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDAN 401
+L Q I++ D D PG+ L + L G R P KD +
Sbjct: 300 --------WLDQVRDIVICGDRDLPGRTLIKHLTDYFG-ARGLLTTLPGD-----CKDIS 345
Query: 402 EVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL 461
+VL G ++E++E+AE + + +EI H + + G +
Sbjct: 346 DVLATYGSNVVREIIESAEAQHTSDIITVSERTNEILDALHGEYDHGYDVGYGPLTDHIF 405
Query: 462 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME----NKVREHARKLLE 517
+ G L I TG PNSGK+++++ L C + G S E NK H +L+
Sbjct: 406 HPTDQGGLIITTGKPNSGKTDFLNDLTCRLMAKTGRYVCYLSFEVPDKNKHIAHLIQLML 465
Query: 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 577
+ ANY T E+ + ++L NT + ++ P+ ++ A
Sbjct: 466 GKVNT----ANY-------TREQLQPIVSFL-NTHMVHLDLHEVSPTPTNIIARADRVRR 513
Query: 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV 637
++ L+IDPY ++ + TET+ + MLT ++ + +++ V VAHPR L
Sbjct: 514 TAPLKYLIIDPYLFMEMETGRYSTETQAIKAMLTQMQAWGRNNNIWVIIVAHPRSLKKQN 573
Query: 638 G----EPPNLYDISGSAHFINKCDNGIVIHR 664
G E ++Y ISGSA++ N D I R
Sbjct: 574 GKNELEDIDMYTISGSANWANLADFIFSISR 604
>gi|423716067|ref|ZP_17690284.1| hypothetical protein MEE_01476, partial [Bartonella elizabethae
F9251]
gi|395427387|gb|EJF93483.1| hypothetical protein MEE_01476, partial [Bartonella elizabethae
F9251]
Length = 450
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 167/376 (44%), Gaps = 42/376 (11%)
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
I+I EGE+D LS+ G+ VSVP G + K+ ++ N +L+
Sbjct: 54 IVITEGEIDALSLAAYGY-PAVSVPFGG------------GKGGKHNWIENEFDHLEAFE 100
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 414
I LATD D PG+ A E+A R+GR RC+RVR P+ KDANE L + +K
Sbjct: 101 TIFLATDMDQPGEEAAHEIANRLGRHRCYRVRLPR-------KDANECLTAGIDAATIKA 153
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 474
+A+ + GL DY D++ + G + + L + + P ELT+ +G
Sbjct: 154 AFTSAKSFAPEGLRRASDYKDQVIGLFWPEPEKHLGYTVPYPKLKDKLHFRPAELTLWSG 213
Query: 475 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
+GKS+ + I + I +++ + L S+E K + R+L ++ G
Sbjct: 214 ASGAGKSQLLSDCIPHWIAQNS--RLCLASLEMKGEQSLRRLTKQ-----------TGGL 260
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
E+ T E E+ +L + LI E+ S+ +LD+ R+G +ID L
Sbjct: 261 EKPTKETIERILHFLDD--GLILYEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRLG 318
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
++ + Q + + +A + H+ VAH R+ + P DI G++
Sbjct: 319 ----IASDDYAGQEQAVYKMVDWAVLNTVHIHLVAHARK-GGLDKDIPGTEDIKGASEIG 373
Query: 654 NKCDNGIVIHRNRDPE 669
N I I RNR E
Sbjct: 374 ANAFNIITIWRNRSLE 389
>gi|395779241|ref|ZP_10459736.1| hypothetical protein MCU_01437, partial [Bartonella elizabethae
Re6043vi]
gi|395416083|gb|EJF82487.1| hypothetical protein MCU_01437, partial [Bartonella elizabethae
Re6043vi]
Length = 431
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 167/376 (44%), Gaps = 42/376 (11%)
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
I+I EGE+D LS+ G+ VSVP G + K+ ++ N +L+
Sbjct: 35 IVITEGEIDALSLAAYGY-PAVSVPFGG------------GKGGKHNWIENEFDHLEAFE 81
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 414
I LATD D PG+ A E+A R+GR RC+RVR P+ KDANE L + +K
Sbjct: 82 TIFLATDMDQPGEEAAHEIANRLGRHRCYRVRLPR-------KDANECLTAGIDAATIKA 134
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 474
+A+ + GL DY D++ + G + + L + + P ELT+ +G
Sbjct: 135 AFTSAKSFAPEGLRRASDYKDQVIGLFWPEPEKHLGYTVPYPKLKDKLHFRPAELTLWSG 194
Query: 475 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
+GKS+ + I + I +++ + L S+E K + R+L ++ G
Sbjct: 195 ASGAGKSQLLSDCIPHWIAQNS--RLCLASLEMKGEQSLRRLTKQT-----------GGL 241
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
E+ T E E+ +L + LI E+ S+ +LD+ R+G +ID L
Sbjct: 242 EKPTKETIERILHFLDD--GLILYEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRLG 299
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
+ + V +M+ +A + H+ VAH R+ + P DI G++
Sbjct: 300 IASDDYAGQEQAVYKMVD----WAVLNTVHIHLVAHARK-GGLDKDIPGTEDIKGASEIG 354
Query: 654 NKCDNGIVIHRNRDPE 669
N I I RNR E
Sbjct: 355 ANAFNIITIWRNRSLE 370
>gi|262044714|ref|ZP_06017765.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259037936|gb|EEW39156.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 623
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 117/460 (25%), Positives = 195/460 (42%), Gaps = 57/460 (12%)
Query: 220 NELRAYFAERLISAETLRRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKY----RD 269
N Y A R I+ ET + RV + +AFPY RNG+L+ K R
Sbjct: 117 NHCYDYLASRGITRETADQFRVSDAVVWYHDENREVAAVAFPYIRNGELLQVKRIGTERP 176
Query: 270 FNKKF-WQEKDTEKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSV 327
KK E D E +G ++ ++ +++ EGE+D ++ + G ++ +SVP G
Sbjct: 177 GGKKLIMAEADCEPSLFGWQAMDAKARAVVLCEGEIDCMTYSQLG-ISALSVPFGGGKG- 234
Query: 328 SKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 387
+++Q +Y+Y L + I L+ D D G+ A+E+ARR+G RC V
Sbjct: 235 ------AKQQWIEYEY-----HNLDRFDEIWLSLDNDEVGREAAKEIARRLGEHRCRLVE 283
Query: 388 WPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDE-IDAYYHRTS 445
P KD N+ LM + + + + A+ + L + D E IDA+ HR
Sbjct: 284 LP-------HKDINDCLMAGMSEDDVWQCLGTAKFFDPDELCSAGDLLQETIDAFEHRDV 336
Query: 446 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505
G ++ W +LN + GELT+V GV GK+E + + + G + + S+E
Sbjct: 337 GL---FTSPWASLNSNFKFRAGELTLVNGVNGHGKTELVGHIAVDAMSQ-GVRVCIASLE 392
Query: 506 NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSI 565
K + +L + I + E AE + E+ + W+ F L
Sbjct: 393 LKPGKMLARLTRQTICRKSPE-----RAEIIMTNEWFSDRLWV---FKLT-----GTAKA 439
Query: 566 KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 625
+L++ A R+G+ VID + + E++ + F H CHV
Sbjct: 440 GRLLEIFAYARRRYGIDLFVIDNLAKCGLDEEDYGGQKEFIDTLCD----FKNEHNCHVL 495
Query: 626 FVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665
V H R+ + P D+ G+ + DN + + RN
Sbjct: 496 LVTHARKTNE--AAPTGKMDVKGTGALTDMPDNVMAVWRN 533
>gi|240851150|ref|YP_002972553.1| phage related helicase [Bartonella grahamii as4aup]
gi|240268273|gb|ACS51861.1| phage related helicase [Bartonella grahamii as4aup]
Length = 627
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 167/376 (44%), Gaps = 42/376 (11%)
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
I+I EGE+D LS+ G+ VSVP G S K+ ++ N +L+
Sbjct: 231 IVITEGEIDALSLAAYGY-PAVSVPFGGGSG------------GKHNWIENEFDHLESFE 277
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 414
I LATD D PG+ A E+A R+GR RC+RVR P KDAN+ L + +K
Sbjct: 278 TIFLATDMDQPGEEAAREIASRLGRHRCYRVRLPH-------KDANDCLTAGIDRATIKA 330
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 474
+A+ + GL DY D++ + G + + L + + P ELT+ +G
Sbjct: 331 AFSSAQSFAPEGLRRASDYKDQVIGLFWPEPEKHLGYTVPYPKLKDKLHFRPAELTLWSG 390
Query: 475 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
+GKS+ + I + I + + + L S+E K + R+L ++ G
Sbjct: 391 ASGAGKSQLLSDCIPHWIAQKS--RLCLASLEMKGEQSLRRLTKQT-----------GGL 437
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
E+ T E E+ +L + LI E+ S+ +LD+ R+G +ID L
Sbjct: 438 EKPTKETIERILHFLDD--GLILYEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRLG 495
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
++ + Q + + +A ++ H+ VAH R+ + P+ DI G++
Sbjct: 496 ----IASDDYAKQEQAVYKMVDWAVLNSVHIHLVAHARK-GGLDKDIPSTEDIKGASEIG 550
Query: 654 NKCDNGIVIHRNRDPE 669
N I I RNR E
Sbjct: 551 ANAFNIITIWRNRSLE 566
>gi|319409296|emb|CBI82940.1| hypothetical protein BARSC_190213 [Bartonella schoenbuchensis R1]
Length = 653
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 117/457 (25%), Positives = 199/457 (43%), Gaps = 50/457 (10%)
Query: 220 NELRAYF-AERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYR---DFNKKFW 275
+E++ Y +R I + L+R R+ + G++++ F Y +G L K R + K
Sbjct: 120 HEVKNYLHTKRHIPLDILKRYRIQED--GNQIIFPF-YKPDGTLALVKARAAQEGAKAKP 176
Query: 276 QEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPS 334
E + +G + + ++I EGE+D LS+ G+ +SVP G
Sbjct: 177 TASHCEPILFGWQALCPTQRTLVITEGEIDALSLAAYGY-PALSVPFGG----------- 224
Query: 335 EEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV 394
+ K+ ++ N +L+ +I LATD D PG+ A E+A R+GR RC+RV P
Sbjct: 225 -GKGGKHAWIENEFDHLEPFEKIFLATDMDKPGEEAALEIAHRLGRHRCYRVHLP----- 278
Query: 395 DHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIST 453
KDAN+ L + +K A+ + GL DY +++ + T G +
Sbjct: 279 --CKDANDCLKAGVKASTIKAAFSKAQSFAPEGLRRASDYHNQVIELFWPTPKQHLGYTL 336
Query: 454 GWRALNELYNVLPGELTIVTGVPNSGKSEWI-DALICNINEHAGWKFVLCSMENKVREHA 512
+ LN P ELT+ +G +GKS+ + D ++ I + + + L S+E K +
Sbjct: 337 PYPKLNGKLYFRPAELTLWSGASGAGKSQLLSDCIVHWIAQKS--RLCLASLEMKGEQSL 394
Query: 513 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLA 572
R+L+ + G + T EQ +L + LI E+ I+ +LD+
Sbjct: 395 RRLIRQ-----------TGGDNQPTKTMIEQILHFLDD--GLILYEHVGKSDIQTLLDVF 441
Query: 573 KAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ 632
++G +ID L ++ + Q + + +A +A HV VAH R+
Sbjct: 442 DYCRAKYGCDQFIIDSLMRLG----IAADDYTGQEQAVYKIVDWAILNAVHVHLVAHARK 497
Query: 633 LHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
+ P DI G++ N I I RNR E
Sbjct: 498 -SGIEKDIPGTEDIKGASEIGANAFNIITIWRNRSLE 533
>gi|329963105|ref|ZP_08300885.1| conserved domain protein [Bacteroides fluxus YIT 12057]
gi|328529146|gb|EGF56076.1| conserved domain protein [Bacteroides fluxus YIT 12057]
Length = 656
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 110/436 (25%), Positives = 189/436 (43%), Gaps = 57/436 (13%)
Query: 252 IAFPYWRNGKLVNCKYRDFN-----------------KKFWQEKD--TEKVFYGLDDI-- 290
IA+ + NG+ VN KYR + KFW + T + +D +
Sbjct: 173 IAYVNYVNGQPVNVKYRSCDPTSTAKADSNDVQSVEYTKFWYQDSPTTPCAPFNIDCLNP 232
Query: 291 -----EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLW 345
E +II EG D L++ +AG+ +SVP+GA S +SK E
Sbjct: 233 LLVAEENIRKLIITEGGKDVLTISQAGYPFVISVPNGAASDLSKSFEAFEP--------- 283
Query: 346 NCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLM 405
+L+Q I++ D D PG+ L + L G RC P KD ++VL
Sbjct: 284 ----WLEQVQDIVICGDTDLPGRTLTKHLTDYFGN-RCLLTTLPGD-----CKDISDVLT 333
Query: 406 YLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL 465
G + E++E+A+ + + DE+ + + + G + +
Sbjct: 334 KYGVEIVHEIIESAKPRHTADIITVNERTDEVLSVLRGEYDHGYSVGHGPLTDHIFHPDD 393
Query: 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 525
G L I TG PNSGK+++++ L C + G ++V C + +V + KHI +
Sbjct: 394 QGGLIIETGQPNSGKTDFLNDLTCRLMAKTG-RYV-CYLSFEVPDK-----NKHIAQLIH 446
Query: 526 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 585
+ T + + +L NT + ++ P+ + +LD A ++ L+
Sbjct: 447 LMLGKVNTTAYTQIQLQSIIDYL-NTHMVHLDLHEVSPTPEHILDRADIVRRTSPLKYLI 505
Query: 586 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG----EPP 641
IDPY ++ + + TET+ + MLT ++ + + + V VAHPR+L G E
Sbjct: 506 IDPYLFMEVETGQNSTETQAIKNMLTQLQSWGRSNKIWVIIVAHPRKLQKLNGKNELEDI 565
Query: 642 NLYDISGSAHFINKCD 657
++Y I+GSA++ N D
Sbjct: 566 DMYTIAGSANWANLAD 581
>gi|224540163|ref|ZP_03680702.1| hypothetical protein BACCELL_05076 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518197|gb|EEF87302.1| hypothetical protein BACCELL_05076 [Bacteroides cellulosilyticus
DSM 14838]
Length = 656
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 144/581 (24%), Positives = 243/581 (41%), Gaps = 89/581 (15%)
Query: 176 KCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAET 235
+ G S ++ + + + + FSK I+ +T+D + R Y A++ IS +T
Sbjct: 83 RTGKTTSEVPMIPEDYKKLTPEVFSK---IKPLTDDPETTDRDQLTARRYLADQGISLKT 139
Query: 236 LRRNRVMQKRH-------------GHEVVIAFPYWRNGKLVNCKYRDFN----------- 271
R+ H +A+ + NG+ VN KYR +
Sbjct: 140 AIEARIGCLTHRCFGKDEDSKNTGTMHHCVAYVNYLNGQPVNAKYRSCDPSTVKPTDERE 199
Query: 272 ----------KKFWQEKD--TEKVFYGLDDIE----GESDI---IIVEGEMDKLSMEEAG 312
KFW + T Y +D I E+ I II EGE D L++ EAG
Sbjct: 200 TTGMEKAAGYTKFWSQDSPTTPCPPYHIDCINPLKVSEATIPRLIITEGEKDVLTLNEAG 259
Query: 313 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 372
+ +SVP+GA S +SK E +++Q I++ D D PG+ L +
Sbjct: 260 YPYAISVPNGAASDLSKSFEAFEP-------------WMEQVRDIVICGDSDLPGRTLVK 306
Query: 373 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRD 432
L G RC P KD ++VL G + E++E A + +
Sbjct: 307 HLTDYFG-ARCLLTTLPGD-----CKDISDVLATYGIEVVCEIIEAARPQHTADIVTVSE 360
Query: 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNIN 492
+ I H + + G + + G L I TGVPNSGK+++++ L C +
Sbjct: 361 RTNGILNVLHGEYDHGYDVGYGPLTDHVFHPTDQGGLIIETGVPNSGKTDFLNDLTCRLM 420
Query: 493 EHAGWKFVLCSMENKVRE-HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT 551
G S E ++ H L++ + K NY T E+ + ++L++
Sbjct: 421 AKTGRYVCYLSFEVPDKDKHIAHLVQLMLGK-MNTVNY-------TQEQLKPIVSFLNSH 472
Query: 552 FSLIRCENDSLPSIKWVLDLAKAAVLRHG--VRGLVIDPYNELDHQRPVSQTETEYVSQM 609
+ S P+ + +A+A ++R ++ L+IDPY ++ + TET+ + M
Sbjct: 473 MVHLDLHEVS-PTPNNI--IARADMVRRTLPLKYLIIDPYLFMEVETNRYNTETQAIKAM 529
Query: 610 LTMVKRFAQHHACHVWFVAHPRQLHNWVG----EPPNLYDISGSAHFINKCDNGIVIHR- 664
LT ++ + + + V VAHPR+L G E ++Y I+GSA++ N D I R
Sbjct: 530 LTQMQAWGRTNNIWVIIVAHPRKLTKLNGKNELEEIDMYTIAGSANWANLADFIFSISRI 589
Query: 665 NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
NR + G R+ + KVR++ + G + L + G Y
Sbjct: 590 NR--QDGNYTRLDML--KVRDQDLCQTG-SVLYVRQACGRY 625
>gi|423224621|ref|ZP_17211089.1| hypothetical protein HMPREF1062_03275 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392635061|gb|EIY28967.1| hypothetical protein HMPREF1062_03275 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 656
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 133/539 (24%), Positives = 225/539 (41%), Gaps = 83/539 (15%)
Query: 176 KCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAET 235
+ G S ++ + + + + FSK I+ +T+D + R Y A++ IS +T
Sbjct: 83 RTGKTTSEVPMIPEDYKKLTPEVFSK---IKPLTDDPETTDRDQLTARRYLADQGISLKT 139
Query: 236 LRRNRVMQKRH-------------GHEVVIAFPYWRNGKLVNCKYRDFN----------- 271
R+ H +A+ + NG+ VN KYR +
Sbjct: 140 AIEARIGCLTHRCFGKDEDSKNTGTMHHCVAYVNYLNGQPVNAKYRSCDPSTVKPTDERE 199
Query: 272 ----------KKFWQEKD--TEKVFYGLDDIE----GESDI---IIVEGEMDKLSMEEAG 312
KFW + T Y +D I E+ I II EGE D L++ EAG
Sbjct: 200 TTGMEKAAGYTKFWSQDSPTTPCPPYHIDCINPLKVSEATIPRLIITEGEKDVLTLNEAG 259
Query: 313 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 372
+ +SVP+GA S +SK E +++Q I++ D D PG+ L +
Sbjct: 260 YPYAISVPNGAASDLSKSFEAFEP-------------WMEQVRDIVICGDSDLPGRTLIK 306
Query: 373 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRD 432
L+ G RC P KD ++VL G + E++E A + +
Sbjct: 307 HLSDYFG-ARCLLTTLPGD-----CKDISDVLATYGIEVVCEIIEAARPQHTADIVTVSE 360
Query: 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNIN 492
+ I H + + G + + G L I TGVPNSGK+++++ L C +
Sbjct: 361 RTNGILNVLHGEYDHGYDVGYGPLTDHVFHPTDQGGLIIETGVPNSGKTDFLNDLTCRLM 420
Query: 493 EHAGWKFVLCSMENKVRE-HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT 551
G S E ++ H L++ + K NY T E+ + ++L++
Sbjct: 421 AKTGRYVCYLSFEVPDKDKHIAHLVQLMLGK-MNTVNY-------TQEQLKPIVSFLNSH 472
Query: 552 FSLIRCENDSLPSIKWVLDLAKAAVLRHG--VRGLVIDPYNELDHQRPVSQTETEYVSQM 609
+ S P+ + +A+A ++R ++ L+IDPY ++ + TET+ + M
Sbjct: 473 MVHLDLHEVS-PTPNNI--IARADMVRRTLPLKYLIIDPYLFMEVETNRYNTETQAIKAM 529
Query: 610 LTMVKRFAQHHACHVWFVAHPRQLHNWVG----EPPNLYDISGSAHFINKCDNGIVIHR 664
LT ++ + + + V VAHPR+L G E ++Y I+GSA++ N D I R
Sbjct: 530 LTQMQAWGRTNNIWVIIVAHPRKLTKLNGKNELEEIDMYTIAGSANWANLADFIFSISR 588
>gi|313111265|ref|ZP_07797083.1| hypothetical protein PA39016_003090035 [Pseudomonas aeruginosa
39016]
gi|310883585|gb|EFQ42179.1| hypothetical protein PA39016_003090035 [Pseudomonas aeruginosa
39016]
Length = 609
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 113/455 (24%), Positives = 189/455 (41%), Gaps = 51/455 (11%)
Query: 224 AYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFN-----KKFWQEK 278
AY R + ET+ ++ + G ++V FPY R+G L+ K + K+
Sbjct: 125 AYLVGRGLKPETIAEFKIGES--GRDIV--FPYLRDGALIFWKKLGVDRPNGKKRISASA 180
Query: 279 DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 337
D E +G I +G ++ I EGE+D ++ + G +SVP G + + E
Sbjct: 181 DAEPCLFGWQAIPDGAREVTITEGEIDAMTAWQYG-RPALSVPFGGGKGEKQAWIEHEYS 239
Query: 338 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 397
L + I LA D D PG+ EE+ +R+GRERC + K+ F
Sbjct: 240 ------------RLSRFDVIYLAMDDDEPGKQATEEIIKRLGRERCRILDLGCKD----F 283
Query: 398 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 457
+A + L Y + + A+ L + D++ A + + G++T W
Sbjct: 284 NEALDALFYT-RDDIDDCYAKAKTLDPEKLVGAESFVDDVCAEFFERNPAVMGMATPWEK 342
Query: 458 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 517
++ E+TI TG GKS+ ++ L + G KF + SME A++ L+
Sbjct: 343 SRDMIRFRDSEVTIWTGWSGHGKSQLLNYLAFH-GMRQGEKFCIASMEMP----AKRTLQ 397
Query: 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 577
+ +++ N + EF G+ W+ N +++ + A
Sbjct: 398 RMVRQA-AGLNQPSRGYIHAILEFLGGRLWIYNQMGSANTAE--------MIETFRYAAR 448
Query: 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM--VKRFAQHHACHVWFVAHPRQLHN 635
R+GV+ V+D +L E +Y Q M + FA HV VAHPR+ +
Sbjct: 449 RYGVKQFVVDSLAKL------GMAEDDYNGQKQAMESIVGFAHEMGVHVHLVAHPRKADD 502
Query: 636 WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA 670
P L D+ G A + DN I + RN+ E+
Sbjct: 503 ESKMPGKL-DVRGGAILTDLADNVITVWRNKKKES 536
>gi|319899348|ref|YP_004159445.1| hypothetical protein BARCL_1203 [Bartonella clarridgeiae 73]
gi|319403316|emb|CBI76875.1| protein of unknown function [Bartonella clarridgeiae 73]
Length = 666
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 118/463 (25%), Positives = 203/463 (43%), Gaps = 57/463 (12%)
Query: 220 NELRAYF-AERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYRDFNKKFWQE 277
++++ Y ER I E L+R ++ ++ G++++ FP+++ +G L K R + +
Sbjct: 120 HQVKTYLHKERHIPLEILQRYQIGEE--GNKII--FPFYKPDGTLALVKER-LAENGAKA 174
Query: 278 KDT----EKVFYGLDDIEG------ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSV 327
K T E + +G + + ++I EGE+D LS+ G+ VSVP G
Sbjct: 175 KPTLSQCEPILFGWQALSSKERASTDRTLVITEGEIDALSLAAYGY-PAVSVPFGG---- 229
Query: 328 SKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 387
+ K ++ N +L+ I LATD D PG+ A E+A R+GR RC+RVR
Sbjct: 230 --------GKGGKQNWIENEFDHLESFETIFLATDMDTPGEEAAFEIAHRLGRHRCYRVR 281
Query: 388 WPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSG 446
P KDAN L + + E A+ + GL + DY +++ ++ +
Sbjct: 282 LPD-------KDANACLQAGVDASIIHEAFLQAQSFTPKGLRHALDYKEQVVNLFYPPAK 334
Query: 447 DEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
G + + LN P ELT+ +G +GKS+ + I + E + L S+E
Sbjct: 335 QHLGYTVPYPKLNGKLYFRPAELTLWSGASGAGKSQLLSDCIPHWIEQKS-RLCLASLEM 393
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 566
K + R+L ++ G ++ T E E+ +L LI E+ ++
Sbjct: 394 KGEQSLRRLTKQ-----------TGGTDQPTKEMIERVLHFLDA--GLILYEHVGKSNVD 440
Query: 567 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 626
+LD+ ++G +ID L +S + Q + + +A +A H+
Sbjct: 441 ALLDVFDYCRAKYGCDQFIIDSLMRLG----ISSDDYAGQEQAVYKIVDWAVLNAVHIHL 496
Query: 627 VAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
VAH R+ + P DI G++ N I I RNR E
Sbjct: 497 VAHARK-SGLEKDVPGTEDIKGASEIGANAFNIITIWRNRSLE 538
>gi|410658448|ref|YP_006910819.1| DNA primase/helicase [Dehalobacter sp. DCA]
gi|410661435|ref|YP_006913806.1| DNA primase/helicase [Dehalobacter sp. CF]
gi|409020803|gb|AFV02834.1| DNA primase/helicase [Dehalobacter sp. DCA]
gi|409023791|gb|AFV05821.1| DNA primase/helicase [Dehalobacter sp. CF]
Length = 607
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 124/479 (25%), Positives = 209/479 (43%), Gaps = 61/479 (12%)
Query: 205 IREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVN 264
+RE+++ +++L A R I+ +TL RV + V F Y+++ L +
Sbjct: 108 MRELSKAAIDL----------MAVRKITKQTLDAWRVKESTWNGVNVYVFQYFQDNTLKH 157
Query: 265 CKYRDFNK---KFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPD 321
YR+ + K EK+TE + +G+ +E ++I EG+ D +++ ++G+ N SVP
Sbjct: 158 VTYREIKQGGLKGGCEKNTEPILWGMWHVEDGKPLVITEGQPDAMAIWQSGYKNVASVPS 217
Query: 322 GAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRE 381
GA S ++ C +LK +IL D D G +A+ ++RR+
Sbjct: 218 GANS---------------LTWIDTCWDWLK-GREVILWADNDKAGINMADNISRRLDN- 260
Query: 382 RCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYY 441
K + KDANEVL GP + E++E+A GL + ++
Sbjct: 261 -------VKVVHAEDLKDANEVLYKYGPEKVLEIIESASKQIPNGLLDL--------SHV 305
Query: 442 HRTSGDEFGISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 500
+E GI TG+ + + + GELTIV G GK+ +I +I + E F+
Sbjct: 306 EYKIANESGIETGFFEYDSHVEDWKEGELTIVFGRNGEGKTTFISQIIAHCLEKKVKTFL 365
Query: 501 LCS--MENKVREHARKLL----EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
E K+++ K + + H+++ +A Y E + E +Q K W L
Sbjct: 366 YSGEMSEFKIQDWLYKQIVGNKQAHMQET--QAKYRIKRE-IKPEIVKQIKQWHEGILYL 422
Query: 555 I-RCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 613
R E + +L A R+GV+ +ID N + + + + +
Sbjct: 423 FDRKEEKIAKDLDKFFELMALAAKRYGVKLFIID--NLMSKLEENADSLYSDQANFVQRC 480
Query: 614 KRFAQHHACHVWFVAHPRQLHNWV-GEPPNL--YDISGSAHFINKCDNGIVIHRNRDPE 669
K FA + HV VAHP + + + NL DISGS + NK DN I + R P+
Sbjct: 481 KDFAGNGRAHVVLVAHPNKEKCEIKKDEGNLTKTDISGSNNIPNKADNIIAVERVWSPD 539
>gi|300918426|ref|ZP_07135024.1| conserved hypothetical protein [Escherichia coli MS 115-1]
gi|300414401|gb|EFJ97711.1| conserved hypothetical protein [Escherichia coli MS 115-1]
Length = 623
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 116/457 (25%), Positives = 194/457 (42%), Gaps = 61/457 (13%)
Query: 225 YFAERLISAETLRRNRVMQK-----RHGHEV-VIAFPYWRNGKLVNCKY----RDFNKKF 274
Y + R I+ ET + RV E+ +AFPY RNG+L+ K R KK
Sbjct: 122 YLSSRGITRETADQFRVSDAVVWYHDENREIPAVAFPYLRNGELLQVKRIGTERPNGKKL 181
Query: 275 -WQEKDTEKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 332
E D E +G ++ ++ +++ EGE+D ++ + G ++ +SVP G
Sbjct: 182 IMAEADCEPCLFGWQAMDAKARAVVLCEGEIDCMTYSQFG-ISALSVPFGGGKG------ 234
Query: 333 PSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKN 392
+++Q +Y+Y L + I L+ D D G+ A+E+ARR+G RC V P K+
Sbjct: 235 -AKQQWIEYEY-----HNLDRFEEIWLSLDNDDVGREAAKEIARRLGEHRCRLVELPHKD 288
Query: 393 DVDHFKDA---NEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE-IDAYYHRTSGDE 448
+ +E+ YLG A+ + L + D E +DA+ HR G
Sbjct: 289 INECLTSGMSEDEIWHYLG---------TAKFFDPDELCSAGDLLQETLDAFEHRDVG-- 337
Query: 449 FGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508
S+ W +LN + GELT+V GV GK+E + + N G + + S+E K
Sbjct: 338 -LFSSPWDSLNSNFKFRAGELTLVNGVNGHGKTELVGHIAVNAMSQ-GVRVCIASLELK- 394
Query: 509 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWV 568
K+L + ++ N + MT E F + W+ + + +
Sbjct: 395 ---PGKMLARLTRQTICRKNPERTEIIMTNEWFSD-RLWVFKLTGTAKADR--------L 442
Query: 569 LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 628
L++ A R+G+ VID + + E++ + F H CHV V
Sbjct: 443 LEIFAYARRRYGIDLFVIDNLAKCGLDEEDYGGQKEFIDTLCD----FKNEHNCHVLLVT 498
Query: 629 HPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665
H R+ + P D+ G+ + DN + + RN
Sbjct: 499 HARKTNE--AAPTGKMDVKGTGALTDMPDNVMAVWRN 533
>gi|422321729|ref|ZP_16402774.1| hypothetical protein HMPREF0005_02002 [Achromobacter xylosoxidans
C54]
gi|317403363|gb|EFV83876.1| hypothetical protein HMPREF0005_02002 [Achromobacter xylosoxidans
C54]
Length = 605
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 121/493 (24%), Positives = 205/493 (41%), Gaps = 46/493 (9%)
Query: 220 NELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYR--DFNKKFWQE 277
+ +R + R ++ ET+ R+ ++ G +V FPY R+G+LVN K R D K Q
Sbjct: 133 SRVREWLMGRGLTEETITAFRIGEQERGAKVYAIFPYLRDGELVNTKSRNPDEKKDMLQA 192
Query: 278 KDTEKVFYGLDDIEGESDII-IVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEE 336
E +G I+ + ++ I EGE+D ++ + G + +SV GA
Sbjct: 193 AGAEPCLFGWHLIDPNARMVAIFEGEIDAMTGHQVG-IPSLSVNAGA------------- 238
Query: 337 QDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDH 396
+Q++ + L+Q S I+L D D G E+A R+G ERC + K
Sbjct: 239 --GNHQWIESDWERLQQFSDIVLCYDNDDAGHKGVREVATRLGLERCRIATFGKA----- 291
Query: 397 FKDANEVLM-YLGPGA-LKEVVENAELYPIMGLFNFRDYFDEIDAYY--HRTSGDEFGIS 452
KDANE L Y G + ++ A L D+ A + + +S
Sbjct: 292 -KDANEYLTEYQASGEDFEHCIKQARGLDPDELQQLADFMPATQAMFWPAHDAPAYPQLS 350
Query: 453 TGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 512
RA++ + LP +++ TG+ GKS + + + + +C ++ A
Sbjct: 351 FCGRAMD-WWEWLPARVSVWTGINGHGKSLMLSQALIPVMQS---DVPVCMFSGELTP-A 405
Query: 513 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLA 572
++L K + K + A V+ + QG+ W+ N + + +L++
Sbjct: 406 QQL--KRLAKQITGIDRPTPAYLSAVQNWLQGRMWIFNVVGIAGLDR--------LLEVF 455
Query: 573 KAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ 632
A R+G VID LD + T + M +V FA HV VAHPR+
Sbjct: 456 AYAASRYGCGHFVIDSLMMLDVPEDGPGSMTAQKTAMRKIVS-FAHATQSHVHLVAHPRK 514
Query: 633 LHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIG 692
+ P L D++GS H N DN + + P D + ++++
Sbjct: 515 ASDETKAPGKL-DVAGSGHITNGADNVFSVWSAQKPPGEDTDTPDARLEVLKDRDDVGRR 573
Query: 693 EAFLSYNRVTGEY 705
+ L +NR TG+Y
Sbjct: 574 KISLYFNRSTGQY 586
>gi|395780749|ref|ZP_10461204.1| hypothetical protein MCW_01291 [Bartonella washoensis 085-0475]
gi|395417404|gb|EJF83742.1| hypothetical protein MCW_01291 [Bartonella washoensis 085-0475]
Length = 641
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 122/472 (25%), Positives = 198/472 (41%), Gaps = 80/472 (16%)
Query: 228 ERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYRDFNKKFWQEKDTE----- 281
ER I E L+R ++ + G++++ FP+++ +G L K R + + K T
Sbjct: 129 ERCIPLEILKRYQI--REEGNKII--FPFYKPDGTLALVKER-LAQAGAKAKPTAAQCEP 183
Query: 282 -----KVFYGLDDIEGESD------------------IIIVEGEMDKLSMEEAGFLNCVS 318
+ Y D +D ++I EGE+D LS+ G+ VS
Sbjct: 184 ILFGWQALYPADHTRAPADHAPALALIKQDFCSKNRTLVITEGEIDALSLAAYGY-PAVS 242
Query: 319 VPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV 378
VP G K+ ++ N +L+ I LATD D PG+ A E+A R+
Sbjct: 243 VPFGGGVG------------GKHNWIENEFDHLEPFETIFLATDMDNPGEEAAHEIASRL 290
Query: 379 GRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEI 437
GR RC+RVR P+ KDAN+ L + +K +A+ + GL DY D++
Sbjct: 291 GRHRCYRVRLPR-------KDANDCLTAGVDTATIKAAFSSAKSFAPKGLRRASDYKDQV 343
Query: 438 DAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICN-INEHAG 496
+ G + + LN P ELT+ +G +GKS+ + I + I++ +
Sbjct: 344 IGLFWPAPEQHLGYTVPYPKLNGKLIFRPAELTLWSGASGAGKSQLLSDCIPHWISQKS- 402
Query: 497 WKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIR 556
+ L S+E K + R+L ++ G E+ T E E+ +L L+
Sbjct: 403 -RLCLASLEMKGEQSLRRLTKQT-----------GGVEQPTREMIERILHFLDE--GLLL 448
Query: 557 CENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR- 615
E+ S+ +LD+ R+G +ID L T +Y Q + K
Sbjct: 449 YEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRL------GITSDDYAGQEQAVYKMV 502
Query: 616 -FAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666
+A +A H+ VAH R+ + P DI G++ N I I RNR
Sbjct: 503 DWAVLNAVHIHLVAHARK-GGLDKDIPGTEDIKGASEIGANAFNIITIWRNR 553
>gi|262040832|ref|ZP_06014059.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041815|gb|EEW42859.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 623
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 116/462 (25%), Positives = 199/462 (43%), Gaps = 59/462 (12%)
Query: 219 GNELRAYFAERLISAETLRRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKY----R 268
N Y A R I+ ET + RV + +A+PY RNG+L+ K R
Sbjct: 116 ANHCYDYLASRGITRETADQFRVSDAVVWYHDENREVAAVAYPYIRNGELLQVKRISTER 175
Query: 269 DFNKKF-WQEKDTEKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSS 326
KK E D E +G ++ ++ +++ EGE+D ++ + G ++ +SVP G
Sbjct: 176 PGGKKLIMAEADCEPSLFGWQAMDAKARAVVLCEGEIDCMTYSQLG-ISALSVPFGGGKG 234
Query: 327 VSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRV 386
+++Q +Y+Y L + I L+ D D G+ A+E+ARR+G RC V
Sbjct: 235 -------AKQQWVEYEY-----HNLDRFDEIWLSLDNDEVGREAAKEIARRLGEHRCRLV 282
Query: 387 RWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDE-IDAYYHRT 444
P +KD NE L+ + + + + A+ + L + D E IDA+ HR
Sbjct: 283 ELP-------YKDINECLIAGVSEDDIWQCLGTAKFFDPDELCSAGDLLQETIDAFEHRD 335
Query: 445 SGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDAL-ICNINEHAGWKFVLCS 503
G ++ W +LN + GELT+V GV GK+E + + I +++ + + S
Sbjct: 336 VG---LFTSPWESLNSNFKFRAGELTLVNGVNGHGKTELVGHIAIAAMSQEV--RTCIAS 390
Query: 504 MENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLP 563
+E K K+L + ++ A S +R EE W S+ + + +
Sbjct: 391 LELK----PGKMLARLTRQTICTA----SPKR---EEIIMTNEWFSDRLWVFKLTGTAKA 439
Query: 564 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623
+L++ A R+G+ VID + + E++ + F H CH
Sbjct: 440 GR--LLEIFAYARRRYGIDLFVIDNLAKCGLDEEDYGGQKEFIDTLCD----FKNEHNCH 493
Query: 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665
V V H R+ + P D+ G+ + DN + + RN
Sbjct: 494 VLLVTHARKTNE--AAPTGKMDVKGTGALTDMPDNVMAVWRN 533
>gi|302832674|ref|XP_002947901.1| hypothetical protein VOLCADRAFT_116604 [Volvox carteri f.
nagariensis]
gi|300266703|gb|EFJ50889.1| hypothetical protein VOLCADRAFT_116604 [Volvox carteri f.
nagariensis]
Length = 1167
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 79/141 (56%), Gaps = 30/141 (21%)
Query: 576 VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN 635
V G+RGL+IDPYNELD +RP +ET+++ ++LT
Sbjct: 650 VCEFGIRGLLIDPYNELDSRRPRDTSETDFIRELLTK---------------------KV 688
Query: 636 WVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAG-----PIDRVQVCVRKVRNK 686
G+ P LYDISGSAH+ NK DNGIV+HR P+ G + V + ++KVRNK
Sbjct: 689 LTGQAPGLYDISGSAHWFNKTDNGIVVHRRFQERTHPDTGKRYRVALPEVDIKLQKVRNK 748
Query: 687 VVGTIGEAFLSYNRVTGEYMD 707
+GT GEA+L Y++ TG Y D
Sbjct: 749 DIGTQGEAYLLYDKATGRYED 769
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 52/84 (61%)
Query: 389 PKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDE 448
P++ KDANEVLM GP L V+E+A+ + GL FR++ EI AY+ R +
Sbjct: 549 PRRGRGGFRKDANEVLMLDGPEQLVAVLESAQPAKVSGLATFREFEMEIAAYFQRQDPLQ 608
Query: 449 FGISTGWRALNELYNVLPGELTIV 472
G+STGWR L+ Y V PGELTIV
Sbjct: 609 LGVSTGWRCLDPFYRVAPGELTIV 632
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 54/105 (51%), Gaps = 18/105 (17%)
Query: 300 EGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ---------------DTKYQYL 344
+GEMDKL++ AGF N VSVP+GAP++ S EQ Y YL
Sbjct: 385 QGEMDKLALNAAGFWNVVSVPNGAPAATSASPSSPPEQLFVRPGERDQLRARVKLHYSYL 444
Query: 345 WNCKMYLKQ---ASRIILATDGDPPGQALAEELARRVGRERCWRV 386
+ M L R LATD DP G AL EL RR+GRERCW V
Sbjct: 445 DSFLMALPADVGRCRFTLATDNDPAGGALRRELLRRLGRERCWEV 489
>gi|395788798|ref|ZP_10468339.1| hypothetical protein ME9_00056 [Bartonella taylorii 8TBB]
gi|395431868|gb|EJF97875.1| hypothetical protein ME9_00056 [Bartonella taylorii 8TBB]
Length = 611
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 124/473 (26%), Positives = 203/473 (42%), Gaps = 68/473 (14%)
Query: 220 NELRAYF-AERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYRDFNKKFWQE 277
N ++ Y ER I E L+R R+ + G +++ FP+++ +G L K R + +
Sbjct: 120 NLVKTYLHKERHIPLEILKRYRIGED--GEKII--FPFYKPDGTLALVKER-LAQAGAKP 174
Query: 278 KDT----EKVFYGLDDI---------------EGESDIIIVEGEMDKLSMEEAGFLNCVS 318
K T E + +G + I+I EGE+D LS+ G+ +S
Sbjct: 175 KPTAAQCEPILFGWQALCPTNHAPTTAQHAFSSTNRTIVITEGEIDALSLAAYGY-PALS 233
Query: 319 VPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV 378
VP G S K+ ++ N +L+ I LATD D PG+ A E+A R+
Sbjct: 234 VPFGGGSG------------GKHNWIENEFDHLEPFETIFLATDMDKPGEEAAREIASRL 281
Query: 379 GRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEI 437
GR RC+RV P+ KDAN+ L + +K +A+ + GL + DY D++
Sbjct: 282 GRHRCYRVHLPR-------KDANDCLTAGIDTDTIKAAFLSAKSFTPEGLRHASDYKDQV 334
Query: 438 DAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICN-INEHAG 496
+ G + + LN P ELT+ +G +GKS+ + I + I++ +
Sbjct: 335 IRLFWPEPEQHLGYTVPYPKLNGKLYFRPAELTLWSGASGAGKSQLLSDCIPHWISQKS- 393
Query: 497 WKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIR 556
+ L S+E K + R+L ++ G E T E E+ +L + LI
Sbjct: 394 -RLCLASLEMKGEQSLRRLTKQT-----------GGLEHPTREMIERILHFLDD--GLIL 439
Query: 557 CENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRF 616
E+ S+ +LD+ R+G +ID L +S + Q + + +
Sbjct: 440 YEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRLG----ISSDDYAGQEQAVYKMVDW 495
Query: 617 AQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
A +A H+ VAH R+ + P DI G++ N I I RNR E
Sbjct: 496 AVLNAVHIHLVAHARK-GGLDKDIPGTEDIKGASEIGANAFNIITIWRNRSLE 547
>gi|319407703|emb|CBI81351.1| hypothetical protein B11C_190057 [Bartonella sp. 1-1C]
Length = 681
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 197/455 (43%), Gaps = 58/455 (12%)
Query: 228 ERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYRDFNKKFWQEKDT----EK 282
ER I E L++ R+ ++ G++++ FP+++ +G L K R K K T E
Sbjct: 131 ERCIPLEILQQYRIGEE--GNKII--FPFYKPDGTLALVKER-LAKNGATAKPTASQCEP 185
Query: 283 VFYGLDDIE------GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEE 336
+ +G + + ++I EGE+D LS+ G+ VSVP G K+N E
Sbjct: 186 ILFGWQALSFKDCDSTDRTLVITEGEIDALSLAAYGY-PAVSVPFGG-GKGGKQNWIENE 243
Query: 337 QDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDH 396
D L+ I LATD D PG+ A E+A R+GR RC+RVR P
Sbjct: 244 FDR-----------LESFETIFLATDMDTPGEEAAFEIAHRLGRHRCYRVRLPS------ 286
Query: 397 FKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW 455
KDAN L + + E A+ + GL + DY +++ ++ + G + +
Sbjct: 287 -KDANACLQAGVDASIIHEAFLQAQSFTPKGLRHVLDYKEQVINLFYPPAKQHLGYTVPY 345
Query: 456 RALNELYNVLPGELTIVTGVPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARK 514
LN P ELT+ +G +GKS+ + I + I + + + L S+E K + R+
Sbjct: 346 PKLNGKLYFRPAELTLWSGASGAGKSQLLSDCIPHWIAQKS--RLCLASLEMKGEQSLRR 403
Query: 515 LLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 574
L ++ G ++ T E E+ +L LI E+ S+ +LD+
Sbjct: 404 LTKQT-----------GGTDQPTKEMIERVLHFLDA--GLILYEHVGKSSVDALLDIFDY 450
Query: 575 AVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH 634
++G +ID L ++ + Q + + +A +A H+ V H R+
Sbjct: 451 CRAKYGCDQFIIDSLMRLG----IASDDYARQEQAVYKIVDWAVLNAVHIHLVTHTRK-S 505
Query: 635 NWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
+ P DI G++ N I I RNR E
Sbjct: 506 GLEKDVPGTEDIKGASEIGANAFNIITIWRNRSLE 540
>gi|423711659|ref|ZP_17685964.1| hypothetical protein MCQ_00528 [Bartonella washoensis Sb944nv]
gi|395413520|gb|EJF79985.1| hypothetical protein MCQ_00528 [Bartonella washoensis Sb944nv]
Length = 648
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 164/375 (43%), Gaps = 46/375 (12%)
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
++I EGE+D LS+ G+ VSVP G K+ ++ N +L+
Sbjct: 228 LVITEGEIDALSLAAYGY-PAVSVPFGGGVG------------GKHNWIENEFDHLEPFE 274
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 414
I LATD D PG+ A E+A R+GR RC+RVR P+ KDAN+ L + +K
Sbjct: 275 TIFLATDMDNPGEEAAHEIASRLGRHRCYRVRLPR-------KDANDCLTAGVDTATIKA 327
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 474
+A+ + GL DY D++ + G + + LN P ELT+ +G
Sbjct: 328 AFSSAKSFAPKGLRRASDYKDQVIGLFWPAPEQHLGYTVPYPKLNGKLIFRPAELTLWSG 387
Query: 475 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
+GKS+ + I + I++ + + L S+E K + R+L ++ G
Sbjct: 388 ASGAGKSQLLSDCIPHWISQKS--RLCLASLEMKGEQSLRRLTKQT-----------GGV 434
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
E+ T E E+ +L L+ E+ S+ +LD+ R+G +ID L
Sbjct: 435 EQPTREMIERILHFLDE--GLLLYEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRL- 491
Query: 594 HQRPVSQTETEYVSQMLTMVKR--FAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAH 651
T +Y Q + K +A +A H+ VAH R+ + P DI G++
Sbjct: 492 -----GITSDDYAGQEQAVYKMVDWAVLNAVHIHLVAHARK-GGLDKDIPGTEDIKGASE 545
Query: 652 FINKCDNGIVIHRNR 666
N I I RNR
Sbjct: 546 IGANAFNIITIWRNR 560
>gi|319404739|emb|CBI78341.1| hypothetical protein BARRO_120115 [Bartonella rochalimae ATCC
BAA-1498]
Length = 679
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 198/455 (43%), Gaps = 58/455 (12%)
Query: 228 ERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYRDFNKKFWQEKDT----EK 282
ER I E L++ R+ ++ G++++ FP+++ +G L K R + K T E
Sbjct: 129 ERCIPLEILQQYRIGEE--GNKII--FPFYKPDGTLALVKER-LAENGATAKPTASQCEP 183
Query: 283 VFYGL------DDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEE 336
+ +G D + ++I EGE+D LS+ G+ VSVP G K+N E
Sbjct: 184 ILFGWQALSFKDCASTDRTLVITEGEIDALSLAAYGY-PAVSVPFGG-GKGGKQNWIENE 241
Query: 337 QDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDH 396
D L+ I LATD D PG+ A E+A R+GR RC+RVR P
Sbjct: 242 FDR-----------LESFETIFLATDMDTPGEEAAFEIAHRLGRHRCYRVRLPG------ 284
Query: 397 FKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW 455
KDAN L + + E A+ + GL + DY +++ ++ ++ G + +
Sbjct: 285 -KDANACLQAGVDASIIHEAFLQAQSFTPKGLRHVLDYKEQVINLFYPSAKQHLGYTVPY 343
Query: 456 RALNELYNVLPGELTIVTGVPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARK 514
LN P ELT+ +G +GKS+ + I + I + + + L S+E K + R+
Sbjct: 344 SKLNGKLYFRPAELTLWSGASGAGKSQLLSDCIPHWIAQKS--RLCLASLEMKGEQSLRR 401
Query: 515 LLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 574
L ++ G ++ T E E+ +L LI E+ S+ +LD+
Sbjct: 402 LTKQT-----------GGTDQPTKEMIERVLHFLDA--GLILYEHVGKSSVDALLDIFDY 448
Query: 575 AVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH 634
++G +ID L ++ + Q + + +A +A H+ V H R+
Sbjct: 449 CRAKYGCDQFIIDSLMRLG----IASDDYARQEQAVYKIVDWAVLNAVHIHLVTHTRK-S 503
Query: 635 NWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
+ P DI G++ N I I RNR E
Sbjct: 504 GLEKDVPGTEDIKGASEIGANAFNIITIWRNRSLE 538
>gi|168006500|ref|XP_001755947.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692877|gb|EDQ79232.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 131
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 76/144 (52%), Gaps = 44/144 (30%)
Query: 504 MENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLP 563
MENKVR+HA KL+EKH +++ L
Sbjct: 1 MENKVRKHAMKLIEKH--------------------------------------KDEELL 22
Query: 564 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623
S+ WVLDLAKA V+RHG+ GLVIDPYN+L + S +S +KRFAQHH C
Sbjct: 23 SVDWVLDLAKADVMRHGICGLVIDPYNKLGIKPRRS------MSVKCLQIKRFAQHHDCQ 76
Query: 624 VWFVAHPRQLHNWVGEPPNLYDIS 647
VWFVAHPRQ+ W GE +LY I+
Sbjct: 77 VWFVAHPRQVQVWSGEARSLYAIN 100
>gi|395781233|ref|ZP_10461656.1| hypothetical protein MCY_00053 [Bartonella rattimassiliensis 15908]
gi|395421610|gb|EJF87850.1| hypothetical protein MCY_00053 [Bartonella rattimassiliensis 15908]
Length = 641
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 165/376 (43%), Gaps = 42/376 (11%)
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
++I EGE+D LS+ G+ VSVP G S +K+ ++ N +L+
Sbjct: 236 LVITEGEIDALSLAAYGY-PAVSVPFGGGSG------------SKHNWIENEFDHLETFE 282
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 414
I LATD D PG+ A E+A R+GR RC+RV P KDAN+ L + ++
Sbjct: 283 TIFLATDMDKPGEEAAHEIASRLGRHRCYRVLLP-------LKDANDCLTAGIDRATIQS 335
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 474
+A+ + GL DY D++ + G + + LN + P ELT+ +G
Sbjct: 336 AFSSAKSFAPEGLRRASDYKDKVMKLFWPEPEQHIGYTVPYPKLNGKLHFRPAELTLWSG 395
Query: 475 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
+GKS+ + I + I + + + L S+E K + R+L ++ G
Sbjct: 396 ASGAGKSQLLSDCIPHWIAQKS--RLCLASLEMKGEQSLRRLTKQT-----------GGL 442
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
E+ T E EQ +L + LI E+ S+ +LD+ R+G +ID L
Sbjct: 443 EQPTREMIEQILHFLDD--GLILYEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRLG 500
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
++ + Q + + +A + H+ VAH R+ + P DI G++
Sbjct: 501 ----IASDDYAKQEQAVYKMVDWAVLNGVHIHLVAHARK-GGLDKDIPGTEDIKGASEIG 555
Query: 654 NKCDNGIVIHRNRDPE 669
N I + RNR E
Sbjct: 556 ANAFNIITVWRNRSLE 571
>gi|395765343|ref|ZP_10445950.1| hypothetical protein MCO_00582, partial [Bartonella sp. DB5-6]
gi|395412373|gb|EJF78881.1| hypothetical protein MCO_00582, partial [Bartonella sp. DB5-6]
Length = 455
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 167/376 (44%), Gaps = 42/376 (11%)
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
I+I EGE+D LS+ G+ +SVP G K+ ++ N +L+
Sbjct: 36 IVITEGEIDALSLAAYGY-PALSVPFGGGVG------------GKHNWIENEFDHLEPFE 82
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 414
I LATD D PG+ A E+A R+GR RC+RVR P+ KDAN+ L + +K
Sbjct: 83 TIFLATDMDKPGEEAACEIASRLGRHRCYRVRLPR-------KDANDCLTAGIDADTIKA 135
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 474
+A+ + GL DY D++ + G + + L+ P ELT+ +G
Sbjct: 136 AFLSAKSFAPEGLRRASDYKDQVIGLFWPEPEQHLGYTVPYPKLHGKLYFRPAELTLWSG 195
Query: 475 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
+GKS+ + I + I++ + + L S+E K + R+L ++ G
Sbjct: 196 ASGAGKSQLLSDCIPHWISQKS--RLCLASLEMKGEQSLRRLTKQ-----------TGGL 242
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
E+ T E E+ +L + LI E+ S+ +LD+ R+G +ID L
Sbjct: 243 EQPTREMIERILHFLDD--GLILYEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRLG 300
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
+S + Q + + +A +A H+ VAH R+ + P+ DI G++
Sbjct: 301 ----ISSDDYTGQEQAVYKMVDWAVLNAVHIHLVAHARK-GGLDKDIPSTEDIKGASEIG 355
Query: 654 NKCDNGIVIHRNRDPE 669
N I I RNR E
Sbjct: 356 ANAFNIITIWRNRSLE 371
>gi|395787910|ref|ZP_10467489.1| hypothetical protein ME7_00824 [Bartonella birtlesii LL-WM9]
gi|395410045|gb|EJF76622.1| hypothetical protein ME7_00824 [Bartonella birtlesii LL-WM9]
Length = 706
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 165/376 (43%), Gaps = 44/376 (11%)
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
I+I EGE+D LS+ G+ +SVP G K+ ++ N +L+
Sbjct: 292 IVITEGEIDALSLATYGY-PALSVPFGGGVG------------GKHNWIENEFDHLEAFE 338
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 414
I LATD D PG+A A E+A R+GR RC+RV P KDANE L + +K
Sbjct: 339 TIFLATDMDKPGEAAAHEIASRLGRHRCYRVHLP-------LKDANECLTAGIDAPTMKA 391
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 474
+A+ + GL DY D++ + G + + L+ + P ELT+ +G
Sbjct: 392 AFSSAKSFAPAGLRRASDYKDKVIGLFWPEPEQHVGYTLPYPKLHGKLHFRPAELTLWSG 451
Query: 475 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
+GKS+ + I + I +++ + L S+E K + R+L ++ G
Sbjct: 452 ASGAGKSQLLSDCIPHWIAQNS--RLCLASLEMKGEQSLRRLTKQ-----------TGGL 498
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
E+ T E EQ +L LI E+ +++ +LD+ R+G +ID L
Sbjct: 499 EQPTKEMIEQILHFLDE--GLILYEHVGKSNVESLLDIFDYCRARYGCDQFIIDSLMRLG 556
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
++ + Q + + +A + H+ VAH R+ + P DI G++
Sbjct: 557 ----IASDDYAGQEQAVYKMVDWAILNNVHIHLVAHARKGGLDI---PGTEDIKGASEIG 609
Query: 654 NKCDNGIVIHRNRDPE 669
N I I RNR E
Sbjct: 610 ANAFNIITIWRNRSLE 625
>gi|163869018|ref|YP_001610249.1| hypothetical protein Btr_2129 [Bartonella tribocorum CIP 105476]
gi|161018696|emb|CAK02254.1| phage-related protein [Bartonella tribocorum CIP 105476]
Length = 1136
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 167/374 (44%), Gaps = 42/374 (11%)
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
I+I EGE+D LS+ G+ VSVP G + K+ ++ N +L+
Sbjct: 740 IVITEGEIDALSLAAYGY-PAVSVPFGG------------GKGGKHNWIENEFDHLEAFE 786
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 414
I LATD D PG+ A E+A R+GR RC+RVR P+ KDAN+ L + +K
Sbjct: 787 TIFLATDMDQPGEEAAHEIASRLGRHRCYRVRLPR-------KDANDCLTAGIDAATIKA 839
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 474
+A+ + GL DY D++ + G + + L + + P ELT+ +G
Sbjct: 840 AFSSAKSFAPEGLRRASDYKDQVIGLFWPEPEKHLGYTVPYPKLKDKLHFRPAELTLWSG 899
Query: 475 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
+GKS+ + I + I +++ + L S+E K + R+L ++ G
Sbjct: 900 ASGAGKSQLLSDCIPHWIAQNS--RLCLASLEMKGEQSLRRLTKQ-----------TGGL 946
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
E+ T E E+ +L N LI E+ S+ +LD+ R+G +ID L
Sbjct: 947 EKPTKETIERILHFLDN--GLILYEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRLG 1004
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
++ + Q + + +A ++ H+ VAH R+ + P DI G++
Sbjct: 1005 ----IASDDYGGQEQAVYKMVDWAVLNSVHIHLVAHARKG-GLDKDIPGTEDIKGASEIG 1059
Query: 654 NKCDNGIVIHRNRD 667
N I I RNR
Sbjct: 1060 ANAFNIITIWRNRS 1073
>gi|241665023|ref|YP_002983383.1| hypothetical protein Rpic12D_3447 [Ralstonia pickettii 12D]
gi|240867050|gb|ACS64711.1| conserved hypothetical protein [Ralstonia pickettii 12D]
Length = 597
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 117/465 (25%), Positives = 195/465 (41%), Gaps = 56/465 (12%)
Query: 215 LEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKY----RDF 270
+ P G L+ ER +S ET+R +V + +V FPY R+ +L+N K+ RD
Sbjct: 114 VSPAGRVLKYLTEERKLSLETIRAFKVAASKEDDAIV--FPYLRDAELINLKHLALERDS 171
Query: 271 N--KKFWQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSV 327
K+ WQ E +G D + + ++IVEGE+D +S+ E G + +SV GA +
Sbjct: 172 KGKKRTWQSAGAEPCLFGWDLVPDSAKAVLIVEGELDAMSLYEYG-IAALSVNQGAGN-- 228
Query: 328 SKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 387
+Q++ + L++ I L D D GQ E+A+R+G +RC V+
Sbjct: 229 -------------HQWIDSDFDRLERFPEIFLWFDNDEAGQKGVREVAQRLGLDRCRIVK 275
Query: 388 WPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSG 446
+ KDANE L + + E ++ AE L Y D++ A +
Sbjct: 276 F-------RLKDANEALQQGVTAEEIGEALDAAERIEPTDLRTPAAYLDDVLAMFRDGPV 328
Query: 447 DEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
+ G + W A ++ + P EL++ TG+ GKS+ + + ++ G + + S E
Sbjct: 329 NTVGGALPWPAWSDKVRLRPAELSVRTGINGHGKSDLLGQVCVDLIRQ-GERVCIFSGEM 387
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 566
K R L + + +A ++ G WL I DSL
Sbjct: 388 KPANVLRHLTIQACATSTPTERFVRAA-----NDWMCGALWLYAHVGTI--SQDSL---- 436
Query: 567 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHV 624
L+ + A R+ V V+D + E +Y +Q L + F HV
Sbjct: 437 --LEAFRYAAKRYRVTHFVVDSLLK------CGIAEDDYKAQKAFLDRLCDFKNEFNAHV 488
Query: 625 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
VAH R+ + + P D+ G+ + DN + RN+ E
Sbjct: 489 HLVAHARKGES-EDKAPGKLDVRGAGAITDLADNVFTVWRNKRKE 532
>gi|395791877|ref|ZP_10471327.1| hypothetical protein MEC_01318 [Bartonella alsatica IBS 382]
gi|395407645|gb|EJF74290.1| hypothetical protein MEC_01318 [Bartonella alsatica IBS 382]
Length = 676
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 166/376 (44%), Gaps = 42/376 (11%)
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
I+I EGE+D LS+ G+ VS+P G K+ ++ N +L+
Sbjct: 256 IVITEGEIDALSLAAYGY-PAVSLPFGGGVG------------GKHNWIENEFDHLESFE 302
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 414
I LATD D PG+ A E+A R+GR RC+RV P+ KDAN+ L + +K
Sbjct: 303 TIFLATDMDKPGEEAAHEIASRLGRHRCYRVYLPR-------KDANDCLTAGIDAETIKA 355
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 474
+A+ + GL DY D++ + G + + LN P ELT+ +G
Sbjct: 356 AFSSAKSFAPEGLRRASDYKDQVIGLFWPEPEQHLGYTVPYPKLNGKLYFRPAELTLWSG 415
Query: 475 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
+GKS+ + I + I++ + + L S+E K + R+L ++ G
Sbjct: 416 ASGAGKSQLLSDCIPHWISQKS--RLCLASLEMKGEQSLRRLTKQT-----------GGL 462
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
E+ T E E+ +L + LI E+ +++ +LD+ R+G +ID L
Sbjct: 463 EQPTKEMIERILHFLDD--GLILYEHVGKSNVETLLDVFDYCRARYGCDQFIIDSLMRLG 520
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
++ + Q + + +A ++ H+ VAH R+ + P DI G++
Sbjct: 521 ----IASDDYAGQEQAVYKMVDWAVLNSVHIHLVAHARK-GGLDKDIPGTEDIKGASEIG 575
Query: 654 NKCDNGIVIHRNRDPE 669
N I I RNR E
Sbjct: 576 ANAFNIITIWRNRSLE 591
>gi|386742315|ref|YP_006215494.1| gp61 [Providencia stuartii MRSN 2154]
gi|384479008|gb|AFH92803.1| gp61 [Providencia stuartii MRSN 2154]
Length = 630
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 106/432 (24%), Positives = 186/432 (43%), Gaps = 60/432 (13%)
Query: 251 VIAFPYWRNGKLVNCKY----RDFNKK-FWQEKDTEKVFYGLDDIEGESDIIIV-EGEMD 304
IAFPY R+G+L+ K R KK E + E +G + + ++I+ EGE+D
Sbjct: 161 AIAFPYKRDGELLQVKRIGIERPNGKKVIMAEANCEPCLFGWQAMPNNARVLILCEGEID 220
Query: 305 KLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGD 364
+S + G L +SVP G ++ + E + L + + I L+ D D
Sbjct: 221 CMSYHQYG-LPALSVPFGGGKGAKQQWIEFEYHN------------LDRFTEIWLSLDND 267
Query: 365 PPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYP 423
GQ A+E+A R+G RC ++ PK KD NE L + L +E A +
Sbjct: 268 EVGQIAAKEIASRLGEHRCRMLKLPK-------KDINECLQAGMTEDELFRYIETAAYFD 320
Query: 424 IMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSE 482
L++ R+++ D +DA+Y + +++ T W LN ++ ELT++ GV GK+E
Sbjct: 321 PEELYSAREFYQDAVDAFYGK---EQYLFRTPWEPLNYNFSFREAELTVINGVNGHGKTE 377
Query: 483 WIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFE--ANYGGSAERMT 537
+ ++ + + S+E K + ++L+ + K P E A++G
Sbjct: 378 VVGHIMLEAMRQQT-RVCVASLELKPGQLLKRLIRQTTCSEKPPIMEIDASFG------- 429
Query: 538 VEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
F + W+ + E +L++ + A R+GV+ VID +
Sbjct: 430 ---FYDDRLWVFGLTGTAKAER--------LLEIFEYAHRRYGVKLFVIDSLMKCGIGEE 478
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657
+ +V + F HV V H R+ + +P D+ G+ + D
Sbjct: 479 DYNGQKAFVDALCD----FKNKTNSHVILVTHSRK-SDSEEKPTGKMDVKGTGAITDLTD 533
Query: 658 NGIVIHRNRDPE 669
N ++I RN+ E
Sbjct: 534 NLMIIWRNKARE 545
>gi|49476113|ref|YP_034154.1| phage-like protein [Bartonella henselae str. Houston-1]
gi|49238921|emb|CAF28216.1| phage related protein [Bartonella henselae str. Houston-1]
Length = 919
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 163/376 (43%), Gaps = 42/376 (11%)
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
++I EGE+D LS+ G+ VSVP G K+N E D +L+
Sbjct: 498 LVITEGEIDALSLAAYGY-PAVSVPFGG-GVGGKQNWIENEFD-----------HLESFE 544
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 414
I LATD D PG+ A E+A R+GR RC+RV+ P KDAN+ L + +K
Sbjct: 545 IIFLATDMDKPGEEAAHEIANRLGRHRCYRVQLP-------CKDANDCLTAGIDAATIKA 597
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 474
+A+ + GL DY D++ + G + + LN P ELT+ +G
Sbjct: 598 AFSSAKSFAPKGLRRASDYKDQVIGLFWPEPKQHLGYTVPYPKLNGKLYFRPAELTLWSG 657
Query: 475 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
+GKS+ + I + I++ + + L S+E K + R+L ++ G
Sbjct: 658 ASGAGKSQLLSDCIPHWISQKS--RLCLASLEMKGAQSLRRLTKQ-----------TGGL 704
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
E T E E+ +L + LI E+ S+ +LD+ R+G +ID L
Sbjct: 705 EHPTREMIERILQFLDD--GLILYEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRLG 762
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
++ + Q + + +A + H+ VAH R+ + P DI G++
Sbjct: 763 ----IASDDYTGQEQAVYKMVDWAILNNVHIHLVAHARK-SGLDKDIPGTEDIKGASEIG 817
Query: 654 NKCDNGIVIHRNRDPE 669
N I I RNR E
Sbjct: 818 ANAFNIITIWRNRSLE 833
>gi|428164842|gb|EKX33854.1| hypothetical protein GUITHDRAFT_98228 [Guillardia theta CCMP2712]
Length = 440
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 117/473 (24%), Positives = 192/473 (40%), Gaps = 73/473 (15%)
Query: 252 IAFPYWR--NGKLVNCKYRDFNKKFWQEKDTEK---VFYGLDDI-EGESDIIIVEGEMDK 305
+ FP++ +LV K R K + D F+G + E ++I++ EGE+D
Sbjct: 3 VTFPWFSPTESELVRVKVRAIEDKKCMKLDPSGNIWGFFGWTTVSEDTTEIVLTEGEIDA 62
Query: 306 LSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDP 365
+++ + L +S+P+GA S +P E L++ I L D D
Sbjct: 63 MTVYQETGLPSLSLPNGASS------LPVE-----------LIAMLERFQTIYLWMDDDV 105
Query: 366 PGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIM 425
PG+ A +++GR RC +V W + KDAN+ L + ++ A++ P
Sbjct: 106 PGREGARMCLKKLGRHRC-KVVWCRDGGNSGPKDANDALQKY---EISTILSKAQIVPHD 161
Query: 426 GLFNFRDYFDEID---AYYHRTSGDEFGISTGWRALNELYNVL----PGELTIVTGVPNS 478
+ F D EI Y+ SG FG AL L +L PGE TIVTG
Sbjct: 162 HILRFEDIRREIQEQLTSYNSISGISFG-----SALPTLTKILKGHRPGEFTIVTGRTGQ 216
Query: 479 GKSEWIDAL---ICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 535
GK+ + L +C H W S E K K+L++H KK + G ++R
Sbjct: 217 GKTTMLSQLSIDLCEQGVHTLWG----SFEIKNARLGAKMLQQHSKK-----SLRGCSDR 267
Query: 536 M---TVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL 592
+ F Q W + + ++ VLD + AV V+ +V+D +
Sbjct: 268 EFNDAADAFSQLPLWFLSYYGTTDIDD--------VLDAMEFAVYSKDVKHVVLDNLQFM 319
Query: 593 DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHF 652
+ + Q + ++ FA H+ V HPR+ + L I G+A
Sbjct: 320 TSGAYRESDTFKILDQAIHKLRLFATDFNVHISLVIHPRKDDE--SQLLTLSSIFGTAKA 377
Query: 653 INKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
+ DN I++ N G I + + +N+ G++G +N T Y
Sbjct: 378 TQESDNVIILQTN-----GAIKYLDI----RKNRFDGSLGCVPFKFNEKTLRY 421
>gi|224143098|ref|XP_002335987.1| predicted protein [Populus trichocarpa]
gi|222837877|gb|EEE76242.1| predicted protein [Populus trichocarpa]
Length = 947
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 114/462 (24%), Positives = 197/462 (42%), Gaps = 63/462 (13%)
Query: 222 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKK--FWQEKD 279
++ + R I+ ET+ RV ++ G + FPY R G+LVN KYR+ +K QE
Sbjct: 468 VKEWLNGRGITDETIAAFRVAEQIRGGKTYAVFPYLRAGELVNVKYRNIAEKRDMRQEGG 527
Query: 280 TEKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQD 338
E +G I+ ++ + I EGE+D +++ + G + +SV GA +
Sbjct: 528 AEPCLFGWHLIDPKARTVAITEGEIDAMTLHQVG-IPALSVNAGAGN------------- 573
Query: 339 TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFK 398
+Q+L N L S I++ D D G+A A+E+ RR+G ERC V P+ K
Sbjct: 574 --HQWLENDWERLDCFSEILIFFDSDEAGKAGAQEIVRRLGLERCKLVTLPE-------K 624
Query: 399 DANEVLMYLGPGALKE----VVENAELYPIMGLFNFRDYFDEIDAYY---HRTSGDEFGI 451
DANE +L GA E + A+ + D+ + + + + H +GD
Sbjct: 625 DANE---FLQKGACGEDFWHATKEAKTLDPEEMRQASDFINRVKSMFYPAHDDAGDPV-- 679
Query: 452 STGWRALNEL--YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 509
R +L + GE+T+ TG GKS + ++ + + V R
Sbjct: 680 ---LRLDKDLDWFEFRSGEVTVWTGYNGHGKSLMLSQVLLGLMQQGDRVMVFSGEMTPER 736
Query: 510 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVL 569
+ L++ +K+ +R ++ + AWL + + I +L
Sbjct: 737 Q-----LKRTVKQ-------AAGLDRPSMPYIDAIGAWLHDKQWFFNVVGSA--GIDRLL 782
Query: 570 DLAKAAVLRHGVRGLVIDP--YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 627
+ R+G+R VID ++ P S T + + + + FA+ + HV V
Sbjct: 783 AVFLYGSKRYGMRHFVIDSLMMTDVPEDGPGSMTAQK---EAVRKICDFARRNGVHVHLV 839
Query: 628 AHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
AHPR+ + + P D++GS+ + DN + R E
Sbjct: 840 AHPRKGAD-ESKGPGKLDVAGSSKITDGADNVFTVWSARKDE 880
>gi|121602385|ref|YP_988524.1| putative DNA primase/helicase [Bartonella bacilliformis KC583]
gi|421760337|ref|ZP_16197156.1| putative DNA primase/helicase [Bartonella bacilliformis INS]
gi|120614562|gb|ABM45163.1| putative DNA primase/helicase [Bartonella bacilliformis KC583]
gi|411176054|gb|EKS46075.1| putative DNA primase/helicase [Bartonella bacilliformis INS]
Length = 788
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 98/389 (25%), Positives = 171/389 (43%), Gaps = 42/389 (10%)
Query: 280 TEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDT 339
+++ F + + D++I EGE+D LS+ G+ +S+P G +
Sbjct: 361 SDRAFPPTQNAKQARDLVITEGEIDALSLAAYGY-PALSLPFGG------------GKGG 407
Query: 340 KYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKD 399
K+ ++ +L+ +I LATD DPPG+ A +A R+GR RC+RV P +KD
Sbjct: 408 KHAWIEQEFDHLEIFEKIYLATDMDPPGEEAALAIANRLGRHRCYRVCLP-------YKD 460
Query: 400 ANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL 458
AN+ L L + + A+ + GL DY +++ + G S + L
Sbjct: 461 ANDCLTAGLDAATIAQAFAKAKSFAPEGLHRASDYKEKVLELFWPNPEQHVGYSVPYPKL 520
Query: 459 NELYNVLPGELTIVTGVPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLE 517
+ P ELT+ +G +GKS+ + I + I + + + L S+E K + R+L++
Sbjct: 521 EGKLSFRPAELTLWSGASGAGKSQLLSDCIPHWIAQES--RLCLASLEMKGEQSLRRLIK 578
Query: 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 577
+ G T E+ EQ +L + LI E+ +++ +LD+
Sbjct: 579 QT-----------GGTSHPTKEKIEQILHFLDH--GLILYEHVGKSNVETLLDVFDYCRA 625
Query: 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV 637
++G +ID L ++ + Q + + +A +A HV VAH R+
Sbjct: 626 KYGCDQFIIDSLMRLG----IAADDYTGQEQAVYKIVDWAVLNAVHVHLVAHARK-SGVD 680
Query: 638 GEPPNLYDISGSAHFINKCDNGIVIHRNR 666
+ P DI G++ N I I RNR
Sbjct: 681 KDIPGTEDIKGASEIGANAFNIITIWRNR 709
>gi|421834245|ref|ZP_16269323.1| TOPRIM domain protein [Clostridium botulinum CFSAN001627]
gi|409744322|gb|EKN42936.1| TOPRIM domain protein [Clostridium botulinum CFSAN001627]
Length = 618
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 141/611 (23%), Positives = 247/611 (40%), Gaps = 100/611 (16%)
Query: 144 CPKCNGG-DSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSS-----LK 197
CP CNGG ++ + S+ +D+ ++ C R KCG G+ L + Q+ LK
Sbjct: 30 CPFCNGGAHHDQYTFSINIDKHTYN----CLRGKCGESGTFKELAEKYGEQAQYYLDWLK 85
Query: 198 KFSK-MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQ---KRHGHEVVIA 253
+ +K K + ++ ++ L +++ YF +R IS +TL + V K+ E +
Sbjct: 86 ENNKEYKQTAQYSQPKYKINSLSDKVVQYFNKRGISKKTLEKVGVKSFYFKKINEEFAV- 144
Query: 254 FPYWRNGKLVNCKYRDFNK-----------KFWQEKDTEKVFYGLDDIEGESDIIIVEGE 302
F ++ N KLV K R K K W+E + V + + +I+ +I+ EG
Sbjct: 145 FQFFENEKLVMNKMRLLRKPQIKKDGKKELKEWKESGGKHVLWNMQNIDKNKPVILCEGM 204
Query: 303 MDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATD 362
+D LS+ E N S+P G ++ NC ++++ I+ D
Sbjct: 205 VDGLSVIECEVENVTSIPSGTRDLT---------------WIDNCYDWIQEIKEWIIYVD 249
Query: 363 GDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422
D G L L + G +C V+ KDAN+ L LG + + ++NA+
Sbjct: 250 NDVAGDELKNNLLMKFGYSKCRVVK-------HELKDANDELNVLGKEYIIDAIKNAKYE 302
Query: 423 PIMGLFNFRDYFDEID-AYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGK 480
+ GL + + D ID + R S+ RA+++ L LT+ TG SGK
Sbjct: 303 DVKGLVDISN-VDIIDLSKLERC-------SSSIRAIDKYCGGLTFPNLTVWTGKRGSGK 354
Query: 481 SEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP---------FFEANYGG 531
S I + FV H + L + P + + +
Sbjct: 355 STVASQCITAAVDQGYNAFVYTG--ELAAGHFKLWLYSQMAGPENIDTVTYRYEQTDMER 412
Query: 532 SAERMTVEEF-EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID--- 587
E + +E +Q W+S L ++++ ++ L + + R+ R +ID
Sbjct: 413 PDEYIPKKEIVQQIDNWISGKLKLY--DDNNTNKEDEIIKLMEESYKRYNTRVFLIDNLM 470
Query: 588 --PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYD 645
+N + R ++Q S + +++FA + +V V HPR+ G+ + D
Sbjct: 471 TVKFNSNSNGRFIAQ------SDFIDRLRQFALQYRVNVNVVVHPRKTQ--AGKEVDSDD 522
Query: 646 ISGSAHFINKCDNGIVIHRNRD----PEAGPIDRVQV-CVRKV---RNKVVGTIGEAFLS 697
+ GS N N I R ++ PI+R V C K+ +N+ +
Sbjct: 523 VGGSGDITNAAFNVYWISRIKNDDDLDFDDPIERQLVGCQSKIDILKNRYYSVV------ 576
Query: 698 YNRVTGEYMDI 708
N+V G DI
Sbjct: 577 -NKVGGMKFDI 586
>gi|317491569|ref|ZP_07950005.1| hypothetical protein HMPREF0864_00768 [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316921116|gb|EFV42439.1| hypothetical protein HMPREF0864_00768 [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 626
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 122/498 (24%), Positives = 206/498 (41%), Gaps = 65/498 (13%)
Query: 188 DNNRSQSSLKKFSKMK--TIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQK- 244
D++ + KKFSK K IR+ + ++ AY R IS ET +V
Sbjct: 95 DHHFAAKQQKKFSKPKPENIRKFLRKT-------DDCFAYLETRGISRETAEAYKVSSAV 147
Query: 245 --RHGHE---VVIAFPYWRNGKLVNCKY----RDFNKK-FWQEKDTEKVFYGLDDIEGES 294
H + IAFPY R+ +L+ K R KK E D E +G +
Sbjct: 148 VWSHDEQRELPAIAFPYKRDDQLLQVKRISTERPNGKKVIMAEGDCEPCLFGWQAMPKNI 207
Query: 295 DIIIV-EGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ 353
I+++ EGE+D +S + G L +SVP G ++ + E + L +
Sbjct: 208 RIVVLCEGEIDCMSYHQYG-LPALSVPFGGGKGAKQQWIEFEYHN------------LDR 254
Query: 354 ASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGAL 412
I ++ DGD GQA A+E+A R+G RC V+ P KD NE L + +
Sbjct: 255 FDEIWISMDGDEVGQAAAKEIASRLGEHRCRLVKLPH-------KDINECLQAGISSDEI 307
Query: 413 KEVVENAELYPIMGLFNFRDYFDE-IDAYYHRTSGDEFGISTGWRALNELYNVLPGELTI 471
++E AE + L++ R+++ E + A+Y + ++ + W LN + ELT+
Sbjct: 308 IGLLEKAEYFDPEELYSAREFYQETVKAFYGK---EQSMFYSPWEPLNHNFAFRESELTL 364
Query: 472 VTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGG 531
V GV GK+E + ++ G + + S+E K +L K + + A
Sbjct: 365 VNGVNGHGKTEVVGHMVLQAMRQ-GVRTCVASLELKP-----AILLKRLTRQATCAKLPP 418
Query: 532 SAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 591
E + +F + WL + + ++++ + A R+G+ VID +
Sbjct: 419 EIEIESAFKFYDDRLWLFGLTGTAKADR--------LIEIFQYARRRYGIELFVIDSLMK 470
Query: 592 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAH 651
+ + + + F CHV V H R+ + +P D+ GS
Sbjct: 471 CG----IGDDDYNGQKAFIDALCDFKNKTNCHVILVTHSRK-GDSEEKPTGKMDVKGSGS 525
Query: 652 FINKCDNGIVIHRNRDPE 669
+ DN +I RN+ E
Sbjct: 526 ITDLTDNLFIIWRNKPRE 543
>gi|395767793|ref|ZP_10448325.1| hypothetical protein MCS_01258 [Bartonella doshiae NCTC 12862]
gi|395413600|gb|EJF80063.1| hypothetical protein MCS_01258 [Bartonella doshiae NCTC 12862]
Length = 649
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 166/378 (43%), Gaps = 46/378 (12%)
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
I+I EGE+D LS+ G+ VS+P G + K+ ++ N +L+
Sbjct: 245 IVITEGEIDALSLAAYGY-PAVSLPFGGGTG------------GKHNWIENEFDHLEIFE 291
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 414
I LATD D PG+ A E+A R+GR RC+RV P+ KDANE L + ++
Sbjct: 292 TIFLATDMDKPGEEAAHEIANRLGRHRCYRVHLPR-------KDANECLTAGVDAASIAA 344
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 474
+A+ + GL +Y D++ + T G + + LN P ELT+ +G
Sbjct: 345 AFSSAKSFAPKGLRRASEYKDQVIGLFWPTPEKHLGYTVPYPKLNGKLYFRPAELTLWSG 404
Query: 475 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
+GKS+ + I + I + + + L S+E K + R+L ++ G
Sbjct: 405 ASGAGKSQLLSDCIPHWIAQKS--RLCLASLEMKGEQSLRRLTKQT-----------GGI 451
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
E+ T + E+ +L N LI E+ S+ +LD+ R+G +ID L
Sbjct: 452 EQPTKDMIERVLYFLDN--GLILYEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRL- 508
Query: 594 HQRPVSQTETEYVSQMLTMVKR--FAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAH 651
T +Y Q + K +A +A H+ VAH R+ + P DI G++
Sbjct: 509 -----GITSDDYAGQEQAVYKMVDWAVLNAVHIHLVAHARK-GGLDKDIPGTEDIKGASE 562
Query: 652 FINKCDNGIVIHRNRDPE 669
N I I RN+ E
Sbjct: 563 IGANAFNIITIWRNKSLE 580
>gi|403530941|ref|YP_006665470.1| phage-like protein [Bartonella quintana RM-11]
gi|403233012|gb|AFR26755.1| phage related protein [Bartonella quintana RM-11]
Length = 850
Score = 95.5 bits (236), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 162/376 (43%), Gaps = 42/376 (11%)
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
I+I EGE+D LS+ G+ VSVP G + K+ ++ N +L+
Sbjct: 430 IVITEGEIDALSLAAYGY-PAVSVPFGG------------GRGGKHNWIENEFDHLESFE 476
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 414
I LATD D PG+ A E+A R+G RC RVR P+ KDAN+ L + +
Sbjct: 477 TIFLATDMDKPGEEAAREIANRLGLHRCHRVRLPR-------KDANDCLTAGVDAATIAA 529
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 474
+A+ + GL +Y D++ + G + + LN P ELT+ +G
Sbjct: 530 AFSSAKSFAPEGLRRASEYKDQVTGLFWPEPEQHVGYTVPYPKLNGKLYFRPAELTLWSG 589
Query: 475 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
+GKS+ + I + I + + + L S+E K + R+L ++ G
Sbjct: 590 ASGAGKSQLLSDCIPHWIAQKS--RLCLASLEMKGEQSLRRLTKQT-----------GGL 636
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
E+ E E+ +L + LI E+ S+ +L++ R+G +ID L
Sbjct: 637 EQPKREMIERILDFLDD--GLILYEHVGKSSVDTLLNVFDYCRARYGCDQFIIDSLMRLG 694
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
++ + Q + + +A +A H+ VAH R+ + P DI G++
Sbjct: 695 ----IASDDYTGQEQAVYKMVDWAVLNAVHIHLVAHARK-GGLDKDVPGTEDIKGASEIG 749
Query: 654 NKCDNGIVIHRNRDPE 669
N I I RNR E
Sbjct: 750 ANAFNIITIWRNRSLE 765
>gi|300724256|ref|YP_003713574.1| hypothetical protein XNC1_3413 [Xenorhabdus nematophila ATCC 19061]
gi|297630791|emb|CBJ91460.1| hypothetical protein XNC1_3413 [Xenorhabdus nematophila ATCC 19061]
Length = 631
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 118/471 (25%), Positives = 190/471 (40%), Gaps = 70/471 (14%)
Query: 220 NELRAYFAERLISAETLRR------NRVMQKRHGHEVVIAFPYWRNGKLVNCK-----YR 268
++ AY A R IS +T N + IAFPY RNG+L+ K
Sbjct: 122 DQCYAYLASRGISRQTAEAFEIEDANVWFPAENRTLPAIAFPYKRNGELLQVKRISTELP 181
Query: 269 DFNKKFWQEKDTEKVFYGLDDIEGESDIIIV-EGEMDKLSMEEAGFLNCVSVPDGAPSSV 327
+ K E E +G I ++I+ EGE+D +S + G L +SVP G
Sbjct: 182 NGKKVIMAESQCEPCLFGWQAIPNHVRLVILCEGEIDCMSYHQYG-LPALSVPFGGGKGA 240
Query: 328 SKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 387
++ + E + L + I ++ D D GQ A+E+A R+G RC VR
Sbjct: 241 KQQWIEFEYHN------------LDRFEEIWISMDNDDVGQEAAKEIANRLGAHRCRLVR 288
Query: 388 WPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYF-DEIDAYYHRTS 445
P KD NE L + + +E A + L + R+++ D IDA+Y
Sbjct: 289 LPH-------KDINECLQAGMTQDDVIRCLETAAFFDPEELCSAREFYQDTIDAFY---- 337
Query: 446 GDEFGI-STGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504
G E + T W+ L+ ++ ELT++ GV GKSE + L+C G + + S
Sbjct: 338 GQEHCLFKTPWKMLDPHFSFRESELTVLNGVNGHGKSEMVGHLLCEAMGQ-GIRACVASF 396
Query: 505 ENKVREHARKLLEKHI---KKPFFEANYGGSAERMTVEEFEQGKAW---LSNTFSLIRCE 558
E K + ++L ++ + P E + +F + W L+ T R
Sbjct: 397 ELKPGQLLKRLTQQVACSERPPVIEID--------AAFQFYDDRLWVFGLTGTAKAAR-- 446
Query: 559 NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQ 618
V+D+ A R+G++ VID + + +V + F
Sbjct: 447 ---------VIDIFNYAQRRYGIQLFVIDSLMKCGIGEDDYNGQKAFVDALCD----FKN 493
Query: 619 HHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
HV V H R+ + P D+ G+ + DN ++I RN+ E
Sbjct: 494 RTRSHVILVTHSRK-GDSEERPTGKMDVKGTGAITDLTDNLMIIWRNKARE 543
>gi|373117031|ref|ZP_09531182.1| hypothetical protein HMPREF0995_02018 [Lachnospiraceae bacterium
7_1_58FAA]
gi|371669107|gb|EHO34211.1| hypothetical protein HMPREF0995_02018 [Lachnospiraceae bacterium
7_1_58FAA]
Length = 568
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 114/448 (25%), Positives = 193/448 (43%), Gaps = 72/448 (16%)
Query: 217 PLGNE--LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW-RNGKLVNCKYRDFNK- 272
P+G++ + YF +R IS TL V Q G+ I + Y+ N L KYR K
Sbjct: 38 PIGDKSKIYGYFKKRCISPSTLDYADVRQDEEGN---IVWNYYDTNDVLTMVKYRPSRKV 94
Query: 273 -----KFWQEK--DTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPS 325
K W +K DT + + ++ + S ++I EGE D LS EAGF N VSVP G+
Sbjct: 95 RKGENKCWCQKGADTCNLLFNMNRVNVNSPLLICEGEPDCLSAIEAGFSNAVSVPLGS-- 152
Query: 326 SVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWR 385
T + ++ +L+Q II+ +D D G + +E+ R+G R
Sbjct: 153 -------------TNFHWIEENWDWLEQFDNIIICSDNDEAGYKMQKEVVYRLGSWRTRV 199
Query: 386 VRWPKKNDVDH-----FKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAY 440
V P+ + D D NE L Y G + +++ NA+ P+ G+ +F
Sbjct: 200 VEVPQIFETDDGRKFPVNDLNEALYYFGKERVLDLILNAKDSPVPGVIDFS-------DI 252
Query: 441 YHRTSGDEFGISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKF 499
GI TG + L+ L + G L I+TG+ +GKS +I+ LI E F
Sbjct: 253 QDIDIDQIDGIRTGIKTLDRYLMKIFLGTLNIITGINGAGKSSFINQLIIQSLEEEKNVF 312
Query: 500 VLC---------SMENKVREHARKLLEKHIKKPFFEANYGGSAE-RMTVEEFEQGKAWLS 549
+ + N V R + EKH + + Y E + +++ F +G+
Sbjct: 313 LFSGELPNFQTKNWLNSVIAGQRYIDEKHSGEAVY---YKVQPEAKRSIDNFYRGR---- 365
Query: 550 NTFSLIRCENDSLPSIKWVL-DLAKAAVLRHGVRGLVIDPYNELDHQ---RPVSQTETEY 605
+ D P+ K L + AV ++GV+ +++D ++ + ++E+
Sbjct: 366 -----LHIYEDGQPNTKTALMTTIEDAVRKYGVKLVILDNLTAINLECSDDNKYNKQSEF 420
Query: 606 VSQMLTMVKRFAQHHACHVWFVAHPRQL 633
V +++ K+F + V HP ++
Sbjct: 421 VMELIAFAKKF----NVAIVLVVHPHKI 444
>gi|224056775|ref|XP_002299017.1| predicted protein [Populus trichocarpa]
gi|222846275|gb|EEE83822.1| predicted protein [Populus trichocarpa]
Length = 68
Score = 94.7 bits (234), Expect = 1e-16, Method: Composition-based stats.
Identities = 48/84 (57%), Positives = 60/84 (71%), Gaps = 16/84 (19%)
Query: 299 VEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRII 358
VEGE+DKLS+EEAGF NCVSVP GAP VS K++PS +++ SRI+
Sbjct: 1 VEGEIDKLSVEEAGFRNCVSVPGGAPQIVSAKDLPS----------------IQKLSRIV 44
Query: 359 LATDGDPPGQALAEELARRVGRER 382
LATDGD G++LAEELARR+G+ER
Sbjct: 45 LATDGDTSGRSLAEELARRLGKER 68
>gi|219125812|ref|XP_002183166.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405441|gb|EEC45384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 646
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 142/600 (23%), Positives = 242/600 (40%), Gaps = 96/600 (16%)
Query: 158 SLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSL---- 213
+ F G W F+A G T A V R S + + R+ E S
Sbjct: 89 AYFCHRCGNGGSWYDFKATLGGFHVTGAGV---RHASVAQARTTEDRFRDFLETSTPVQR 145
Query: 214 ELEPL---GNELRAYFAERLIS-----AET-LRRNRVMQKRHGHEV-------------- 250
++EPL +L+A ++ +L ET LR R +QKR +
Sbjct: 146 DVEPLPLPARKLQACYSTQLFDQGPNEVETYLRETRGLQKRTLRKYGVGRANYNFLDDAN 205
Query: 251 ------VIAFPYWRNGK-----LVNCKYRDFNKKFWQEKDTEKV---FYGLDDIEGE-SD 295
++FP+ K K R KK WQ D +G + E ++
Sbjct: 206 QWVKAECVSFPWIMKTKHQSFLTRRIKVRAVAKKSWQRLDPPGGGWGLFGFHTVPPEATE 265
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
II+ EGE D +++ +A VS+P+G +++P E L+ +
Sbjct: 266 IILTEGEYDAMAVWQATGRPAVSLPNGC------RSLPPE-----------VLPLLENFA 308
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKN---DVDHFKDANEVLMYLGPGAL 412
+IIL D D PGQ AE+ A+++G ER + V+ K++ D KDAN+ L L L
Sbjct: 309 KIILWMDNDGPGQEGAEQFAKKIGLERTYIVKPGKQHVPEDAPLPKDANDAL--LQGLDL 366
Query: 413 KEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP----GE 468
+ +V +A+ P + FRD + H + + +L L N++ GE
Sbjct: 367 EAMVRDAQPVPHERILTFRDLRSSV---LHEIIHPDKYVGVPMTSLPALTNIIKGFRRGE 423
Query: 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN 528
+T++TG SGK+ ++ + ++ E G + S E K KL+++ ++P
Sbjct: 424 MTVLTGPTGSGKTTFLGQMSLDLAEQ-GINMLWGSFEIKNTRLIHKLMQQFSREPL---P 479
Query: 529 YGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDP 588
G A +E L F +D + VLD AV + V +++D
Sbjct: 480 TGEQAVESKLEALADRFERLPFYFMKFHGGSD----VDDVLDAMDYAVYVNDVEHIILDN 535
Query: 589 YN-ELDHQRPVSQTETEYVSQMLTMVK--RFAQHHACHVWFVAHPRQLHNWVGEPPNLYD 645
+ + + T ++ Q + + K +FA HV V HPR+ + ++
Sbjct: 536 MQFMISRNKNKTSTFDKFDVQDVAIEKFRKFATDKNVHVTLVVHPRKEQEDMKL--SMAS 593
Query: 646 ISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
I GSA + D +++ D + + +N+ G +G L ++R+TG Y
Sbjct: 594 IYGSAKATQEADTVLILQ---------TDGRRKYIEVKKNRFNGNLGHTPLHFDRLTGRY 644
>gi|254501077|ref|ZP_05113228.1| Toprim domain protein [Labrenzia alexandrii DFL-11]
gi|222437148|gb|EEE43827.1| Toprim domain protein [Labrenzia alexandrii DFL-11]
Length = 494
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 122/489 (24%), Positives = 211/489 (43%), Gaps = 74/489 (15%)
Query: 245 RHGHEVVIAFPYW-RNGKLVNCKYRDFNKKFWQEKDTEK--VFYGLDDIEGESDIIIVEG 301
+ G + +A PY NG+ V K R +KKF+ D K +F +G +++ EG
Sbjct: 41 KTGDTIQVA-PYKDANGRTVAQKVRGKSKKFYTLGDFSKAGLFGQHLARKGGKRLVVTEG 99
Query: 302 EMDKLSMEEA-GFLNCVSVPDGAPSSVS--KKNVPSEEQDTKYQYLWNCKMYLKQASRII 358
E+D +S+ +A VS+P+GA S+ + K+N+ +L+ +I+
Sbjct: 100 EIDAMSVHQALKTWPAVSIPNGAQSAAAAVKENLE----------------FLESYEKIV 143
Query: 359 LATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE- 417
DGD PGQ A+E AR + + P KDANE+L G +E+V+
Sbjct: 144 FMFDGDEPGQKAAQECARVLSPGKACIATLP-------LKDANEMLK---EGRTQELVQA 193
Query: 418 --NAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTG 474
A Y G+ + +D +++ E GIS W ++N + Y GELT T
Sbjct: 194 FWEASEYRPDGIVSGKDVWEQA------VKQTEQGISYPWPSMNGITYGQRKGELTTWTA 247
Query: 475 VPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE 534
GKS ++ + ++ + G+K +E V A+ L+ H+ KP S E
Sbjct: 248 GSGMGKSAFVREIEYDLLKQ-GYKVASIRLEENVGRTAKGLMGIHLNKPIHLPGQEVSEE 306
Query: 535 RMTVEEFEQ----GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 590
M + FE G+ WL + F + E+D+L S +R+ +GL +D +
Sbjct: 307 DMRI-AFEATVGCGRFWLLDHFGSL--EDDNLMS-----------KMRYLAKGLGVD-FI 351
Query: 591 ELDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV---GEPP 641
LDH V E + ++T ++ + + ++H ++ G
Sbjct: 352 ILDHISIVVSGMDTGSDERRVIDNLMTQLRSLVEESGVGMHLISHLKRADKKGHEDGAQI 411
Query: 642 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIG-EAFLSYNR 700
+L + GS D I + RN+ ++ R VR ++N+ G G A++ Y++
Sbjct: 412 SLSQLRGSGAIAQLSDMVIGLERNQQAKSEDA-RNLTKVRVLKNRFSGETGIAAYVRYDK 470
Query: 701 VTGEYMDIV 709
TG ++
Sbjct: 471 DTGRLNEVA 479
>gi|224015275|ref|XP_002297295.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968040|gb|EED86397.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 729
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 120/483 (24%), Positives = 202/483 (41%), Gaps = 68/483 (14%)
Query: 250 VVIAFPYWRNGKLV--NCKYRDFNKKFWQEKDTEKVFYGLDD----IEGESDIIIVEGEM 303
+ + FP +G + K R KK WQ D +GL ++III EGE
Sbjct: 245 MCVTFPCSTHGPYIPRRIKVRSIEKKAWQRLDPPGGGFGLFGWHTVPHNATEIIITEGEF 304
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +++ +A VS+P+G +++P E + L+ + L D
Sbjct: 305 DAMAVYQATGRPAVSLPNGC------RSLPME-----------VLLLLENFDTVYLWMDN 347
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDV--DHFKDANEVLMYLGPGALKEVVENAEL 421
D PG+ AE AR++G ERC V+ K + KDANE L L + E++E A
Sbjct: 348 DGPGREGAEMFARKLGVERCLLVQPSGKRGAPPEPPKDANEAL--LTGWDINELLEEASE 405
Query: 422 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP----GELTIVTGVPN 477
P + F D D++ H E T +L +++ GELT++TG
Sbjct: 406 LPHERILKFSDLRDQV---IHEIINPEKYRGTPIPSLPGFTSLIKGFRRGELTVLTGPTG 462
Query: 478 SGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMT 537
SGK+ ++ ++ E G + S E K KLL++++K G + + ++
Sbjct: 463 SGKTTFLGQTSLDLVEQ-GINVLWGSFEIKNTRLMHKLLQQYMKDVL---PVGLAEKDLS 518
Query: 538 VEEFEQGKAWLSNTFSLIRCENDSLP----------SIKWVLDLAKAAVLRHGVRGLVID 587
VEE + L++ + + +SLP + VLD + A H V +++D
Sbjct: 519 VEERQNAMTALTS----LADKFESLPMYFMKFHGGSDVDDVLDAMEYAAYVHDVEHIILD 574
Query: 588 PYNELDHQRPVSQTETEY-----VSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN 642
+ ++ V + + + ++FA + HV V HPR+ G
Sbjct: 575 NMQFMISRQSVEGKGSSFDKFDMQDIAIEKFRKFATEYNVHVTLVVHPRKEDE--GAKLG 632
Query: 643 LYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVT 702
+ GSA + D +++ + R V V+K N+ GTIG + L + R +
Sbjct: 633 MSSFYGSAKATQEADTVLILQSDG-------KRKFVDVKK--NRFDGTIGHSPLYFQRKS 683
Query: 703 GEY 705
G Y
Sbjct: 684 GRY 686
>gi|254505329|ref|ZP_05117477.1| Toprim domain protein [Labrenzia alexandrii DFL-11]
gi|222436173|gb|EEE42855.1| Toprim domain protein [Labrenzia alexandrii DFL-11]
Length = 539
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 118/474 (24%), Positives = 204/474 (43%), Gaps = 72/474 (15%)
Query: 259 NGKLVNCKYRDFNKKFWQEKDTEK--VFYGLDDIEGESDIIIVEGEMDKLSMEEA-GFLN 315
NG+ V K R +KKF+ D K +F +G +++ EGE+D +S+ +A
Sbjct: 100 NGRTVAQKVRGKSKKFYTLGDFSKAGLFGQHLARKGGKRLVVTEGEIDAMSVHQALKTWP 159
Query: 316 CVSVPDGAPSSVS--KKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEE 373
VS+P+GA S+ + K+N+ +L+ +I+ DGD PGQ A+E
Sbjct: 160 AVSIPNGAQSAAAAVKENLE----------------FLESYEKIVFMFDGDEPGQKAAQE 203
Query: 374 LARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE---NAELYPIMGLFNF 430
AR + + P KDANE+L G +E+V+ A Y G+ +
Sbjct: 204 CARVLSPGKACIATLP-------LKDANEMLK---EGRTQELVQAFWEASEYRPDGIVSG 253
Query: 431 RDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSEWIDALIC 489
+D +++ E GIS W ++N + Y GELT T GKS ++ +
Sbjct: 254 KDVWEQA------VKQTEQGISYPWPSMNGITYGQRKGELTTWTAGSGMGKSAFVREIEY 307
Query: 490 NINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ----GK 545
++ + G+K +E V A+ L+ H+ KP S E M + FE G+
Sbjct: 308 DLLKQ-GYKVASIRLEENVGRTAKGLMGIHLNKPIHLPGQEVSEEDMRI-AFEATVGCGR 365
Query: 546 AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV------S 599
WL + F + E+D+L S +R+ +GL +D + LDH V
Sbjct: 366 FWLLDHFGSL--EDDNLMS-----------KMRYLAKGLGVD-FIILDHISIVVSGMDTG 411
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV---GEPPNLYDISGSAHFINKC 656
E + ++T ++ + + ++H ++ G +L + GS
Sbjct: 412 SDERRVIDNLMTQLRSLVEESGVGMHLISHLKRADKKGHEDGAQISLSQLRGSGAIAQLS 471
Query: 657 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIG-EAFLSYNRVTGEYMDIV 709
D I + RN+ ++ R VR ++N+ G G A++ Y++ TG ++
Sbjct: 472 DMVIGLERNQQAKSEDA-RNLTKVRVLKNRFSGETGIAAYVRYDKDTGRLNEVA 524
>gi|225574757|ref|ZP_03783367.1| hypothetical protein RUMHYD_02834 [Blautia hydrogenotrophica DSM
10507]
gi|225038028|gb|EEG48274.1| hypothetical protein RUMHYD_02834 [Blautia hydrogenotrophica DSM
10507]
Length = 606
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 140/589 (23%), Positives = 255/589 (43%), Gaps = 86/589 (14%)
Query: 134 CAPGVENRM-LCPKCNGGDS--EELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALV-DN 189
C G E R CP C GG + ++ + S+ LD F C RA C G+ L D
Sbjct: 23 CVKGDELRFDRCPYCLGGSNGKDKGTFSINLDTGQFK----CLRASCDAHGNMITLARDF 78
Query: 190 NRSQSSL--KKFSKMKTIREI-TEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRH 246
N S + + +S K R I ++ + +P + Y R IS ET +R + ++
Sbjct: 79 NFSLGTEVDEYYSPKKRFRNIHRKEKPQTKPAAVK---YLESRGISEETAKRYNITTQKD 135
Query: 247 GHEVVIAFPYW-RNGKLVNCKYR--DFNK-----KFWQEKDTEKVFYGLDDIEGES-DII 297
+E ++ FP++ N L KYR DF+K K W E++ + + +G++ + E ++
Sbjct: 136 -NENILVFPFYDENNILQFVKYRKTDFDKDRDKNKEWCERNCKPILFGMNHCDPEQPTLV 194
Query: 298 IVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRI 357
+ EG++D LS EAG N VSVP+GA T Y W+ +L + + +
Sbjct: 195 LTEGQIDSLSCAEAGIKNAVSVPNGAKGF------------TWIPYCWD---FLSRFANL 239
Query: 358 ILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE 417
++ D + +L E+ +R V+ +++D KDANE+L GP L++ VE
Sbjct: 240 VIFGDFEHEAISLLPEMQKRFH----GTVKHIREDDYKDCKDANEILQKYGPEYLQKCVE 295
Query: 418 NA------ELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY-NVLPGELT 470
NA ++ P+ + +++A I +G L++L G++
Sbjct: 296 NAVPVSNPKIKPLEEVKRM-----DLNAMEK--------IRSGIYGLDKLTGGFYFGQVI 342
Query: 471 IVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP----FFE 526
+VTG GKS + AG+ S E + + + +E I
Sbjct: 343 LVTGERGFGKSTLVSQFGTQAIA-AGYPTFFYSGE-LMDWYFKAWIEYQIAGARNINALI 400
Query: 527 ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA---AVLRHGVRG 583
++YG + + ++ +Q + W + + +N + L + A+ ++G R
Sbjct: 401 SDYGYKSYSIQADKLQQIENWYAGKAYIY--DNGIVTEDTEEETLLETLENAIKQYGCRV 458
Query: 584 LVIDPYNEL---DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP 640
LVID D + + +T++V + + KR+ V+ + HPR+ G
Sbjct: 459 LVIDNLMTAISDDLSSDLYRMQTKFVKALTVLAKRY----DVLVFLIVHPRKS---TGVA 511
Query: 641 PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVG 689
+ D++GS++ N D +VI + + D + + +N++ G
Sbjct: 512 FDNDDVAGSSNITNLVD--VVIRYGKPKDNDKKDSTERILSVYKNRLNG 558
>gi|49474650|ref|YP_032692.1| phage related protein [Bartonella quintana str. Toulouse]
gi|49240154|emb|CAF26610.1| phage related protein [Bartonella quintana str. Toulouse]
Length = 786
Score = 92.8 bits (229), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 161/376 (42%), Gaps = 42/376 (11%)
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
I+I EGE+D LS+ G+ VSVP G S K+ ++ N +L+
Sbjct: 366 IVITEGEIDALSLAAYGY-PAVSVPFGGGSG------------GKHNWIENEFDHLESFE 412
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 414
I LATD D PG+ A +A R+G RC RVR P+ KDAN+ L + +
Sbjct: 413 TIFLATDMDKPGEEAARAIANRLGLHRCHRVRLPR-------KDANDCLTAGVDAATIAA 465
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 474
+A+ + GL +Y D++ + G + + LN P ELT+ +G
Sbjct: 466 AFSSAKSFAPEGLRRASEYKDQVIGLFWPEPEQHVGYTVPYPKLNGKLYFRPAELTLWSG 525
Query: 475 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
+GKS+ + I + I + + + L S+E K + R+L ++ G
Sbjct: 526 ASGAGKSQLLSDCIPHWIAQKS--RLCLASLEMKGEQSLRRLTKQT-----------GGL 572
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
E+ E E+ +L + LI E+ S+ +L++ R+G +ID L
Sbjct: 573 EQPKREMIERILDFLDD--GLILYEHVGKSSVDTLLNVFDYCRARYGCDQFIIDSLMRLG 630
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
++ + Q + + +A +A H+ VAH R+ + P DI G++
Sbjct: 631 ----IASDDYTGQEQAVYKMVDWAVLNAVHIHLVAHARK-GGLDKDVPGTEDIKGASEIG 685
Query: 654 NKCDNGIVIHRNRDPE 669
N I I RNR E
Sbjct: 686 ANAFNIITIWRNRSLE 701
>gi|347736360|ref|ZP_08869021.1| replication protein / DNA helicase [Azospirillum amazonense Y2]
gi|346920183|gb|EGY01393.1| replication protein / DNA helicase [Azospirillum amazonense Y2]
Length = 613
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 112/452 (24%), Positives = 184/452 (40%), Gaps = 54/452 (11%)
Query: 228 ERLISAETLRRNRVMQKRHGHEVVI--AFPYWRNGKLVNCKYRDFN------KKFWQEKD 279
ERLISA+ +R R+ ++ G +V+ P +G L KY + K E
Sbjct: 129 ERLISADAIRAFRIGEQ--GRTIVLPSVLP---DGALAGVKYLGVDRSTEGRKVIRVEGG 183
Query: 280 TEKVFYGLDDIEGES--DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 337
E V +G + + + I EGE+D ++ + G +SVP G +
Sbjct: 184 CEPVLFGWQAVSNANLRECTITEGEIDAMTAWDYGLPTPLSVPFGGG------------K 231
Query: 338 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 397
K Q+L L Q I LA D D G A A E+ARR+G RC RV P K D++
Sbjct: 232 GAKQQWLEAEYDRLAQFEVIYLALDCDSEGDAAAAEIARRLGEHRCRRVLLPHK-DLNAC 290
Query: 398 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 457
+ AN + ++ ++A L D++ + TS G WR
Sbjct: 291 RQAN-----VSAEDIRRHFDSARTADPEELIRAGALADDVVDLFWPTSESRQGYRLPWRK 345
Query: 458 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 517
+ PGELTI TG GKS+ + + ++ G + + S+E LL+
Sbjct: 346 AGDKLRFRPGELTIWTGGTGEGKSQVLSHAVVDMASQ-GARACIASLEMA----PAMLLK 400
Query: 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 577
+ +K+ G+ +R T + WL L + + ++++ + A
Sbjct: 401 RAVKQ-------AGNNDRPTEARIREVMMWLDTWLLLFGQVGKA--GVTRLIEVFEYARR 451
Query: 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ---LH 634
R+G V+D L + + V +++T +A HV VAH R+ +
Sbjct: 452 RYGCDVFVVDSLMRLGVGSEDYEGQERAVFELVT----WAVAKGVHVHLVAHARKSDRSN 507
Query: 635 NWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666
G+ P D+ G++ + N I + RNR
Sbjct: 508 GQAGQVPGSEDVKGTSEIASNAANIIGVWRNR 539
>gi|440794402|gb|ELR15563.1| mitochondrial helicase twinkle, putative [Acanthamoeba castellanii
str. Neff]
Length = 766
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 117/505 (23%), Positives = 214/505 (42%), Gaps = 67/505 (13%)
Query: 228 ERLISAETLRRNRVMQKRHG----HEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKV 283
+R +S E +R+ +V ++ E + FP+ R + + K +++
Sbjct: 262 QRHLSEEVIRKYKVGATKYAFGGDSEQCVTFPWIDADAEGRNSIRRLKIRSIKNKANQRL 321
Query: 284 --------FYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPS 334
F+G + ++ +I+I EGE D +++ +A L +S+P+GA S+ + +P
Sbjct: 322 TPAGGQWGFFGWHTVPADAKEIVITEGEFDAMAVYQATGLPAISLPNGA-HSLPVELLPR 380
Query: 335 EEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV 394
E+ K YLW D D PGQ A + A+++G +RC VR K+ D
Sbjct: 381 LERFEKI-YLW---------------MDDDIPGQEGAAKFAQKLGIKRCLLVR-TKQGDP 423
Query: 395 DHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-GIST 453
+ KDAN+ L L +++ A P + +F+D DE+ Y + S DE G+ +
Sbjct: 424 EGPKDANDALR--AGKDLNAILKKAGRTPHQQVISFQDIADEV--YRNICSPDELAGVPS 479
Query: 454 GWRALNELYNVL----PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 509
+ L +L GELT+ TG GK+ + L + G + + + E K
Sbjct: 480 --KMFPSLTKILKGHRKGELTVFTGPTGVGKTTLLSQLSLDFAMQ-GVRTLWGNFEIKNT 536
Query: 510 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVL 569
A+K+L ++ K E +R + E +A+ +R + S+ VL
Sbjct: 537 YLAQKMLLQYAGKNLAELQ-----DRAQWD--EASRAFSDLPLYWMRFHGST--SVDQVL 587
Query: 570 DLAKAAVLRHGVRGLVIDPYNEL------DHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623
D AV H V +V+D + + + + + + L +RFA H
Sbjct: 588 DAMDYAVYVHDVEHVVLDNLQFMLSGQAWGQEGVAAGNKFDIQDRALEEFRRFASTKNVH 647
Query: 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 683
+ V HPR+ + P N+ + GS + DN +++ N+ + +
Sbjct: 648 ITLVIHPRKTED--DRPLNVASVFGSVKATQEADNVLILQYNKGED-------WKWLEVA 698
Query: 684 RNKVVGTIGEAFLSYNRVTGEYMDI 708
+N+ G +G L +N+ Y ++
Sbjct: 699 KNRFDGELGPIALQFNKRNKSYREM 723
>gi|70672402|gb|AAZ06404.1| mitochondrial helicase twinkle [Acanthamoeba castellanii]
Length = 765
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 117/505 (23%), Positives = 214/505 (42%), Gaps = 67/505 (13%)
Query: 228 ERLISAETLRRNRVMQKRHG----HEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKV 283
+R +S E +R+ +V ++ E + FP+ R + + K +++
Sbjct: 262 QRHLSEEVIRKYKVGATKYAFGGDSEQCVTFPWIDADAEGRNSIRRLKIRSIKNKANQRL 321
Query: 284 --------FYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPS 334
F+G + ++ +I+I EGE D +++ +A L +S+P+GA S+ + +P
Sbjct: 322 TPAGGQWGFFGWHTVPADAKEIVITEGEFDAMAVYQATGLPAISLPNGA-HSLPVELLPR 380
Query: 335 EEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV 394
E+ K YLW D D PGQ A + A+++G +RC VR K+ D
Sbjct: 381 LERFEKI-YLW---------------MDDDIPGQEGAAKFAQKLGIKRCLLVR-TKQGDP 423
Query: 395 DHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-GIST 453
+ KDAN+ L L +++ A P + +F+D DE+ Y + S DE G+ +
Sbjct: 424 EGPKDANDALR--AGKDLNAILKKAGRTPHQQVISFQDIADEV--YRNICSPDELAGVPS 479
Query: 454 GWRALNELYNVL----PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 509
+ L +L GELT+ TG GK+ + L + G + + + E K
Sbjct: 480 --KMFPSLTKILKGHRKGELTVFTGPTGVGKTTLLSQLSLDFAMQ-GVRTLWGNFEIKNT 536
Query: 510 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVL 569
A+K+L ++ K E +R + E +A+ +R + S+ VL
Sbjct: 537 YLAQKMLLQYAGKNLAELQ-----DRAQWD--EASRAFSDLPLYWMRFHGST--SVDQVL 587
Query: 570 DLAKAAVLRHGVRGLVIDPYNEL------DHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623
D AV H V +V+D + + + + + + L +RFA H
Sbjct: 588 DAMDYAVYVHDVEHVVLDNLQFMLSGQAWGQEGVAAGNKFDIQDRALEEFRRFASTKNVH 647
Query: 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 683
+ V HPR+ + P N+ + GS + DN +++ N+ + +
Sbjct: 648 ITLVIHPRKTED--DRPLNVASVFGSVKATQEADNVLILQYNKGED-------WKWLEVA 698
Query: 684 RNKVVGTIGEAFLSYNRVTGEYMDI 708
+N+ G +G L +N+ Y ++
Sbjct: 699 KNRFDGELGPIALQFNKRNKSYREM 723
>gi|221328670|ref|YP_002533512.1| DNA replication protein [Salmonella phage epsilon34]
gi|193244738|gb|ACF16677.1| DNA replication protein [Salmonella phage epsilon34]
Length = 626
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 116/497 (23%), Positives = 201/497 (40%), Gaps = 66/497 (13%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K +R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIVRYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G + +SVP G ++ + E + L + I ++ DG
Sbjct: 216 DCMSYAQYG-IPALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDG 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLPH-------KDINECLMNGVAEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W L + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWETLAYNFQFREAELTLVNGVNGHGKT 372
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 541
E + + G K + S+E K +L K + + E + +F
Sbjct: 373 EVVGHMALEAMRQ-GIKTCVASLELKP-----GILLKRLTRQSTCCKMPPVLEIESAFKF 426
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
+ WL + E ++++ A R+G++ +ID +
Sbjct: 427 YDDRLWLFGLTGTAKAER--------LIEIFTYARRRYGIQLFIIDSLMKCGIGDDDYNG 478
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 661
+ +V + F H+ V H R+ + +P D+ GS + DN +
Sbjct: 479 QKAFVDALCD----FKNKTNSHIILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDNLFI 533
Query: 662 IHRNRDPEAGPIDRVQV 678
I RN+ E + RVQ
Sbjct: 534 IWRNKARERA-LQRVQA 549
>gi|255252730|ref|YP_003090265.1| DNA primase [Salmonella phage c341]
gi|223697703|gb|ACN18327.1| DNA primase [Salmonella phage g341c]
Length = 626
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 116/497 (23%), Positives = 201/497 (40%), Gaps = 66/497 (13%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K +R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIVRYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G + +SVP G ++ + E + L + I ++ DG
Sbjct: 216 DCMSYAQYG-IPALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDG 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLPH-------KDINECLMNGVAEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W L + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWETLAYNFQFREAELTLVNGVNGHGKT 372
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 541
E + + G K + S+E K +L K + + E + +F
Sbjct: 373 EVVGHMALEAMRQ-GIKTCVASLELKP-----GILLKRLTRQSTCCKMPPVLEIESAFKF 426
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
+ WL + E ++++ A R+G++ +ID +
Sbjct: 427 YDDRLWLFGLTGTAKAER--------LIEIFTYARRRYGIQLFIIDSLMKCGIGDDDYNG 478
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 661
+ +V + F H+ V H R+ + +P D+ GS + DN +
Sbjct: 479 QKAFVDALCD----FKNKTNSHIILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDNLFI 533
Query: 662 IHRNRDPEAGPIDRVQV 678
I RN+ E + RVQ
Sbjct: 534 IWRNKARERA-LQRVQA 549
>gi|224005435|ref|XP_002291678.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972197|gb|EED90529.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 610
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 117/465 (25%), Positives = 195/465 (41%), Gaps = 66/465 (14%)
Query: 266 KYRDFNKKFWQEKDTEKVFYGLDD----IEGESDIIIVEGEMDKLSMEEAGFLNCVSVPD 321
K R KK WQ D +GL ++III EGE D +++ +A VS+P+
Sbjct: 166 KVRSIEKKAWQRLDPPGGGFGLFGWHTVPHDATEIIITEGEFDAMAVYQATGRPAVSLPN 225
Query: 322 GAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRE 381
G +++P E + L+ + L D D PG+ AE AR++G E
Sbjct: 226 GC------RSLPME-----------VLLLLENFDTVYLWMDNDGPGREGAEMFARKLGVE 268
Query: 382 RCWRVRWPKKNDV--DHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDA 439
RC V+ K + KDANE L L + E++E A P + F D D++
Sbjct: 269 RCLLVQPSGKRGAPPEPPKDANEAL--LTGWDINELLEEASELPHERILKFSDLRDQV-- 324
Query: 440 YYHRTSGDEFGISTGWRALNELYNVLP----GELTIVTGVPNSGKSEWIDALICNINEHA 495
H E T +L +++ GELT++TG SGK+ ++ ++ E
Sbjct: 325 -IHEIINPEKYRGTPIPSLPGFTSLIKGFRRGELTVLTGPTGSGKTTFLGQTSLDLVEQ- 382
Query: 496 GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLI 555
G + S E K KLL++++K G + + ++VEE + L++ +
Sbjct: 383 GINVLWGSFEIKNTRLMHKLLQQYMKDVL---PVGLAEKDLSVEERQNAMTALTS----L 435
Query: 556 RCENDSLP----------SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 605
+ +SLP + VLD + A H V +++D + ++ V + +
Sbjct: 436 ADKFESLPMYFMKFHGGSDVDDVLDAMEYAAYVHDVEHIILDNMQFMISRQSVEGKGSSF 495
Query: 606 -----VSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGI 660
+ ++FA + HV V HPR+ G + GSA + D +
Sbjct: 496 DKFDMQDIAIEKFRKFATEYNVHVTLVVHPRKEDE--GAKLGMSSFYGSAKATQEADTVL 553
Query: 661 VIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
++ + R V V+K N+ GTIG + L + R +G Y
Sbjct: 554 ILQSDG-------KRKFVDVKK--NRFDGTIGHSPLYFQRKSGRY 589
>gi|381167564|ref|ZP_09876771.1| Phage related helicase [Phaeospirillum molischianum DSM 120]
gi|380683318|emb|CCG41583.1| Phage related helicase [Phaeospirillum molischianum DSM 120]
Length = 611
Score = 90.1 bits (222), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 114/462 (24%), Positives = 197/462 (42%), Gaps = 56/462 (12%)
Query: 220 NELRAYF-AERLISAETLRRNRVMQKRHGHEVVIAFP-YWRNGKLVNCKYRDFNKKFWQE 277
+++ AY ER +S + +R RV ++ I FP +G L K+ ++ +
Sbjct: 120 SDVLAYLTGERGLSEDAVRAYRVGEQGR----TIVFPSLLPDGTLAFVKFLGIDRSPEGK 175
Query: 278 KDT------EKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 330
K T E V +G I+ + +I+I EGE+D L+ + G + +SVP G +
Sbjct: 176 KITRVEAGCEPVLFGWQAIDRNAREIVITEGEIDALTAWDFG-IPALSVPFGGGIGAKQA 234
Query: 331 NVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK 390
+ SE + L Q I LA D D G+ A E+A R+GR RC RV P+
Sbjct: 235 WIESEFE------------RLGQFEVIYLALDNDREGELAAGEIANRLGRHRCRRVILPR 282
Query: 391 KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 450
K D++ + A L ++E A L ++ +++ + T E G
Sbjct: 283 K-DLNECRKAG-----LSAEEIRECFAAARTLDPPELRRAGEFTEDVLRLFWPTDDQEPG 336
Query: 451 ISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 510
+ + + PGEL+I TG +GKS+ + + + + G + L S+E R+
Sbjct: 337 YRLPFAKIGDKLVFRPGELSIWTGPSGAGKSQVLSHALVAMGDQ-GARVCLASLEMAPRQ 395
Query: 511 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN---TFSLIRCENDSLPSIKW 567
++++++ G+ +R T WL F+L+ S+
Sbjct: 396 SLKRMVKQ-----------AGNVDRPTEPFLRVVMDWLDGWCWVFALV-----GKVSVAK 439
Query: 568 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 627
+L++ + A R+G VID L + + + V +++T +A A HV V
Sbjct: 440 LLEIFEYARARYGCDVFVIDSLMRLGIGSEDYEGQEKAVFEIVT----WAVEKAVHVHLV 495
Query: 628 AHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
AH R+ G P L D+ G++ N + + RNR E
Sbjct: 496 AHARKADRASGGVPELEDVKGASEIGANAFNILGVWRNRKLE 537
>gi|300919987|ref|ZP_07136446.1| conserved hypothetical protein [Escherichia coli MS 115-1]
gi|300412934|gb|EFJ96244.1| conserved hypothetical protein [Escherichia coli MS 115-1]
Length = 626
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 115/499 (23%), Positives = 205/499 (41%), Gaps = 72/499 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 538
E + + H G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRH-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 659 GIVIHRNRDPEAGPIDRVQ 677
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|407894501|ref|ZP_11153531.1| hypothetical protein Dmas2_11064 [Diplorickettsia massiliensis 20B]
Length = 621
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 103/451 (22%), Positives = 189/451 (41%), Gaps = 54/451 (11%)
Query: 228 ERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFN-----KKFWQEKDTEK 282
ER ++ +T+ ++ +K G +V FPYWR+ ++V KY + K+ EKD E
Sbjct: 135 ERKLTEKTIEDFKIKEK--GRNIV--FPYWRDNEIVFVKYLSIDRVNGKKQISVEKDCEP 190
Query: 283 VFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKY 341
+G I + + + EGE+D +++ + G + +SVP G + K+
Sbjct: 191 CLFGWHLIPNNARSVTLCEGEIDAMTLHQYG-IAVLSVPFGGGTG------------NKH 237
Query: 342 QYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDAN 401
++L L +I L D D G++ A +L R+G RC V P KDAN
Sbjct: 238 RWLDYEFDRLSVFDKIYLCFDNDEEGKSAATDLIARLGAHRCRLVNLPH-------KDAN 290
Query: 402 EVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNE 460
L + P ++ + ++ L + DE+ ++ GI W+ +
Sbjct: 291 ACLQAEMTPLTMRSLFNESKTLDPQELKQASSFVDEVINEFYPPDNQPLGIYPPWQKAKD 350
Query: 461 LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI 520
EL+I TG GKS+++ +I + + + + S+E K ++LL +
Sbjct: 351 KILFRQEELSIWTGTNGHGKSQFLGHIILSAMKQDA-RVCIASLELK----PKRLLYRLT 405
Query: 521 KKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW--VLDLAKAAVLR 578
++ E+ T W + + D L + K +L++ A R
Sbjct: 406 RQ-------AAGLEKPTEGYIRAIHEWYDDRLLIF----DLLGTAKADRLLEVFLYAWKR 454
Query: 579 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG 638
+ + VID + +LD +S+ + + + + F + CH+ V HPR+ +
Sbjct: 455 YRINMFVIDSFLKLD----ISEDDYTAQKRFIEKLCDFKNQYPCHIHLVVHPRKNADEHY 510
Query: 639 EPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
+P L D G+ + DN + RN+ E
Sbjct: 511 QPGKL-DNKGTGAISDLADNCFTVWRNKKKE 540
>gi|416596989|ref|ZP_11781804.1| hypothetical protein SEEM867_09762 [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322678748|gb|EFY74804.1| hypothetical protein SEEM867_09762 [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
Length = 626
Score = 89.4 bits (220), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 116/497 (23%), Positives = 200/497 (40%), Gaps = 66/497 (13%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G + +SVP G ++ + E + L + I ++ DG
Sbjct: 216 DCMSYAQYG-IPALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDG 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLPH-------KDINECLMNGVAEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W L + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWETLAYNFQFREAELTLVNGVNGHGKT 372
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 541
E + + G K + S+E K +L K + + E + +F
Sbjct: 373 EVVGHMALEAMRQ-GIKTCVASLELKP-----GILLKRLTRQSTCCKMPPVLEIESAFKF 426
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
+ WL + E ++++ A R+G++ +ID +
Sbjct: 427 YDDRLWLFGLTGTAKAER--------LIEIFTYARRRYGIQLFIIDSLMKCGIGDDDYNG 478
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 661
+ +V + F H+ V H R+ + +P D+ GS + DN +
Sbjct: 479 QKAFVDALCD----FKNKTNSHIILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDNLFI 533
Query: 662 IHRNRDPEAGPIDRVQV 678
I RN+ E + RVQ
Sbjct: 534 IWRNKARERA-LQRVQA 549
>gi|386623412|ref|YP_006143140.1| gp61 [Escherichia coli O7:K1 str. CE10]
gi|349737149|gb|AEQ11855.1| gp61 [Escherichia coli O7:K1 str. CE10]
Length = 610
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 205/499 (41%), Gaps = 72/499 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 88 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEIVKRYEVVSGKVWNGEREL 139
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G ++++ EGE+
Sbjct: 140 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVREVVLCEGEI 199
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 200 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 246
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 247 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 299
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 300 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 356
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 538
E + + G K + S+E K ++L + P E + +
Sbjct: 357 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 407
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 408 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 459
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 460 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 514
Query: 659 GIVIHRNRDPEAGPIDRVQ 677
+I RN+ E + RVQ
Sbjct: 515 LFIIWRNKARERA-LQRVQ 532
>gi|417754549|ref|ZP_12402644.1| DNA replication protein [Escherichia coli DEC2B]
gi|419000946|ref|ZP_13548502.1| DNA replication protein [Escherichia coli DEC1B]
gi|419006467|ref|ZP_13553921.1| DNA replication protein [Escherichia coli DEC1C]
gi|419022410|ref|ZP_13569657.1| DNA replication protein [Escherichia coli DEC2A]
gi|419027743|ref|ZP_13574938.1| DNA replication protein [Escherichia coli DEC2C]
gi|419033501|ref|ZP_13580599.1| DNA replication protein [Escherichia coli DEC2D]
gi|377850349|gb|EHU15314.1| DNA replication protein [Escherichia coli DEC1C]
gi|377853082|gb|EHU17988.1| DNA replication protein [Escherichia coli DEC1B]
gi|377868729|gb|EHU33460.1| DNA replication protein [Escherichia coli DEC2A]
gi|377879495|gb|EHU44068.1| DNA replication protein [Escherichia coli DEC2B]
gi|377883920|gb|EHU48438.1| DNA replication protein [Escherichia coli DEC2D]
gi|377884517|gb|EHU49027.1| DNA replication protein [Escherichia coli DEC2C]
Length = 561
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 39 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 90
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 91 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 150
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 151 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 197
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 198 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 250
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 251 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 307
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 538
E + + G K + S+E K ++L + P E + +
Sbjct: 308 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 358
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 359 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 410
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 411 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 465
Query: 659 GIVIHRNRDPEAGPIDRVQ 677
+I RN+ E + RVQ
Sbjct: 466 LFIIWRNKARERA-LQRVQ 483
>gi|416898467|ref|ZP_11928013.1| hypothetical protein ECSTEC7V_2822 [Escherichia coli STEC_7v]
gi|417629649|ref|ZP_12279886.1| hypothetical protein ECSTECMHI813_2572 [Escherichia coli
STEC_MHI813]
gi|424816777|ref|ZP_18241928.1| prophage protein [Escherichia fergusonii ECD227]
gi|325497797|gb|EGC95656.1| prophage protein [Escherichia fergusonii ECD227]
gi|327251981|gb|EGE63653.1| hypothetical protein ECSTEC7V_2822 [Escherichia coli STEC_7v]
gi|345372396|gb|EGX04360.1| hypothetical protein ECSTECMHI813_2572 [Escherichia coli
STEC_MHI813]
Length = 610
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 88 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 139
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 140 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 199
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 200 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 246
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 247 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 299
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 300 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 356
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 538
E + + G K + S+E K ++L + P E + +
Sbjct: 357 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 407
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 408 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 459
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 460 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 514
Query: 659 GIVIHRNRDPEAGPIDRVQ 677
+I RN+ E + RVQ
Sbjct: 515 LFIIWRNKARERA-LQRVQ 532
>gi|215485814|ref|YP_002328245.1| replication protein [Escherichia coli O127:H6 str. E2348/69]
gi|215263886|emb|CAS08224.1| predicted replication protein [Escherichia coli O127:H6 str.
E2348/69]
Length = 626
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 538
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 659 GIVIHRNRDPEAGPIDRVQ 677
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|432386191|ref|ZP_19629087.1| hypothetical protein WCY_01439 [Escherichia coli KTE16]
gi|430909112|gb|ELC30497.1| hypothetical protein WCY_01439 [Escherichia coli KTE16]
Length = 626
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 538
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 659 GIVIHRNRDPEAGPIDRVQ 677
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|418997890|ref|ZP_13545482.1| DNA replication protein [Escherichia coli DEC1A]
gi|419038543|ref|ZP_13585600.1| DNA replication protein [Escherichia coli DEC2E]
gi|377842929|gb|EHU07976.1| DNA replication protein [Escherichia coli DEC1A]
gi|377897872|gb|EHU62243.1| DNA replication protein [Escherichia coli DEC2E]
Length = 610
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 88 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 139
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 140 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 199
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 200 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 246
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 247 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 299
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 300 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 356
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 538
E + + G K + S+E K ++L + P E + +
Sbjct: 357 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 407
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 408 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 459
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 460 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 514
Query: 659 GIVIHRNRDPEAGPIDRVQ 677
+I RN+ E + RVQ
Sbjct: 515 LFIIWRNKARERA-LQRVQ 532
>gi|237704866|ref|ZP_04535347.1| prophage protein [Escherichia sp. 3_2_53FAA]
gi|419950691|ref|ZP_14466901.1| putative replication protein [Escherichia coli CUMT8]
gi|422357968|ref|ZP_16438629.1| conserved hypothetical protein [Escherichia coli MS 110-3]
gi|422837566|ref|ZP_16885539.1| hypothetical protein ESPG_00225 [Escherichia coli H397]
gi|428781787|ref|YP_007111555.1| hypothetical protein mEp043_055 [Enterobacteria phage mEp043 c-1]
gi|432755197|ref|ZP_19989746.1| hypothetical protein WEA_02182 [Escherichia coli KTE22]
gi|432788267|ref|ZP_20022398.1| hypothetical protein A1U3_02388 [Escherichia coli KTE65]
gi|432821716|ref|ZP_20055407.1| hypothetical protein A1Y5_03321 [Escherichia coli KTE118]
gi|432827853|ref|ZP_20061503.1| hypothetical protein A1YA_04578 [Escherichia coli KTE123]
gi|226901232|gb|EEH87491.1| prophage protein [Escherichia sp. 3_2_53FAA]
gi|315288260|gb|EFU47659.1| conserved hypothetical protein [Escherichia coli MS 110-3]
gi|371610475|gb|EHN99003.1| hypothetical protein ESPG_00225 [Escherichia coli H397]
gi|388416406|gb|EIL76296.1| putative replication protein [Escherichia coli CUMT8]
gi|392506175|gb|AFM76466.1| hypothetical protein mEp043_055 [Enterobacteria phage mEp043 c-1]
gi|431301926|gb|ELF91123.1| hypothetical protein WEA_02182 [Escherichia coli KTE22]
gi|431336834|gb|ELG23935.1| hypothetical protein A1U3_02388 [Escherichia coli KTE65]
gi|431367368|gb|ELG53845.1| hypothetical protein A1Y5_03321 [Escherichia coli KTE118]
gi|431371746|gb|ELG57451.1| hypothetical protein A1YA_04578 [Escherichia coli KTE123]
Length = 626
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 538
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 659 GIVIHRNRDPEAGPIDRVQ 677
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|191165477|ref|ZP_03027318.1| gp61 [Escherichia coli B7A]
gi|190904400|gb|EDV64108.1| gp61 [Escherichia coli B7A]
Length = 626
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 538
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 659 GIVIHRNRDPEAGPIDRVQ 677
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|422352041|ref|ZP_16432842.1| hypothetical protein HMPREF9542_01385 [Escherichia coli MS 117-3]
gi|324019905|gb|EGB89124.1| hypothetical protein HMPREF9542_01385 [Escherichia coli MS 117-3]
Length = 626
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 538
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 659 GIVIHRNRDPEAGPIDRVQ 677
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|298381536|ref|ZP_06991135.1| conserved hypothetical protein [Escherichia coli FVEC1302]
gi|298278978|gb|EFI20492.1| conserved hypothetical protein [Escherichia coli FVEC1302]
Length = 626
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 538
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 659 GIVIHRNRDPEAGPIDRVQ 677
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|293446711|ref|ZP_06663133.1| replication protein [Escherichia coli B088]
gi|291323541|gb|EFE62969.1| replication protein [Escherichia coli B088]
Length = 626
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 538
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 659 GIVIHRNRDPEAGPIDRVQ 677
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|301019525|ref|ZP_07183691.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|299882176|gb|EFI90387.1| conserved hypothetical protein [Escherichia coli MS 196-1]
Length = 610
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 88 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEIVKRYEVVSGKVWNGEREL 139
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 140 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 199
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 200 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 246
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 247 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 299
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 300 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 356
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 538
E + + G K + S+E K ++L + P E + +
Sbjct: 357 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 407
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 408 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 459
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 460 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 514
Query: 659 GIVIHRNRDPEAGPIDRVQ 677
+I RN+ E + RVQ
Sbjct: 515 LFIIWRNKARERA-LQRVQ 532
>gi|293410741|ref|ZP_06654317.1| conserved hypothetical protein [Escherichia coli B354]
gi|291471209|gb|EFF13693.1| conserved hypothetical protein [Escherichia coli B354]
Length = 626
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 114/496 (22%), Positives = 203/496 (40%), Gaps = 66/496 (13%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 541
E + + G K + S+E K +L K + + E + +F
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKP-----GILLKRLTRQATCCKIPPVLEIDSAFKF 426
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
+ W+ + + ++++ A R+G++ +ID +
Sbjct: 427 YDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDDYNG 478
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 661
+ +V + F HV V H R+ + +P D+ GS + DN +
Sbjct: 479 QKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDNLFI 533
Query: 662 IHRNRDPEAGPIDRVQ 677
I RN+ E + RVQ
Sbjct: 534 IWRNKARERA-LQRVQ 548
>gi|238912290|ref|ZP_04656127.1| hypothetical protein SentesTe_14311 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 626
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/497 (23%), Positives = 200/497 (40%), Gaps = 66/497 (13%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T L+ Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLD--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G + +SVP G ++ + E + L + I ++ DG
Sbjct: 216 DCMSYAQYG-IPALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDG 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLPH-------KDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W L + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWETLAYNFQFREAELTLVNGVNGHGKT 372
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 541
E + + G K + S+E K +L K + + E + +F
Sbjct: 373 EVVGHMALEAMRQ-GIKTCVASLELKP-----GILLKRLTRQSTCCKMPPVLEIESAFKF 426
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
+ WL + E ++++ A R+G++ +ID +
Sbjct: 427 YDDRLWLFGLTGTAKAER--------LIEIFTYARRRYGIQLFIIDSLMKCGIGDDDYNG 478
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 661
+ +V + F H+ V H R+ + +P D+ GS + DN +
Sbjct: 479 QKAFVDALCD----FKNKTNSHIILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDNLFI 533
Query: 662 IHRNRDPEAGPIDRVQV 678
I RN+ E + RVQ
Sbjct: 534 IWRNKARERA-LQRVQA 549
>gi|417537395|ref|ZP_12190297.1| DNA primase/helicase [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|353668512|gb|EHD05676.1| DNA primase/helicase [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
Length = 626
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 112/504 (22%), Positives = 203/504 (40%), Gaps = 69/504 (13%)
Query: 189 NNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--H 246
+ R + + + K R +T LE Y R IS E +R V+ + +
Sbjct: 99 DARREKRFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVAKRYEVVSGKVWN 150
Query: 247 GHEVV--IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIII 298
G + + FPY R+G+L+ K D K E D E +G ++ G +++
Sbjct: 151 GERELSALVFPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVL 210
Query: 299 VEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRII 358
EGE+D +S + G + +SVP G ++ + E + L + I
Sbjct: 211 CEGEIDCMSYAQYG-IPALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIF 257
Query: 359 LATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVE 417
++ D D G+ A E+A R+G RC V P +KD NE LM + + + +
Sbjct: 258 ISMDVDDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIG 310
Query: 418 NAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVP 476
A + L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV
Sbjct: 311 TASYFDPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVN 367
Query: 477 NSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSA 533
GK+E + + G K + S+E K ++L + P E +
Sbjct: 368 GHGKTEVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID----- 421
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
+ +F + W+ + + ++++ A R+G++ +ID +
Sbjct: 422 ---SAFKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCG 470
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
+ +V + F HV V H R+ + +P D+ GS
Sbjct: 471 IGDDDYNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAIT 525
Query: 654 NKCDNGIVIHRNRDPEAGPIDRVQ 677
+ DN +I RN+ E + RVQ
Sbjct: 526 DLTDNLFIIWRNKARERA-LQRVQ 548
>gi|300898217|ref|ZP_07116573.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|422805050|ref|ZP_16853482.1| hypothetical protein ERIG_01192 [Escherichia fergusonii B253]
gi|300358094|gb|EFJ73964.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|324114078|gb|EGC08051.1| hypothetical protein ERIG_01192 [Escherichia fergusonii B253]
Length = 626
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEIVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 538
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 659 GIVIHRNRDPEAGPIDRVQ 677
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|432415722|ref|ZP_19658347.1| hypothetical protein WGI_01230 [Escherichia coli KTE44]
gi|430943046|gb|ELC63175.1| hypothetical protein WGI_01230 [Escherichia coli KTE44]
Length = 626
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEIVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 538
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 659 GIVIHRNRDPEAGPIDRVQ 677
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|419924549|ref|ZP_14442437.1| putative replication protein [Escherichia coli 541-15]
gi|388389923|gb|EIL51432.1| putative replication protein [Escherichia coli 541-15]
Length = 630
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 114/496 (22%), Positives = 203/496 (40%), Gaps = 66/496 (13%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 108 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 159
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 160 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 219
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 220 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 266
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 267 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 319
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 320 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 376
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 541
E + + G K + S+E K +L K + + E + +F
Sbjct: 377 EVVGHMALEAMRQ-GVKTCIASLELKP-----GILLKRLTRQATCCKIPPVLEIDSAFKF 430
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
+ W+ + + ++++ A R+G++ +ID +
Sbjct: 431 YDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDDYNG 482
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 661
+ +V + F HV V H R+ + +P D+ GS + DN +
Sbjct: 483 QKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDNLFI 537
Query: 662 IHRNRDPEAGPIDRVQ 677
I RN+ E + RVQ
Sbjct: 538 IWRNKARERA-LQRVQ 552
>gi|419260312|ref|ZP_13802747.1| DNA replication protein [Escherichia coli DEC10B]
gi|378110998|gb|EHW72588.1| DNA replication protein [Escherichia coli DEC10B]
Length = 610
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 88 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 139
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 140 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWRALDAGVRAVVLCEGEI 199
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 200 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 246
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 247 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 299
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 300 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 356
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 538
E + + G K + S+E K ++L + P E + +
Sbjct: 357 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 407
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 408 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 459
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 460 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 514
Query: 659 GIVIHRNRDPEAGPIDRVQ 677
+I RN+ E + RVQ
Sbjct: 515 LFIIWRNKARERA-LQRVQ 532
>gi|417516209|ref|ZP_12179150.1| DNA primase/helicase [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|353654777|gb|EHC95968.1| DNA primase/helicase [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
Length = 561
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 114/497 (22%), Positives = 200/497 (40%), Gaps = 66/497 (13%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K +R +T LE Y R IS E ++R V+ + +G +
Sbjct: 39 KKFSRPDRKKIVRYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 90
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 91 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 150
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G + +SVP G ++ + E + L + I ++ D
Sbjct: 151 DCMSYAQYG-IPALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 197
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P KD NE LM + + + + A +
Sbjct: 198 DDVGREAAREIASRLGEHRCRLVTLPH-------KDINECLMNGVTEDEIWQYIGTASYF 250
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D ++A+Y + ++ + W L + ELT+V GV GK+
Sbjct: 251 DPEELYSAREFYQDTVNAFYGK---QQYLFNPPWETLAYNFQFREAELTLVNGVNGHGKT 307
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 541
E + + G K + S+E K +L K + + E + +F
Sbjct: 308 EVVGHMALEAMRQ-GVKTCVASLELKP-----GILLKRLTRQSTCCKMPPVLEIESAFKF 361
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
+ WL + E ++++ A R+G++ +ID +
Sbjct: 362 YDDRLWLFGLTGTAKAER--------LIEIFTYARRRYGIQLFIIDSLMKCGIGDDDYNG 413
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 661
+ +V + F H+ V H R+ + +P D+ GS + DN +
Sbjct: 414 QKAFVDALCD----FKNKTNSHIILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDNLFI 468
Query: 662 IHRNRDPEAGPIDRVQV 678
I RN+ E + RVQ
Sbjct: 469 IWRNKARERA-LQRVQA 484
>gi|399528819|ref|YP_006560867.1| DNA primase/helicase [Salmonella phage vB_SosS_Oslo]
gi|392293168|gb|AFM54449.1| DNA primase/helicase [Salmonella phage vB_SosS_Oslo]
Length = 626
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 114/497 (22%), Positives = 200/497 (40%), Gaps = 66/497 (13%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K +R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIVRYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G + +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-IPALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLPH-------KDINECLMNGVAEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D ++A+Y + ++ + W L + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTVNAFYGKQ---QYLFNPPWETLAYNFQFREAELTLVNGVNGHGKT 372
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 541
E + + G K + S+E K +L K + + E + +F
Sbjct: 373 EVVGHMALEAMRQ-GVKTCVASLELKP-----GILLKRLTRQSTCCKMPPVLEIESAFKF 426
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
+ WL + E ++++ A R+G++ +ID +
Sbjct: 427 YDDRLWLFGLTGTAKAER--------LIEIFTYARRRYGIQLFIIDSLMKCGIGDDDYNG 478
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 661
+ +V + F H+ V H R+ + +P D+ GS + DN +
Sbjct: 479 QKAFVDALCD----FKNKTNSHIILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDNLFI 533
Query: 662 IHRNRDPEAGPIDRVQV 678
I RN+ E + RVQ
Sbjct: 534 IWRNKARERA-LQRVQA 549
>gi|194738223|ref|YP_002113588.1| gp61 [Salmonella enterica subsp. enterica serovar Schwarzengrund
str. CVM19633]
gi|194713725|gb|ACF92946.1| gp61 [Salmonella enterica subsp. enterica serovar Schwarzengrund
str. CVM19633]
Length = 610
Score = 85.9 bits (211), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 115/497 (23%), Positives = 199/497 (40%), Gaps = 66/497 (13%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
K+FS+ K R +T LE Y R IS E +R V+ + +G +
Sbjct: 88 KRFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVAKRYEVVSGKVWNGEREL 139
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ FPY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 140 SALVFPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 199
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G + +SVP G ++ + E + L + I ++ D
Sbjct: 200 DCMSYAQYG-IQALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 246
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P KD NE LM + + + + A +
Sbjct: 247 DDVGREAAREIASRLGEHRCRLVTLPH-------KDINECLMNGVTEDEIWQYIGTASYF 299
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W L + ELT+V GV GK+
Sbjct: 300 DPEELYSAREFYHDTINAFYGKQ---QYLFNPPWETLAYNFQFREAELTLVNGVNGHGKT 356
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 541
E + + G K + S+E K +L K + + E + +F
Sbjct: 357 EVVGHMALEAMRQ-GVKTCVASLELKP-----GILLKRLTRQSTCCKMPPVLEIESAFKF 410
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
+ WL + E ++++ A R+G++ +ID +
Sbjct: 411 YDDRLWLFGLTGTAKAER--------LIEIFTYARRRYGIQLFIIDSLMKCGIGDDDYNG 462
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 661
+ +V + F H+ V H R+ + +P D+ GS + DN +
Sbjct: 463 QKAFVDALCD----FKNKTNSHIILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDNLFI 517
Query: 662 IHRNRDPEAGPIDRVQV 678
I RN+ E + RVQ
Sbjct: 518 IWRNKARERA-LQRVQA 533
>gi|224583090|ref|YP_002636888.1| hypothetical protein SPC_1284 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224467617|gb|ACN45447.1| hypothetical protein SPC_1284 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 626
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 106/466 (22%), Positives = 189/466 (40%), Gaps = 55/466 (11%)
Query: 225 YFAERLISAETLRRNRVMQKR--HGHEVV--IAFPYWRNGKLVNCKY-----RDFNKKFW 275
Y R IS E ++R V+ + +G + + PY R+G+L+ K D K
Sbjct: 127 YLQSRGISPEVVKRYEVVSGKVWNGERELDALVLPYKRDGELLQVKRISTERPDGKKVIM 186
Query: 276 QEKDTEKVFYGLDDIE-GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPS 334
E D E +G ++ G +++ EGE+D +S + G + +SVP G ++ +
Sbjct: 187 AEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYG-IPALSVPFGGGKGAKQQWIEF 245
Query: 335 EEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV 394
E + L + + ++ DGD G+ A E+A R+G RC V P
Sbjct: 246 EYHN------------LDRFEEVFISMDGDDVGREAAREIASRLGEHRCRLVTLPH---- 289
Query: 395 DHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGIS 452
KD NE LM + + + + A + L++ R+++ D I+A+Y + ++ +
Sbjct: 290 ---KDINECLMNGVTEDEIWQYIGTAAYFDPEELYSAREFYHDTINAFYGKQ---QYLFN 343
Query: 453 TGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 512
W L + ELT+V GV GK+E + + G K + S+E K
Sbjct: 344 PPWETLAYNFQFREAELTLVNGVNGHGKTEVVGHMALEAMRQ-GVKTCVASLELKP---- 398
Query: 513 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLA 572
+L K + + E + +F + WL + E ++++
Sbjct: 399 -GILLKRLTRQSTCCKMPPVLEIESAFKFYDDRLWLFGLTGTAKAER--------LIEIF 449
Query: 573 KAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ 632
A R+G++ +ID + + +V + F H+ V H R+
Sbjct: 450 TYARRRYGIQLFIIDSLMKCGIGDDDYNGQKAFVDALCD----FKNKTNSHIILVTHSRK 505
Query: 633 LHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQV 678
+ +P D+ GS + DN +I RN+ E + RVQ
Sbjct: 506 -GDSEEKPTGKMDVKGSGAITDLTDNLFIIWRNKARERA-LQRVQA 549
>gi|300936072|ref|ZP_07151016.1| conserved hypothetical protein [Escherichia coli MS 21-1]
gi|300458765|gb|EFK22258.1| conserved hypothetical protein [Escherichia coli MS 21-1]
Length = 626
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 203/499 (40%), Gaps = 72/499 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEIVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------CKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 538
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 659 GIVIHRNRDPEAGPIDRVQ 677
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|62362274|ref|YP_224199.1| gp61 [Enterobacteria phage ES18]
gi|58339117|gb|AAW70532.1| gp61 [Enterobacteria phage ES18]
Length = 626
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 112/505 (22%), Positives = 199/505 (39%), Gaps = 69/505 (13%)
Query: 189 NNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--H 246
+ R + + + K +R +T LE Y R IS E +R V+ + +
Sbjct: 99 DARREKRFSRPDRKKIVRYVTRTESHLE--------YLQSRGISPEVAKRYEVVSGKVWN 150
Query: 247 GHEVV--IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIII 298
G + + PY R+G+L+ K D K E D E +G ++ G +++
Sbjct: 151 GERELNALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVL 210
Query: 299 VEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRII 358
EGE+D +S + G + +SVP G ++ + E + L + I
Sbjct: 211 CEGEIDCMSYAQYG-IPALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIF 257
Query: 359 LATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVE 417
++ D D G+ A E+A R+G RC V P KD NE LM + + + +
Sbjct: 258 ISMDVDDVGREAAREIASRLGEHRCRLVTLPH-------KDINECLMNGVTEDEIWQYIG 310
Query: 418 NAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVP 476
A + L++ R+++ D I+A+Y + ++ + W L + ELT+V GV
Sbjct: 311 TASYFDPEELYSAREFYQDTINAFYGKQ---QYLFNPPWETLAYNFQFREAELTLVNGVN 367
Query: 477 NSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSA 533
GK+E + + G K + S+E K ++L + P E
Sbjct: 368 GHGKTEVVGHMALEAMRQ-GVKTCVASLELKPGVLLKRLTRQSTCCKTPPVLEIE----- 421
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
+ +F + WL + E ++++ A R+G++ +ID +
Sbjct: 422 ---SAFKFYDDRLWLFGLTGTAKAER--------LIEIFTYARRRYGIQLFIIDSLMKCG 470
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
+ +V + F H+ V H R+ + +P D+ GS
Sbjct: 471 IGDDDYNGQKAFVDSLCD----FKNKTNSHIILVTHSRK-GDSEEKPTGKMDVKGSGAIT 525
Query: 654 NKCDNGIVIHRNRDPEAGPIDRVQV 678
+ DN +I RN+ E + RVQ
Sbjct: 526 DLTDNLFIIWRNKARERA-LQRVQA 549
>gi|451988633|gb|AGF91110.1| primase/helicase [Synechococcus phage S-CBP2]
Length = 528
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 116/474 (24%), Positives = 197/474 (41%), Gaps = 61/474 (12%)
Query: 251 VIAFPYW-RNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSM 308
V+ FPY ++G++V K RD K F W K+ EK +G + G ++I EGEMD LS+
Sbjct: 86 VLRFPYTDQSGRVVGAKERDKEKNFRWIGKNVEKRLFGQNLFGGGKRLVITEGEMDALSV 145
Query: 309 EEAG-FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPG 367
EA VS+ GA + Y+ L N + I+L D D PG
Sbjct: 146 WEAQPKWPVVSIYSGAAGA--------------YKDLQNQLSFCLSFDEIVLLFDNDEPG 191
Query: 368 QALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGL 427
Q + + A+ ++ K + +KDA+E L A+++ + NA Y +
Sbjct: 192 QEASVKCAQLFPPDKV------KIGSMGAYKDASEALQAGDGEAIRQAIWNAAPYSPKTI 245
Query: 428 FNFRDYFDEIDAYYHRTSGDEFGISTGW--RALNELYNVLP-GELTIVTGVPNSGKSEWI 484
+ R FD + G W LN + L GEL VT GKS +
Sbjct: 246 IDGRSLFDLLRRPM-------VGRDADWPYDGLNSVTGGLRLGELCTVTAGSGVGKSTFC 298
Query: 485 -DALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 543
+A +N+ G+ ++E ++ +L+ KP N E + F++
Sbjct: 299 GEAAQALVNQ--GFSVGYIALEESIQRTGLRLMTVEANKPLHLDNT--VDEDVFRSAFQK 354
Query: 544 ----GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 599
G+ +L + F + P + +L+ + V V+ +++D + L S
Sbjct: 355 SVGSGRVFLRDGFGSVD------PDV--ILNDIRFMVKARDVKFVILDHLSIL-LSGNAS 405
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPP----NLYDISGSAHFINK 655
E + + +T ++ F + + ++H R+LHN G +L + GS +
Sbjct: 406 DDERKMIDVTMTKLRSFVEETRVGLILISHLRRLHNDKGHEDGGQVSLSHLRGSHSIVQL 465
Query: 656 CDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTGEYMDI 708
D + I RN D + +R ++N+ G GEA L YN+ TG ++
Sbjct: 466 SDLVVSIERN----LASGDNTSL-LRVLKNRFNGQTGEAGVLQYNKETGRMREL 514
>gi|424836483|ref|ZP_18261130.1| TOPRIM domain protein [Clostridium sporogenes PA 3679]
gi|365977009|gb|EHN13113.1| TOPRIM domain protein [Clostridium sporogenes PA 3679]
Length = 609
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 129/526 (24%), Positives = 211/526 (40%), Gaps = 69/526 (13%)
Query: 174 RAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRA--------- 224
R KC G T + D+ + + +++I + ++ EP +E RA
Sbjct: 56 RFKCFSCGKTYDIFDHYQQYKHMNFIQAIESIIKDYSLYIDYEPFKSERRAIKKATEYKQ 115
Query: 225 -------YFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRN-GKLVNCKYRDFNK---- 272
Y R IS +T + V K H + +V F Y G+ + KYR
Sbjct: 116 NINAILPYLELRKISKDTAKY--VGLKAHDNNIV--FEYKNELGEHIANKYRKAGNATKG 171
Query: 273 -KFWQEKDTE-KVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 330
K W E T + +D ++ ++I EGE+D L++ E+G N VSVP GA S
Sbjct: 172 CKMWFEAGTNINTLFNMDKVDMTKPLVITEGELDCLALIESGHKNSVSVPTGANS----- 226
Query: 331 NVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK 390
Y+++ +L+Q +IL D D G +A R+ + V K
Sbjct: 227 ----------YEWVEVNYSWLEQFKEVILWFDNDKAGIEGMSVIAPRIPADIVKTVNSNK 276
Query: 391 KNDVDHFKDANEVLMYLGP-GALKEV--VENAELYPIMGLFNFRDYFDEIDAYYHRTSGD 447
KD NE+L G LKE+ + A++ I + N D FD +A RT
Sbjct: 277 A------KDINEILYKFGKQTVLKELKKAKEADIENIEDIGNIPD-FDINEAEKIRTGIK 329
Query: 448 EFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME-- 505
EF ++ + G + ++TG +GKS I+ + G+K + S E
Sbjct: 330 EFD--------KVMHGFVLGSVNVLTGYNGAGKSTIINQMCIAEPIRQGFKTFIFSGELT 381
Query: 506 --NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLP 563
N + + ++ K + + G + + + E + +L+N L ND
Sbjct: 382 RPNLIYWLTQTMVIKD-QMISLKNKEGREYSKASDKAKEMIRNYLNN--KLFIYSNDFDT 438
Query: 564 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623
S +L+ R V+ V+D +D + S+ E Q + +K+FA +
Sbjct: 439 SKTTILETMNKLAKRKNVKCFVLDNLMTIDLECKESE-ELNAQKQFIRDLKKFAIKYNAV 497
Query: 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
+ VAHPR+ N YD+ GS N D I +HR D +
Sbjct: 498 IHIVAHPRK-PNEKNAIVTKYDVCGSGDITNLSDYVIAMHRYTDEQ 542
>gi|62178911|ref|YP_215328.1| hypothetical protein SC0341 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|375113221|ref|ZP_09758391.1| hypothetical protein SCA50_0364 [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|62126544|gb|AAX64247.1| orf, partial conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|322713367|gb|EFZ04938.1| hypothetical protein SCA50_0364 [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
Length = 626
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 103/458 (22%), Positives = 184/458 (40%), Gaps = 56/458 (12%)
Query: 225 YFAERLISAETLRRNRVMQKR-----HGHEVVIAFPYWRNGKLVNCKY-----RDFNKKF 274
Y R IS E ++R V+ + G + ++ PY R+G+L+ K D K
Sbjct: 127 YLQSRGISPEVVKRYEVVSGKVWNGERGLDALV-LPYKRDGELLQVKRISTERPDGKKVI 185
Query: 275 WQEKDTEKVFYGLDDIE-GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVP 333
E D E +G ++ G +++ EGE+D +S + G + +SVP G ++ +
Sbjct: 186 MAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYG-IPALSVPFGGGKGAKQQWIE 244
Query: 334 SEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKND 393
E + L + I ++ D D G+ A E+A R+G RC V P
Sbjct: 245 FEYHN------------LDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTLPH--- 289
Query: 394 VDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGI 451
KD NE LM + + + + A + L++ R+++ D I+A+Y + ++
Sbjct: 290 ----KDINECLMNGVTEDEIWQYIGTASYFDPEELYSAREFYHDTINAFYGKQ---QYLF 342
Query: 452 STGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511
+ W L + ELT+V GV GK+E + + G K + S+E K
Sbjct: 343 NPPWETLAYNFQFREAELTLVNGVNGHGKTEVVGHMALEAMRQ-GVKTCVASLELKP--- 398
Query: 512 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 571
+L K + + E + +F + WL + E ++++
Sbjct: 399 --GILLKRLTRQSTCCKMPPVLEIESAFKFYDDRLWLFGLTGTAKAER--------LIEI 448
Query: 572 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPR 631
A R+G++ +ID + + +V + F H+ V H R
Sbjct: 449 FTYARRRYGIQLFIIDSLMKCGIGDDDYNGQKAFVDALCD----FKNKTNSHIILVTHSR 504
Query: 632 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
+ + +P D+ GS + DN +I RN+ E
Sbjct: 505 K-GDSEEKPTGKMDVKGSGAITDLTDNLFIIWRNKARE 541
>gi|429106174|ref|ZP_19168043.1| DNA primase/helicase [Cronobacter malonaticus 681]
gi|426292897|emb|CCJ94156.1| DNA primase/helicase [Cronobacter malonaticus 681]
Length = 498
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 128/273 (46%), Gaps = 37/273 (13%)
Query: 225 YFAERLISAETLRRNRVMQKR--HGHEVV--IAFPYWRNGKLVNCKY----RDFNKK-FW 275
Y R IS ET + V+ + +G + + FPY R+G+L+ K R KK
Sbjct: 106 YLQSRGISPETAKAYEVVSGKVWNGERELDALVFPYKRDGELIQVKRISTERPNGKKVIM 165
Query: 276 QEKDTEKVFYGLDDIEGE-SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPS 334
E D E +G ++ + +++ EGE+D +S + G +N +SVP G ++ +
Sbjct: 166 AEGDCEPCLFGWQALDSKVRSVVLCEGEIDCMSYSQYG-INALSVPFGGGKGAKQQWIEF 224
Query: 335 EEQDT-KYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKND 393
E + +++ +W ++ D D GQ A E+A R+G RC VR P+
Sbjct: 225 EFHNLDRFEEIW-------------ISMDNDEVGQEAAREIASRLGEHRCRMVRLPR--- 268
Query: 394 VDHFKDANEVLM-YLGPGALKEVVENAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGI 451
KD NE LM + + + + A + L++ R+++ D I+A+Y + ++
Sbjct: 269 ----KDINECLMDGISEDEIWQCLGGAAFFDPEELYSAREFYQDTINAFYGKQ---QYLF 321
Query: 452 STGWRALNELYNVLPGELTIVTGVPNSGKSEWI 484
+ W +L + ELT+V GV GK+E +
Sbjct: 322 NPPWESLAYNFQFREAELTLVNGVNGHGKTEVV 354
>gi|168051585|ref|XP_001778234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670331|gb|EDQ56901.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 44/52 (84%)
Query: 556 RCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVS 607
R E++ LPS+ WVL+L KAAV+RHG+ LVIDPYNELDHQRP +QTE EY++
Sbjct: 40 RHEDEELPSVDWVLNLVKAAVMRHGIHELVIDPYNELDHQRPENQTEMEYMA 91
>gi|281208797|gb|EFA82972.1| T7-like mitochondrial DNA helicase [Polysphondylium pallidum PN500]
Length = 710
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/425 (25%), Positives = 182/425 (42%), Gaps = 63/425 (14%)
Query: 252 IAFPYWRN----GKLVN--CKYRDFNKKFWQE---KDTEKVFYGLDDIEGES-DIIIVEG 301
I FP W N G ++ CK R K Q K + F+G + ++ +I++ EG
Sbjct: 315 ITFP-WTNLDKKGNVITHRCKLRALESKALQRIEPKGGKWGFFGWHTVPLDAKEIVLTEG 373
Query: 302 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 361
E D +++ ++ +S+P+GA +S+ +P E+ K YLW
Sbjct: 374 EYDAMAVYQSTGKPTISLPNGA-NSLPIALLPLLERFEKI-YLW---------------M 416
Query: 362 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 421
D D PGQ A + A ++G +R + VR K+ + + KDAN+ L L L +++E+A
Sbjct: 417 DDDIPGQEGAAKFAEKLGIQRTFIVR-TKQGEDNGPKDANDAL--LQGRDLNKILESASN 473
Query: 422 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW-RALNELYNV-LPGELTIVTGVPNSG 479
P + +F D I + R G+ + W N+L GELTI +G G
Sbjct: 474 IPHDQICDFSDVRASIHSEL-RNPSSVNGVKSQWFPTFNKLLKGHRKGELTIFSGPTGIG 532
Query: 480 KSEWIDALICNINEHAGWKFVLCSMENKVREHARKL--------LEKHIKKPFFEANYGG 531
K+ + L + + G + + S E KV A+K+ LE+H+ NY
Sbjct: 533 KTTLLSQLSLDFSTQ-GTRTLWGSFEIKVSRLAKKMMGQYAGVDLEQHVD------NYNK 585
Query: 532 SAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 591
A ++F + F + + VLD + AV H V +++D
Sbjct: 586 IA-----DDFAALPMYFMRFFGSTQVDK--------VLDAMEYAVYVHDVEHIILDNLQF 632
Query: 592 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAH 651
+ + + E + + + +++FA H+ V HPR+ + P N+ DI G+A
Sbjct: 633 MLSGQTKAIERFETMDESIEKLRKFATQKNVHITLVIHPRKQLD-ADTPLNISDIFGTAK 691
Query: 652 FINKC 656
C
Sbjct: 692 ATQVC 696
>gi|317487302|ref|ZP_07946097.1| toprim domain-containing protein [Bilophila wadsworthia 3_1_6]
gi|316921492|gb|EFV42783.1| toprim domain-containing protein [Bilophila wadsworthia 3_1_6]
Length = 598
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 136/584 (23%), Positives = 234/584 (40%), Gaps = 84/584 (14%)
Query: 144 CPKC--NGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSK 201
CP+C NGGD +L+ + D G+ V CG+ +Q + +
Sbjct: 26 CPQCQRNGGDWNGDNLARYSDGHGYCHV-------CGYY---------ETAQGGSGRMDR 69
Query: 202 MKTIREITEDSLELEPLGNELRAYFAERLISAETLRR-NRVMQKRHGHEVVIAFPYWRNG 260
K D + +P+ + R I+ ET + K G IA Y G
Sbjct: 70 QK-------DPVPFDPVPVDAFMALKARGITQETCEHFGYGIGKAGGKYCHIAPLYDHEG 122
Query: 261 KLVNCKYRDFNKKF-WQEKDTEKVFYGLDD-IEGESDIIIVEGEMDKLSMEE--AGFLNC 316
LV R K+F W+ +E V +G G +I+ EGE+D LS+ +
Sbjct: 123 ILVAQHLRFEGKEFRWRGSASEAVLFGQTLWRRGGRKVIVTEGEIDCLSISQLQGNKWPV 182
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
VS+P+G+ S +Y+ +L+ ++ A D D PGQ A+E A
Sbjct: 183 VSLPNGSSSGA--------------KYIRASLEWLESFDEVVFAFDMDEPGQKAAKECAL 228
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 436
+ + R P KDANE L+ L + + A Y G+ + + +++
Sbjct: 229 LLSPGKAKIARLP-------MKDANECLVAGKGKELIDALWGAVPYRPDGIRSGAELWED 281
Query: 437 IDAYYHRTSGDEFGISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHA 495
I G + LN +L V GEL + T GKS ++ + ++
Sbjct: 282 I------KKPPPAGYEIPYPGLNGKLGGVRLGELVLFTAGSGIGKSTIVNEIAYHLMMAH 335
Query: 496 GWKFVLCSMENKVREHARKLLEKHIKKPF-FEANYGGSAERMTVEEFE----QGKAWLSN 550
G + ++E +AR+ L H+ KP A + E F+ GK ++ +
Sbjct: 336 GLTLGVMALEENPARNARRYLGIHLNKPLHLPAAHASVPEADLKAAFDAVMGNGKWYIYD 395
Query: 551 TFSLIRCENDSLPSIKWVLDLA---KAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVS 607
F + D+L S L + KA VL H +V+ +E + ++E + +
Sbjct: 396 HFG--SSDIDTLLSKLRYLAVGLGCKAIVLDH--ISIVVSGLDESE-----GESERKIID 446
Query: 608 QMLTMVKRFAQHHACHVWFVAH---PRQLHNW-VGEPPNLYDISGSAHFINKCDNGIVIH 663
+++T ++ + V V H P + ++ G P +L D+ GS D +V+
Sbjct: 447 KLMTRLRSLIEETGILVLAVVHLKRPDKGKSYNEGRPVSLTDLRGSGSLEQVSD--VVVS 504
Query: 664 RNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTGEYM 706
RD + D + +R ++N+ +G G A + Y+R TG +
Sbjct: 505 LERDQQGDEPD--EATIRVLKNRPLGITGLAGTVRYDRETGRLL 546
>gi|66806239|ref|XP_636842.1| T7-like mitochondrial DNA helicase [Dictyostelium discoideum AX4]
gi|60465241|gb|EAL63335.1| T7-like mitochondrial DNA helicase [Dictyostelium discoideum AX4]
Length = 772
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 111/470 (23%), Positives = 195/470 (41%), Gaps = 64/470 (13%)
Query: 252 IAFPYWR-----NGKLVNCKYRDFNKKFWQE---KDTEKVFYGLDDIEGES-DIIIVEGE 302
I FP+ N ++ CK R +K Q K + F+G I ++ +II+ EGE
Sbjct: 325 ITFPWTTLDKKGNIQVHRCKLRSTKEKSLQRIEPKGGKWGFFGWHTIPSDAKEIILTEGE 384
Query: 303 MDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATD 362
D +++ + + +S+P+GA +S+ +P E+ K YLW D
Sbjct: 385 YDAMAVYQETGIPTISLPNGA-NSLPIALLPLLERFEKI-YLW---------------MD 427
Query: 363 GDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422
D PG A + + ++G +R + V K+ND + KDAN+ L L LK ++ A
Sbjct: 428 DDVPGMEGAAKFSEKLGIQRTFIVS-TKQNDPNGPKDANDAL--LAGKDLKAILSTAANI 484
Query: 423 PIMGLFNFRDYFDEIDAYYHRTSGDEFGI----STGWRALNE-LYNVLPGELTIVTGVPN 477
P + +F D + + H D + S + + N+ L GELTI +G
Sbjct: 485 PHDQICDFSD----VRSIIHNELKDPLSVIGKQSKWFPSFNKVLKGHRKGELTIFSGPTG 540
Query: 478 SGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE--R 535
GK+ + L + G + + S E KV ARK+L + F N E +
Sbjct: 541 IGKTSVLSQLSLDFCSQ-GTRTLWGSFELKVPRLARKMLSQ-----FSNCNLDKHVENYQ 594
Query: 536 MTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQ 595
+ F + F + + V+D + AV V +V+D +
Sbjct: 595 EIADNFSNMPMYFLRFFGSTQVDK--------VIDAMEYAVYVQDVEHIVLDNLQFMLGS 646
Query: 596 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINK 655
+ E + + +++FA H+ V HPR+ + + N+ DI G+A +
Sbjct: 647 QAKGIERFEIMDDSIEKLRKFASQKNVHITLVIHPRKQD--IDQVLNINDIFGTAKATQE 704
Query: 656 CDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
DN I++ +++ Q + +N+ G +G LS+ + T +
Sbjct: 705 ADNVIILQNSKNN--------QRYLDIKKNRFSGDLGIIPLSFEKETNRF 746
>gi|281416177|ref|YP_003347912.1| DNA primase/helicase [Vibrio phage N4]
gi|237701484|gb|ACR16477.1| DNA primase/helicase [Vibrio phage N4]
Length = 568
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 117/483 (24%), Positives = 196/483 (40%), Gaps = 82/483 (16%)
Query: 252 IAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEE 310
IA Y G LV K RD +K F + K ++ + +G + G +II EGE+D L++
Sbjct: 108 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 165
Query: 311 AGFLNC----VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 366
A C VS+P GA ++ + Y +Q IIL D D
Sbjct: 166 AQIQGCKYPVVSIPLGAKAAKKCIAANLD--------------YFEQFEEIILMFDQDDA 211
Query: 367 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE---NAELYP 423
G+A A+E A + + P KDANE L+ G KEV++ NA +
Sbjct: 212 GRAAAQECAEIMPMGKTKIAVLP-------LKDANECLL---AGKTKEVIDAIWNAAPFV 261
Query: 424 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSE 482
G+ N + + D F + ++ LN++ GE+ ++T GKS
Sbjct: 262 PDGVVNAASMKTRVKEFLKNMETDGF-LFGNFKRLNDMTLGARGGEVVMITSGSGMGKST 320
Query: 483 WIDALICNINEHAGWKFVLCSMENKVRE---------------HARKLLEKHIKKPFFEA 527
+ L + A +C++E V E +++L + I+ F+
Sbjct: 321 FARQLF--LQWQANMPVGICALEEAVEETVLDMLGLANSVRLRQSKELQAQWIEDGTFDK 378
Query: 528 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV--RGLV 585
NY F+ G L ++F+ E+D L L+K A + G+ R ++
Sbjct: 379 NYDAL--------FDSGNLNLYDSFA--ESESDRL--------LSKMAYMVDGLGCRAIL 420
Query: 586 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 641
+D + + + E + + +++T +K FA+ V + H + G P
Sbjct: 421 LDHISIVVSAMDDNSDERKIIDRLMTKLKAFAKSKGVVVAVICHLKNPEKGKPHEEGRPV 480
Query: 642 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNR 700
+ D+ GS D I + RN+ E D V VR ++ + G G A +L ++R
Sbjct: 481 TITDLRGSGALRQLSDTIIALERNQQGE----DPNMVRVRILKCRFTGETGVACYLKFDR 536
Query: 701 VTG 703
TG
Sbjct: 537 QTG 539
>gi|416570385|ref|ZP_11766046.1| hypothetical protein SEEM41H_03152 [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|363575669|gb|EHL59519.1| hypothetical protein SEEM41H_03152 [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
Length = 626
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 108/496 (21%), Positives = 194/496 (39%), Gaps = 68/496 (13%)
Query: 189 NNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--H 246
+ R + + + K R +T LE Y R IS E +R V+ + +
Sbjct: 99 DARCEKRFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVAKRYEVVSGKVWN 150
Query: 247 GHEVV--IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIII 298
G + + PY R+G+L+ K D K E D E +G ++ G +++
Sbjct: 151 GERELNALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVL 210
Query: 299 VEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRII 358
EGE+D +S + G + +SVP G ++ + E + L + I
Sbjct: 211 CEGEIDCMSYAQYG-IPALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIF 257
Query: 359 LATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVE 417
++ D D G+ A E+A R+G RC V P KD NE LM + + + +
Sbjct: 258 ISMDVDDVGREAAREIASRLGEHRCRLVTLPH-------KDINECLMNGVTEDEIWQYIG 310
Query: 418 NAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVP 476
A + L++ R+++ D ++A+Y + ++ + W L + ELT+V GV
Sbjct: 311 AASYFDPEELYSAREFYQDTVNAFYGKQ---QYLFNPPWETLAYNFQFREAELTLVNGVN 367
Query: 477 NSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSA 533
GK+E + + G K + S+E K ++L + P E
Sbjct: 368 GHGKTEVVGHMALEAMRQ-GVKTCVASLELKPGVLLKRLTRQSTCCKTPPVLEIE----- 421
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
+ +F + WL + E ++++ A R+G++ +ID +
Sbjct: 422 ---SAFKFYDDRLWLFGLTGTAKAER--------LIEIFTYARRRYGIQLFIIDSLMKCG 470
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
+ +V + F H+ V H R+ + +P D+ GS
Sbjct: 471 IGDDDYNGQKAFVDALCD----FKNKTNSHIILVTHSRK-GDSEEKPTGKMDVKGSGAIT 525
Query: 654 NKCDNGIVIHRNRDPE 669
+ DN +I RN+ E
Sbjct: 526 DLTDNLFIIWRNKARE 541
>gi|404369188|ref|ZP_10974532.1| hypothetical protein FUAG_00824 [Fusobacterium ulcerans ATCC 49185]
gi|313688474|gb|EFS25309.1| hypothetical protein FUAG_00824 [Fusobacterium ulcerans ATCC 49185]
Length = 770
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 105/227 (46%), Gaps = 32/227 (14%)
Query: 218 LGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQE 277
LG + +Y R IS + L R R G + P K+V KYR +KK E
Sbjct: 88 LGGDWLSYLKGRSISEKGLNRFC----RLGKNNTMMIPITDGEKVVAIKYRTIDKKLSCE 143
Query: 278 K-DTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEE 336
+ F ++E +S +IIVEGE+D LS E+G+ N VS+P G KN+
Sbjct: 144 TGSSSDYFVNWQNVENKSYLIIVEGEIDLLSAVESGYDNVVSIPFGC------KNLKC-- 195
Query: 337 QDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVG--RERCWRVRWPKKNDV 394
+ N K +++ S+IILA D D PG ++ ++ + + + V K
Sbjct: 196 -------IDNQKKWIESFSKIILAVDNDVPGIECKNQIIDKLSSIKSKLYTVEMGK---- 244
Query: 395 DHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYY 441
+KD NE+LM G + +V++ A+ F F ++ E D YY
Sbjct: 245 --YKDFNEILMAEGTDGIIKVIQAADRVG----FGFTPFYQEADGYY 285
>gi|194100328|ref|YP_002003758.1| gp4 [Enterobacteria phage EcoDS1]
gi|193201323|gb|ACF15802.1| gp4 [Enterobacteria phage EcoDS1]
Length = 562
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 140/587 (23%), Positives = 224/587 (38%), Gaps = 89/587 (15%)
Query: 144 CPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMK 203
CP C D+ + DG + C WK L + K+ S +
Sbjct: 18 CPDCGSSDANGVY------SDGHMYCFAC-DPSVAWKKGDMGLTEGYTPSGGRKQVSNLL 70
Query: 204 TIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVV-IAFPYWRNGKL 262
T E++ PL R +S E ++ G ++V +A Y R+G
Sbjct: 71 TF---GENAGRYVPL--------PARSLSMEICKKYSYWVGNMGGKMVQVADYYDRSGAK 119
Query: 263 VNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEA--GFLNCVSV 319
V K RD K F + + +G G I+I EGE+D LS+ + G VS+
Sbjct: 120 VGQKVRDAEKNFTAIGSVKSDMLFGSQLWNGGKKIVITEGEIDALSVAQVQDGKYPVVSL 179
Query: 320 PDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVG 379
P G+ S+ KK + + + YL Q IIL D D PG+ E+ A +
Sbjct: 180 PLGSKSA--KKAMAANLE------------YLDQFEEIILMFDMDEPGRQAIEDAAPVLP 225
Query: 380 RERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDA 439
R K ++ +KDAN L A+ + + NA+ + G+ + D
Sbjct: 226 AGRV------KVAFINGYKDANAALQAKDFKAITDAIWNAKPFVPAGVVSAASLKDRTRE 279
Query: 440 YYHR--TSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGW 497
+ T G F T A+ GEL +VT GKS ++ L+ G
Sbjct: 280 AMLKAETEGLMFSSCTTLNAMT--LGARAGELIMVTSGSGMGKSTFVRQLLLEWG-RGGK 336
Query: 498 KFVLCSMENKVREHARKLL----------EKHIKKPFFEANYGGSAERMTVEEFEQGKAW 547
+ + +E V E + L+ K +K+ E G + + F K
Sbjct: 337 RVGMAMLEEAVEETVQDLMGLDNNVRLRQSKELKQAILE---DGRFDEWYDKLFGDDKFH 393
Query: 548 LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV------SQT 601
L ++F+ E D+L AK A + G+ VI LDH V +
Sbjct: 394 LYDSFA--ESEEDTL--------FAKLAYMVDGLDCDVI----LLDHISIVVSGMEDNSD 439
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPPNLYDISGSAHFINKCD 657
E + + +++T +K+FA+ V + H + G P ++ D+ GS D
Sbjct: 440 ERKTIDRIMTRLKKFAKTKGVVVVVICHLKNPEKGKSHEEGRPVSITDLRGSGALRQLSD 499
Query: 658 NGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF-LSYNRVTG 703
I + RN+ + I V +R ++ + G G A L YN+ TG
Sbjct: 500 TIIALERNQQGDTPNI----VQLRLLKCRFTGDTGVAGQLEYNKTTG 542
>gi|418253124|ref|ZP_12878414.1| putative replication protein P [Shigella flexneri 6603-63]
gi|397901644|gb|EJL17986.1| putative replication protein P [Shigella flexneri 6603-63]
Length = 509
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 144/326 (44%), Gaps = 47/326 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 482 EWIDALICNINEHAGWKFVLCSMENK 507
E + + G K + S+E K
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELK 397
>gi|326424980|ref|YP_004286202.1| putative DNA primase/helicase [Pseudomonas phage phi15]
gi|325048384|emb|CBZ41997.1| putative DNA primase/helicase [Pseudomonas phage phi15]
Length = 571
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 105/473 (22%), Positives = 198/473 (41%), Gaps = 55/473 (11%)
Query: 246 HGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMD 304
+G +A Y +G +V K RD NK+F+ K +G G +++ EGE+D
Sbjct: 101 NGETKQVANYYGDDGSIVAQKVRDRNKEFFIAGSMPKDALFGKHLWSGGKKVVVTEGEID 160
Query: 305 KLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATD 362
L++ + G VS+P GA +D K N K + IIL D
Sbjct: 161 CLTVAQLQGGKYPVVSIPRGA-------------KDAKKTIAAN-KDWFSGFQEIILMFD 206
Query: 363 GDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422
D G+ A E A + R + + P KDANE ++ A+ + + NAE Y
Sbjct: 207 MDEDGRKAALEAAEVLPAGRVFIAKLP-------LKDANECILNGHAKAVMDQIWNAEKY 259
Query: 423 PIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSE 482
G+ + + + I A S + ++ ++ GE+ ++T SGKS
Sbjct: 260 VPDGVVSAKSLKERIKAKKLAAS---LPLVAPYKLKKMTKDMREGEVILITSGSGSGKST 316
Query: 483 WIDALICNINEHAGWKFVLCSMENKVREHARKL----LEKHIKK---PFFEANYGGSAER 535
++ + N+ ++G + +E V E + + + K I++ + E + + +R
Sbjct: 317 FVRQNVHNLFSNSGIPVGVAMLEESVEETVQDIVGLEMGKRIRQEPDSYTEEQFDETFDR 376
Query: 536 MTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQ 595
+ FE L ++F+ E+ + +++++D+ G + +V+D + +
Sbjct: 377 I----FESDLLHLYDSFAE-SAEDRLMARLEYMVDV-------EGCKVIVLDHVSIVISA 424
Query: 596 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPPNLYDISGSAH 651
E + + +++T +K FA+ + V+ + H + G P D+ GS
Sbjct: 425 MDGDTDERKMIDRLMTKLKSFAKSKSVCVFVICHLKNPDKGKPHEEGRPVMATDLRGSGG 484
Query: 652 FINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 703
D I + RN+ A P + R ++ + G G A ++ YN+ TG
Sbjct: 485 LRQLSDTIIAVERNQQG-ANP---NLILFRVLKCRFTGETGPAGYMEYNKFTG 533
>gi|424526998|ref|ZP_17970725.1| putative replication protein P [Escherichia coli EC4421]
gi|424533151|ref|ZP_17976512.1| putative replication protein P [Escherichia coli EC4422]
gi|425168992|ref|ZP_18567480.1| putative replication protein P [Escherichia coli FDA507]
gi|428996727|ref|ZP_19065342.1| AAA domain protein [Escherichia coli 94.0618]
gi|390850528|gb|EIP13896.1| putative replication protein P [Escherichia coli EC4421]
gi|390861259|gb|EIP23528.1| putative replication protein P [Escherichia coli EC4422]
gi|408082888|gb|EKH16838.1| putative replication protein P [Escherichia coli FDA507]
gi|427245964|gb|EKW13229.1| AAA domain protein [Escherichia coli 94.0618]
Length = 903
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 139/312 (44%), Gaps = 53/312 (16%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 39 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 90
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 91 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 150
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 151 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 197
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 198 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 250
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W++L + + ELT+V GV GK+
Sbjct: 251 DPEELYSAREFYQDTINAFYGK---QQYLFNPPWKSLADKFQFREAELTLVNGVNGHGKA 307
Query: 482 EWIDALICNINE 493
C +NE
Sbjct: 308 -------CPLNE 312
>gi|66473270|gb|AAY46279.1| DNA primase/helicase [Vibriophage VP4]
Length = 504
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 116/483 (24%), Positives = 196/483 (40%), Gaps = 82/483 (16%)
Query: 252 IAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEE 310
IA Y G LV K RD +K F + K ++ + +G + G +II EGE+D L++
Sbjct: 44 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 101
Query: 311 AGFLNC----VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 366
A C VS+P GA ++ + Y +Q IIL D D
Sbjct: 102 AQIQGCKYPVVSIPLGAKAAKKCIAANLD--------------YFEQFEEIILMFDQDDA 147
Query: 367 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE---NAELYP 423
G+A A+E A + + P KDANE L+ G KEV++ NA +
Sbjct: 148 GRAAAQECAEIMPMGKTKIAVLP-------LKDANECLL---AGKTKEVIDAIWNAAPFV 197
Query: 424 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSE 482
G+ N + + D F + ++ LN++ GE+ ++T GKS
Sbjct: 198 PDGVVNAASMKTRVKEFLKNMETDGF-LFGNFKRLNDMTLGARGGEVVMITSGSGMGKST 256
Query: 483 WIDALICNINEHAGWKFVLCSMENKVRE---------------HARKLLEKHIKKPFFEA 527
+ L + A +C++E V E +++L + I+ F+
Sbjct: 257 FARQLF--LQWQANMPVGICALEEAVEETVLDMLGLANSVRLRQSKELQAQWIEDGTFDK 314
Query: 528 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV--RGLV 585
NY F+ G L ++F+ E+D L L+K A + G+ R ++
Sbjct: 315 NYDAL--------FDSGNLNLYDSFA--ESESDRL--------LSKMAYMVDGLGCRAIL 356
Query: 586 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 641
+D + + + E + + +++T +K FA+ V + H + G P
Sbjct: 357 LDHISIVVSAMDDNSDERKIIDRLMTKLKAFAKSKGVVVAVICHLKNPEKGKPHEEGRPV 416
Query: 642 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNR 700
+ D+ GS D I + RN+ + D V VR ++ + G G A +L ++R
Sbjct: 417 TITDLRGSGALRQLSDTIIALERNQQGD----DPNMVRVRILKCRFTGETGVACYLKFDR 472
Query: 701 VTG 703
TG
Sbjct: 473 QTG 475
>gi|383389399|gb|AFH14415.1| DNA primase/helicase [Vibrio phage VP3]
Length = 574
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 116/483 (24%), Positives = 196/483 (40%), Gaps = 82/483 (16%)
Query: 252 IAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEE 310
IA Y G LV K RD +K F + K ++ + +G + G +II EGE+D L++
Sbjct: 114 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 171
Query: 311 AGFLNC----VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 366
A C VS+P GA ++ + Y +Q IIL D D
Sbjct: 172 AQIQGCKYPVVSIPLGAKAAKKCIAANLD--------------YFEQFEEIILMFDQDDA 217
Query: 367 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE---NAELYP 423
G+A A+E A + + P KDANE L+ G KEV++ NA +
Sbjct: 218 GRAAAQECAEIMPMGKTKIAVLP-------LKDANECLL---AGKTKEVIDAIWNAAPFV 267
Query: 424 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSE 482
G+ N + + D F + ++ LN++ GE+ ++T GKS
Sbjct: 268 PDGVVNAASMKTRVKEFLKNMETDGF-LFGNFKRLNDMTLGARGGEVVMITSGSGMGKST 326
Query: 483 WIDALICNINEHAGWKFVLCSMENKVRE---------------HARKLLEKHIKKPFFEA 527
+ L + A +C++E V E +++L + I+ F+
Sbjct: 327 FARQLF--LQWQANMPVGICALEEAVEETVLDMLGLANSVRLRQSKELQAQWIEDGTFDK 384
Query: 528 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV--RGLV 585
NY F+ G L ++F+ E+D L L+K A + G+ R ++
Sbjct: 385 NYDAL--------FDSGNLNLYDSFA--ESESDRL--------LSKMAYMVDGLGCRAIL 426
Query: 586 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 641
+D + + + E + + +++T +K FA+ V + H + G P
Sbjct: 427 LDHISIVVSAMDDNSDERKIIDRLMTKLKAFAKSKGVVVAVICHLKNPEKGKPHEEGRPV 486
Query: 642 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNR 700
+ D+ GS D I + RN+ + D V VR ++ + G G A +L ++R
Sbjct: 487 TITDLRGSGALRQLSDTIIALERNQQGD----DPNMVRVRILKCRFTGETGVACYLKFDR 542
Query: 701 VTG 703
TG
Sbjct: 543 QTG 545
>gi|323512045|gb|ADX87506.1| DNA primase/helicase [Vibrio phage ICP3_2009_B]
gi|323512093|gb|ADX87553.1| DNA primase/helicase [Vibrio phage ICP3_2009_A]
Length = 568
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 115/483 (23%), Positives = 195/483 (40%), Gaps = 82/483 (16%)
Query: 252 IAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEE 310
IA Y G LV K RD +K F + K ++ + +G + G +II EGE+D L++
Sbjct: 108 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 165
Query: 311 AGFLNC----VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 366
A C VS+P GA ++ + Y +Q IIL D D
Sbjct: 166 AQIQGCKYPVVSIPLGAKAAKKCIAANLD--------------YFEQFEEIILMFDQDDA 211
Query: 367 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE---NAELYP 423
G+ A+E A + + P KDANE L+ G KEV++ NA +
Sbjct: 212 GRTAAQECAEIMPMGKTKIAVLP-------LKDANECLL---AGKTKEVIDAIWNAAPFV 261
Query: 424 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSE 482
G+ N + + D F + ++ LN++ GE+ ++T GKS
Sbjct: 262 PDGVVNAASMKTRVKEFLKNMETDGF-LFGNFKRLNDMTLGARGGEVVMITSGSGMGKST 320
Query: 483 WIDALICNINEHAGWKFVLCSMENKVRE---------------HARKLLEKHIKKPFFEA 527
+ L + A +C++E V E +++L + I+ F+
Sbjct: 321 FARQLF--LQWQANMPVGICALEEAVEETVLDMLGLANSVRLRQSKELQAQWIEDGTFDK 378
Query: 528 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV--RGLV 585
NY F+ G L ++F+ E+D L L+K A + G+ R ++
Sbjct: 379 NYDAL--------FDSGNLNLYDSFA--ESESDRL--------LSKMAYMVDGLGCRAIL 420
Query: 586 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 641
+D + + + E + + +++T +K FA+ V + H + G P
Sbjct: 421 LDHISIVVSAMDANSDERKIIDRLMTKLKAFAKSKGVVVAVICHLKNPEKGKPHEEGRPV 480
Query: 642 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNR 700
+ D+ GS D I + RN+ + D V VR ++ + G G A +L ++R
Sbjct: 481 TITDLRGSGALRQLSDTIIALERNQQGD----DPNMVRVRILKCRFTGETGVACYLKFDR 536
Query: 701 VTG 703
TG
Sbjct: 537 QTG 539
>gi|82793115|ref|YP_249580.2| Primase/Helicase [Vibriophage VP4]
Length = 569
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 116/483 (24%), Positives = 196/483 (40%), Gaps = 82/483 (16%)
Query: 252 IAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEE 310
IA Y G LV K RD +K F + K ++ + +G + G +II EGE+D L++
Sbjct: 109 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 166
Query: 311 AGFLNC----VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 366
A C VS+P GA ++ + Y +Q IIL D D
Sbjct: 167 AQIQGCKYPVVSIPLGAKAAKKCIAANLD--------------YFEQFEEIILMFDQDDA 212
Query: 367 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE---NAELYP 423
G+A A+E A + + P KDANE L+ G KEV++ NA +
Sbjct: 213 GRAAAQECAEIMPMGKTKIAVLP-------LKDANECLL---AGKTKEVIDAIWNAAPFV 262
Query: 424 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSE 482
G+ N + + D F + ++ LN++ GE+ ++T GKS
Sbjct: 263 PDGVVNAASMKTRVKEFLKNMETDGF-LFGNFKRLNDMTLGARGGEVVMITSGSGMGKST 321
Query: 483 WIDALICNINEHAGWKFVLCSMENKVRE---------------HARKLLEKHIKKPFFEA 527
+ L + A +C++E V E +++L + I+ F+
Sbjct: 322 FARQLF--LQWQANMPVGICALEEAVEETVLDMLGLANSVRLRQSKELQAQWIEDGTFDK 379
Query: 528 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV--RGLV 585
NY F+ G L ++F+ E+D L L+K A + G+ R ++
Sbjct: 380 NYDAL--------FDSGNLNLYDSFA--ESESDRL--------LSKMAYMVDGLGCRAIL 421
Query: 586 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 641
+D + + + E + + +++T +K FA+ V + H + G P
Sbjct: 422 LDHISIVVSAMDDNSDERKIIDRLMTKLKAFAKSKGVVVAVICHLKNPEKGKPHEEGRPV 481
Query: 642 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNR 700
+ D+ GS D I + RN+ + D V VR ++ + G G A +L ++R
Sbjct: 482 TITDLRGSGALRQLSDTIIALERNQQGD----DPNMVRVRILKCRFTGETGVACYLKFDR 537
Query: 701 VTG 703
TG
Sbjct: 538 QTG 540
>gi|18640487|ref|NP_570328.1| RP primase/helicase [Synechococcus phage P60]
gi|18478717|gb|AAL73266.1| primase/helicase [Synechococcus phage P60]
Length = 531
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 121/472 (25%), Positives = 197/472 (41%), Gaps = 57/472 (12%)
Query: 252 IAFPYWRNGK-LVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSME 309
I FPY+ N + LV K+R K F WQ K+ + +G I++ EGE D LS+
Sbjct: 87 IQFPYYDNSRQLVGYKHRGKEKDFRWQGKNPDNQLFGQQLWGKGKAIVVTEGEFDALSVF 146
Query: 310 EA-GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQ 368
+A VSVP+GA S+ KK + ++ YL N + IIL D D G
Sbjct: 147 QARKNWPVVSVPNGAQSA--KKALAAQ-----LTYLLNFE-------EIILMFDNDDAGI 192
Query: 369 ALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLF 428
AEE +R + +D +KDA+E + A+ + + N Y +
Sbjct: 193 QAAEECVSLFPADRVFTAF------IDGYKDASEAVSAKDYDAVTQAIWNKSTYTPKSII 246
Query: 429 NFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEW---I 484
+ R FD + H + + ALN L GEL +T +GKS I
Sbjct: 247 DGRTLFDVVTTPLHGRDAE-----YPFAALNSTTGGLRLGELVTITAGSGTGKSTLCGEI 301
Query: 485 DALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTV--EEFE 542
+ N ++ G+ ++E V+ +L+ KP N + E T
Sbjct: 302 AVSLINQDQRVGY----IALEESVKRTGLRLMTVAANKPLHLNNELPTDELRTAFDSTLG 357
Query: 543 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTE 602
G+ +L + F + + DSL + + L KA H V+ +V+D + L S E
Sbjct: 358 TGRVFLRDGFGSV--DPDSL--LNDIRFLTKA----HEVQWIVLDHLSILLSGNE-STDE 408
Query: 603 TEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPP----NLYDISGSAHFINKCDN 658
+ + ++T ++ F + + ++H R+ G +L + GS D
Sbjct: 409 RKMIDIVMTKLRSFVEETGIGMILISHLRRNQGDKGHEDGAQVSLSQLRGSHSIAQLSD- 467
Query: 659 GIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTGEYMDIV 709
+VI RD G +R Q +R ++N+ G G A LSY+ TG ++ +
Sbjct: 468 -LVIALERDISKGD-NRSQ--LRVLKNRFNGQTGPAGGLSYSVETGRMIEAL 515
>gi|224153845|ref|XP_002337405.1| predicted protein [Populus trichocarpa]
gi|222838982|gb|EEE77333.1| predicted protein [Populus trichocarpa]
Length = 415
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 43/286 (15%)
Query: 222 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKK--FWQEKD 279
++ + R I+ ET+ RV ++ G + FPY R G+LVN KYR+ +K QE
Sbjct: 111 VKEWLNGRGITDETIAAFRVAEQIRGGKTYAVFPYLRAGELVNVKYRNIAEKRDMRQEGG 170
Query: 280 TEKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQD 338
E +G I+ ++ + I EGE+D +++ + G + +SV GA +
Sbjct: 171 AEPCLFGWHLIDPKARTVAITEGEIDAMTLHQVG-IPALSVNAGAGN------------- 216
Query: 339 TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFK 398
+Q+L N L S I++ D D G+A A+E+ RR+G ERC V P+ K
Sbjct: 217 --HQWLENDWERLDCFSEILIFFDSDEAGKAGAQEIVRRLGLERCKLVTLPE-------K 267
Query: 399 DANEVLMYLGPGALKE----VVENAELYPIMGLFNFRDYFDEIDAYY---HRTSGDEFGI 451
DANE +L GA E + A+ + D+ + + + + H +GD
Sbjct: 268 DANE---FLQKGACGEDFWHATKEAKTLDPEEMRQASDFINRVKSMFYPAHDDAGDPV-- 322
Query: 452 STGWRALNEL--YNVLPGELTIVTGVPNSGKSEWIDALICNINEHA 495
R +L + GE+T+ TG GKS + ++ + +
Sbjct: 323 ---LRLDKDLDWFEFRSGEVTVWTGYNGHGKSLMLSQVLLGLMQQG 365
>gi|415814992|ref|ZP_11506590.1| hypothetical protein ECLT68_4996 [Escherichia coli LT-68]
gi|323170918|gb|EFZ56568.1| hypothetical protein ECLT68_4996 [Escherichia coli LT-68]
Length = 578
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 141/312 (45%), Gaps = 53/312 (16%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G +++Q +++Y L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKG-------AKQQWIEFEY-----HNLDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y S ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFY---SKQQYLFNPPWESLADKFQFREAELTLVNGVNGHGKA 372
Query: 482 EWIDALICNINE 493
C +NE
Sbjct: 373 -------CPLNE 377
>gi|419043141|ref|ZP_13590120.1| putative replication protein P [Escherichia coli DEC3A]
gi|419061530|ref|ZP_13608299.1| putative replication protein P [Escherichia coli DEC3D]
gi|419298444|ref|ZP_13840467.1| putative replication protein P [Escherichia coli DEC11C]
gi|377901378|gb|EHU65697.1| putative replication protein P [Escherichia coli DEC3A]
gi|377916111|gb|EHU80205.1| putative replication protein P [Escherichia coli DEC3D]
gi|378157382|gb|EHX18416.1| putative replication protein P [Escherichia coli DEC11C]
Length = 903
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 138/312 (44%), Gaps = 53/312 (16%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 39 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEIVKRYEVVSGKVWNGEREL 90
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 91 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 150
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 151 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 197
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 198 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 250
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 251 DPEELYSAREFYQDTINAFYGKK---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKA 307
Query: 482 EWIDALICNINE 493
C +NE
Sbjct: 308 -------CPLNE 312
>gi|419055997|ref|ZP_13602843.1| putative replication protein P [Escherichia coli DEC3C]
gi|420287693|ref|ZP_14789881.1| putative replication protein P [Escherichia coli TW10246]
gi|425412044|ref|ZP_18793820.1| putative replication protein P [Escherichia coli NE098]
gi|377911700|gb|EHU75868.1| putative replication protein P [Escherichia coli DEC3C]
gi|390789779|gb|EIO57222.1| putative replication protein P [Escherichia coli TW10246]
gi|408326309|gb|EKJ42130.1| putative replication protein P [Escherichia coli NE098]
Length = 952
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 138/312 (44%), Gaps = 53/312 (16%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 88 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEIVKRYEVVSGKVWNGEREL 139
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 140 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 199
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 200 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 246
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 247 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 299
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 300 DPEELYSAREFYQDTINAFYGKK---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKA 356
Query: 482 EWIDALICNINE 493
C +NE
Sbjct: 357 -------CPLNE 361
>gi|316934314|ref|YP_004109296.1| DNA primase [Rhodopseudomonas palustris DX-1]
gi|315602028|gb|ADU44563.1| DNA primase [Rhodopseudomonas palustris DX-1]
Length = 541
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 146/600 (24%), Positives = 233/600 (38%), Gaps = 104/600 (17%)
Query: 133 RCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCG-WKGSTSALVDNNR 191
R + G ++ CPKC D+ L +LD CF + CG W+ T + +
Sbjct: 7 RESAGFSHKEPCPKCGSKDN----LGRYLDGSA-----SCFGSGCGHWEPPTDGTYEPRK 57
Query: 192 SQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRR----NRVMQKRHG 247
K S K + + A +R ++ ETL + V K H
Sbjct: 58 D----KPISGSKEWK-------------TGVYAALDDRGLTRETLEKWDYQVSVEDKCH- 99
Query: 248 HEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKV-FYGLDDIEGESDIIIVEGEMDKL 306
IA G LV K R KKF ++ + YG+ G+ ++I EGE+D L
Sbjct: 100 ----IANYKNEKGALVAQKIRRAGKKFQCINGSKDMPLYGMWMAGGDLSVVITEGELDAL 155
Query: 307 SMEEA--GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMY---LKQASRIILAT 361
S+ +A VS+P+GA +D Y NC+ Y L + +I+L
Sbjct: 156 SVSQAFKHKYAVVSLPNGA-------------KDAAY----NCERYYEWLDRFKKIVLMF 198
Query: 362 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 421
D D PG+ AEE A + + + P+K D NEVL+ G AL + A+
Sbjct: 199 DQDDPGRQAAEEAAAVLPVGKVFIAVLPRK-------DPNEVLVEDGAAALVDAFWKAKP 251
Query: 422 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGIST-GWRALNE-LYNVLPGELTIVTGVPNSG 479
+ G+ + ++ +D T E G + G LNE L + GELT++T G
Sbjct: 252 WRPDGIVSGTEF--SVDDLMQAT---EPGYAIEGCPELNEKLLGLRKGELTLLTAGSGIG 306
Query: 480 KSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF--FEAN---YGGSAE 534
KS W L +++ G K +E + ++ A+ + H P AN
Sbjct: 307 KSTWARQLAYMLHQTHGLKIGNVFLEEQNKKTAQAYVALHNSVPLGKLRANPNIISRDQW 366
Query: 535 RMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH 594
E + N F + N L ++++ + K + LDH
Sbjct: 367 ETAAREVVHQRMCFYNHFGSLEQAN-LLSKLRYMATVEKCDFII-------------LDH 412
Query: 595 QRPV-------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV---GEPPNLY 644
V S+ E + + ++T + Q + + H ++ + G+ +L
Sbjct: 413 ISIVTSGMESSSEGERKDIDILMTKLASLVQETGVGIIAIVHLKRAKDKSFNEGDQISLS 472
Query: 645 DISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 703
D+ GSA N I + R++ E R Q VR ++ + G G A L YNR TG
Sbjct: 473 DLRGSAALEQLSFNVIALERDQQAEEDDA-RDQSTVRVLKCRETGDTGTADTLVYNRSTG 531
>gi|419350455|ref|ZP_13891792.1| putative replication protein P [Escherichia coli DEC13B]
gi|378199716|gb|EHX60175.1| putative replication protein P [Escherichia coli DEC13B]
Length = 629
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 138/311 (44%), Gaps = 46/311 (14%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKA 372
Query: 482 EWIDALICNIN 492
+D I N
Sbjct: 373 CPLDEPILLAN 383
>gi|419049965|ref|ZP_13596875.1| putative replication protein P [Escherichia coli DEC3B]
gi|377900239|gb|EHU64574.1| putative replication protein P [Escherichia coli DEC3B]
Length = 887
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 138/312 (44%), Gaps = 53/312 (16%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 23 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEIVKRYEVVSGKVWNGEREL 74
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 75 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 134
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 135 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 181
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 182 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 234
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 235 DPEELYSAREFYQDTINAFYGKK---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKA 291
Query: 482 EWIDALICNINE 493
C +NE
Sbjct: 292 -------CPLNE 296
>gi|70672400|gb|AAZ06403.1| mitochondrial helicase twinkle [Vermamoeba vermiformis]
Length = 724
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 103/464 (22%), Positives = 198/464 (42%), Gaps = 72/464 (15%)
Query: 262 LVNCKYRDFNKKFWQEKDTEK---VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVS 318
LV KYR K+ Q + +G + I E+ +II EGE D +++ +A L +S
Sbjct: 287 LVRYKYRALGGKWLQRLEPIGGGWCVFGWNLIAPETSVIITEGEFDAMAVYQATGLPAIS 346
Query: 319 VPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV 378
+P GA +P E L++ +I L D D GQ A++ A ++
Sbjct: 347 LPCGANC------LPVE-----------VITMLERFDKIYLWLDDDVVGQQAAQKYALKL 389
Query: 379 GRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEID 438
GRERC+ V K KDAN+ L L +++ A P + NF + E+
Sbjct: 390 GRERCYLVS-TKLGATTGPKDANDALRQ--GHDLGTILKAARRLPHKQILNFNEIRSEV- 445
Query: 439 AYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDAL---ICNI 491
+ + + R+ L +L G EL+I+TG GK+ I + +C+
Sbjct: 446 --FRELANPDQVAGRQMRSFPTLNKLLKGHRKGELSILTGPTGIGKTTIISQISMDLCSQ 503
Query: 492 NEHAGW-KFVLCSM---ENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAW 547
+ W F L ++ + + + A+K LEKH+ + F+ + ++F Q +
Sbjct: 504 GVNTLWGSFELNNVRLAKKMLNQFAQKNLEKHLAE--FD---------LWADKFSQVPLY 552
Query: 548 LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN---ELDHQRPVSQTETE 604
+R + ++ VLD AV + V +V+D ++ H + + +
Sbjct: 553 F------MRFHGGT--EVEAVLDAMDYAVYVYDVEHIVLDNLQFMMQVGHFKGYERFDQ- 603
Query: 605 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664
+ +++ ++FA H+ + HPR+ + G+ ++ + G+A + DN I++ +
Sbjct: 604 -LDSAISLFRKFATEKNVHITLIIHPRKEDD--GQALSINSVFGTAKATQEADNVIIVQK 660
Query: 665 NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708
+ + +N+ G +G Y++ + +Y ++
Sbjct: 661 G---------KYYRYLEVTKNRFSGDLGIVPYKYDKESHKYFEL 695
>gi|387881710|ref|YP_006312012.1| putative replication protein P [Escherichia coli Xuzhou21]
gi|419886627|ref|ZP_14407262.1| bacteriophage protein [Escherichia coli O111:H8 str. CVM9570]
gi|307604107|gb|ADN68417.1| P [Stx2 converting phage vB_EcoP_24B]
gi|386795168|gb|AFJ28202.1| putative replication protein P [Escherichia coli Xuzhou21]
gi|388364972|gb|EIL28785.1| bacteriophage protein [Escherichia coli O111:H8 str. CVM9570]
Length = 968
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 138/312 (44%), Gaps = 53/312 (16%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEIVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKK---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKA 372
Query: 482 EWIDALICNINE 493
C +NE
Sbjct: 373 -------CPLNE 377
>gi|325171290|ref|YP_004251261.1| DNA primase/helicase [Vibrio phage ICP3]
gi|323511996|gb|ADX87458.1| DNA primase/helicase [Vibrio phage ICP3]
Length = 568
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 115/483 (23%), Positives = 195/483 (40%), Gaps = 82/483 (16%)
Query: 252 IAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEE 310
IA Y G LV K RD +K F + K ++ + +G + G +II EGE+D L++
Sbjct: 108 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 165
Query: 311 AGFLNC----VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 366
A C VS+P GA ++ + Y +Q IIL D D
Sbjct: 166 AQIQGCKYPVVSIPLGAKAAKKCIAANLD--------------YFEQFEEIILMFDQDDA 211
Query: 367 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE---NAELYP 423
G+ A+E A + + P KDANE L+ G KEV++ NA +
Sbjct: 212 GRTAAQECAEIMPMGKTKIAVLP-------LKDANECLL---AGKTKEVIDAIWNAAPFV 261
Query: 424 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSE 482
G+ N + + D F + ++ LN++ GE+ ++T GKS
Sbjct: 262 PDGVVNAASMKTRVKEFLKNMETDGF-LFGNFKRLNDMTLGARGGEVVMITSGSGMGKST 320
Query: 483 WIDALICNINEHAGWKFVLCSMENKVRE---------------HARKLLEKHIKKPFFEA 527
+ L + A +C++E V E +++L + I+ F+
Sbjct: 321 FARQLF--LQWQANMPVGICALEEAVEETVLDMLGLANSVRLRQSKELQAQWIEDGTFDK 378
Query: 528 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV--RGLV 585
NY F+ G L ++F+ E+D L L+K A + G+ R ++
Sbjct: 379 NYDAL--------FDSGNLNLYDSFA--ESESDRL--------LSKMAYMVDGLGCRAIL 420
Query: 586 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 641
+D + + + E + + +++T +K FA+ V + H + G P
Sbjct: 421 LDHISIVVSAMDDNSDERKIIDRLMTKLKAFAKSKGVVVAVICHLKNPEKGKPHEEGRPV 480
Query: 642 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNR 700
+ D+ GS D I + RN+ + D V VR ++ + G G A +L ++R
Sbjct: 481 TITDLRGSGALRQLSDTIIALERNQQGD----DPNMVRVRILKCRFTGETGVACYLKFDR 536
Query: 701 VTG 703
TG
Sbjct: 537 QTG 539
>gi|383112841|ref|ZP_09933628.1| hypothetical protein BSGG_5269, partial [Bacteroides sp. D2]
gi|382948959|gb|EIC71887.1| hypothetical protein BSGG_5269, partial [Bacteroides sp. D2]
Length = 266
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 242 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 301
M + E I F Y+ G+L+N K+R K F + E + Y +D I G++ II EG
Sbjct: 128 MPQSGKKERCICFNYFEGGQLINTKFRALPKLFKMVQGAELIPYNIDSIVGQTSCIIHEG 187
Query: 302 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 361
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 188 ELDAASSIAAGFQSVISVPAGANSNLSWLDRFME-------------THFEDLKEIIIAV 234
Query: 362 DGDPPGQALAEELARRVGRERCWRVRW 388
D D G L EL R+G ERC V +
Sbjct: 235 DADSAGIRLRNELINRLGAERCRVVTY 261
>gi|323512142|gb|ADX87601.1| DNA primase/helicase [Vibrio phage ICP3_2008_A]
gi|323512190|gb|ADX87648.1| DNA primase/helicase [Vibrio phage ICP3_2007_A]
Length = 568
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 115/483 (23%), Positives = 195/483 (40%), Gaps = 82/483 (16%)
Query: 252 IAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEE 310
IA Y G LV K RD +K F + K ++ + +G + G +II EGE+D L++
Sbjct: 108 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 165
Query: 311 AGFLNC----VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 366
A C VS+P GA ++ + Y +Q IIL D D
Sbjct: 166 AQIQGCKYPVVSIPLGAKAAKKCIAANLD--------------YFEQFEEIILMFDQDDA 211
Query: 367 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE---NAELYP 423
G+ A+E A + + P KDANE L+ G KEV++ NA +
Sbjct: 212 GRTAAQECAEIMPMGKTKIAVLP-------LKDANECLL---AGKTKEVIDAIWNAAPFV 261
Query: 424 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSE 482
G+ N + + D F + ++ LN++ GE+ ++T GKS
Sbjct: 262 PDGVVNAASMKTRVKEFLKNMETDGF-LFGNFKRLNDMTLGARGGEVVMITSGSGMGKST 320
Query: 483 WIDALICNINEHAGWKFVLCSMENKVRE---------------HARKLLEKHIKKPFFEA 527
+ L + A +C++E V E +++L + I+ F+
Sbjct: 321 FARQLF--LQWQANMPVGICALEEAVEETVLDMLGLANSVRLRQSKELQAQWIEDGTFDK 378
Query: 528 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV--RGLV 585
NY F+ G L ++F+ E+D L L+K A + G+ R ++
Sbjct: 379 NYDAL--------FDSGNLNLYDSFA--ESESDRL--------LSKMAYMVDGLGCRAIL 420
Query: 586 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 641
+D + + + E + + +++T +K FA+ V + H + G P
Sbjct: 421 LDHISIVVSAMDDNSDERKIIDRLMTKLKAFAKSKGVVVAVICHLKNPEKGKPHEEGRPV 480
Query: 642 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNR 700
+ D+ GS D I + RN+ + D V VR ++ + G G A +L ++R
Sbjct: 481 TITDLRGSGALRQLSDTIIALERNQQGD----DPNMVRVRILKCRFTGETGVACYLKFDR 536
Query: 701 VTG 703
TG
Sbjct: 537 QTG 539
>gi|118399623|ref|XP_001032136.1| Toprim domain containing protein [Tetrahymena thermophila]
gi|89286474|gb|EAR84473.1| Toprim domain containing protein [Tetrahymena thermophila SB210]
Length = 1088
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 105/468 (22%), Positives = 208/468 (44%), Gaps = 80/468 (17%)
Query: 261 KLVNCKYRDF---NKKFWQEK--DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFL 314
KL+ CK R NKK+ + K ++ +GL+ + + +++I EGE D +++ +A L
Sbjct: 312 KLIKCKIRGIGSENKKYMRVKPSGSKSGIFGLNTVPQNAKELVITEGEYDAMAVNQATGL 371
Query: 315 NCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEEL 374
VS+P+GA N+P E + C L++ +I L D D G+ ++L
Sbjct: 372 PAVSLPNGAS------NLPLE--------VIEC---LEKIEKIYLWLDNDEVGRNNRQKL 414
Query: 375 ARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF 434
A ++G R + V + KDAN++L +K + E+A + P + F D
Sbjct: 415 AEKLGVHRTYIVNTLGE------KDANDILRQDPSRIIKYIQESATI-PDQNILMFSDLK 467
Query: 435 DEIDAYYHRTSGDEFGISTGWRALN-ELYN-----VLPGELTIVTGVPNSGKSEWIDAL- 487
D + HR +F S G+R+ E +N + GE+T++TG SGK+ ++ L
Sbjct: 468 DLV---LHRLL--KFEHSQGYRSRRFEFFNETIKGLRRGEMTVLTGPTGSGKTTFLSQLS 522
Query: 488 --ICNINEHAGW-----KFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540
C W K + + ++ + L + H K P++ A+R
Sbjct: 523 LDFCTQQVPTLWGSFEIKNEVLATNMIMQMSGQDLFKNHNKFPYW-------AQR----- 570
Query: 541 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
F+ + N + ++ ++ + ++ ++ ++ +VID L +
Sbjct: 571 FDMIPMYFMNFY--------GSTNLDQIISTIEYSIYKYDIQHVVIDNLQFLLGTQAKGF 622
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGI 660
++ + + + ++ A H+ V HP+++ E N+ + GSA + DN +
Sbjct: 623 SKFDLQERAIEAFRQLATKKDIHLTLVIHPKKVDE--NEDLNISSVFGSAKATQEADN-V 679
Query: 661 VIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708
+I +NRD RV + ++K N+ G IG+ + +++ + ++
Sbjct: 680 IIMQNRDKY-----RV-IDIKK--NRFNGDIGKKAIIFDKSNKNFYEM 719
>gi|171912822|ref|ZP_02928292.1| hypothetical protein VspiD_16620 [Verrucomicrobium spinosum DSM
4136]
Length = 630
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/448 (22%), Positives = 185/448 (41%), Gaps = 83/448 (18%)
Query: 251 VIAFP-YWRNGKLVNCKYRDF----------NKKFWQEKDTEKVFYGLDDIEGES----D 295
+ FP + +G LVN YR K+ WQ+ +G + +
Sbjct: 189 ALVFPCHAPDGTLVNRSYRTVPGPGESGLGARKRVWQDAGCAPSLFGWQALPKSAWEKRT 248
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
+++ EG++D ++ + G + +SVP+G ++ + W+ L+
Sbjct: 249 VLLCEGQIDAMTWTQWG-VPALSVPNGTGAAW-------------IDHEWD---QLELFD 291
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEV 415
I L+ D D G A + +R+GR RC V+ P K DANE L+ G +
Sbjct: 292 HIYLSFDMDGAGAENANRVMQRLGRHRCLLVKLPHK-------DANECLLE---GCTADD 341
Query: 416 VEN--AELYP------IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG 467
E+ A+ P ++G + E++ + D ++ W ++ + P
Sbjct: 342 AEHWIAQARPPQIHKLLLGQELHQRLMSELEPKPEPFTLDFLRVA--WP--HQGFYFRPH 397
Query: 468 ELTIVTGVPNSGKSEWIDALICNINE---HAGWKFVLCSMENKVREHARKLLEKHIKKPF 524
ELT+ TG GKS +++ + N+ H G + SME + R+L + ++P
Sbjct: 398 ELTVWTGAYGQGKSTFLNFVALNLLSQLSHTG--VFMASMEMRAESTLRRLTTTYFQEPA 455
Query: 525 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGL 584
+N MT E + ++ I S +L++ + RHGV+
Sbjct: 456 TPSNA------MTFLEKFGTRLVFADVVGYI--------SQDLLLEMMMFSFQRHGVQHF 501
Query: 585 VIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN 642
++D +D E E+ Q + ++ FA+ H+ VAHPR+ + G+ +
Sbjct: 502 IVDSLMRVDG------LEEEFAEQGRFMNRLQEFAKETGAHIHLVAHPRKSPS--GQRQD 553
Query: 643 LYDISGSAHFINKCDNGIVIHRNRDPEA 670
+I GS+ N DN + I RN + +A
Sbjct: 554 RLEIKGSSLIANNADNIVAISRNPEKDA 581
>gi|290995598|ref|XP_002680370.1| predicted protein [Naegleria gruberi]
gi|284093990|gb|EFC47626.1| predicted protein [Naegleria gruberi]
Length = 813
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 105/431 (24%), Positives = 180/431 (41%), Gaps = 68/431 (15%)
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
III EGE D +++ + + VS+P+G +++P + +L+
Sbjct: 406 IIITEGEFDAMAVYQKTGIPAVSLPNGC------RSLPVD-----------VVQWLEDFD 448
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF------------KDANEV 403
+I L D D PGQ AE ++++G RC+ V K VD + KDANE
Sbjct: 449 KIYLWMDDDVPGQQGAELFSKKLGVGRCYIVHSNYKEVVDEYGDPIEQTNEKKIKDANEA 508
Query: 404 LMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA-----L 458
L L ++E A + F + ++ +R D+ + G ++ L
Sbjct: 509 L--LAGLDFHRLIEEAAPIQHERILTFNTFKQQV----YRELFDKSEVVNGVQSHFFPGL 562
Query: 459 NE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 517
N+ L GELTI+TG GK+ + L + ++ + S E +R H +L++
Sbjct: 563 NKILKGHRRGELTIITGATGIGKTTVLSQLSLDYCKYGNVPTLWGSFE--IRNH--RLIK 618
Query: 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFS---LIRCENDSLPSIKWVLDLAKA 574
K + + +A + + EE ++ +S FS + I +LD
Sbjct: 619 KMMCQL--------AARQYSPEELKRDFEIISEQFSELPMYFLNFYGSTDIDELLDAMDY 670
Query: 575 AVLRHGVRGLVIDPYNELDHQRPVSQTET-EYVSQMLTMVKRFAQHHACHVWFVAHPRQL 633
AV + V +VID + S T E + + +++FA + HV V HP+++
Sbjct: 671 AVYVYDVAHIVIDNLQFMMSTSDASYTNRFELQDKAIEKLRKFATTRSVHVTLVVHPKKI 730
Query: 634 HNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGE 693
E + + GSA + DN I+I RN+ +QV +N+ GT+G
Sbjct: 731 DE--KEQLQISSVFGSAKATQEADNIIMIQRNKH-----YKYLQV----KKNRFDGTLGI 779
Query: 694 AFLSYNRVTGE 704
+ R GE
Sbjct: 780 VPYRFERNRGE 790
>gi|170783639|ref|YP_001648921.1| putative replication protein P [Enterobacteria phage Min27]
gi|163955733|gb|ABY49883.1| putative replication protein P [Enterobacteria phage Min27]
Length = 860
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 137/312 (43%), Gaps = 53/312 (16%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+ R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIVSRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKK---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKA 372
Query: 482 EWIDALICNINE 493
C +NE
Sbjct: 373 -------CPLNE 377
>gi|420344960|ref|ZP_14846408.1| putative replication protein P [Shigella boydii 965-58]
gi|391277769|gb|EIQ36499.1| putative replication protein P [Shigella boydii 965-58]
Length = 968
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 127/281 (45%), Gaps = 42/281 (14%)
Query: 225 YFAERLISAETLRRNRVMQKR--HGHEVV--IAFPYWRNGKLVNCKY-----RDFNKKFW 275
Y R IS E ++R V+ + +G + + PY R+G+L+ K D K
Sbjct: 127 YLQSRGISPEVVKRYEVVSGKVWNGERELDALVLPYKRDGELLQVKRISTERPDGKKVIM 186
Query: 276 QEKDTEKVFYGLDDIE-GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPS 334
E D E +G ++ G +++ EGE+D +S + G ++ +SVP G ++ +
Sbjct: 187 AEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYG-ISALSVPFGGGKGAKQQWIEF 245
Query: 335 EEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV 394
E + L + I ++ D D G+ A E+A R+G RC V P
Sbjct: 246 EYHN------------LDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTLP----- 288
Query: 395 DHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGIS 452
+KD NE LM + + + + A + L++ R+++ D I+A+Y S ++ +
Sbjct: 289 --YKDINECLMNGVTEDEIWQYIGTASYFDPEELYSAREFYQDTINAFY---SKQQYLFN 343
Query: 453 TGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINE 493
W +L + + ELT+V GV GK+ C +NE
Sbjct: 344 PPWESLADKFQFREAELTLVNGVNGHGKA-------CPLNE 377
>gi|110806565|ref|YP_690085.1| bacteriophage protein [Shigella flexneri 5 str. 8401]
gi|424838955|ref|ZP_18263592.1| putative bacteriophage protein [Shigella flexneri 5a str. M90T]
gi|110616113|gb|ABF04780.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401]
gi|383468007|gb|EID63028.1| putative bacteriophage protein [Shigella flexneri 5a str. M90T]
Length = 968
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 137/312 (43%), Gaps = 53/312 (16%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+ R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIVSRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGK---QQYLFNPPWESLADKFQFREAELTLVNGVNGHGKA 372
Query: 482 EWIDALICNINE 493
C +NE
Sbjct: 373 -------CPLNE 377
>gi|298713554|emb|CBJ27082.1| mitochondrial helicase twinkle [Ectocarpus siliculosus]
Length = 634
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 107/456 (23%), Positives = 192/456 (42%), Gaps = 64/456 (14%)
Query: 263 VNCKYRDFNKKFWQEKDTEKVFYGLDDI----EGESDIIIVEGEMDKLSMEEAGFLNCVS 318
V K R K WQ D +G+ + +G +++++ EGE D +++ +A VS
Sbjct: 210 VRVKARAVRNKQWQRLDPAGGRWGIFGLHTVPDGATEVVLTEGEYDAMAVYQATGKPAVS 269
Query: 319 VPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV 378
+P+GA SS+ + +P E+ K YLW D D GQA ++ ++
Sbjct: 270 LPNGA-SSLPLEVLPLLERFNKI-YLW---------------MDHDGAGQAGVDKFVLKL 312
Query: 379 GRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEID 438
G RC VR P ++D + KDANE L L L++ ++ A + F+D ++
Sbjct: 313 GTRRCLVVR-PLEDDPNPPKDANEAL--LAGRNLQDFLDGASSTKHDDIQTFQDLRQKV- 368
Query: 439 AYYHRTSGDEFGISTGWRALNELYNVLP----GELTIVTGVPNSGKSEWIDALICNINEH 494
H TG ++ ++ GELT++TG SGK+ + L ++
Sbjct: 369 --IHELQNPLEYSGTGLQSFPRFTRIIKGLRRGELTVLTGPTGSGKTTILSQLSLDLAA- 425
Query: 495 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE--RMTVEEFEQGKAWLSNTF 552
G + S E K +K+L + +P A+ GS + R + F+ +
Sbjct: 426 GGLSTLWGSFEIKNTRLMQKMLHQFAGRPV--ADLAGSPDSLRAVADRFQ------ALPL 477
Query: 553 SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL---------DHQRPVSQTET 603
S +R + ++ V+D AV + V+ +++D + +RP +
Sbjct: 478 SFLRFHGGT--NVDEVIDAMDYAVYANDVQHIILDNLQFMLTRNSREGHGGKRPGPFDKF 535
Query: 604 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 663
+ L ++FA H H+ V HPR+ G I GSA + D +++
Sbjct: 536 DAQDLALDKFRKFATEHNVHITLVIHPRKEDE--GYKLTTSSIFGSAKATQEADLVVILQ 593
Query: 664 RNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYN 699
+ ++ + V+K N+ G +GE L ++
Sbjct: 594 NQKGNKS-------LEVKK--NRFDGDLGEVHLVFD 620
>gi|415855881|ref|ZP_11531005.1| gp61 [Shigella flexneri 2a str. 2457T]
gi|313649566|gb|EFS13995.1| gp61 [Shigella flexneri 2a str. 2457T]
Length = 554
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 137/312 (43%), Gaps = 53/312 (16%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 39 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 90
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 91 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRVVVLCEGEI 150
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 151 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 197
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+ R+G RC V P +KD NE LM + + + + A +
Sbjct: 198 DDVGREAAREIVSRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 250
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 251 DPEELYSAREFYQDTINAFYGK---QQYLFNPPWESLADKFQFREAELTLVNGVHGHGKA 307
Query: 482 EWIDALICNINE 493
C +NE
Sbjct: 308 -------CPLNE 312
>gi|24112100|ref|NP_706610.1| bacteriophage protein [Shigella flexneri 2a str. 301]
gi|30062219|ref|NP_836390.1| bacteriophage protein [Shigella flexneri 2a str. 2457T]
gi|384542280|ref|YP_005726342.1| putative bacteriophage protein [Shigella flexneri 2002017]
gi|417727131|ref|ZP_12375874.1| hypothetical protein SFK671_0806 [Shigella flexneri K-671]
gi|24050930|gb|AAN42317.1| putative bacteriophage protein [Shigella flexneri 2a str. 301]
gi|30040464|gb|AAP16196.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T]
gi|281600065|gb|ADA73049.1| putative bacteriophage protein [Shigella flexneri 2002017]
gi|332763407|gb|EGJ93647.1| hypothetical protein SFK671_0806 [Shigella flexneri K-671]
Length = 619
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 140/312 (44%), Gaps = 53/312 (16%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRVVVLCEGEI 215
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G +++Q +++Y L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKG-------AKQQWIEFEY-----HNLDRFEEIFISMDV 262
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+ R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIVSRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVHGHGKA 372
Query: 482 EWIDALICNINE 493
C +NE
Sbjct: 373 -------CPLNE 377
>gi|317059597|ref|ZP_07924082.1| predicted protein [Fusobacterium sp. 3_1_5R]
gi|313685273|gb|EFS22108.1| predicted protein [Fusobacterium sp. 3_1_5R]
Length = 769
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 136/306 (44%), Gaps = 45/306 (14%)
Query: 144 CPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMK 203
CP C S+ S+ L+ + + C G GS L D + ++ K K
Sbjct: 16 CPICKKESSDNPHFSINLE----TKQYYCHST--GRGGSIEELEDFDVDLENIS-IKKEK 68
Query: 204 TIREITEDSLEL----EPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRN 259
I+ DS+ + LG + Y R IS + L R R G + P
Sbjct: 69 KIQAANFDSIMKSRADKHLGEDWLTYLKGRGISEKGLGR----LVRLGRNNTMMIPVTDG 124
Query: 260 GKLVNCKYRDFNKKFWQEKDTEKVFY-GLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVS 318
+V+ KYR +KK EK ++ + +I+ +S +IIVEGE+D LS EAG+ N VS
Sbjct: 125 EHVVSIKYRTMDKKMSSEKGSQSNYLVNWQNIKNKSYLIIVEGEIDLLSAIEAGYDNVVS 184
Query: 319 VPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA--- 375
+P GA KN+ + E K +++ S+I +A D D PG+ +E+
Sbjct: 185 LPFGA------KNLKAIEHQ---------KTWIESFSKITIAVDNDIPGEECKKEIIEIL 229
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFD 435
RRV + + V + +KD NEVL G A++ +++ A + FR ++
Sbjct: 230 RRV-KNKVHEVNFGT------YKDLNEVLQDKGVEAIEAIIKAASKVEHI----FRPFYK 278
Query: 436 EIDAYY 441
E + YY
Sbjct: 279 EENGYY 284
>gi|417722282|ref|ZP_12371112.1| hypothetical protein SFK304_1434 [Shigella flexneri K-304]
gi|333019692|gb|EGK38967.1| hypothetical protein SFK304_1434 [Shigella flexneri K-304]
Length = 603
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 140/312 (44%), Gaps = 53/312 (16%)
Query: 197 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 251
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 88 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 139
Query: 252 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 303
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 140 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRVVVLCEGEI 199
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +S + G ++ +SVP G +++Q +++Y L + I ++ D
Sbjct: 200 DCMSYAQYG-ISALSVPFGGGKG-------AKQQWIEFEY-----HNLDRFEEIFISMDV 246
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+ R+G RC V P +KD NE LM + + + + A +
Sbjct: 247 DDVGREAAREIVSRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 299
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 300 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVHGHGKA 356
Query: 482 EWIDALICNINE 493
C +NE
Sbjct: 357 -------CPLNE 361
>gi|148724467|ref|YP_001285433.1| primase/helicase [Cyanophage Syn5]
gi|145588112|gb|ABP87931.1| primase/helicase [Synechococcus phage Syn5]
Length = 534
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 132/576 (22%), Positives = 236/576 (40%), Gaps = 93/576 (16%)
Query: 144 CPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQ----SSLKKF 199
CP+C D+ +++ D G+ CF +G+ L + S + F
Sbjct: 13 CPECPSSDA----FAIYSDGSGY-----CFSCGHSTRGTGETLTPPSSSPRVSITYSGDF 63
Query: 200 SKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRN 259
S +++ R+ITED+ + F R+ + +R FPY+ +
Sbjct: 64 SGIRS-RKITEDTCK----------KFNVRVDAGPVIR----------------FPYYSS 96
Query: 260 -GKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEA--GFLN 315
G++ + K R K+F W K+ +K +G I+I EGE D L++ +A +
Sbjct: 97 AGRVCSYKERPQAKEFHWVGKNEDKQLFGQQLFGKGKSIVITEGEFDALAVWQARPNWPV 156
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
C SVP+GA + KK++ S + D YL + IIL D D G A AEE
Sbjct: 157 C-SVPNGAQGA--KKSL-SLQLD-----------YLLKFDEIILMFDNDEAGIAAAEECV 201
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFD 435
+ ++ + + +KDA E L A+++ V N Y + + R+ FD
Sbjct: 202 QLFPADKVFLA------PLSQYKDACEALQAGDTDAIRQAVWNKRTYSPKSIIDGRELFD 255
Query: 436 EIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEH 494
+ H D + LN++ L GEL +T +GKS + ++
Sbjct: 256 LVSTPLHGRDAD-----YPYSDLNKVTGGLRLGELVTITAGSGTGKSTLCGEIAVSLISQ 310
Query: 495 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE--RMTVEEFEQGKAWLSNTF 552
G ++E V+ +L+ KP N + R + G+ +L + F
Sbjct: 311 -GESVGYIALEESVKRTGLRLMTVEANKPLHLDNKINETDFKRAFDQTLGSGRVYLRDGF 369
Query: 553 SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM 612
+ + +L+ + V + V+ +V+D + L S E + + +T
Sbjct: 370 GSVDPDQ--------LLNDVRYLVKTNEVKWIVLDHLSILLSGNE-SNDERKMIDITMTK 420
Query: 613 VKRFAQHHACHVWFVAHPRQLH----NWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP 668
++ F + + ++H R++ + G +L + GS H I + + +V+ RD
Sbjct: 421 LRSFVEETGIGMILISHLRRVQGDKGHEDGASVSLGQLRGS-HAIAQLSD-LVVALQRDI 478
Query: 669 EAGPIDRVQVCVRKVRNKVVGTIGEAF-LSYNRVTG 703
AG +R ++ V ++N+ G G A LSY TG
Sbjct: 479 SAGD-NRSELVV--LKNRFNGQTGPAGKLSYGLETG 511
>gi|83308132|emb|CAJ29365.1| gp4A protein [Enterobacteria phage K1F]
Length = 566
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 138/587 (23%), Positives = 220/587 (37%), Gaps = 89/587 (15%)
Query: 144 CPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMK 203
CP C D+ + DG + C WK L + K+ S +
Sbjct: 18 CPDCGSSDANGVY------SDGHQFCFAC-DPSVAWKKGDMELTEGYTPSGGRKQVSNLL 70
Query: 204 TIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVV-IAFPYWRNGKL 262
T E++ PL R +S E ++ G ++V +A Y R+G
Sbjct: 71 TF---GENAGRYVPL--------PARSLSMEICKKYSYWVGNMGGKMVQVADYYDRSGTK 119
Query: 263 VNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEA--GFLNCVSV 319
V K RD K F + + +G G I+I EGE+D LS+ + G VS+
Sbjct: 120 VGQKVRDAEKNFTAIGSVKSDMLFGSQLWNGGKKIVITEGEIDALSVAQVQDGKYPVVSL 179
Query: 320 PDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVG 379
P GA S+ E YL Q IIL D D PG+ E+ A +
Sbjct: 180 PLGAKSAKKAMAANLE--------------YLDQFEEIILMFDMDEPGRQAIEDAAPVLP 225
Query: 380 RERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDA 439
R K ++ +KDAN L A+ + + NA+ + G+ + D
Sbjct: 226 AGRV------KVAFINGYKDANAALQAKDFKAITDAIWNAKPFVPAGVVSAASLKDRTRE 279
Query: 440 YYHR--TSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGW 497
+ T G F T A+ GEL +VT GKS ++ L+ G
Sbjct: 280 AMLKAETEGLMFSSCTTLNAMT--LGARAGELIMVTSGSGMGKSTFVRQLLLEWG-RGGK 336
Query: 498 KFVLCSMENKVREHARKLL----------EKHIKKPFFEANYGGSAERMTVEEFEQGKAW 547
+ + +E V E + L+ K +K+ E G + + F K
Sbjct: 337 RVGMAMLEEAVEETVQDLMGLDNNVRLRQSKELKQAILE---DGRFDEWYDKLFGDDKFH 393
Query: 548 LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV------SQT 601
L ++F+ E D+L AK A + G+ VI LDH V +
Sbjct: 394 LYDSFA--ESEEDTL--------FAKLAYMVDGLDCDVI----LLDHISIVVSGMEDNSD 439
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPPNLYDISGSAHFINKCD 657
E + + +++T +K+FA+ V + H + G P ++ D+ GS D
Sbjct: 440 ERKTIDRIMTRLKKFAKTKGVVVVVICHLKNPEKGKSHEEGRPVSITDLRGSGALRQLSD 499
Query: 658 NGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 703
+ + RN+ + + V +R ++ + G G A L YN+ TG
Sbjct: 500 TILALERNQQGDTPNV----VQLRLLKCRFTGDTGVAGHLEYNKTTG 542
>gi|77118185|ref|YP_338107.1| primase/helicase [Enterobacteria phage K1F]
gi|72527929|gb|AAZ72981.1| primase/helicase [Enterobacteria phage K1F]
Length = 586
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 138/587 (23%), Positives = 220/587 (37%), Gaps = 89/587 (15%)
Query: 144 CPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMK 203
CP C D+ + DG + C WK L + K+ S +
Sbjct: 18 CPDCGSSDANGVY------SDGHQFCFAC-DPSVAWKKGDMELTEGYTPSGGRKQVSNLL 70
Query: 204 TIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVV-IAFPYWRNGKL 262
T E++ PL R +S E ++ G ++V +A Y R+G
Sbjct: 71 TF---GENAGRYVPL--------PARSLSMEICKKYSYWVGNMGGKMVQVADYYDRSGTK 119
Query: 263 VNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEA--GFLNCVSV 319
V K RD K F + + +G G I+I EGE+D LS+ + G VS+
Sbjct: 120 VGQKVRDAEKNFTAIGSVKSDMLFGSQLWNGGKKIVITEGEIDALSVAQVQDGKYPVVSL 179
Query: 320 PDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVG 379
P GA S+ E YL Q IIL D D PG+ E+ A +
Sbjct: 180 PLGAKSAKKAMAANLE--------------YLDQFEEIILMFDMDEPGRQAIEDAAPVLP 225
Query: 380 RERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDA 439
R K ++ +KDAN L A+ + + NA+ + G+ + D
Sbjct: 226 AGRV------KVAFINGYKDANAALQAKDFKAITDAIWNAKPFVPAGVVSAASLKDRTRE 279
Query: 440 YYHR--TSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGW 497
+ T G F T A+ GEL +VT GKS ++ L+ G
Sbjct: 280 AMLKAETEGLMFSSCTTLNAMT--LGARAGELIMVTSGSGMGKSTFVRQLLLEWG-RGGK 336
Query: 498 KFVLCSMENKVREHARKLL----------EKHIKKPFFEANYGGSAERMTVEEFEQGKAW 547
+ + +E V E + L+ K +K+ E G + + F K
Sbjct: 337 RVGMAMLEEAVEETVQDLMGLDNNVRLRQSKELKQAILE---DGRFDEWYDKLFGDDKFH 393
Query: 548 LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV------SQT 601
L ++F+ E D+L AK A + G+ VI LDH V +
Sbjct: 394 LYDSFA--ESEEDTL--------FAKLAYMVDGLDCDVI----LLDHISIVVSGMEDNSD 439
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPPNLYDISGSAHFINKCD 657
E + + +++T +K+FA+ V + H + G P ++ D+ GS D
Sbjct: 440 ERKTIDRIMTRLKKFAKTKGVVVVVICHLKNPEKGKSHEEGRPVSITDLRGSGALRQLSD 499
Query: 658 NGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 703
+ + RN+ + + V +R ++ + G G A L YN+ TG
Sbjct: 500 TILALERNQQGDTPNV----VQLRLLKCRFTGDTGVAGHLEYNKTTG 542
>gi|37956818|gb|AAP34085.1| gene 4A [Enterobacteria phage T7]
gi|37956872|gb|AAP34138.1| gene 4A [Enterobacteria phage T7]
Length = 566
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 122/507 (24%), Positives = 199/507 (39%), Gaps = 76/507 (14%)
Query: 226 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-V 283
R IS ET ++ + K G +A +NG +V+ K RD +K F +
Sbjct: 81 LTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKIRDKDKNFKTTGSHKSDA 140
Query: 284 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 343
+G G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 141 LFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYE------ 194
Query: 344 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 403
Y Q +IIL D D G+ EE A+ + + P KDANE
Sbjct: 195 ------YFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANEC 241
Query: 404 LMYLGPGALKEVVENAELY---PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALN 459
+ + E V NA + ++ + R+ E H +S + G+ +G +N
Sbjct: 242 HLNGHDREIMEQVWNAGPWIPDGVVSALSLRERIRE-----HLSSEESVGLLFSGCTGIN 296
Query: 460 E-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 518
+ GE+ +VT GKS ++ G K L +E V E A L+
Sbjct: 297 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGL 356
Query: 519 HIKKPFFEANYGGSAERMTVE--EFEQGKAWLSNTF---------SLIRCENDSLPSIKW 567
H + +++ S +R +E +F+Q W F S E D L
Sbjct: 357 HNRVRLRQSD---SLKREIIENGKFDQ---WFDELFGNDTFHLYDSFAEAETDRL----- 405
Query: 568 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY-----VSQMLTMVKRFAQHHAC 622
LAK A +R G+ VI LDH + E+ + ++T +K FA+
Sbjct: 406 ---LAKLAYMRSGLGCDVI----ILDHISIIVSASGEFDERKMIDNLMTKLKGFAKSTGV 458
Query: 623 HVWFVAHPR-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 677
+ + H + + H G P ++ D+ GS D I + RN+ + +
Sbjct: 459 VLVVICHLKNPDKGKAHE-EGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL---- 513
Query: 678 VCVRKVRNKVVGTIGEA-FLSYNRVTG 703
V VR ++ + G G A ++ YN+ TG
Sbjct: 514 VLVRILKCRFTGDTGIAGYMKYNKETG 540
>gi|194473820|ref|YP_002048644.1| DNA primase/helicase [Morganella phage MmP1]
gi|194307041|gb|ACF42023.1| DNA primase/helicase [Morganella phage MmP1]
Length = 575
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 117/485 (24%), Positives = 192/485 (39%), Gaps = 68/485 (14%)
Query: 244 KRHGHEVVIAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGE 302
K +G V IA +NG++++ K R NK+F + K Y G I+I EGE
Sbjct: 107 KLNGETVQIANYRDQNGEIISQKIRAANKEFATRGKHKSDSLYLKHLWSGGKRIVITEGE 166
Query: 303 MDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATD 362
+D LS+ + V G+ + V+KK + + + YL Q IIL D
Sbjct: 167 IDALSVMQVQGGKWPVVSLGSGAQVAKKTLSANYE------------YLDQFEEIILMFD 214
Query: 363 GDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422
D G+ EE A + + P +KDANE L+ A+ + NA +
Sbjct: 215 MDEAGRKAVEEAAPVLPAGKVKVAVLP-------YKDANECLVNGDTEAIINQIFNANPW 267
Query: 423 PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGK 480
G+ + + + H + + G+ G LNE GE+ +VT GK
Sbjct: 268 VPDGVVSAASMKERVQQ--HLETAESVGLLFDGCEGLNERTLGTRGGEVVMVTSGSGMGK 325
Query: 481 SEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKH-----------IKKPFFEANY 529
S ++ G + + +E E +L H K+ F +
Sbjct: 326 STFVRQQALAWGNKHGKRVGMAMLEESAEETVEDILGLHCGFRLRQSPLEFKREFVTS-- 383
Query: 530 GGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPY 589
GS + E F + L ++F+ E + L LAK A +R G+ VI
Sbjct: 384 -GSYDLAFSEVFGSDRFHLYDSFA--EAETERL--------LAKLAYMRMGLDCDVII-- 430
Query: 590 NELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGE 639
LDH V E + + +++T +K FA+ + V H + + H G
Sbjct: 431 --LDHISIVVSASEESDERKMIDRLMTKLKSFAKSSGVILVVVCHLKNPTKGKAHEE-GR 487
Query: 640 PPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSY 698
P ++ D+ GS D I + RN+ + + V +R ++ + G G A ++ Y
Sbjct: 488 PVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLIRLLKCRFTGDTGVAGYMEY 543
Query: 699 NRVTG 703
N+ TG
Sbjct: 544 NKQTG 548
>gi|83308133|emb|CAJ29366.1| gp4B protein [Enterobacteria phage K1F]
Length = 516
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 119/483 (24%), Positives = 188/483 (38%), Gaps = 70/483 (14%)
Query: 247 GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDK 305
G V +A Y R+G V K RD K F + + +G G I+I EGE+D
Sbjct: 54 GKMVQVADYYDRSGTKVGQKVRDAEKNFTAIGSVKSDMLFGSQLWNGGKKIVITEGEIDA 113
Query: 306 LSMEEA--GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
LS+ + G VS+P GA S+ E YL Q IIL D
Sbjct: 114 LSVAQVQDGKYPVVSLPLGAKSAKKAMAANLE--------------YLDQFEEIILMFDM 159
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYP 423
D PG+ E+ A + R K ++ +KDAN L A+ + + NA+ +
Sbjct: 160 DEPGRQAIEDAAPVLPAGRV------KVAFINGYKDANAALQAKDFKAITDAIWNAKPFV 213
Query: 424 IMGLFNFRDYFDEIDAYYHR--TSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
G+ + D + T G F T A+ GEL +VT GKS
Sbjct: 214 PAGVVSAASLKDRTREAMLKAETEGLMFSSCTTLNAMT--LGARAGELIMVTSGSGMGKS 271
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLL----------EKHIKKPFFEANYGG 531
++ L+ G + + +E V E + L+ K +K+ E G
Sbjct: 272 TFVRQLLLEWG-RGGKRVGMAMLEEAVEETVQDLMGLDNNVRLRQSKELKQAILE---DG 327
Query: 532 SAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 591
+ + F K L ++F+ E D+L AK A + G+ VI
Sbjct: 328 RFDEWYDKLFGDDKFHLYDSFA--ESEEDTL--------FAKLAYMVDGLDCDVI----L 373
Query: 592 LDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 641
LDH V + E + + +++T +K+FA+ V + H + G P
Sbjct: 374 LDHISIVVSGMEDNSDERKTIDRIMTRLKKFAKTKGVVVVVICHLKNPEKGKSHEEGRPV 433
Query: 642 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNR 700
++ D+ GS D + + RN+ + + V +R ++ + G G A L YN+
Sbjct: 434 SITDLRGSGALRQLSDTILALERNQQGDTPNV----VQLRLLKCRFTGDTGVAGHLEYNK 489
Query: 701 VTG 703
TG
Sbjct: 490 TTG 492
>gi|37956820|gb|AAP34087.1| gene 4B [Enterobacteria phage T7]
gi|37956874|gb|AAP34140.1| gene 4B [Enterobacteria phage T7]
Length = 503
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 114/474 (24%), Positives = 187/474 (39%), Gaps = 75/474 (15%)
Query: 258 RNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 316
+NG +V+ K RD +K F + +G G I++ EGE+D L++ E
Sbjct: 51 QNGNIVSQKIRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKY 110
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 111 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDEAGRKAVEEAAQ 158
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY---PIMGLFNFRDY 433
+ + P KDANE + + E V NA + ++ + R+
Sbjct: 159 VLPAGKVRVAVLP-------CKDANECHLNGHDREIMEQVWNAGPWIPDGVVSALSLRER 211
Query: 434 FDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNI 491
E H +S + G+ +G +N+ GE+ +VT GKS ++
Sbjct: 212 IRE-----HLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 266
Query: 492 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE--EFEQGKAWLS 549
G K L +E V E A L+ H + +++ S +R +E +F+Q W
Sbjct: 267 GTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSD---SLKREIIENGKFDQ---WFD 320
Query: 550 NTF---------SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
F S E D L LAK A +R G+ VI LDH +
Sbjct: 321 ELFGNDTFHLYDSFAEAETDRL--------LAKLAYMRSGLGCDVI----ILDHISIIVS 368
Query: 601 TETEY-----VSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSA 650
E+ + ++T +K FA+ + + H + + H G P ++ D+ GS
Sbjct: 369 ASGEFDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE-EGRPVSITDLRGSG 427
Query: 651 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 703
D I + RN+ + + V VR ++ + G G A ++ YN+ TG
Sbjct: 428 ALRQLSDTIIALERNQQGDMPNL----VLVRILKCRFTGDTGIAGYMKYNKETG 477
>gi|119637760|ref|YP_918996.1| DNA primase/helicase [Yersinia phage Berlin]
gi|194100483|ref|YP_002003328.1| gp4A [Yersinia phage Yepe2]
gi|119391791|emb|CAJ70664.1| hypothetical protein [Yersinia phage Berlin]
gi|193201216|gb|ACF15697.1| gp4A [Yersinia phage Yepe2]
gi|387941877|gb|AFK13457.1| T7-like phage primase/helicase protein [Yersinia phage YpP-G]
Length = 570
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 131/544 (24%), Positives = 211/544 (38%), Gaps = 73/544 (13%)
Query: 187 VDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRH 246
D R Q+S K+ T + + L A L+ A + + K +
Sbjct: 46 TDETREQASTKRRRSYNTGGDKMSNLLNFGDSDGRYANLKARGLMEAICRKYGYWVAKVN 105
Query: 247 GHEVVIAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDK 305
G + +A Y G LV K RD NK+F + K + +G G I++ EGE+D
Sbjct: 106 GEMLQVANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGEIDC 165
Query: 306 LSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
L++ + G VS+P GA ++ KK + + Y Q IIL D
Sbjct: 166 LTVAQLQEGKYPVVSLPMGAQAA--KKTCSANYE------------YFDQFDEIILMFDM 211
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYP 423
D PG+ EE A + + P KDANE L+ A+ + + NA+ +
Sbjct: 212 DEPGRKAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQPWV 264
Query: 424 IMGLFNFRDYFDEI--DAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGK 480
G+ + D + T+G F TG LN++ GE+ +VT GK
Sbjct: 265 PDGVVSAVSLKDRVREAMVKEETTGLLF---TGQPKLNDMTLGARGGEVIMVTSGSGMGK 321
Query: 481 SEWIDALICNINEHAGWKFVLCSMENKVRE----------HARKLLEKHIKKPFFEANYG 530
S ++ + + G K L +E V E H R +K +K E
Sbjct: 322 STFVRQQMLQWGK-GGAKVGLAMLEEAVEETVQDLMGLNNHVRLRQDKELKMKILED--- 377
Query: 531 GSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 590
G + E F L ++F+ + D L AK A + G+ VI
Sbjct: 378 GRFDEWYGELFNTDMFHLYDSFA--ESQEDRL--------FAKLAYMVDGLDCNVI---- 423
Query: 591 ELDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEP 640
LDH V + E + + +++T +K FA+ V + H + G P
Sbjct: 424 LLDHISIVVSGMEDNSDERKTIDRLMTKLKAFAKTKGVVVVVICHLKNPEKGKAHEEGRP 483
Query: 641 PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYN 699
++ D+ GS D I + RN+ + + V +R ++ + G G A ++YN
Sbjct: 484 VSITDLRGSGSLRQLSDTIIALERNQQGDYPNL----VQLRVLKCRFTGDTGVAGHMAYN 539
Query: 700 RVTG 703
+ TG
Sbjct: 540 KETG 543
>gi|9627447|ref|NP_041975.1| DNA primase/helicase [Enterobacteria phage T7]
gi|130907|sp|P03692.1|PRIM_BPT7 RecName: Full=DNA primase/helicase
gi|15584|emb|CAA24405.1| unnamed protein product [Enterobacteria phage T7]
gi|37956659|gb|AAP33929.1| gene 4A [Enterobacteria phage T7]
gi|265524986|gb|ACY75849.1| DNA primase/helicase [Enterobacteria phage T7]
Length = 566
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 123/507 (24%), Positives = 199/507 (39%), Gaps = 76/507 (14%)
Query: 226 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-V 283
R IS ET ++ + K G +A +NG +V+ K RD +K F +
Sbjct: 81 LTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDA 140
Query: 284 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 343
+G G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 141 LFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYE------ 194
Query: 344 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 403
Y Q +IIL D D G+ EE A+ + + P KDANE
Sbjct: 195 ------YFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANEC 241
Query: 404 LMYLGPGALKEVVENAELY---PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALN 459
+ + E V NA + ++ + R+ E H +S + G+ +G +N
Sbjct: 242 HLNGHDREIMEQVWNAGPWIPDGVVSALSLRERIRE-----HLSSEESVGLLFSGCTGIN 296
Query: 460 E-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 518
+ GE+ +VT GKS ++ G K L +E V E A L+
Sbjct: 297 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGL 356
Query: 519 HIKKPFFEANYGGSAERMTVE--EFEQGKAWLSNTF---------SLIRCENDSLPSIKW 567
H + +++ S +R +E +F+Q W F S E D L
Sbjct: 357 HNRVRLRQSD---SLKREIIENGKFDQ---WFDELFGNDTFHLYDSFAEAETDRL----- 405
Query: 568 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHAC 622
LAK A +R G+ VI LDH V E + + ++T +K FA+
Sbjct: 406 ---LAKLAYMRSGLGCDVI----ILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGV 458
Query: 623 HVWFVAHPR-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 677
+ + H + + H G P ++ D+ GS D I + RN+ + +
Sbjct: 459 VLVVICHLKNPDKGKAHE-EGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL---- 513
Query: 678 VCVRKVRNKVVGTIGEA-FLSYNRVTG 703
V VR ++ + G G A ++ YN+ TG
Sbjct: 514 VLVRILKCRFTGDTGIAGYMEYNKETG 540
>gi|30387470|ref|NP_848279.1| primase/helicase protein [Yersinia phage phiA1122]
gi|30314107|gb|AAP20515.1| primase/helicase protein [Yersinia phage phiA1122]
gi|387941777|gb|AFK13359.1| T7-like phage primase/helicase protein [Yersinia phage YpP-Y]
gi|387941831|gb|AFK13412.1| T7-like phage primase/helicase protein [Yersinia phage YpP-R]
gi|387941928|gb|AFK13507.1| T7-like phage primase/helicase protein [Yersinia phage YpsP-G]
gi|432142762|gb|AGB07340.1| DNA primase/helicase [Yersinia phage R]
Length = 566
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 123/507 (24%), Positives = 199/507 (39%), Gaps = 76/507 (14%)
Query: 226 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-V 283
R IS ET ++ + K G +A +NG +V+ K RD +K F +
Sbjct: 81 LTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDA 140
Query: 284 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 343
+G G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 141 LFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYE------ 194
Query: 344 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 403
Y Q +IIL D D G+ EE A+ + + P KDANE
Sbjct: 195 ------YFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANEC 241
Query: 404 LMYLGPGALKEVVENAELY---PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALN 459
+ + E V NA + ++ + R+ E H +S + G+ +G +N
Sbjct: 242 HLNGHDREIMEQVWNAGPWIPDGVVSALSLRERIRE-----HLSSEESVGLLFSGCTGIN 296
Query: 460 E-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 518
+ GE+ +VT GKS ++ G K L +E V E A L+
Sbjct: 297 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGL 356
Query: 519 HIKKPFFEANYGGSAERMTVE--EFEQGKAWLSNTF---------SLIRCENDSLPSIKW 567
H + +++ S +R +E +F+Q W F S E D L
Sbjct: 357 HNRVRLRQSD---SLKREIIENGKFDQ---WFDELFGNDTFHLYDSFAEAETDRL----- 405
Query: 568 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHAC 622
LAK A +R G+ VI LDH V E + + ++T +K FA+
Sbjct: 406 ---LAKLAYMRSGLGCDVI----ILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGV 458
Query: 623 HVWFVAHPR-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 677
+ + H + + H G P ++ D+ GS D I + RN+ + +
Sbjct: 459 VLVVICHLKNPDKGKAHE-EGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL---- 513
Query: 678 VCVRKVRNKVVGTIGEA-FLSYNRVTG 703
V VR ++ + G G A ++ YN+ TG
Sbjct: 514 VLVRILKCRFTGYTGIAGYMEYNKETG 540
>gi|194100378|ref|YP_002003952.1| gp4A [Enterobacteria phage 13a]
gi|193201425|gb|ACF15902.1| gp4A [Enterobacteria phage 13a]
Length = 564
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 123/507 (24%), Positives = 199/507 (39%), Gaps = 76/507 (14%)
Query: 226 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-V 283
R IS ET ++ + K G +A +NG +V+ K RD +K F +
Sbjct: 79 LTARGISKETCQKAGYWIGKVDGVMYQVADYRDQNGTIVSQKIRDKDKNFKTTGSHKSDA 138
Query: 284 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 343
+G G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 139 LFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYE------ 192
Query: 344 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 403
Y Q +IIL D D G+ EE A+ + + P KDANE
Sbjct: 193 ------YFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANEC 239
Query: 404 LMYLGPGALKEVVENAELY---PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALN 459
+ + E V NA + ++ + R+ E H +S + G+ +G +N
Sbjct: 240 HLNGHDREIMEQVWNAGPWIPDGVVSALSLRERIRE-----HLSSEESVGLLFSGCTGIN 294
Query: 460 E-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 518
+ GE+ +VT GKS ++ G K L +E V E A L+
Sbjct: 295 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGL 354
Query: 519 HIKKPFFEANYGGSAERMTVE--EFEQGKAWLSNTF---------SLIRCENDSLPSIKW 567
H + +++ S +R +E +F+Q W F S E D L
Sbjct: 355 HNRVRLRQSD---SLKREIIENGKFDQ---WFDELFGNDTFHLYDSFAEAETDRL----- 403
Query: 568 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHAC 622
LAK A +R G+ VI LDH V E + + ++T +K FA+
Sbjct: 404 ---LAKLAYMRSGLGCDVI----ILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGV 456
Query: 623 HVWFVAHPR-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 677
+ + H + + H G P ++ D+ GS D I + RN+ + +
Sbjct: 457 VLVVICHLKNPDKGKAHE-EGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL---- 511
Query: 678 VCVRKVRNKVVGTIGEA-FLSYNRVTG 703
V VR ++ + G G A ++ YN+ TG
Sbjct: 512 VLVRILKCRFTGDTGIAGYMEYNKETG 538
>gi|29366716|ref|NP_813761.1| putative primase/helicase [Pseudomonas phage gh-1]
gi|29243575|gb|AAO73154.1|AF493143_15 putative primase/helicase [Pseudomonas phage gh-1]
Length = 562
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 114/485 (23%), Positives = 193/485 (39%), Gaps = 66/485 (13%)
Query: 236 LRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGES 294
++R VM + +A Y G L + K RD K+F+ +K +G G
Sbjct: 98 IKREMVMAQ-------VANYYDAQGNLTSQKVRDATKEFFTAGAHDKDALFGRQLWSGGR 150
Query: 295 DIIIVEGEMDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLK 352
I++ EGE+D L++ + G VS+ G S +KK S + Y
Sbjct: 151 KIVVTEGEIDCLTVAQLQGGKYPVVSIGHG--SKAAKKTCASNYE------------YFD 196
Query: 353 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGAL 412
IIL D D G+A ++E A + + P FKDANE + A+
Sbjct: 197 TFDEIILMFDMDDAGRAASQEAAEVLPPGKVKIAVLP-------FKDANECVKQGNAKAV 249
Query: 413 KEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP----GE 468
+ + NA+ + G+ + + + R + S A +EL + GE
Sbjct: 250 TDAIWNAQPFVPDGVVSAK-------SLKARLKEKKVIPSLPLVAPHELKKMTKDCRGGE 302
Query: 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN 528
+ +VT SGKS ++ + N+ + + +E V E + ++ HI +
Sbjct: 303 VILVTSGSGSGKSTFVRQNVYNLFHNESIPCGVAMLEEAVEETVQDIVGLHIGARVRQNP 362
Query: 529 YGGSAE---RMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA--VLRHGVRG 583
+ E R E FE K +L + F+ D L LAK A V G R
Sbjct: 363 DETTEEVFDRAFDEIFESDKLFLYDAFA--EAAEDRL--------LAKLAYMVEAEGCRV 412
Query: 584 LVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GE 639
+V+D + + Q E + + +++T +K FA+ V+ + H + G
Sbjct: 413 IVLDHISIVVSAMDGDQDERKTIDRLMTKIKAFAKTKNVAVFVICHLKNPDKGKPHEEGR 472
Query: 640 PPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSY 698
P + D+ GS D I + RN + G + + R ++ + G G A F+ Y
Sbjct: 473 PIVVTDLRGSGGLRQLSDTIIALERN---QQGAFPHI-ILFRVLKCRFTGETGVAGFMRY 528
Query: 699 NRVTG 703
++ TG
Sbjct: 529 DKATG 533
>gi|9627449|ref|NP_041977.1| helicase [Enterobacteria phage T7]
gi|15586|emb|CAA24407.1| unnamed protein product [Enterobacteria phage T7]
gi|37956661|gb|AAP33931.1| gene 4B [Enterobacteria phage T7]
Length = 503
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 115/474 (24%), Positives = 187/474 (39%), Gaps = 75/474 (15%)
Query: 258 RNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 316
+NG +V+ K RD +K F + +G G I++ EGE+D L++ E
Sbjct: 51 QNGNIVSQKVRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKY 110
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 111 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDEAGRKAVEEAAQ 158
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY---PIMGLFNFRDY 433
+ + P KDANE + + E V NA + ++ + R+
Sbjct: 159 VLPAGKVRVAVLP-------CKDANECHLNGHDREIMEQVWNAGPWIPDGVVSALSLRER 211
Query: 434 FDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNI 491
E H +S + G+ +G +N+ GE+ +VT GKS ++
Sbjct: 212 IRE-----HLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 266
Query: 492 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE--EFEQGKAWLS 549
G K L +E V E A L+ H + +++ S +R +E +F+Q W
Sbjct: 267 GTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSD---SLKREIIENGKFDQ---WFD 320
Query: 550 NTF---------SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
F S E D L LAK A +R G+ VI LDH V
Sbjct: 321 ELFGNDTFHLYDSFAEAETDRL--------LAKLAYMRSGLGCDVI----ILDHISIVVS 368
Query: 601 T-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSA 650
E + + ++T +K FA+ + + H + + H G P ++ D+ GS
Sbjct: 369 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE-EGRPVSITDLRGSG 427
Query: 651 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 703
D I + RN+ + + V VR ++ + G G A ++ YN+ TG
Sbjct: 428 ALRQLSDTIIALERNQQGDMPNL----VLVRILKCRFTGDTGIAGYMEYNKETG 477
>gi|448937001|gb|AGE60545.1| DNA primase [Pelagibacter phage HTVC011P]
Length = 534
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 140/579 (24%), Positives = 236/579 (40%), Gaps = 86/579 (14%)
Query: 144 CPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMK 203
C C+ D+ L+++L DG CF G S ++ L + + K
Sbjct: 14 CENCDSQDN----LAIYLTPDGSHGHTYCF-------GCHSY----EKTNGELPEVATTK 58
Query: 204 TIREITEDSLELEPLGNELRAYFAERLISAETLRR-NRVMQKRHGHEVVIAFPYWRNGKL 262
I + E E P R I++ET ++ N G V IA Y ++
Sbjct: 59 KITNMIEGITEALP----------SRKINSETCKKFNYETGTYKGEPVHIANYYDKDYNK 108
Query: 263 VNCKYRDFNKKFWQEKDTEKVFYGLDDI--EG--ESDIIIVEGEMDKLSME--EAGFLNC 316
V K R +K+F D +K+ + EG +S II+ EGE+D LS+ +
Sbjct: 109 VAQKLRFADKRFIWLGDPDKITLFGQQVWREGGEKSKIILTEGELDCLSVSAVQGNKYPV 168
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
S+P G+ S +KK + E Q +L + S IIL D D G + E+A
Sbjct: 169 CSIPSGSAS--AKKFIKKELQ------------FLSKFSSIILMFDTDEAGVKASVEVAN 214
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 436
+ + R P KD +E+L + + + A+ Y G+ D D
Sbjct: 215 LLPVRKVKIARLPA-------KDPSELLQKGQGSKIIDAMWEAKAYTPQGIIQGSDTKDL 267
Query: 437 IDAYYHRTSGDEF-GISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWID--ALICNIN 492
+ + +E I W LNE L + GEL ++ G +GKS+ A C +
Sbjct: 268 L------LNDEEVETIPYLWNGLNEKLQGIRFGELNLLCGGSGTGKSQMCREIAYDCILK 321
Query: 493 EH-AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS-- 549
H G+ + S++ +R L I P + S E++ +EEF++ K ++
Sbjct: 322 GHKVGYIALEESVKRSIRGIVSVGLNAQIHNPEVRKKF--SNEKL-LEEFDKVKDNIAFY 378
Query: 550 NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQM 609
+ F E D + I++++ V+ +VI ++ D +R + T TE
Sbjct: 379 DHFGSSDSE-DLMNRIRYMVQSLDCKVIILDHISIVISGLHDGDERRLIDNTMTE----- 432
Query: 610 LTMVKRFAQHHACHVWFVAHPRQ----LHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665
+++ + C ++ V+H ++ L + G +L + GS D I RN
Sbjct: 433 ---LRKLVEEVKCAMFVVSHLKRPSGNLGHEEGVQTSLSHLRGSHALAQLSDAVIGFERN 489
Query: 666 RDPEAGPIDRVQVCVRKVRNKVVGTIGEAF-LSYNRVTG 703
+ E + + VR ++N+ G G A L YN+VTG
Sbjct: 490 QQHET---ESNIMIVRVLKNRFSGETGVATSLIYNKVTG 525
>gi|148747808|ref|YP_001285774.1| DNA primase/helicase [Phormidium phage Pf-WMP3]
gi|146230041|gb|ABQ12449.1| DNA primase/helicase [Phormidium phage Pf-WMP3]
Length = 682
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 93/361 (25%), Positives = 147/361 (40%), Gaps = 56/361 (15%)
Query: 247 GHEVV---IAFPYW--RNGKLVNCKYRDFNKKFWQEKDTEKVFY-----GLDDIEGESD- 295
G EV+ + FPY+ KLV K RD + + KV Y GL I+ +SD
Sbjct: 38 GSEVIREALVFPYYDLSTSKLVGFKLRDLEA---ESRRGTKVCYTTGKLGLFAIKRKSDT 94
Query: 296 IIIVEGEMDKLSMEEA-GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA 354
++I EGE D L++ V +P + + + ++N+ +L+Q
Sbjct: 95 VVITEGEPDALTLASVYRKYTVVGLPGSSTTKLVRENL----------------TWLRQH 138
Query: 355 SRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKE 414
I L D D PGQ EEL + + ++V + KDANE L+ +L++
Sbjct: 139 KHIYLCLDSDEPGQLATEELISMLPGYKTYKVNLAR-------KDANEYLVAGDVLSLQK 191
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY--NVLPGELTIV 472
+AE + L D+ +A + DE TG+ +LN + + EL +
Sbjct: 192 AFSSAERVGVSVL------TDDNEATVNENEVDEVSYDTGFASLNSMLGGGLHVTELCGL 245
Query: 473 TGVPNSGKSEWIDALICNINEH-AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGG 531
G GKS++ + N+ EH K + E R+ R+ + H+ + F
Sbjct: 246 VGHTGRGKSQFAAQVAYNLAEHNEDLKMLYICTEMTHRQMVRRFSQIHLGRRFNGNVPVT 305
Query: 532 SAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 591
AER +A S + IR L D A+L GVR + ID N+
Sbjct: 306 KAER---------QAANSYIYRRIRFNRFELTDTNEFYDACVQAILEDGVRVIFIDVVND 356
Query: 592 L 592
L
Sbjct: 357 L 357
>gi|194100379|ref|YP_002003953.1| gp4B [Enterobacteria phage 13a]
gi|193201426|gb|ACF15903.1| gp4B [Enterobacteria phage 13a]
Length = 503
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 115/474 (24%), Positives = 187/474 (39%), Gaps = 75/474 (15%)
Query: 258 RNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 316
+NG +V+ K RD +K F + +G G I++ EGE+D L++ E
Sbjct: 51 QNGTIVSQKIRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKY 110
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 111 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDEAGRKAVEEAAQ 158
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY---PIMGLFNFRDY 433
+ + P KDANE + + E V NA + ++ + R+
Sbjct: 159 VLPAGKVRVAVLP-------CKDANECHLNGHDREIMEQVWNAGPWIPDGVVSALSLRER 211
Query: 434 FDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNI 491
E H +S + G+ +G +N+ GE+ +VT GKS ++
Sbjct: 212 IRE-----HLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 266
Query: 492 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE--EFEQGKAWLS 549
G K L +E V E A L+ H + +++ S +R +E +F+Q W
Sbjct: 267 GTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSD---SLKREIIENGKFDQ---WFD 320
Query: 550 NTF---------SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
F S E D L LAK A +R G+ VI LDH V
Sbjct: 321 ELFGNDTFHLYDSFAEAETDRL--------LAKLAYMRSGLGCDVI----ILDHISIVVS 368
Query: 601 T-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSA 650
E + + ++T +K FA+ + + H + + H G P ++ D+ GS
Sbjct: 369 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE-EGRPVSITDLRGSG 427
Query: 651 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 703
D I + RN+ + + V VR ++ + G G A ++ YN+ TG
Sbjct: 428 ALRQLSDTIIALERNQQGDMPNL----VLVRILKCRFTGDTGIAGYMEYNKETG 477
>gi|282857715|ref|ZP_06266924.1| DNA primase/helicase [Pyramidobacter piscolens W5455]
gi|282584385|gb|EFB89744.1| DNA primase/helicase [Pyramidobacter piscolens W5455]
Length = 537
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 112/483 (23%), Positives = 196/483 (40%), Gaps = 75/483 (15%)
Query: 252 IAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIV-EGEMDKLSME 309
+A Y +NG+ V R +K F W+ YG ++IV EGE+D LS+
Sbjct: 41 VATYYDQNGEPVAQHLRGKDKTFRWRGSPQNVKLYGQQLWNDHGKMVIVTEGEIDCLSVS 100
Query: 310 --EAGFLNCVSVPDGAPSSVS--KKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDP 365
+ VSVP+G S+V K N+ +L+ ++++ D D
Sbjct: 101 QVQGNRWPVVSVPNGVTSAVRAFKDNLE----------------WLESFEKVVICFDMDE 144
Query: 366 PGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIM 425
PG+ A E A+ + + + + P KD N++L L + +A Y
Sbjct: 145 PGRKAANEAAQVLSPGKAFIMYLP-------LKDPNDMLKAGKTAELISAIWSAAPYRPD 197
Query: 426 GLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWI 484
G+ + + +DE+ T E G +T + LN + + + EL + T GKS +
Sbjct: 198 GIVSGIELWDEL------TKAPEKGYATPFPKLNTMTDGIRKKELWLFTAGSGIGKSTVV 251
Query: 485 DALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERM------TV 538
+ + + ++E R A + L ++ KP G S E + T+
Sbjct: 252 HEIAYHFMTQHKLTIGVMALEESKRRAAERYLSIYLNKPLHLTREGVSEEALKDAYDHTI 311
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH---- 594
++G+ +L + F + D+L S +R+ ID + LDH
Sbjct: 312 G--QEGRFYLYDHFG--STDIDTLMS-----------RIRYMAVSCAID-FLVLDHISIV 355
Query: 595 ---QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH---PRQLHNW-VGEPPNLYDIS 647
R ++E + + ++T ++ + V V H P Q +W G+ P L D+
Sbjct: 356 VSGLRDAGESERKQIDMLMTALRSLVEDTGIGVLGVVHLKRPAQGASWNDGKKPALTDLR 415
Query: 648 GSAHFINKCDNGIVIHRN-RDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTGEY 705
GS D + + RN +D E G R+ V ++N+ G +G A L Y+ TG
Sbjct: 416 GSGGLEQLSDMVVSLSRNQQDEETGNYSRLNV----LKNRFTGVVGTADTLLYDNRTGRL 471
Query: 706 MDI 708
+ +
Sbjct: 472 LAV 474
>gi|312436361|gb|ADQ83170.1| DNA primase/helicase [Yersinia phage Yep-phi]
Length = 569
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 122/489 (24%), Positives = 193/489 (39%), Gaps = 77/489 (15%)
Query: 244 KRHGHEVVIAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGE 302
K +G + +A Y G LV K RD NK+F + K + +G G I++ EGE
Sbjct: 102 KVNGEMLQVANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGE 161
Query: 303 MDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILA 360
+D L++ + G VS+P GA ++ KK + + Y Q IIL
Sbjct: 162 IDCLTVAQLQEGKYPVVSLPMGAQAA--KKTCSANYE------------YFDQFDEIILM 207
Query: 361 TDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 420
D D PG+ EE A + + P KDANE L+ A+ + + NA+
Sbjct: 208 FDMDEPGRKAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 260
Query: 421 LYPIMGLFNFRDYFDEI--DAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPN 477
+ G+ + D + T+G F TG LN++ GE+ +VT
Sbjct: 261 PWVPDGVVSAVSLKDRVREAMVKEETTGLLF---TGQPTLNDMTLGARGGEVIMVTSGSG 317
Query: 478 SGKSEWIDALICNINEHAGWKFVLCSMENKVRE----------HARKLLEKHIKKPFFEA 527
GKS ++ + + G K L +E V E H R +K +K E
Sbjct: 318 MGKSTFVRQQMLQWGK-GGAKVGLAMLEEAVEETVQDLMGLNNHVRLRQDKELKMKILED 376
Query: 528 NYGGSAERMTVEEFEQGKAWLSNT--FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 585
F++ L NT F L DS + AK A + G+ V
Sbjct: 377 G-----------RFDEWYGALFNTDMFHLY----DSFAESQEDRLFAKLAYMVDGLDCNV 421
Query: 586 IDPYNELDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV-- 637
I LDH V + E + + +++T +K FA+ V + H +
Sbjct: 422 I----LLDHISIVVSGMEDNSDERKTIDRLMTKLKAFAKTKGVVVVVICHLKNPEKGKAH 477
Query: 638 --GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA- 694
G P ++ D+ GS D I + RN+ + + V +R ++ + G G A
Sbjct: 478 EEGRPVSITDLRGSGSLRQLSDTIIALERNQQGDYPNL----VQLRVLKCRFTGDTGVAG 533
Query: 695 FLSYNRVTG 703
++YN+ TG
Sbjct: 534 HMAYNKETG 542
>gi|119637761|ref|YP_918997.1| Helicase [Yersinia phage Berlin]
gi|194100484|ref|YP_002003329.1| 4B [Yersinia phage Yepe2]
gi|119391792|emb|CAJ70665.1| hypothetical protein [Yersinia phage Berlin]
gi|193201217|gb|ACF15698.1| 4B [Yersinia phage Yepe2]
Length = 503
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 121/487 (24%), Positives = 194/487 (39%), Gaps = 73/487 (14%)
Query: 244 KRHGHEVVIAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGE 302
K +G + +A Y G LV K RD NK+F + K + +G G I++ EGE
Sbjct: 36 KVNGEMLQVANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGE 95
Query: 303 MDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILA 360
+D L++ + G VS+P GA ++ KK + + Y Q IIL
Sbjct: 96 IDCLTVAQLQEGKYPVVSLPMGAQAA--KKTCSANYE------------YFDQFDEIILM 141
Query: 361 TDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 420
D D PG+ EE A + + P KDANE L+ A+ + + NA+
Sbjct: 142 FDMDEPGRKAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 194
Query: 421 LYPIMGLFNFRDYFDEI--DAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPN 477
+ G+ + D + T+G F TG LN++ GE+ +VT
Sbjct: 195 PWVPDGVVSAVSLKDRVREAMVKEETTGLLF---TGQPKLNDMTLGARGGEVIMVTSGSG 251
Query: 478 SGKSEWIDALICNINEHAGWKFVLCSMENKVRE----------HARKLLEKHIKKPFFEA 527
GKS ++ + + G K L +E V E H R +K +K E
Sbjct: 252 MGKSTFVRQQMLQWGK-GGAKVGLAMLEEAVEETVQDLMGLNNHVRLRQDKELKMKILED 310
Query: 528 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 587
G + E F L ++F+ + D L AK A + G+ VI
Sbjct: 311 ---GRFDEWYGELFNTDMFHLYDSFA--ESQEDRL--------FAKLAYMVDGLDCNVI- 356
Query: 588 PYNELDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV---- 637
LDH V + E + + +++T +K FA+ V + H +
Sbjct: 357 ---LLDHISIVVSGMEDNSDERKTIDRLMTKLKAFAKTKGVVVVVICHLKNPEKGKAHEE 413
Query: 638 GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FL 696
G P ++ D+ GS D I + RN+ + + V +R ++ + G G A +
Sbjct: 414 GRPVSITDLRGSGSLRQLSDTIIALERNQQGDYPNL----VQLRVLKCRFTGDTGVAGHM 469
Query: 697 SYNRVTG 703
+YN+ TG
Sbjct: 470 AYNKETG 476
>gi|312436362|gb|ADQ83171.1| DNA helicase [Yersinia phage Yep-phi]
Length = 503
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 122/489 (24%), Positives = 193/489 (39%), Gaps = 77/489 (15%)
Query: 244 KRHGHEVVIAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGE 302
K +G + +A Y G LV K RD NK+F + K + +G G I++ EGE
Sbjct: 36 KVNGEMLQVANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGE 95
Query: 303 MDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILA 360
+D L++ + G VS+P GA ++ KK + + Y Q IIL
Sbjct: 96 IDCLTVAQLQEGKYPVVSLPMGAQAA--KKTCSANYE------------YFDQFDEIILM 141
Query: 361 TDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 420
D D PG+ EE A + + P KDANE L+ A+ + + NA+
Sbjct: 142 FDMDEPGRKAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 194
Query: 421 LYPIMGLFNFRDYFDEI--DAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPN 477
+ G+ + D + T+G F TG LN++ GE+ +VT
Sbjct: 195 PWVPDGVVSAVSLKDRVREAMVKEETTGLLF---TGQPTLNDMTLGARGGEVIMVTSGSG 251
Query: 478 SGKSEWIDALICNINEHAGWKFVLCSMENKVRE----------HARKLLEKHIKKPFFEA 527
GKS ++ + + G K L +E V E H R +K +K E
Sbjct: 252 MGKSTFVRQQMLQWGK-GGAKVGLAMLEEAVEETVQDLMGLNNHVRLRQDKELKMKILED 310
Query: 528 NYGGSAERMTVEEFEQGKAWLSNT--FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 585
F++ L NT F L DS + AK A + G+ V
Sbjct: 311 G-----------RFDEWYGALFNTDMFHLY----DSFAESQEDRLFAKLAYMVDGLDCNV 355
Query: 586 IDPYNELDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV-- 637
I LDH V + E + + +++T +K FA+ V + H +
Sbjct: 356 I----LLDHISIVVSGMEDNSDERKTIDRLMTKLKAFAKTKGVVVVVICHLKNPEKGKAH 411
Query: 638 --GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA- 694
G P ++ D+ GS D I + RN+ + + V +R ++ + G G A
Sbjct: 412 EEGRPVSITDLRGSGSLRQLSDTIIALERNQQGDYPNL----VQLRVLKCRFTGDTGVAG 467
Query: 695 FLSYNRVTG 703
++YN+ TG
Sbjct: 468 HMAYNKETG 476
>gi|255519165|ref|ZP_05386841.1| replicative DNA helicase [Clostridium difficile QCD-97b34]
Length = 443
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 118/259 (45%), Gaps = 18/259 (6%)
Query: 443 RTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
R G I TG+ LN + + G LTI+TG P SGKS ++ I + G K L
Sbjct: 157 REKGVHKSIDTGFNKLNNMLDGFRYGTLTILTGKPASGKSTIVNQFIAQAITN-GEKAFL 215
Query: 502 CSME---NKVREHARKLL--EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIR 556
S E + RK + + HIK+ +++ YGG+ + E W+ + F L
Sbjct: 216 YSGELPSFMSMDWFRKTVANDYHIKE--YKSVYGGTYTDIPDYAVELISDWIEDKFFL-- 271
Query: 557 CENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRF 616
+ D++ +L+ + L+ GVR V+D + + E + Q+++ +K
Sbjct: 272 YDEDAISDEVNLLNTIEHLYLKKGVRFFVLDNLMTIKTGNKADKYERQ--EQIVSNLKNL 329
Query: 617 AQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRV 676
A+ + + VAHPR+ N P +YD+SG++ +N D + +R D E D
Sbjct: 330 AKKYNLVIVLVAHPRK--NMGDMKPTMYDVSGASEIVNYADYILSTYRVVDEEEETDDTY 387
Query: 677 QVCVRKVRNKVVGTIGEAF 695
+ ++N++ G +F
Sbjct: 388 LLI---LKNRITGKQNISF 403
>gi|302800874|ref|XP_002982194.1| hypothetical protein SELMODRAFT_421553 [Selaginella moellendorffii]
gi|300150210|gb|EFJ16862.1| hypothetical protein SELMODRAFT_421553 [Selaginella moellendorffii]
Length = 287
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV-REHAR 513
+T+VTGVPNSGKSEWID L+CN+N W F LCSMENKV R H +
Sbjct: 50 ITVVTGVPNSGKSEWIDDLVCNLNHSKNWIFALCSMENKVWRIHTK 95
>gi|325185979|emb|CCA20483.1| twinkle protein putative [Albugo laibachii Nc14]
Length = 776
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 100/438 (22%), Positives = 178/438 (40%), Gaps = 74/438 (16%)
Query: 284 FYGLDDIEGESD-IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 342
+G + + ++D I++ EGE D +++ +A VS+P+G S+ +P E+ K
Sbjct: 310 LFGWNTVPADADEIVLTEGEFDAMTVYQATGKPAVSLPNGC-QSLPPSILPLLERFKKI- 367
Query: 343 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRW-----PKKNDVDHF 397
YLW D D GQA + ++G+ RC VR PK ++
Sbjct: 368 YLW---------------MDNDAQGQANVSKFTIKLGQSRCHIVRMASAALPKSCNI--- 409
Query: 398 KDANEVLMYLGPGALKEVVENAELYPIMGLFNF----RDYFDEI-DAYYHRTSGDEFGIS 452
KDANE Y L +++ AE P + F + F+EI + R G+
Sbjct: 410 KDANEA--YREKIDLAKLLAQAERIPHAQIATFEHLRQQVFEEILNPIRLR------GVQ 461
Query: 453 TGWRALNELYNVLP----GELTIVTGVPNSGKSEWIDAL---ICNINEHAGWKFVLCSME 505
+ R+L L +L GE+TI+TG GK+ + L +C W
Sbjct: 462 S--RSLPSLNRLLKGHRLGEVTILTGPTGCGKTTLLSQLSLDLCGQGVSTLWGSFEIQNT 519
Query: 506 NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSI 565
+ + +L K ++ +A + + FE + F +
Sbjct: 520 RLIHKMMTQLAGKSLQG-------DPAAFEIAADSFEDLPMYFLRFFGTT--------DV 564
Query: 566 KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 625
++D + AV + V+ +++D + + + E L +RFA H+
Sbjct: 565 DELMDAVEYAVYAYDVQHILLDNVQFMMAGQGRGFDKFERQDAALDKFRRFATQKNVHIT 624
Query: 626 FVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRN 685
V HPR+ G+ +L + G+A + DN +++ R R + ++ VRK N
Sbjct: 625 LVIHPRK--EAEGQDLSLSSVFGTAKATQEADNVLILQRIR-------GQSRLDVRK--N 673
Query: 686 KVVGTIGEAFLSYNRVTG 703
+ G++G L Y+ +G
Sbjct: 674 RFDGSLGSVPLQYDSESG 691
>gi|403330901|gb|EJY64364.1| putative hydrolases or acyltransferases (alpha/beta hydrolase
superfamily) [Oxytricha trifallax]
Length = 1556
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 92/441 (20%), Positives = 191/441 (43%), Gaps = 47/441 (10%)
Query: 273 KFWQEKDTEKVFYGLDDIEGESD-IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKN 331
KF K +GL I+ E I+I EGE D +++ + + VS+P+GA + + +
Sbjct: 243 KFMPAGSDLKGLFGLTTIKPEHKAIVITEGEYDAMAVYQETGIPAVSLPNGA-NHLPVQV 301
Query: 332 VPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 391
+P + ++ RI L D D G+ AE+ A+++G +R + +
Sbjct: 302 LP----------------FFERFERIYLWLDADEVGRNSAEKFAQKLGVKRTIIID-SRF 344
Query: 392 NDVDHFKDANEVL-MYLG-PGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF 449
D + KDAN+ L M L K+ ++ + + +D + Y +G
Sbjct: 345 EDENGPKDANDALRMKLDFANIFKKYSRQLGDQNLLTISDMKDSVMKRLLNYTELTGVPS 404
Query: 450 GISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 509
T + L + GELT++TG SGK+ ++ L + G + S E K
Sbjct: 405 NCFTFFNRT--LKGLRKGELTVLTGATGSGKTTFLSQLSIDFVAQ-GIPTLWGSFEIKNT 461
Query: 510 EHARKLLEKHIKKPFFEANYGGSAERM--TVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 567
A +L+++ + + + ER+ +E+FEQ + N + + +
Sbjct: 462 ILASSMLQQYSRIKLTSS----TPERIGTELEKFEQHPLYFLNFYGSTQ--------VDL 509
Query: 568 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 627
+ + A+ + ++ + +D + + ++ ++++M+++ A H+ V
Sbjct: 510 LFETLDYAIYAYDIQYICLDNLQFMLSGQSTGFQRFDFQDKVISMLRQLATEKNVHIALV 569
Query: 628 AHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKV 687
HP+++ + N+ + GSA + DN +++ + + P + +Q+ +N+
Sbjct: 570 VHPKKVED--DNNLNVGSVFGSAKTTQEADNVMILQKFQTPN---LRNIQIK----KNRF 620
Query: 688 VGTIGEAFLSYNRVTGEYMDI 708
G +GEA L +N Y++I
Sbjct: 621 DGEVGEAQLIFNVENKRYVEI 641
>gi|37956715|gb|AAP33984.1| gene 4A [Enterobacteria phage T7]
Length = 566
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 122/507 (24%), Positives = 198/507 (39%), Gaps = 76/507 (14%)
Query: 226 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-V 283
R IS ET ++ + K G +A +NG +V+ K RD +K F +
Sbjct: 81 LTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDA 140
Query: 284 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 343
+G G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 141 LFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCVANYE------ 194
Query: 344 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 403
Y Q +IIL D D G+ EE A+ + + P KDANE
Sbjct: 195 ------YFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANEC 241
Query: 404 LMYLGPGALKEVVENAELY---PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALN 459
+ + E V NA + ++ + R+ E H +S + G+ +G +N
Sbjct: 242 HLNGHDREIMEQVWNAGPWIPDGVVSALSLRERIRE-----HLSSEESVGLLFSGCTGIN 296
Query: 460 E-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 518
+ GE+ +VT GKS ++ G K L +E V E A L+
Sbjct: 297 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGL 356
Query: 519 HIKKPFFEANYGGSAERMTVE--EFEQGKAWLSNTF---------SLIRCENDSLPSIKW 567
H + +++ S +R +E +F+Q W F S E D L
Sbjct: 357 HNRVRLRQSD---SLKRKIIENGKFDQ---WFDELFGNDTFHLYDSFAEAETDRL----- 405
Query: 568 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHAC 622
LAK A + G+ VI LDH V E + + ++T +K FA+
Sbjct: 406 ---LAKLAYMCSGLGCDVI----ILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGV 458
Query: 623 HVWFVAHPR-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 677
+ + H + + H G P ++ D+ GS D I + RN+ + +
Sbjct: 459 VLVVICHLKNPDKGKAHE-EGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL---- 513
Query: 678 VCVRKVRNKVVGTIGEA-FLSYNRVTG 703
V VR ++ + G G A ++ YN+ TG
Sbjct: 514 VLVRILKCRFTGDTGIAGYMEYNKETG 540
>gi|456738218|gb|EMF62895.1| DNA primase/helicase [Stenotrophomonas maltophilia EPM1]
Length = 488
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 97/416 (23%), Positives = 172/416 (41%), Gaps = 55/416 (13%)
Query: 226 FAERLISAETLRRNR--VMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKV 283
A+R I+ E R+ + + +HG V IA Y R+G +V K R +KKF D++
Sbjct: 12 LAKRGITEEACRKYGYWIGKDKHGKTVQIA-NYKRDGGIVAQKLRYPDKKFSFIGDSKAC 70
Query: 284 -FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLN--CVSVPDGAPSSVSKKNVPSEEQDTK 340
+G E ++I EGE+D LS+ +A L VSVP+GA + K++ E +
Sbjct: 71 GLFGQHLYEPGRRLVITEGEIDALSVAQALGLRWPVVSVPNGAQGAA--KSIKRELE--- 125
Query: 341 YQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDA 400
++ ++L D D PGQA A+E+A + + + P KD
Sbjct: 126 ---------WVNGFDEVVLMFDMDEPGQAAAQEVALLLTPGKAKIAQLPA-------KDP 169
Query: 401 NEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW---RA 457
NE+L A+ + A+ G+ F + + W R
Sbjct: 170 NELLQRGDAEAITRAIYEAQTKRPDGVVTF--------GSLKEKALKPVSMGMPWHDPRL 221
Query: 458 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 517
Y GE+ GK++W+ I + G + L +E + E A+++
Sbjct: 222 TALTYGKRYGEVYTFGAGTGIGKTDWLMEEAAFIAQETGDRVGLFFLEQQPVETAKRMAG 281
Query: 518 KHIKKPFFEANYGGSAERM--TVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA 575
K + F + + E + E ++G+ ++ + F S +W + AK A
Sbjct: 282 KVAGRRFHVPDGSWTQEELEAAFEILDKGQVFIYDHFG----------SSEWDVIEAKMA 331
Query: 576 --VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 629
V+ GV+ +V+D L ++ E + + + + +FAQ H ++ V+H
Sbjct: 332 HMVVAEGVKHIVLD---NLTSFAAGAEDERKMLEDTMAKIAQFAQRHLICIYLVSH 384
>gi|451989081|gb|AGF91554.1| hypothetical protein PRRG_00045 [Prochlorococcus phage P-RSP2]
Length = 533
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 131/583 (22%), Positives = 232/583 (39%), Gaps = 90/583 (15%)
Query: 144 CPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMK 203
CPKC ++ L+++ D G+ CF C N S+L +
Sbjct: 8 CPKCGSKNN----LAVYEDGHGW-----CFTPGC-----------NTYIPSTLSE----- 42
Query: 204 TIREITEDSLELEP-LGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGK- 261
+T E+EP +GN + R IS +T + + HG E + + N +
Sbjct: 43 ---PMTSSIKEIEPVIGNYVP--IKNRSISVDTCKFFGYQKGMHGGEPAYYWAIYDNQRR 97
Query: 262 LVNCKYRDFNKKF-WQEKDTEKVFYGLDD-IEGESDIIIVEGEMDKLSMEEAGFLN--CV 317
L K R NK+F Q + + F G + G ++I EGE D LS EA + CV
Sbjct: 98 LTGYKIRKPNKQFLMQGSNPDSRFLGQEKWGSGGKLLVIFEGEYDALSYAEARNRSWACV 157
Query: 318 SVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARR 377
S+P+G V S + K Q W + IIL D D G+ A+ +
Sbjct: 158 SLPNG---------VESGNKTLKAQLPW-----VLTFETIILCYDNDEHGKKAAQRDIQL 203
Query: 378 VGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI 437
+ R K V+ +KDA+E L A+ +V +A Y G+ N D++
Sbjct: 204 LPPRR------GKIGTVEGYKDASEALTANDNKAIMRMVYDAVEYEPDGIVNASKLLDKV 257
Query: 438 --DAYYHRTSGDEFGISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEH 494
D H + LN+ L + GEL +V GKS +++ + ++
Sbjct: 258 LEDPEVHS-------YEYPYSFLNDKLKGIRLGELVLVCSGTGIGKSTFVNEIAYDLLVR 310
Query: 495 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ----GKAWLSN 550
G + ++E R A++ + ++ P + G + F + G+ +L +
Sbjct: 311 QGQTVGVIALEENNRRTAQRFISINLNYP-IHIHRGDITDEEIKNAFSKTLGSGRLYLYD 369
Query: 551 TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 610
F + + +L+ + ++ G R ++ D + L S E + + + +
Sbjct: 370 HFGSL--------DVNTMLNRIRHLIVSMGCRFIIFDHLSILVSGLDESD-ERKAIDKCV 420
Query: 611 TMVKRFAQHHACHVWFVAHPRQLHN----WVGEPPNLYDISGSAHFINKCDNGIVIHRN- 665
T ++ + C + V+H R+ G+ +L I GS+ D I + R+
Sbjct: 421 TKLRSLVEETGCSMILVSHLRRPQGNKGYEDGQQTSLSGIRGSSAIACLSDICIGLERDQ 480
Query: 666 RDPEAGPIDRVQVCVRKVRNKVVGTIG-EAFLSYNRVTGEYMD 707
+D E+G VR ++N+ G G ++Y+ TG ++
Sbjct: 481 QDTESGE----GTVVRTLKNRFTGWTGVTGKVNYDEHTGRMLE 519
>gi|26988994|ref|NP_744419.1| DNA primase/helicase [Pseudomonas putida KT2440]
gi|24983814|gb|AAN67883.1|AE016420_5 DNA primase/helicase [Pseudomonas putida KT2440]
Length = 544
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 124/505 (24%), Positives = 201/505 (39%), Gaps = 84/505 (16%)
Query: 228 ERLISAETLRR-NRVMQKRHGHEVVIAFPYWRN-GKLVNCKYRDFNKKFWQEKDTEKV-F 284
+R ++ ET R+ + + G V +A PY+ N G +V K RD +K F D K+
Sbjct: 75 KRKLTLETCRKFGYFVSEVRGRLVQVA-PYFDNSGVMVAQKLRDQDKGFAILGDGAKLTL 133
Query: 285 YGLDD-IEGESDIIIVEGEMDKLSMEEA--GFLNCVSVPDGAPSS--VSKKNVPSEEQDT 339
+G + G I++ EGE+D +S+ + VS+P+GAP++ ++N+
Sbjct: 134 FGQNLWASGGKKIVVTEGELDAMSVSQVQNNKWPVVSLPNGAPAARKAIQRNIE------ 187
Query: 340 KYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKD 399
YL+ +IL D D PG+ A+E A +C K KD
Sbjct: 188 ----------YLESFEEVILMFDMDEPGREAAQECAELFSPGKC-------KIATLSMKD 230
Query: 400 ANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI------------DAYYHRTSGD 447
ANE+L+ + + NA+LY G+ N RD +EI D T G
Sbjct: 231 ANELLVAGREQEIVTAIWNAKLYRPDGVVNVRDLLEEIRKALVMGLPWFLDPLTQLTYGR 290
Query: 448 EFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507
+G E+Y + G TGV GK++++ I + G + +E K
Sbjct: 291 RYG---------EVYGLGAG-----TGV---GKTDFLTQQIAYDIQVLGERVGTIFLEQK 333
Query: 508 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 567
E A+++ K K F T EE + L + D+ +W
Sbjct: 334 PTETAKRVAGKIAGKRFHVPK---DTAGWTDEELDAAVDALGENLVMY----DAFGETEW 386
Query: 568 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVS--QMLTMVKRFAQHHACHVW 625
D+ K V V + Y +DH ++ T E S Q++ + A +
Sbjct: 387 --DIVKRKVRYMAVSEGIKLIY--IDHLTAMADTADEKGSLEQIMKEMAGLANELGIIIT 442
Query: 626 FVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNG----IVIHRNRDPEA-GPIDRVQVCV 680
F++H L G+P HF G + RD +A P+ R
Sbjct: 443 FISH---LTTPEGKPHEEGGRVTIRHFKGSRAIGFWSYFMFGLERDQQAEDPVVRQTTTF 499
Query: 681 RKVRNKVVG-TIGEA-FLSYNRVTG 703
R ++++ G GE +L+Y+R TG
Sbjct: 500 RILKDRYTGQATGEVLYLAYDRDTG 524
>gi|422935540|ref|YP_007005441.1| DNA primase/helicase [Erwinia phage vB_EamP-L1]
gi|339507924|gb|AEJ81485.1| DNA primase/helicase [Erwinia phage vB_EamP-L1]
Length = 572
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 120/496 (24%), Positives = 195/496 (39%), Gaps = 55/496 (11%)
Query: 226 FAERLISAETLRRNRVMQKRHGHEVVIAFPYW-RNGKLVNCKYRDFNKKFWQE-KDTEKV 283
+R IS ET R+ + +++ Y +NG +V+ K RD +K F K +
Sbjct: 88 LTKRGISEETCRKAGYWIAKVNNQMYQVADYRDQNGSIVSQKIRDKDKNFKTTGKHSPDA 147
Query: 284 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 343
+ G I++ EGE+D L++ E V G S +KK + +
Sbjct: 148 LFLKHLWNGGKKIVVTEGEIDALTVMELQDCKYPVVSIGHGSKAAKKTLAANFD------ 201
Query: 344 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 403
Y Q IIL D D PG+ EE A + + P KDANE
Sbjct: 202 ------YFDQFDEIILMFDMDEPGRIAIEECAPVLPSGKVRVAVLPD-------KDANEC 248
Query: 404 LMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALNEL- 461
++ AL E + NA + G+ + D + S E G+ TG ALN+L
Sbjct: 249 MLNGNQKALMEQIWNASPWVPDGVVSAISLKDRVREAMQ--SAKEVGLLFTGNPALNDLT 306
Query: 462 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKL--LEKH 519
GE+ ++T GKS + + G K LC++E V E L L+ +
Sbjct: 307 LGARLGEVIMITSGSGMGKSTFARQQMLQWGRE-GIKVGLCALEESVEETVEDLMGLDNN 365
Query: 520 IKKPFFEANYGGSAERMTVEEFEQGKAWL--SNTFSLIRCENDSLPSIKWVLDLAKAAVL 577
++ N + + F+ L S+ F L DS + AK A +
Sbjct: 366 VR---LRQNKEMREQILADGRFDSWYDALFDSDMFHLY----DSFAESQEDRLFAKMAYM 418
Query: 578 RHGVRGLVIDPYNELDHQRPV-----SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ 632
G+ VI LDH V E + + +++T +K FA+ C V + H +
Sbjct: 419 VDGLGCKVI----LLDHISIVVSGSEESDERKMIDRLMTKLKSFAKSKGCVVVVICHLKN 474
Query: 633 LHNWV----GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVV 688
G P ++ D+ GS D I + R++ + + V +R ++ +
Sbjct: 475 PEKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERDQQGDNPNV----VQLRLLKCRFT 530
Query: 689 GTIGEA-FLSYNRVTG 703
G G A + Y+++TG
Sbjct: 531 GDTGIAGHMEYDKLTG 546
>gi|423080703|ref|ZP_17069321.1| replicative DNA helicase [Clostridium difficile 002-P50-2011]
gi|357552553|gb|EHJ34324.1| replicative DNA helicase [Clostridium difficile 002-P50-2011]
Length = 442
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 118/259 (45%), Gaps = 19/259 (7%)
Query: 443 RTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
R G I TG+ LN + + G LTI+TG P SGKS ++ I + G K L
Sbjct: 157 REKGVHKSIDTGFNKLNNMLDGFRYGTLTILTGKPASGKSTIVNQFIAQAITN-GEKAFL 215
Query: 502 CSME---NKVREHARKLL--EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIR 556
S E + RK + + HIK+ +++ YGG+ + E W+ + F L
Sbjct: 216 YSGELPSFMAMDWFRKTVANDYHIKE--YKSVYGGTYTDIPDYASELISDWIKDKFFL-- 271
Query: 557 CENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRF 616
+ D++ +L+ + L+ GVR V+D L + + E Q+++ +K
Sbjct: 272 YDEDAISDEVNLLNTIEHLYLKKGVRFFVLD---NLMTIKTGKADKYERQEQIVSNLKNL 328
Query: 617 AQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRV 676
A+ + + VAHPR+ N P +YD+SG++ +N D + +R D E D
Sbjct: 329 AKKYNLVIVLVAHPRK--NMGDMKPTMYDVSGASEIVNYADYILSTYRVVDEEEETDDTY 386
Query: 677 QVCVRKVRNKVVGTIGEAF 695
+ ++N++ G +F
Sbjct: 387 LLI---LKNRITGKQNISF 402
>gi|422935541|ref|YP_007005442.1| DNA helicase [Erwinia phage vB_EamP-L1]
gi|339507925|gb|AEJ81486.1| DNA helicase [Erwinia phage vB_EamP-L1]
Length = 506
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 119/503 (23%), Positives = 194/503 (38%), Gaps = 69/503 (13%)
Query: 226 FAERLISAETLRRNRVMQKRHGHEVVIAFPYW-RNGKLVNCKYRDFNKKFWQE-KDTEKV 283
+R IS ET R+ + +++ Y +NG +V+ K RD +K F K +
Sbjct: 22 LTKRGISEETCRKAGYWIAKVNNQMYQVADYRDQNGSIVSQKIRDKDKNFKTTGKHSPDA 81
Query: 284 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 343
+ G I++ EGE+D L++ E V G S +KK + +
Sbjct: 82 LFLKHLWNGGKKIVVTEGEIDALTVMELQDCKYPVVSIGHGSKAAKKTLAANFD------ 135
Query: 344 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 403
Y Q IIL D D PG+ EE A + + P KDANE
Sbjct: 136 ------YFDQFDEIILMFDMDEPGRIAIEECAPVLPSGKVRVAVLPD-------KDANEC 182
Query: 404 LMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALNEL- 461
++ AL E + NA + G+ + D + S E G+ TG ALN+L
Sbjct: 183 MLNGNQKALMEQIWNASPWVPDGVVSAISLKDRVREAMQ--SAKEVGLLFTGNPALNDLT 240
Query: 462 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKL--LEKH 519
GE+ ++T GKS + + G K LC++E V E L L+ +
Sbjct: 241 LGARLGEVIMITSGSGMGKSTFARQQMLQWGRE-GIKVGLCALEESVEETVEDLMGLDNN 299
Query: 520 IKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF---------SLIRCENDSLPSIKWVLD 570
++ N + + F+ +W F S + D L
Sbjct: 300 VR---LRQNKEMREQILADGRFD---SWYDALFDSDMFHLYDSFAESQEDRL-------- 345
Query: 571 LAKAAVLRHGVRGLVIDPYNELDHQRPV-----SQTETEYVSQMLTMVKRFAQHHACHVW 625
AK A + G+ VI LDH V E + + +++T +K FA+ C V
Sbjct: 346 FAKMAYMVDGLGCKVI----LLDHISIVVSGSEESDERKMIDRLMTKLKSFAKSKGCVVV 401
Query: 626 FVAHPRQLHNWV----GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVR 681
+ H + G P ++ D+ GS D I + R++ + + V +R
Sbjct: 402 VICHLKNPEKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERDQQGDNPNV----VQLR 457
Query: 682 KVRNKVVGTIGEA-FLSYNRVTG 703
++ + G G A + Y+++TG
Sbjct: 458 LLKCRFTGDTGIAGHMEYDKLTG 480
>gi|37956717|gb|AAP33986.1| gene 4B [Enterobacteria phage T7]
Length = 503
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 122/507 (24%), Positives = 198/507 (39%), Gaps = 76/507 (14%)
Query: 226 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-V 283
R IS ET ++ + K G +A +NG +V+ K RD +K F +
Sbjct: 18 LTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDA 77
Query: 284 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 343
+G G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 78 LFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCVANYE------ 131
Query: 344 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 403
Y Q +IIL D D G+ EE A+ + + P KDANE
Sbjct: 132 ------YFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANEC 178
Query: 404 LMYLGPGALKEVVENAELY---PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALN 459
+ + E V NA + ++ + R+ E H +S + G+ +G +N
Sbjct: 179 HLNGHDREIMEQVWNAGPWIPDGVVSALSLRERIRE-----HLSSEESVGLLFSGCTGIN 233
Query: 460 E-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 518
+ GE+ +VT GKS ++ G K L +E V E A L+
Sbjct: 234 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGL 293
Query: 519 HIKKPFFEANYGGSAERMTVE--EFEQGKAWLSNTF---------SLIRCENDSLPSIKW 567
H + +++ S +R +E +F+Q W F S E D L
Sbjct: 294 HNRVRLRQSD---SLKRKIIENGKFDQ---WFDELFGNDTFHLYDSFAEAETDRL----- 342
Query: 568 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHAC 622
LAK A + G+ VI LDH V E + + ++T +K FA+
Sbjct: 343 ---LAKLAYMCSGLGCDVI----ILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGV 395
Query: 623 HVWFVAHPR-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 677
+ + H + + H G P ++ D+ GS D I + RN+ + +
Sbjct: 396 VLVVICHLKNPDKGKAHE-EGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL---- 450
Query: 678 VCVRKVRNKVVGTIGEA-FLSYNRVTG 703
V VR ++ + G G A ++ YN+ TG
Sbjct: 451 VLVRILKCRFTGDTGIAGYMEYNKETG 477
>gi|326536124|ref|YP_004300553.1| gp4a [Enterobacteria phage 285P]
gi|256861513|gb|ACV32469.1| gp4a [Enterobacteria phage 285P]
Length = 570
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 118/482 (24%), Positives = 194/482 (40%), Gaps = 63/482 (13%)
Query: 244 KRHGHEVVIAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGE 302
K +G + +A Y G LV K RD NK+F + K + +G G I++ EGE
Sbjct: 103 KVNGEMLQVANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGE 162
Query: 303 MDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILA 360
+D L++ + G VS+P GA ++ KK + + Y Q IIL
Sbjct: 163 IDCLTVAQLQEGKYPVVSLPMGAQAA--KKTCAANFE------------YFDQFDEIILM 208
Query: 361 TDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 420
D D PG+ EE A + + P KDANE L+ A+ + + NA+
Sbjct: 209 FDMDEPGRKAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 261
Query: 421 LYPIMGLFNFRDYFDEI--DAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPN 477
+ G+ + D + T+G F TG LN++ GE+ +VT
Sbjct: 262 PWVPDGVVSAVSLKDRVREAMVKEETTGLLF---TGQPKLNDMTLGARGGEVIMVTSGSG 318
Query: 478 SGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKL--LEKHIKKPFFEANYGGSAER 535
GKS ++ + + G K L +E V E + L L H++ +
Sbjct: 319 MGKSTFVRQQMLMWGK-GGAKVGLAMLEEAVEETVQDLMGLNNHVRLR--------QDKE 369
Query: 536 MTVEEFEQGK--AWLSNTFSLIRCE-NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL 592
+ ++ E G+ W F+ DS + AK A + G+ VI L
Sbjct: 370 LKMQILEDGRFDEWYDVLFNTDMFHLYDSFAESQEDRLFAKLAYMVDGLDCNVI----LL 425
Query: 593 DHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPPN 642
DH V + E + + +++T +K FA+ V + H + G P +
Sbjct: 426 DHISIVVSGMEDNSDERKTIDRLMTKLKAFAKTKGVVVVVICHLKNPEKGKAHEEGRPVS 485
Query: 643 LYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRV 701
+ D+ GS D I + RN+ + + V +R ++ + G G A ++YN+
Sbjct: 486 ITDLRGSGALRQLSDTIIALERNQQGDYPNL----VQLRVLKCRFTGDTGVAGHMAYNKE 541
Query: 702 TG 703
TG
Sbjct: 542 TG 543
>gi|423084778|ref|ZP_17073275.1| replicative DNA helicase [Clostridium difficile 050-P50-2011]
gi|357551591|gb|EHJ33378.1| replicative DNA helicase [Clostridium difficile 050-P50-2011]
Length = 442
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 118/259 (45%), Gaps = 19/259 (7%)
Query: 443 RTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
R G I TG+ LN + + G LTI+TG P SGKS ++ I + G K L
Sbjct: 157 REKGVHKSIDTGFNKLNNMLDGFRYGTLTILTGKPASGKSTIVNQFIAQAITN-GEKAFL 215
Query: 502 CSME---NKVREHARKLL--EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIR 556
S E + RK + + HIK+ +++ YGG+ + E W+ + F L
Sbjct: 216 YSGELPSFMAMDWFRKTVANDYHIKE--YKSVYGGTYTDIPDYASELISDWIKDKFFL-- 271
Query: 557 CENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRF 616
+ D++ +L+ + L+ GVR V+D L + + E Q+++ +K
Sbjct: 272 YDEDAISDEVNLLNTIEHLYLKKGVRFFVLD---NLMTIKTGKADKYERQEQIVSNLKNL 328
Query: 617 AQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRV 676
A+ + + VAHPR+ N P +YD+SG++ +N D + +R D E D
Sbjct: 329 AKKYNLVIVLVAHPRK--NMGDMKPTMYDVSGASEIVNYADYILSTYRVIDEEEETDDTY 386
Query: 677 QVCVRKVRNKVVGTIGEAF 695
+ ++N++ G +F
Sbjct: 387 LLI---LKNRITGKQNISF 402
>gi|255103064|ref|ZP_05332041.1| replicative DNA helicase [Clostridium difficile QCD-63q42]
Length = 443
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 116/258 (44%), Gaps = 16/258 (6%)
Query: 443 RTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICN--INEHAGWKF 499
R G I TG+ LN + + G LTI+TG P SGKS ++ I +N+ + +
Sbjct: 157 REKGVHKSIDTGFNKLNNMLDGFRYGTLTILTGKPASGKSTIVNQFIAEAIVNKEKAFLY 216
Query: 500 VLCSMENKVREHARKLL--EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRC 557
E RK + + HIK+ +++ YGG+ + E W+ + L
Sbjct: 217 SGELPAFMAMEWFRKTVANDYHIKE--YKSVYGGTYTDIPDYASELISDWIED--KLFLY 272
Query: 558 ENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFA 617
+ D++ +L+ + L+ GVR V+D + + E + Q+++ +K A
Sbjct: 273 DEDAISDEVNLLNTIEHLYLKKGVRFFVLDNLMTIKTGNKADKYERQ--EQIVSNLKNLA 330
Query: 618 QHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 677
+ + + VAHPR+ N P +YD+SG++ +N D + +R D E D
Sbjct: 331 KKYNLVIVLVAHPRK--NMGDMKPTMYDVSGASEIVNYADYILSTYRVIDEEEEADDTYL 388
Query: 678 VCVRKVRNKVVGTIGEAF 695
+ ++N++ G +F
Sbjct: 389 LI---LKNRITGKQNISF 403
>gi|255313150|ref|ZP_05354733.1| replicative DNA helicase [Clostridium difficile QCD-76w55]
gi|384359021|ref|YP_006196876.1| replicative DNA helicase [Clostridium difficile BI1]
Length = 443
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 116/258 (44%), Gaps = 16/258 (6%)
Query: 443 RTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICN--INEHAGWKF 499
R G I TG+ LN + + G LTI+TG P SGKS ++ I +N+ + +
Sbjct: 157 REKGVHKSIDTGFNKLNNMLDGFRYGTLTILTGKPASGKSTIVNQFIAEAIVNKEKAFLY 216
Query: 500 VLCSMENKVREHARKLL--EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRC 557
E RK + + HIK+ +++ YGG+ + E W+ + L
Sbjct: 217 SGELPAFMAMEWFRKTVANDYHIKE--YKSVYGGTYTDIPDYASELISDWIED--KLFLY 272
Query: 558 ENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFA 617
+ D++ +L+ + L+ GVR V+D + + E + Q+++ +K A
Sbjct: 273 DEDAISDEVNLLNTIEHLYLKKGVRFFVLDNLMTIKTGNKADKYERQ--EQIVSNLKNLA 330
Query: 618 QHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 677
+ + + VAHPR+ N P +YD+SG++ +N D + +R D E D
Sbjct: 331 KKYNLVIVLVAHPRK--NMGDMKPTMYDVSGASEIVNYADYILSTYRVVDEEEETDDTYL 388
Query: 678 VCVRKVRNKVVGTIGEAF 695
+ ++N++ G +F
Sbjct: 389 LI---LKNRITGKQNISF 403
>gi|194100271|ref|YP_002003469.1| gp4A [Enterobacteria phage BA14]
gi|193201266|gb|ACF15746.1| gp4A [Enterobacteria phage BA14]
Length = 570
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 122/489 (24%), Positives = 193/489 (39%), Gaps = 77/489 (15%)
Query: 244 KRHGHEVVIAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGE 302
K +G + +A Y G LV K RD NK+F + K + +G G I++ EGE
Sbjct: 103 KVNGEMLQVANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGE 162
Query: 303 MDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILA 360
+D L++ + G VS+P GA ++ KK + + Y Q IIL
Sbjct: 163 IDCLTVAQLQEGKYPVVSLPMGAQAA--KKTCAANYE------------YFDQFDEIILM 208
Query: 361 TDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 420
D D PG+ EE A + + P KDANE L+ A+ + + NA+
Sbjct: 209 FDMDEPGRKAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 261
Query: 421 LYPIMGLFNFRDYFDEI--DAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPN 477
+ G+ + D + T+G F TG LN++ GE+ +VT
Sbjct: 262 PWVPDGVVSAVSLKDRVREAMVKEETTGLLF---TGQPKLNDMTLGARGGEVIMVTSGSG 318
Query: 478 SGKSEWIDALICNINEHAGWKFVLCSMENKVRE----------HARKLLEKHIKKPFFEA 527
GKS ++ + + G K L +E V E H R +K +K E
Sbjct: 319 MGKSTFVRQQMLMWGK-GGAKVGLAMLEEAVEETVQDLMGLNNHVRLRQDKELKMRILED 377
Query: 528 NYGGSAERMTVEEFEQGKAWLSNT--FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 585
F++ L NT F L DS + AK A + G+ V
Sbjct: 378 G-----------RFDEWYDVLFNTDMFHLY----DSFAESQEDRLFAKLAYMVDGLDCNV 422
Query: 586 IDPYNELDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV-- 637
I LDH V + E + + +++T +K FA+ V + H +
Sbjct: 423 I----LLDHISIVVSGMEDNSDERKTIDRLMTKLKAFAKTKGVVVVVICHLKNPEKGKAH 478
Query: 638 --GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA- 694
G P ++ D+ GS D I + RN+ + + V +R ++ + G G A
Sbjct: 479 EEGRPVSITDLRGSGALRQLSDTIIALERNQQGDYPNL----VQLRVLKCRFTGDTGVAG 534
Query: 695 FLSYNRVTG 703
++YN+ TG
Sbjct: 535 HMAYNKETG 543
>gi|326536927|ref|YP_004306334.1| putative primase/helicase [Pseudomonas phage phiIBB-PF7A]
gi|318054503|gb|ADV35679.1| putative primase/helicase [Pseudomonas phage phiIBB-PF7A]
Length = 563
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 107/470 (22%), Positives = 186/470 (39%), Gaps = 51/470 (10%)
Query: 247 GHEVVIAFPYWRNGKLVNCKYRDFNKKFW-QEKDTEKVFYGLDDIEGESDIIIVEGEMDK 305
G +A Y + LV K RD +K+F+ K + +G G I++ EGE+D
Sbjct: 101 GESKQVANYYDMDRNLVAQKVRDRHKEFFIAGKMPKDGLFGKHLWTGGKKIVVTEGEIDC 160
Query: 306 LSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
L++ + G VS+P GA +D K N + Y Q +IIL D
Sbjct: 161 LTVAQIQGGKYPVVSIPRGA-------------EDAKKVCAANFE-YFNQFEQIILMFDM 206
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYP 423
D PG+A + E A + + P KD NE L+ A+ + + NA Y
Sbjct: 207 DAPGRAASLEAADVLPAGKVHIAVLP-------LKDPNECLLAGNSKAVIDQIWNAPKYV 259
Query: 424 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEW 483
G+ + + I A S G E+ GE+ +VT SGKS +
Sbjct: 260 PDGVVSALSLKERIKAKKVVASMPLVGPEELREMTKEIRG---GEVILVTSGSGSGKSTY 316
Query: 484 IDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 543
+ N+ ++ + +E V E + ++ H+ + N + E M F++
Sbjct: 317 VRQNTYNLFHYSKIAVGVAMLEESVEETVQDIVGLHMGCRVRQ-NPDETTEEMFDRAFDE 375
Query: 544 GKAWLSNTFSLI-----RCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+ SN L E+ L + +++D+ G R +V+D + +
Sbjct: 376 --IFASNMLHLYDAFAESAEDRLLARLNYMVDV-------EGCRVIVLDHVSIVVSAMDG 426
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPPNLYDISGSAHFIN 654
E + + +++T +K FA+ V+ + H + G P D+ GS
Sbjct: 427 ETDERKMIDRLMTKLKTFAKTKDVAVFVICHLKNPDKGKPHEEGRPVTATDLRGSGGLRQ 486
Query: 655 KCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 703
D I + RN+ + R R ++ + G G A ++ Y+++TG
Sbjct: 487 LSDTIIAVERNQQGSNPNLIR----FRLLKCRFTGETGIAGYMEYDKLTG 532
>gi|210621023|ref|ZP_03292408.1| hypothetical protein CLOHIR_00351 [Clostridium hiranonis DSM 13275]
gi|210155007|gb|EEA86013.1| hypothetical protein CLOHIR_00351 [Clostridium hiranonis DSM 13275]
Length = 448
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 119/247 (48%), Gaps = 19/247 (7%)
Query: 451 ISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---N 506
I TG+R L+ + + G LT+++G P +GKS I+ + + + G K +L S E
Sbjct: 170 IPTGFRKLDGVMDGFRYGTLTVLSGKPGAGKSTIINQFLASAID-VGQKAMLYSGELPSK 228
Query: 507 KVREHARKLL--EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPS 564
V + RK + E IKK ++ YG + + E + W+ L D + +
Sbjct: 229 TVMDWFRKCVVSECDIKK--YQTMYGAKFNAPSEQARELIREWIRG--KLFIYSEDVIAN 284
Query: 565 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624
K + + + L+HGVR VID L V + E++ + ++ +K A+ + +
Sbjct: 285 EKNMCGVIEHLWLKHGVRMFVIDNLMTLSMDNQVDKYESQKL--LVRDLKNLAKKYGLVI 342
Query: 625 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 684
VAHP++ +++D+SG++ +N CD + ++R D E G D + V ++
Sbjct: 343 ILVAHPKKTKE---RNIDMFDVSGASEIVNLCDYELFLNRVVDDERGT-DETFLTV--LK 396
Query: 685 NKVVGTI 691
N+V G +
Sbjct: 397 NRVTGKV 403
>gi|212671399|ref|YP_002308398.1| DNA primase/helicase [Kluyvera phage Kvp1]
gi|211997243|gb|ACJ14560.1| DNA primase/helicase [Kluyvera phage Kvp1]
Length = 569
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 122/489 (24%), Positives = 192/489 (39%), Gaps = 77/489 (15%)
Query: 244 KRHGHEVVIAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGE 302
K +G + +A Y G LV K RD NK+F + K + +G G I++ EGE
Sbjct: 103 KVNGEMLQVANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGE 162
Query: 303 MDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILA 360
+D L++ + G VS+P GA ++ KK + + Y Q IIL
Sbjct: 163 IDCLTVAQLQEGKYPVVSLPMGAQAA--KKTCAANYE------------YFDQFDEIILM 208
Query: 361 TDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 420
D D PG+ EE A + + P KDANE L+ A+ + + NA+
Sbjct: 209 FDMDEPGRKAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 261
Query: 421 LYPIMGLFNFRDYFDEI--DAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPN 477
+ G+ + D + T+G F TG LN++ GE+ +VT
Sbjct: 262 PWVPDGVVSAVSLKDRVREAMVKEETTGLLF---TGQPKLNDMTLGARGGEVIMVTSGSG 318
Query: 478 SGKSEWIDALICNINEHAGWKFVLCSMENKVRE----------HARKLLEKHIKKPFFEA 527
GKS ++ + + G K L +E V E H R +K +K E
Sbjct: 319 MGKSTFVRQQMLMWGK-GGAKVGLAMLEEAVEETVQDLMGLNNHVRLRQDKELKMQILED 377
Query: 528 NYGGSAERMTVEEFEQGKAWLSNT--FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 585
F++ L NT F L DS + AK A + G+ V
Sbjct: 378 G-----------RFDEWYDVLFNTDMFHLY----DSFAESQEDRLFAKLAYMVDGLDCNV 422
Query: 586 IDPYNELDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV-- 637
I LDH V + E + + +++T +K FA+ V + H +
Sbjct: 423 I----LLDHISIVVSGMEDNSDERKTIDRLMTKLKAFAKTKGVVVVVICHLKNPEKGKSH 478
Query: 638 --GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA- 694
G P ++ D+ GS D I + RN+ + + V +R ++ + G G A
Sbjct: 479 EEGRPVSITDLRGSGSLRQLSDTIIALERNQQGDYPNL----VQLRILKCRFTGDTGIAG 534
Query: 695 FLSYNRVTG 703
+ YN+ TG
Sbjct: 535 HMVYNKETG 543
>gi|432924944|ref|XP_004080672.1| PREDICTED: twinkle protein, mitochondrial-like [Oryzias latipes]
Length = 724
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 112/480 (23%), Positives = 194/480 (40%), Gaps = 96/480 (20%)
Query: 222 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG--------KLVNCKYRDFNKK 273
++ F IS TL+R V + +V FP W G KL++ + D +K
Sbjct: 206 IKTMFQITKISNATLKRFGVKLFKPTKSLV--FP-WVGGPDSSLKGIKLLSAQRTDGDKV 262
Query: 274 FWQEKDTEKV-----FYGLDDIE-GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSV 327
+ E K +GL I +S++++ E+D L++ +A L V++P G S +
Sbjct: 263 TYNEATFPKFSSYYCLFGLTLISRMDSEVVLTGHELDCLAVSQATGLPSVALPRGV-SCL 321
Query: 328 SKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 387
+P YL+Q R+ L GD ++ +R++ +RC VR
Sbjct: 322 PPILLP----------------YLEQFKRVTLWLGGDIRSWEASKIFSRKLAMKRCSLVR 365
Query: 388 WPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIM---------GLFNFRDYFDEID 438
P + P L+ +V+N L I+ + +F+ + D
Sbjct: 366 -PGEYQ---------------PQPLEALVQNKNLSRIIKGSIPASHKSIVSFKQLRE--D 407
Query: 439 AYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEH 494
Y + D+ W EL +L G ELT+ TG SGK+ +I L ++
Sbjct: 408 VYGELLNTDQVA-GVKWTRFPELNRILKGHRKGELTVFTGPTGSGKTTFISELALDLCMQ 466
Query: 495 AGWKFVLCSME-NKVR-------EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA 546
G + S E N VR + A + LE +++K F A ++FEQ
Sbjct: 467 -GVNTLWGSFEINNVRLAKIMLTQFAMERLEDNLEKYDFWA-----------DKFEQ--- 511
Query: 547 WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 606
L F + + IK VLD + AV + + ++ID + Q +S +
Sbjct: 512 -LPLYFMTFHGQQN----IKTVLDTMEHAVYLYDINHIIIDNLQFMMGQENLSIDKFAVQ 566
Query: 607 SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666
++ + ++FA + +CHV + HPR+ + I GSA + DN +++ +
Sbjct: 567 DHIIGVFRKFATNSSCHVTLIIHPRKEED--DRELQTASIFGSAKASQEADNVLILQEKK 624
>gi|410895163|ref|XP_003961069.1| PREDICTED: twinkle protein, mitochondrial-like [Takifugu rubripes]
Length = 715
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 111/487 (22%), Positives = 192/487 (39%), Gaps = 86/487 (17%)
Query: 207 EITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG------ 260
++ ED +L ++ F IS TL+R V R +V+ W G
Sbjct: 194 DLPEDEAQL------VKTMFQISKISNATLKRFGVRLFRPTKSLVLP---WFGGPDSSLK 244
Query: 261 --KLVNCKYRDFNKKFWQEKDTEKV-----FYGLDDI-EGESDIIIVEGEMDKLSMEEAG 312
KL++ + D + E K +GL + ++D+++ E+D +++ +A
Sbjct: 245 GVKLLSAQSTDSGSVAYNEATVPKSNSYYNLFGLHLVGRKDTDVVLTGHELDTMAVSQAT 304
Query: 313 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 372
L V++P G S + +P YL+Q R+ L GD ++
Sbjct: 305 GLPSVALPRGV-SCLPPILLP----------------YLEQFKRVTLWLGGDIRSWEASK 347
Query: 373 ELARRVGRERCWRVRWP---KKNDVDHF---KDANEVLMYLGPGALKEVVENAELYPIMG 426
+R++G RC VR P + ++ F K+ ++ P A K +V +L
Sbjct: 348 IFSRKLGLRRCSLVR-PGEYRPCPLEAFAMGKNFGHIIKSSIPAAHKSIVSFKQL----- 401
Query: 427 LFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSE 482
RD D Y + D+ W EL +L G ELT+ TG SGK+
Sbjct: 402 ----RD-----DVYGELMNTDQVA-GVKWMRFPELTRILKGHRKGELTVFTGPTGSGKTT 451
Query: 483 WIDALICNINEHAGWKFVLCSME-NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 541
+I + ++ G + S E N VR L K + F + +R+ +
Sbjct: 452 FISEVALDLCMQ-GVNTLWGSFEINNVR------LAKIMLTQF-------AMQRLE-DNL 496
Query: 542 EQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 599
EQ W N L +IK VLD + AV + + ++ID + Q +S
Sbjct: 497 EQYDFWADNFEELPLYFMTFHGQQNIKAVLDTMQHAVYMYDINHVIIDNLQFMMGQENLS 556
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNG 659
+ ++ ++FA +CHV + HPR+ + + I GSA + DN
Sbjct: 557 VDKFAVQDHIIGAFRKFATSSSCHVTLIIHPRKEED--DRELQMASIFGSAKASQEADNV 614
Query: 660 IVIHRNR 666
+++ +
Sbjct: 615 LILQEKK 621
>gi|388549268|gb|AFK66467.1| primase/helicase [Synechococcus phage S-CBP3]
Length = 535
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 111/474 (23%), Positives = 188/474 (39%), Gaps = 62/474 (13%)
Query: 251 VIAFPYW-RNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESD-IIIVEGEMDKLSM 308
V+ F Y+ +G L CK + NK F E + +G ++I EGE+D S
Sbjct: 95 VLRFHYFDSSGILKGCKVKTKNKVFSYEGEVPGTLFGQHLFPSSGKRVVITEGELDAASC 154
Query: 309 EE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 366
+E +G+ VS+P GA +KK+V + Y W L+ I+L D D
Sbjct: 155 QEVMSGW-PMVSLPGGA--GTAKKSV-------QRAYEW-----LQGYEEIVLFFDNDEA 199
Query: 367 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMG 426
G+ EE A + +C +KDA++ L P A++ + +A+ Y G
Sbjct: 200 GRKATEEAASVLPPGKCKIASLQGD-----YKDASDALSANDPEAVRRAIWDAKPYRPDG 254
Query: 427 LFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWID 485
+ + + + + T + L ++L+ + GEL +T GKS +
Sbjct: 255 IVDGKSLLELV-----TTPSPPADFDYPFSGLQDKLHGIRMGELVTITAGSGIGKSSFCR 309
Query: 486 AL---ICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFE 542
L + N E G+ ++E R A L+ + K + G ER T+ E
Sbjct: 310 ELATTLLNKGERVGY----LALEESNRRTALGLMSAAVGKSL----HLGEHERSTLTEAY 361
Query: 543 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH----QRPV 598
Q N F D S + + L G+ VI LDH +
Sbjct: 362 QATLANWNLFLF-----DGFGSFDPDIIYNRIEYLAAGLDTRVI----FLDHLSILLSGL 412
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQL----HNWVGEPPNLYDISGSAHFIN 654
E + + Q +T ++ + ++ V+H R+ ++ G L + GSA
Sbjct: 413 DGDERKMIDQTMTRLRSLVERTGIALFLVSHLRRTTSDQNHEEGARVTLGQLRGSAAIAQ 472
Query: 655 KCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF-LSYNRVTGEYMD 707
D I + RN+ + D VR ++N+ G +G A LSY+ T ++ +
Sbjct: 473 LSDGVIALERNQQSTSTGSD---TTVRVLKNRYSGEVGVACRLSYDLSTCKFYE 523
>gi|325272848|ref|ZP_08139185.1| DNA primase/helicase [Pseudomonas sp. TJI-51]
gi|324102053|gb|EGB99562.1| DNA primase/helicase [Pseudomonas sp. TJI-51]
Length = 483
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 127/508 (25%), Positives = 204/508 (40%), Gaps = 90/508 (17%)
Query: 228 ERLISAETLRR-NRVMQKRHGHEVVIAFPYWRN-GKLVNCKYRDFNKKFWQEKDTEKV-F 284
+R ++ ET R+ + + G V +A PY+ N G +V K RD +K F D K+
Sbjct: 14 KRKLTLETCRKFGYFVSEVRGRLVQVA-PYFDNSGVMVAQKLRDQDKGFAILGDGAKLTL 72
Query: 285 YGLDD-IEGESDIIIVEGEMDKLSMEEA--GFLNCVSVPDGAPSS--VSKKNVPSEEQDT 339
+G + G I++ EGE+D +S+ + VS+P+GAP++ ++N+
Sbjct: 73 FGQNLWASGGKKIVVTEGELDAMSVSQVQNNKWPVVSLPNGAPAARKAIQRNIE------ 126
Query: 340 KYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKD 399
YL+ +IL D D PG+ A+E A +C K KD
Sbjct: 127 ----------YLESFEEVILMFDMDEPGREAAQECAELFSPGKC-------KIATLSMKD 169
Query: 400 ANEVLMYLGPGALKEVVE---NAELYPIMGLFNFRDYFDEI------------DAYYHRT 444
ANE+L+ G +E+V NA+LY G+ N RD +EI D T
Sbjct: 170 ANELLV---AGREQEIVTAIWNAKLYRPDGVVNVRDLREEIRKALVMGLPWFLDPLTQLT 226
Query: 445 SGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504
G +G E+Y + G TGV GK++++ I + G + +
Sbjct: 227 YGRRYG---------EVYGLGAG-----TGV---GKTDFLTQQIAYDIQVLGERVGTIFL 269
Query: 505 ENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPS 564
E K E A+++ K K F T EE + L + D+
Sbjct: 270 EQKPTETAKRVAGKIAGKRFHVPK---ETAGWTDEELDAAVDALGENLVMY----DAFGE 322
Query: 565 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVS--QMLTMVKRFAQHHAC 622
+W D+ K V V + Y +DH ++ T E S Q++ + A
Sbjct: 323 TEW--DIVKRKVRYMAVSEGIKLIY--IDHLTAMADTADEKGSLEQIMKEMAGLANELGI 378
Query: 623 HVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNG----IVIHRNRDPEA-GPIDRVQ 677
+ F++H L G+P HF G + RD +A P+ R
Sbjct: 379 IITFISH---LTTPEGKPHEEGGRVTIRHFKGSRAIGFWSYFMFGLERDQQAEDPVVRQT 435
Query: 678 VCVRKVRNKVVG-TIGEA-FLSYNRVTG 703
R ++++ G GE +L+Y+R TG
Sbjct: 436 TTFRILKDRYTGQATGEVLYLAYDRDTG 463
>gi|429328448|gb|AFZ80208.1| DNA polymerase I family member protein [Babesia equi]
Length = 1713
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 107/429 (24%), Positives = 171/429 (39%), Gaps = 71/429 (16%)
Query: 293 ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLK 352
+ +++ EGE D +S+ + +S+P+G+ +S+ +P E + + YLW
Sbjct: 436 QKTVVLAEGEFDAMSIYQETGQPSLSLPNGS-NSLPVALLPRLE-NLDHIYLW------- 486
Query: 353 QASRIILATDGDPPGQALAEELARRVGRERCWRVR------WPKKNDVDHFKDANEVLMY 406
D D GQ+ A ++G +R VR P+ KDANE L
Sbjct: 487 --------MDFDAAGQSGITHFANKLGMQRTKIVRDISEKVNPEDEQERGAKDANECL-- 536
Query: 407 LGPGALKEVVENAELYPIMGLFNFRD----YFDEIDAYYHRTSGDEFGISTGWRALNELY 462
L + +ENA + NF D FDE+ + TSG E G L L
Sbjct: 537 LKGLKIAPYLENASPLVHSQILNFNDIRQSVFDEL-SNPKATSGVESLTLPGLSQL--LK 593
Query: 463 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME-NKVREHARKLLEKHIK 521
GEL++ TG SGK+ + L + G + S E N VR A+ +L +
Sbjct: 594 GHRRGELSVWTGSTGSGKTTLLSQLSLDYCVQ-GVSTLWGSFEINNVR-LAKTMLRQ--- 648
Query: 522 KPFFEANYGGSAERMTVEEFEQGKAWLSNTFS---LIRCENDSLPSIKWVLDLAKAAVLR 578
+ G ++EEF + ++ FS L + SI V+D AV
Sbjct: 649 -------FSGKNLETSIEEFN----YYADKFSELPLRFMKFHGSTSIDQVIDAMDYAVYV 697
Query: 579 HGVRGLVIDPYN-ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV 637
+ VR ++ID L Q + + + +RFA H HV V HPR+ +
Sbjct: 698 YDVRHIIIDNLQFMLSGQNSKPGELWDLQNSAIEKFRRFATHKNVHVSLVVHPRKEAD-- 755
Query: 638 GEPPNLYDISGSAHFINKCDNGIVIH----RNRDPEAGPIDRVQVCVRKVRNKVVGTIGE 693
G P L + GS + DN +++ NR C+ +N+ G +G
Sbjct: 756 GIPLGLSSVFGSVKSTQEADNVLILQNVVGENR------------CIDVKKNRFAGRLGR 803
Query: 694 AFLSYNRVT 702
++ V+
Sbjct: 804 VTFLFDPVS 812
>gi|37956767|gb|AAP34035.1| gene 4A [Enterobacteria phage T7]
Length = 566
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 120/500 (24%), Positives = 201/500 (40%), Gaps = 62/500 (12%)
Query: 226 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-V 283
R IS ET ++ + K G +A +NG +V+ K RD +K F +
Sbjct: 81 LTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDA 140
Query: 284 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 343
+G G I++ EGE+D L++ E G +S +KK + +
Sbjct: 141 LFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVXSLGHGASAAKKTCVANYE------ 194
Query: 344 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 403
Y Q +IIL D D G+ EE A+ + + P KDANE
Sbjct: 195 ------YFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKXRVAVLP-------CKDANEC 241
Query: 404 LMYLGPGALKEVVENAELY---PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALN 459
+ + E V NA + ++ + R+ E H +S + G+ +G +N
Sbjct: 242 HLNGHDREIMEQVWNAGPWIPDGVVSALSLRERIRE-----HLSSEESVGLLFSGCTGIN 296
Query: 460 E-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 518
+ GE+ +VT GKS ++ G K L +E V E A L+
Sbjct: 297 DKTLGARGGEVIMVTCGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGL 356
Query: 519 HIKKPFFEANYGGSAERMTVE--EFEQ--GKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 574
H + +++ S +R +E +F+Q + + ++TF L DS + LAK
Sbjct: 357 HNRVRLRQSD---SLKRKIIENGKFDQWFDELFGNDTFHLY----DSFAEAETDRLLAKL 409
Query: 575 AVLRHGVRGLVIDPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAH 629
A + G+ VI LDH V E + + ++T +K FA+ + + H
Sbjct: 410 AYMCSGLGCDVI----ILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICH 465
Query: 630 PR-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 684
+ + H G P ++ D+ GS D I + RN+ + + V VR ++
Sbjct: 466 LKNPDKGKAHE-EGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLVRILK 520
Query: 685 NKVVGTIGEA-FLSYNRVTG 703
+ G G A ++ YN+ TG
Sbjct: 521 CRFTGDTGIAGYMEYNKETG 540
>gi|242037151|ref|XP_002465970.1| hypothetical protein SORBIDRAFT_01g049170 [Sorghum bicolor]
gi|241919824|gb|EER92968.1| hypothetical protein SORBIDRAFT_01g049170 [Sorghum bicolor]
Length = 156
Score = 66.2 bits (160), Expect = 6e-08, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 11/92 (11%)
Query: 353 QASRIILATDGDPPGQALAEEL---------ARRVGRERCWRVRWPKK-NDVDHFKDANE 402
+ASRIILATD D PGQAL+ EL G+ R ++ + + + F D +
Sbjct: 62 KASRIILATDNDGPGQALSGELLLNLVKKDVGESSGQRRMIQILVKTQMSSCNTFFDL-Q 120
Query: 403 VLMYLGPGALKEVVENAELYPIMGLFNFRDYF 434
VLM+LG AL++V+E+ ELYPI G F+ +D+F
Sbjct: 121 VLMFLGRQALRKVIEDGELYPIRGSFSLKDFF 152
>gi|39654615|pdb|1Q57|A Chain A, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
gi|39654616|pdb|1Q57|B Chain B, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
gi|39654617|pdb|1Q57|C Chain C, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
gi|39654618|pdb|1Q57|D Chain D, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
gi|39654619|pdb|1Q57|E Chain E, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
gi|39654620|pdb|1Q57|F Chain F, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
gi|39654621|pdb|1Q57|G Chain G, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
Length = 503
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 113/474 (23%), Positives = 185/474 (39%), Gaps = 75/474 (15%)
Query: 258 RNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 316
+NG +V+ K RD +K F + +G G I++ EGE+D L++ E
Sbjct: 51 QNGNIVSQKVRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKY 110
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 111 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDEAGRKAVEEAAQ 158
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY---PIMGLFNFRDY 433
+ + P KDANE + + E V NA + ++ + R+
Sbjct: 159 VLPAGKVRVAVLP-------CKDANECHLNGHDREIMEQVWNAGPWIPDGVVSALSLRER 211
Query: 434 FDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNI 491
E H +S + G+ +G +N+ GE+ +VT S ++
Sbjct: 212 IRE-----HLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266
Query: 492 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE--EFEQGKAWLS 549
G K L +E V E A L+ H + +++ S +R +E +F+Q W
Sbjct: 267 GTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSD---SLKREIIENGKFDQ---WFD 320
Query: 550 NTF---------SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
F S E D L LAK A +R G+ VI LDH V
Sbjct: 321 ELFGNDTFHLYDSFAEAETDRL--------LAKLAYMRSGLGCDVI----ILDHISIVVS 368
Query: 601 T-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSA 650
E + + ++T +K FA+ + + H + + H G P ++ D+ GS
Sbjct: 369 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE-EGRPVSITDLRGSG 427
Query: 651 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 703
D I + RN+ + + V VR ++ + G G A ++ YN+ TG
Sbjct: 428 ALRQLSDTIIALERNQQGDMPNL----VLVRILKCRFTGDTGIAGYMEYNKETG 477
>gi|421487428|ref|ZP_15934859.1| hypothetical protein QWC_31919, partial [Achromobacter piechaudii
HLE]
gi|400194318|gb|EJO27423.1| hypothetical protein QWC_31919, partial [Achromobacter piechaudii
HLE]
Length = 238
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 25/187 (13%)
Query: 222 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKK--FWQEKD 279
+R + R ++ ET+ ++ ++ + FPY R G+ +N KYR + K QE
Sbjct: 12 VRDWLMSRGLTEETIAAFQIAEQERNGKAYAVFPYLREGEFINAKYRCVSDKKDMRQEGG 71
Query: 280 TEKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQD 338
E +G I+ ++ + I EGE+D ++ + G + +SV GA
Sbjct: 72 AEPCLFGWQLIDPKTRTVAIFEGEIDAMTGHQMG-IPSLSVNAGA--------------- 115
Query: 339 TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFK 398
+Q+L N L++ S I L D D GQ A E+A R+G ERC V + D K
Sbjct: 116 GNHQWLDNDWERLQRFSEIYLCYDNDEAGQKGAREVANRLGLERCKVVLF------DKAK 169
Query: 399 DANEVLM 405
DAN+ ++
Sbjct: 170 DANDYML 176
>gi|313892493|ref|ZP_07826082.1| DNA primase/helicase [Dialister microaerophilus UPII 345-E]
gi|313119072|gb|EFR42275.1| DNA primase/helicase [Dialister microaerophilus UPII 345-E]
Length = 537
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 127/556 (22%), Positives = 224/556 (40%), Gaps = 70/556 (12%)
Query: 177 CGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETL 236
C GS AL S S FS I++ D++ + P + + + +R I+ T
Sbjct: 11 CNTCGSHDALC--TYSDGSTYCFSCNTCIQKGNNDTVTI-PQDSLVISSLKKRGITKATC 67
Query: 237 RR-NRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYG--LDDIEGE 293
+ + K + +A Y NG+ + K R +K F E F+G L
Sbjct: 68 HKYGYYISKNAKTPMQVACYYDDNGECIGKKIRYPDKHFAVEGTISHRFFGQHLWANGHM 127
Query: 294 SDIIIVEGEMDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 351
++I EGE+D L++ + CVS+P+GA S+ K V E + +L
Sbjct: 128 KKLVITEGEIDCLTVSQLQENKYPCVSIPNGAASA---KKVFKENME-----------WL 173
Query: 352 KQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGA 411
+I+ D D G+ E++ + + P KD NE L+ G
Sbjct: 174 NTFEEVIVMFDMDEAGRKAVEDVQGLLKPRKLKIANLP-------LKDPNECLI---AGR 223
Query: 412 LKEVVE---NAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPG 467
+EV+ NA+ Y G+ N +D ++ I T EF T LN++ + G
Sbjct: 224 GQEVILAIWNAKAYKPDGIINGKDTWELISKAEEETKCYEFPWET--LPLNKMTLGMRKG 281
Query: 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 527
EL I+T GK+ +I + ++ K + +E ++ + L+ K +
Sbjct: 282 ELLILTAGTGVGKTTFIRQIAYDLGVKKKLKIGMLMLEENIKRTIKGLMSVASGKRLYIN 341
Query: 528 NYGGS---AERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA---VLRH-- 579
G S +R E G L F + EN + I++ + LA+ +L H
Sbjct: 342 RQGLSDKEYKRCFDEVMGNGNYILYEHFGSLSGEN-LMDKIRY-MTLAEQCDFIILDHIS 399
Query: 580 -GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV- 637
+ GL E D++R + + ++T ++ + + ++H R+L N
Sbjct: 400 IAISGL------EGDNERKL-------IDILMTQMRSLVEETGVGMLVISHLRRLSNEST 446
Query: 638 ----GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGE 693
G +L + GS D I + RN+ +A + R V +R ++N+ G G
Sbjct: 447 SHEEGGATSLSQLRGSGAIAQLADTVIGLERNQ--QAQGMQRNMVRIRVLKNRYTGETGI 504
Query: 694 A-FLSYNRVTGEYMDI 708
A +L Y++ T ++
Sbjct: 505 AGYLQYSKETDRLTEV 520
>gi|9634013|ref|NP_052087.1| DNA primase/helicase [Yersinia phage phiYeO3-12]
gi|6599004|emb|CAB63608.1| DNA primase/helicase [Yersinia phage phiYeO3-12]
Length = 566
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 113/470 (24%), Positives = 184/470 (39%), Gaps = 67/470 (14%)
Query: 258 RNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNC 316
+NG +V+ K RD +K F + L + G I++ EGE+D L++ E
Sbjct: 113 QNGSIVSQKVRDKDKNFKTTGSHKSDALFLKHLWSGGKKIVVTEGEIDALTVMELQDCKY 172
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 173 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDDAGRKAVEEAAQ 220
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 436
+ + P +KDANE + A+ E V NA + G+ + D
Sbjct: 221 VLPAGKVRVAVLP-------YKDANECHIMGEDKAILEQVWNANPWVPDGVVSALSLKDR 273
Query: 437 IDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEH 494
+ TS D G+ G + LN+ GE+ +VT GKS ++ +
Sbjct: 274 VKEAM--TSEDAVGLLFDGCQGLNDRTLGARGGEVIMVTSGSGMGKSTFVRQQALAWGKR 331
Query: 495 AGWKFVLCSMENKVREHARKLL----------EKHIKKPFFEANYGGSAERMTVEEFEQG 544
G + L +E V + + ++ +KK E G + E F
Sbjct: 332 MGKRVGLAMLEESVEDTIQDMMGLNNKVRLRQSDEVKKAIAED---GRFDEWYDELFGDD 388
Query: 545 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV-----S 599
L ++F+ E D L LAK A +R G+ VI LDH V
Sbjct: 389 TFHLYDSFA--EAEADRL--------LAKLAYMRTGLGCDVI----VLDHISIVVSASEE 434
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSAHFIN 654
E + + +++T +K FA+ + + H + + H G ++ D+ GS
Sbjct: 435 SDERKMIDRLMTKLKGFAKSTGVVLVVICHLKNPEKGKAHE-EGRAVSITDLRGSGALRQ 493
Query: 655 KCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 703
D I + RN+ + + V VR ++ + G G A ++ YNR TG
Sbjct: 494 LSDTIIALERNQQGDMPHL----VLVRLLKCRFTGDTGIAGYMEYNRETG 539
>gi|9634014|ref|NP_052088.1| helicase [Yersinia phage phiYeO3-12]
gi|6599005|emb|CAB63609.1| helicase [Yersinia phage phiYeO3-12]
Length = 504
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 113/470 (24%), Positives = 184/470 (39%), Gaps = 67/470 (14%)
Query: 258 RNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNC 316
+NG +V+ K RD +K F + L + G I++ EGE+D L++ E
Sbjct: 51 QNGSIVSQKVRDKDKNFKTTGSHKSDALFLKHLWSGGKKIVVTEGEIDALTVMELQDCKY 110
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 111 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDDAGRKAVEEAAQ 158
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 436
+ + P +KDANE + A+ E V NA + G+ + D
Sbjct: 159 VLPAGKVRVAVLP-------YKDANECHIMGEDKAILEQVWNANPWVPDGVVSALSLKDR 211
Query: 437 IDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEH 494
+ TS D G+ G + LN+ GE+ +VT GKS ++ +
Sbjct: 212 VKEAM--TSEDAVGLLFDGCQGLNDRTLGARGGEVIMVTSGSGMGKSTFVRQQALAWGKR 269
Query: 495 AGWKFVLCSMENKVREHARKLL----------EKHIKKPFFEANYGGSAERMTVEEFEQG 544
G + L +E V + + ++ +KK E G + E F
Sbjct: 270 MGKRVGLAMLEESVEDTIQDMMGLNNKVRLRQSDEVKKAIAED---GRFDEWYDELFGDD 326
Query: 545 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT--- 601
L ++F+ E D L LAK A +R G+ VI LDH V
Sbjct: 327 TFHLYDSFA--EAEADRL--------LAKLAYMRTGLGCDVI----VLDHISIVVSASEE 372
Query: 602 --ETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSAHFIN 654
E + + +++T +K FA+ + + H + + H G ++ D+ GS
Sbjct: 373 SDERKMIDRLMTKLKGFAKSTGVVLVVICHLKNPEKGKAHE-EGRAVSITDLRGSGALRQ 431
Query: 655 KCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 703
D I + RN+ + + V VR ++ + G G A ++ YNR TG
Sbjct: 432 LSDTIIALERNQQGDMPHL----VLVRLLKCRFTGDTGIAGYMEYNRETG 477
>gi|37956769|gb|AAP34037.1| gene 4B [Enterobacteria phage T7]
Length = 503
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 123/509 (24%), Positives = 199/509 (39%), Gaps = 80/509 (15%)
Query: 226 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-V 283
R IS ET ++ + K G +A +NG +V+ K RD +K F +
Sbjct: 18 LTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDA 77
Query: 284 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 343
+G G I++ EGE+D L++ E G +S +KK + +
Sbjct: 78 LFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVXSLGHGASAAKKTCVANYE------ 131
Query: 344 LWNCKMYLKQASRIILATDGDPPGQALAEELARRV--GRERCWRVRWPKKNDVDHFKDAN 401
Y Q +IIL D D G+ EE A+ + G+ R V KDAN
Sbjct: 132 ------YFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKXRV---------AVLPCKDAN 176
Query: 402 EVLMYLGPGALKEVVENAELY---PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRA 457
E + + E V NA + ++ + R+ E H +S + G+ +G
Sbjct: 177 ECHLNGHDREIMEQVWNAGPWIPDGVVSALSLRERIRE-----HLSSEESVGLLFSGCTG 231
Query: 458 LNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLL 516
+N+ GE+ +VT GKS ++ G K L +E V E A L+
Sbjct: 232 INDKTLGARGGEVIMVTCGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLI 291
Query: 517 EKHIKKPFFEANYGGSAERMTVE--EFEQGKAWLSNTF---------SLIRCENDSLPSI 565
H + +++ S +R +E +F+Q W F S E D L
Sbjct: 292 GLHNRVRLRQSD---SLKRKIIENGKFDQ---WFDELFGNDTFHLYDSFAEAETDRL--- 342
Query: 566 KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHH 620
LAK A + G+ VI LDH V E + + ++T +K FA+
Sbjct: 343 -----LAKLAYMCSGLGCDVI----ILDHISIVVSASGESDERKMIDNLMTKLKGFAKST 393
Query: 621 ACHVWFVAHPR-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR 675
+ + H + + H G P ++ D+ GS D I + RN+ + +
Sbjct: 394 GVVLVVICHLKNPDKGKAHE-EGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL-- 450
Query: 676 VQVCVRKVRNKVVGTIGEA-FLSYNRVTG 703
V VR ++ + G G A ++ YN+ TG
Sbjct: 451 --VLVRILKCRFTGDTGIAGYMEYNKETG 477
>gi|189427214|ref|YP_001949764.1| gp4A [Salmonella phage phiSG-JL2]
gi|189085867|gb|ACD75682.1| gp4A [Salmonella phage phiSG-JL2]
Length = 566
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 118/499 (23%), Positives = 193/499 (38%), Gaps = 66/499 (13%)
Query: 229 RLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGL 287
R IS ET ++ + K +A+ +NG +V+ K RD +K F + L
Sbjct: 83 RGISKETCQKAGYWLAKVDNRMYQVAYYRDQNGSIVSQKVRDKDKNFKTTGSHKSDALFL 142
Query: 288 DDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 346
+ G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 143 KHLWSGGKKIVVTEGEIDALTVMELQDCKYPVVSLGHGASAAKKTCAANYE--------- 193
Query: 347 CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY 406
Y Q +IIL D D G+ EE A+ + + P KDANE +
Sbjct: 194 ---YFDQFEQIILMFDMDDAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANECHIM 243
Query: 407 LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNV 464
A+ E + NA + G+ + D + TS D G+ G + LN+
Sbjct: 244 GEDKAILEQIWNANPWVPDGVVSALSLKDRVKEAM--TSEDAVGLLFDGCQGLNDRTLGA 301
Query: 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLL-------- 516
GE+ +VT GKS ++ + G + L +E V + + ++
Sbjct: 302 RGGEVVMVTSGSGMGKSTFVRQQALAWGKRMGKRVGLAMLEESVEDTIQDMMGLNNKVRL 361
Query: 517 --EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 574
+KK E G + E F L ++F+ E D L LAK
Sbjct: 362 RQSDEVKKAIAED---GRFDEWYDELFGDDTFHLYDSFA--EAEADRL--------LAKL 408
Query: 575 AVLRHGVRGLVIDPYNELDHQRPV-----SQTETEYVSQMLTMVKRFAQHHACHVWFVAH 629
A +R G+ VI LDH V E + + +++T +K FA+ + + H
Sbjct: 409 AYMRTGLGCDVI----VLDHISIVVSASEESDERKMIDRLMTKLKGFAKSTGVVLVVICH 464
Query: 630 PRQLHNWV----GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRN 685
+ G ++ D+ GS D I + RN+ + + V VR ++
Sbjct: 465 LKNPEKGKPHEEGRAVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLVRLLKC 520
Query: 686 KVVGTIGEA-FLSYNRVTG 703
+ G G A ++ YNR TG
Sbjct: 521 RFTGDTGIAGYMEYNRETG 539
>gi|408384981|gb|AFU62414.1| replicative DNA helicase [Escherichia phage EC6]
Length = 661
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 137/617 (22%), Positives = 244/617 (39%), Gaps = 75/617 (12%)
Query: 123 KLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCG---W 179
KLK+ G +G CA CP+C D+ + D+D +S CF G W
Sbjct: 6 KLKEAGQFVGHCA--------CPRCGSSDAGSI---YHHDDDSYSMT--CFSCNKGFPEW 52
Query: 180 KGSTSALVDNNRSQSSLKK--FSKMKTIREITEDSLELEPLGNELRAYFAERL------- 230
+V + S K F M + ++ E+ ++ ++ A ERL
Sbjct: 53 DFDKGQIVSTYSTGSDNKNRTFRGMD-LDDVKENLEAMDLKDRKIPAKVLERLGIKVDID 111
Query: 231 ----ISAE---TLRRNRVMQKRH-GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK 282
I A T +RN + H G+ V +P + + K +DF+ K
Sbjct: 112 SDGEIDAHFYPTYKRNEDGKLEHVGYRVRHRYPEDHPKEHLRGKLKDFSGGVGDIKGELA 171
Query: 283 VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAP-SSVSKKNVPSEEQDTKY 341
+F EG + + I EGEM+ + A ++ +++ D + + +VPS
Sbjct: 172 MFGSWIAPEGGNRLFIWEGEMECAT---AIYMTSLAIKDKSRRKNYCHVSVPS---GANI 225
Query: 342 QYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK-NDVDH---- 396
+ + + Y+ I L D D G +E A + E+ ++P+ D++
Sbjct: 226 KSIKDNYQYITSFDEIYLCFDNDEAGAKATKEAAGILPIEKVRLFQYPEGVKDLNEWWTK 285
Query: 397 -FKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW 455
+K+ + VL K+ + NA Y G+ NF D F+ A +R +
Sbjct: 286 FYKEKDTVLE-----GFKQRIYNAPRYCPAGIKNFADGFE---AMKNRGQIPLIPFPESF 337
Query: 456 RALNEL----YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511
LN L Y + GE+T + + GKS + +I + + + + +E+ E
Sbjct: 338 GDLNRLTYGGYGL--GEITTIAAPSSVGKSAYTREMIYSAWKETDYNIGVIPVEDTYEEL 395
Query: 512 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 571
L H+ K E Y + +E ++ A LS + ++ +L+
Sbjct: 396 MEMLCAIHLSKQISEIPY----DERDWDELKEAHAELSKGRRIHIVDHQGAIDQDNLLEF 451
Query: 572 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR--FAQHHACHVWFVAH 629
V + +++DP L R + E E +S++L KR +AQ + CHV A
Sbjct: 452 VDYLVNSLDCKIIILDPIT-LALSRSDTD-EEEVLSELLRRCKRYQYAQVNVCHVRKSAG 509
Query: 630 PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR---DPEAGPIDRVQVCVRKVRNK 686
++ ++ G+ DI GS + N I++ RN+ DP + ++++ + K
Sbjct: 510 GQKANSEGGDISE-EDIKGSGAYFQISMNNILLMRNKVDPDPVKKNLTKIKLTKCRRHGK 568
Query: 687 VVGTIGEAFLSYNRVTG 703
G G + YN TG
Sbjct: 569 STGIAGHTW--YNPDTG 583
>gi|403259693|ref|XP_003922337.1| PREDICTED: twinkle protein, mitochondrial [Saimiri boliviensis
boliviensis]
Length = 690
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 125/576 (21%), Positives = 223/576 (38%), Gaps = 82/576 (14%)
Query: 156 SLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITE----- 210
S SL++D+ + M A+ W+ +++ S SK + + E
Sbjct: 105 SFSLYIDKTTGCFLCMTSLAEGSWEDFQASVEGEGDGASEGLLLSKAPEVEDSEEVWRIW 164
Query: 211 -DSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGHEVVIAFPYWRNG---- 260
++ L+ L + A + I+ +TL+R V R +V FP++ G
Sbjct: 165 NRAVPLQELPDPEEVQLANTMFGLTKITDDTLKRFSVRYLRPARSLV--FPWFSPGGSGL 222
Query: 261 ---KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG-ESDIIIVEGEMDKLSMEEAG 312
KL+ K R + + + +GL I ++++++ E+D L++ ++
Sbjct: 223 RGLKLLEAKCRGDGVSYEETTIPQPSAYHNLFGLPLISRRDTEVVLTSRELDSLALSQST 282
Query: 313 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 372
L +++P G S + +P YL+Q RI+ D A+
Sbjct: 283 GLPTLTLPQGT-SCLPPALLP----------------YLEQFRRIVFWLGDDLRSWEAAK 325
Query: 373 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRD 432
AR++ +RC VR P + N L L ++ A + +FR
Sbjct: 326 LFARKLNPKRCSLVR-PGDQQPHPLEALNRGL------NLSRIIRTALPAWHKSIVSFRQ 378
Query: 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALI 488
+E+ S E W +L +L G ELT+ TG SGK+ +I
Sbjct: 379 LREEV---LGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYA 435
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548
++ G + S E AR +L + AER +E ++ W
Sbjct: 436 LDLCSQ-GVNTLWGSFEISNVRLARVMLTQF-------------AERRLEDELDKYDHW- 480
Query: 549 SNTF---SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 605
+N F L I+ V+D + AV + + +VID + +S
Sbjct: 481 ANRFEDLPLYFMTFHGQQGIRTVVDTMQHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAA 540
Query: 606 VSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665
++ + ++FA + CHV V HPR+ + + I GSA + DN ++I ++
Sbjct: 541 QDYIVGVFRKFATDNNCHVTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQD 597
Query: 666 RDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
R GP R +QV +N+ G +G L +N+
Sbjct: 598 RKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 629
>gi|423635713|ref|ZP_17611366.1| hypothetical protein IK7_02122 [Bacillus cereus VD156]
gi|401276903|gb|EJR82848.1| hypothetical protein IK7_02122 [Bacillus cereus VD156]
Length = 338
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 34/204 (16%)
Query: 225 YFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKK-FWQEKDTEKV 283
Y +R IS E R+ ++ R VVI + + NG+LVN KYR + K FW EKD + +
Sbjct: 137 YLGQRGISEEVQRQMKIGYDRFRQAVVIPW-FDTNGRLVNIKYRKISSKVFWYEKDGKPI 195
Query: 284 ---FYGLDDIEGESDI---IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 337
YGL + + +I + E E+D +S AG G + S N EQ
Sbjct: 196 GDLIYGLH-LAYKRNIKRAVYCEAEIDAMSFMTAGVF-------GLANGGSSFNQRKAEQ 247
Query: 338 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV-GRERCWRVRWPKKNDVDH 396
K +++ D DP G+ L +EL + + G+ R V
Sbjct: 248 ILK-----------SPIEELVIVADNDPAGEKLRKELEKYLNGKIRL------TNGYVRR 290
Query: 397 FKDANEVLMYLGPGALKEVVENAE 420
FKDANE L+ G +L VV+N E
Sbjct: 291 FKDANEALIKEGASSLISVVDNVE 314
>gi|189427215|ref|YP_001949765.1| gp4B [Salmonella phage phiSG-JL2]
gi|189085868|gb|ACD75683.1| gp4B [Salmonella phage phiSG-JL2]
Length = 504
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 118/499 (23%), Positives = 193/499 (38%), Gaps = 66/499 (13%)
Query: 229 RLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGL 287
R IS ET ++ + K +A+ +NG +V+ K RD +K F + L
Sbjct: 21 RGISKETCQKAGYWLAKVDNRMYQVAYYRDQNGSIVSQKVRDKDKNFKTTGSHKSDALFL 80
Query: 288 DDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 346
+ G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 81 KHLWSGGKKIVVTEGEIDALTVMELQDCKYPVVSLGHGASAAKKTCAANYE--------- 131
Query: 347 CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY 406
Y Q +IIL D D G+ EE A+ + + P KDANE +
Sbjct: 132 ---YFDQFEQIILMFDMDDAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANECHIM 181
Query: 407 LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNV 464
A+ E + NA + G+ + D + TS D G+ G + LN+
Sbjct: 182 GEDKAILEQIWNANPWVPDGVVSALSLKDRVKEAM--TSEDAVGLLFDGCQGLNDRTLGA 239
Query: 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLL-------- 516
GE+ +VT GKS ++ + G + L +E V + + ++
Sbjct: 240 RGGEVVMVTSGSGMGKSTFVRQQALAWGKRMGKRVGLAMLEESVEDTIQDMMGLNNKVRL 299
Query: 517 --EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 574
+KK E G + E F L ++F+ E D L LAK
Sbjct: 300 RQSDEVKKAIAED---GRFDEWYDELFGDDTFHLYDSFA--EAEADRL--------LAKL 346
Query: 575 AVLRHGVRGLVIDPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAH 629
A +R G+ VI LDH V E + + +++T +K FA+ + + H
Sbjct: 347 AYMRTGLGCDVI----VLDHISIVVSASEESDERKMIDRLMTKLKGFAKSTGVVLVVICH 402
Query: 630 PRQLHNWV----GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRN 685
+ G ++ D+ GS D I + RN+ + + V VR ++
Sbjct: 403 LKNPEKGKPHEEGRAVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLVRLLKC 458
Query: 686 KVVGTIGEA-FLSYNRVTG 703
+ G G A ++ YNR TG
Sbjct: 459 RFTGDTGIAGYMEYNRETG 477
>gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo]
gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis]
Length = 1613
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 110/431 (25%), Positives = 178/431 (41%), Gaps = 66/431 (15%)
Query: 288 DDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNC 347
++ G I+I EGE D + + + VS+P+G+ +S+ +P E ++ YLW
Sbjct: 383 ENASGPKSIVITEGEFDAMIVNQVTGRVAVSLPNGS-NSLPVALLPRLEH-LEHIYLW-- 438
Query: 348 KMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR----WPKKNDVDHF-KDANE 402
D D GQ E A ++G +R VR PK +D KDAN+
Sbjct: 439 -------------MDFDSAGQGGVEHFANKLGIQRTRVVRDIHERPKGSDSRGIPKDAND 485
Query: 403 VLMYLGPGALKEVVENAELYPIMGLFNFRD----YFDEIDAYYHRTSGDEFGI-STGWRA 457
V YL + +++A + NF D F+E+ G GI S
Sbjct: 486 V--YLRGLDISAYIDSATPMSHSQILNFNDIRQNVFEELS-----NPGATSGIASITMPG 538
Query: 458 LNELYNV-LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME-NKVREHARKL 515
L++L GEL++ TG SGK+ + L + G + S E N VR A+ +
Sbjct: 539 LSQLLKGHRRGELSVWTGATGSGKTTILSQLSLDYCMQ-GVSTLWGSFEINNVR-LAKTM 596
Query: 516 LEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFS---LIRCENDSLPSIKWVLDLA 572
L + + G ++E+F + ++ F+ L + SI V+D
Sbjct: 597 LRQ----------FSGRNLESSLEDFN----YYADKFAELPLRFMKFHGSTSIDQVIDAM 642
Query: 573 KAAVLRHGVRGLVIDPYNELDHQRPVSQTET-EYVSQMLTMVKRFAQHHACHVWFVAHPR 631
AV H VR ++ID + + E E ++ + +RFA HV V HPR
Sbjct: 643 DYAVYVHDVRHIIIDNLQFMLSGQNTRAGEVWEIQNKAIEKFRRFATQKNVHVSLVVHPR 702
Query: 632 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI 691
+ + G L + GS + DN ++I ++ E ID VRK N+ G +
Sbjct: 703 KEAD--GTALGLSSVFGSVKSTQEADN-VLILQSVLGENRSID-----VRK--NRFAGNL 752
Query: 692 GEAFLSYNRVT 702
G ++ V+
Sbjct: 753 GRVTFRFDPVS 763
>gi|269975276|gb|ACZ55500.1| putative phage DNA primase/helicase [Staphylococcus phage SA1]
Length = 661
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 138/617 (22%), Positives = 243/617 (39%), Gaps = 75/617 (12%)
Query: 123 KLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCG---W 179
KLK+ G IG CA CP+C D+ + D+D +S CF G W
Sbjct: 6 KLKEAGQFIGHCA--------CPRCGSSDAGSI---YHHDDDSYSMT--CFSCNKGFPEW 52
Query: 180 KGSTSALVDNNRSQSSLKK--FSKMKTIREITEDSLELEPLGNELRAYFAERL------- 230
+V + S K F M + ++ E+ ++ ++ A ERL
Sbjct: 53 DFDKGQIVSTYSTGSDNKNRTFRGMD-LDDVKENLEAMDLKDRKIPAKVLERLGIKVDID 111
Query: 231 ----ISAE---TLRRNRVMQKRH-GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK 282
I A T +RN + H G+ V +P + + K +DF+ K
Sbjct: 112 SDGEIDAHFYPTYKRNEDGKLEHVGYRVRHRYPEDHPKEHLRGKLKDFSGGVGDIKGELA 171
Query: 283 VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAP-SSVSKKNVPSEEQDTKY 341
+F EG + + I EGEM+ + A ++ +++ D + + +VPS
Sbjct: 172 MFGSWIAPEGGNRLFIWEGEMECAT---AIYMTSLAIKDKSRRKNYCHVSVPS---GANI 225
Query: 342 QYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK-NDVDH---- 396
+ + + Y+ I L D D G +E A + E+ ++P+ D++
Sbjct: 226 KSIKDNYQYITSFDEIYLCFDNDEAGAKATKEAAGILPIEKVRLFQYPEGVKDLNEWWTK 285
Query: 397 -FKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW 455
+K+ + VL K+ + NA Y G+ NF D F+ A +R +
Sbjct: 286 FYKEKDTVLE-----GFKQRIYNAPRYCPAGIKNFADGFE---AMKNRGQIPLIPFPESF 337
Query: 456 RALNEL----YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511
LN L Y + GE+T + + GKS + +I + + + + +E+ E
Sbjct: 338 GDLNRLTYGGYGL--GEITTIAAPSSVGKSAYTREMIYSAWKETDYNIGVIPVEDTYEEL 395
Query: 512 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 571
L H+ K E Y + +E + A LS + ++ +L+
Sbjct: 396 MEMLCAIHLSKQISEIPY----DERDWDELKGAHAELSKGRRIHIVDHQGAIDQDNLLEF 451
Query: 572 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR--FAQHHACHVWFVAH 629
V + +++DP L R + E E +S++L KR +AQ + CHV A
Sbjct: 452 VDYLVNSLDCKIIILDPIT-LALSRSDTD-EEEVLSELLRRCKRYQYAQVNVCHVRKSAG 509
Query: 630 PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR---DPEAGPIDRVQVCVRKVRNK 686
++ ++ G+ DI GS + N I++ RN+ DP + ++++ + K
Sbjct: 510 GQKANSEGGDISE-EDIKGSGAYFQISMNNILLMRNKVDPDPVKKNLTKIKLTKCRRHGK 568
Query: 687 VVGTIGEAFLSYNRVTG 703
G G + YN TG
Sbjct: 569 STGIAGHTW--YNPDTG 583
>gi|33340470|gb|AAQ14821.1| putative DNA primase/helicase [Salmonella phage FelixO1]
Length = 663
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 139/616 (22%), Positives = 242/616 (39%), Gaps = 73/616 (11%)
Query: 123 KLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCG---W 179
KLK+ G IG CA CP+C D+ + D+D +S CF G W
Sbjct: 8 KLKEAGQFIGHCA--------CPRCGSSDAGSI---YHHDDDSYSMT--CFSCNKGFPEW 54
Query: 180 KGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGN-ELRAYFAERL-------- 230
+V + S K + E +++LE L + ++ A ERL
Sbjct: 55 DFDKGQIVSTYSTGSDNKNRTFRGMDLEDVKENLEAMDLKDRKIPAKVLERLGIKVDIDS 114
Query: 231 ---ISAE---TLRRNRVMQKRH-GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKV 283
I A T +RN + H G+ V +P + + K +DF+ K +
Sbjct: 115 DGEIDAHFYPTYKRNEDGKLEHVGYRVRHRYPEDHPKEHLRGKLKDFSGGVGDIKGELAM 174
Query: 284 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAP-SSVSKKNVPSEEQDTKYQ 342
F EG + + I EGEM+ + A ++ +++ D + + +VPS +
Sbjct: 175 FGSWIAPEGGNRLFIWEGEMECAT---AIYMTSLAIKDKSRRKNYCHVSVPS---GANIK 228
Query: 343 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK-NDVDH----- 396
+ + Y+ I L D D G +E A + E+ ++P+ D++
Sbjct: 229 SIKDNYQYITSFDEIYLCFDNDEAGAKATKEAAGILPIEKVRLFQYPEGVKDLNEWWTKF 288
Query: 397 FKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWR 456
+K+ + VL K+ + NA Y G+ NF D F+ A +R +
Sbjct: 289 YKEKDTVLE-----GFKQRIYNAPRYCPAGIKNFADGFE---AMKNRGQIPLIPFPESFG 340
Query: 457 ALNEL----YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 512
LN L Y + GE+T + + GKS + +I + + + +E+ E
Sbjct: 341 DLNRLTYGGYGL--GEITTLAAPSSVGKSAYTREMIYTAWKDTDYNIGVIPVEDTYEELM 398
Query: 513 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLA 572
L H+ K E Y + +E + A LS + ++ +L+
Sbjct: 399 EMLCAIHLSKQISEIPY----DERDWDELKGAHAELSKGRRIHIVDHQGAIDQDNLLEFV 454
Query: 573 KAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR--FAQHHACHVWFVAHP 630
V + +++DP L R + E E +S++L KR +AQ + CHV A
Sbjct: 455 DYLVNSLDCKIIILDPIT-LALSRSDTD-EEEVLSELLRRCKRYQYAQVNVCHVRKSAGG 512
Query: 631 RQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR---DPEAGPIDRVQVCVRKVRNKV 687
++ ++ G+ DI GS + N I++ RN+ DP + ++++ + K
Sbjct: 513 QKANSEGGDISE-EDIKGSGAYFQISMNNILLMRNKVDPDPVKKNLTKIKLTKCRRHGKS 571
Query: 688 VGTIGEAFLSYNRVTG 703
G G + YN TG
Sbjct: 572 TGIAGHTW--YNPDTG 585
>gi|194015768|ref|ZP_03054384.1| DNA primase [Bacillus pumilus ATCC 7061]
gi|194013172|gb|EDW22738.1| DNA primase [Bacillus pumilus ATCC 7061]
Length = 333
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 97/219 (44%), Gaps = 36/219 (16%)
Query: 224 AYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWR--NGKLVNCKYRDF-NKKFWQEKD- 279
AY R IS + R V G VI WR N +L N KYR NK FW K
Sbjct: 136 AYLTNRGISEDVQREAGVGL--IGKTAVIP---WRLPNKRLANVKYRSTRNKAFWYAKGG 190
Query: 280 --TEKVFYGLDDIEGE--SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSE 335
++ YG++ + + ++ E E+D LS AG+ C G+ S K ++ ++
Sbjct: 191 LPIRELIYGIETVYADRAKTAVLAEAEIDALSWRTAGY--CGIATGGSKFSAEKADIIAQ 248
Query: 336 EQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVD 395
+ +YL I+ TD D G+ L +E+ ++ +VR +
Sbjct: 249 ---SSIEYL-------------IVITDNDEAGKKLRKEVELKM----RGKVRLAHGYITE 288
Query: 396 HFKDANEVLMYLGPGALKEVVENAELYPIMGLF-NFRDY 433
+KDANE+LM G GALK VV AE I F N R +
Sbjct: 289 GYKDANELLMAKGEGALKRVVSRAEAVSINVRFGNIRTF 327
>gi|158267603|ref|NP_944967.2| Putative phage DNA primase/helicase [Salmonella phage FelixO1]
gi|347466985|gb|AEO97518.1| DNA primase/helicase [Salmonella phage FO1a]
gi|408386478|gb|AFU63495.1| DNA primase/helicase [Salmonella phage SBA-1781]
gi|408386514|gb|AFU63526.1| DNA primase/helicase [Salmonella phage SPT-1]
Length = 661
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 139/616 (22%), Positives = 242/616 (39%), Gaps = 73/616 (11%)
Query: 123 KLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCG---W 179
KLK+ G IG CA CP+C D+ + D+D +S CF G W
Sbjct: 6 KLKEAGQFIGHCA--------CPRCGSSDAGSI---YHHDDDSYSMT--CFSCNKGFPEW 52
Query: 180 KGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGN-ELRAYFAERL-------- 230
+V + S K + E +++LE L + ++ A ERL
Sbjct: 53 DFDKGQIVSTYSTGSDNKNRTFRGMDLEDVKENLEAMDLKDRKIPAKVLERLGIKVDIDS 112
Query: 231 ---ISAE---TLRRNRVMQKRH-GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKV 283
I A T +RN + H G+ V +P + + K +DF+ K +
Sbjct: 113 DGEIDAHFYPTYKRNEDGKLEHVGYRVRHRYPEDHPKEHLRGKLKDFSGGVGDIKGELAM 172
Query: 284 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAP-SSVSKKNVPSEEQDTKYQ 342
F EG + + I EGEM+ + A ++ +++ D + + +VPS +
Sbjct: 173 FGSWIAPEGGNRLFIWEGEMECAT---AIYMTSLAIKDKSRRKNYCHVSVPS---GANIK 226
Query: 343 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK-NDVDH----- 396
+ + Y+ I L D D G +E A + E+ ++P+ D++
Sbjct: 227 SIKDNYQYITSFDEIYLCFDNDEAGAKATKEAAGILPIEKVRLFQYPEGVKDLNEWWTKF 286
Query: 397 FKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWR 456
+K+ + VL K+ + NA Y G+ NF D F+ A +R +
Sbjct: 287 YKEKDTVLE-----GFKQRIYNAPRYCPAGIKNFADGFE---AMKNRGQIPLIPFPESFG 338
Query: 457 ALNEL----YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 512
LN L Y + GE+T + + GKS + +I + + + +E+ E
Sbjct: 339 DLNRLTYGGYGL--GEITTLAAPSSVGKSAYTREMIYTAWKDTDYNIGVIPVEDTYEELM 396
Query: 513 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLA 572
L H+ K E Y + +E + A LS + ++ +L+
Sbjct: 397 EMLCAIHLSKQISEIPY----DERDWDELKGAHAELSKGRRIHIVDHQGAIDQDNLLEFV 452
Query: 573 KAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR--FAQHHACHVWFVAHP 630
V + +++DP L R + E E +S++L KR +AQ + CHV A
Sbjct: 453 DYLVNSLDCKIIILDPIT-LALSRSDTD-EEEVLSELLRRCKRYQYAQVNVCHVRKSAGG 510
Query: 631 RQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR---DPEAGPIDRVQVCVRKVRNKV 687
++ ++ G+ DI GS + N I++ RN+ DP + ++++ + K
Sbjct: 511 QKANSEGGDISE-EDIKGSGAYFQISMNNILLMRNKVDPDPVKKNLTKIKLTKCRRHGKS 569
Query: 688 VGTIGEAFLSYNRVTG 703
G G + YN TG
Sbjct: 570 TGIAGHTW--YNPDTG 583
>gi|17570806|ref|NP_523315.1| DNA primase/helicase [Enterobacteria phage T3]
gi|130906|sp|P20315.1|PRIM_BPT3 RecName: Full=DNA primase/helicase
gi|15697|emb|CAA35135.1| 4A [Enterobacteria phage T3]
gi|17384290|emb|CAC86278.1| DNA primase/helicase [Enterobacteria phage T3]
Length = 566
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 113/470 (24%), Positives = 183/470 (38%), Gaps = 67/470 (14%)
Query: 258 RNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNC 316
+NG +V+ K RD +K F + L + G I++ EGE+D L++ E
Sbjct: 113 QNGSIVSQKVRDKDKNFKTTGSHKSDALFLKHLWSGGKKIVVTEGEIDALTVMELQDCKY 172
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 173 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDDAGRKAVEEAAQ 220
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 436
+ + P KDANE + A+ E V NA + G+ + D
Sbjct: 221 VLPAGKVRVAVLP-------CKDANECHIMGEDKAILEQVWNANPWVPDGVVSALSLKDR 273
Query: 437 IDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEH 494
+ TS D G+ G + LN+ GE+ +VT GKS ++ +
Sbjct: 274 VKEAM--TSEDAVGLLFDGCQGLNDRTLGARGGEVVMVTSGSGMGKSTFVRQQALAWGKR 331
Query: 495 AGWKFVLCSMENKVREHARKLL----------EKHIKKPFFEANYGGSAERMTVEEFEQG 544
G + L +E V + + ++ +KK E G + E F
Sbjct: 332 MGKRVGLAMLEESVEDTIQDMMGLNNKVRLRQSDEVKKAIAE---DGRFDEWYDELFGDD 388
Query: 545 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT--- 601
L ++F+ E D L LAK A +R G+ VI LDH V
Sbjct: 389 TFHLYDSFA--EAEADRL--------LAKLAYMRTGLGCDVI----VLDHISIVVSASEE 434
Query: 602 --ETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSAHFIN 654
E + + +++T +K FA+ + + H + + H G ++ D+ GS
Sbjct: 435 SDERKMIDRLMTKLKGFAKSTGVVLVVICHLKNPEKGKAHE-EGRAVSITDLRGSGALRQ 493
Query: 655 KCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 703
D I + RN+ + + V VR ++ + G G A ++ YNR TG
Sbjct: 494 LSDTIIALERNQQGDMPNL----VLVRLLKCRFTGDTGIAGYMEYNRETG 539
>gi|351715591|gb|EHB18510.1| Twinkle protein, mitochondrial [Heterocephalus glaber]
Length = 959
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 130/574 (22%), Positives = 221/574 (38%), Gaps = 79/574 (13%)
Query: 156 SLSLFLDEDGFSAVWMCFRAKCGW---KGSTSALVDNNRSQSSLKKFSKMKT---IREIT 209
S SLF+D+ + M A+ W + S +D + L + + + +R I
Sbjct: 99 SFSLFIDKTTGRFLCMTSLAEGSWEDFQASVEGRMDGVKQGVLLSEAPETENSEEVRRIW 158
Query: 210 EDSLELEPLGNE-----LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG---- 260
+ ++ L L + R F ++ +TLRR RV R +V FP++ G
Sbjct: 159 DRAVPLWELPDSEEAQLARVMFGLTKVTDDTLRRFRVQYLRPARSLV--FPWFSQGSGLR 216
Query: 261 --KLVNCKYRDFNKKFWQEKDTEKVFY----GLDDIEG-ESDIIIVEGEMDKLSMEEAGF 313
KL+ + + + Y GL I + ++++ E+D L++ +A
Sbjct: 217 GLKLLGAEGHGDGVHYMETTIPRPGAYHNLFGLPLISRRDVEVVLTSRELDSLALSQATG 276
Query: 314 LNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEE 373
L +++P G S+ +P YL+Q RIIL D A+
Sbjct: 277 LPTLALPRGT-LSLPPALLP----------------YLEQFRRIILWLGDDLRSWEAAKL 319
Query: 374 LARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDY 433
AR++ +RC VR P + N L L ++ A + +FR
Sbjct: 320 FARKLNPKRCSLVR-PGDQQPRPLEALNRGL------NLSRILRTALPAWHKSIVSFRQL 372
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALIC 489
+E+ + E W +L +L G ELT+ TG SGK+ +I
Sbjct: 373 REEV---LGELTDVEQAAGIRWSRFPDLNRLLKGHRKGELTVFTGPTGSGKTTFISEYAL 429
Query: 490 NINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS 549
++ G + S E AR +L + G E E+ ++ W
Sbjct: 430 DLCTQ-GVNTLWGSFEISNVRLARVMLTQFAV---------GQLE----EQLDKYDVWAD 475
Query: 550 --NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVS 607
L SI++V+D + AV + V +VID + +S
Sbjct: 476 RFEDLPLYVMTFHGQQSIRFVIDTMQHAVYVYDVCHVVIDNLQFMMGHEQLSTDRIAAQD 535
Query: 608 QMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD 667
++ ++FA + CHV V HPR+ + + I GSA + DN I+I ++R
Sbjct: 536 YIVGAFRKFATENNCHVTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-ILILQDRK 592
Query: 668 PEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
GP R +QV +N+ G +G L +N+
Sbjct: 593 LVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 622
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 97/237 (40%), Gaps = 24/237 (10%)
Query: 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 526
GELT+ TG SGK+ +I ++ G + S E AR +L +
Sbjct: 683 GELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEISNVRLARVMLTQF------- 734
Query: 527 ANYGGSAERMTVEEFEQGKAWLS--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGL 584
+ R+ E+ ++ W L SI+ V+D + AV + V +
Sbjct: 735 -----AVGRLE-EQLDKYDEWADRFEDLPLYFMTFHGQQSIRSVIDTMQHAVYVYDVCHV 788
Query: 585 VIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLY 644
VID + +S ++ ++FA + CHV V HPR+ + +
Sbjct: 789 VIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATENNCHVTLVIHPRKEDD--DKELQTA 846
Query: 645 DISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
I GSA + DN I+I ++R GP R +QV +N+ G +G L +N+
Sbjct: 847 SIFGSAKASQEADN-ILILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 898
>gi|402760907|gb|AFQ96134.1| putative phage DNA primase/helicase [Enterobacteriaphage UAB_Phi87]
Length = 661
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 138/617 (22%), Positives = 243/617 (39%), Gaps = 75/617 (12%)
Query: 123 KLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCG---W 179
KLK+ G IG CA CP+C D+ + D+D +S CF G W
Sbjct: 6 KLKEAGQFIGHCA--------CPRCGSSDAGSI---YHHDDDSYSMT--CFSCNKGFPEW 52
Query: 180 KGSTSALVDNNRSQSSLKK--FSKMKTIREITEDSLELEPLGNELRAYFAERL------- 230
+V + S K F M + ++ E+ ++ ++ A ERL
Sbjct: 53 DFDKGQIVSTYSTGSDNKNRTFRGMD-LDDVKENLEAMDLKDRKIPAKVLERLGIKVDID 111
Query: 231 ----ISAE---TLRRNRVMQKRH-GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK 282
I A T +RN + H G+ V +P + + K +DF+ K
Sbjct: 112 SDGEIDAHFYPTYKRNEDGKLEHVGYRVRHRYPEDHPKEHLRGKLKDFSGGVGDIKGELA 171
Query: 283 VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAP-SSVSKKNVPSEEQDTKY 341
+F EG + + I EGEM+ + A ++ +++ D + + +VPS
Sbjct: 172 MFGSWIAPEGGNRLFIWEGEMECAT---AIYMTSLAIKDKSRRKNYCHVSVPS---GANI 225
Query: 342 QYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK-NDVDH---- 396
+ + + Y+ I L D D G +E A + E+ ++P+ D++
Sbjct: 226 KSIKDNYQYITSFDEIYLCFDNDEAGAKATKEAAGILPIEKVRLFQYPEGVKDLNEWWTK 285
Query: 397 -FKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW 455
+K+ + VL K+ + NA Y G+ NF D F+ A +R +
Sbjct: 286 FYKEKDTVLE-----GFKQRIYNAPRYCPAGIKNFADGFE---AMKNRGQIPLIPFPESF 337
Query: 456 RALNEL----YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511
LN L Y + GE+T + + GKS + +I + + + + +E+ E
Sbjct: 338 GDLNRLTYGGYGL--GEITTIAAPSSVGKSAYTREMIYSAWKETDYNIGVIPVEDTYEEL 395
Query: 512 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 571
L H+ K E Y + +E + A LS + ++ +L+
Sbjct: 396 MEMLCAIHLSKQISEIPY----DERDWDELKVAHAELSKGRRIHIVDHQGAIDQDNLLEF 451
Query: 572 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR--FAQHHACHVWFVAH 629
V + +++DP L R + E E +S++L KR +AQ + CHV A
Sbjct: 452 VDYLVNSLDCKIIILDPIT-LALSRSDTD-EEEVLSELLRRCKRYQYAQVNVCHVRKSAG 509
Query: 630 PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR---DPEAGPIDRVQVCVRKVRNK 686
++ ++ G+ DI GS + N I++ RN+ DP + ++++ + K
Sbjct: 510 GQKANSEGGDISE-EDIKGSGAYFQISMNNILLMRNKVDPDPVKKNLTKIKLTKCRRHGK 568
Query: 687 VVGTIGEAFLSYNRVTG 703
G G + YN TG
Sbjct: 569 STGIAGHTW--YNPDTG 583
>gi|397510280|ref|XP_003825527.1| PREDICTED: twinkle protein, mitochondrial [Pan paniscus]
Length = 684
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 123/575 (21%), Positives = 222/575 (38%), Gaps = 80/575 (13%)
Query: 156 SLSLFLDEDGFSAVWMCFRAKCGW---KGSTSALVDNNRSQSSLKK---FSKMKTIREIT 209
S SLF+D+ + M A+ W + S D R L K F + +R I
Sbjct: 99 SFSLFIDKTTGRFLCMTSLAEGSWEDFQASVEGRGDGAREGFLLSKAPEFEDSEEVRRIW 158
Query: 210 EDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGHEVVIAFPYWRNG---- 260
++ L L ++ A+ + ++ +TL+R V R +V FP++ G
Sbjct: 159 NRAIPLWELPDQEEVQLADTMFGLTRVTDDTLKRFSVRYLRPARSLV--FPWFSPGGSGL 216
Query: 261 ---KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG-ESDIIIVEGEMDKLSMEEAG 312
KL+ K + + + +GL I ++++++ E+D L++ ++
Sbjct: 217 RGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLISRRDAEVVLTSRELDSLALNQST 276
Query: 313 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 372
L +++P G + + +P YL+Q RI+ D A+
Sbjct: 277 GLPTLTLPRGT-TCLPPALLP----------------YLEQFRRIVFWLGDDLRSWEAAK 319
Query: 373 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRD 432
AR++ +RC+ VR P + N G L ++ A + +FR
Sbjct: 320 LFARKLNPKRCFLVR-PGDQQPRPLEALN------GGFNLSRILRTALPAWHKSIVSFRQ 372
Query: 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYNVL----PGELTIVTGVPNSGKSEWIDALI 488
+E+ S E W +L +L GELT+ TG SGK+ +I
Sbjct: 373 LREEV---LGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYA 429
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548
++ G + S E AR +L + AE ++ ++ W
Sbjct: 430 LDLCSQ-GVNTLWGSFEISNVRLARVMLTQF-------------AEGRLEDQLDKYDHWA 475
Query: 549 S--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 606
L SI+ V+D + AV + + ++ID + +S
Sbjct: 476 DRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQ 535
Query: 607 SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666
++ + ++FA + CHV V HPR+ + + I GSA + DN ++I ++R
Sbjct: 536 DYIIGVFRKFATDNNCHVTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDR 592
Query: 667 DPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
GP R +QV +N+ G +G L +N+
Sbjct: 593 KLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 623
>gi|145527666|ref|XP_001449633.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417221|emb|CAK82236.1| unnamed protein product [Paramecium tetraurelia]
Length = 992
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 100/478 (20%), Positives = 192/478 (40%), Gaps = 51/478 (10%)
Query: 226 FAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTE---- 281
AE+++S ET + R F Y +LV+CK R K + E
Sbjct: 247 LAEKVLSEETKQNIRSQLDNQFDN----FQY----ELVSCKIRAAGKDLKHIQKIEPMNA 298
Query: 282 -KVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDT 339
K +G+ ++ +S +I+ EGE D ++ + + +S+P G ++P+
Sbjct: 299 AKGIFGMHLLKQDSTQVILTEGEFDAMAAYQMTNIPAISLPYGI------NHIPA----- 347
Query: 340 KYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKD 399
YL ++ + II+ D D PG+ ++++AR++G R V+ N D+ KD
Sbjct: 348 ---YLIEWLDQFEKLNDIIIWVDDDNPGRINSQKIARKLGNARTRVVQPSLINPHDYPKD 404
Query: 400 ANEVLMYLGPGALKEVVENAELYP--IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 457
AN+ L + + + ++ L I +F+ + + G + T +
Sbjct: 405 ANDCLRFYADKVMTYIDQSKCLLKKNITQFTDFKQLTKNRILNFELSKGTQSQTFTTYN- 463
Query: 458 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 517
N + GE TI+TG SGK+ ++ L + + G + S E K A L
Sbjct: 464 -NTTKGLRTGEFTILTGPTGSGKTTFLSQLSLDFCKE-GITTLWGSFEIKTDRLAEHQLL 521
Query: 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 577
+ K + + +++FE N + + ++D + A+
Sbjct: 522 QAYKTDLIKQK---DLVDIAIQKFE-------NEIPIYYMNFYGSTDLDQIIDTIEYAIY 571
Query: 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV 637
+ V + +D + + + ++ +++ +R ++ H+ V HPR++
Sbjct: 572 EYNVTHVCLDNLQFMMGTQVGGNRKFDFQDEIIEKFRRLTSNNDIHLTLVIHPRKVDE-- 629
Query: 638 GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
E + I GSA + DN +I +NR P RV + + VG +G F
Sbjct: 630 NEDLTIASIFGSAKATQEADNVFII-QNR-----PRYRVFEIKKNRYDGEVGRVGLGF 681
>gi|47220632|emb|CAG06554.1| unnamed protein product [Tetraodon nigroviridis]
Length = 609
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 109/494 (22%), Positives = 192/494 (38%), Gaps = 86/494 (17%)
Query: 200 SKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRN 259
S + ++ ED ++L ++ F IS TL+R V + +V+ W
Sbjct: 127 SSSEAFTDLPEDEVQL------IKTMFQISKISNATLKRFGVRLFKPTKSLVLP---WFG 177
Query: 260 G--------KLVNCKYRDFNKKFWQEKDTEKV-----FYGLDDI-EGESDIIIVEGEMDK 305
G KL++ + D + E K +GL + ++++++ E+D
Sbjct: 178 GPESSLKGVKLISAQSADSGSITYNEATVPKSHSYYNLFGLHLVGRKDTEVVLTGHELDT 237
Query: 306 LSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDP 365
+++ +A L V++P G S + +P YL+Q R+ L GD
Sbjct: 238 MAVSQASGLPSVALPRGL-SCLPPILLP----------------YLEQFKRVTLWLGGDI 280
Query: 366 PGQALAEELARRVGRERCWRVRWPKK------NDVDHFKDANEVLMYLGPGALKEVVENA 419
++ +R++G RC VR P + + K+ ++ P A K +V
Sbjct: 281 RSWEASKIFSRKLGLRRCSLVR-PGEYRPCPLEALAAGKNLGHIIKSSIPAAHKSIVSFK 339
Query: 420 ELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL----PGELTIVTGV 475
+L RD D Y + D+ W EL +L GELT+ TG
Sbjct: 340 QL---------RD-----DVYGELVNTDQVA-GVRWVRFPELTRILKGHRKGELTVFTGP 384
Query: 476 PNSGKSEWIDALICNINEHAGWKFVLCSME-NKVREHARKLLEKHIKKPFFEANYGGSAE 534
SGK+ +I + ++ G + S E N VR L K + F + +
Sbjct: 385 TGSGKTTFISEVALDLCMQ-GVNTLWGSFEINNVR------LAKIMLTQF-------AVQ 430
Query: 535 RMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL 592
R+ E EQ W L +IK VLD + AV + + ++ID +
Sbjct: 431 RLE-ENLEQYDFWADKFEELPLYFMTFHGQQNIKTVLDTMQHAVYMYDINHVIIDNLQFM 489
Query: 593 DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHF 652
Q +S + ++ ++FA +CHV + HPR+ + + I GSA
Sbjct: 490 MGQENLSVDKFAVQDHIIGAFRKFATSSSCHVTLIIHPRKEED--DRELQMASIFGSAKA 547
Query: 653 INKCDNGIVIHRNR 666
+ DN +++ +
Sbjct: 548 SQEADNVLILQEKK 561
>gi|301103400|ref|XP_002900786.1| twinkle protein, putative [Phytophthora infestans T30-4]
gi|262101541|gb|EEY59593.1| twinkle protein, putative [Phytophthora infestans T30-4]
Length = 666
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 28/202 (13%)
Query: 295 DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA 354
++++ EGE D +++ +A + VS+P+G S+ +P L++
Sbjct: 240 ELVLTEGEFDAMAVHQATGMAAVSLPNGC-QSLPPSVLP----------------LLERF 282
Query: 355 SRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKE 414
RI L D D GQ+ E+ A ++G RC+ VR P KDAN+ L L
Sbjct: 283 KRIYLWMDNDASGQSNVEKFAAKLGMARCYIVRMPANAASSSIKDANDALR--ADLDLTA 340
Query: 415 VVENAELYPIMGLFNF----RDYFDEIDAYYHRTSGDEFGISTGWRALNELYNV-LPGEL 469
+V AE+ P + F RD ++EI + G + S + +LN L GE+
Sbjct: 341 IVNAAEIMPHTQITTFEELRRDVYEEI-VNPLKACGVQ---SRAFPSLNRLMKGHRMGEV 396
Query: 470 TIVTGVPNSGKSEWIDALICNI 491
T++TG GK+ ++ L ++
Sbjct: 397 TVLTGPTGCGKTTFLSQLSLDL 418
>gi|17570807|ref|NP_523316.1| helicase [Enterobacteria phage T3]
gi|15698|emb|CAA35136.1| 4B [Enterobacteria phage T3]
gi|17384291|emb|CAC86279.1| helicase [Enterobacteria phage T3]
Length = 504
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 113/470 (24%), Positives = 183/470 (38%), Gaps = 67/470 (14%)
Query: 258 RNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNC 316
+NG +V+ K RD +K F + L + G I++ EGE+D L++ E
Sbjct: 51 QNGSIVSQKVRDKDKNFKTTGSHKSDALFLKHLWSGGKKIVVTEGEIDALTVMELQDCKY 110
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 111 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDDAGRKAVEEAAQ 158
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 436
+ + P KDANE + A+ E V NA + G+ + D
Sbjct: 159 VLPAGKVRVAVLP-------CKDANECHIMGEDKAILEQVWNANPWVPDGVVSALSLKDR 211
Query: 437 IDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEH 494
+ TS D G+ G + LN+ GE+ +VT GKS ++ +
Sbjct: 212 VKEAM--TSEDAVGLLFDGCQGLNDRTLGARGGEVVMVTSGSGMGKSTFVRQQALAWGKR 269
Query: 495 AGWKFVLCSMENKVREHARKLL----------EKHIKKPFFEANYGGSAERMTVEEFEQG 544
G + L +E V + + ++ +KK E G + E F
Sbjct: 270 MGKRVGLAMLEESVEDTIQDMMGLNNKVRLRQSDEVKKAIAE---DGRFDEWYDELFGDD 326
Query: 545 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT--- 601
L ++F+ E D L LAK A +R G+ VI LDH V
Sbjct: 327 TFHLYDSFA--EAEADRL--------LAKLAYMRTGLGCDVI----VLDHISIVVSASEE 372
Query: 602 --ETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSAHFIN 654
E + + +++T +K FA+ + + H + + H G ++ D+ GS
Sbjct: 373 SDERKMIDRLMTKLKGFAKSTGVVLVVICHLKNPEKGKAHE-EGRAVSITDLRGSGALRQ 431
Query: 655 KCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 703
D I + RN+ + + V VR ++ + G G A ++ YNR TG
Sbjct: 432 LSDTIIALERNQQGDMPNL----VLVRLLKCRFTGDTGIAGYMEYNRETG 477
>gi|149926830|ref|ZP_01915089.1| replicative DNA helicase [Limnobacter sp. MED105]
gi|149824382|gb|EDM83600.1| replicative DNA helicase [Limnobacter sp. MED105]
Length = 461
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 119/283 (42%), Gaps = 38/283 (13%)
Query: 434 FDEIDAYYHR-TSGDEFGISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEWIDALICNI 491
+ ID YHR ++ D GISTG+ L+ + + PG+L IV G P+ GK+ A NI
Sbjct: 180 VERIDELYHRDSTSDITGISTGFVDLDGKTSGLQPGDLIIVAGRPSMGKT----AFSLNI 235
Query: 492 NEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA- 546
EH G + SME + A +LL GS R+ G+
Sbjct: 236 GEHVAVEEGHAVAVFSMEMGATQLAMRLL--------------GSVGRLDQHRLRTGRLT 281
Query: 547 ---WLSNTFSLIRCEN-----DSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQR 596
W T+++ + +N D P++ + A+ L G GLVI Y +L
Sbjct: 282 DEDWPRLTYAVEKMQNAQLFIDETPALSSMEVRARCRRLARQCGQLGLVIIDYLQLMGSS 341
Query: 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 655
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 SPGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 401
Query: 656 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
D + I+R+ +P++ ++ + K RN +GT+ FL
Sbjct: 402 ADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGTVRVTFL 444
>gi|301618744|ref|XP_002938766.1| PREDICTED: twinkle protein, mitochondrial-like [Xenopus (Silurana)
tropicalis]
Length = 677
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 102/426 (23%), Positives = 177/426 (41%), Gaps = 77/426 (18%)
Query: 293 ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLK 352
E++++I GE+D L++ ++ + +++P GA S + +P YL+
Sbjct: 273 ETEVVITNGEVDCLAIHQSTGVTTLALPRGA-SCLPPVLLP----------------YLE 315
Query: 353 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGAL 412
Q RIIL D ++ AR++ +RC +R P + N+ L +
Sbjct: 316 QFKRIILWLGDDLRSWEASKLFARKLNMKRCSLIR-PGDKQPSPLQALNDGL------NI 368
Query: 413 KEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----E 468
++++ + + +FR +E+ + + D+ W EL +L G E
Sbjct: 369 TKILKASLPASHKSIISFRQLREEV--FGQLENADQVA-GVKWARFPELNKLLKGHRKGE 425
Query: 469 LTIVTGVPNSGKSEWI-----DALICNINEHAGWKFVLCSME-NKVR-------EHARKL 515
LT+ TG SGK+ +I D I +N G S E N VR + A +
Sbjct: 426 LTVFTGPTGSGKTTFISEYALDLCIQGVNTLWG------SFEINNVRLAKIMLTQFALQR 479
Query: 516 LEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA 575
LE+ + K Y A+R FE L F + + IK V+D + A
Sbjct: 480 LEEQLDK------YDEWADR-----FED----LPLYFMTFHGQQN----IKSVIDTMQHA 520
Query: 576 VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN 635
V + + ++ID + Q + M+ ++FA + CHV V HPR+ +
Sbjct: 521 VYMYDITHVIIDNLQFMMGQENLYTDRFAAQDYMVGAFRKFATDNNCHVTVVIHPRKEDD 580
Query: 636 WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEA 694
+ I GSA + DN ++I ++R GP R +QV +N+ G +G
Sbjct: 581 --DKELQTSSIFGSAKASQEADN-VLILQDRKLVTGPGKRHLQV----AKNRFDGDVGVF 633
Query: 695 FLSYNR 700
L +N+
Sbjct: 634 SLEFNK 639
>gi|307243368|ref|ZP_07525528.1| putative replicative DNA helicase [Peptostreptococcus stomatis DSM
17678]
gi|306493260|gb|EFM65253.1| putative replicative DNA helicase [Peptostreptococcus stomatis DSM
17678]
Length = 461
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 139/295 (47%), Gaps = 39/295 (13%)
Query: 416 VENAELYPIMGLFNFRDYFDEI--DAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIV 472
+EN E+ I +F+ + D++ DA D G+ TG++ L+++ N L G LTI+
Sbjct: 132 IEN-EVKSISDIFSEKGTVDDLILDASEIDLIDDRDGLKTGFKNLDKVLNGLKFGTLTIL 190
Query: 473 TGVPNSGKSEWIDALICNINEHAGWKFVLCSME----NKVR------EHARKLLE-KHIK 521
TG P+SGKS ++ +I N +G K + S E N +R + L E K +
Sbjct: 191 TGEPSSGKSTLLNQIIAE-NISSGNKAFIYSGELTGSNVLRWFIDTVANVNDLQEYKSMG 249
Query: 522 KPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV 581
++ AN G + ++E+ + + ++ N EN S PSI + + V
Sbjct: 250 GTYYSANNHG---QYAIKEWIKDRLFIFN-------ENKS-PSISNIGMTIEYLARVKNV 298
Query: 582 RGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG--- 638
+ +ID +D + E E ++ ++K A+ + V VAHPR+ + +
Sbjct: 299 KLFIIDNLMMIDRGQF---EEFEKQKELAKILKNLAKKYKISVILVAHPRKKQSNLSLKN 355
Query: 639 --EPPNLYDISGSAHFINKCDNGIVIHRN--RDPEAGPIDRVQVCVRKVRNKVVG 689
E +++D+SG++ +N D I+I R+ D D ++ V ++N++ G
Sbjct: 356 TKESYHMHDVSGASEVVNLADYEILISRDIGEDKNGNKYDTTKIIV--LKNRITG 408
>gi|39725942|ref|NP_068602.2| twinkle protein, mitochondrial isoform A [Homo sapiens]
gi|74752111|sp|Q96RR1.1|PEO1_HUMAN RecName: Full=Twinkle protein, mitochondrial; AltName:
Full=Progressive external ophthalmoplegia 1 protein;
AltName: Full=T7 gp4-like protein with
intramitochondrial nucleoid localization; AltName:
Full=T7-like mitochondrial DNA helicase; Flags:
Precursor
gi|14582616|gb|AAK69558.1|AF292004_1 putative T7-like mitochondrial DNA helicase [Homo sapiens]
gi|119570179|gb|EAW49794.1| progressive external ophthalmoplegia 1, isoform CRA_b [Homo
sapiens]
gi|170560895|gb|ACB21043.1| chromosome 10 open reading frame 2 [Homo sapiens]
gi|311349658|gb|ADP92014.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349660|gb|ADP92015.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349662|gb|ADP92016.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349664|gb|ADP92017.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349666|gb|ADP92018.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349668|gb|ADP92019.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349670|gb|ADP92020.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349672|gb|ADP92021.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349674|gb|ADP92022.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349676|gb|ADP92023.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349678|gb|ADP92024.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349680|gb|ADP92025.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349682|gb|ADP92026.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349684|gb|ADP92027.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349686|gb|ADP92028.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349688|gb|ADP92029.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349690|gb|ADP92030.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349692|gb|ADP92031.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349694|gb|ADP92032.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349696|gb|ADP92033.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349698|gb|ADP92034.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349700|gb|ADP92035.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349702|gb|ADP92036.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349704|gb|ADP92037.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349706|gb|ADP92038.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349708|gb|ADP92039.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349710|gb|ADP92040.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349712|gb|ADP92041.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349714|gb|ADP92042.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349716|gb|ADP92043.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349718|gb|ADP92044.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349720|gb|ADP92045.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349722|gb|ADP92046.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349724|gb|ADP92047.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349726|gb|ADP92048.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349728|gb|ADP92049.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349730|gb|ADP92050.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349732|gb|ADP92051.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349734|gb|ADP92052.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349736|gb|ADP92053.1| mitochondrial twinkle protein [Homo sapiens]
Length = 684
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 123/575 (21%), Positives = 222/575 (38%), Gaps = 80/575 (13%)
Query: 156 SLSLFLDEDGFSAVWMCFRAKCGW---KGSTSALVDNNRSQSSLKK---FSKMKTIREIT 209
S SLF+D+ + M A+ W + S D R L K F + +R I
Sbjct: 99 SFSLFIDKTTGHFLCMTSLAEGSWEDFQASVEGRGDGAREGFLLSKAPEFEDSEEVRRIW 158
Query: 210 EDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGHEVVIAFPYWRNG---- 260
++ L L ++ A+ + ++ +TL+R V R +V FP++ G
Sbjct: 159 NRAIPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPARSLV--FPWFSPGGSGL 216
Query: 261 ---KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG-ESDIIIVEGEMDKLSMEEAG 312
KL+ K + + + +GL I ++++++ E+D L++ ++
Sbjct: 217 RGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLISRRDAEVVLTSRELDSLALNQST 276
Query: 313 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 372
L +++P G + + +P YL+Q RI+ D A+
Sbjct: 277 GLPTLTLPRGT-TCLPPALLP----------------YLEQFRRIVFWLGDDLRSWEAAK 319
Query: 373 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRD 432
AR++ +RC+ VR P + N G L ++ A + +FR
Sbjct: 320 LFARKLNPKRCFLVR-PGDQQPRPLEALN------GGFNLSRILRTALPAWHKSIVSFRQ 372
Query: 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYNVL----PGELTIVTGVPNSGKSEWIDALI 488
+E+ S E W +L +L GELT+ TG SGK+ +I
Sbjct: 373 LREEV---LGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYA 429
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548
++ G + S E AR +L + AE ++ ++ W
Sbjct: 430 LDLCSQ-GVNTLWGSFEISNVRLARVMLTQF-------------AEGRLEDQLDKYDHWA 475
Query: 549 S--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 606
L SI+ V+D + AV + + ++ID + +S
Sbjct: 476 DRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQ 535
Query: 607 SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666
++ + ++FA + CHV V HPR+ + + I GSA + DN ++I ++R
Sbjct: 536 DYIIGVFRKFATDNNCHVTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDR 592
Query: 667 DPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
GP R +QV +N+ G +G L +N+
Sbjct: 593 KLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 623
>gi|348531915|ref|XP_003453453.1| PREDICTED: twinkle protein, mitochondrial-like [Oreochromis
niloticus]
Length = 699
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 108/493 (21%), Positives = 199/493 (40%), Gaps = 94/493 (19%)
Query: 205 IREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW------- 257
+ ++ ED +L ++ F IS TL++ V + +V FP++
Sbjct: 170 LTDLPEDEAQL------IKTMFQITKISNATLKKFGVRLFKPTKSLV--FPWFGGPDSSL 221
Query: 258 RNGKLVNCKYRDFNKKFWQEKDTEKV-----FYGLDDI-EGESDIIIVEGEMDKLSMEEA 311
+ KL++ + + +K + E K +GL + +S++++ E D +++ +A
Sbjct: 222 KGVKLLSAQRTETDKVTYNEATVPKSNSYYNLFGLPLVGRLDSEVVVTGHEFDTMAVSQA 281
Query: 312 GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALA 371
L V++P G S + +P YL+Q R+ L GD +
Sbjct: 282 TGLPSVALPRGV-SCLPPILLP----------------YLEQFKRVTLWLGGDIRSWEAS 324
Query: 372 EELARRVGRERCWRVRWPKK------NDVDHFKDANEVLMYLGPGALKEVVENAELYPIM 425
+ +R++G RC VR P + + K+ + ++ P A K +V +L
Sbjct: 325 KSFSRKLGIRRCSLVR-PGEYRPCAVEALARGKNLSNIIKASIPAAHKSIVSFKQLRE-- 381
Query: 426 GLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL----PGELTIVTGVPNSGKS 481
D Y + D+ W EL +L GELT+ TG SGK+
Sbjct: 382 ------------DVYGELVNTDQVA-GVKWTRFPELNRILKGHRKGELTVFTGPTGSGKT 428
Query: 482 EWIDALICNINEHAGWKFVLCSME-NKVR-------EHARKLLEKHIKKPFFEANYGGSA 533
+I L ++ G + S E N VR + A + LE++++ F A
Sbjct: 429 TFISELALDLCMQ-GVNTLWGSFEINNVRLAKIMLTQFAMQRLEENLEHYDFWA------ 481
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
++FE+ L F + + IK VLD + AV + + +VID +
Sbjct: 482 -----DKFEE----LPLYFMTFHGQQN----IKTVLDTMQHAVYLYDINHVVIDNLQFMM 528
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
Q +S + ++ + ++FA + +CHV + HPR+ + I GSA
Sbjct: 529 GQENLSVDKFAVQDHIIGVFRKFATNSSCHVTLIIHPRKEED--DRELQTASIFGSAKAS 586
Query: 654 NKCDNGIVIHRNR 666
+ DN +++ +
Sbjct: 587 QEADNVLILQEKK 599
>gi|238801841|ref|YP_002922891.1| putative phage DNA primase/helicase [Escherichia phage wV8]
gi|216263054|gb|ACJ71922.1| putative phage DNA primase/helicase [Escherichia phage wV8]
Length = 661
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 137/617 (22%), Positives = 243/617 (39%), Gaps = 75/617 (12%)
Query: 123 KLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCG---W 179
KLK+ G +G CA CP+C D+ + D+D +S CF G W
Sbjct: 6 KLKEAGQFVGHCA--------CPRCGSSDAGSI---YHHDDDSYSMT--CFSCNKGFPEW 52
Query: 180 KGSTSALVDNNRSQSSLKK--FSKMKTIREITEDSLELEPLGNELRAYFAERL------- 230
+V + S K F M + ++ E+ ++ ++ A ERL
Sbjct: 53 DFDKGQIVSTYSTGSDNKNRTFRGMD-LDDVKENLEAMDLKDRKIPAKVLERLGIKVDID 111
Query: 231 ----ISAE---TLRRNRVMQKRH-GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK 282
I A T +RN + H G+ V +P + + K +DF+ K
Sbjct: 112 SDGEIDAHFYPTYKRNEDGKLEHVGYRVRHRYPEDHPKEHLRGKLKDFSGGVGDIKGELA 171
Query: 283 VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAP-SSVSKKNVPSEEQDTKY 341
+F EG + + I EGEM+ + A ++ +++ D + + +VPS
Sbjct: 172 MFGSWIAPEGGNRLFIWEGEMECAT---AIYMTSLAIKDKSRRKNYCHVSVPS---GANI 225
Query: 342 QYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK-NDVDH---- 396
+ + + Y+ I L D D G +E A + E+ ++P+ D++
Sbjct: 226 KSIKDNYQYITSFDEIYLCFDNDEAGAKATKEAAGILPIEKVRLFQYPEGVKDLNEWWTK 285
Query: 397 -FKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW 455
+K+ + VL K+ + NA Y G+ NF D F+ A +R +
Sbjct: 286 FYKEKDTVLE-----GFKQRIYNAPRYCPAGIKNFADGFE---AMKNRGQIPLIPFPESF 337
Query: 456 RALNEL----YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511
LN L Y + GE+T + + GKS + +I + + + +E+ E
Sbjct: 338 GDLNRLTYGGYGL--GEITTLAAPSSVGKSAYTREMIYTAWKDTDYNIGVIPVEDTYEEL 395
Query: 512 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 571
L H+ K E Y + +E ++ A LS + ++ +L+
Sbjct: 396 MEMLCAIHLSKQISEIPY----DERDWDELKEAHAELSKGRRIHIVDHQGAIDQDNLLEF 451
Query: 572 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR--FAQHHACHVWFVAH 629
V + +++DP L R + E E +S++L KR +AQ + CHV A
Sbjct: 452 VDYLVNSLDCKIIILDPIT-LALSRSDTD-EEEVLSELLRRCKRYQYAQVNVCHVRKSAG 509
Query: 630 PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR---DPEAGPIDRVQVCVRKVRNK 686
++ ++ G+ DI GS + N I++ RN+ DP + ++++ + K
Sbjct: 510 GQKANSEGGDISE-EDIKGSGAYFQISMNNILLMRNKVDPDPVKKNLTKIKLTKCRRHGK 568
Query: 687 VVGTIGEAFLSYNRVTG 703
G G + YN TG
Sbjct: 569 STGIAGHTW--YNPDTG 583
>gi|443726544|gb|ELU13663.1| hypothetical protein CAPTEDRAFT_220406 [Capitella teleta]
Length = 730
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 106/496 (21%), Positives = 199/496 (40%), Gaps = 76/496 (15%)
Query: 231 ISAETLR--RNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKV----- 283
+S ETL R RV+ G+ +++ R+ +V K K QE +V
Sbjct: 265 LSMETLNTFRIRVINSDQGYSLLVPLYDLRDA-IVGMKIHTVTKFTVQEMQRNRVVSKII 323
Query: 284 -------FYGLDDIEGE-SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSE 335
+G ++ + +++ E D +++ + + +++P G+ + +S+K +P+
Sbjct: 324 PKLEFGSLFGWHLMKPKHKSVVLTASEWDAMAIYQVTGVPALALPRGS-AFLSQKVLPA- 381
Query: 336 EQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVD 395
L+Q S I L D D A+ L++++ RC V+ P +N
Sbjct: 382 ---------------LEQFSSITLWLDSDVKSWEAAKILSKKLNESRCSLVK-PAENQ-- 423
Query: 396 HFKDANEVLMYLGPGA-LKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTG 454
L L G + +++ A + +FR E+ + S +
Sbjct: 424 -----PSPLTALKEGYNISSILKAARPIKHQSITSFRSLRQEV---FSTLSESDVVAGVK 475
Query: 455 WRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME-NKVR 509
W+ L +L G ELT+ TG SGK+ +I ++ G + S E N V+
Sbjct: 476 WKRYPHLNKLLKGHRRGELTVFTGPTGSGKTTFISDYSLDLAMQ-GVNTLWGSFEINNVK 534
Query: 510 EHARKLLEKHIKKPFFEANYGGSAERM--TVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 567
L K + F + N + + T + FE L F + D+ K
Sbjct: 535 ------LMKTMLTQFAQMNLVKNIDLFDETADAFES----LPLFFMTFHGQEDT----KK 580
Query: 568 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV---SQMLTMVKRFAQHHACHV 624
V++ AV H ++ +++D + ++ T+ ++++ +RFA H CHV
Sbjct: 581 VIETMSHAVYIHDIQHVIVDNLQFMMGSSSFHRSSTDRFLIQDEIISAFRRFATHMNCHV 640
Query: 625 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 684
V HPR+ + E ++ I GSA + DN +++ R +QV +
Sbjct: 641 TLVIHPRKEKD--SEDLSMSSIFGSAKATQEADNVLILQDKRLVSPRGKKYIQVA----K 694
Query: 685 NKVVGTIGEAFLSYNR 700
N+ G +G L Y++
Sbjct: 695 NRFDGELGVMLLKYDK 710
>gi|426365910|ref|XP_004050009.1| PREDICTED: twinkle protein, mitochondrial isoform 1 [Gorilla
gorilla gorilla]
Length = 684
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 123/575 (21%), Positives = 222/575 (38%), Gaps = 80/575 (13%)
Query: 156 SLSLFLDEDGFSAVWMCFRAKCGW---KGSTSALVDNNRSQSSLKK---FSKMKTIREIT 209
S SLF+D+ + M A+ W + S D R L K F + +R I
Sbjct: 99 SFSLFIDKTTGRFLCMTSLAEGSWEDFQASVEGRGDGAREGFLLSKAPEFEDSEEVRRIW 158
Query: 210 EDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGHEVVIAFPYWRNG---- 260
++ L L ++ A+ + ++ +TL+R V R +V FP++ G
Sbjct: 159 NRAIPLWELPDQEEIQLADTMFGLTKVTDDTLKRFSVRYLRPARSLV--FPWFSPGGSGL 216
Query: 261 ---KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG-ESDIIIVEGEMDKLSMEEAG 312
KL+ K + + + +GL I ++++++ E+D L++ ++
Sbjct: 217 RGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLISRRDAEVVLTSRELDSLALNQST 276
Query: 313 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 372
L +++P G + + +P YL+Q RI+ D A+
Sbjct: 277 GLPTLTLPRGT-TCLPPALLP----------------YLEQFRRIVFWLGDDLRSWEAAK 319
Query: 373 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRD 432
AR++ +RC+ VR P + N G L ++ A + +FR
Sbjct: 320 LFARKLNPKRCFLVR-PGDQQPRPLEALN------GGFNLSRILRTALPAWHKSIVSFRQ 372
Query: 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYNVL----PGELTIVTGVPNSGKSEWIDALI 488
+E+ S E W +L +L GELT+ TG SGK+ +I
Sbjct: 373 LREEV---LGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYA 429
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548
++ G + S E AR +L + AE ++ ++ W
Sbjct: 430 LDLCSQ-GVNTLWGSFEISNVRLARVMLTQF-------------AEGRLEDQLDKYDHWA 475
Query: 549 S--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 606
L SI+ V+D + AV + + ++ID + +S
Sbjct: 476 DRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQ 535
Query: 607 SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666
++ + ++FA + CHV V HPR+ + + I GSA + DN ++I ++R
Sbjct: 536 DYIIGVFRKFATDNNCHVTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDR 592
Query: 667 DPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
GP R +QV +N+ G +G L +N+
Sbjct: 593 KLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 623
>gi|348686575|gb|EGZ26390.1| hypothetical protein PHYSODRAFT_479432 [Phytophthora sojae]
Length = 673
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 28/203 (13%)
Query: 294 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ 353
+++++ EGE D +++ +A + VS+P+G S+ +P L++
Sbjct: 238 NELVLTEGEFDAMAVHQATGMPAVSLPNGC-QSLPPSVLP----------------LLER 280
Query: 354 ASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALK 413
RI L D D GQ+ E+ A ++G RC+ VR P KDAN+ L L
Sbjct: 281 FKRIYLWMDNDASGQSNVEKFASKLGMTRCYIVRLPANASSSPVKDANDALR--AGLDLT 338
Query: 414 EVVENAELYPIMGLFNF----RDYFDEIDAYYHRTSGDEFGISTGWRALNELYNV-LPGE 468
+V++AE P + F RD ++EI R G + S + +LN L GE
Sbjct: 339 AIVKSAERMPHSQITTFEELRRDVYEEI-VNPLRACGVQ---SRAFPSLNRLMKGHRMGE 394
Query: 469 LTIVTGVPNSGKSEWIDALICNI 491
+T++TG GK+ + L ++
Sbjct: 395 VTVLTGSTGCGKTTLLSQLSLDL 417
>gi|338826825|ref|YP_004678739.1| DNA primase/helicase [Enterobacteria phage K30]
gi|335335288|gb|AEH41032.1| DNA primase/helicase [Enterobacteria phage K30]
Length = 576
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 117/486 (24%), Positives = 183/486 (37%), Gaps = 97/486 (19%)
Query: 258 RNGKLVNCKYRDFNKKFWQEKDTE-KVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 316
+NG +V+ K RD K F + +G G I+I EGE+D L++ +
Sbjct: 122 QNGSIVSQKLRDKEKNFSTRGSHKGDALFGKHLWNGGKKIVITEGEIDMLTVMQLQDCKW 181
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
V G +S +KK + + Y +IIL D D PG+A EE A
Sbjct: 182 PVVSLGHGASAAKKTCSANYE------------YFDSFDQIILMFDMDEPGRAAVEEAA- 228
Query: 377 RVGRERCWRVRWPKKNDVDHF--KDANEVLMYLGPGALKEVVEN----AELYP--IMGLF 428
+V P K V KDANE L+ G KEV++ A P ++G
Sbjct: 229 --------QVLPPGKVHVAVLTEKDANECLL---KGKGKEVLDQIWNAAPWVPDGVIGAM 277
Query: 429 NFRDYFDEIDAYYHRTSGDEFG-ISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDA 486
+ +D E TS G + +G LN+ GE+ +VT GKS ++
Sbjct: 278 SMKDRVREA-----MTSEQSVGYLFSGCPGLNDRTLGARGGEVIMVTSGSGMGKSTFVRQ 332
Query: 487 LICNINEHAGWKFVLCSMENKV--------------------REHARKLLEKHIKKPFFE 526
G K + +E V RE +KL+E +F+
Sbjct: 333 QALGFARGQGLKVGMAMLEESVEETMEDVLGIANGIRLRQQPREFKQKLIEDGTYDKWFD 392
Query: 527 ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVI 586
YG ++F L ++F+ E D L LAK +R G+ VI
Sbjct: 393 ELYG-------TDQFH-----LYDSFA--EAEVDRL--------LAKLHYMRTGLNCDVI 430
Query: 587 DPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV---- 637
LDH V E + + +++T +K FA+ + + H +
Sbjct: 431 I----LDHISIVVSASEESDERKMIDRLMTKLKGFAKSTGVVLIVICHLKNPEKGKAHEE 486
Query: 638 GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 697
G ++ D+ GS D I + RN+ + + V + + K R +G ++
Sbjct: 487 GRAVSITDLRGSGSLRQLSDTIIALERNQQGDMPNL--VLLRILKCRFNGIGVGIAGYME 544
Query: 698 YNRVTG 703
YN TG
Sbjct: 545 YNEKTG 550
>gi|315518940|dbj|BAJ51817.1| DNA primase/helicase-like protein [Ralstonia phage RSB2]
Length = 562
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 112/497 (22%), Positives = 195/497 (39%), Gaps = 58/497 (11%)
Query: 229 RLISAETLRR-NRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYG 286
R +S ET R+ + K G V +A G L+ K R+ +K+F K + +G
Sbjct: 83 RGLSEETCRKFGYWVGKVKGELVQVADYRDTTGALLGQKLRNKDKEFSCLGKVSRDHLWG 142
Query: 287 LDDIEGESD-IIIVEGEMDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 343
+ G+ I+I EGE+D +S+ + VS+P GA ++ E
Sbjct: 143 SNLWSGKGKMIVITEGEIDAMSVSQLQGNKWPVVSLPTGAKAAAKTLAANYE-------- 194
Query: 344 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 403
YL +I+L D D PGQ +E + + + + P KDAN
Sbjct: 195 ------YLDGYDKIVLMFDNDEPGQQAVQESCEVLPAGKVFIAKLP-------LKDANAC 241
Query: 404 LMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-Y 462
L+ A+ + + NA Y G+ RD D I G +F + LN++
Sbjct: 242 LIDGQGAAVMDAIWNASPYRPDGVVAARDLIDRI-KQRAVVKGIDFPMGV---VLNQMTL 297
Query: 463 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 522
V GE+ ++T GKS + G++ + +E V E + H+ K
Sbjct: 298 GVREGEVVMLTSGSGMGKSSFARECAYGWGRSMGYRIGMAFIEESVEETCLDIAGLHLNK 357
Query: 523 PFFEANYGGSAERMTVEE------FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAV 576
+ A +TV + FE L + F DSL L+ + V
Sbjct: 358 RIRQYP---DAVSVTVRDEALHDLFENDSYHLYDHFG--SAGEDSL------LNKLRFMV 406
Query: 577 LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-----PR 631
G + +++D + + ++ E + + +++T +K A+ ++H +
Sbjct: 407 TVLGCQFIILDHLSIVVSGMDEAEDERKTIDRLMTKLKTLAKTTGGRFVVISHLKRKDSK 466
Query: 632 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI 691
+ G +L ++ GS D I R++ E D V +R ++ + G
Sbjct: 467 STSHEEGGQISLSELRGSGAIAQLSDTVIGFERDQQGE----DPNLVTIRILKCRFTGDT 522
Query: 692 GEA-FLSYNRVTGEYMD 707
G A FL +N+ TG +D
Sbjct: 523 GVAGFLRFNKETGRLVD 539
>gi|281416294|ref|YP_003347534.1| DNA primase/helicase [Klebsiella phage KP32]
gi|262410413|gb|ACY66678.1| DNA primase/helicase [Klebsiella phage KP32]
Length = 582
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 117/486 (24%), Positives = 183/486 (37%), Gaps = 97/486 (19%)
Query: 258 RNGKLVNCKYRDFNKKFWQEKDTE-KVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 316
+NG +V+ K RD K F + +G G I+I EGE+D L++ +
Sbjct: 129 QNGSIVSQKLRDKEKNFSTRGSHKGDALFGKHLWNGGKKIVITEGEIDMLTVMQLQDCKW 188
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
V G +S +KK + + Y +IIL D D PG+A EE A
Sbjct: 189 PVVSLGHGASAAKKTCSANYE------------YFDSFDQIILMFDMDDPGRAAVEEAA- 235
Query: 377 RVGRERCWRVRWPKKNDVDHF--KDANEVLMYLGPGALKEVVEN----AELYP--IMGLF 428
+V P K V KDANE L+ G KEV++ A P ++G
Sbjct: 236 --------QVLPPGKVHVAVLTEKDANECLL---KGKGKEVLDQIWNAAPWVPDGVIGAM 284
Query: 429 NFRDYFDEIDAYYHRTSGDEFG-ISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDA 486
+ +D E TS G + +G LN+ GE+ +VT GKS ++
Sbjct: 285 SMKDRVREA-----MTSEQSVGYLFSGCPGLNDRTLGARGGEVIMVTSGSGMGKSTFVRQ 339
Query: 487 LICNINEHAGWKFVLCSMENKV--------------------REHARKLLEKHIKKPFFE 526
G K + +E V RE +KL+E +F+
Sbjct: 340 QALGFARGQGLKVGMAMLEESVEETMEDVLGIANGIRLRQQPREFKQKLIEDGAYDKWFD 399
Query: 527 ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVI 586
YG ++F L ++F+ E D L LAK +R G+ VI
Sbjct: 400 ELYG-------TDQFH-----LYDSFA--EAEVDRL--------LAKLHYMRTGLNCDVI 437
Query: 587 DPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV---- 637
LDH V E + + +++T +K FA+ + + H +
Sbjct: 438 I----LDHISIVVSASEESDERKMIDRLMTKLKGFAKSTGVVLIVICHLKNPEKGKAHEE 493
Query: 638 GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 697
G ++ D+ GS D I + RN+ + + V + + K R +G ++
Sbjct: 494 GRAVSITDLRGSGSLRQLSDTIIALERNQQGDMPNL--VLLRILKCRFNGIGVGIAGYME 551
Query: 698 YNRVTG 703
YN TG
Sbjct: 552 YNERTG 557
>gi|145497867|ref|XP_001434922.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402050|emb|CAK67525.1| unnamed protein product [Paramecium tetraurelia]
Length = 990
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 94/449 (20%), Positives = 183/449 (40%), Gaps = 51/449 (11%)
Query: 261 KLVNCKYRDFNKKFWQEKDTE-----KVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFL 314
+LV+CK R K + E K +G+ ++ +S +I+ EGE D ++ + +
Sbjct: 272 ELVSCKIRAAGKDLKHIQKIEPMNAAKGIFGMHLLKQDSTQVILTEGEFDAMAAYQMTNI 331
Query: 315 NCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEEL 374
+S+P G ++P+ YL ++ + II+ D D PG+ ++++
Sbjct: 332 PAISLPYGI------NHIPA--------YLIEWLDQFEKLNDIIIWVDDDNPGRINSQKI 377
Query: 375 ARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF 434
AR++G R V+ + D+ KDAN+ L + P + ++ ++ + F D+
Sbjct: 378 ARKLGNARTRVVQPSLLDPHDYPKDANDCLRFY-PDKVMTYIDQSKCLLKKNITQFTDF- 435
Query: 435 DEIDAYYHRTSGDEFGISTGWRAL------NELYNVLPGELTIVTGVPNSGKSEWIDALI 488
+ F +S G ++ N + GE TI+TG SGK+ ++ L
Sbjct: 436 ----KQLTKNRILNFELSKGTQSQTFTTYNNTTKGLRTGEFTILTGPTGSGKTTFLSQLS 491
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548
+ + G + S E K A L + K + + V++FE
Sbjct: 492 LDFCKE-GITTLWGSFEIKTDRLAEHQLLQAYKTDLIKQK---DLIDVAVQKFE------ 541
Query: 549 SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 608
N + + ++D + A+ + V + +D + + + ++ +
Sbjct: 542 -NEMPIYYMNFYGSTDLDQIIDTIEYAIYEYNVTHVCLDNLQFMMGTQVGGNRKFDFQDE 600
Query: 609 MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP 668
++ +R ++ H+ V HPR++ E + I GSA + DN +I +NR
Sbjct: 601 IIEKFRRLTSNNDIHLTLVIHPRKVDE--NEDLTIASIFGSAKATQEADNVFII-QNR-- 655
Query: 669 EAGPIDRVQVCVRKVRNKVVGTIGEAFLS 697
P RV + + VG +G F S
Sbjct: 656 ---PRYRVFEIKKNRYDGEVGRVGLGFDS 681
>gi|317058121|ref|ZP_07922606.1| hypothetical protein FSBG_00129 [Fusobacterium sp. 3_1_5R]
gi|313683797|gb|EFS20632.1| hypothetical protein FSBG_00129 [Fusobacterium sp. 3_1_5R]
Length = 304
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 91/207 (43%), Gaps = 22/207 (10%)
Query: 216 EPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFW 275
+ E+ Y A R IS ETL +++ R+G G + KYR +KK
Sbjct: 88 QDFTQEMLDYMAGRGISKETLINSKIFN-RNGRFCFFYVGEDEAGTCIGVKYRTIDKKIS 146
Query: 276 QEKDTEKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPS 334
K + + +S ++ IVEGE+D LS+ E G N VSVP+GA S
Sbjct: 147 AAKGSVMNLLNWRLVPKDSKELYIVEGEVDLLSLLEIGIKNVVSVPNGAGS--------- 197
Query: 335 EEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV 394
Y Y W L++ +IIL D D G+ + + R+ KK ++
Sbjct: 198 -HDWIDYHYEW-----LEKFKKIILIMDNDEAGKKGIKAIYDRLKHSEI----EIKKINL 247
Query: 395 DHFKDANEVLM-YLGPGALKEVVENAE 420
+KD NE+LM G LK+++E E
Sbjct: 248 LFYKDPNEILMDESGRMKLKKILETGE 274
>gi|340507023|gb|EGR33048.1| hypothetical protein IMG5_063030 [Ichthyophthirius multifiliis]
Length = 422
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 89/412 (21%), Positives = 176/412 (42%), Gaps = 64/412 (15%)
Query: 263 VNCKYRDF---NKKFWQEKDTEKV--FYGLDDIE-GESDIIIVEGEMDKLSMEEAGFLNC 316
V CK R NK+F + K + + +GL+ + +I+I EGE D +++ + +
Sbjct: 15 VKCKIRGVGKENKQFMRMKPSGQSSGLFGLNTVPINAKEIVITEGEYDAMAVFQETGIPS 74
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
+S+P+GA N+P + + NC L+Q +I L D D GQ ++A
Sbjct: 75 ISLPNGAC------NLPCQ--------VINC---LEQFEKIYLWMDNDQAGQNNYPKIAE 117
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 436
++G R + V KDAN+VL P + + ++ A + F D ++
Sbjct: 118 KLGLNRSFIVLTKNGE-----KDANDVLRK-NPHKMIQYIKEARTIHDKNILKFEDIKEQ 171
Query: 437 IDAYYHRTSGDEFGISTGWRALN-ELYN-----VLPGELTIVTGVPNSGKSEWIDAL--- 487
+ Y+R +F ++ G + + + YN + GE+T++TG SGK+ ++ L
Sbjct: 172 V---YNRIF--KFDLNQGVKCSSFQFYNEKIKGLRKGEMTVLTGPTGSGKTTFLSQLSLD 226
Query: 488 ICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTV--EEFEQGK 545
C+ W S E K A ++ ++ + F+ S E+ E+F+
Sbjct: 227 FCSKQVPTLWG----SFEIKNEILATNMVLQYSNENLFK-----SPEKFIYWSEQFQNIP 277
Query: 546 AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 605
+ + F N +L+ + ++ + ++ ++ID L + + +
Sbjct: 278 MYFMSFFGSTNINN--------ILETIEYSIYAYNIQHVIIDNLQFLLGTQGKGFDKFDL 329
Query: 606 VSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657
+ + ++ A H+ V HP+++ + E N+ + GSA + D
Sbjct: 330 QDKAIENFRKLATEKNIHLTLVIHPKKVDDR--EDLNISSVFGSAKATQEAD 379
>gi|395828255|ref|XP_003787301.1| PREDICTED: twinkle protein, mitochondrial [Otolemur garnettii]
Length = 684
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 137/580 (23%), Positives = 225/580 (38%), Gaps = 90/580 (15%)
Query: 156 SLSLFLDEDGFSAVWMCFRAKCGW---KGSTSALVDNNRSQSSLKKFSKMKTIREITEDS 212
S SLF+D+ + M A+ W + S D NR L K + + I E+
Sbjct: 99 SFSLFIDKTTGRFLCMTSLAEGSWEDFQASVEGRGDGNREGVLLSKTLEAEDIEEVQRIW 158
Query: 213 LELEPL-----GNEL---RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG---- 260
PL E+ R F ++ +TLRR V R +V FP++ G
Sbjct: 159 DRAVPLWELPDPEEIQLARTMFGLNKVTDDTLRRFSVRYLRSARSLV--FPWFYPGSWGL 216
Query: 261 ---KLVNCKYRDFNKKFWQEKDTEKVFY----GLDDIEG-ESDIIIVEGEMDKLSMEEAG 312
KL+ + + + Q Y GL I + ++++ E+D L+++++
Sbjct: 217 RGLKLLGAEGQGDGVHYIQTTIPRPGAYHNLFGLPLISHRDVEVVLTSRELDSLALKQST 276
Query: 313 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 372
L +++P G S + +P YL+Q RI+ D A+
Sbjct: 277 GLPTLALPRGT-SCLPPALLP----------------YLEQFRRIVFWLGDDLRSWEAAK 319
Query: 373 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRD 432
AR++ +RC VR P + N L L ++ +A + +FR
Sbjct: 320 LFARKLNPKRCSLVR-PGDQQPCPLEALNRGL------NLSRILRSALPAWHKSIVSFRQ 372
Query: 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWID--A 486
+E+ S E W +L +L G ELT+ TG SGK+ +I A
Sbjct: 373 LREEV---LGELSNVEQVAGVRWSRFPDLSRLLKGHRKGELTVFTGPTGSGKTTFISEYA 429
Query: 487 L-ICNINEHAGWKFVLCSMENKVR----EHARKLLEKHIKKPFFEANYGGSAERMTVEEF 541
L +C+ + W S R + A LE+ + K Y A+R F
Sbjct: 430 LDLCSQGVNTLWGSFEISNVRLARVMLTQFAMGRLEEQLDK------YDEWADR-----F 478
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
E L F + SI+ V+D + AV + + +VID + +S
Sbjct: 479 ED----LPLYFMTFHGQQ----SIRTVIDTMQHAVYVYDICHVVIDNLQFMMGHEQLSTD 530
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 661
++ ++FA +CHV V HPR+ + + I GSA + DN I+
Sbjct: 531 RIAAQDYIVGAFRKFATDTSCHVTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-IL 587
Query: 662 IHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
I ++R GP R +QV +N+ G +G L +N+
Sbjct: 588 ILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 623
>gi|312965232|ref|ZP_07779468.1| gp61 [Escherichia coli 2362-75]
gi|419017225|ref|ZP_13564549.1| DNA replication protein [Escherichia coli DEC1E]
gi|312290116|gb|EFR18000.1| gp61 [Escherichia coli 2362-75]
gi|377866340|gb|EHU31113.1| DNA replication protein [Escherichia coli DEC1E]
Length = 409
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/332 (21%), Positives = 135/332 (40%), Gaps = 38/332 (11%)
Query: 351 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGP 409
L + I ++ D D G+ A E+A R+G RC V P +KD NE LM +
Sbjct: 33 LDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTE 85
Query: 410 GALKEVVENAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGE 468
+ + + A + L++ R+++ D I+A+Y + ++ + W +L + + E
Sbjct: 86 DEIWQYIGTASYFDPEELYSAREFYQDTINAFYGK---QQYLFNPPWESLADKFQFREAE 142
Query: 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFF 525
LT+V GV GK+E + + G K + S+E K ++L + P
Sbjct: 143 LTLVNGVNGHGKTEVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVL 201
Query: 526 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 585
E + + +F + W+ + + ++++ A R+G++ +
Sbjct: 202 EID--------SAFKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFI 245
Query: 586 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYD 645
ID + + +V + F HV V H R+ + +P D
Sbjct: 246 IDSLMKCGIGDDDYNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMD 300
Query: 646 ISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 677
+ GS + DN +I RN+ E + RVQ
Sbjct: 301 VKGSGAITDLTDNLFIIWRNKARERA-LQRVQ 331
>gi|345893813|ref|ZP_08844605.1| hypothetical protein HMPREF1022_03265 [Desulfovibrio sp.
6_1_46AFAA]
gi|345045849|gb|EGW49748.1| hypothetical protein HMPREF1022_03265 [Desulfovibrio sp.
6_1_46AFAA]
Length = 563
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 114/511 (22%), Positives = 203/511 (39%), Gaps = 65/511 (12%)
Query: 217 PLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQ 276
PL ++A L + + G +A Y + G+L R K F
Sbjct: 71 PLETSIKALKVRGLTAETCAHFGYGIGNHRGKPCHVAPLYDKEGRLCAQHLRLEGKDFKW 130
Query: 277 EKDTEKV-FYGLDDIEGESD-IIIVEGEMDKLSMEE--AGFLNCVSVPDGAPSSVSKKNV 332
DTE V +G + +++ EGE+D +S+ + VS+P+GA S+V
Sbjct: 131 LGDTEAVGLFGWNVWRNSGRRVVVTEGEIDCMSVSQLQGNKWPVVSLPNGAQSAV----- 185
Query: 333 PSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKN 392
+++ +L+ ++LA D D PGQA A E A +C R P
Sbjct: 186 ---------KFIRRALEWLEGFDEVVLAFDMDEPGQAAARECALLFSPGKCKIARLPD-- 234
Query: 393 DVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIS 452
KDAN L+ L + + A Y G+ + D +D++ + G
Sbjct: 235 -----KDANACLLAGKGKELLDSLWGAVPYRPDGIRSGADLWDDL------LKPPQPGYD 283
Query: 453 TGWRALN-ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511
+ LN +L + EL + T GKS ++ + ++ + ++E +
Sbjct: 284 IPYPGLNAKLRGLRLRELYLFTAGSGIGKSTLVNEIAYHLKMVHHLPLGVMALEESPARN 343
Query: 512 ARKLLEKHIKKPFF--EANYG-GSAERMTVEEFEQGKA-WLSNTFSLIRCENDSLPSIKW 567
AR+ L H+ KP EA+ A+ + E GK W+ + F I
Sbjct: 344 ARRYLGIHLNKPLHLPEAHAAVPEADLKSAFEAVMGKDWWIYDHF--------GSSDIDT 395
Query: 568 VLDLAKAAVLRHGVRGLVID----PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623
+L + + G + LV+D + LD ++E + + +++T +++ +
Sbjct: 396 LLAKIRYMAVGLGCKVLVLDHISIVVSGLDES--AGESERKVIDKLMTKLRQLVEETNVM 453
Query: 624 VWFVAH---PRQLHNW-VGEPPNLYDISGSAHFINKCDNGIVIHRNR---DPEAGPIDRV 676
+ V H P + ++ G +L D+ GS D I + R++ DP A
Sbjct: 454 LLAVVHLKRPDKGKSYNEGRQVSLTDMRGSGGLEQMSDAVISLERDQQGDDPNA------ 507
Query: 677 QVCVRKVRNKVVGTIGEA-FLSYNRVTGEYM 706
VR ++N+ +G GEA ++ Y TG +
Sbjct: 508 -ALVRVLKNRPIGDCGEAGYVRYVPETGRLL 537
>gi|194100433|ref|YP_002003806.1| gp4A [Klebsiella phage K11]
gi|193201372|gb|ACF15850.1| gp4A [Klebsiella phage K11]
Length = 576
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 115/486 (23%), Positives = 179/486 (36%), Gaps = 97/486 (19%)
Query: 258 RNGKLVNCKYRDFNKKFWQEKDTE-KVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 316
+NG +V+ K RD K F + +G G I+I EGE+D L++ +
Sbjct: 122 QNGSIVSQKLRDKEKNFSTRGSHKGDALFGKHLWNGGKKIVITEGEIDMLTVMQLQDCKW 181
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
V G +S +KK + + Y +IIL D D PG+A EE A
Sbjct: 182 PVVSLGHGASAAKKTCSANYE------------YFDSFDQIILMFDMDDPGRAAVEEAA- 228
Query: 377 RVGRERCWRVRWPKKNDVDHF--KDANEVLMYLGPGALKEVVEN----AELYP--IMGLF 428
+V P K V KDANE L+ G KEV++ A P ++G
Sbjct: 229 --------QVLPPGKVHVAVLTEKDANECLL---KGKGKEVLDQIWNAAPWVPDGVIGAM 277
Query: 429 NFRDYFDEIDAYYHRTSGDEFG-ISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDA 486
+ +D E TS G + +G LN+ GE+ +VT GKS ++
Sbjct: 278 SMKDRVREA-----MTSEQSVGYLFSGCPGLNDRTLGARGGEVIMVTSGSGMGKSTFVRQ 332
Query: 487 LICNINEHAGWKFVLCSMENKV--------------------REHARKLLEKHIKKPFFE 526
G + + +E V RE +KL+E +F+
Sbjct: 333 QALGFARGQGLRVGMAMLEESVEETMEDVLGIANGIRLRQQPREFKQKLIEDGTYDEWFD 392
Query: 527 ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVI 586
YG S+ F L DS + LAK +R G+ VI
Sbjct: 393 ELYG------------------SDQFHLY----DSFAEAEVDRLLAKLHYMRTGLNCDVI 430
Query: 587 DPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV---- 637
LDH V E + + +++T +K FA+ + + H +
Sbjct: 431 I----LDHISIVVSASEESDERKMIDRLMTKLKGFAKSTGVVLIVICHLKNPEKGKAHEE 486
Query: 638 GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 697
G ++ D+ GS D I + RN+ + + V + + K R +G ++
Sbjct: 487 GRAVSITDLRGSGSLRQLSDTIIALERNQQGDMPNL--VLLRILKCRFNGIGVGIAGYME 544
Query: 698 YNRVTG 703
YN TG
Sbjct: 545 YNEKTG 550
>gi|449019985|dbj|BAM83387.1| mitochondrial DNA helicase Twinkle [Cyanidioschyzon merolae strain
10D]
Length = 822
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/388 (23%), Positives = 152/388 (39%), Gaps = 44/388 (11%)
Query: 284 FYGLDDIEGESD-IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 342
+G+ + +++ +++ EGE D +++ ++ L+ VS+P+GA +++P
Sbjct: 425 LFGMHLVPADAECLVVTEGEFDAMAVHQSTGLSAVSLPNGA------RSLPPA------- 471
Query: 343 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 402
+L++ RI L D D PG A + A ++G +RC+ V + KDANE
Sbjct: 472 ----LLTWLERFKRIYLWLDDDIPGHDGARQFAHKLGLQRCFLV---GSGNGSGPKDANE 524
Query: 403 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY 462
L L L ++E A P + F D ++ S LN L
Sbjct: 525 AL--LQQRDLFAMIERARPVPHERIVTFADLRADVQRELANPVQVRGLQSQTLPGLNRLL 582
Query: 463 NV-LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME-NKVREHARKLLEKHI 520
GELTI +G GK+ + L + G + S E N VR + K +
Sbjct: 583 KGHRRGELTIFSGPTGVGKTTVLSQLSLDYCMQ-GANTLWGSFELNNVR------MAKVM 635
Query: 521 KKPFFEANYGGSAERM--TVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR 578
F ER ++FEQ + F +D + V+ + A
Sbjct: 636 LSQFAGIGLDAMGERFDQVADQFEQLPLYFLRFFG----SSD----VDQVIHAMEYAAYV 687
Query: 579 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG 638
+ V +V+D + + E + + + + FA H HV V HPR+
Sbjct: 688 YDVAHVVLDNLQFMTSGQGRGYERFEIMDRAIEKFRAFATEHNVHVSVVIHPRKEDE--D 745
Query: 639 EPPNLYDISGSAHFINKCDNGIVIHRNR 666
+ + GSA + DN I+I R
Sbjct: 746 QLLKTASVFGSAKATQEADNVIIIQNGR 773
>gi|24962647|ref|NP_722491.2| twinkle protein, mitochondrial [Mus musculus]
gi|78099072|sp|Q8CIW5.1|PEO1_MOUSE RecName: Full=Twinkle protein, mitochondrial; AltName:
Full=Progressive external ophthalmoplegia 1 protein
homolog; AltName: Full=T7 gp4-like protein with
intramitochondrial nucleoid localization; AltName:
Full=T7-like mitochondrial DNA helicase; Flags:
Precursor
gi|24473770|gb|AAL27647.1| Twinkle [Mus musculus]
gi|48734593|gb|AAH71195.1| Progressive external ophthalmoplegia 1 (human) [Mus musculus]
gi|74226718|dbj|BAE27008.1| unnamed protein product [Mus musculus]
gi|148709998|gb|EDL41944.1| progressive external ophthalmoplegia 1 (human) [Mus musculus]
Length = 685
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 110/497 (22%), Positives = 196/497 (39%), Gaps = 69/497 (13%)
Query: 223 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYRDFNKKFW 275
R F ++ +TLRR V R +V FP++ G KL+ + ++ ++
Sbjct: 178 RVMFGLTKVTDDTLRRFSVRYLRSARSLV--FPWFTPGSSGLRGLKLLGAEGQENGVQYV 235
Query: 276 QEKDTEKVFY----GLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 330
+ Y GL I ++++++ E+D L++ ++ L +S+P G +
Sbjct: 236 ETTIPRPGVYHNLFGLPLISRRDTEVVVTSRELDSLALSQSTGLPTLSLPRGT-VCLPPA 294
Query: 331 NVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK 390
+P YL+Q RI+ D A+ AR++ +RC VR P
Sbjct: 295 LLP----------------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVR-PG 337
Query: 391 KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 450
+ N+ L +L ++ A + +FR +E+ S E
Sbjct: 338 NQQPRPLEALNQGL------SLPRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQA 388
Query: 451 ISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 389 AGVRWSRFPDLNRLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEI 447
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS--NTFSLIRCENDSLPS 564
AR +L + + R+ E+ ++ + W L S
Sbjct: 448 SNVRLARVMLTQF------------AVTRLE-EQLDKYEEWADRFEDLPLYFMTFHGQQS 494
Query: 565 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624
I+ V+D + AV + V +VID + +S ++ ++FA ++CHV
Sbjct: 495 IRSVIDTMQHAVYVYDVCHVVIDNLQFMMGHEQLSSDRIAAQDYIVGAFRKFATDNSCHV 554
Query: 625 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKV 683
V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 555 TLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS---- 607
Query: 684 RNKVVGTIGEAFLSYNR 700
+N+ G +G L +N+
Sbjct: 608 KNRFDGDVGVFPLEFNK 624
>gi|320158401|ref|YP_004190779.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
gi|319933713|gb|ADV88576.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
Length = 552
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 104/436 (23%), Positives = 176/436 (40%), Gaps = 63/436 (14%)
Query: 214 ELEPLGNELRAYFAERLISAETLRR--NRVMQKRHGHEVVIAFPYW-----RNGKLVNCK 266
+ +PL E RA +R +S ET +R RV + H + + +GKLV K
Sbjct: 62 DFKPLRGEFRA-LPKRGLSEETAKRFSYRVGEAWHPENKRLEMAHICDVKTEDGKLVAQK 120
Query: 267 YRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEE--AGFLNCVSVPDGA 323
R +K F K G+ G +++ EGE+D LS+ + VS+P+G
Sbjct: 121 CRFADKAFSVNGKIPKGTLIGMHLFSGGRRLVVSEGEVDMLSVSQMQGNKYPVVSLPNGV 180
Query: 324 PSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERC 383
S+ S +L C YLK+ ++LA D D GQ A++ A +
Sbjct: 181 QSAKS--------------HLLACIDYLKKFDEVVLAFDMDDVGQDSAQKAAEALA--GV 224
Query: 384 WRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHR 443
V+ K KDAN++L + + + NAE+Y GL + D + +
Sbjct: 225 VNVKIAKYE----LKDANDMLRAGKTSEMVQALWNAEVYTPDGLLDVDDVLESL-----F 275
Query: 444 TSGDEFGISTGWRALNELYNV-LPGELTIVTGVPNSGKS----EWIDALICNINEHAGWK 498
DE G+ +N+ N GE+ + GK+ E D + + + G
Sbjct: 276 EGDDESGLPWKHEGMNKTSNGRFYGEVHTLGAGTGLGKTTLLLEQADYDVTVLKQKVG-- 333
Query: 499 FVLCSMENKVREHARKLLEKHIKKPFFEANYGG----SAERMTVEEFEQGKAWLSNTFSL 554
L +EN +E R + KH + + N A R T + + +G ++ + + L
Sbjct: 334 --LFMVENDPKEVLRSICGKHDGRLYHVRNTDDYMMQDAIRQTAQLY-RGNLYIYDNWGL 390
Query: 555 IRCENDSLPS-IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 613
CE DS+ + I +++ L G R +D L + E + +++ +
Sbjct: 391 --CEWDSIKAKIVYLVSL--------GFRVFYVDHLTAL--ATGSDKDEKAEIERIMADI 438
Query: 614 KRFAQHHACHVWFVAH 629
AQ H + V+H
Sbjct: 439 ASLAQRHQILIHLVSH 454
>gi|317419622|emb|CBN81659.1| Twinkle protein, mitochondrial [Dicentrarchus labrax]
Length = 721
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 101/475 (21%), Positives = 190/475 (40%), Gaps = 86/475 (18%)
Query: 222 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW-------RNGKLVNCKYRDFNKKF 274
++ F IS TL++ V + +V FP++ + K+++ + D K
Sbjct: 207 IKTMFQITKISDATLKKFGVRVFKPTKSLV--FPWFGGPDSTLKGMKILSAQSTDTEKVT 264
Query: 275 WQEKDTEKV-----FYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS 328
+ E K +GL + +S++++ E+D L++ +A L V++P G S +
Sbjct: 265 YNEATLPKYNSYYNLFGLPLVGSIDSEVVLTGHELDTLAVSQATGLPSVALPRGV-SCLP 323
Query: 329 KKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRW 388
+P YL+Q R+ L GD ++ +R++G RC VR
Sbjct: 324 PILLP----------------YLEQFKRVTLWLGGDIRSWEASKIFSRKLGLRRCSLVRP 367
Query: 389 PKKND-----VDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHR 443
+ + K+ ++ P A K +V +L D Y
Sbjct: 368 GEARPCPVEALAQGKNFVPIIKSSIPAAHKSIVSFKQLRE--------------DVYGEL 413
Query: 444 TSGDEFGISTGWRALNELYNVL----PGELTIVTGVPNSGKSEWIDALICNINEHAGWKF 499
+ D+ W+ EL +L GELT+ TG SGK+ I + ++ G
Sbjct: 414 VNTDQVA-GVKWKRFQELTRILKGHRKGELTVFTGPTGSGKTTLISEVALDLCMQ-GVNT 471
Query: 500 VLCSME-NKVR-------EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT 551
+ S E N VR + A + LE+++++ F A+ +FE+ L
Sbjct: 472 LWGSFEINNVRLAKIMLTQFAMQRLEENLEQYDFWAD-----------KFEE----LPLY 516
Query: 552 FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLT 611
F + + +K VLD + AV + + ++ID + Q ++ + ++
Sbjct: 517 FMTFHGQQN----LKTVLDTMQHAVYLYDINHVIIDNLQFMMGQEHLTVDKFAVQDHIIG 572
Query: 612 MVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666
++FA + +CHV + HPR+ + I GSA + DN +++ +
Sbjct: 573 AFRKFATNSSCHVTLIIHPRKEED--DRELQTASIFGSAKASQEADNVLILQEKK 625
>gi|451989254|gb|AGF91724.1| DNA primase/helicase [Synechococcus phage S-CBP4]
Length = 533
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 107/469 (22%), Positives = 187/469 (39%), Gaps = 56/469 (11%)
Query: 251 VIAFPYW-RNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESD-IIIVEGEMDKLSM 308
V+ F Y+ +G L+ CK + +K F E +G ++I EGE+D S
Sbjct: 91 VLRFHYYDESGILIGCKTKTKDKDFRYEGQPATCLFGQHLFPATGKRVVITEGELDAASC 150
Query: 309 EEA--GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 366
EA G+ VS+P G S+ +KK++ + W L+ I+L D D
Sbjct: 151 SEAMPGW-PMVSIPSG--SAAAKKSI-------QRAIPW-----LQGYEEIVLFFDNDEA 195
Query: 367 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMG 426
G+ EE A + +C +KDA++ L A++E + NA+ Y G
Sbjct: 196 GRKATEEAASVLPPGKCKIASLQGD-----YKDASDALSTNDSQAIREAIWNAKPYRPDG 250
Query: 427 LFNFRDYFDEIDAYYHRTSGD-EFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWID 485
+ + + + + ++ D F G +A +L+ + GEL +T GKS +
Sbjct: 251 IVDGKSLLELVTTPSPPSNHDYPF---QGLQA--KLHGIRYGELVTITAGSGIGKSSFCR 305
Query: 486 ALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK 545
L ++ G + ++E R A L+ + K + G +R ++ E Q
Sbjct: 306 ELATDLLRK-GERVGYLALEESNRRTALGLMSAAVGKSL----HIGEHDRSSLTEAYQAT 360
Query: 546 AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH----QRPVSQT 601
N F D S L + L G+ VI LDH +
Sbjct: 361 LANWNLFLF-----DGFGSFDPDLIYNRIEYLAAGLDTRVI----FLDHLSILLSGLDGD 411
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQL----HNWVGEPPNLYDISGSAHFINKCD 657
E + +T ++ + ++ V+H R+ ++ G L + GSA D
Sbjct: 412 ERRMIDTTMTRLRSLVERTGIAMFLVSHLRRTTQDKNHEEGARVTLGQLRGSAAIAQLSD 471
Query: 658 NGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF-LSYNRVTGEY 705
+ I + R++ + D VR ++N+ G +G A LSY+ T ++
Sbjct: 472 SVIALERDQQSASKQSD---TTVRVLKNRYSGEVGVACRLSYDLTTCKF 517
>gi|383397786|gb|AFH22563.1| hypothetical protein OSG_eHP30_00030 [Environmental Halophage
eHP-30]
Length = 616
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 15/187 (8%)
Query: 452 STGWRALNELYNVLPGELTIVTGVPNSGKS-EWIDALICNINEHAGWKFVLCSMENKVRE 510
STG+ ++++LY V PG T + G SGKS W+D + N++ G K + S E +
Sbjct: 318 STGYPSVDQLYKVFPGYFTTIYGSSFSGKSLLWLD-FLKNMSYRHGLKHCIFSPETGAYD 376
Query: 511 HAR-KLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVL 569
KL E +K F++ RM+ EE + K ++ F ++ SL ++ L
Sbjct: 377 DVFIKLCEMVAEKDFYDT----YNNRMSEEELRRAKEFVDKHFIVVDPGEHSL-DLETAL 431
Query: 570 DLAKAAVLRHGVR--GLVIDPYNELDHQRPVSQT---ETEYVSQMLTMVKRFAQHHACHV 624
+ + + V+ L +DP+N+LDH P+ + E +Y+ + + V+ A + H+
Sbjct: 432 EYLQIIERYYSVKVNTLTLDPWNDLDH--PIDEADGREDKYLEKAIKKVRLSAYLNDWHI 489
Query: 625 WFVAHPR 631
+ H R
Sbjct: 490 CIITHAR 496
>gi|194100434|ref|YP_002003807.1| gp4B [Klebsiella phage K11]
gi|193201373|gb|ACF15851.1| gp4B [Klebsiella phage K11]
Length = 508
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 117/487 (24%), Positives = 185/487 (37%), Gaps = 99/487 (20%)
Query: 258 RNGKLVNCKYRDFNKKFWQEKDTE-KVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 316
+NG +V+ K RD K F + +G G I+I EGE+D L++ +
Sbjct: 54 QNGSIVSQKLRDKEKNFSTRGSHKGDALFGKHLWNGGKKIVITEGEIDMLTVMQLQDCKW 113
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
V G +S +KK + + Y +IIL D D PG+A EE A
Sbjct: 114 PVVSLGHGASAAKKTCSANYE------------YFDSFDQIILMFDMDDPGRAAVEEAA- 160
Query: 377 RVGRERCWRVRWPKKNDVDHF--KDANEVLMYLGPGALKEVVEN----AELYP--IMGLF 428
+V P K V KDANE L+ G KEV++ A P ++G
Sbjct: 161 --------QVLPPGKVHVAVLTEKDANECLL---KGKGKEVLDQIWNAAPWVPDGVIGAM 209
Query: 429 NFRDYFDEIDAYYHRTSGDEFG-ISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDA 486
+ +D E TS G + +G LN+ GE+ +VT GKS ++
Sbjct: 210 SMKDRVREA-----MTSEQSVGYLFSGCPGLNDRTLGARGGEVIMVTSGSGMGKSTFVRQ 264
Query: 487 LICNINEHAGWKFVLCSMENKV--------------------REHARKLLEKHIKKPFFE 526
G + + +E V RE +KL+E +F+
Sbjct: 265 QALGFARGQGLRVGMAMLEESVEETMEDVLGIANGIRLRQQPREFKQKLIEDGTYDEWFD 324
Query: 527 ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVI 586
YG ++F L ++F+ E D L LAK +R G+ VI
Sbjct: 325 ELYGS-------DQFH-----LYDSFA--EAEVDRL--------LAKLHYMRTGLNCDVI 362
Query: 587 DPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNW 636
LDH V E + + +++T +K FA+ + + H + + H
Sbjct: 363 ----ILDHISIVVSASEESDERKMIDRLMTKLKGFAKSTGVVLIVICHLKNPEKGKAHEE 418
Query: 637 VGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
G ++ D+ GS D I + RN+ + + V + + K R +G ++
Sbjct: 419 -GRAVSITDLRGSGSLRQLSDTIIALERNQQGDMPNL--VLLRILKCRFNGIGVGIAGYM 475
Query: 697 SYNRVTG 703
YN TG
Sbjct: 476 EYNEKTG 482
>gi|147907413|ref|NP_001084540.1| uncharacterized protein LOC414487 [Xenopus laevis]
gi|46250208|gb|AAH68751.1| MGC81247 protein [Xenopus laevis]
Length = 679
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 100/425 (23%), Positives = 174/425 (40%), Gaps = 75/425 (17%)
Query: 293 ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLK 352
E++++I E+D L++ ++ + +++P GA S + +P YL+
Sbjct: 275 ETEVVITSREVDCLAIHQSTGVTTIALPRGA-SCLPPVLLP----------------YLE 317
Query: 353 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK--NDVDHFKDA---NEVLMYL 407
Q RI+L D ++ AR++ +RC +R K + + F D ++L
Sbjct: 318 QFKRIVLWLGDDLRSWEASKLFARKLNMKRCSLIRPGDKQPSPLHAFNDGLNIGKILKAS 377
Query: 408 GPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG 467
P + K ++ +FR +E+ + + D+ W EL +L G
Sbjct: 378 LPASHKSII------------SFRQLREEV--FGQLENADQVA-GVKWNRFPELNKLLKG 422
Query: 468 ----ELTIVTGVPNSGKSEWI-----DALICNINEHAGWKFVLCSMENKVREHARKLLEK 518
ELT+ TG SGK+ +I D I IN G F L N VR L K
Sbjct: 423 HRRGELTVFTGPTGSGKTTFISEYALDLCIQGINTLWG-SFEL----NNVR------LAK 471
Query: 519 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRC--ENDSLPSIKWVLDLAKAAV 576
+ F + +R+ E+ ++ W L C +IK V+D + AV
Sbjct: 472 IMLTQF-------ALQRLE-EQLDKYDEWADKFEDLPLCFMTFHGQQNIKAVMDTMQHAV 523
Query: 577 LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNW 636
+ + ++ID + Q + M+ ++FA + CHV V HPR+ +
Sbjct: 524 YMYDITHVIIDNLQFMMGQENIYSDRFAAQDYMVGAFRKFATVNNCHVTVVIHPRKEDD- 582
Query: 637 VGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAF 695
+ I GSA + DN ++I ++R G R +QV +N+ G +G
Sbjct: 583 -DKELQTSSIFGSAKASQEADN-VLILQDRKLVTGQGKRHLQV----AKNRFDGEVGVFS 636
Query: 696 LSYNR 700
L +N+
Sbjct: 637 LEFNK 641
>gi|414090100|ref|YP_006990218.1| primase/helicase protein [Stenotrophomonas phage IME15]
gi|409995522|gb|AFV51455.1| primase/helicase protein [Stenotrophomonas phage IME15]
Length = 503
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 116/477 (24%), Positives = 187/477 (39%), Gaps = 81/477 (16%)
Query: 258 RNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 316
+NG +++ K RD +K F + +G G I++ EGE+D L++ E +C
Sbjct: 50 QNGSIISQKVRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVME--LQDC 107
Query: 317 ----VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 372
VS+ GA ++ E Y Q +IIL D D G+ E
Sbjct: 108 KYPVVSLGHGAAAAKKTCAANYE--------------YFDQFEQIILMFDMDEAGRKAVE 153
Query: 373 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY---PIMGLFN 429
E A+ + + P KDANE + + E + NA + ++ +
Sbjct: 154 EAAQVLPAGKVRVAVLP-------CKDANECHLNGHDREIMEQIWNAGPWIPDGVVSALS 206
Query: 430 FRDYFDEIDAYYHRTSGDEFG-ISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDAL 487
R+ E H S D G + +G LN+ GE+ +VT GKS ++
Sbjct: 207 LRERIRE-----HLGSEDAVGMLFSGCSGLNDRTLGARGGEVIMVTSGSGMGKSTFVRQQ 261
Query: 488 ICNINEHAGWKFVLCSMENKVREHARKL--LEKHI--------KKPFFEANYGGSAERMT 537
+ G + L +E V E A L L H+ K E G ++
Sbjct: 262 ALMWGKAMGKRVGLAMLEESVEETAEDLIGLNNHVRLRQSDDLKNAIIED---GRFDKWF 318
Query: 538 VEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
E F L ++F+ E D L LAK A +R G+ VI LDH
Sbjct: 319 DELFGNDTFHLYDSFA--EAEADRL--------LAKLAYMRTGLACDVI----VLDHISI 364
Query: 598 VSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDIS 647
V E + + +++T +K FA+ + + H + + H G P ++ D+
Sbjct: 365 VVSASEESDERKMIDRLMTKLKGFAKSTGVVLVVICHLKNPEKGKAHE-EGRPVSITDLR 423
Query: 648 GSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 703
GS D I + RN+ +A + V VR ++ + G G A ++ YN+ TG
Sbjct: 424 GSGALRQLSDTIIALERNQQGDAPNL----VLVRVLKCRFTGDTGIAGYMEYNKKTG 476
>gi|296221032|ref|XP_002756579.1| PREDICTED: twinkle protein, mitochondrial [Callithrix jacchus]
Length = 684
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 122/575 (21%), Positives = 220/575 (38%), Gaps = 80/575 (13%)
Query: 156 SLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKM------KTIREIT 209
S SL++D+ + M A+ W+ +++ S SK + +R I
Sbjct: 99 SFSLYIDKTTGRFLCMTSLAEGSWEDFQASVEGGGDGASEGLLLSKAPEVEDSEEVRRIW 158
Query: 210 EDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGHEVVIAFPYWRNG---- 260
++ L L + A + I+ +TL+R V R +V FP++ G
Sbjct: 159 NRAVPLSELPDPEEVQLAYTMFGLTNITDDTLKRFSVRYLRPARSLV--FPWFSPGGSGL 216
Query: 261 ---KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG-ESDIIIVEGEMDKLSMEEAG 312
KL+ K + + + + +GL I ++++++ E+D L++ ++
Sbjct: 217 RGLKLLQAKCQGDGVSYEETTIPQPSAYHNLFGLPLISRRDAEVVLTSRELDSLALNQST 276
Query: 313 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 372
L +++P G S + +P YL+Q RI+ D A+
Sbjct: 277 GLPTLTLPQGT-SCLPPALLP----------------YLEQFRRIVFWLGDDLRSWEAAK 319
Query: 373 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRD 432
AR++ +RC VR P + N L L ++ A + +FR
Sbjct: 320 LFARKLNPKRCSLVR-PGDQQPRPLEALNRGL------NLSRILRTALPAWHKSIVSFRQ 372
Query: 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALI 488
+E+ S E W +L +L G ELT+ TG SGK+ +I
Sbjct: 373 LREEV---LGELSNVEQAAGLPWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYA 429
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548
++ G + S E AR +L + AER ++ ++ W
Sbjct: 430 LDLCSQ-GVNTLWGSFEISNVRLARVMLTQF-------------AERRLEDQLDKYDHWA 475
Query: 549 S--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 606
L I+ V+D + AV + + +VID + +S
Sbjct: 476 DRFEDLPLYFMTFHGQQGIRTVVDTMQHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAAQ 535
Query: 607 SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666
++ + ++FA + CHV V HPR+ + + I GSA + DN ++I ++R
Sbjct: 536 DYIVGVFRKFATDNNCHVTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDR 592
Query: 667 DPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
GP R +QV +N+ G +G L +N+
Sbjct: 593 KLVTGPGKRYLQVS----KNRFDGDVGIFPLEFNK 623
>gi|355783033|gb|EHH64954.1| hypothetical protein EGM_18288 [Macaca fascicularis]
Length = 684
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 122/575 (21%), Positives = 221/575 (38%), Gaps = 80/575 (13%)
Query: 156 SLSLFLDEDGFSAVWMCFRAKCGW---KGSTSALVDNNRSQSSLKK---FSKMKTIREIT 209
S SLF+D+ + M A+ W + S D + L K F + +R I
Sbjct: 99 SFSLFIDKTTGRFLCMTSLAEGSWEDFQASVEGRRDGAKEGLLLSKAPEFEDSEEVRRIW 158
Query: 210 EDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGHEVVIAFPYWRNG---- 260
++ L L ++ A+ + ++ +TL+R V R +V FP++ G
Sbjct: 159 NRAVPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPARSLV--FPWFSPGGSGL 216
Query: 261 ---KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAG 312
KL+ K + + + +GL I ++++++ E+D L++ ++
Sbjct: 217 RGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLITRRDAEVVLTSRELDSLALNQST 276
Query: 313 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 372
L +++P G + + +P YL+Q RI+ D A+
Sbjct: 277 GLPTLTLPRGT-TCLPPSLLP----------------YLEQFRRIVFWLGDDLRSWEAAK 319
Query: 373 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRD 432
AR++ +RC+ VR P + N L ++ A + +FR
Sbjct: 320 LFARKLNPKRCFLVR-PGDQQPHPLEALNRGF------NLSRILRTALPAWHKSIVSFRQ 372
Query: 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALI 488
+E+ S E W +L +L G ELT+ TG SGK+ +I
Sbjct: 373 LREEV---LGELSNVEQVAGLRWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYA 429
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548
++ G + S E AR +L + AE ++ ++ W
Sbjct: 430 LDLCSQ-GVNTLWGSFEISNVRLARVMLTQF-------------AEGRLEDQLDKYDHWA 475
Query: 549 S--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 606
L SI+ V+D + AV + + +VID + +S
Sbjct: 476 DRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAAQ 535
Query: 607 SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666
++ + ++FA + CHV V HPR+ + + I GSA + DN ++I ++R
Sbjct: 536 DYIVGVFRKFATDNNCHVTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDR 592
Query: 667 DPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
GP R +QV +N+ G +G L +N+
Sbjct: 593 KLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 623
>gi|302565066|ref|NP_001181370.1| twinkle protein, mitochondrial [Macaca mulatta]
gi|383412383|gb|AFH29405.1| twinkle protein, mitochondrial isoform A [Macaca mulatta]
gi|387540958|gb|AFJ71106.1| twinkle protein, mitochondrial isoform A [Macaca mulatta]
Length = 684
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 122/575 (21%), Positives = 221/575 (38%), Gaps = 80/575 (13%)
Query: 156 SLSLFLDEDGFSAVWMCFRAKCGW---KGSTSALVDNNRSQSSLKK---FSKMKTIREIT 209
S SLF+D+ + M A+ W + S D + L K F + +R I
Sbjct: 99 SFSLFIDKTTGRFLCMTSLAEGSWEDFQASVEGRGDGAKEGLLLSKAPEFEDSEEVRRIW 158
Query: 210 EDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGHEVVIAFPYWRNG---- 260
++ L L ++ A+ + ++ +TL+R V R +V FP++ G
Sbjct: 159 NRAVPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPARSLV--FPWFSPGGSGL 216
Query: 261 ---KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAG 312
KL+ K + + + +GL I ++++++ E+D L++ ++
Sbjct: 217 RGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLITRRDAEVVLTSRELDSLALNQST 276
Query: 313 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 372
L +++P G + + +P YL+Q RI+ D A+
Sbjct: 277 GLPTLTLPRGT-TCLPPSLLP----------------YLEQFRRIVFWLGDDLRSWEAAK 319
Query: 373 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRD 432
AR++ +RC+ VR P + N L ++ A + +FR
Sbjct: 320 LFARKLNPKRCFLVR-PGDQQPRPLEALNRGF------NLSRILRTALPAWHKSIVSFRQ 372
Query: 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALI 488
+E+ S E W +L +L G ELT+ TG SGK+ +I
Sbjct: 373 LREEV---LGELSNVEQVAGLRWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYA 429
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548
++ G + S E AR +L + AE ++ ++ W
Sbjct: 430 LDLCSQ-GVNTLWGSFEISNVRLARVMLTQF-------------AEGRLEDQLDKYDHWA 475
Query: 549 S--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 606
L SI+ V+D + AV + + +VID + +S
Sbjct: 476 DRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYIYDICHVVIDNLQFMMGHEQLSTDRIAAQ 535
Query: 607 SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666
++ + ++FA + CHV V HPR+ + + I GSA + DN ++I ++R
Sbjct: 536 DYIVGVFRKFATDNNCHVTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDR 592
Query: 667 DPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
GP R +QV +N+ G +G L +N+
Sbjct: 593 KLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 623
>gi|313227700|emb|CBY22848.1| unnamed protein product [Oikopleura dioica]
Length = 582
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 120/276 (43%), Gaps = 36/276 (13%)
Query: 443 RTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+T+ D S + LNE L GELT+ +G GK+ ++ ++ + G K +
Sbjct: 269 QTAADSIKFSR-FSMLNECMGGLRKGELTLFSGHTGKGKTTFLSEYSIDLALN-GAKTLW 326
Query: 502 CSMENKVRE----HARKLLEKHIKKPFFEANYGGSAERMTVE-EFEQGKAWLSNTFSLIR 556
CS E K+ A +L +K S+E +E EF Q K L N L
Sbjct: 327 CSFEMKLEALQNMQAMQLCQK-------------SSEDCQMEYEFVQEK--LGNLGILAL 371
Query: 557 CENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVK 614
++D K + HG+ ++ID L S + Y+SQ + M++
Sbjct: 372 NSEPGSMDPNELIDKLKELIENHGIDHIIIDNMQFLIFG---SSADDAYMSQDNTIRMLR 428
Query: 615 RFAQHHACHVWFVAHPRQLHNWVGEPP----NLYDISGSAHFINKCDNGIVIHRNRDPEA 670
A H+ + HPR+ N + YD+SG A + + DN I++ ++D E+
Sbjct: 429 ELATFTDVHITVICHPRKTSNVSKKDGYAFLTEYDLSGRARSVQESDNVIILQTSQDIES 488
Query: 671 GPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
G + + + + K R+ +G IG + YNR T Y+
Sbjct: 489 G-VRKDWIQIHKCRHGELGKIG---VKYNRDTKTYL 520
>gi|417706326|ref|ZP_12355385.1| gp61 domain protein [Shigella flexneri VA-6]
gi|333007159|gb|EGK26650.1| gp61 domain protein [Shigella flexneri VA-6]
Length = 760
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 32/199 (16%)
Query: 297 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 356
++ EGE+D +S + G ++ +SVP G ++ + E + L +
Sbjct: 1 MLCEGEIDCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEE 47
Query: 357 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEV 415
I ++ D D G+ A E+A R+G RC V P +KD NE LM + + +
Sbjct: 48 IFISMDVDDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQY 100
Query: 416 VENAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 474
+ A + L++ R+++ D I+A+Y + ++ + W +L + + ELT+V G
Sbjct: 101 IGTASYFDPEELYSAREFYQDTINAFYGK---QQYLFNPPWESLADKFQFREAELTLVNG 157
Query: 475 VPNSGKSEWIDALICNINE 493
V GK+ C +NE
Sbjct: 158 VNGHGKA-------CPLNE 169
>gi|270003724|gb|EFA00172.1| hypothetical protein TcasGA2_TC002994 [Tribolium castaneum]
Length = 403
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 85/401 (21%), Positives = 157/401 (39%), Gaps = 59/401 (14%)
Query: 314 LNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEE 373
LN V +P+G +S+S+ +P+ L++ ++IL D A
Sbjct: 36 LNVVCLPNGV-NSLSQYVLPT----------------LERFQKLILWFGNDLKSWDSARH 78
Query: 374 LARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDY 433
A+++G RC+ VR +K + H + + K +V +A+ + NF +
Sbjct: 79 FAKKLGERRCFFVRPNEKQLLPHLVEGQD---------FKSIVNSAQPIWHKSITNFANL 129
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALIC 489
++ + E W+ L +L G ELT++TG GK+ +I
Sbjct: 130 RKDVFSDLQNIDKIE---GVKWKRFPALNKILRGHRRGELTVITGPTGCGKTTFISEYSL 186
Query: 490 NINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS 549
++ G + S E + AR +L++ P E + +F+ L+
Sbjct: 187 DL-AMQGVNTLWGSFEIRNVRLARTMLQQFAGFPLDE----------NLSQFDS----LA 231
Query: 550 NTFSLIRCENDSL---PSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 606
+ F L+ + +IK V+D + A H + ++ID + S+ +
Sbjct: 232 DKFELLPIYFMTFHGQQTIKVVMDAVEHATYVHDIAHVIIDNVQFMMGITEDSRHMDRFW 291
Query: 607 SQ--MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664
+Q ++ + FA CHV V HPR+ + N I G A + DN +I
Sbjct: 292 TQDVIIAAFRSFATRKNCHVTLVIHPRKERDEENLTTN--SIFGGAKASQEADNVFIIQD 349
Query: 665 NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
R +Q+C +N+ G +G L +++ Y
Sbjct: 350 KRLTSTRGKKYLQIC----KNRYSGDLGVMPLDFDKAGLSY 386
>gi|157821325|ref|NP_001101069.1| twinkle protein, mitochondrial [Rattus norvegicus]
gi|149040260|gb|EDL94298.1| progressive external ophthalmoplegia 1 homolog (human) (predicted)
[Rattus norvegicus]
Length = 683
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 109/497 (21%), Positives = 196/497 (39%), Gaps = 69/497 (13%)
Query: 223 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYRDFNKKFW 275
R F ++ +TLRR V R +V FP++ G KL+ + ++ ++
Sbjct: 178 RVMFGLTKVTDDTLRRFNVRYLRSTRSLV--FPWFTPGSSGLRGLKLLGVEGQENGVQYV 235
Query: 276 QEKDTEKVFY----GLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 330
+ Y GL I ++++++ E+D L++ ++ L +S+P G +
Sbjct: 236 ETTIPRPGVYHNLFGLPLIGRRDTEVVLTSRELDSLALSQSTGLPTLSLPRGT-VCLPPA 294
Query: 331 NVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK 390
+P YL+Q RI+ D A+ AR++ +RC VR P
Sbjct: 295 LLP----------------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVR-PG 337
Query: 391 KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 450
+ N+ L +L ++ A + +FR +E+ S +
Sbjct: 338 NQQPRPLEALNQGL------SLPRILRTALPAWHKSIVSFRQLREEV---LGELSNVDQA 388
Query: 451 ISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 389 AGVRWSRFPDLNRLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEI 447
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS--NTFSLIRCENDSLPS 564
AR +L + + R+ E+ ++ + W L S
Sbjct: 448 SNVRLARVMLTQF------------AVTRLE-EQLDKYEEWADRFEDLPLYFMTFHGQQS 494
Query: 565 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624
I+ V+D + AV + V +VID + +S ++ ++FA ++CHV
Sbjct: 495 IRSVIDTMQHAVYVYDVCHVVIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATDNSCHV 554
Query: 625 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKV 683
V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 555 TLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS---- 607
Query: 684 RNKVVGTIGEAFLSYNR 700
+N+ G +G L +N+
Sbjct: 608 KNRFDGDVGVFPLEFNK 624
>gi|189235245|ref|XP_970366.2| PREDICTED: similar to pom1 [Tribolium castaneum]
Length = 491
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 85/401 (21%), Positives = 157/401 (39%), Gaps = 59/401 (14%)
Query: 314 LNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEE 373
LN V +P+G +S+S+ +P+ L++ ++IL D A
Sbjct: 124 LNVVCLPNGV-NSLSQYVLPT----------------LERFQKLILWFGNDLKSWDSARH 166
Query: 374 LARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDY 433
A+++G RC+ VR +K + H + + K +V +A+ + NF +
Sbjct: 167 FAKKLGERRCFFVRPNEKQLLPHLVEGQD---------FKSIVNSAQPIWHKSITNFANL 217
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALIC 489
++ + E W+ L +L G ELT++TG GK+ +I
Sbjct: 218 RKDVFSDLQNIDKIE---GVKWKRFPALNKILRGHRRGELTVITGPTGCGKTTFISEYSL 274
Query: 490 NINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS 549
++ G + S E + AR +L++ P E + +F+ L+
Sbjct: 275 DL-AMQGVNTLWGSFEIRNVRLARTMLQQFAGFPLDE----------NLSQFDS----LA 319
Query: 550 NTFSLIRCENDSL---PSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 606
+ F L+ + +IK V+D + A H + ++ID + S+ +
Sbjct: 320 DKFELLPIYFMTFHGQQTIKVVMDAVEHATYVHDIAHVIIDNVQFMMGITEDSRHMDRFW 379
Query: 607 SQ--MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664
+Q ++ + FA CHV V HPR+ + N I G A + DN +I
Sbjct: 380 TQDVIIAAFRSFATRKNCHVTLVIHPRKERDEENLTTN--SIFGGAKASQEADNVFIIQD 437
Query: 665 NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
R +Q+C +N+ G +G L +++ Y
Sbjct: 438 KRLTSTRGKKYLQIC----KNRYSGDLGVMPLDFDKAGLSY 474
>gi|355562713|gb|EHH19307.1| hypothetical protein EGK_19987 [Macaca mulatta]
Length = 684
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 122/575 (21%), Positives = 220/575 (38%), Gaps = 80/575 (13%)
Query: 156 SLSLFLDEDGFSAVWMCFRAKCGW---KGSTSALVDNNRSQSSLKK---FSKMKTIREIT 209
S SLF+D+ + M A+ W + S D + L K F + +R I
Sbjct: 99 SFSLFIDKTTGRFLCMTSLAEGSWEDFQASVEGRGDGAKEGLLLSKAPEFEDSEEVRRIW 158
Query: 210 EDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGHEVVIAFPYWRNG---- 260
++ L L ++ A+ + ++ +TL+R V R +V FP++ G
Sbjct: 159 NRAVPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPARSLV--FPWFSPGGSGL 216
Query: 261 ---KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAG 312
KL+ K + + + +GL I ++++++ E+D L++ ++
Sbjct: 217 RGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLITRRDAEVVLTSRELDSLALNQST 276
Query: 313 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 372
L +++P G + + +P YL+Q RI+ D A+
Sbjct: 277 GLPTLTLPRGT-TCLPPSLLP----------------YLEQFRRIVFWLGDDLRSWEAAK 319
Query: 373 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRD 432
AR++ +RC VR P + N L ++ A + +FR
Sbjct: 320 LFARKLNPKRCCLVR-PGDQQPRPLEALNRGF------NLSRILRTALPAWHKSIVSFRQ 372
Query: 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALI 488
+E+ S E W +L +L G ELT+ TG SGK+ +I
Sbjct: 373 LREEV---LGELSNVEQVAGLRWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYA 429
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548
++ G + S E AR +L + AE ++ ++ W
Sbjct: 430 LDLCSQ-GVNTLWGSFEISNVRLARVMLTQF-------------AEGRLEDQLDKYDHWA 475
Query: 549 S--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 606
L SI+ V+D + AV + + +VID + +S
Sbjct: 476 DRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYIYDICHVVIDNLQFMMGHEQLSTDRIAAQ 535
Query: 607 SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666
++ + ++FA + CHV V HPR+ + + I GSA + DN ++I ++R
Sbjct: 536 DYIVGVFRKFATDNNCHVTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDR 592
Query: 667 DPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
GP R +QV +N+ G +G L +N+
Sbjct: 593 KLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 623
>gi|354505234|ref|XP_003514676.1| PREDICTED: LOW QUALITY PROTEIN: twinkle protein, mitochondrial-like
[Cricetulus griseus]
Length = 686
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 111/498 (22%), Positives = 196/498 (39%), Gaps = 71/498 (14%)
Query: 223 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYRDFNKKFW 275
R F ++ +TLRR V R +V FP++ G KL+ + + N+ +
Sbjct: 178 RVMFGLSKVTDDTLRRFSVRYLRSTRSLV--FPWFTPGGSGLRGLKLLGAEGQG-NEVQY 234
Query: 276 QEKDTEKV-----FYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSK 329
E + +GL I ++++++ E+D L++ ++ L +S+P G +
Sbjct: 235 VETTIPRPGAYHNLFGLPLISRRDAEVVLTSRELDSLALSQSTGLPTLSLPRGT-VCLPP 293
Query: 330 KNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWP 389
+P YL+Q RI+ D A+ AR++ +RC VR P
Sbjct: 294 ALLP----------------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVR-P 336
Query: 390 KKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF 449
+ N+ L +L ++ A + +FR +E+ S E
Sbjct: 337 GNQQPRPLEALNQGL------SLPRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQ 387
Query: 450 GISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 388 AAGVRWSRFPDLNRLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFE 446
Query: 506 NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS--NTFSLIRCENDSLP 563
AR +L + + R+ E+ ++ + W L
Sbjct: 447 ISNVRLARVMLTQF------------AVTRLE-EQLDKYEEWADRFEDLPLYFMTFHGQQ 493
Query: 564 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623
SI+ V+D + AV + V +VID + S ++ ++FA ++CH
Sbjct: 494 SIRSVVDTMQHAVYVYDVCHVVIDNLQFMMGHEQFSTDRIAAQDYIVGAFRKFATDNSCH 553
Query: 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRK 682
V V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 554 VTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS--- 607
Query: 683 VRNKVVGTIGEAFLSYNR 700
+N+ G +G L +N+
Sbjct: 608 -KNRFDGDVGVFPLEFNK 624
>gi|71897049|ref|NP_001026515.1| twinkle protein, mitochondrial precursor [Gallus gallus]
gi|78099071|sp|Q5ZIW1.1|PEO1_CHICK RecName: Full=Twinkle protein, mitochondrial; AltName:
Full=Progressive external ophthalmoplegia 1 protein
homolog; Flags: Precursor
gi|53134446|emb|CAG32332.1| hypothetical protein RCJMB04_23c24 [Gallus gallus]
Length = 669
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 104/499 (20%), Positives = 198/499 (39%), Gaps = 69/499 (13%)
Query: 223 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW-------RNGKLVNCKYRDFNKKFW 275
+A F ++ TL+R V R +V FP++ R KL+ + R +
Sbjct: 183 KAAFGIAPLADGTLKRFGVRYLRAAKALV--FPWFAPRDAALRGLKLLVAEQRGDAVSYT 240
Query: 276 QEK----DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 330
+E D + +GL I ++++++ E+D L++ +A + C+++P GA + +
Sbjct: 241 EETLPRFDAYRNLFGLPLIGRRDAEVVLTGSELDALALHQATGVPCLALPRGA-TILPPA 299
Query: 331 NVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK 390
+P YL+Q R+ L D ++ AR++ +RC V+ P
Sbjct: 300 LLP----------------YLEQFRRVTLWLGDDLRSWEASKLFARKLNPKRCSLVQ-PG 342
Query: 391 KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 450
+ N L L +++ A + +FR +E+ + + E
Sbjct: 343 DLQPRPLEALNRGL------NLTKILRAALPAGHKAIVSFRQLREEV---FGELANSEQV 393
Query: 451 ISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
W EL +L G ELT+ TG SGK+ +I ++ +C++
Sbjct: 394 AGVKWARFPELNKLLKGHRRGELTVFTGPTGSGKTTFISEYALDLCTQG-----VCTLWG 448
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS--NTFSLIRCENDSLPS 564
+ +L + + + A R ++ E W L +
Sbjct: 449 SFEINNIRLAKIMLTQ---------FATRRLEDQLELYDEWADRFEDLPLYFMTFHGQQN 499
Query: 565 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624
IK VLD + AV + + +V+D + +S ++ ++FA + CH+
Sbjct: 500 IKTVLDTMQHAVYMYDITHVVVDNLQFMMGHEQLSADRLAAQDFIVGAFRKFATDNTCHI 559
Query: 625 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKV 683
V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 560 TLVIHPRKEDD--EKELQTASIFGSAKASQEADN-VLILQDRKLTTGPGKRYLQVS---- 612
Query: 684 RNKVVGTIGEAFLSYNRVT 702
+N+ G +G L +++ +
Sbjct: 613 KNRFDGDVGVFPLEFSKAS 631
>gi|402881238|ref|XP_003904182.1| PREDICTED: twinkle protein, mitochondrial [Papio anubis]
Length = 684
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 128/596 (21%), Positives = 229/596 (38%), Gaps = 84/596 (14%)
Query: 135 APGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGW---KGSTSALVDNNR 191
+P E+ L K GD+ S SLF+D+ + M A+ W + S D +
Sbjct: 82 SPFAESSQL--KDQTGDTT--SFSLFIDKTTGRFLCMTSLAEGSWEDFQASVEGQGDGAK 137
Query: 192 SQSSLKK---FSKMKTIREITEDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQ 243
L K F K + I ++ L L ++ A+ + ++ +TL+R V
Sbjct: 138 EGLLLSKAPEFEDSKEVWRIWNRAVPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRY 197
Query: 244 KRHGHEVVIAFPYWRNG-------KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG 292
R +V FP++ G KL+ K + + + +GL I
Sbjct: 198 LRPARSLV--FPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLISR 255
Query: 293 -ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 351
++++++ E+D L++ ++ L +++P G + + +P YL
Sbjct: 256 RDAEVVLTSRELDSLALNQSTGLPTLTLPRGT-TCLPPSLLP----------------YL 298
Query: 352 KQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGA 411
+Q RI+ D A+ AR++ +RC+ VR P + N
Sbjct: 299 EQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCFLVR-PGDQQPRPLEALNRGF------N 351
Query: 412 LKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG---- 467
L ++ A + +FR +E+ S E W +L +L G
Sbjct: 352 LSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQVAGLRWSRFPDLNRILKGHRKG 408
Query: 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 527
ELT+ TG SGK+ +I ++ G + S E AR +L +
Sbjct: 409 ELTVFTGPTGSGKTTFISEYALDLCSQ-GVNTLWGSFEISNVRLARVMLTQF-------- 459
Query: 528 NYGGSAERMTVEEFEQGKAWLS--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 585
AE ++ ++ W L SI+ V+D + AV + + +V
Sbjct: 460 -----AEGRLEDQLDKYDHWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVV 514
Query: 586 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYD 645
ID + +S ++ + ++FA + CHV V HPR+ + +
Sbjct: 515 IDNLQFMMGHEQLSTDRIAAQDYIVGVFRKFATDNNCHVTLVIHPRKEDD--DKELQTAS 572
Query: 646 ISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
I GSA + DN ++I ++R GP R +QV +N+ G +G L +N+
Sbjct: 573 IFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 623
>gi|242007891|ref|XP_002424751.1| twinkle protein, putative [Pediculus humanus corporis]
gi|212508254|gb|EEB12013.1| twinkle protein, putative [Pediculus humanus corporis]
Length = 691
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 103/452 (22%), Positives = 180/452 (39%), Gaps = 71/452 (15%)
Query: 284 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQD----- 338
F+ D+ II ++G KLSM + NC V S S V +EE+D
Sbjct: 194 FFTFDNTIAGYKIIGIDG---KLSMYPS--TNCPGVLKSHNSEKSAI-VVAEEKDFFALL 247
Query: 339 ------------TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRV 386
Y YL + + + I+ GD + A+++G +RC+ V
Sbjct: 248 PLNLKSEIICLPYGYSYLPQSSLPVFEKYENIILWLGDAKAIDASSSFAKKLGEKRCFIV 307
Query: 387 RWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSG 446
+ +D A+ V+ G + +++NA+ + +F D +EI +
Sbjct: 308 K-----PIDKQISASSVVS--KGGQILPILKNAKSAWHESIISFCDLREEILSEIQNV-- 358
Query: 447 DEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWI-----DALICNINEHAGW 497
D+F W L +L G ELT++TG SGK+ +I D I +N G
Sbjct: 359 DQFS-GIKWNRFPTLNKILKGHRRGELTVLTGPTGSGKTTFISEYSLDLAIQGVNTLWG- 416
Query: 498 KFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLI 555
S E K A+K+L+++ + P E V++F W T +
Sbjct: 417 -----SFEIKNVRLAKKMLQQYSRIPLEE----------NVDKFNY---WADKFETLPIY 458
Query: 556 RCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMV 613
S++ V+D + H + +VID + S + + Q ++
Sbjct: 459 FMTFHGQQSLRAVMDAVEHCSYVHDIAHVVIDNVQFMIDVSGDSGSIDRFWKQDVLIQSF 518
Query: 614 KRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPI 673
+ FA CHV V HP++ + + N I G A + DN ++I +N D ++
Sbjct: 519 RSFASKFNCHVTLVMHPKKGMDGINLSIN--SIFGGAKAAQEADNVMII-QNYDTDSFVK 575
Query: 674 DRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
+ ++ +N+ G +G L +N+ + EY
Sbjct: 576 KKY---LQISKNRFSGDLGRMSLHFNKSSFEY 604
>gi|431838895|gb|ELK00824.1| Twinkle protein, mitochondrial [Pteropus alecto]
Length = 656
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 130/583 (22%), Positives = 226/583 (38%), Gaps = 88/583 (15%)
Query: 152 SEELSLSLFLDEDGFSAVWMCFRAKCGW---KGSTSALVDNNRSQSSLKKFSKMK---TI 205
S S SLF+++ + M A+ W + S D +R L + + + I
Sbjct: 74 SATTSFSLFINKTTGRFLCMTSLAEGSWEDFQASVEGRRDGDREGVLLSEVPEAEDSEEI 133
Query: 206 REITEDSLEL----EPLGNEL-RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG 260
R I + ++ L EP +L R F ++ +TL+R V R +V FP++ G
Sbjct: 134 RRIWDRAIPLWELPEPKEAQLARVMFGLTKVTDDTLKRFSVRYLRPARSLV--FPWFSPG 191
Query: 261 KLVNCKYRDFNKKFWQEKDTEKVFY---------------GLDDI-EGESDIIIVEGEMD 304
L + R K E + V Y GL I + ++++ E+D
Sbjct: 192 SL---RLRGL-KLLQAEGQGDGVHYVETTVPRPGAYHNLFGLPLINRRDVEVVLTSRELD 247
Query: 305 KLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGD 364
L++ ++ L +++P G + + +P YL+Q RI+L D
Sbjct: 248 SLALNQSTGLPTLALPRGI-ACLPPALLP----------------YLEQFRRIVLWLGDD 290
Query: 365 PPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPI 424
A+ AR++ +RC VR P + N L L ++ +A
Sbjct: 291 LRSWEAAKLFARKLNPKRCSLVR-PGDQQPRPLEALNRGL------NLSRILRSALPAWH 343
Query: 425 MGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGK 480
+ +FR +E+ S E W +L +L G ELT+ TG SGK
Sbjct: 344 KSIVSFRQLREEV---LGELSNVEQVAGVRWSRFPDLSRLLKGHRKGELTVFTGPTGSGK 400
Query: 481 SEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540
+ +I ++ G + S E AR +L + + ER+ E+
Sbjct: 401 TTFISEYALDLCTQ-GVNTLWGSFEISNVRLARIMLTQF------------AVERLE-EQ 446
Query: 541 FEQGKAWLS--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
++ W L +I+ V+D + AV + + +VID + +
Sbjct: 447 LDKYDEWADRFEDLPLYFMTFHGQQNIRTVIDTMQHAVYVYDICHVVIDNLQFMMGHEQL 506
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
S ++ ++FA +CHV V HPR+ + + I GSA + DN
Sbjct: 507 STDRIAAQDYIVGAFRKFATDSSCHVTLVIHPRKEDD--DKELQTASIFGSAKASQEADN 564
Query: 659 GIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
++I ++R GP R +QV +N+ G +G L +N+
Sbjct: 565 -VLILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 602
>gi|344256942|gb|EGW13046.1| Twinkle protein, mitochondrial [Cricetulus griseus]
Length = 690
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 111/498 (22%), Positives = 196/498 (39%), Gaps = 71/498 (14%)
Query: 223 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYRDFNKKFW 275
R F ++ +TLRR V R +V FP++ G KL+ + + N+ +
Sbjct: 178 RVMFGLSKVTDDTLRRFSVRYLRSTRSLV--FPWFTPGGSGLRGLKLLGAEGQG-NEVQY 234
Query: 276 QEKDTEKV-----FYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSK 329
E + +GL I ++++++ E+D L++ ++ L +S+P G +
Sbjct: 235 VETTIPRPGAYHNLFGLPLISRRDAEVVLTSRELDSLALSQSTGLPTLSLPRGT-VCLPP 293
Query: 330 KNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWP 389
+P YL+Q RI+ D A+ AR++ +RC VR P
Sbjct: 294 ALLP----------------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVR-P 336
Query: 390 KKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF 449
+ N+ L +L ++ A + +FR +E+ S E
Sbjct: 337 GNQQPRPLEALNQGL------SLPRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQ 387
Query: 450 GISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 388 AAGVRWSRFPDLNRLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFE 446
Query: 506 NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS--NTFSLIRCENDSLP 563
AR +L + + R+ E+ ++ + W L
Sbjct: 447 ISNVRLARVMLTQF------------AVTRLE-EQLDKYEEWADRFEDLPLYFMTFHGQQ 493
Query: 564 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623
SI+ V+D + AV + V +VID + S ++ ++FA ++CH
Sbjct: 494 SIRSVVDTMQHAVYVYDVCHVVIDNLQFMMGHEQFSTDRIAAQDYIVGAFRKFATDNSCH 553
Query: 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRK 682
V V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 554 VTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS--- 607
Query: 683 VRNKVVGTIGEAFLSYNR 700
+N+ G +G L +N+
Sbjct: 608 -KNRFDGDVGVFPLEFNK 624
>gi|410975924|ref|XP_003994377.1| PREDICTED: twinkle protein, mitochondrial isoform 1 [Felis catus]
Length = 684
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 134/580 (23%), Positives = 229/580 (39%), Gaps = 90/580 (15%)
Query: 156 SLSLFLDEDGFSAVWMCFRAKCGW---KGSTSALVDNNRSQSSLKKFSKMK---TIREIT 209
S SLF+D+ + M A+ W + S D R L + +++ +R I
Sbjct: 99 SFSLFIDKTTGRFLCMTSLAEGSWEDFQASVEGRGDGAREGVLLSEAPEVEDSEEVRRIW 158
Query: 210 EDSLEL----EPLGNEL-RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVN 264
+ ++ L EP +L R F ++ +TLRR V R +V FP+ G L
Sbjct: 159 DRAVPLWELPEPEEAQLARVMFGLTRVTDDTLRRFNVRYLRPARSLV--FPWLSPGGLGL 216
Query: 265 CKYRDFNKK------FWQEKDTEKV-----FYGLDDI-EGESDIIIVEGEMDKLSMEEAG 312
+ + ++E + +GL I + ++++ E+D L++ ++
Sbjct: 217 RGLKLLGAEGQGDGVHYKETTIPRPGVYCNLFGLPLISRRDVEVVLTSRELDSLALNQST 276
Query: 313 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 372
L +++P G + + +P YL+Q RI+L D A+
Sbjct: 277 GLPTLALPRGT-ACLPPALLP----------------YLEQFRRIVLWLGDDLRSWEAAK 319
Query: 373 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRD 432
AR++ +RC VR P + N L +L ++ A + +FR
Sbjct: 320 LFARKLNPKRCSLVR-PGDRQPRPLEALNRGL------SLSRILRTALPAWHKSIVSFRQ 372
Query: 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWID--A 486
+E+ S E W +L +L G ELT+ TG SGK+ +I A
Sbjct: 373 LREEV---LGELSNVEQAAGIRWNRFPDLNRLLKGHRKGELTVFTGPTGSGKTTFISEYA 429
Query: 487 L-ICNINEHAGWKFVLCSMENKVR----EHARKLLEKHIKKPFFEANYGGSAERMTVEEF 541
L +C + W S R + A LE+ + K Y A+R F
Sbjct: 430 LDLCTQGVNTLWGSFEISNVRLARVMLTQFAVGRLEEQLDK------YDEWADR-----F 478
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
E L F + SI+ V+D + AV + + +VID + P+S
Sbjct: 479 ED----LPLYFMTFHGQQ----SIRTVIDTMQHAVYVYDICHVVIDNLQFMMGHEPLSTD 530
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 661
++ ++FA ++CHV V HPR+ + + I GSA + DN ++
Sbjct: 531 RIAAQDYIVGAFRKFATDNSCHVTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VL 587
Query: 662 IHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
I ++R GP R +QV +N+ G +G L +N+
Sbjct: 588 ILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 623
>gi|422023029|ref|ZP_16369535.1| hypothetical protein OO7_10807 [Providencia sneebia DSM 19967]
gi|414094759|gb|EKT56423.1| hypothetical protein OO7_10807 [Providencia sneebia DSM 19967]
Length = 368
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query: 351 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDAN----EVLMY 406
L + + I L+ D D G+ A+E+A R+G RC V PKK D++ A E++ Y
Sbjct: 29 LDRFTEIWLSLDADEVGREAAKEIANRLGEYRCRLVSLPKK-DINECLQAGITQEEIIKY 87
Query: 407 LGPGALKEVVENAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVL 465
L E A + L + R++ D I A+Y + +++ + W LN ++
Sbjct: 88 L---------ETATYFDPDELCSAREFMQDTIQAFYGK---EQYLFRSPWETLNHQFSFR 135
Query: 466 PGELTIVTGVPNSGKSEWIDALIC 489
ELTI+ GV GKSE + ++C
Sbjct: 136 ESELTILNGVNGHGKSEILGHMLC 159
>gi|443670600|ref|ZP_21135733.1| Replicative DNA helicase [Rhodococcus sp. AW25M09]
gi|443416825|emb|CCQ14070.1| Replicative DNA helicase [Rhodococcus sp. AW25M09]
Length = 464
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 111/267 (41%), Gaps = 19/267 (7%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
DEID+ R G G+ TG+ L+E+ N L PG++ IV P GKS + + +
Sbjct: 191 MDEIDSIASR-GGISLGVPTGFAELDEITNGLHPGQMIIVAARPGVGKSTLSMDFMRSCS 249
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 552
G V+ S+E E +LL K + G +MT +++ + +S
Sbjct: 250 IKHGMPSVIFSLEMSRTEIVMRLLSAEAKIKLGDMRSG----KMTDDDWTKLARRMSEIS 305
Query: 553 SLIRCENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 610
+DS P++ + AKA L R+G++ +V+D + + V + E VS
Sbjct: 306 EAPLFVDDS-PNLTMMEIRAKARRLKQRNGLKLIVVDYLQLMSSGKKVESRQQE-VSDFS 363
Query: 611 TMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----- 664
+K A+ C V V R + P + D+ S D I++HR
Sbjct: 364 RQLKLLAKELECPVVAVCQLNRGPEQRTDKKPMVSDLRESGSLEQDADMVILLHRPDAIE 423
Query: 665 NRDPEAGPIDRVQVCVRKVRNKVVGTI 691
DP G D + + K RN TI
Sbjct: 424 RDDPRGGEAD---LILGKHRNGPTATI 447
>gi|10438015|dbj|BAB15148.1| unnamed protein product [Homo sapiens]
gi|21707100|gb|AAH33762.1| C10orf2 protein [Homo sapiens]
Length = 506
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 105/494 (21%), Positives = 191/494 (38%), Gaps = 69/494 (13%)
Query: 226 FAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYR----DFNKKF 274
F ++ +TL+R V R +V FP++ G KL+ K + + +
Sbjct: 2 FGLTKVTDDTLKRFSVRYLRPARSLV--FPWFSPGGSGLRGLKLLEAKCQGDGVSYEETT 59
Query: 275 WQEKDTEKVFYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVP 333
+GL I ++++++ E+D L++ ++ L +++P G + + +P
Sbjct: 60 IPRPSAYHNLFGLPLISRRDAEVVLTSRELDSLALNQSTGLPTLTLPRGT-TCLPPALLP 118
Query: 334 SEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKND 393
YL+Q RI+ D A+ AR++ +RC+ VR P
Sbjct: 119 ----------------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCFLVR-PGDQQ 161
Query: 394 VDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIST 453
+ N G L ++ A + +FR +E+ S E
Sbjct: 162 PRPLEALN------GGFNLSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGL 212
Query: 454 GWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 509
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 213 RWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYALDLCSQ-GVNTLWGSFEISNV 271
Query: 510 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS--NTFSLIRCENDSLPSIKW 567
AR +L + AE ++ ++ W L SI+
Sbjct: 272 RLARVMLTQF-------------AEGRLEDQLDKYDHWADRFEDLPLYFMTFHGQQSIRT 318
Query: 568 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 627
V+D + AV + + ++ID + +S ++ + ++FA + CHV V
Sbjct: 319 VIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIGVFRKFATDNNCHVTLV 378
Query: 628 AHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNK 686
HPR+ + + I GSA + DN ++I ++R GP R +QV +N+
Sbjct: 379 IHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNR 431
Query: 687 VVGTIGEAFLSYNR 700
G +G L +N+
Sbjct: 432 FDGDVGVFPLEFNK 445
>gi|395741924|ref|XP_002821139.2| PREDICTED: twinkle protein, mitochondrial [Pongo abelii]
Length = 506
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 107/495 (21%), Positives = 193/495 (38%), Gaps = 71/495 (14%)
Query: 226 FAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYRDFNKKFWQEK 278
F ++ +TL+R V R +V FP++ G KL+ K + N ++E
Sbjct: 2 FGLTKVTDDTLKRFSVRYLRPARSLV--FPWFSPGGSGLRGLKLLEAKCQG-NGVSYEET 58
Query: 279 DTEKV-----FYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 332
+ +GL I ++++++ E+D L++ ++ L +++P G + + +
Sbjct: 59 TIPRPSAYHNLFGLPLISRRDAEVVLTSRELDSLALNQSTGLPTLTLPRGT-TCLPPALL 117
Query: 333 PSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKN 392
P YL+Q RI+ D A+ AR++ +RC+ VR P
Sbjct: 118 P----------------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCFLVR-PGDQ 160
Query: 393 DVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIS 452
+ N G L ++ A + +FR +E+ S E
Sbjct: 161 HPRPLEALN------GGFNLSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAG 211
Query: 453 TGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 212 VRWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYALDLCSQ-GVNTLWGSFEISN 270
Query: 509 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS--NTFSLIRCENDSLPSIK 566
AR +L + AE ++ ++ W L SI+
Sbjct: 271 VRLARVMLTQF-------------AEGRLEDQLDKYDHWADRFEDLPLYFMTFHGQQSIR 317
Query: 567 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 626
V+D + A+ + + +VID + +S ++ + ++FA + CHV
Sbjct: 318 TVIDTMQHAIYVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIIGVFRKFATDNNCHVTL 377
Query: 627 VAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRN 685
V HPR+ + I GSA + DN ++I ++R GP R +QV +N
Sbjct: 378 VIHPRKEDE--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KN 430
Query: 686 KVVGTIGEAFLSYNR 700
+ G +G L +N+
Sbjct: 431 RFDGDVGVFPLEFNK 445
>gi|423413993|ref|ZP_17391113.1| hypothetical protein IE1_03297 [Bacillus cereus BAG3O-2]
gi|423430223|ref|ZP_17407227.1| hypothetical protein IE7_02039 [Bacillus cereus BAG4O-1]
gi|401098660|gb|EJQ06671.1| hypothetical protein IE1_03297 [Bacillus cereus BAG3O-2]
gi|401120132|gb|EJQ27930.1| hypothetical protein IE7_02039 [Bacillus cereus BAG4O-1]
Length = 338
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 88/204 (43%), Gaps = 34/204 (16%)
Query: 225 YFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKK-FWQEKDTEKV 283
Y +R IS E + ++ R VVI + + NG+LVN KYR + K FW EKD + +
Sbjct: 137 YLGQRGISEEVQWQMKIGYDRFRQAVVIPW-FDTNGRLVNIKYRKVSSKVFWYEKDGKPI 195
Query: 284 ---FYGLDDIEGESDI---IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 337
YGL + +I + E E+D +S AG G + S N EQ
Sbjct: 196 GDLIYGLH-LAYRRNIKRAVYCEAEIDAMSFMTAGVF-------GLANGGSSFNERKAEQ 247
Query: 338 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV-GRERCWRVRWPKKNDVDH 396
K +++ D DP G+ L +EL + + G+ R V
Sbjct: 248 ILK-----------SPIEELVIVADNDPAGEKLRKELEKYLKGKIRL------TNGYVRR 290
Query: 397 FKDANEVLMYLGPGALKEVVENAE 420
FKDAN L+ G +L VV+N E
Sbjct: 291 FKDANVALIKEGASSLVSVVDNVE 314
>gi|419011917|ref|ZP_13559284.1| hypothetical protein ECDEC1D_0750 [Escherichia coli DEC1D]
gi|377863851|gb|EHU28653.1| hypothetical protein ECDEC1D_0750 [Escherichia coli DEC1D]
Length = 375
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 129/319 (40%), Gaps = 38/319 (11%)
Query: 364 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 422
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 12 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 64
Query: 423 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 481
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 65 DPEELYSAREFYQDTINAFYGK---QQYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 121
Query: 482 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 538
E + + G K + S+E K ++L + P E + +
Sbjct: 122 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 172
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 173 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 224
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 225 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 279
Query: 659 GIVIHRNRDPEAGPIDRVQ 677
+I RN+ E + RVQ
Sbjct: 280 LFIIWRNKARERA-LQRVQ 297
>gi|433610185|ref|YP_007042554.1| Replicative DNA helicase [Saccharothrix espanaensis DSM 44229]
gi|407888038|emb|CCH35681.1| Replicative DNA helicase [Saccharothrix espanaensis DSM 44229]
Length = 464
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 135/322 (41%), Gaps = 34/322 (10%)
Query: 393 DVDHFKDANEVLMYLGPGALKEVVE--NAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 450
DVD D + +Y EV E E Y ++ + DEIDA R G G
Sbjct: 156 DVDEVVDRAQAAIY-------EVTERRTTEDYVVLEEL-LQPTMDEIDAIASR-GGSSLG 206
Query: 451 ISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENK 507
I TG+ L+EL N L PG++ IV P GKS +D A C++ G + S+E
Sbjct: 207 IPTGFADLDELTNGLHPGQMIIVAARPGVGKSTLGLDFARSCSVKH--GLTSAIFSLEMS 264
Query: 508 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 567
E ++L K + G RM+ +++ + +S +DS P++
Sbjct: 265 KTEIVMRMLSAEAKIRLGDMRGG----RMSDDDWTRLARRMSEISEAPMFVDDS-PNLTM 319
Query: 568 VLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 625
+ AKA L RH +R +++D Y +L S++ + VS+ +K A+ V
Sbjct: 320 MEIRAKARRLKQRHDLRLVIVD-YLQLMSSGKRSESRQQEVSEFSRNLKLIAKELEVPVI 378
Query: 626 FVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVC 679
++ R + P L D+ S D I+I+R DP AG D +
Sbjct: 379 AISQLNRGPEQRTDKRPQLSDLRESGSLEQDADMVILINRPDAWERDDPRAGEAD---LI 435
Query: 680 VRKVRNKVVGTIGEAF-LSYNR 700
+ K R TI A L Y+R
Sbjct: 436 IAKHRAGPTATITVAHQLHYSR 457
>gi|291297673|ref|YP_003508951.1| replicative DNA helicase [Stackebrandtia nassauensis DSM 44728]
gi|290566893|gb|ADD39858.1| replicative DNA helicase [Stackebrandtia nassauensis DSM 44728]
Length = 474
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 111/275 (40%), Gaps = 35/275 (12%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
DEI+A ++G G+ TG+ L+ L N L PG+L IV G P +GKS I +
Sbjct: 202 LDEIEAV-GESAGAMTGVPTGFADLDRLLNGLQPGQLIIVAGRPGAGKSTAAMDFIRHAA 260
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGG--------SAERMTVEEFEQG 544
H + S+E E ++L + P G A RM E +
Sbjct: 261 LHHQQAAAMFSLEMSKVEIVMRVLSAETRVPLHVLRSGQLSDDDWTRLARRMG--EISEA 318
Query: 545 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTE 602
++ +T PS+ + AKA L RH ++ +V+D + + V +
Sbjct: 319 PMFVDDT-----------PSMTLMEIRAKARRLKQRHNLKLIVVDYLQLMSSPKRVESRQ 367
Query: 603 TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 661
E VS++ +K A+ C V VA R + P L D+ S D I+
Sbjct: 368 QE-VSEISRGMKLLAKEVECPVIAVAQLNRGPEQRTDKRPQLSDLRESGSLEQDADVVIL 426
Query: 662 IHRN-----RDPEAGPIDRVQVCVRKVRNKVVGTI 691
+HR+ P AG D + V K RN TI
Sbjct: 427 LHRDDYYDKESPRAGEADMI---VAKHRNGATDTI 458
>gi|262067762|ref|ZP_06027374.1| DNA primase [Fusobacterium periodonticum ATCC 33693]
gi|291378488|gb|EFE86006.1| DNA primase [Fusobacterium periodonticum ATCC 33693]
Length = 761
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 73/171 (42%), Gaps = 32/171 (18%)
Query: 245 RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDT-EKVFYGLDDIEGESDIIIVEGEM 303
R G + P +V KYR +KK W EK + +I ++IVEGE+
Sbjct: 109 RMGTHESMMIPVTNGETVVGIKYRSLDKKLWSEKGSCLDYLLNWQNITDFDYLVIVEGEI 168
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D LS EAG N VS+P GA T + + K +L + +II+ATD
Sbjct: 169 DLLSALEAGVENTVSLPSGA---------------TNIKCIKTQKNWLSKFQKIIIATDD 213
Query: 364 DPPGQALAEELARRVGRER------CWRVRWPKKNDVDHFKDANEVLMYLG 408
D G E +R+ E ++ + KK KD NEVL+ G
Sbjct: 214 DEAGV----EARKRIVHELRDLLIPLYKTYFYKK------KDVNEVLVKNG 254
>gi|126273497|ref|XP_001379462.1| PREDICTED: twinkle protein, mitochondrial-like [Monodelphis
domestica]
Length = 987
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 109/496 (21%), Positives = 195/496 (39%), Gaps = 67/496 (13%)
Query: 223 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYRD----FN 271
RA F +S TL+R +V R +V FP++ G KL+ + + +
Sbjct: 180 RAMFNLAKVSDATLKRFQVRYLRAARSLV--FPWFSPGGLSLRGLKLLKAEGKGDGVCYL 237
Query: 272 KKFWQEKDTEKVFYGLDDIEGESDIIIVEG-EMDKLSMEEAGFLNCVSVPDGAPSSVSKK 330
+ +GL I +++ G E+D L++ +A L +++P G + +
Sbjct: 238 ETTLPRPSAYHNLFGLPLISRRDVEVVLTGRELDSLALHQATGLPTLALPRGL-ACLPPT 296
Query: 331 NVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK 390
+P YL+Q RI+L D A+ AR++ +RC VR
Sbjct: 297 LLP----------------YLEQFRRIVLWLGDDLRAWEAAKLFARKLNPKRCSLVR--- 337
Query: 391 KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 450
H + + L L+++++ A + +FR +E+ S E
Sbjct: 338 -PGDQHPRPLEALTQGLN---LQKILKGALPAGHKSIVSFRQLREEV---LGELSNVEQV 390
Query: 451 ISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 391 AGVRWGRYPDLNRLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEI 449
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS--NTFSLIRCENDSLPS 564
AR +L + + G E E+ E+ W +L +
Sbjct: 450 SNVRLARIMLTQFVM---------GRLE----EKLEEYDKWADRFEDLALYFMTFHGQQN 496
Query: 565 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624
I+ V+D K AV + + ++ID + Q +S ++ ++FA ++CHV
Sbjct: 497 IRTVIDTMKHAVYVYDICHVIIDNLQFMMGQEQLSSDRIAVQDYIVGAFRKFATDNSCHV 556
Query: 625 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 684
V HPR+ + I GSA + DN ++I +++ GP R ++ +
Sbjct: 557 TLVIHPRKEDG--DKELQTASIFGSAKASQEADN-VLILQDKKLATGPGKRY---LQVAK 610
Query: 685 NKVVGTIGEAFLSYNR 700
N+ G +G L +N+
Sbjct: 611 NRFDGDVGVFPLEFNK 626
>gi|383766387|ref|YP_005445368.1| replicative DNA helicase [Phycisphaera mikurensis NBRC 102666]
gi|381386655|dbj|BAM03471.1| replicative DNA helicase [Phycisphaera mikurensis NBRC 102666]
Length = 493
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 117/283 (41%), Gaps = 34/283 (12%)
Query: 430 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALI 488
++ FD+++A + G+ TG++ L+E+ N L PGEL IV P+ GK+ A
Sbjct: 209 LQETFDKLEAQDGQVI---TGVETGFKDLDEMTNGLQPGELIIVAARPSMGKT----AFA 261
Query: 489 CNINEH----AGWKFVLCSMENKVREHARKLL------EKHIKKPFFEANYGGSAERMTV 538
N++EH AG + S+E ++ A++LL H + + S V
Sbjct: 262 LNVSEHIGAVAGRPVGVFSLEMSKQQLAQRLLCSRSQVNSHRLRRNMLSREDFSKLSHAV 321
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
E + ++ +T L ++ + A+ R+G+ L++D Y +L
Sbjct: 322 GELSEAPIYIDDTAGL---------TLMGLRAKARRMKQRYGIEALMVD-YLQLMSNPST 371
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCD 657
VS + VK A+ C + ++ R G P + D+ S D
Sbjct: 372 KDGRQNEVSAISRGVKALARELECPIICLSQLNRAAEQREGHRPRMSDLRESGSIEQDAD 431
Query: 658 NGIVIHRNR-----DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+++HR DPE + +V V K RN GT+ F
Sbjct: 432 VIMMLHREDYYHRGDPEHVDNNEAEVIVTKQRNGPTGTVKLMF 474
>gi|421745200|ref|ZP_16183058.1| replicative DNA helicase [Cupriavidus necator HPC(L)]
gi|409776222|gb|EKN57641.1| replicative DNA helicase [Cupriavidus necator HPC(L)]
Length = 463
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 117/282 (41%), Gaps = 38/282 (13%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR T+ D G+ TG+ L+ + + + PG+L IV G P+ GK+ A NI
Sbjct: 180 ERIDELYHRDTTTDVTGVPTGFIDLDRMTSGMQPGDLIIVAGRPSMGKT----AFSLNIG 235
Query: 493 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH G + SME + A ++L GS R+ G+
Sbjct: 236 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 281
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T ++ R + D P++ + ++ + G GL+I Y +L
Sbjct: 282 EDWPRLTHAIQRMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 341
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 656
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 GGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 401
Query: 657 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
D + I+R+ +P++ ++ + K RN +GT+ FL
Sbjct: 402 DVILFIYRDEVYNPDSQDKGTAEIIIGKQRNGPIGTVRLTFL 443
>gi|448937050|gb|AGE60593.1| DNA primase [Pelagibacter phage HTVC019P]
Length = 532
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 108/470 (22%), Positives = 195/470 (41%), Gaps = 61/470 (12%)
Query: 252 IAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESD-IIIVEGEMDKLSME 309
IA Y + +LV K R +K F W E +G + G+ I + EGE+D LS+
Sbjct: 93 IANYYNDSKELVAQKLRYPSKDFQWLGNPKEAGLFGQETCRGKGKYITVTEGEIDCLSIS 152
Query: 310 EA--GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPG 367
+A + VS+ GA + KK++ + +L+ +I D D G
Sbjct: 153 QAFGNDFDFVSIKTGAAGA--KKDIQKSLE------------FLEGYENVIFMYDQDVHG 198
Query: 368 QALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGL 427
A E A+ + + P KDANE+L+ LK+ + NA+ Y G+
Sbjct: 199 VEAAVECAKLLTPNKAKIASLP-------LKDANEMLLAGKTDELKKAMWNAKPYRPDGI 251
Query: 428 FNFRDYFDEI---DAYYHRTSGDEFGISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEW 483
+ FD+I D Y +++LN+ + + GELT +T GKS +
Sbjct: 252 VLGSEIFDDIMKEDKY--------VTAQYPFKSLNDKTHGLRKGELTTITAGTGVGKSSF 303
Query: 484 IDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFE 542
+ + + + G ++ ++E ++ A ++ H+KKP G S ++ E F+
Sbjct: 304 CRHVALDLLKQDFGVGYI--ALEESIKRSALGIMGVHLKKPLHLTREGISETQLQ-ETFK 360
Query: 543 Q----GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
G +L N F DSL + + LAK+ + V + + L +
Sbjct: 361 STIGNGNFYLYNHFG--NTVADSL--LNKIRYLAKSCEVDFVVLDHLHMALSALGDEH-- 414
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN----WVGEPPNLYDISGSAHFIN 654
+ E + + ++ ++ + V ++H R+ G+ + + GSA
Sbjct: 415 TSDERKLIDYFVSKLRTLVEETGIGVILISHLRRSEGDKGFEDGKEVTMNSLRGSASIGQ 474
Query: 655 KCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 703
D ++I NRD ++ D+ + ++N+ G G+A L Y+ TG
Sbjct: 475 LSD--LIIGINRDIKS---DKKLANLTILKNRFSGETGKACTLLYDLDTG 519
>gi|255304946|ref|NP_001157284.1| twinkle protein, mitochondrial isoform B [Homo sapiens]
gi|14582618|gb|AAK69559.1|AF292005_1 truncated putative T7-like mitochondrial DNA helicase [Homo
sapiens]
Length = 582
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 106/516 (20%), Positives = 193/516 (37%), Gaps = 72/516 (13%)
Query: 146 KCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGW---KGSTSALVDNNRSQSSLKK---F 199
+ G S SLF+D+ + M A+ W + S D R L K F
Sbjct: 89 QLKGQTGVTTSFSLFIDKTTGHFLCMTSLAEGSWEDFQASVEGRGDGAREGFLLSKAPEF 148
Query: 200 SKMKTIREITEDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGHEVVIAF 254
+ +R I ++ L L ++ A+ + ++ +TL+R V R +V F
Sbjct: 149 EDSEEVRRIWNRAIPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPARSLV--F 206
Query: 255 PYWRNG-------KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG-ESDIIIVEGE 302
P++ G KL+ K + + + +GL I ++++++ E
Sbjct: 207 PWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLISRRDAEVVLTSRE 266
Query: 303 MDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATD 362
+D L++ ++ L +++P G + + +P YL+Q RI+
Sbjct: 267 LDSLALNQSTGLPTLTLPRGT-TCLPPALLP----------------YLEQFRRIVFWLG 309
Query: 363 GDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422
D A+ AR++ +RC+ VR P + N G L ++ A
Sbjct: 310 DDLRSWEAAKLFARKLNPKRCFLVR-PGDQQPRPLEALN------GGFNLSRILRTALPA 362
Query: 423 PIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL----PGELTIVTGVPNS 478
+ +FR +E+ S E W +L +L GELT+ TG S
Sbjct: 363 WHKSIVSFRQLREEV---LGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGS 419
Query: 479 GKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTV 538
GK+ +I ++ G + S E AR +L + AE
Sbjct: 420 GKTTFISEYALDLCSQ-GVNTLWGSFEISNVRLARVMLTQF-------------AEGRLE 465
Query: 539 EEFEQGKAWLS--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR 596
++ ++ W L SI+ V+D + AV + + ++ID +
Sbjct: 466 DQLDKYDHWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHE 525
Query: 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ 632
+S ++ + ++FA + CHV V HPR+
Sbjct: 526 QLSTDRIAAQDYIIGVFRKFATDNNCHVTLVIHPRK 561
>gi|383783254|ref|YP_005467821.1| putative replicative DNA helicase [Actinoplanes missouriensis 431]
gi|381376487|dbj|BAL93305.1| putative replicative DNA helicase [Actinoplanes missouriensis 431]
Length = 484
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 110/275 (40%), Gaps = 35/275 (12%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
DEI+A G G+ TG++ L+ L N L G+L IV G P GKS N
Sbjct: 212 LDEIEAV-GAAGGVMTGVPTGFQDLDRLLNGLHAGQLIIVAGRPGLGKSTVSMDFARNAA 270
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYG--------GSAERMTVEEFEQG 544
+G + S+E E +LL + P G A RM E Q
Sbjct: 271 IQSGHASAIFSLEMSKIEMVMRLLSAEARVPLHTLRSGQLSDDDWTKLARRMG--EISQA 328
Query: 545 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTE 602
++ +T P++ + AKA L RH +R LVID Y +L +++
Sbjct: 329 PIFVDDT-----------PNMNLMEIRAKARRLKQRHNLRLLVID-YLQLMSSPKKTESR 376
Query: 603 TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 661
+ VS++ +K A+ C V V+ R + P L D+ S D I+
Sbjct: 377 QQEVSELSRGLKLLAKEIECPVIAVSQLNRGPEQRTDKRPQLSDLRESGSIEQDADVVIL 436
Query: 662 IHRN-----RDPEAGPIDRVQVCVRKVRNKVVGTI 691
+HR+ P AG D + V K RN T+
Sbjct: 437 LHRDDYYDKESPRAGEADFI---VAKHRNGPTDTV 468
>gi|426365912|ref|XP_004050010.1| PREDICTED: twinkle protein, mitochondrial isoform 2 [Gorilla
gorilla gorilla]
Length = 582
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 106/516 (20%), Positives = 193/516 (37%), Gaps = 72/516 (13%)
Query: 146 KCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGW---KGSTSALVDNNRSQSSLKK---F 199
+ G S SLF+D+ + M A+ W + S D R L K F
Sbjct: 89 QLKGQTGVTTSFSLFIDKTTGRFLCMTSLAEGSWEDFQASVEGRGDGAREGFLLSKAPEF 148
Query: 200 SKMKTIREITEDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGHEVVIAF 254
+ +R I ++ L L ++ A+ + ++ +TL+R V R +V F
Sbjct: 149 EDSEEVRRIWNRAIPLWELPDQEEIQLADTMFGLTKVTDDTLKRFSVRYLRPARSLV--F 206
Query: 255 PYWRNG-------KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDI-EGESDIIIVEGE 302
P++ G KL+ K + + + +GL I ++++++ E
Sbjct: 207 PWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLISRRDAEVVLTSRE 266
Query: 303 MDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATD 362
+D L++ ++ L +++P G + + +P YL+Q RI+
Sbjct: 267 LDSLALNQSTGLPTLTLPRGT-TCLPPALLP----------------YLEQFRRIVFWLG 309
Query: 363 GDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422
D A+ AR++ +RC+ VR P + N G L ++ A
Sbjct: 310 DDLRSWEAAKLFARKLNPKRCFLVR-PGDQQPRPLEALN------GGFNLSRILRTALPA 362
Query: 423 PIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL----PGELTIVTGVPNS 478
+ +FR +E+ S E W +L +L GELT+ TG S
Sbjct: 363 WHKSIVSFRQLREEV---LGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGS 419
Query: 479 GKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTV 538
GK+ +I ++ G + S E AR +L + AE
Sbjct: 420 GKTTFISEYALDLCSQ-GVNTLWGSFEISNVRLARVMLTQF-------------AEGRLE 465
Query: 539 EEFEQGKAWLS--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR 596
++ ++ W L SI+ V+D + AV + + ++ID +
Sbjct: 466 DQLDKYDHWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHE 525
Query: 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ 632
+S ++ + ++FA + CHV V HPR+
Sbjct: 526 QLSTDRIAAQDYIIGVFRKFATDNNCHVTLVIHPRK 561
>gi|380019396|ref|XP_003693593.1| PREDICTED: twinkle protein, mitochondrial-like [Apis florea]
Length = 447
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 141/364 (38%), Gaps = 38/364 (10%)
Query: 350 YLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGP 409
Y++ ++IL D D A A+++ +RC+ +R D+ + Y
Sbjct: 102 YMESFKKLILWFDNDEVSWYTARHFAKKLNEKRCYLIR---PTDLQPRPKLAAEMNY--- 155
Query: 410 GALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP--- 466
+++NA+ + F+D +EI + W+ L +L
Sbjct: 156 -NFNSILKNAQPLWHKSIITFQDLKEEILIDLQNNDKVQ---GVKWKRYTTLNRILKGHR 211
Query: 467 -GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 525
GE TI+TG GK+ ++ ++ G + S E + R +L++ + P
Sbjct: 212 RGEFTILTGPTGCGKTTFMSEYSLDL-AMQGINTLWGSFEIRNVRLVRTMLQQMVGVPLS 270
Query: 526 E--ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRG 583
E N+ A FE+ + TF SIK V+D + A H +
Sbjct: 271 ENLENFDTYA-----NAFEKLPIYFM-TFH-------GQQSIKIVMDAVEHATYVHDIAH 317
Query: 584 LVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPP 641
+VID + S+ + Q ++ + FA + CHV + HPR+ + E
Sbjct: 318 VVIDNVQFMMGMTNDSKYVDRFWKQDDIIAKFRNFATVYNCHVTMIIHPRKERS--SEEL 375
Query: 642 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRV 701
I GSA + DN ++I NR +QV +N+ G +G L +++
Sbjct: 376 TTSSIFGSAKASQEADNVLIIQDNRLTSIRGKKYLQVA----KNRYSGDLGIMVLDFDKS 431
Query: 702 TGEY 705
+ Y
Sbjct: 432 SLSY 435
>gi|194289919|ref|YP_002005826.1| replicative DNA helicase [Cupriavidus taiwanensis LMG 19424]
gi|193223754|emb|CAQ69761.1| replicative DNA helicase [Cupriavidus taiwanensis LMG 19424]
Length = 463
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 117/282 (41%), Gaps = 38/282 (13%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR T+ D G+ TG+ L+++ + + PG+L IV G P+ GK+ A NI
Sbjct: 180 ERIDELYHRDTTTDVTGVPTGFIDLDKMTSGMQPGDLIIVAGRPSMGKT----AFSLNIG 235
Query: 493 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH G + SME + A ++L GS R+ G+
Sbjct: 236 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 281
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T ++ R + D P++ + ++ + G GL+I Y +L
Sbjct: 282 EDWPRLTHAIQRMNDTQLYIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 341
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 656
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 GGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 401
Query: 657 DNGIVIHRNRDPEAGPIDR--VQVCVRKVRNKVVGTIGEAFL 696
D + I+R+ A D+ ++ + K RN +GT+ FL
Sbjct: 402 DVILFIYRDEVYNADSQDKGTAEIIIGKQRNGPIGTVRLTFL 443
>gi|294782201|ref|ZP_06747527.1| toprim domain-containing protein [Fusobacterium sp. 1_1_41FAA]
gi|294480842|gb|EFG28617.1| toprim domain-containing protein [Fusobacterium sp. 1_1_41FAA]
Length = 760
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 73/171 (42%), Gaps = 32/171 (18%)
Query: 245 RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDT-EKVFYGLDDIEGESDIIIVEGEM 303
R G + P +V KYR +KK W EK + +I ++IVEGE+
Sbjct: 108 RMGTHESMIIPVTNGETVVGIKYRSLDKKLWSEKGSCLDYLLNWQNITDFDYLVIVEGEI 167
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D LS EAG N VS+P GA T + + K +L + +II+ATD
Sbjct: 168 DLLSALEAGVENTVSLPSGA---------------TNIKCIKMQKNWLSKFQKIIIATDD 212
Query: 364 DPPGQALAEELARRVGRER------CWRVRWPKKNDVDHFKDANEVLMYLG 408
D G E +R+ E ++ + KK KD NEVL+ G
Sbjct: 213 DEAGV----EARKRIVHELRDLLIPLYKTYFYKK------KDVNEVLVKNG 253
>gi|336120758|ref|YP_004575544.1| replicative DNA helicase [Microlunatus phosphovorus NM-1]
gi|334688556|dbj|BAK38141.1| replicative DNA helicase [Microlunatus phosphovorus NM-1]
Length = 471
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 127/310 (40%), Gaps = 25/310 (8%)
Query: 404 LMYLGPGALKEVVE--NAELYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGI 451
+ Y G G + E+V+ AE+Y + DY DE++A R G G+
Sbjct: 157 MSYSGEGEVDEIVDRAQAEVYAVTERRATEDYKPLSELMQPTLDEMEAISSR-DGSFGGV 215
Query: 452 STGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 510
TG+ L+EL N L PG++ IV P GKS L + + G V+ S+E E
Sbjct: 216 PTGFSELDELTNGLHPGQMVIVAARPGCGKSTLALDLARSASIKNGLTSVIFSLEMSQIE 275
Query: 511 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLD 570
+LL + P G RM+ +++ + A + +DS P++ +
Sbjct: 276 ITMRLLSAEAQIPLGHIRGG----RMSDDDWSRVAAKMGQVSEAPLYIDDS-PNLTMMEI 330
Query: 571 LAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 628
AKA L RH ++ +VID + + V + E VS+ +K A+ V ++
Sbjct: 331 RAKARRLKQRHDLKLVVIDYIQLMTSGKRVESRQLE-VSEFSRQIKLLAKELEVPVVALS 389
Query: 629 H-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRN 685
R + P L D+ S D I+++R D E+ V K RN
Sbjct: 390 QLNRGPEQRTDKRPMLSDLRESGSLEQDADMVILLNRPDLYDKESDRAGEADFDVAKHRN 449
Query: 686 KVVGTIGEAF 695
+I AF
Sbjct: 450 GPTKSITVAF 459
>gi|410582462|ref|ZP_11319568.1| replicative DNA helicase [Thermaerobacter subterraneus DSM 13965]
gi|410505282|gb|EKP94791.1| replicative DNA helicase [Thermaerobacter subterraneus DSM 13965]
Length = 444
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 116/273 (42%), Gaps = 22/273 (8%)
Query: 432 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICN 490
D F+ I+ Y G+ G+ TG+R L+ + L P EL I+ P+ GK+ ++ +
Sbjct: 169 DTFEHIERLYLH-QGETIGVPTGFRDLDSMLAGLHPSELIILAARPSQGKTTLALNMVAH 227
Query: 491 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE----RMT--VEEFEQG 544
H G+ + S+E + A +LL + G AE R+T + +
Sbjct: 228 AAAH-GYPVGVFSLEMSRDQLAMRLLAAEARLNQQRLRTGMLAEDDWPRLTDAIGRLSEL 286
Query: 545 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 604
++ +T +L SI V A+ H + LV+D Y +L H R +++ +
Sbjct: 287 PVFIDDTPNL---------SIMEVRARARRMKAEHDIGLLVLD-YLQLMHTRGRAESRQQ 336
Query: 605 YVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 663
+S++ +K A+ V ++ R + P L D+ S D + I+
Sbjct: 337 EISEISRSLKALARELKVPVLALSQLSRAVEQRQDRRPQLSDLRESGAIEQDADVVLFIY 396
Query: 664 RNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
N PE + V++ V K RN G++ FL
Sbjct: 397 HN--PEDAAENVVEIIVAKQRNGPTGSVKLYFL 427
>gi|302343159|ref|YP_003807688.1| replicative DNA helicase [Desulfarculus baarsii DSM 2075]
gi|301639772|gb|ADK85094.1| replicative DNA helicase [Desulfarculus baarsii DSM 2075]
Length = 463
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 116/279 (41%), Gaps = 38/279 (13%)
Query: 443 RTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G G++TG++AL+ L L PG+L I+ G P+ GK+ + + N G +
Sbjct: 181 KNKGQVLGVTTGFKALDRLTTGLQPGDLIIIAGRPSMGKTAFALNIAANAALRGGVPTAV 240
Query: 502 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN-- 559
S+E + +LL EA GS R Q + W + T + R
Sbjct: 241 FSLEMSAEQLGLRLLAS-------EARVSGSKIRSGF--LNQNQDWPNLTEAADRLSQAP 291
Query: 560 ---DSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
D P+I + +KA L+ H + GLV+ Y +L R S + + +S + +K
Sbjct: 292 IFIDDTPAITVLEMRSKARRLKSEHNL-GLVLVDYLQLMRGRANSDSREQEISDISRSLK 350
Query: 615 RFAQHHACHVWFVAHPRQLHNWVGEPPN----LYDISGSAHFINKCDNGIVIHRNR---- 666
A+ V ++ QL+ V E PN L D+ S D I+R++
Sbjct: 351 ALAKELDLPVVALS---QLNRKVEERPNKRPILSDLRESGAIEQDADVIAFIYRDKVYRQ 407
Query: 667 --------DPEAGPIDRV-QVCVRKVRNKVVGTIGEAFL 696
D P D + ++ + K RN GT+ AFL
Sbjct: 408 KSNKEDGDDAPVMPDDNIAEIIIGKQRNGPTGTVKLAFL 446
>gi|57107533|ref|XP_543974.1| PREDICTED: twinkle protein, mitochondrial isoform 2 [Canis lupus
familiaris]
Length = 684
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 125/573 (21%), Positives = 221/573 (38%), Gaps = 76/573 (13%)
Query: 156 SLSLFLDEDGFSAVWMCFRAKCGW---KGSTSALVDNNRSQSSLKKFSKMK---TIREIT 209
S SLF+D+ + M A+ W + S D R L + + + +R I
Sbjct: 99 SFSLFIDKTTGRFLCMTSLAEGSWEDFQASVEGRGDGAREGILLGEAPEAEDSEEVRRIW 158
Query: 210 EDSLEL----EPLGNEL-RAYFAERLISAETLRRNRVMQKRHGHEVVIAF--PYWRNGKL 262
+ ++ L EP+ +L R F ++ +TLRR V +V + P +
Sbjct: 159 DRAVPLWELPEPVEGQLARVMFGLTKVTDDTLRRFNVRYLWSARSLVFPWLSPGGLGLRG 218
Query: 263 VNCKYRDFNKKFWQEKDT----EKVFYGLDDI----EGESDIIIVEGEMDKLSMEEAGFL 314
+ + Q K+T V+Y L + + ++++ E+D L++ +A L
Sbjct: 219 LKLLGAEGQGDGVQYKETTIPRPGVYYNLFGLPLISRRDVEVVLTSRELDSLALNQATGL 278
Query: 315 NCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEEL 374
+++P G + + +P YL+Q RI+L D A+
Sbjct: 279 PTLALPRGI-ACLPPALLP----------------YLEQFRRIVLWLGDDLRSWEAAKLF 321
Query: 375 ARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF 434
AR++ +RC VR P + N L L ++ A + +FR
Sbjct: 322 ARKLNPKRCSLVR-PGDQQPRPLEALNRGL------NLSRILRTALPAWHKSIVSFRQLR 374
Query: 435 DEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICN 490
+E+ S E W +L +L G ELT+ TG SGK+ +I +
Sbjct: 375 EEV---LGELSNVEQAAGIRWNRFPDLNRLLKGHRKGELTVFTGPTGSGKTTFISEYALD 431
Query: 491 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS- 549
+ G + S E AR +L + + R+ E+ ++ W
Sbjct: 432 LCTQ-GVNTLWGSFEISNVRLARVMLTQF------------AVGRLE-EQLDKYDEWADR 477
Query: 550 -NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 608
L SI+ V+D + AV + + +VID + +S
Sbjct: 478 FEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAAQDY 537
Query: 609 MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP 668
++ ++FA ++CHV V HPR+ + + I GSA + DN ++I ++R
Sbjct: 538 IVGAFRKFATDNSCHVTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKL 594
Query: 669 EAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
GP R +QV +N+ G +G L +N+
Sbjct: 595 VTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 623
>gi|294083963|ref|YP_003550720.1| DNA primase [Candidatus Puniceispirillum marinum IMCC1322]
gi|292663535|gb|ADE38636.1| DNA primase [Candidatus Puniceispirillum marinum IMCC1322]
Length = 566
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 125/586 (21%), Positives = 228/586 (38%), Gaps = 94/586 (16%)
Query: 144 CPKCNGGDSEELSLSLFLDE--DGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSK 201
CPKC D+ L+++ D W CF + KG VD + + + + S
Sbjct: 17 CPKCGSSDA----LAVYGDSATQEVHHGW-CFSCQTFQKGDN---VDGSYTNTPKRNSSS 68
Query: 202 MKTIREITEDSLELEPLGNELRAYFAERLISAETLRR-NRVMQKRHGHEVVIAFPYWRNG 260
L+ NE+++ R ++ ET R+ N +G V +A NG
Sbjct: 69 ANL----------LDGEYNEIKS----RGLTEETCRKFNYTTAIHNGEPVQVATYLDENG 114
Query: 261 KLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLN--CV 317
+ V K R +KKF D + YG + ++I EGE+D +++ + V
Sbjct: 115 RPVAQKVRTKSKKFTMLGDAKAATLYGSHLYKTGKKLVICEGEIDAMTVSQVQGHKWATV 174
Query: 318 SVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARR 377
S+ G S+V + + N ++ + +IL D D GQ A+E A
Sbjct: 175 SLTQGCSSAV--------------KTMKNNWEFITKFEEVILMFDMDSVGQKAAQEAAAT 220
Query: 378 VGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI 437
+ + P KDANE L+ + + + A Y G+ DY D I
Sbjct: 221 LPVGKAKIAYLP-------CKDANECLLQGKSAEIIQAIYQAREYRPDGIVVATDYRDVI 273
Query: 438 DAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAG 496
+S ++ + LNE++ L E+ +V +GK+ ++ + ++++ G
Sbjct: 274 SEDDQASS-----VTYPYSNLNEIFRGLRLKEILLVAAGSGTGKTTFVKEIAYHLHQQ-G 327
Query: 497 WKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFE----QGK------- 545
+ L +E + L+ H+ K + + +E F+ +G+
Sbjct: 328 ERVGLIMLEESNKRSLLSLVGTHMNKNVL-VDRSEVTDDEIIEAFDDLFGEGRNPVYLYD 386
Query: 546 AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ---TE 602
W S+ LI C+ I ++ A VL G++ + +D + L Q S +E
Sbjct: 387 HWGSSDVDLI-CQR-----ITYM-----AKVL--GIKWVFLDHISMLCTQMGGSSGFGSE 433
Query: 603 TEYVSQMLTMVKRFAQHHACHVWFVAHPRQ-----LHNWVGEPPNLYDISGSAHFINKCD 657
+ +T ++ Q + V+H ++ H G+P L + GS+ D
Sbjct: 434 RLIIDYAMTKLRTMVQELDIGLILVSHVKRPDGNSGHESGGQPVRLNHLRGSSSLGQLSD 493
Query: 658 NGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIG-EAFLSYNRVT 702
I ++ + D I + + ++N+ G G L Y+R T
Sbjct: 494 GVIALNVDSDEPDSDIRHLHI----LKNRFCGATGYSGTLRYDRDT 535
>gi|426252951|ref|XP_004020166.1| PREDICTED: LOW QUALITY PROTEIN: twinkle protein, mitochondrial
[Ovis aries]
Length = 690
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 101/430 (23%), Positives = 171/430 (39%), Gaps = 66/430 (15%)
Query: 284 FYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 342
+GL I + ++I+ E+D L++ ++ L +++P G + + +P
Sbjct: 253 LFGLPLISRRDVEVILTSRELDSLALNQSTGLPTLALPRGT-ACLPPALLP--------- 302
Query: 343 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 402
YL+Q R++L D A+ AR++ +RC VR P + N+
Sbjct: 303 -------YLEQFRRVVLWLGNDLRSWEAAKLFARKLNPKRCSLVR-PGDQQPSPLEALNQ 354
Query: 403 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY 462
L L ++ A + +FR +E+ S E W +L
Sbjct: 355 GL------NLSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGVRWSRFPDLN 405
Query: 463 NVLPG----ELTIVTGVPNSGKSEWID--AL-ICNINEHAGWKFVLCSMENKVR----EH 511
+L G ELT+ TG SGK+ +I AL +C + W S R +
Sbjct: 406 RLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQGVNTLWGSFEISNVRLARVMLTQF 465
Query: 512 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 571
A LE+ + K Y A+R FE L F + SI+ V+D
Sbjct: 466 AVGRLEEQLDK------YDEWADR-----FED----LPLYFMTFHGQQ----SIRTVIDT 506
Query: 572 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPR 631
+ AV + + +VID + +S ++ ++FA +CHV V HPR
Sbjct: 507 MQHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATDSSCHVTLVIHPR 566
Query: 632 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGT 690
+ + + I GSA + DN ++I ++R GP R +QV +N+ G
Sbjct: 567 KEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGD 619
Query: 691 IGEAFLSYNR 700
+G L +N+
Sbjct: 620 VGVFPLEFNK 629
>gi|117929290|ref|YP_873841.1| primary replicative DNA helicase [Acidothermus cellulolyticus 11B]
gi|117649753|gb|ABK53855.1| primary replicative DNA helicase [Acidothermus cellulolyticus 11B]
Length = 452
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 131/316 (41%), Gaps = 31/316 (9%)
Query: 392 NDVDHFKDANEVLMYLGPGALKEVV--ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF 449
+DVD DA + ++ +V ++E Y ++ + DEI+A HR G
Sbjct: 142 SDVDEVVDAAQAAIF-------DVTTRRDSEDYVVLEAL-LQPTLDEIEASGHRGIG-LT 192
Query: 450 GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-IDALICNINEHAGWKFVLCSMENK 507
G+ TG+ L+ L N L PG+L +V P GKS +D C H VL S+E
Sbjct: 193 GVPTGFADLDALTNGLHPGQLIVVAARPAMGKSTLALDVARCAAIRHQ-LTTVLFSLEMS 251
Query: 508 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 567
E +LL + P G ++ +++ + L S +DS P++
Sbjct: 252 KHEITMRLLSAESRVPLQALRTG----QLRDDDWMKLTRRLGELASAPLYIDDS-PNLSM 306
Query: 568 VLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 625
+ AKA L RH +R +++D Y +L + + VSQ+ +K A+ V
Sbjct: 307 MEIRAKARRLRQRHDLRLVIVD-YLQLMTSHTRVENRQQEVSQISRSLKLLAKELGVPVV 365
Query: 626 FVAHP-RQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVC 679
++ R + P L D+ S D I++HR P AG D +
Sbjct: 366 ALSQLNRGPEQRTDKRPQLADLRESGAIEQDADVVILLHREDMYEKESPRAGEAD---LI 422
Query: 680 VRKVRNKVVGTIGEAF 695
V K RN T+ AF
Sbjct: 423 VAKHRNGPTATLTVAF 438
>gi|397571773|gb|EJK47953.1| hypothetical protein THAOC_33293 [Thalassiosira oceanica]
Length = 545
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 121/292 (41%), Gaps = 55/292 (18%)
Query: 294 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ 353
+ +++ EGE D +++ +A VS+P+G +++P + L++
Sbjct: 211 TSVVLTEGEFDAMAVCQATGRPAVSLPNGC------RSLPVQ-----------AVQMLER 253
Query: 354 ASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKND-------------VDHFKDA 400
I+L D D PG+ AE AR++G ERC VR K + KDA
Sbjct: 254 FDTIVLWMDSDGPGREGAEMFARKLGVERCLVVRPSGKRGRREGEEGAGSGPAAEVPKDA 313
Query: 401 NEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI---DAYYHRTSGDEFGISTGWRA 457
NE L LG L E++E A P + F D D++ + + G G+ +
Sbjct: 314 NEAL--LGGWDLDELIEEATNLPHERILRFADVRDQVLHEIVHPDKYRGTPMTSLPGFTS 371
Query: 458 LNELYNVLPGELTIVTG-----------------VPNSGKSEWIDALICNINEHAGWKFV 500
L + + GELT++TG SGK+ ++ ++ E G +
Sbjct: 372 LIKGFRR--GELTVLTGENFGPDGSETCAATRESPTGSGKTTFLGQTSLDLVEQ-GVNVL 428
Query: 501 LCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 552
S E K +KLL+++++ A++G EE + L++ F
Sbjct: 429 WGSFEIKNTRLMKKLLQQYMRDVLPMADHGAEMTERQREEAMTSLSALADRF 480
>gi|317058120|ref|ZP_07922605.1| predicted protein [Fusobacterium sp. 3_1_5R]
gi|313683796|gb|EFS20631.1| predicted protein [Fusobacterium sp. 3_1_5R]
Length = 285
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 113/258 (43%), Gaps = 28/258 (10%)
Query: 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHAR-----KLLEK-- 518
PGE+ I TG P SGKS +++ L+ N+ E F +M+ + R+ K+L +
Sbjct: 7 PGEVIIFTGNPGSGKSTFVNNLMANLVEQGIKVF---TMQGEFRKEVFKTNICKILSRPG 63
Query: 519 ---HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA 575
K P + YG +++ E+ ++ WL I + P+ +++ + A
Sbjct: 64 QIETFKHPLKDKLYG----KISYEQEKKINTWLKGK---ITIHTEQTPTKADLIETMEQA 116
Query: 576 VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN 635
++GV+ VID ++ S + E + ++ F + + + VAHP++
Sbjct: 117 YKKNGVKVFVIDNLMTINID---SADKYEAQKNLFIELQEFVKKYNVCLMIVAHPKKNIV 173
Query: 636 WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID----RVQVCVRKVRNKVVGTI 691
+ + + ISG++ +N + + + R + E + V +++ G I
Sbjct: 174 KALDEVDDFIISGASEIVNLANAVVFLKRLSEDEVKKLQEQGFEASVGAILTKDRKYGDI 233
Query: 692 -GEAFLSYNRVTGEYMDI 708
+ F +Y TG ++DI
Sbjct: 234 RSKGFWNYEIKTGRFLDI 251
>gi|322795386|gb|EFZ18165.1| hypothetical protein SINV_00308 [Solenopsis invicta]
Length = 542
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 85/389 (21%), Positives = 146/389 (37%), Gaps = 56/389 (14%)
Query: 332 VPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR---- 387
+P Q+ Q L N + + ++IL D P A + A+++ +RC+ VR
Sbjct: 173 LPYNLQNLPQQLLPNFENF----KKLILWFGNDEPSWYTARQFAKKLNEKRCYFVRPIDT 228
Query: 388 WPK-KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI--DAYYHRT 444
P+ K D D +LM P K + FD++ D
Sbjct: 229 QPRPKLAADRGYDLKSILMNAQPIWHKSIT----------------IFDDLRQDVLCDLQ 272
Query: 445 SGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 500
+ D W+ L +L G ELTI+TG SGK+ ++ ++ G +
Sbjct: 273 NIDRVQ-GVKWKRYPALNRILKGHRRGELTILTGPTGSGKTTFMSEYSLDL-AMQGVNTL 330
Query: 501 LCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS--NTFSLIRCE 558
S E + AR +L++ AE E ++ ++ N +
Sbjct: 331 WGSFEIRNARLARTMLQQM-------------AEVSLEENLDKFNSYADAFNKLPIYFMT 377
Query: 559 NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN-ELDHQRPVSQTETEYVSQMLTMVKRFA 617
+IK V+D + A H + ++ID + ++ +++ + FA
Sbjct: 378 FHGQQNIKVVMDAVEHATYVHDIAHVIIDNVQFMMGMSEDITSDRFWKQDKIIAEFRNFA 437
Query: 618 QHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 677
H CHV V HPR+ N E I GSA + DN ++I R +Q
Sbjct: 438 TKHNCHVTLVIHPRKERN---EELTTLSIFGSAKASQEADNVLIIQDKRLTSIKGKKYLQ 494
Query: 678 VCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
V +N+ G +G L +++ Y+
Sbjct: 495 VA----KNRYSGDLGIMILEFDKTKLSYV 519
>gi|388841111|gb|AFK79160.1| replicative DNA helicase [uncultured bacterium F25-01]
Length = 449
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 120/280 (42%), Gaps = 28/280 (10%)
Query: 430 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALI 488
R+YFD I+ Y H+ G+ G+ +G+R L+++ L P +L I+ G P GK+ + +++
Sbjct: 168 LREYFDTIE-YLHQHKGEVVGVPSGFRDLDQITGGLHPSDLIIIAGRPGVGKTGFALSIV 226
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL--EKHIKKPFFEANYGGSAERMTVEEFEQGKA 546
N+ L S+E + ++LL E + + Y ++EFE
Sbjct: 227 RNVASRFQAPAALFSLEMSTEQLVQRLLCMEAAVDSQRVRSGY--------IDEFE---- 274
Query: 547 W--LSNTFSL-----IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 599
W +S F + I ++ + S + A+ H ++ +V+D Y +L R +
Sbjct: 275 WRRISEAFGVLSDAPIFIDDSAGISTAELRMKARRLKTEHDLKLIVVD-YLQLMQGRGL- 332
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ + VS++ +K A+ V ++ R + + P L D+ S D
Sbjct: 333 ENRVQEVSEISRALKVLARELDVPVIALSQLSRAVESRQDHRPMLSDLRESGSIEQDADI 392
Query: 659 GIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
+ IHR P+ + + + K RN VG I F
Sbjct: 393 VMFIHREELYKPDTDKKNIADIIIAKHRNGPVGQIPVRFF 432
>gi|148540314|ref|NP_001091933.1| twinkle protein, mitochondrial [Bos taurus]
gi|146327380|gb|AAI40488.1| C26H10ORF2 protein [Bos taurus]
gi|296472706|tpg|DAA14821.1| TPA: twinkle [Bos taurus]
Length = 683
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 100/430 (23%), Positives = 171/430 (39%), Gaps = 66/430 (15%)
Query: 284 FYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 342
+GL I + ++++ E+D L++ ++ L +++P G + + +P
Sbjct: 246 LFGLPLISRRDVEVVLTSRELDSLALNQSTGLPTLALPRGT-ACLPPALLP--------- 295
Query: 343 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 402
YL+Q R++L D A+ AR++ +RC VR P + N+
Sbjct: 296 -------YLEQFRRVVLWLGNDLRSWEAAKLFARKLNPKRCSLVR-PGDKQPSPLEALNQ 347
Query: 403 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY 462
L L ++ A + +FR +E+ S E W +L
Sbjct: 348 GL------NLSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGVRWSRFPDLN 398
Query: 463 NVLPG----ELTIVTGVPNSGKSEWID--AL-ICNINEHAGWKFVLCSMENKVR----EH 511
+L G ELT+ TG SGK+ +I AL +C + W S R +
Sbjct: 399 RLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQGVNTLWGSFEISNVRLARVMLTQF 458
Query: 512 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 571
A LE+ + K Y A+R FE L F + SI+ V+D
Sbjct: 459 AVGRLEEQLDK------YDEWADR-----FED----LPLYFMTFHGQQ----SIRTVIDT 499
Query: 572 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPR 631
+ AV + + +VID + +S ++ ++FA +CHV V HPR
Sbjct: 500 MQHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATDSSCHVTLVIHPR 559
Query: 632 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGT 690
+ + + I GSA + DN ++I ++R GP R +QV +N+ G
Sbjct: 560 KEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGD 612
Query: 691 IGEAFLSYNR 700
+G L +N+
Sbjct: 613 VGVFPLEFNK 622
>gi|385651587|ref|ZP_10046140.1| replicative DNA helicase [Leucobacter chromiiresistens JG 31]
Length = 457
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 126/311 (40%), Gaps = 31/311 (9%)
Query: 406 YLGPGALKEVVENA--ELYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGIST 453
Y G G ++V A E+Y + G DY +EI+ G G+ T
Sbjct: 144 YAGEGEAIDLVNVAQSEIYGVTGESQGEDYVPLHLAVDAALEEINKANGAADG-MLGVPT 202
Query: 454 GWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 512
G+ L+ + N G ++ I+ P GKS + N + HA V S+E E A
Sbjct: 203 GFSELDAMTNGFAGGQMIIIAARPAMGKSTLAMDVARNASVHANAPTVFFSLEMGRAEIA 262
Query: 513 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLA 572
+LL P G R +F++ A + +DS P++ V A
Sbjct: 263 MRLLAAEASIPMQTLRKGALDNR----DFQKLAATQARVAEAPLYIDDS-PNLTLVEIRA 317
Query: 573 KAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH- 629
K L+ HG+R +VID Y +L S++ + VS+ +K ++ V ++
Sbjct: 318 KCRRLKQQHGLRMVVID-YLQLLSSGKKSESRQQEVSEFSRALKLLSKELDVPVIALSQL 376
Query: 630 PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRD-PEAGPIDRVQVCVRKVR 684
R + P + D+ S D I++HR +RD P AG D + + K R
Sbjct: 377 NRASEQRADKMPAISDLRESGSLEQDADMVILLHREAVGDRDSPRAGEADFI---LAKQR 433
Query: 685 NKVVGTIGEAF 695
N GT+ AF
Sbjct: 434 NGPTGTVTVAF 444
>gi|327267466|ref|XP_003218523.1| PREDICTED: twinkle protein, mitochondrial-like [Anolis
carolinensis]
Length = 666
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 110/502 (21%), Positives = 191/502 (38%), Gaps = 69/502 (13%)
Query: 220 NELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW--RNGKLVNCKYRDFNKKFWQE 277
E +A F IS TL+R V R +V FP++ R L K ++
Sbjct: 158 QEAKAKFGISSISNATLKRFGVRYLRTAQALV--FPWFSPRGTSLKGLKLLGVERQGETA 215
Query: 278 KDTEKVF---------YGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSV 327
E +GL I ++++++ E+D L++ +A L +++P G S +
Sbjct: 216 NYVENTLPRPSAYHNLFGLPLIGRRDTEVVLTGRELDTLALHQATGLPILALPRGI-SCL 274
Query: 328 SKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 387
+P YL+Q RI L D A+ AR++ +RC V+
Sbjct: 275 PPGLLP----------------YLEQFKRITLWLGEDLRSWEAAKLFARKLNPKRCSLVQ 318
Query: 388 WPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGD 447
P + + L L +++ +A + +FR +E+ +
Sbjct: 319 -PSDQQLQPLEAFTRGL------NLTKILRSALPAGHKAIISFRQLREEV---LGELANV 368
Query: 448 EFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503
E W EL +L G ELT+ TG SGK+ +I ++ G + S
Sbjct: 369 EQVAGVKWARFPELNKLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCMQ-GVNTLWGS 427
Query: 504 ME-NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS--NTFSLIRCEND 560
E N VR + K G E E+ ++ W L
Sbjct: 428 FEINNVR----------LAKIMLTQFAMGRLE----EQLDKFDEWADRFEDLPLYFMTFH 473
Query: 561 SLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHH 620
+IK V+D K AV + + ++ID + Q ++ ++ ++FA +
Sbjct: 474 GHQNIKTVMDTMKHAVYMYDITHIIIDNLQFMMGQEQLTVDRLAVQDYIVGTFRKFATEN 533
Query: 621 ACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCV 680
+CHV V HPR+ I GSA + DN ++I ++R GP R +
Sbjct: 534 SCHVTLVIHPRKEDE--ERELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRY---L 587
Query: 681 RKVRNKVVGTIGEAFLSYNRVT 702
+ +N+ G +G L +++ +
Sbjct: 588 QISKNRFDGDVGIFPLEFSKTS 609
>gi|386853269|ref|YP_006271282.1| replicative DNA helicase [Actinoplanes sp. SE50/110]
gi|359840773|gb|AEV89214.1| replicative DNA helicase [Actinoplanes sp. SE50/110]
Length = 427
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 108/276 (39%), Gaps = 37/276 (13%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
DEI+A + G G+ TG++ L+ L N L PG+L IV G P GKS N
Sbjct: 155 LDEIEAV-GASGGVMQGVPTGFQDLDRLLNGLHPGQLIIVAGRPGLGKSTASMDFARNAA 213
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 552
G + S+E E +LL + P G+ +
Sbjct: 214 IRHGCASAIFSLEMSKIEMVMRLLSAEARVPL--------------HTLRSGQLSDDDWT 259
Query: 553 SLIRCEN---------DSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQT 601
L RC D P++ + AKA L RH ++ LVID Y +L +++
Sbjct: 260 KLARCMGEISEAPIFVDDTPNMNLMEIRAKARRLKQRHNLKLLVID-YLQLMSSPKKTES 318
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 660
+ VS++ +K A+ C V V+ R + P L D+ S D I
Sbjct: 319 RQQEVSELSRGLKLLAKEVECPVIGVSQLNRGPEQRTDKRPQLSDLRESGSIEQDADVVI 378
Query: 661 VIHRN-----RDPEAGPIDRVQVCVRKVRNKVVGTI 691
++HR+ P AG D + V K RN TI
Sbjct: 379 LLHRDDYYDKESPRAGEADFI---VAKHRNGPTDTI 411
>gi|359797792|ref|ZP_09300372.1| replicative DNA helicase [Achromobacter arsenitoxydans SY8]
gi|359364260|gb|EHK65977.1| replicative DNA helicase [Achromobacter arsenitoxydans SY8]
Length = 462
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 125/289 (43%), Gaps = 43/289 (14%)
Query: 430 FRDYFDEIDAYYHRTSGDEFGISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALI 488
R+ ++++A R G G++TG+ L+E G+L I+ G P+ GK+ + +
Sbjct: 164 LRNVLEQLEARGEREGGVS-GLATGFADLDEKTSGCQDGDLIIIAGRPSMGKTTFAINIA 222
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGG-SAERMTVEEFEQGKAW 547
N+ E G V+ S+E A +L E+ I A YG +R+ + QG W
Sbjct: 223 ENVTEDDGVALVV-SLEMA----AAQLAERSI------ARYGAIDTQRLRTGKLHQGD-W 270
Query: 548 LSNTFSLIRCENDSL-----PSIKWVLDL---AKAAVLRHGVRGLVIDPYNELDHQRPVS 599
T ++ + EN L PS+ V + A+ R G L++ Y +L +
Sbjct: 271 PRLTHAIQQLENQRLIIADDPSLANVARIRLAARKVKQRQGRLDLIVVDYLQL--MQGEG 328
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN----LYDISGSAHFINK 655
T E + + +K A+ C + ++ QL V E PN L D+ S
Sbjct: 329 STRNEDLGGITRAIKLLARELGCPIIVLS---QLSRKVEERPNKRPILSDLRESGAIEQD 385
Query: 656 CDNGIVIHRN-----RDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYN 699
D ++++R+ P G ++ +RK R +G +GE FL++
Sbjct: 386 ADVVMMVYRDDYYHEDSPYKG---LAEILIRKQR---MGPLGEVFLTFQ 428
>gi|384495121|gb|EIE85612.1| hypothetical protein RO3G_10322 [Rhizopus delemar RA 99-880]
Length = 340
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 23/181 (12%)
Query: 533 AERMTVEEFEQGKAWLSNTFSLIRCENDSLP----------SIKWVLDLAKAAVLRHGVR 582
A++M + E+ A F + E + LP IK VLD+ K AV +GV+
Sbjct: 144 AKKMLSQFAEKDLAQFPEEFDRVADEFEKLPMYFLKFHSSTPIKKVLDVCKEAVDVYGVQ 203
Query: 583 GLVIDPYN-ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPP 641
+VID L Q + E + ++ FA H+ V HPR+ GE
Sbjct: 204 HIVIDNLQFMLSQQARAGLDKWELQEDAIAKIRSFATSEDVHITLVVHPRK---ETGEEL 260
Query: 642 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRV 701
++ I GSA + DN I++ R + A I +N+ GT+G +N+
Sbjct: 261 DINSIFGSAKVTQEADNVIILQRRFNTRAIDIK---------KNRYDGTLGVIKYKFNKN 311
Query: 702 T 702
T
Sbjct: 312 T 312
>gi|440912429|gb|ELR61999.1| Twinkle protein, mitochondrial [Bos grunniens mutus]
Length = 683
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 100/430 (23%), Positives = 171/430 (39%), Gaps = 66/430 (15%)
Query: 284 FYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 342
+GL I + ++++ E+D L++ ++ L +++P G + + +P
Sbjct: 246 LFGLPLISRRDVEVVLTSRELDSLALNQSTGLPTLALPRGT-ACLPPALLP--------- 295
Query: 343 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 402
YL+Q R++L D A+ AR++ +RC VR P + N+
Sbjct: 296 -------YLEQFRRVVLWLGNDLRSWEAAKLFARKLNPKRCSLVR-PGDKQPSPLEALNQ 347
Query: 403 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY 462
L L ++ A + +FR +E+ S E W +L
Sbjct: 348 GL------NLSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGVRWSRFPDLN 398
Query: 463 NVLPG----ELTIVTGVPNSGKSEWID--AL-ICNINEHAGWKFVLCSMENKVR----EH 511
+L G ELT+ TG SGK+ +I AL +C + W S R +
Sbjct: 399 RLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQGVNTLWGSFEISNVRLARVMLTQF 458
Query: 512 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 571
A LE+ + K Y A+R FE L F + SI+ V+D
Sbjct: 459 AVGRLEEQLDK------YDEWADR-----FED----LPLYFMTFHGQQ----SIRTVIDT 499
Query: 572 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPR 631
+ AV + + +VID + +S ++ ++FA +CHV V HPR
Sbjct: 500 MQHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATDSSCHVTLVIHPR 559
Query: 632 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGT 690
+ + + I GSA + DN ++I ++R GP R +QV +N+ G
Sbjct: 560 KEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGD 612
Query: 691 IGEAFLSYNR 700
+G L +N+
Sbjct: 613 VGVFPLEFNK 622
>gi|289765792|ref|ZP_06525170.1| predicted protein [Fusobacterium sp. D11]
gi|289717347|gb|EFD81359.1| predicted protein [Fusobacterium sp. D11]
Length = 652
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 33/169 (19%)
Query: 248 HEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDT-EKVFYGLDDIEGESDIIIVEGEMDKL 306
HE ++ P +V KYR +KK W EK + +I ++IVEGE+D L
Sbjct: 4 HESMM-IPVTNGETVVGVKYRSLDKKLWSEKGSCLDYLLNWQNITDFDYLVIVEGEIDLL 62
Query: 307 SMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 366
S EAG N VS+P GA T + + K +L + +II+ATD D
Sbjct: 63 SALEAGVENTVSLPSGA---------------TNIKCIKTQKNWLSKFQKIIIATDDDEA 107
Query: 367 GQALAEELARRVGRER------CWRVRWPKKNDVDHFKDANEVLMYLGP 409
G E +R+ E ++ + KK KD NEVL+ G
Sbjct: 108 GI----EARKRIVYELRDLLIPLYKTYFYKK------KDINEVLVKSGK 146
>gi|339326303|ref|YP_004685996.1| replicative DNA helicase DnaB [Cupriavidus necator N-1]
gi|338166460|gb|AEI77515.1| replicative DNA helicase DnaB [Cupriavidus necator N-1]
Length = 463
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 117/282 (41%), Gaps = 38/282 (13%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR ++ D G+ TG+ L+++ + + PG+L IV G P+ GK+ A NI
Sbjct: 180 ERIDELYHRDSTTDVTGVPTGFIDLDKMTSGMQPGDLVIVAGRPSMGKT----AFSLNIG 235
Query: 493 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH G + SME + A ++L GS R+ G+
Sbjct: 236 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 281
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T ++ R + D P++ + ++ + G GL+I Y +L
Sbjct: 282 EDWPRLTHAIQRMNDTQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 341
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 656
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 GGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 401
Query: 657 DNGIVIHRNRDPEAGPIDR--VQVCVRKVRNKVVGTIGEAFL 696
D + I+R+ A D+ ++ + K RN +GT+ FL
Sbjct: 402 DVILFIYRDEVYNADSQDKGTAEIIIGKQRNGPIGTVRLTFL 443
>gi|350592990|ref|XP_003483588.1| PREDICTED: twinkle protein, mitochondrial-like [Sus scrofa]
Length = 571
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 97/418 (23%), Positives = 166/418 (39%), Gaps = 65/418 (15%)
Query: 295 DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA 354
++++ E+D L++ ++ L +++P G + + +P YL+Q
Sbjct: 146 ELVLTSRELDSLALNQSTGLPTLALPRGT-ACLPPALLP----------------YLEQF 188
Query: 355 SRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKE 414
R++L D A+ AR++ +RC VR P + N+ L L
Sbjct: 189 RRVVLWLGDDLRSWEAAKLFARKLNPKRCSLVR-PGDQQPSPLEALNQGL------NLSR 241
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELT 470
++ A + +FR +E+ S E W +L +L G ELT
Sbjct: 242 ILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGVRWSRFPDLNRLLKGHRKGELT 298
Query: 471 IVTGVPNSGKSEWID--AL-ICNINEHAGWKFVLCSMENKVR----EHARKLLEKHIKKP 523
+ TG SGK+ +I AL +C + W S R + A LE+ + K
Sbjct: 299 VFTGPTGSGKTTFISEYALDLCTQGVNTLWGSFEISNVRLARVMLTQFAVGRLEEQLDK- 357
Query: 524 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRG 583
Y A+R FE L F + SI+ V+D + AV + +
Sbjct: 358 -----YDEWADR-----FED----LPLYFMTFHGQQ----SIRTVIDTMQHAVYVYDICH 399
Query: 584 LVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNL 643
+VID + +S ++ ++FA +CHV V HPR+ + +
Sbjct: 400 VVIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATDSSCHVTLVIHPRKEDD--DKELQT 457
Query: 644 YDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
I GSA + DN ++I ++R GP R +QV +N+ G +G L +N+
Sbjct: 458 ASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 510
>gi|386850774|ref|YP_006268787.1| replicative DNA helicase [Actinoplanes sp. SE50/110]
gi|359838278|gb|AEV86719.1| replicative DNA helicase [Actinoplanes sp. SE50/110]
Length = 351
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 117/279 (41%), Gaps = 35/279 (12%)
Query: 430 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALI 488
F+ D+I++ R G G+ TG++ L+ L N L PG++ IV G P GKS +
Sbjct: 75 FQPVMDDIESAGSR-DGSMLGVPTGFKDLDRLLNGLQPGQVIIVAGRPGLGKS----TVG 129
Query: 489 CNINEHAGWKFVLCS----MENKVREHARKLLEKHIKKPFFEANYGGSAE----RMT--V 538
+I HA + + S +E E +LL + P G ++ RM +
Sbjct: 130 LDIARHAAIRAGMPSGFFTLEMSKVEMVTRLLSAEARVPLHVLRSGQLSDDDWARMARCM 189
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
+ ++ +T S+ E + A++ +H +R LVID Y +L
Sbjct: 190 GQIADAPIFVDDTPSMGMSE---------IRSKARSLKKKHNLRLLVID-YLQLMSSPKK 239
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH----PRQLHNWVGEPPNLYDISGSAHFIN 654
+++ + VS++ +K ++ C + ++ P Q + + P L D+ S
Sbjct: 240 TESRQQEVSELSRGLKLLSKEIGCPIIVISQLNRGPEQRQD---KRPQLSDLRESGSIEQ 296
Query: 655 KCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTI 691
D I++HR+ D E+ V K RN TI
Sbjct: 297 DADVVILLHRDDYYDKESARAGEADFIVAKHRNGPTDTI 335
>gi|332668584|ref|YP_004451591.1| replicative DNA helicase [Cellulomonas fimi ATCC 484]
gi|332337621|gb|AEE44204.1| replicative DNA helicase [Cellulomonas fimi ATCC 484]
Length = 459
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 126/307 (41%), Gaps = 31/307 (10%)
Query: 410 GALKEVVENA--ELYPIMGLFNFRDYF----------DEIDAYYHRTSGDEFGISTGWRA 457
G + E+V NA E+Y + DY DEI+A HR G G+ TG+
Sbjct: 151 GDVDEIVNNAQAEVYAVTERRASEDYLPLGEIIGGTVDEIEAAGHRGEG-MIGVPTGFSD 209
Query: 458 LNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLL 516
L+ L N L PG++ +V P GKS ++ + + G V+ S+E E +LL
Sbjct: 210 LDRLTNGLHPGQMIVVAARPAIGKSTLGIDIVRSASIKHGMTSVVFSLEMSRNEITMRLL 269
Query: 517 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAV 576
+ + G +M +++ + A + +DS P++ + AK+
Sbjct: 270 SAEARVHLQKMRTG----QMGEDDWAKVAATMGKISEAPLFIDDS-PNMSLMEIRAKSRR 324
Query: 577 L--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQL 633
L RH ++ ++ID + + V + E VS+ +K A+ V ++ R
Sbjct: 325 LKQRHDLKLVIIDYLQLMTSGKRVESRQQE-VSEFSRALKLLAKELEVPVIAISQLNRGP 383
Query: 634 HNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVCVRKVRNKVV 688
+ P + D+ S D I++HR P AG D + V K RN
Sbjct: 384 EQRTDKKPQMSDLRESGSIEQDADMVILLHREDAYEKESPRAGEAD---LIVAKHRNGPT 440
Query: 689 GTIGEAF 695
TI AF
Sbjct: 441 DTITVAF 447
>gi|113868251|ref|YP_726740.1| replicative DNA helicase [Ralstonia eutropha H16]
gi|113527027|emb|CAJ93372.1| Replicative DNA helicase [Ralstonia eutropha H16]
Length = 463
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 117/282 (41%), Gaps = 38/282 (13%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR ++ D G+ TG+ L+++ + + PG+L IV G P+ GK+ A NI
Sbjct: 180 ERIDELYHRDSTTDVTGVPTGFIDLDKMTSGMQPGDLIIVAGRPSMGKT----AFSLNIG 235
Query: 493 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH G + SME + A ++L GS R+ G+
Sbjct: 236 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 281
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T ++ R + D P++ + ++ + G GL+I Y +L
Sbjct: 282 EDWPRLTHAIQRMNDTQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 341
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 656
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 GGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 401
Query: 657 DNGIVIHRNRDPEAGPIDR--VQVCVRKVRNKVVGTIGEAFL 696
D + I+R+ A D+ ++ + K RN +GT+ FL
Sbjct: 402 DVILFIYRDEVYNADSQDKGTAEIIIGKQRNGPIGTVRLTFL 443
>gi|395502295|ref|XP_003755517.1| PREDICTED: twinkle protein, mitochondrial [Sarcophilus harrisii]
Length = 676
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 98/426 (23%), Positives = 174/426 (40%), Gaps = 58/426 (13%)
Query: 284 FYGLDDIEGESDI--IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKY 341
+GL I G+ D+ ++ E+D L++ +A L +++P G + + +P
Sbjct: 250 LFGLPLI-GQRDVEMVLTSRELDSLALHQATGLPTLALPRGL-ACLPPTLLP-------- 299
Query: 342 QYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDAN 401
YL+Q RI+L D A+ AR++ +RC VR P + +
Sbjct: 300 --------YLEQFRRIVLWLGDDLRAWEAAKLFARKLNPKRCSLVR-PGEQYPRPLEALT 350
Query: 402 EVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL 461
+ L L++++ +A + +FR +E+ S E W +L
Sbjct: 351 KGL------NLQKILRSALPAGHKSIVSFRQLREEV---LGELSNVEQVAGVRWGRFPDL 401
Query: 462 YNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 517
+L G ELT+ TG SGK+ +I ++ G + S E AR +L
Sbjct: 402 NRLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEISNVRLARIMLT 460
Query: 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLS--NTFSLIRCENDSLPSIKWVLDLAKAA 575
+ G ER+ EE+++ W +L SI+ V+D + A
Sbjct: 461 QFA--------MGRLEERL--EEYDE---WADRFEDLALYFMTFHGQQSIRTVMDTMQHA 507
Query: 576 VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN 635
V + + ++ID + Q +S ++ ++FA + CHV V HPR+
Sbjct: 508 VYVYDICHVIIDNLQFMMGQEQLSSDRIAAQDYIVGAFRKFATDNNCHVTLVIHPRKEDG 567
Query: 636 WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEA 694
+ I GSA + DN ++I +++ GP R +QV +N+ G +G
Sbjct: 568 --DKELQTASIFGSAKASQEADN-VLILQDKKLVTGPGKRYLQVS----KNRFDGDVGIF 620
Query: 695 FLSYNR 700
L +N+
Sbjct: 621 PLEFNK 626
>gi|346465805|gb|AEO32747.1| hypothetical protein [Amblyomma maculatum]
Length = 540
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 135/347 (38%), Gaps = 62/347 (17%)
Query: 374 LARRVGRERCWRVRWPKKN------DVDHFKDANEVLMYLGPGALKEVVENAELYPIMGL 427
AR++G +RC+ +R PK+ +VL P + + + L +
Sbjct: 202 FARKLGEKRCYYIR-PKEGYPLAALQAKPRSQLPDVLKRCQPVSHRAITTFHSLRAAVA- 259
Query: 428 FNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL----PGELTIVTGVPNSGKSEW 483
D +D + + T W+ L +L GELT+ TG SGK+ +
Sbjct: 260 ----DLLQNMDTF----------VGTRWQRFPGLVRLLKGFRTGELTVFTGPTGSGKTTF 305
Query: 484 -----IDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTV 538
+D + +N G S E + E K++ K E N +
Sbjct: 306 MCEYSLDLCMQGVNTLWG------SFEIQ-NEKLAKIMLTQFSKISLENN---------M 349
Query: 539 EEFEQGKAWLSNTFSLIRCENDSL---PSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQ 595
EEF+ +W ++ F L+ + ++K V+D AV H ++ +V+D +
Sbjct: 350 EEFD---SW-ADKFELLPLYFMTFHGEETMKNVMDAMSHAVYVHDIQHVVVDNVQFMMGV 405
Query: 596 RPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
S + Q ++ +RFA H CHV V HPR+ + E + I G A
Sbjct: 406 GMDSSNVDRFWRQDLLVAAFRRFATQHNCHVTLVMHPRKERD--AEELSTSSIFGGAKAS 463
Query: 654 NKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNR 700
+ DN +++ R +QV +N+ G IG L +N+
Sbjct: 464 QEADNVLILQDRRLSSQQGCKHLQV----TKNRFDGDIGSVPLEFNK 506
>gi|300311394|ref|YP_003775486.1| replicative DNA helicase [Herbaspirillum seropedicae SmR1]
gi|300074179|gb|ADJ63578.1| replicative DNA helicase protein [Herbaspirillum seropedicae SmR1]
Length = 478
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 122/284 (42%), Gaps = 40/284 (14%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID Y+R +S D G+ TG+ L+++ + L PG+L IV G P+ GK+ A NI
Sbjct: 193 ERIDELYNRDSSSDITGVPTGFMDLDKMTSGLQPGDLIIVAGRPSMGKT----AFSINIG 248
Query: 493 EH----AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH +G + SME + A ++L GS R+ G+
Sbjct: 249 EHVAIESGLPVAVFSMEMGGAQLAMRML--------------GSVGRLDQHRLRTGRLLD 294
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 295 EDWPRLTHAIQKMNDAQFYIDETPALSPIELRARSRRLARQCGKLGLIIIDYLQLMSGNG 354
Query: 598 VSQTE--TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFIN 654
S +E +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 355 GSSSENRASEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQ 414
Query: 655 KCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
D + I+R+ +P++ ++ + K RN +G+I +FL
Sbjct: 415 DADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLSFL 458
>gi|409405889|ref|ZP_11254351.1| replicative DNA helicase [Herbaspirillum sp. GW103]
gi|386434438|gb|EIJ47263.1| replicative DNA helicase [Herbaspirillum sp. GW103]
Length = 481
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 122/284 (42%), Gaps = 40/284 (14%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID Y+R +S D G+ TG+ L+++ + L PG+L IV G P+ GK+ A NI
Sbjct: 196 ERIDELYNRDSSSDITGVPTGFMDLDKMTSGLQPGDLIIVAGRPSMGKT----AFSINIG 251
Query: 493 EH----AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH +G + SME + A ++L GS R+ G+
Sbjct: 252 EHVAIESGLPVAVFSMEMGGAQLAMRML--------------GSVGRLDQHRLRTGRLLD 297
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 298 EDWPRLTHAIQKMNDAQFYIDETPALSPIELRARSRRLARQCGKLGLIIIDYLQLMSGNG 357
Query: 598 VSQTE--TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFIN 654
S +E +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 358 GSSSENRASEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQ 417
Query: 655 KCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
D + I+R+ +P++ ++ + K RN +G+I +FL
Sbjct: 418 DADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLSFL 461
>gi|291404668|ref|XP_002718708.1| PREDICTED: twinkle-like [Oryctolagus cuniculus]
Length = 684
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 101/430 (23%), Positives = 170/430 (39%), Gaps = 66/430 (15%)
Query: 284 FYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 342
+GL I + ++++ E+D L++ +A L +++P G + + +P
Sbjct: 247 LFGLPLITRRDVEVVLTSRELDSLALNQATGLPTLTLPRGT-ACLPPALLP--------- 296
Query: 343 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 402
YL+Q R++ D A+ AR++ +RC VR P N+
Sbjct: 297 -------YLEQFRRVVFWLGDDLRSWEAAKLFARKLNPKRCSLVR-PGDQQPRPLDALNQ 348
Query: 403 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY 462
L L ++ A + +FR +E+ S E W +L
Sbjct: 349 GL------NLSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGVRWSRFPDLN 399
Query: 463 NVLPG----ELTIVTGVPNSGKSEWID--AL-ICNINEHAGWKFVLCSMENKVR----EH 511
+L G ELT+ TG SGK+ +I AL +C + W S R +
Sbjct: 400 RLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQGVNTLWGSFEISNVRLARVMLTQF 459
Query: 512 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 571
A LE+ + K Y A+R FE L F + SI+ V+D
Sbjct: 460 AVGRLEEQLDK------YDEWADR-----FED----LPLYFMTFHGQQ----SIRTVIDT 500
Query: 572 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPR 631
+ AV + V +VID + +S ++ ++FA ++CHV V HPR
Sbjct: 501 MQHAVYVYDVCHVVIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATDNSCHVTLVIHPR 560
Query: 632 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGT 690
+ + + I GSA + DN ++I ++R GP R +QV +N+ G
Sbjct: 561 KEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGD 613
Query: 691 IGEAFLSYNR 700
+G L +N+
Sbjct: 614 VGVFPLEFNK 623
>gi|171463207|ref|YP_001797320.1| replicative DNA helicase [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171192745|gb|ACB43706.1| replicative DNA helicase [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 479
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 114/274 (41%), Gaps = 35/274 (12%)
Query: 437 IDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEH 494
ID Y+R G + GI+TG+ L++ + L G+L IV G P+ GK+ + + N+
Sbjct: 193 IDELYNRQGGSDITGIATGFLDLDKQTSGLQKGDLVIVAGRPSMGKTAFALNIAENVALA 252
Query: 495 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK--------- 545
G V+ SME + A +LL GS R+ GK
Sbjct: 253 EGLPVVVFSMEMSGEQLAARLL--------------GSVGRVDQGRMRTGKLQDDEWPRV 298
Query: 546 ----AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
A LSNT LI E SL S++ + A G GLV+ Y +L
Sbjct: 299 TDAIARLSNTQILID-ETGSLSSLELRARARRIARNFGGTLGLVVIDYLQLMSGSGSENR 357
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 660
TE +S++ +K A+ C V ++ R L + P + D+ S D +
Sbjct: 358 ATE-ISEISRSLKSLAKELQCPVVALSQLNRGLEQRPNKRPIMSDLRESGAIEQDADLIM 416
Query: 661 VIHRNR--DPEAGPIDRV-QVCVRKVRNKVVGTI 691
I+R+ P+ V ++ + K RN +GT+
Sbjct: 417 FIYRDEVYHPDTTTDKGVAEIIIGKQRNGPIGTV 450
>gi|219681354|ref|YP_002456118.1| putative DNA primase/helicase [Erwinia phage phiEa21-4]
gi|327198483|ref|YP_004327071.1| replicative DNA helicase, DnaB-like [Erwinia phage phiEa104]
gi|199580621|gb|ACH89008.1| putative DNA primase/helicase [Erwinia phage phiEa21-4]
gi|311875179|emb|CBX44439.1| replicative DNA helicase, DnaB-like [Erwinia phage phiEa104]
Length = 637
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 133/624 (21%), Positives = 232/624 (37%), Gaps = 86/624 (13%)
Query: 121 KIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWK 180
+ K K+ G IG A CPKC D+ S++ +DG S CF + G+
Sbjct: 5 RFKEKEKGTFIGHTA--------CPKCGSSDAG----SVYRHDDG-SHSMTCFACEKGF- 50
Query: 181 GSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAY-FAERLISAETLRRN 239
D ++Q S + + K++ + E ++ + +L A +R++ L
Sbjct: 51 ----PEWDVEKNQMSERTYDKVENTKRTFE-GYDMAAVKEDLVAMDLPDRVLPEALLESF 105
Query: 240 RVMQKRHGHEVVIAFPY-----------WRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLD 288
V G+ + A Y + G V ++ D KK + G+
Sbjct: 106 GVKVDTDGNGEICAHFYPTYKLDNAGVPYHAGYRVRHRFPDDYKKPELRGKLKDFSGGVG 165
Query: 289 DIEGE-------------SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSE 335
DI GE + I EGE++ ++ A L + V + ++PS
Sbjct: 166 DISGELQLFGSQRHPKGGKRLFIWEGEIESMT---ADLLTSMIVEKNRRKHYAHTSLPS- 221
Query: 336 EQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK--KND 393
+ + + Y+ I + D D G E AR + E+ ++P+ K+
Sbjct: 222 --GANIKGIKDNYQYITSFEEIYICADNDEAGAKFMREAARILPIEKVRIFQYPENVKDL 279
Query: 394 VDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIST 453
D +K + + + K + NAE Y G+ NF D FD A +R
Sbjct: 280 SDWWKGSQKKRKAMLE-EFKHRLYNAERYCPAGIKNFADGFD---AMKNRGKVPLIPFPE 335
Query: 454 GWRALNELY--NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511
+ LN L GE+T + + GKS + +I K + E+ E
Sbjct: 336 SFGDLNALTFGGYGKGEITTIAAPSSVGKSAFTREMIYTAFTQTDEKIGVIPCEDTYEEL 395
Query: 512 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 571
L H+ K E Y + +E ++ LS + ++ +L+
Sbjct: 396 MEMLCSVHLSKQISEIPY----DERNWDEIKEAHKQLSEGRRINIVDHQGAIDQDNLLEF 451
Query: 572 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTET---EYVSQMLTMVKRFAQHH--ACHVWF 626
V G +++DP +S+ ET E +S++L KR H CHV
Sbjct: 452 IDYLVGAMGCGVIILDPVT-----LALSKAETDEEEVLSEILRRCKRLGYAHVNVCHVRK 506
Query: 627 VAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR-- 684
+ ++ ++ G+ DI GS + N +++ RN+ DRV+ + K++
Sbjct: 507 NSGGQKANSEGGDVAE-EDIKGSGAYFQISMNNLILTRNKVDS----DRVRKNITKIKLT 561
Query: 685 -----NKVVGTIGEAFLSYNRVTG 703
K G G A+ Y+ TG
Sbjct: 562 KCRRHGKSTGIAGYAY--YDGETG 583
>gi|331700353|ref|YP_004336592.1| replicative DNA helicase [Pseudonocardia dioxanivorans CB1190]
gi|326955042|gb|AEA28739.1| replicative DNA helicase [Pseudonocardia dioxanivorans CB1190]
Length = 469
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 137/326 (42%), Gaps = 36/326 (11%)
Query: 392 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGI 451
+DVD D + +Y + E + + P+ L DEIDA R G G+
Sbjct: 160 SDVDEVVDRAQAAIY----EVTERTTSEDYTPLEELLQ--PTMDEIDAIASR-GGVALGV 212
Query: 452 STGWRALNELYNVL-PGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENKV 508
TG+ L+ + N L PG++ +V P GKS +D A C++ G + S+E
Sbjct: 213 PTGFADLDAVTNGLHPGQMVVVAARPGLGKSTLGLDFARSCSVRH--GMTSAVFSLEMSK 270
Query: 509 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWV 568
E +LL + + G RM+ E++ + +S +DS P++ +
Sbjct: 271 SEIVMRLLSAEARIRLADMRAG----RMSDEDWTRMARRMSEISEAPLFIDDS-PNLTLM 325
Query: 569 LDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 626
AKA L R+ ++ +++D + R V + E VS+ +K A+ V
Sbjct: 326 EIRAKARRLKQRNDLKLIILDYLQLMTSGRKVESRQQE-VSEFSRQIKLLAKELEVPVVA 384
Query: 627 VAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQ 677
++ P Q ++ + P L D+ S D I++HR DP AG D
Sbjct: 385 MSQLNRGPEQRND---KRPMLSDLRESGSIEQDADMVILLHRPDAFERDDPRAGEAD--- 438
Query: 678 VCVRKVRNKVVGTIGEAF-LSYNRVT 702
+ + K RN TI A L Y+R T
Sbjct: 439 LILAKHRNGPTSTITVAHQLHYSRFT 464
>gi|301756128|ref|XP_002913911.1| PREDICTED: twinkle protein, mitochondrial-like [Ailuropoda
melanoleuca]
gi|281352044|gb|EFB27628.1| hypothetical protein PANDA_001746 [Ailuropoda melanoleuca]
Length = 684
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 99/430 (23%), Positives = 169/430 (39%), Gaps = 66/430 (15%)
Query: 284 FYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 342
+GL I + ++++ E+D L++ ++ L +++P G + + +P
Sbjct: 247 LFGLPLISRRDVEVVLTSRELDSLALNQSTGLPTLALPRGT-ACLPPALLP--------- 296
Query: 343 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 402
YL+Q RI+L D A+ AR++ +RC VR P + N
Sbjct: 297 -------YLEQFRRIVLWLGDDLRSWEAAKLFARKLNPKRCSLVR-PGDQQPRPLEALNR 348
Query: 403 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY 462
L L ++ A + +FR +E+ S E W +L
Sbjct: 349 GL------NLSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGIRWNRFPDLN 399
Query: 463 NVLPG----ELTIVTGVPNSGKSEWIDAL---ICNINEHAGWKFVLCSMENKVR----EH 511
+L G ELT+ TG SGK+ +I +C + W S R +
Sbjct: 400 RLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQGVNTLWGSFEISNVRLARVMLTQF 459
Query: 512 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 571
A LE+ + K Y A+R FE L F + SI+ V+D
Sbjct: 460 AVGRLEEQLDK------YDEWADR-----FED----LPLYFMTFHGQQ----SIRTVIDT 500
Query: 572 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPR 631
+ AV + + +VID + +S ++ ++FA ++CHV V HPR
Sbjct: 501 MQHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATDNSCHVTLVIHPR 560
Query: 632 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGT 690
+ + + I GSA + DN ++I ++R GP R +QV +N+ G
Sbjct: 561 KEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGE 613
Query: 691 IGEAFLSYNR 700
+G L +N+
Sbjct: 614 VGVFPLEFNK 623
>gi|445498524|ref|ZP_21465379.1| replicative DNA helicase DnaB [Janthinobacterium sp. HH01]
gi|444788519|gb|ELX10067.1| replicative DNA helicase DnaB [Janthinobacterium sp. HH01]
Length = 461
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 112/274 (40%), Gaps = 30/274 (10%)
Query: 434 FDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 491
+ ID Y R S E G+ TGW L+ + + L PG++ +V G P+ GK+ + + N+
Sbjct: 178 VERIDELYSRESQSEITGVPTGWIDLDRMTSGLQPGDMVVVAGRPSMGKTAFSMNIAENV 237
Query: 492 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----W 547
G + SME + A ++L GS ++ GK W
Sbjct: 238 AVEEGLPVAVFSMEMGGVQLAMRML--------------GSVGQLDQHRLRTGKLNDEDW 283
Query: 548 LSNTFSLIRCEN-----DSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQ 600
T ++ + + D P++ + A+A L G GL++ Y +L
Sbjct: 284 PRLTHAIQKMNDAQVYIDETPALNPIEMRARARRLSRQCGKLGLIVVDYLQLMTGSTQGD 343
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNG 659
+S++ +K A+ C V ++ R L + P + D+ S D
Sbjct: 344 NRASEISEISRSLKGLAKELQCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVI 403
Query: 660 IVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTI 691
I ++R+ +P++ ++ + K RN +G++
Sbjct: 404 IFLYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSV 437
>gi|430809616|ref|ZP_19436731.1| replicative DNA helicase [Cupriavidus sp. HMR-1]
gi|429497977|gb|EKZ96494.1| replicative DNA helicase [Cupriavidus sp. HMR-1]
Length = 463
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 116/282 (41%), Gaps = 38/282 (13%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR ++ D G+ TG+ L+ + + + G+L IV G P+ GK+ A NI
Sbjct: 180 ERIDELYHRDSTSDVTGVPTGFIDLDRMTSGMQAGDLIIVAGRPSMGKT----AFSLNIG 235
Query: 493 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH G + SME + A ++L GS R+ G+
Sbjct: 236 EHVAVEQGLPVAVFSMEMAGVQLAMRML--------------GSVGRLDQHRLRTGRLLD 281
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T S+ R + D P++ + ++ + G GL+I Y +L
Sbjct: 282 EDWPRLTHSIQRMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 341
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 656
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 SGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 401
Query: 657 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
D + I+R+ +P++ ++ + K RN +GT+ FL
Sbjct: 402 DVILFIYRDEVYNPDSQDKGTAEIIIGKQRNGPIGTVRLTFL 443
>gi|195997685|ref|XP_002108711.1| hypothetical protein TRIADDRAFT_18685 [Trichoplax adhaerens]
gi|190589487|gb|EDV29509.1| hypothetical protein TRIADDRAFT_18685, partial [Trichoplax
adhaerens]
Length = 438
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 149/382 (39%), Gaps = 55/382 (14%)
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDG---APSSVSKKNVPSEEQDTKYQYLWNCKMYLK 352
+++ E D +++ + + VS+P+G P + VP +
Sbjct: 1 VVLTANEFDAMAINQGTGVPAVSLPNGNVLLPVDL----VP----------------LFE 40
Query: 353 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGA- 411
Q RI + + + + A ++ RERC+ + K + F A E L G
Sbjct: 41 QFKRITIWLGNSVKDKRMELQFANKLQRERCYFLPSTLKGE---FPTALEAL---NRGVD 94
Query: 412 LKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG---- 467
LK+V+ +A + + F D ++ Y+ + E I W+ EL +L G
Sbjct: 95 LKKVLNSAHVVAHNRIVTFTDLRQDV---YNEFANREQIIGVPWQRHPELTKILKGHRRG 151
Query: 468 ELTIVTGVPNSGKSEWIDAL---ICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 524
E+TI TG SGK+ +I + +CN G + S E + + ++ + F
Sbjct: 152 EMTIFTGPTGSGKTTFISEISIDLCN----QGVNTLFGSFEIRNVRIMKTMMRQFSGINF 207
Query: 525 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGL 584
E N G E+ + FE+ + + + IK V+ + A + +
Sbjct: 208 EEKNKLGKFEKYATQ-FEKLPLYFMHFYGS--------QDIKRVIQTMEHAAYIFDIEHI 258
Query: 585 VIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLY 644
++D L + + L++ +RFA HV V HPR+ ++ +
Sbjct: 259 IVDNLQFLLNVDTRDDFAFRQQNLALSLFRRFASEKNVHVTLVVHPRKEND--DTDLQMA 316
Query: 645 DISGSAHFINKCDNGIVIHRNR 666
I GSA + DN +++ R
Sbjct: 317 SIGGSAKASQEADNVMILQNIR 338
>gi|452124394|ref|ZP_21936978.1| replicative DNA helicase [Bordetella holmesii F627]
gi|452127788|ref|ZP_21940368.1| replicative DNA helicase [Bordetella holmesii H558]
gi|451923624|gb|EMD73765.1| replicative DNA helicase [Bordetella holmesii F627]
gi|451926657|gb|EMD76790.1| replicative DNA helicase [Bordetella holmesii H558]
Length = 457
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 115/277 (41%), Gaps = 28/277 (10%)
Query: 434 FDEIDAYYHRTS-GDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 491
+ ID YHR S D G+ TG+ L+++ + L PG+L IV G P+ GK+ + NI
Sbjct: 178 VERIDELYHRDSESDVTGVPTGFTDLDKMTSGLQPGDLVIVAGRPSMGKTSF----SMNI 233
Query: 492 NEHA----GWKFVLCSMENKVREHARK------LLEKHIKKPFFEANYGGSAERMTVEEF 541
EH G + SME + A + +L++H + V+
Sbjct: 234 GEHVAIEQGLPVAVFSMEMGAVQLAMRMLGSVGMLDQHRMRTGKLVAEDWPRVTHAVQLM 293
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
++ + ++ T +L E V A+ + G GL+I Y +L +
Sbjct: 294 QEAQVYIDETPALSAME---------VRARARRLARQCGQLGLIIIDYIQLMSASSAGEN 344
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 660
VS++ +K A+ C + ++ R L + P + D+ S D +
Sbjct: 345 RATEVSEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVIL 404
Query: 661 VIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
I+R+ +P++ ++ + K RN +GT+ F
Sbjct: 405 FIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTF 441
>gi|451936466|ref|YP_007460320.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
gi|451777389|gb|AGF48364.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
Length = 453
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 122/298 (40%), Gaps = 48/298 (16%)
Query: 420 ELYPIMGLFNFRDYFDEIDAYYHRTSG-DEFGISTGWRALNELYNVL-PGELTIVTGVPN 477
E+ P++ + ID YHR D G+ TG+ L+++ + L PGEL IV G P+
Sbjct: 168 EIQPLLA-----QVVERIDELYHREGDTDITGVPTGFIDLDKMTSGLQPGELIIVAGRPS 222
Query: 478 SGKSEWIDALICNINEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
GK+ A NI E+ G + SME + A ++L GS
Sbjct: 223 MGKT----AFSMNIGEYVAIEHGLPVAVFSMEMGASQLAMRML--------------GSI 264
Query: 534 ERMTVEEFEQGKA----WLSNTFSL-----IRCENDSLPSIKWVLDLAKAAVLRH--GVR 582
++ + GK W T ++ I+ D P++ + AK L G
Sbjct: 265 SKVDQHKMRTGKLSEEDWPKITDAIQAMQDIQLYIDETPALNVIEVKAKTRRLSRQCGQL 324
Query: 583 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPP 641
GL+I Y +L TE +S++ +K A+ C + ++ R L + P
Sbjct: 325 GLIIIDYMQLMSGSGEENRATE-ISEISRSLKSLAKELNCPLIALSQLNRSLEQRQNKRP 383
Query: 642 NLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+ D+ S D + I+R N+D + I ++ + K RN VGT+ F
Sbjct: 384 VMSDLRESGAIEQDADLILFIYRDEFYNQDSQEKGI--AEIIIGKQRNGPVGTVKLTF 439
>gi|148274143|ref|YP_001223704.1| putative replicative DNA helicase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|170783383|ref|YP_001711717.1| replicative DNA helicase [Clavibacter michiganensis subsp.
sepedonicus]
gi|147832073|emb|CAN03046.1| putative replicative DNA helicase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|169157953|emb|CAQ03163.1| replicative DNA helicase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 459
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 128/318 (40%), Gaps = 45/318 (14%)
Query: 406 YLGPGALKEVVENA--ELYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGIST 453
Y G + ++V NA E+Y + G DY DEI+A + G G+ T
Sbjct: 145 YASEGEVVDLVNNAQAEIYGVTGGVEAEDYVPLTDAVTVAIDEIEAAKGK-DGQMTGVPT 203
Query: 454 GWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKF----VLCSMENKV 508
G+ L+ L N L PG+L IV P GKS L + A K+ + S+E
Sbjct: 204 GFADLDALTNGLHPGQLIIVAARPALGKS----TLALDFARAASIKYDMPSIFFSLEMGR 259
Query: 509 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWV 568
E A +LL P ++ G+ + Q + +++ I D P++ V
Sbjct: 260 SEIAMRLLSAEASVP-LQSMRKGTVDARDWTTIAQTRGRINDAPLYI----DDSPNMTLV 314
Query: 569 LDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 626
AK L+ G++ +VID + + V + E VS+ +K A+ V
Sbjct: 315 EIRAKCRRLKQKVGLKLVVIDYLQLMTSGKKVESRQQE-VSEFSRALKLMAKELQVPVIA 373
Query: 627 VAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR-----DPEAGPIDRVQ 677
++ P Q + + P + D+ S D I++HR +P AG D +
Sbjct: 374 LSQLNRGPEQRADKM---PAISDLRESGSLEQDADMVILLHRESAYEKDNPRAGEADFI- 429
Query: 678 VCVRKVRNKVVGTIGEAF 695
V K RN GTI F
Sbjct: 430 --VAKHRNGPTGTITVGF 445
>gi|94310913|ref|YP_584123.1| replicative DNA helicase [Cupriavidus metallidurans CH34]
gi|93354765|gb|ABF08854.1| replicative DNA helicase [Cupriavidus metallidurans CH34]
Length = 463
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 116/282 (41%), Gaps = 38/282 (13%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR ++ D G+ TG+ L+ + + + G+L IV G P+ GK+ A NI
Sbjct: 180 ERIDELYHRDSTTDVTGVPTGFIDLDRMTSGMQAGDLIIVAGRPSMGKT----AFSLNIG 235
Query: 493 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH G + SME + A ++L GS R+ G+
Sbjct: 236 EHVAVEQGLPVAVFSMEMAGVQLAMRML--------------GSVGRLDQHRLRTGRLLD 281
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T S+ R + D P++ + ++ + G GL+I Y +L
Sbjct: 282 EDWPRLTHSIQRMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 341
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 656
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 SGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 401
Query: 657 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
D + I+R+ +P++ ++ + K RN +GT+ FL
Sbjct: 402 DVILFIYRDEVYNPDSQDKGTAEIIIGKQRNGPIGTVRLTFL 443
>gi|407715969|ref|YP_006837249.1| Replicative helicase dnaB2 [Cycloclasticus sp. P1]
gi|407256305|gb|AFT66746.1| Replicative helicase dnaB2 [Cycloclasticus sp. P1]
Length = 465
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 24/264 (9%)
Query: 450 GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508
G STG+ L+E+ + L P +L IV G P+ GK+ + L NI +G + SME
Sbjct: 199 GASTGFSDLDEMTSGLQPADLIIVAGRPSMGKTSFAMNLAENIGIQSGLPIAVFSMEMPG 258
Query: 509 REHARKLLEKHIKKPFFEANYGGSAE----RM--TVEEFEQGKAWLSNTFSLIRCENDSL 562
A +++ + + G + RM ++ + K ++ +T +L E
Sbjct: 259 DSLAMRMMSSLGRIDQHKVRTGQLDDDEWPRMQSSINLLAEAKIFIDDTGALSPIE---- 314
Query: 563 PSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHAC 622
V A+ + HG GL++ Y +L S++ +S + +K A+
Sbjct: 315 -----VRARARRLMKEHGQLGLIVLDYLQLMQSPSKSESRVAEISDISRSLKALAKELNV 369
Query: 623 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRVQ 677
V ++ R L + P + D+ S D I I+R N D +A + +
Sbjct: 370 PVIALSQLNRNLEQRPNKRPVMSDLRESGSIEQDADVIIFIYRDEVYNEDSDAKGV--AE 427
Query: 678 VCVRKVRNKVVGTIGEAFLS-YNR 700
+ + K RN +GT FL Y R
Sbjct: 428 IIIGKQRNGPIGTCRLTFLGQYTR 451
>gi|340715527|ref|XP_003396263.1| PREDICTED: twinkle protein, mitochondrial-like [Bombus terrestris]
Length = 629
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 81/366 (22%), Positives = 145/366 (39%), Gaps = 41/366 (11%)
Query: 350 YLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGP 409
Y++ ++IL D A++ A++ +RC+ +R + K A E+
Sbjct: 265 YMESFKKLILWFGNDEISWYTAKQFAKKFNEKRCYFIR--PTDSQPRPKLAAEM-----N 317
Query: 410 GALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG-- 467
L ++ENA+ + F+D +EI + + W+ L +L G
Sbjct: 318 YNLNHILENAQPLWHKSIITFQDLKEEILSDLQNNDKVQ---GVKWKRYPILNRILKGHR 374
Query: 468 --ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 525
E T++TG GK+ ++ ++ G + S E + AR +L++ P
Sbjct: 375 RGEFTVLTGPTGCGKTTFMSEYSLDL-AMQGVNTLWGSFEIRNARLARTMLQQMAGVPLD 433
Query: 526 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 585
+ + E E GK L F + + IK V+D + A H + +V
Sbjct: 434 Q-----NLENFDSYANEFGK--LPIYFMTFHGQQN----IKVVMDAVEHATYIHDIAHVV 482
Query: 586 IDPYNELDHQRPVSQTETEYVS------QMLTMVKRFAQHHACHVWFVAHPRQLHNWVGE 639
ID + S +YV +++ + FA + CHV + HPR+ + GE
Sbjct: 483 ID---NVQFMMGTSNDLNKYVDRFWKQDEIIAKFRNFATMYNCHVTIIIHPRKERS-DGE 538
Query: 640 PPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYN 699
I GSA + DN ++I NR +Q+ +N+ G +G L ++
Sbjct: 539 LTT-SSIFGSAKASQEADNVLIIQDNRLSSLRGKKYLQI----AKNRYSGDLGIMILDFD 593
Query: 700 RVTGEY 705
R+ Y
Sbjct: 594 RLKLSY 599
>gi|187478660|ref|YP_786684.1| replicative DNA helicase [Bordetella avium 197N]
gi|115423246|emb|CAJ49779.1| replicative DNA helicase [Bordetella avium 197N]
Length = 457
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 114/282 (40%), Gaps = 38/282 (13%)
Query: 434 FDEIDAYYHRTS-GDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 491
+ ID YHR S D G+ TG+ L+++ + L PG+L IV G P+ GK+ + NI
Sbjct: 178 VERIDELYHRESESDVTGVPTGFTDLDKMTSGLQPGDLVIVAGRPSMGKTSF----SMNI 233
Query: 492 NEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA- 546
EH G + SME + A ++L GS + GK
Sbjct: 234 GEHVAIEQGLPVAVFSMEMGAVQLAMRML--------------GSVGMLDQHRMRTGKLI 279
Query: 547 ---WLSNTFSLIRCEN-----DSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQR 596
W T ++ + D P++ V A+ + G GL+I Y +L
Sbjct: 280 AEDWPRVTHAVQLMQEAQVYIDETPALSAMEVRARARRLARQCGQLGLIIIDYIQLMSAS 339
Query: 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 655
+ VS++ +K A+ C + ++ R L + P + D+ S
Sbjct: 340 SAGENRATEVSEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 399
Query: 656 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
D + I+R+ +P++ ++ + K RN +GT+ F
Sbjct: 400 ADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTF 441
>gi|339507761|gb|AEJ81324.1| DNA primase/helicase [Erwinia phage vB_EamM-M7]
Length = 637
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 130/623 (20%), Positives = 229/623 (36%), Gaps = 84/623 (13%)
Query: 121 KIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWK 180
+ K K+ G IG A CPKC D+ S++ +DG S CF + G+
Sbjct: 5 RFKEKEKGTFIGHTA--------CPKCGSSDAG----SVYRHDDG-SHSMTCFACEKGF- 50
Query: 181 GSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAY-FAERLISAETLRRN 239
D ++Q S + + K + + E ++ + +L A +R++ L
Sbjct: 51 ----PEWDVEKNQMSERTYEKTENTKRTFE-GYDMAAVKEDLVAMDLPDRVLPEALLESF 105
Query: 240 RVMQKRHGHEVVIAFPY-----------WRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLD 288
V G+ + A Y + G V ++ D KK + G+
Sbjct: 106 GVKVDTDGNGDICAHFYPTYKLDNAGVPYHAGYRVRHRFPDDYKKPELRGKLKDFSGGVG 165
Query: 289 DIEGE-------------SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSE 335
DI GE + I EGE++ ++ A L + V + ++PS
Sbjct: 166 DISGELQLFGSQRHAKGGKRLFIWEGEIESMT---ADLLTSMIVEKNRRKHYAHTSLPS- 221
Query: 336 EQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK-NDV 394
+ + + Y+ I + D D G E AR + E+ ++P+ D+
Sbjct: 222 --GANIKGIKDNYQYITSFEEIYICADNDEAGAKFMREAARILPIEKVRIFQYPENIKDL 279
Query: 395 DHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTG 454
+ ++ + K + NAE Y G+ NF D +D A +R
Sbjct: 280 SDWWKGSQKKRKVMLDEFKHRLYNAERYCPAGIKNFADGYD---AMKNRGKVPLIPFPES 336
Query: 455 WRALNELY--NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 512
+ LN L GE+T + + GKS + +I K + E+ E
Sbjct: 337 FGDLNALTFGGYGKGEITTIAAPSSVGKSAFTREMIYTAFTQTDEKIGVIPCEDTYEELM 396
Query: 513 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLA 572
L H+ K E Y + +E ++ LS + ++ +L+
Sbjct: 397 EMLCSVHLSKQISEIPY----DERNWDEIKEAHKQLSEGRRINIVDHQGAIDQDNLLEFI 452
Query: 573 KAAVLRHGVRGLVIDPYNELDHQRPVSQTET---EYVSQMLTMVKRFAQHH--ACHVWFV 627
V G +++DP +S+ ET E +S++L KR H CHV
Sbjct: 453 DYLVGAMGCGVIILDPVT-----LALSKAETDEEEVLSEILRRCKRLGYAHVNVCHVRKN 507
Query: 628 AHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR--- 684
+ ++ ++ G+ DI GS + N +++ RN+ DRV+ + K++
Sbjct: 508 SGGQKANSEGGDVAE-EDIKGSGAYFQISMNNLILTRNKVDS----DRVRKNITKIKLTK 562
Query: 685 ----NKVVGTIGEAFLSYNRVTG 703
K G G A+ Y+ TG
Sbjct: 563 CRRHGKSTGIAGYAY--YDGETG 583
>gi|73541690|ref|YP_296210.1| replicative DNA helicase [Ralstonia eutropha JMP134]
gi|72119103|gb|AAZ61366.1| primary replicative DNA helicase [Ralstonia eutropha JMP134]
Length = 463
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 116/282 (41%), Gaps = 38/282 (13%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR ++ D G+ TG+ L+++ + + PG+L IV G P+ GK+ A NI
Sbjct: 180 ERIDELYHRDSTTDVTGVPTGFIDLDKMTSGMQPGDLVIVAGRPSMGKT----AFSLNIG 235
Query: 493 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH G + SME + A ++L GS R+ G+
Sbjct: 236 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 281
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T ++ R + D P++ + ++ + G GL+I Y +L
Sbjct: 282 EDWPRLTHAIQRMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 341
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 656
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 GGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 401
Query: 657 DNGIVIHRNRDPEAGPIDR--VQVCVRKVRNKVVGTIGEAFL 696
D + I+R+ D+ ++ + K RN +GT+ FL
Sbjct: 402 DVILFIYRDEVYNQDSQDKGTAEIIIGKQRNGPIGTVRLTFL 443
>gi|423477637|ref|ZP_17454352.1| hypothetical protein IEO_03095 [Bacillus cereus BAG6X1-1]
gi|402429717|gb|EJV61800.1| hypothetical protein IEO_03095 [Bacillus cereus BAG6X1-1]
Length = 338
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 89/209 (42%), Gaps = 44/209 (21%)
Query: 225 YFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDF-NKKFWQEKDTEKV 283
Y +R IS T ++ R VVI + + NG+L N KYR K FW EKD + +
Sbjct: 137 YLNDRGISEGTQCAMKIGYDRIRQAVVIPW-FDTNGRLANIKYRKTRGKAFWYEKDGKPI 195
Query: 284 ---FYGLDDIEGESDI---IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK-----NV 332
YGL + +I + E E+D +S AG + +G S +K
Sbjct: 196 GDLIYGLH-LAYRRNIKRAVYCEAEIDAMSFMTAG---VFGLANGGSSFNQRKADQLLKS 251
Query: 333 PSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV-GRERCWRVRWPKK 391
P EE +++ D DP G+ L +EL + + G+ R
Sbjct: 252 PIEE--------------------LVIVADNDPAGEKLRKELEKYLNGKIRL------TN 285
Query: 392 NDVDHFKDANEVLMYLGPGALKEVVENAE 420
+ KDANE L+ G G+L VV+NAE
Sbjct: 286 GYIQGHKDANEALVKEGKGSLISVVDNAE 314
>gi|444517523|gb|ELV11626.1| Twinkle protein, mitochondrial [Tupaia chinensis]
Length = 506
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 88/412 (21%), Positives = 160/412 (38%), Gaps = 53/412 (12%)
Query: 295 DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA 354
++++ E+D L++ ++ +++P G + + +P YL+Q
Sbjct: 81 EVVLTSRELDSLAVSQSTGQPTLALPRGT-ACLPPTLLP----------------YLEQF 123
Query: 355 SRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKE 414
RI+ D A+ AR++ +RC VR P + N+ L L
Sbjct: 124 RRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVR-PGDQQPSPLEALNQGL------NLSR 176
Query: 415 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELT 470
V+ A + +FR +E+ S E W +L +L G ELT
Sbjct: 177 VLRTALPAWHKSIVSFRQLREEV---LGELSNVEQVAGIHWSRFPDLNRLLKGHRKGELT 233
Query: 471 IVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYG 530
+ TG SGK+ +I ++ G + S E AR +L +
Sbjct: 234 VFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEISNVRLARVMLTQF----------- 281
Query: 531 GSAERMTVEEFEQGKAWLS--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDP 588
+ R+ E+ ++ W L SI+ V+D + AV + + +VID
Sbjct: 282 -AVGRLE-EQLDKYDEWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDISHVVIDN 339
Query: 589 YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISG 648
+ +S ++ ++FA ++CHV V HPR+ + + I G
Sbjct: 340 LQFMMGHEQLSTDRIAAQDYIIGAFRKFATDNSCHVTLVIHPRKEDD--DKELQTASIFG 397
Query: 649 SAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNR 700
SA + DN ++I ++R GP R ++ +N+ G +G L +N+
Sbjct: 398 SAKASQEADN-VLILQDRKLVTGPGKRY---LQVAKNRFDGDVGVFPLEFNK 445
>gi|350422873|ref|XP_003493311.1| PREDICTED: twinkle protein, mitochondrial-like [Bombus impatiens]
Length = 622
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 142/364 (39%), Gaps = 38/364 (10%)
Query: 350 YLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGP 409
Y++ ++IL D A++ A++ +RC+ +R + K A E+
Sbjct: 267 YMESFKKLILWFGNDEISWYTAKQFAKKFNEKRCYFIR--PTDSQPRPKLAAEM-----N 319
Query: 410 GALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG-- 467
L +++NA+ + F+D +EI + W+ + L +L G
Sbjct: 320 YNLNNILQNAQPLWHKSIITFQDLKEEILCDLQNNDKVQ---GVKWKRYSTLNRILKGHR 376
Query: 468 --ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 525
E T++TG GK+ ++ ++ G + S E + AR +L++ P
Sbjct: 377 RGEFTVLTGPTGCGKTTFMSEYSLDL-AMQGVNTLWGSFEIRNARLARTMLQQMAGVPLD 435
Query: 526 E--ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRG 583
E N+ A FE+ + TF +IK V+D + A H +
Sbjct: 436 ENLENFDSYAN-----AFEKLPIYFM-TFH-------GQQNIKVVMDAVEHATYIHDIAH 482
Query: 584 LVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPP 641
+VID + S+ + Q ++ + FA + CHV + HPR+ E
Sbjct: 483 VVIDNVQFMMGTYNDSKYMDRFWKQDEIVGKFRNFATMYNCHVTMIIHPRK--ERTDEEL 540
Query: 642 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRV 701
I GSA + DN ++I NR +QV +N+ G +G L +++
Sbjct: 541 TTSSIFGSAKASQEADNVLIIQDNRLTNLRGKKYLQV----AKNRYSGDLGIMILDFDKS 596
Query: 702 TGEY 705
Y
Sbjct: 597 KLSY 600
>gi|357285465|gb|AET72551.1| primase/helicase [Synechococcus phage S-CBP42]
Length = 352
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 81/361 (22%), Positives = 145/361 (40%), Gaps = 45/361 (12%)
Query: 357 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVV 416
+IL D D G A E + +R + + +KDA+E L P A+ + +
Sbjct: 1 MILMFDNDDAGNQAARECVQLFPPDRVFLAP------IAGYKDASEALQAQDPDAIMQAI 54
Query: 417 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGV 475
N + Y + + + FD + H D + LN + L GEL +T
Sbjct: 55 WNKKPYSPKSIIDGKSLFDLLSTPLHGKDAD-----YPYADLNRVTGGLRLGELVTITAG 109
Query: 476 PNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 535
+GKS IC + G ++E ++ +L+ KP N E
Sbjct: 110 SGTGKSTLCGE-ICQHLINQGQTVGYIALEESIKRTGLRLMTVVANKPLHLNN-----ES 163
Query: 536 MTVEEFE--------QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 587
++ EEF G +L + F + ++ +L+ + V GV+ +++D
Sbjct: 164 ISTEEFRSAFDRSVGSGHVFLRDGFGSVDPDS--------ILNDIRYMVKADGVQWIILD 215
Query: 588 PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH----NWVGEPPNL 643
+ L + E + + +T ++ F + + ++H R+ H + G +L
Sbjct: 216 HLSIL-LSGNATDDERKMIDVTMTKLRSFVEETGIGMVLISHLRRAHQDKGHEDGAQVSL 274
Query: 644 YDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR-NKVVGTIGEAFLSYNRVT 702
+ GS H I + + +V+ R+ AG +R Q+ V K R N G GE LS++ T
Sbjct: 275 GQLRGS-HSIAQLSD-LVVALQRNITAGE-NRSQLVVLKNRFNGQTGPAGE--LSFSTET 329
Query: 703 G 703
G
Sbjct: 330 G 330
>gi|378824245|ref|ZP_09846769.1| replicative DNA helicase [Sutterella parvirubra YIT 11816]
gi|378596931|gb|EHY30295.1| replicative DNA helicase [Sutterella parvirubra YIT 11816]
Length = 460
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 122/288 (42%), Gaps = 31/288 (10%)
Query: 437 IDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHA 495
ID Y +R S + G+STG++ L+ + L G+L I+ G P+ GK+ +L NI EH
Sbjct: 179 IDLYNNRNSSEITGVSTGYKNLDNVTAGLQRGDLIILAGRPSMGKT----SLALNIAEHV 234
Query: 496 GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG----KAWLSNT 551
G L + A +L ++ I + ++ ++ +G + W T
Sbjct: 235 GIHLELPVAVFSMEMGADQLTQRLIS----------AVGKIDAQKLRKGMLDDEDWDRFT 284
Query: 552 FSLIRCENDSL-------PSIKWVLDLAKAAVLRHGVRGLVIDPYNEL--DHQRPVSQTE 602
++ + EN + +I + + V + G GLV+ Y +L R S
Sbjct: 285 AAMHKLENKPIYIEETPALTINELASRTRRLVNQVGPLGLVVVDYIQLMQGSGRSNSDNR 344
Query: 603 TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 661
++ +S++ +K A+ + ++ R + + P + D+ S D +
Sbjct: 345 SQELSEISRGLKSLARELQVPIICLSQLNRSVDSRTNRRPMMSDLRESGAIEQDADIIMF 404
Query: 662 IHRN--RDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 707
I+R+ +PE + +V + K RN +GT+ FL N Y D
Sbjct: 405 IYRDVVYNPETPEKNLAEVIIAKQRNGPIGTLRMTFLGGNTRFEPYAD 452
>gi|371785557|emb|CCA66303.1| putative DNA primase/helicase [Erwinia phage phiEa116]
Length = 799
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 130/623 (20%), Positives = 230/623 (36%), Gaps = 84/623 (13%)
Query: 121 KIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWK 180
+ K K+ G IG A CPKC D+ S++ +DG S CF + G+
Sbjct: 5 RFKEKEKGTFIGHTA--------CPKCGSSDAG----SVYRHDDG-SHSMTCFACEKGF- 50
Query: 181 GSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAY-FAERLISAETLRRN 239
D ++Q S + + K + + T + ++ + +L A +R++ L
Sbjct: 51 ----PEWDVEKNQMSERTYEKTENTKR-TFEGYDMAAVKEDLVAMDLPDRVLPEALLESF 105
Query: 240 RVMQKRHGHEVVIAFPY-----------WRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLD 288
V G+ + A Y + G V ++ D KK + G+
Sbjct: 106 GVKVDTDGNGDICAHFYPTYKLDNAGVPYHAGYRVRHRFPDDYKKPELRGKLKDFSGGVG 165
Query: 289 DIEGE-------------SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSE 335
DI GE + I EGE++ ++ A L + V + ++PS
Sbjct: 166 DISGELQLFGSQRHAKGGKRLFIWEGEIESMT---ADLLTSMIVEKNRRKHYAHTSLPS- 221
Query: 336 EQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK-NDV 394
+ + + Y+ I + D D G E AR + E+ ++P+ D+
Sbjct: 222 --GANIKGIKDNYQYITSFEEIYICADNDEAGAKFMREAARILPIEKVRIFQYPENIKDL 279
Query: 395 DHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTG 454
+ ++ + K + NAE Y G+ NF D +D A +R
Sbjct: 280 SDWWKGSQKKRKVMLDEFKHRLYNAERYCPAGIKNFADGYD---AMKNRGKVPLIPFPES 336
Query: 455 WRALNELY--NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 512
+ LN L GE+T + + GKS + +I K + E+ E
Sbjct: 337 FGDLNALTFGGYGKGEITTIAAPSSVGKSAFTREMIYTAFTQTDEKIGVIPCEDTYEELM 396
Query: 513 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLA 572
L H+ K E Y + +E ++ LS + ++ +L+
Sbjct: 397 EMLCSVHLSKQISEIPY----DERNWDEIKEAHKQLSEGRRINIVDHQGAIDQDNLLEFI 452
Query: 573 KAAVLRHGVRGLVIDPYNELDHQRPVSQTET---EYVSQMLTMVKRFAQHH--ACHVWFV 627
V G +++DP +S+ ET E +S++L KR H CHV
Sbjct: 453 DYLVGAMGCGVIILDPVT-----LALSKAETDEEEVLSEILRRCKRLGYAHVNVCHVRKN 507
Query: 628 AHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR--- 684
+ ++ ++ G+ DI GS + N +++ RN+ DRV+ + K++
Sbjct: 508 SGGQKANSEGGDVAE-EDIKGSGAYFQISMNNLILTRNKVDS----DRVRKNITKIKLTK 562
Query: 685 ----NKVVGTIGEAFLSYNRVTG 703
K G G A+ Y+ TG
Sbjct: 563 CRRHGKSTGIAGYAY--YDGETG 583
>gi|448260458|ref|YP_007348558.1| putative primase/helicase [Escherichia phage phAPEC8]
gi|408385330|gb|AFU62761.1| putative primase/helicase [Escherichia phage phAPEC8]
Length = 592
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 102/486 (20%), Positives = 194/486 (39%), Gaps = 72/486 (14%)
Query: 240 RVMQKRHGHEVVIA---FPYWRNGKLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG 292
R ++ G ++V+ +P +LV K R DF+K Q +F + +
Sbjct: 117 RYEYRQEGDQMVVESCLYPTTIGKELVGFKRRIHPKDFSKPIGQVGKDVDLFGQIRFADR 176
Query: 293 ESDIIIVEGEMDKLS---MEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKM 349
++I GE D L+ M N +P + + ++ + Q +Y + K
Sbjct: 177 SHTVVITGGEHDALAAYQMLSENLDNKYELPAVVSGTTGETSMYKQVQ-AQYPFFEKFK- 234
Query: 350 YLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGP 409
+II+ D D G E + + + R + +R++ KDAN+ YL
Sbjct: 235 ------KIIVCMDNDKAGNEAFENIVKVLPRNKVYRMQM-------DLKDANQ---YLEE 278
Query: 410 GALKEVVE---NAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP 466
G K+ V+ +A LY G++ ++ E + T + N+L
Sbjct: 279 GRAKDFVKAFWSARLYTPAGVYASNVLYEAA------LECLESKMITLPPFMRVAANMLG 332
Query: 467 G-----ELTIVTGVPNSGKSEWIDALICNI-NEHAGWKFVLCSMENKVREHARKLLEKHI 520
G E+T++ + GK+ ++ + +I H + S+E ++++R LL +
Sbjct: 333 GGLVEEEITVILAKTSIGKTLMVNEITKHIIVAHPEHTLGILSLEATYKKYSRNLLSSFL 392
Query: 521 KKPFFEANYGGSAERMTVEE----FEQGKAWLSNTFS-------LIRCENDSLPSIKWVL 569
P R T EE E+ K + + + C +D ++ +
Sbjct: 393 HIPL---------HRKTPEEKFQILEENKEKILDFYEREDGSPRFYVC-DDRGADVESIK 442
Query: 570 DLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 629
+ ++ GV LVIDPY++L +S + + ++ T +KR + +A + ++H
Sbjct: 443 EKVLEMIIYFGVTILVIDPYSDL-----LSGMDVQAQEELATWLKRIMKEYAITIIVISH 497
Query: 630 PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA-GPIDRVQVCVRKVRNKVV 688
++ N E D GS+ F+ K GI + RD A P++R ++N+
Sbjct: 498 VKKSANGGNEHLTEDDAMGSS-FLAK-GAGITLALERDKAAEDPVERNTTHCFILKNREF 555
Query: 689 GTIGEA 694
G A
Sbjct: 556 SETGPA 561
>gi|396576970|emb|CBY99590.1| Phi92_gp161 [Enterobacteria phage phi92]
Length = 590
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 151/365 (41%), Gaps = 51/365 (13%)
Query: 350 YLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGP 409
+L Q +I+L D D G+A E+ + + R + + + DV KD N+ L+
Sbjct: 227 FLDQFKKIVLCMDNDEAGRAAVEKCVKILPRNKVYVMEL---TDV---KDPNQALV---E 277
Query: 410 GALKEVVE---NAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN--V 464
G + ++ A+LY G++ ++ A + R + + +
Sbjct: 278 GKIDHFIDRFFKAKLYTPAGVYASNVLYE---AALECLEAKMITLPPFMRVASNMLGGGL 334
Query: 465 LPGELTIVTGVPNSGKSEWIDALICNIN-EHAGWKFVLCSMENKVREHARKLLEKHIKKP 523
+ E+T++ + GK+ ++ + +I H + S+E ++++R LL + P
Sbjct: 335 VEEEITVILAKTSIGKTLLVNEITKHIILAHPEHTLGILSLEATYKKYSRNLLSSFLHIP 394
Query: 524 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRC---ENDSLPSIKWV------LDLAKA 574
R T EE E+ L + IR D P +D+ K
Sbjct: 395 L---------HRKTKEEKEK---ILKDNEEKIRDFYEREDGTPRFYVCDDRGANVDVIKE 442
Query: 575 AVLR----HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630
VL GV LVIDPY++L VSQ E ++ T +KR + +A + ++H
Sbjct: 443 KVLEMIIYFGVTILVIDPYSDLLSGMDVSQQE-----ELATWLKRIMKEYAITIVVISHV 497
Query: 631 RQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA-GPIDRVQVCVRKVRNKVVG 689
++ N E D GS+ F+ K GI I RD +A P++R + ++N+
Sbjct: 498 KKSSNNSNEHIVEDDAMGSS-FLAK-GAGITIALERDKQAEDPMERNRTYCYILKNREFS 555
Query: 690 TIGEA 694
G A
Sbjct: 556 ETGAA 560
>gi|303232314|ref|ZP_07319009.1| replicative DNA helicase [Atopobium vaginae PB189-T1-4]
gi|302481571|gb|EFL44636.1| replicative DNA helicase [Atopobium vaginae PB189-T1-4]
Length = 477
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 132/320 (41%), Gaps = 38/320 (11%)
Query: 404 LMYLGPGALKEVVENAE--LYPIMG---LFNFRDYFDEIDAYY-----HRTSGDEFGIST 453
L + P KEV+++AE L + N+ + + + Y + SG GI+T
Sbjct: 154 LAFDAPEDTKEVIDSAENMLLEVTNKEVASNYSPLSEVMSSLYTDLTEMQASGTPQGINT 213
Query: 454 GWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 512
+ ++ L + PG++ +V P GK+ + L N + G L S+E E A
Sbjct: 214 DYPTVDRWLQGLRPGQMVVVGARPGVGKTSFALNLAVNFANN-GASVALFSLEMSKVEIA 272
Query: 513 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL--SNTFSLIRCENDSLPSIKWVLD 570
++LL K A GGS + +Q A L +N S + D P
Sbjct: 273 QRLLSAQ-AKINLSAIRGGSIQS------DQWPAILQATNDLSQLDIMIDDTPGTTVTEI 325
Query: 571 LAKAA-VLRHGVRGLVIDPYNEL---DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 626
AKA +L RG+VI Y +L R + + VS+M +K A++ V
Sbjct: 326 RAKARRMLNKKERGIVIIDYLQLLSPPQGRFRADSRATEVSEMSRGIKIMAKNLEVPVVA 385
Query: 627 VAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN---------RDPEAGPIDRV 676
++ RQ+ + P L D+ S D I++ R+ + PE G D
Sbjct: 386 LSQLNRQVTGRSSQRPQLSDLRESGAIEQDADIVILLDRSMTEEEAQRPQRPEMGQTD-- 443
Query: 677 QVCVRKVRNKVVGTIGEAFL 696
+ + K R+ +GT+ AFL
Sbjct: 444 -LIIAKNRSGPLGTVSLAFL 462
>gi|226940658|ref|YP_002795732.1| DnaB [Laribacter hongkongensis HLHK9]
gi|226715585|gb|ACO74723.1| DnaB [Laribacter hongkongensis HLHK9]
Length = 471
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 117/285 (41%), Gaps = 41/285 (14%)
Query: 435 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
D+ID Y R + DE G+ TG+ L+E + L PG+L IV G P+ GK+ + L N+
Sbjct: 186 DKIDLLYSRDNPDEVTGVPTGFIDLDEKTSGLQPGDLIIVAGRPSMGKTAFSMNLAENVA 245
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK------- 545
H G + SME + A ++L GS R+ + G+
Sbjct: 246 IHTGLPVAVFSMEMPAAQLATRML--------------GSVGRLDQHKLRTGRFNDDDWD 291
Query: 546 ------AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL--DHQRP 597
L+ T I E L +++ + A G GLV+ Y +L
Sbjct: 292 RFGKAVGVLAETKIHID-ETPGLTALELRARTRRLARQYGGKLGLVVIDYLQLMSGSAHA 350
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN----LYDISGSAHFI 653
Q T +S++ +K A+ + V ++ QL+ V + PN + D+ S
Sbjct: 351 TQQNRTAEISEISRSLKSLARELSVPVIALS---QLNRSVEQRPNKRPMMSDLRESGAIE 407
Query: 654 NKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
D I ++R+ +P++ +V + K RN G + F+
Sbjct: 408 QDADLIIFMYRDEYYNPDSPDKGLAEVIIGKHRNGPTGIVRLTFM 452
>gi|300691701|ref|YP_003752696.1| replicative DNA helicase [Ralstonia solanacearum PSI07]
gi|299078761|emb|CBJ51421.1| replicative DNA helicase [Ralstonia solanacearum PSI07]
gi|344170005|emb|CCA82379.1| replicative DNA helicase [blood disease bacterium R229]
gi|344171555|emb|CCA84170.1| replicative DNA helicase [Ralstonia syzygii R24]
Length = 472
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 119/291 (40%), Gaps = 44/291 (15%)
Query: 435 DEIDAYYHRTS-GDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR S D GI TG+ L+ + + + G +L IV G P+ GK+ A NI
Sbjct: 189 ERIDELYHRDSQSDITGIPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKT----AFSLNIG 244
Query: 493 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH G + SME + A ++L GS R+ G+
Sbjct: 245 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 290
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 291 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 350
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 656
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 351 GGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 410
Query: 657 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
D + I+R++ +P++ ++ + K RN +GT+ FL GEY
Sbjct: 411 DVILFIYRDQVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTFL------GEY 455
>gi|374371324|ref|ZP_09629292.1| replicative DNA helicase [Cupriavidus basilensis OR16]
gi|373097140|gb|EHP38293.1| replicative DNA helicase [Cupriavidus basilensis OR16]
Length = 463
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 116/282 (41%), Gaps = 38/282 (13%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR +S D G+ TG+ L+ + + + G+L IV G P+ GK+ A NI
Sbjct: 180 ERIDELYHRDSSTDVTGVPTGFIDLDRMTSGMQAGDLIIVAGRPSMGKT----AFSLNIG 235
Query: 493 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH G + SME + A ++L GS R+ G+
Sbjct: 236 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 281
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T ++ R + D P++ + ++ + G GL++ Y +L
Sbjct: 282 EDWPRLTHAIQRMNDAQLFIDETPALTSMELRARSRRLARQCGQLGLIVIDYLQLMSGSG 341
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 656
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 GGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 401
Query: 657 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
D + I+R+ +P++ ++ + K RN +GT+ FL
Sbjct: 402 DVILFIYRDEVYNPDSQDKGTSEIIIGKQRNGPIGTVRLTFL 443
>gi|149690131|ref|XP_001499990.1| PREDICTED: twinkle protein, mitochondrial-like [Equus caballus]
Length = 682
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 131/584 (22%), Positives = 224/584 (38%), Gaps = 90/584 (15%)
Query: 152 SEELSLSLFLDEDGFSAVWMCFRAKCGW---KGSTSALVDNNRSQSSLKKFSKMK---TI 205
S S +LF+D+ + M A+ W + S D R L + + + +
Sbjct: 95 SATTSFNLFIDKTTGRFLCMTSLAEGSWEDFQASVEGRGDGAREGVLLSEAPEAEDSEEV 154
Query: 206 REITEDSLEL----EPLGNEL-RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG 260
R I + ++ L EP L R F ++ +TLRR V R +V FP++ G
Sbjct: 155 RRIWDRAIPLWELPEPEEAHLARVMFGLTKVTDDTLRRFSVRYLRPARSLV--FPWFSPG 212
Query: 261 KLVNCKYRDFNKK------FWQEKDTEKV-----FYGLDDI-EGESDIIIVEGEMDKLSM 308
L + + + E + +GL I + ++++ E+D L++
Sbjct: 213 SLRLRGLKLLGAEGQGDGVHYVETTIPRPGAYHNLFGLPLITRRDVEVVLTSRELDSLAL 272
Query: 309 EEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQ 368
++ L +++P G + + +P YL+Q RI+L D
Sbjct: 273 NQSTGLPTLALPRGT-ACLPPALLP----------------YLEQFRRIVLWLGDDLRSW 315
Query: 369 ALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLF 428
A+ AR++ +RC VR P + + N L + ++ A +
Sbjct: 316 EAAKLFARKLNPKRCSLVR-PGDHQPRPLEALNRGLNF------SRILRTALPAWHKSIV 368
Query: 429 NFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWI 484
+FR +E+ S E W +L +L G ELT+ TG SGK+ +I
Sbjct: 369 SFRQLREEV---LGELSNVEQVAGIRWGRFPDLNRLLKGHRKGELTVFTGPTGSGKTTFI 425
Query: 485 DAL---ICNINEHAGWKFVLCSMENKVR----EHARKLLEKHIKKPFFEANYGGSAERMT 537
+C + W S R + A LE + K Y A+R
Sbjct: 426 SEYALDLCTQGVNTLWGSFEISNVRLARVMLTQFAVGRLEDQLDK------YDEWADR-- 477
Query: 538 VEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
FE L F + SI+ V+D + AV + + +VID +
Sbjct: 478 ---FED----LPLYFMTFHGQQ----SIRTVIDTMQHAVYVYDICHVVIDNLQFMMGHEQ 526
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657
+S ++ ++FA ++CHV V HPR+ + + I GSA + D
Sbjct: 527 LSTDRIAAQDYIVGAFRKFATDNSCHVTLVIHPRKEDD--DKELQTASIFGSAKASQEAD 584
Query: 658 NGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
N ++I ++R GP R +QV +N+ G IG L +N+
Sbjct: 585 N-VLILQDRKLVTGPGKRYLQVS----KNRFDGDIGVFPLEFNK 623
>gi|390356451|ref|XP_786602.3| PREDICTED: twinkle protein, mitochondrial-like [Strongylocentrotus
purpuratus]
Length = 678
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 87/420 (20%), Positives = 170/420 (40%), Gaps = 61/420 (14%)
Query: 294 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ 353
++II+ E+D +++ E + +++P G + + ++ +P L+Q
Sbjct: 256 TEIILTANELDAMAVSEVIGQSALALPRGT-AYLPQEVLP----------------LLEQ 298
Query: 354 ASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE-VLMYLGPG-A 411
+I+L D A+ AR++ +RC+ +R DA+ L L G +
Sbjct: 299 FQKIVLWFGNDMRSWEAAKSFARKLNLKRCYFIRP---------LDAHPGPLQALTKGLS 349
Query: 412 LKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG---- 467
LK ++ A + +FR DE+ S E W+ L + G
Sbjct: 350 LKTILRQATPMSHKSIVSFRALRDEV---LGELSHAEQVAGVKWKRYPLLNKHMKGHRRG 406
Query: 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 527
ELT+ TG SGK+ ++ A + LC + ++ + K
Sbjct: 407 ELTVFTGPTGSGKTTFM----------AEYSLDLCMQGVNTLWGSFEIQNVRLAKIMLTQ 456
Query: 528 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSL---PSIKWVLDLAKAAVLRHGVRGL 584
+ E+ +++F++ W ++ F L+ + S+K V+D +V H + +
Sbjct: 457 FSMCNLEK-NIDKFDR---W-ADKFELLPLHFMTFHGQQSLKTVIDAMAHSVYVHDIEHV 511
Query: 585 VIDPYNELD--HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN 642
++D + +R +S ++ ++FA ++CHV V HPR+ +
Sbjct: 512 ILDNLQFMVGVSERQLSVDRFAIYDNLIAAFRKFATENSCHVSVVIHPRKEKE--SDELQ 569
Query: 643 LYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVT 702
I GSA + DN +++ R +QV V+N+ G +G L++N+ T
Sbjct: 570 TASIFGSAKASQEADNVLILQDRRMTALKGRKYIQV----VKNRFDGDLGIIPLTFNKET 625
>gi|328789280|ref|XP_003251258.1| PREDICTED: twinkle protein, mitochondrial-like [Apis mellifera]
Length = 452
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/372 (20%), Positives = 139/372 (37%), Gaps = 54/372 (14%)
Query: 350 YLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR----WPKKNDVDHFK-DANEVL 404
Y++ ++IL D A A+++ +RC+ +R P+ + N +L
Sbjct: 102 YMESFKKLILWFGNDEVSWYSARHFAKKLNEKRCYLIRPTDSQPRPTLAAKMNYNFNNIL 161
Query: 405 MYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNV 464
M P K ++ F D +EI E W+ L +
Sbjct: 162 MNAQPLWHKSII------------TFNDLKEEILIDLQNNDKVE---GVKWKRYTSLNRI 206
Query: 465 LPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI 520
L G E T++TG GK+ ++ ++ G + S E + R +L++ +
Sbjct: 207 LKGHRRGEFTVLTGPTGCGKTTFMSEYSLDL-AMQGINTLWGSFEIRNVRLIRTMLQQMV 265
Query: 521 KKPFFE-----ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA 575
P E Y + E++ + F + + IK V+D + A
Sbjct: 266 GVPLNENLENFYTYANAFEKLPI------------YFMTFHGQQN----IKVVMDAVEHA 309
Query: 576 VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFVAHPRQL 633
H + +VID + S+ + Q ++ + FA + CHV + HPR+
Sbjct: 310 TYVHDIAHVVIDNVQFMMGMTNDSKYIDRFWKQDDIIAKFRNFATTYNCHVTMIIHPRKE 369
Query: 634 HNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGE 693
++ E I GSA + DN ++I NR +QV +N+ G +G
Sbjct: 370 RSY--EELTTSSIFGSAKASQEADNILIIQDNRLTSIRGKKYLQVA----KNRYSGDLGI 423
Query: 694 AFLSYNRVTGEY 705
L +++ + Y
Sbjct: 424 MVLDFDKSSLSY 435
>gi|302879165|ref|YP_003847729.1| replicative DNA helicase [Gallionella capsiferriformans ES-2]
gi|302581954|gb|ADL55965.1| replicative DNA helicase [Gallionella capsiferriformans ES-2]
Length = 465
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 116/280 (41%), Gaps = 34/280 (12%)
Query: 435 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ I+ Y R + E G STG+ L+++ + L PG+L IV G P+ GK+ + + NI
Sbjct: 181 ERIETLYGRDNASEVTGTSTGFADLDKMTSGLQPGDLVIVAGRPSMGKTAFSINVAENIA 240
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----WL 548
+ + SME + A ++L GS ++ ++ GK W
Sbjct: 241 LDSKLPVAIFSMEMGAEQLAMRML--------------GSVGKLNQQDLRSGKLQDDDWG 286
Query: 549 SNTFSLIRCENDSLPSIKWVLDLAK--------AAVLRHGVRGLVIDPYNEL--DHQRPV 598
T +L + ND+ I L+ ++G GL++ Y +L +
Sbjct: 287 RLTHALGKL-NDAPLFIDETAALSSLDLRARARRLHRQYGQLGLIVVDYLQLMSSNAGKA 345
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCD 657
S+ +S++ +K A+ C V ++ R L + P + D+ S D
Sbjct: 346 SENRATEISEISRGLKGLAKELQCPVMALSQLNRSLEQRPNKRPVMSDLRESGAIEQDAD 405
Query: 658 NGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+ I+R+ + E ++ + K RN +GT+ AF
Sbjct: 406 LILFIYRDEVYNKETDDKGIAEIIIGKQRNGPIGTVALAF 445
>gi|262155783|ref|ZP_06028906.1| DNA primase/helicase [Vibrio cholerae INDRE 91/1]
gi|379741339|ref|YP_005333308.1| DNA primase/helicase [Vibrio cholerae IEC224]
gi|421332620|ref|ZP_15783098.1| toprim domain protein [Vibrio cholerae CP1046(19)]
gi|424586414|ref|ZP_18025995.1| toprim domain protein [Vibrio cholerae CP1030(3)]
gi|424598981|ref|ZP_18038164.1| toprim domain protein [Vibrio Cholerae CP1044(17)]
gi|424601707|ref|ZP_18040853.1| toprim domain protein [Vibrio cholerae CP1047(20)]
gi|262030374|gb|EEY49015.1| DNA primase/helicase [Vibrio cholerae INDRE 91/1]
gi|378794849|gb|AFC58320.1| DNA primase/helicase [Vibrio cholerae IEC224]
gi|395929227|gb|EJH39977.1| toprim domain protein [Vibrio cholerae CP1046(19)]
gi|395974768|gb|EJH84284.1| toprim domain protein [Vibrio cholerae CP1030(3)]
gi|395976860|gb|EJH86299.1| toprim domain protein [Vibrio cholerae CP1047(20)]
gi|408042978|gb|EKG79006.1| toprim domain protein [Vibrio Cholerae CP1044(17)]
Length = 544
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 118/495 (23%), Positives = 189/495 (38%), Gaps = 67/495 (13%)
Query: 144 CPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMK 203
CPKC D+ L +DG + CF C + DN R ++ K
Sbjct: 13 CPKCGSKDN------LARYDDGHA---HCFTNGCDY---FEPATDNQRPPRQKQQAKPKK 60
Query: 204 TIREITEDSLELEPLGNELRAYFAERLISAETLRRN--RVMQKRHG---HEVVIAFPYWR 258
+E T P+ E+RA +R I +T ++ +V Q G + + P R
Sbjct: 61 ERKEFT-------PIEGEVRA-LTKRGIREDTCKKYGYKVGQLSGGEWVQYIDVRDPLTR 112
Query: 259 NGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSME--EAGFLNC 316
+LV K R NK+F + G G +II EGE+D L++ ++
Sbjct: 113 --QLVAQKIRTENKQFLVKGTLTGELIGAHLFSGGKKLIITEGEIDMLTVSQVQSNKYPV 170
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
VS+P+G S +KK + N YL IIL D D G+ A E A
Sbjct: 171 VSLPNGISS--AKKAI------------MNNLDYLSNFEEIILCFDMDEVGREGAVEAAE 216
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 436
+ + P KD NE+L+ L + NA+ + GL + D +
Sbjct: 217 LLIDHNVKIMSLP-------LKDPNEMLLAGRTEELINAIWNAQEHRPDGLLSVEDLVEA 269
Query: 437 IDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHA 495
+ G+ ++ +N+ N GE+ + GK++++ A H
Sbjct: 270 ALKPLPK------GLPWIYQGMNDSSNGRHFGEIHTIGAGTGVGKTDFLCAQADFDIRHL 323
Query: 496 GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLI 555
K L MEN E + L K K+ ++EA G +++ VE Q KA+ T
Sbjct: 324 HQKVGLFFMENDPTEILQYLGGKADKRLYYEA---GHPDQLDVE--AQRKAYKKYTGRCF 378
Query: 556 RCENDSLPSIKWV-LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
+N L W + L ++ G R ID L + E + + ++ +
Sbjct: 379 IYDNFGL--CDWSKVKLKILYLIGRGYRIFYIDHLTAL--ATGGDKDEKKELEDIMADIA 434
Query: 615 RFAQHHACHVWFVAH 629
FA+ H V+H
Sbjct: 435 TFAKRHNVLFHLVSH 449
>gi|329913485|ref|ZP_08275954.1| Replicative DNA helicase [Oxalobacteraceae bacterium IMCC9480]
gi|327545343|gb|EGF30578.1| Replicative DNA helicase [Oxalobacteraceae bacterium IMCC9480]
Length = 483
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 114/277 (41%), Gaps = 30/277 (10%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID Y+R D G+ TG+ L+++ + L PG+L IV G P+ GK+ + + N+
Sbjct: 201 ERIDELYNRDNQSDITGVPTGFADLDKMTSGLQPGDLIIVAGRPSMGKTAFSINIGENVA 260
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----WL 548
G + SME + A ++L GS R+ GK W
Sbjct: 261 IDTGLPVAVFSMEMGGTQLAMRML--------------GSVGRLDQHRLRTGKLADEDWP 306
Query: 549 SNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
T ++ + + D P++ + ++ + G GL+I Y +L +
Sbjct: 307 RLTHAIQKMNDAQLYIDETPALNSIELRARSRRLSRQCGKLGLIIIDYLQLMSGNSAGEN 366
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 660
+S++ +K A+ C V ++ R L + P + D+ S D +
Sbjct: 367 RATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVIL 426
Query: 661 VIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
I+R+ +P++ ++ + K RN +G+I F
Sbjct: 427 FIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLTF 463
>gi|415905339|ref|ZP_11552510.1| Replicative DNA helicase [Herbaspirillum frisingense GSF30]
gi|407763362|gb|EKF72040.1| Replicative DNA helicase [Herbaspirillum frisingense GSF30]
Length = 451
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 121/284 (42%), Gaps = 40/284 (14%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID Y+R + D G+ TG+ L+++ + L PG+L IV G P+ GK+ A NI
Sbjct: 166 ERIDELYNRDNTSDITGVPTGFMDLDKMTSGLQPGDLIIVAGRPSMGKT----AFSINIG 221
Query: 493 EH----AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH +G + SME + A ++L GS R+ G+
Sbjct: 222 EHVAIESGLPVAVFSMEMGGAQLAMRML--------------GSVGRLDQHRLRTGRLLD 267
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 268 EDWPRLTHAIQKMNDAQFYIDETPALSPIELRARSRRLARQCGKLGLIIIDYLQLMSGNG 327
Query: 598 VSQTE--TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFIN 654
S +E +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 328 GSSSENRASEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQ 387
Query: 655 KCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
D + I+R+ +P++ ++ + K RN +G+I +FL
Sbjct: 388 DADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLSFL 431
>gi|302531306|ref|ZP_07283648.1| replicative DNA helicase [Streptomyces sp. AA4]
gi|302440201|gb|EFL12017.1| replicative DNA helicase [Streptomyces sp. AA4]
Length = 465
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 117/286 (40%), Gaps = 28/286 (9%)
Query: 412 LKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 459
+ EVV+ A+ +Y + DY DEIDA R G GI TG+ +
Sbjct: 158 IDEVVDRAQAAIYDVTERRTSEDYVALEDLLQPTMDEIDAIASR-GGQSQGIPTGFADFD 216
Query: 460 ELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 518
EL N L PG++ IV P GKS + + + G V+ S+E E ++L
Sbjct: 217 ELTNGLHPGQMIIVAARPGVGKSTLGLDFVRSASIKHGLTSVIFSLEMSRTEIVMRMLSA 276
Query: 519 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL- 577
K + G +M+ +++ + +S +DS P++ + AKA L
Sbjct: 277 EAKIRLADMRGG----KMSDDDWTRLARRMSEVSEAPLFVDDS-PNMTMMEIRAKARRLK 331
Query: 578 -RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHN 635
RH +R +V+D + + V + E VS+ +K A+ V ++ R
Sbjct: 332 QRHDLRLVVVDYLQLMTSGKRVESRQQE-VSEFSRQLKLLAKEIEVPVIAISQLNRGPEQ 390
Query: 636 WVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRV 676
+ P L D+ S D I+I+R DP AG D +
Sbjct: 391 RTDKKPMLSDLRESGSLEQDADIVILINRPDAWERDDPRAGEADLI 436
>gi|386811301|ref|ZP_10098527.1| replicative DNA helicase [planctomycete KSU-1]
gi|386406025|dbj|GAB61408.1| replicative DNA helicase [planctomycete KSU-1]
Length = 444
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 114/265 (43%), Gaps = 35/265 (13%)
Query: 450 GISTGWRALNELY-NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGW----KFVLCSM 504
G+STG+ L+++ + EL IV P+ GK+ +L NI EH G V+ S+
Sbjct: 186 GLSTGFYDLDDITCGLQASELIIVAARPSMGKT----SLALNIIEHVGVVEKKPAVIFSL 241
Query: 505 ENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN----- 559
E ++ A+ +L H + + G F K W + +F L
Sbjct: 242 EMSAQQVAQNMLCSHAQVDAHKLRMG----------FLDDKQWSNLSFGLGSLSEAPIFI 291
Query: 560 DSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVS-QTETEYVSQMLTMVKRF 616
D P + + AKA L+ + ++ +V+D ++ R S Q E +S+ L K
Sbjct: 292 DDTPGLTVLEVRAKARRLKAQYDIQVVVVDYLQLMESPRAESRQQEISIISRGL---KSL 348
Query: 617 AQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPI 673
++ + V V+ R + G P + D+ S D I++HR+ DPE
Sbjct: 349 SRELSIPVIAVSQLNRSVEAREGHKPRMSDLRESGSIEQDADVIILLHRDSYYDPEKD-- 406
Query: 674 DRVQVCVRKVRNKVVGTIGEAFLSY 698
+ ++ + K RN GT+ AF S+
Sbjct: 407 NTAELIIAKQRNGPTGTVKLAFRSH 431
>gi|432340127|ref|ZP_19589619.1| replicative DNA helicase [Rhodococcus wratislaviensis IFP 2016]
gi|430774806|gb|ELB90377.1| replicative DNA helicase [Rhodococcus wratislaviensis IFP 2016]
Length = 432
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 112/270 (41%), Gaps = 25/270 (9%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
DEID+ R G G+ TG+ L+E+ N L PG++ IV P GKS + + +
Sbjct: 159 MDEIDSIASR-GGISLGVPTGFVELDEITNGLHPGQMIIVAARPGVGKSTLGMDFLRSCS 217
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 552
G V+ S+E E +LL K + G +MT +++ + +S
Sbjct: 218 VKHGMASVMFSLEMSKTEIVMRLLSAEAKIKLGDMRSG----KMTDDDWTKLARRMSEIS 273
Query: 553 SLIRCENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 610
+DS P++ + AKA L +H ++ +VID + + V + E VS+
Sbjct: 274 EAPLFIDDS-PNLTMMEIRAKARRLKQKHDIKLIVIDYLQLMSSGKKVESRQQE-VSEFS 331
Query: 611 TMVKRFAQHHACHVWFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-- 664
+K A+ V + P Q + + P + D+ S D I+++R
Sbjct: 332 RSLKLLAKELEVPVVAICQLNRGPEQRQD---KRPQVADLRESGSLEQDADMVILLYRPD 388
Query: 665 ---NRDPEAGPIDRVQVCVRKVRNKVVGTI 691
DP G D + + K RN TI
Sbjct: 389 ATERDDPRGGEAD---LILGKHRNGPTATI 415
>gi|218290737|ref|ZP_03494819.1| DnaB domain protein helicase domain protein [Alicyclobacillus
acidocaldarius LAA1]
gi|218239275|gb|EED06474.1| DnaB domain protein helicase domain protein [Alicyclobacillus
acidocaldarius LAA1]
Length = 448
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 121/255 (47%), Gaps = 18/255 (7%)
Query: 448 EFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSEW-IDALICNINEHAGWKFVLCSME 505
E GI TGW +L+ L +L +V G + GKS + ++ I + G+K ++ S+E
Sbjct: 193 ERGILTGWASLDRLTLGWKRKDLIVVGGRTSVGKSAFSVEVAIRAARQ--GYKVLIFSLE 250
Query: 506 NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSI 565
E R + ++ G AE+ ++ +++ ++ C+ + +
Sbjct: 251 MS-EEQVRARMASNLAMVPLHLLMDGKAEKDDLDRVNNLGPFIA---TIAVCDKRGMTAE 306
Query: 566 KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ-TETEYVSQMLTMVKRFAQHHACHV 624
+ ++ + ++G+ +++D E+D ++P+ Q T ++++ +++ AQ C V
Sbjct: 307 EISTEMRRYK-RKYGLDLVIVDYIQEID-EKPLKQDTAGAALARVTRKLRKAAQVCDCAV 364
Query: 625 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 684
++ R+ G+ P L D+ GS+ D I++HR+RD E + +QV V K R
Sbjct: 365 MALSQLRREAE--GKAPTLADLFGSSGIETGADMIILLHRDRDEENK--NALQVHVAKHR 420
Query: 685 NKVVGTIGEAFLSYN 699
N G G+ + YN
Sbjct: 421 N---GPTGKVEMHYN 432
>gi|397733364|ref|ZP_10500081.1| replicative DNA helicase [Rhodococcus sp. JVH1]
gi|396930756|gb|EJI97948.1| replicative DNA helicase [Rhodococcus sp. JVH1]
Length = 426
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 112/270 (41%), Gaps = 25/270 (9%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
DEID+ R G G+ TG+ L+E+ N L PG++ IV P GKS + + +
Sbjct: 153 MDEIDSIASR-GGISLGVPTGFVELDEITNGLHPGQMIIVAARPGVGKSTLGMDFLRSCS 211
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 552
G V+ S+E E +LL K + G +MT +++ + +S
Sbjct: 212 VKHGMASVMFSLEMSKTEIVMRLLSAEAKIKLGDMRSG----KMTDDDWTKLARRMSEIS 267
Query: 553 SLIRCENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 610
+DS P++ + AKA L +H ++ +VID + + V + E VS+
Sbjct: 268 EAPLFIDDS-PNLTMMEIRAKARRLKQKHDIKLIVIDYLQLMSSGKKVESRQQE-VSEFS 325
Query: 611 TMVKRFAQHHACHVWFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-- 664
+K A+ V + P Q + + P + D+ S D I+++R
Sbjct: 326 RSLKLLAKELEVPVVAICQLNRGPEQRQD---KRPQVADLRESGSLEQDADMVILLYRPD 382
Query: 665 ---NRDPEAGPIDRVQVCVRKVRNKVVGTI 691
DP G D + + K RN TI
Sbjct: 383 ATERDDPRGGEAD---LILGKHRNGPTATI 409
>gi|424776830|ref|ZP_18203805.1| replicative DNA helicase [Alcaligenes sp. HPC1271]
gi|422887870|gb|EKU30264.1| replicative DNA helicase [Alcaligenes sp. HPC1271]
Length = 456
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 126/291 (43%), Gaps = 38/291 (13%)
Query: 435 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR E G+ TG+ L+++ + L PG+L IV G P+ GK+ + NI
Sbjct: 182 ERIDELYHREGDSEVTGVPTGFIDLDKMTSGLQPGDLVIVAGRPSMGKTSF----SMNIG 237
Query: 493 EHA----GWKFVLCSMENKVREHARK------LLEKH-IKKPFFEANYGGSAERMT--VE 539
EH G + SME + A + LL++H ++ A+ R+T V+
Sbjct: 238 EHVAIAQGLPVAVFSMEMGAVQLAMRMVGSVGLLDQHRMRTGKLTAD---DWPRLTHAVQ 294
Query: 540 EFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 599
+ ++ + ++ T L E V A+ + G GL+I Y +L
Sbjct: 295 QVQEAQIYIDETPGLSSME---------VRARARRLARQCGQLGLIIIDYLQLMSSSGGE 345
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDN 658
TE +S++ +K A+ C + ++ R L + P + D+ S D
Sbjct: 346 NRATE-ISEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADL 404
Query: 659 GIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 707
+ I+R+ +P++ ++ + K RN G IG L++ + ++D
Sbjct: 405 ILFIYRDEVYNPDSPDKGTAEIIIGKQRN---GPIGSVRLTFAGASTRFLD 452
>gi|237746921|ref|ZP_04577401.1| replicative DNA helicase [Oxalobacter formigenes HOxBLS]
gi|229378272|gb|EEO28363.1| replicative DNA helicase [Oxalobacter formigenes HOxBLS]
Length = 463
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 119/285 (41%), Gaps = 44/285 (15%)
Query: 435 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID Y+R + ++ G+ TG+ L+ + + L PG+L IV G P+ GK+ A NI
Sbjct: 182 ERIDELYNRDNQNDITGVPTGFIDLDRMTSGLQPGDLVIVAGRPSMGKT----AFSVNIG 237
Query: 493 EH----AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH +G + SME + A ++L GS R+ G+
Sbjct: 238 EHVAIESGLPVAVFSMEMSGAQLAMRML--------------GSVGRLDQHRLRTGRLAD 283
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W TF++ + D P++ A+ + GL+I Y +L
Sbjct: 284 EDWPRLTFAIQKMNEAQLYIDETPALSCTELRARARRLARQCSKLGLIIVDYLQLMAPSS 343
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN----LYDISGSAHFI 653
+ +S++ +K A+ C V ++ QL+ V + PN + D+ S
Sbjct: 344 AGENRATEISEISRGLKALAKELNCPVIALS---QLNRSVEQRPNKRPVMSDLRESGAIE 400
Query: 654 NKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
D + I+R+ +P++ ++ V K RN +G++ FL
Sbjct: 401 QDADLILFIYRDEVYNPDSPDKGMAEIIVGKQRNGPIGSVRLTFL 445
>gi|254282000|ref|ZP_04956968.1| replicative DNA helicase [gamma proteobacterium NOR51-B]
gi|219678203|gb|EED34552.1| replicative DNA helicase [gamma proteobacterium NOR51-B]
Length = 465
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 123/299 (41%), Gaps = 36/299 (12%)
Query: 408 GPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP- 466
GP +K ++E A L I LFN + GD G++TG+ LN + + L
Sbjct: 174 GPRGMKPLLEGA-LERIEDLFN--------------SGGDITGLTTGFIDLNRMTSGLQD 218
Query: 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 526
+L IV G P+ GK+ + LI N +H + SME + ++L K
Sbjct: 219 SDLVIVAGRPSMGKTSFAMNLIENAVDHTEKPLAVFSMEMPAEQLVIRMLSSVGKI---- 274
Query: 527 ANYGGSAERMTVEEFEQGKAW--LSNTFSLIRCEN---DSLPSI--KWVLDLAKAAVLRH 579
+ R+ + EQ + W LS + ++ N D P++ + A+ H
Sbjct: 275 -----NQTRVRTGKLEQ-EDWPKLSAAMNRLKDANVHIDDTPALTPTELRSRARRIAREH 328
Query: 580 GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVG 638
G G+++ Y +L ++ T +S++ +K A+ C V ++ R L
Sbjct: 329 GDLGMIMVDYLQLMRVAGAAEGRTAEISEISRSLKAIAKEFRCPVVALSQLNRSLEQRPN 388
Query: 639 EPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR--VQVCVRKVRNKVVGTIGEAF 695
+ P D+ S D + I+R+ DR ++ + K RN +GT AF
Sbjct: 389 KRPVNSDLRESGAIEQDADVIMFIYRDEVYHEDSPDRGVAEIIIGKQRNGPIGTCKLAF 447
>gi|226940430|ref|YP_002795504.1| Replicative DNA helicase [Laribacter hongkongensis HLHK9]
gi|226715357|gb|ACO74495.1| Replicative DNA helicase [Laribacter hongkongensis HLHK9]
Length = 458
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 22/252 (8%)
Query: 450 GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508
G+ TG AL++ + L PGEL +V G P+ GKS + +I N A V
Sbjct: 186 GLPTGMAALDDAIDGLHPGELIVVAGRPSMGKS-CLAEMIARTNAKA---------RRAV 235
Query: 509 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFS------LIRCENDSL 562
R H ++ + A+ G E + E+ + FS I + D+
Sbjct: 236 RFHTYEMPACDVVMRSAAADMGIPLENIRKARMERHELDRFMVFSSRQEGWQIVFDEDTG 295
Query: 563 PSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHAC 622
++ + A+ + G+ LV+D + + ++ ET + ++ + +KR A+
Sbjct: 296 ANVDRIAMRARRQKRKSGLDLLVVDHLHLMPYR---GDNETRGLGEITSSLKRLARDLQI 352
Query: 623 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-NRDPEAGPIDRVQVCV 680
V VA R+ G P L D+ GS D + HR + ++ P ++ V
Sbjct: 353 PVVLVAQLNREAGKNAGRRPTLTDLRGSGAIEQDADVIVFCHRPHYYDDSRPASEAELIV 412
Query: 681 RKVRNKVVGTIG 692
K RN VGT+G
Sbjct: 413 AKSRNGPVGTLG 424
>gi|375098295|ref|ZP_09744560.1| replicative DNA helicase [Saccharomonospora marina XMU15]
gi|374659028|gb|EHR53861.1| replicative DNA helicase [Saccharomonospora marina XMU15]
Length = 460
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 133/315 (42%), Gaps = 36/315 (11%)
Query: 412 LKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 459
+ EVV+ A+ +Y + DY DEIDA R G G+ TG+ L+
Sbjct: 153 INEVVDRAQAAIYDVTERRTSEDYVALEELLQPTMDEIDAIASR-GGTAQGVPTGFADLD 211
Query: 460 ELYNVL-PGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENKVREHARKLL 516
E+ N L PG++ IV P GKS +D A C+I G V+ S+E E ++L
Sbjct: 212 EVTNGLHPGQMIIVAARPGVGKSTLGLDFARSCSIRH--GLSSVIFSLEMSRTEIVMRML 269
Query: 517 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAV 576
+ + G RM+ +++ + +S +DS P++ + AKA
Sbjct: 270 SAEARIRLADMRGG----RMSDDDWTRLARRMSEISEAPLFIDDS-PNLTMMEIRAKARR 324
Query: 577 L--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQL 633
L R+ ++ +V+D Y +L ++ + VS+ +K A+ V ++ R
Sbjct: 325 LKQRNDLKLIVVD-YMQLMTSGKRVESRQQEVSEFSRQLKLLAKELEVPVVAISQLNRGP 383
Query: 634 HNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVCVRKVRNKVV 688
+ P L D+ S D ++IHR DP AG D + + K R
Sbjct: 384 EQRTDKRPMLADLRESGSLEQDADMVMLIHRPDAWERDDPRAGEAD---LILAKHRAGPT 440
Query: 689 GTIGEAF-LSYNRVT 702
TI A L Y+R T
Sbjct: 441 STISVAHQLHYSRFT 455
>gi|111020417|ref|YP_703389.1| replicative DNA helicase [Rhodococcus jostii RHA1]
gi|110819947|gb|ABG95231.1| replicative DNA helicase [Rhodococcus jostii RHA1]
Length = 469
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 112/270 (41%), Gaps = 25/270 (9%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
DEID+ R G G+ TG+ L+E+ N L PG++ IV P GKS + + +
Sbjct: 196 MDEIDSIASR-GGISLGVPTGFVELDEITNGLHPGQMIIVAARPGVGKSTLGMDFLRSCS 254
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 552
G V+ S+E E +LL K + G +MT +++ + +S
Sbjct: 255 VKHGMASVMFSLEMSKTEIVMRLLSAEAKIKLGDMRSG----KMTDDDWTKLARRMSEIS 310
Query: 553 SLIRCENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 610
+DS P++ + AKA L +H ++ +VID + + V + E VS+
Sbjct: 311 EAPLFIDDS-PNLTMMEIRAKARRLKQKHDIKLIVIDYLQLMSSGKKVESRQQE-VSEFS 368
Query: 611 TMVKRFAQHHACHVWFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-- 664
+K A+ V + P Q + + P + D+ S D I+++R
Sbjct: 369 RSLKLLAKELEVPVVAICQLNRGPEQRQD---KRPQVADLRESGSLEQDADMVILLYRPD 425
Query: 665 ---NRDPEAGPIDRVQVCVRKVRNKVVGTI 691
DP G D + + K RN TI
Sbjct: 426 ATERDDPRGGEAD---LILGKHRNGPTATI 452
>gi|393759222|ref|ZP_10348038.1| replicative DNA helicase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
gi|393162450|gb|EJC62508.1| replicative DNA helicase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
Length = 456
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 126/291 (43%), Gaps = 38/291 (13%)
Query: 435 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR E G+ TG+ L+++ + L PG+L IV G P+ GK+ + NI
Sbjct: 182 ERIDELYHREGDSEVTGVPTGFVDLDKMTSGLQPGDLVIVAGRPSMGKTSF----SMNIG 237
Query: 493 EHA----GWKFVLCSMENKVREHARK------LLEKH-IKKPFFEANYGGSAERMT--VE 539
EH G + SME + A + LL++H ++ A+ R+T V+
Sbjct: 238 EHVAIAQGLPVAVFSMEMGAVQLAMRMVGSVGLLDQHRMRTGKLTAD---DWPRLTHAVQ 294
Query: 540 EFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 599
+ ++ + ++ T L E V A+ + G GL+I Y +L
Sbjct: 295 QVQEAQIYIDETPGLSSME---------VRARARRLARQCGQLGLIIIDYLQLMSSSGGE 345
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDN 658
TE +S++ +K A+ C + ++ R L + P + D+ S D
Sbjct: 346 NRATE-ISEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADL 404
Query: 659 GIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 707
+ I+R+ +P++ ++ + K RN G IG L++ + ++D
Sbjct: 405 ILFIYRDEVYNPDSPDKGTAEIIIGKQRN---GPIGSVRLTFAGASTRFLD 452
>gi|420329804|ref|ZP_14831508.1| DNA primase/helicase [Shigella flexneri K-1770]
gi|391259011|gb|EIQ18092.1| DNA primase/helicase [Shigella flexneri K-1770]
Length = 412
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 20/174 (11%)
Query: 323 APSSVSKKNVP-SEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRE 381
A +S +VP + K Q++ L + I ++ D D G+ A E+A R+G
Sbjct: 4 AQYGISALSVPFGGGKGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEH 63
Query: 382 RCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYF-DEIDA 439
RC V P +KD NE LM + + + + A + L++ R+++ D I+A
Sbjct: 64 RCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYFDPEELYSAREFYQDTINA 116
Query: 440 YYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINE 493
+Y + ++ + W +L + + ELT+V GV GK+ C +NE
Sbjct: 117 FYGK---QQYLFNPPWESLADKFQFREAELTLVNGVNGHGKA-------CPLNE 160
>gi|163857364|ref|YP_001631662.1| replicative DNA helicase [Bordetella petrii DSM 12804]
gi|163261092|emb|CAP43394.1| dnaB [Bordetella petrii]
Length = 457
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 115/282 (40%), Gaps = 38/282 (13%)
Query: 434 FDEIDAYYHRTS-GDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 491
+ ID YHR D G+ TG+ L+++ + L PG+L IV G P+ GK+ + NI
Sbjct: 178 VERIDELYHREGDSDVTGVPTGFSDLDKMTSGLQPGDLVIVAGRPSMGKTSF----SMNI 233
Query: 492 NEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA- 546
EH G + SME + A ++L GS + GK
Sbjct: 234 GEHVAIEQGLPVAVFSMEMGAVQLAMRML--------------GSVGMLDQHRMRTGKLV 279
Query: 547 ---WLSNTFSLIRCEN-----DSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQR 596
W T ++ ++ D P++ + A++ L G GL+I Y +L
Sbjct: 280 ADDWPRVTHAVQLMQDAQVYIDETPALSAMEVRARSRRLARQCGQLGLIIIDYLQLMAGN 339
Query: 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 655
+ +S++ +K A+ C + ++ R L + P + D+ S
Sbjct: 340 GGGENRATEISEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 399
Query: 656 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
D + I+R+ +P++ ++ V K RN +GT+ F
Sbjct: 400 ADLILFIYRDEVYNPDSPDKGTAEIIVGKQRNGPIGTVRLTF 441
>gi|237749075|ref|ZP_04579555.1| replicative DNA helicase [Oxalobacter formigenes OXCC13]
gi|229380437|gb|EEO30528.1| replicative DNA helicase [Oxalobacter formigenes OXCC13]
Length = 463
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 126/294 (42%), Gaps = 33/294 (11%)
Query: 435 DEIDAYYHRTS-GDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID Y+R + D G+ TG+ L+ + + L PG+L IV G P+ GK+ + + N+
Sbjct: 182 ERIDELYNRDNRNDITGVPTGFMDLDRMTSGLQPGDLIIVAGRPSMGKTAFSVNIGENVA 241
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE----RMT--VEEFEQGKA 546
+G + SME + A ++L + G A+ R+T +++ + +
Sbjct: 242 IESGLPVAIFSMEMGGAQLAMRMLGSVGRLDQHRLRTGRLADEDWPRLTYAIQKMNEAQL 301
Query: 547 WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 606
++ T +L C + + + +K GL+I Y +L + +
Sbjct: 302 YIDETPAL-SCTDLRARARRLARQCSKL--------GLIIIDYLQLMSPSSAGENRATEI 352
Query: 607 SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN----LYDISGSAHFINKCDNGIVI 662
S++ +K A+ C V ++ QL+ V + PN + D+ S D + I
Sbjct: 353 SEISRGLKALAKELNCPVIALS---QLNRSVEQRPNKRPVMSDLRESGAIEQDADLILFI 409
Query: 663 HRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL-------SYNRVTGEYMD 707
+R+ +P++ ++ V K RN +G + FL +Y +G Y D
Sbjct: 410 YRDEVYNPDSADKGTAEIIVGKQRNGPIGNVRLTFLGQFTKFDNYATGSGSYND 463
>gi|153002957|ref|YP_001377282.1| replicative DNA helicase [Anaeromyxobacter sp. Fw109-5]
gi|152026530|gb|ABS24298.1| replicative DNA helicase [Anaeromyxobacter sp. Fw109-5]
Length = 474
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 112/269 (41%), Gaps = 35/269 (13%)
Query: 450 GISTGWRALNELYNVL---PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
G+ TG ++L++ N L PG LT++ P+ GK+ + + + AG K S+E
Sbjct: 203 GVPTGIQSLDK--NTLGFQPGTLTVLAARPSVGKTAFALNIATHAATRAGKKVAFFSLEM 260
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSA----ERMTVEEFEQGKA--WLSNTFSLIRCEND 560
+ A ++L + + + G + +++ + G A WL + F L E
Sbjct: 261 PSDQLALRMLASEARLDWRRLSAGQLSAYDWQKIATHADKLGAASIWLDDNFVLTPVELR 320
Query: 561 SLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRP--VSQTETEYVSQMLTMVKRF 616
S K L+ +G LV+ Y +L H SQ+ + ++ + +K
Sbjct: 321 S-----------KCRKLKRENGGLDLVMIDYLQLMHAPSDRASQSREQEIATISRSLKSL 369
Query: 617 AQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAG 671
A+ C + ++ R + GEPP L D+ S D + +HR N+D ++G
Sbjct: 370 AKELECPIVALSQLNRGVEKRKGEPPMLSDLRESGAIEQDADIVMFLHRNDEDNKDVQSG 429
Query: 672 PID----RVQVCVRKVRNKVVGTIGEAFL 696
VQ+ V K R GTI F
Sbjct: 430 TASGDTLEVQLVVAKQRQGPTGTIPLVFF 458
>gi|74318119|ref|YP_315859.1| primary replicative DNA helicase [Thiobacillus denitrificans ATCC
25259]
gi|74057614|gb|AAZ98054.1| DnaB helicase [Thiobacillus denitrificans ATCC 25259]
Length = 463
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 120/292 (41%), Gaps = 39/292 (13%)
Query: 430 FRDYFDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDAL 487
++ + ID YHR + G+ TG+ L++ + L PG+L IV G P+ GK+ + +
Sbjct: 180 LKEVVERIDELYHRDNDSGITGVPTGFHDLDQKTSGLQPGDLVIVAGRPSMGKTAFSINI 239
Query: 488 ICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA- 546
N+ G + SME + +++ GS R+ GK
Sbjct: 240 AENVALDTGLPVAVFSMEMGGTQLVMRMI--------------GSVGRLDQHRLRTGKLG 285
Query: 547 ---WLSNTFSLIRCEN-----DSLPSIKWVLDLAKAAVLRH---GVRGLVIDPYNELDHQ 595
W T++L + D P + VL+L A G GL++ Y +L
Sbjct: 286 EDDWQRLTYALGKLNEAPVYIDESPGLN-VLELRARARRLMRQCGKLGLIVIDYLQLMAG 344
Query: 596 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN----LYDISGSAH 651
+ +S++ +K A+ HV +A QL+ + + PN + D+ S
Sbjct: 345 SGGGENRATEISEISRALKGLAKE--LHVPVIAL-SQLNRGLEQRPNKRPVMSDLRESGA 401
Query: 652 FINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 700
D + I+R+ +P+ ++ + K RN +GT+ AFL Y R
Sbjct: 402 IEQDADVILFIYRDEVYNPDTQDKGTAEIIISKQRNGPIGTVRLAFLGEYTR 453
>gi|383862285|ref|XP_003706614.1| PREDICTED: twinkle protein, mitochondrial-like [Megachile
rotundata]
Length = 555
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 73/362 (20%), Positives = 148/362 (40%), Gaps = 34/362 (9%)
Query: 350 YLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGP 409
+++ ++IL D A A+++ +RC+ +R +D + ++ + +G
Sbjct: 200 FMESFKKLILWFGNDETSWHTARHFAKKLNEKRCYFIR-----PIDS-QPRPKLAVEIGY 253
Query: 410 GALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG-- 467
K +++NA+ + F++ +++ + + W+ L +L G
Sbjct: 254 D-FKSILQNAQPVWHKSIITFQEIREDVLSDLQNIEKVQ---GVKWKRYPTLNRILKGHR 309
Query: 468 --ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 525
E TI+TG SGK+ ++ ++ G + S E + A+ +L++ I P
Sbjct: 310 RGEFTILTGPTGSGKTTFMSEYSLDL-AMQGVSTLWGSFEIRNVRLAKTMLQQMIGAPL- 367
Query: 526 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 585
+ ++FE+ + TF +IK V+D + A H + +V
Sbjct: 368 --DKNLEDFNRYADDFEKLPIYFM-TFH-------GQQNIKVVMDAVEHATYVHDIAHVV 417
Query: 586 IDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNL 643
ID + S+ + +Q +++ + FA CHV + HPR+ N E
Sbjct: 418 IDNVQFMMGTSADSRHMDRFWTQDNIISRFRNFATKSNCHVTAIIHPRKERN--DEDLTT 475
Query: 644 YDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTG 703
I GSA + DN ++I R +QV +N+ G +G L +++++
Sbjct: 476 SSIFGSAKASQEADNVLIIQDKRLTSVRGKKYLQV----AKNRYSGDLGIMVLDFDKLSL 531
Query: 704 EY 705
Y
Sbjct: 532 SY 533
>gi|379711640|ref|YP_005266845.1| Replicative DNA helicase [Nocardia cyriacigeorgica GUH-2]
gi|374849139|emb|CCF66215.1| Replicative DNA helicase [Nocardia cyriacigeorgica GUH-2]
Length = 460
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 122/301 (40%), Gaps = 31/301 (10%)
Query: 412 LKEVVE--NAELYPIMGLFNFRDYF----------DEIDAYYHRTSGDEFGISTGWRALN 459
+ EVV+ AE+Y + D+ DEID+ R G G+ TG+ L+
Sbjct: 153 IAEVVDRAQAEVYEVTERRTTEDFLPLEELLQPTMDEIDSIASR-GGISLGVPTGFTELD 211
Query: 460 ELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 518
E+ N L PG++ IV P GKS + + + G V+ S+E E +LL
Sbjct: 212 EITNGLHPGQMIIVAARPGVGKSTLGMDFMRSCSIKHGLASVIFSLEMSRTEIVMRLLSA 271
Query: 519 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL- 577
K + G RM+ +++ + +S +DS P++ + AKA L
Sbjct: 272 EAKIKLGDMRSG----RMSDDDWTKLARRMSEISEAPLFVDDS-PNLTMMEIRAKARRLK 326
Query: 578 -RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHN 635
RH ++ +V+D + + V + E VS +K A+ V ++ R
Sbjct: 327 QRHDLKLVVVDYLQLMTSGKKVESRQQE-VSDFSRNLKLLAKELEVPVVAISQLNRGPEQ 385
Query: 636 WVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVCVRKVRNKVVGT 690
+ P + D+ S D I++HR DP G D + + K RN T
Sbjct: 386 RTDKRPMVSDLRESGSLEQDADMVILLHRPDAFERDDPRGGEAD---LILGKHRNGPTAT 442
Query: 691 I 691
I
Sbjct: 443 I 443
>gi|134095343|ref|YP_001100418.1| replicative DNA helicase [Herminiimonas arsenicoxydans]
gi|133739246|emb|CAL62295.1| Replicative DNA helicase [Herminiimonas arsenicoxydans]
Length = 461
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 117/282 (41%), Gaps = 38/282 (13%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID Y+R ++ D G+ TG+ L+ + + L PG+L IV G P+ GK+ A NI
Sbjct: 179 ERIDELYNRDSTSDITGVPTGFADLDRMTSGLQPGDLIIVAGRPSMGKT----AFSINIG 234
Query: 493 E----HAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
E +G + SME + A ++L GS R+ GK
Sbjct: 235 ETVAIESGLPVAVFSMEMGGTQLAMRML--------------GSVGRLDQHRLRTGKLAD 280
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 281 EDWPRLTHAIQKMNDAQLYIDETPALNSIELRARSRRLSRQCGKLGLIIIDYLQLMSANS 340
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 656
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 341 SGENRATEISEISRNLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 400
Query: 657 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
D + I+R+ +P++ ++ + K RN +G++ FL
Sbjct: 401 DVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSVRLTFL 442
>gi|74318086|ref|YP_315826.1| DnaB helicase [Thiobacillus denitrificans ATCC 25259]
gi|74057581|gb|AAZ98021.1| DnaB helicase [Thiobacillus denitrificans ATCC 25259]
Length = 466
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 118/280 (42%), Gaps = 45/280 (16%)
Query: 437 IDAYYHRTSGDEFGISTGWRALNELY-NVLPGELTIVTGVPNSGKSEWIDALICNINEHA 495
ID +H+ +G+ G+++G+ L+ L + PG+L IV G P+ GK+ + N+
Sbjct: 172 IDERFHK-AGEFSGVASGYGDLDRLTCGLQPGDLVIVAGRPSMGKTTLAVNIAENVAADG 230
Query: 496 GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGG---SAER---MTVEEFE------- 542
G V S+E AR+L+E+ + + +GG +A R M E+FE
Sbjct: 231 GVALVF-SLEMG----ARQLVERSVCR------FGGISTTAVRNGDMRQEDFERLLVAHK 279
Query: 543 --QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPV 598
QGK R D PS AKA ++H G LV+ Y +L
Sbjct: 280 RLQGK----------RLVIDDTPSTSPARMRAKARKVKHRYGRLDLVVIDYLQL--MAGD 327
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCD 657
T +E + + +K A+ V ++ R L + P L D+ S D
Sbjct: 328 GNTRSEQLGGLTRALKLMARELGAPVVLLSQLNRGLEQRTDKRPVLSDLRESGAIEQDAD 387
Query: 658 NGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+++HR D ++ +V +RK R +GT+ F
Sbjct: 388 VVLMVHRPDYYDADSPHTGLAEVLIRKQRMGPLGTVTLCF 427
>gi|354615369|ref|ZP_09033148.1| replicative DNA helicase [Saccharomonospora paurometabolica YIM
90007]
gi|353220282|gb|EHB84741.1| replicative DNA helicase [Saccharomonospora paurometabolica YIM
90007]
Length = 459
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 133/315 (42%), Gaps = 36/315 (11%)
Query: 410 GALKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRA 457
G + EVV+ A+ +Y + DY DEIDA R G G+ TG+
Sbjct: 150 GDINEVVDRAQAAIYDVTERRTSEDYVALEELLQPTMDEIDAIASR-GGTSQGVPTGFAD 208
Query: 458 LNELYNVL-PGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENKVREHARK 514
L+E+ N L PG++ IV P GKS +D A C+I G V+ S+E E +
Sbjct: 209 LDEVTNGLHPGQMIIVAARPGVGKSTLGLDFARACSIRN--GLSSVIFSLEMSRVEIVMR 266
Query: 515 LLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 574
+L + + G RM+ +++ + +S +DS P++ + AKA
Sbjct: 267 MLSAEARIRLADMRGG----RMSDDDWTRLARRMSEISEAPLFIDDS-PNLTMMEIRAKA 321
Query: 575 AVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PR 631
L R+ ++ +V+D Y +L ++ + VS+ +K A+ V ++ R
Sbjct: 322 RRLKQRNDLQLIVVD-YMQLMTSGKRVESRQQEVSEFSRQLKLLAKELEVPVVAISQLNR 380
Query: 632 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN-----RDPEAGPIDRVQVCVRKVRNK 686
+ P L D+ S D ++IHR DP AG D + + K R
Sbjct: 381 GPEQRTDKRPMLADLRESGSLEQDADMVMLIHRPDAFELDDPRAGEAD---LILAKHRAG 437
Query: 687 VVGTIGEAF-LSYNR 700
TI A L Y+R
Sbjct: 438 PTSTISVAHQLHYSR 452
>gi|6573520|pdb|1CR0|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene4
Protein Of Bacteriophage T7
gi|6573521|pdb|1CR1|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Dttp
gi|6573522|pdb|1CR2|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Datp
gi|6573523|pdb|1CR4|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Dtdp
Length = 296
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 104/259 (40%), Gaps = 45/259 (17%)
Query: 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 526
GE+ +VT GKS ++ G K L +E V E A L+ H + +
Sbjct: 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQ 94
Query: 527 ANYGGSAERMTVE--EFEQGKAWLSNTF---------SLIRCENDSLPSIKWVLDLAKAA 575
++ S +R +E +F+Q W F S E D L LAK A
Sbjct: 95 SD---SLKREIIENGKFDQ---WFDELFGNDTFHLYDSFAEAETDRL--------LAKLA 140
Query: 576 VLRHGVRGLVIDPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAHP 630
+R G+ VI LDH V E + + ++T +K FA+ + + H
Sbjct: 141 YMRSGLGCDVI----ILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196
Query: 631 R-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRN 685
+ + H G P ++ D+ GS D I + RN+ + + V VR ++
Sbjct: 197 KNPDKGKAHEE-GRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLVRILKC 251
Query: 686 KVVGTIGEA-FLSYNRVTG 703
+ G G A ++ YN+ TG
Sbjct: 252 RFTGDTGIAGYMEYNKETG 270
>gi|9257129|pdb|1E0J|A Chain A, Gp4d Helicase From Phage T7 Adpnp Complex
gi|9257130|pdb|1E0J|B Chain B, Gp4d Helicase From Phage T7 Adpnp Complex
gi|9257131|pdb|1E0J|C Chain C, Gp4d Helicase From Phage T7 Adpnp Complex
gi|9257132|pdb|1E0J|D Chain D, Gp4d Helicase From Phage T7 Adpnp Complex
gi|9257133|pdb|1E0J|E Chain E, Gp4d Helicase From Phage T7 Adpnp Complex
gi|9257134|pdb|1E0J|F Chain F, Gp4d Helicase From Phage T7 Adpnp Complex
gi|9257135|pdb|1E0K|A Chain A, Gp4d Helicase From Phage T7
gi|9257136|pdb|1E0K|B Chain B, Gp4d Helicase From Phage T7
gi|9257137|pdb|1E0K|C Chain C, Gp4d Helicase From Phage T7
gi|9257138|pdb|1E0K|D Chain D, Gp4d Helicase From Phage T7
gi|9257139|pdb|1E0K|E Chain E, Gp4d Helicase From Phage T7
gi|9257140|pdb|1E0K|F Chain F, Gp4d Helicase From Phage T7
Length = 289
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 104/259 (40%), Gaps = 45/259 (17%)
Query: 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 526
GE+ +VT GKS ++ G K L +E V E A L+ H + +
Sbjct: 45 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQ 104
Query: 527 ANYGGSAERMTVE--EFEQGKAWLSNTF---------SLIRCENDSLPSIKWVLDLAKAA 575
++ S +R +E +F+Q W F S E D L LAK A
Sbjct: 105 SD---SLKREIIENGKFDQ---WFDELFGNDTFHLYDSFAEAETDRL--------LAKLA 150
Query: 576 VLRHGVRGLVIDPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAHP 630
+R G+ VI LDH V E + + ++T +K FA+ + + H
Sbjct: 151 YMRSGLGCDVII----LDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 206
Query: 631 R-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRN 685
+ + H G P ++ D+ GS D I + RN+ + + V VR ++
Sbjct: 207 KNPDKGKAHEE-GRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLVRILKC 261
Query: 686 KVVGTIGEA-FLSYNRVTG 703
+ G G A ++ YN+ TG
Sbjct: 262 RFTGDTGIAGYMEYNKETG 280
>gi|291007707|ref|ZP_06565680.1| replicative DNA helicase [Saccharopolyspora erythraea NRRL 2338]
Length = 464
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 118/286 (41%), Gaps = 28/286 (9%)
Query: 412 LKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 459
++EVV+ A+ +Y + DY DEIDA R G+ GI TG+ L+
Sbjct: 157 IEEVVDRAQAAIYDVTERRTSEDYAALEDLLQPTMDEIDAIASR-GGESLGIPTGFTDLD 215
Query: 460 ELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 518
+ N L PG++ IV P GKS + + G V+ S+E E ++L
Sbjct: 216 AVTNGLHPGQMIIVAARPGVGKSTLGLDFARSASIKHGLASVIFSLEMGKTEIVMRMLSA 275
Query: 519 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL- 577
+ + G RMT +++ + +S +DS P++ + AKA L
Sbjct: 276 EARIRLGDMRGG----RMTDDDWTRLARRMSEISEAPLFVDDS-PNLTMMEIRAKARRLK 330
Query: 578 -RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHN 635
R+ ++ +V+D Y +L ++ + VS+ +K A+ V ++ R
Sbjct: 331 QRNDIQLIVVD-YMQLMTSGKRVESRQQEVSEFSRNLKLLAKELEVPVVAISQLNRGPEQ 389
Query: 636 WVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRV 676
+ P L D+ S D I+IHR DP G D +
Sbjct: 390 RTDKKPQLSDLRESGSLEQDADMVILIHRPDAFERDDPRMGEADLI 435
>gi|134103767|ref|YP_001109428.1| replicative DNA helicase [Saccharopolyspora erythraea NRRL 2338]
gi|133916390|emb|CAM06503.1| replicative DNA helicase [Saccharopolyspora erythraea NRRL 2338]
Length = 462
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 118/286 (41%), Gaps = 28/286 (9%)
Query: 412 LKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 459
++EVV+ A+ +Y + DY DEIDA R G+ GI TG+ L+
Sbjct: 155 IEEVVDRAQAAIYDVTERRTSEDYAALEDLLQPTMDEIDAIASR-GGESLGIPTGFTDLD 213
Query: 460 ELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 518
+ N L PG++ IV P GKS + + G V+ S+E E ++L
Sbjct: 214 AVTNGLHPGQMIIVAARPGVGKSTLGLDFARSASIKHGLASVIFSLEMGKTEIVMRMLSA 273
Query: 519 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL- 577
+ + G RMT +++ + +S +DS P++ + AKA L
Sbjct: 274 EARIRLGDMRGG----RMTDDDWTRLARRMSEISEAPLFVDDS-PNLTMMEIRAKARRLK 328
Query: 578 -RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHN 635
R+ ++ +V+D Y +L ++ + VS+ +K A+ V ++ R
Sbjct: 329 QRNDIQLIVVD-YMQLMTSGKRVESRQQEVSEFSRNLKLLAKELEVPVVAISQLNRGPEQ 387
Query: 636 WVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRV 676
+ P L D+ S D I+IHR DP G D +
Sbjct: 388 RTDKKPQLSDLRESGSLEQDADMVILIHRPDAFERDDPRMGEADLI 433
>gi|237757028|ref|ZP_04585480.1| replicative DNA helicase [Sulfurihydrogenibium yellowstonense SS-5]
gi|237690808|gb|EEP59964.1| replicative DNA helicase [Sulfurihydrogenibium yellowstonense SS-5]
Length = 461
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 110/262 (41%), Gaps = 28/262 (10%)
Query: 450 GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508
GI TG+ L+ L PG+L I+ P GK+ + +++ +++ S+E
Sbjct: 176 GIPTGFYDLDRLTTGFHPGDLVIIAARPGMGKTSFALSILHHLSVVDEVPSAFFSLEMSR 235
Query: 509 REHARKLLEKHIKKPFFEANYG----GSAERMTVEEFEQGKA--WLSNTFSLIRCENDSL 562
++ A +LL + K P + G E++T + A ++ +T SL
Sbjct: 236 QQIAMRLLGEESKIPLKKIRSGFLNESEIEKLTEVALKMMNAPLYIDDTASL-------- 287
Query: 563 PSIKWVLDL-AKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 619
+LDL AKA L+ V+ +V+D L R V + E V+++ +K A+
Sbjct: 288 ----SILDLKAKARRLKKEKDVKIIVVDYLQLLRSHRRVENRQQE-VAEISRGLKALAKE 342
Query: 620 HACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPID 674
V +A RQ + P L D+ S D + IHR ++P
Sbjct: 343 LGIPVVALAQLSRQAEMRADKRPQLADLRESGSIEQDADLVLFIHRPEYYKKNPSPQEEG 402
Query: 675 RVQVCVRKVRNKVVGTIGEAFL 696
++ + K RN GTI AF+
Sbjct: 403 LAEIIIAKQRNGPTGTIHLAFI 424
>gi|152979846|ref|YP_001352995.1| replicative DNA helicase [Janthinobacterium sp. Marseille]
gi|151279923|gb|ABR88333.1| replicative DNA helicase [Janthinobacterium sp. Marseille]
Length = 461
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 116/282 (41%), Gaps = 38/282 (13%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID Y+R ++ D G+ TG+ L+ + + L PG+L IV G P+ GK+ A NI
Sbjct: 179 ERIDELYNRDSTSDITGVPTGFADLDRMTSGLQPGDLIIVAGRPSMGKT----AFSINIG 234
Query: 493 E----HAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
E +G + SME + A ++L GS R+ G+
Sbjct: 235 ETVAIESGLPVAVFSMEMGGAQLAMRML--------------GSVGRLDQHRLRTGRLAD 280
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 281 EDWPRLTHAIQKMNDAQLYIDETPALNSIELRARSRRLSRQCGKLGLIIIDYLQLMSANS 340
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 656
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 341 AGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 400
Query: 657 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
D + I+R+ +P++ ++ + K RN +G + FL
Sbjct: 401 DVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGAVRLTFL 442
>gi|404377921|ref|ZP_10983021.1| replicative DNA helicase [Ralstonia sp. 5_2_56FAA]
gi|348616040|gb|EGY65546.1| replicative DNA helicase [Ralstonia sp. 5_2_56FAA]
Length = 473
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 118/291 (40%), Gaps = 44/291 (15%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR D G+ TG+ L+ + + + G +L IV G P+ GK+ A NI
Sbjct: 190 ERIDELYHRDNQSDITGVPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKT----AFSLNIG 245
Query: 493 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH G + SME + A ++L GS R+ G+
Sbjct: 246 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 291
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T ++ + + D P++ + ++ + G GL++ Y +L
Sbjct: 292 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIVIDYLQLMSGSG 351
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 656
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 352 SGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 411
Query: 657 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
D + I+R++ +P++ ++ + K RN +GT+ FL GEY
Sbjct: 412 DVILFIYRDQVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTFL------GEY 456
>gi|332283722|ref|YP_004415633.1| replicative DNA helicase [Pusillimonas sp. T7-7]
gi|330427675|gb|AEC19009.1| replicative DNA helicase [Pusillimonas sp. T7-7]
Length = 460
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 119/280 (42%), Gaps = 34/280 (12%)
Query: 434 FDEIDAYYHRTS-GDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 491
+ ID YHR D G+ TG+ L+ + + L G+L IV G P+ GK+ + NI
Sbjct: 181 VERIDELYHREGDSDVTGVPTGFADLDRMTSGLQAGDLVIVAGRPSMGKTSF----SMNI 236
Query: 492 NEHA----GWKFVLCSMENKVREHARK------LLEKH-IKKPFFEANYGGSAERMT--V 538
EH G + SME + A + +L++H ++ A+ R+T V
Sbjct: 237 GEHVAIEQGLPVAVFSMEMGAVQLAMRMVGSVGMLDQHRMRTGKLTAD---DWPRLTHAV 293
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
++ ++ + ++ T +L E V A+ + G G++I Y +L
Sbjct: 294 QQVQEAQIYIDETPALTSME---------VRARARRLARQCGQLGMIIIDYMQLMSGSSS 344
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCD 657
+ +S++ +K A+ C + ++ R L + P + D+ S D
Sbjct: 345 GENRATEISEISRSLKSLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDAD 404
Query: 658 NGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+ I+R+ +P++ ++ V K RN +GT+ F
Sbjct: 405 LILFIYRDEVYNPDSPDKGTAEIIVGKQRNGPIGTVRLTF 444
>gi|397669073|ref|YP_006510608.1| replicative DNA helicase [Propionibacterium propionicum F0230a]
gi|395141819|gb|AFN45926.1| replicative DNA helicase [Propionibacterium propionicum F0230a]
Length = 454
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 126/323 (39%), Gaps = 30/323 (9%)
Query: 404 LMYLGPGALKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEF-G 450
L Y G G + ++V+ A+ L+ + G DY FDE++A + SGD G
Sbjct: 132 LGYQGQGEVDKIVDEAQQTLFEVTGSRASEDYQSLNDLMEPTFDEMEAIAN--SGDALSG 189
Query: 451 ISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 509
+ TG+ L+ L N L PG++ IV P GKS + + H V S+E
Sbjct: 190 VPTGFNELDSLTNGLHPGQMIIVAARPGVGKSTFALDVCRAAAIHHDLATVFFSLEMSRT 249
Query: 510 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVL 569
E K+L P + GG + + LS I D P++ +
Sbjct: 250 EIVMKILSAEASVP-LQKIRGGRMDENDWQRITDRSVTLSGKPLFI----DDSPNLTMME 304
Query: 570 DLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 627
AKA L R+ ++ + ID + + V + E VS+ +K A+ V +
Sbjct: 305 IRAKARRLKQRNNLQLICIDYIQLMTSGKKVESRQLE-VSEFSRQIKLLAKELEVPVIAL 363
Query: 628 AH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID--RVQVC--VRK 682
+ R P L D+ S D I++HR P D R Q + K
Sbjct: 364 SQLSRNAEQRKDGVPQLADLRESGSLEQDADIVIMLHRPELYTQNPTDEERGQAAFHILK 423
Query: 683 VRNKVVGTIGEAFLS-YNRVTGE 704
RN + I F Y+R T +
Sbjct: 424 HRNGQLDKIDALFQGHYSRFTNQ 446
>gi|299067363|emb|CBJ38562.1| replicative DNA helicase [Ralstonia solanacearum CMR15]
Length = 472
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 118/291 (40%), Gaps = 44/291 (15%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR D G+ TG+ L+ + + + G +L IV G P+ GK+ A NI
Sbjct: 189 ERIDELYHRDNQSDITGVPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKT----AFSLNIG 244
Query: 493 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH G + SME + A ++L GS R+ G+
Sbjct: 245 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 290
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T ++ + + D P++ + ++ + G GL++ Y +L
Sbjct: 291 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIVIDYLQLMSGSG 350
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 656
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 351 SGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 410
Query: 657 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
D + I+R++ +P++ ++ + K RN +GT+ FL GEY
Sbjct: 411 DVILFIYRDQVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTFL------GEY 455
>gi|187928275|ref|YP_001898762.1| replicative DNA helicase [Ralstonia pickettii 12J]
gi|187725165|gb|ACD26330.1| replicative DNA helicase [Ralstonia pickettii 12J]
Length = 462
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 118/291 (40%), Gaps = 44/291 (15%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR D G+ TG+ L+ + + + G +L IV G P+ GK+ A NI
Sbjct: 179 ERIDELYHRDNQSDITGVPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKT----AFSLNIG 234
Query: 493 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH G + SME + A ++L GS R+ G+
Sbjct: 235 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 280
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T ++ + + D P++ + ++ + G GL++ Y +L
Sbjct: 281 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIVIDYLQLMSGSG 340
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 656
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 341 SGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 400
Query: 657 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
D + I+R++ +P++ ++ + K RN +GT+ FL GEY
Sbjct: 401 DVILFIYRDQVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTFL------GEY 445
>gi|241662848|ref|YP_002981208.1| replicative DNA helicase [Ralstonia pickettii 12D]
gi|309782226|ref|ZP_07676955.1| replicative DNA helicase [Ralstonia sp. 5_7_47FAA]
gi|240864875|gb|ACS62536.1| replicative DNA helicase [Ralstonia pickettii 12D]
gi|308918997|gb|EFP64665.1| replicative DNA helicase [Ralstonia sp. 5_7_47FAA]
Length = 462
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 118/291 (40%), Gaps = 44/291 (15%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR D G+ TG+ L+ + + + G +L IV G P+ GK+ A NI
Sbjct: 179 ERIDELYHRDNQSDITGVPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKT----AFSLNIG 234
Query: 493 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH G + SME + A ++L GS R+ G+
Sbjct: 235 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 280
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T ++ + + D P++ + ++ + G GL++ Y +L
Sbjct: 281 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIVIDYLQLMSGSG 340
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 656
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 341 SGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 400
Query: 657 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
D + I+R++ +P++ ++ + K RN +GT+ FL GEY
Sbjct: 401 DVILFIYRDQVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTFL------GEY 445
>gi|340787667|ref|YP_004753132.1| replicative DNA helicase [Collimonas fungivorans Ter331]
gi|340552934|gb|AEK62309.1| Replicative DNA helicase [Collimonas fungivorans Ter331]
Length = 466
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 117/278 (42%), Gaps = 30/278 (10%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID Y+R D G+STG+ L+++ + L G+L IV G P+ GK+ + + N+
Sbjct: 183 ERIDELYNRDNQSDITGVSTGFIDLDKMTSGLQKGDLVIVAGRPSMGKTAFSVNIGENVA 242
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----WL 548
+G + SME + A ++L GS ++ G+ W
Sbjct: 243 IESGLPVAIFSMEMGGTQLAMRML--------------GSVGKLDQHRLRTGRLNDEDWP 288
Query: 549 SNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
T ++ + + D P++ + A+ + G GL+I Y +L +
Sbjct: 289 RLTHAIQKMNDAQLFIDETPALSSIELRARARRLSRQCGTLGLIIIDYLQLMSANNAGEN 348
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 660
+S++ +K A+ C V ++ R L + P + D+ S D +
Sbjct: 349 RATEISEISRNLKGLAKELQCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVIL 408
Query: 661 VIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
I+R+ +P++ ++ + K RN +G++ +F+
Sbjct: 409 FIYRDEVYNPDSQEKGTAEIIIGKQRNGPIGSVRLSFI 446
>gi|291335902|gb|ADD95497.1| T7-like primase/helicase [uncultured phage MedDCM-OCT-S08-C41]
Length = 408
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 101/425 (23%), Positives = 170/425 (40%), Gaps = 77/425 (18%)
Query: 293 ESDIIIVEGEMDKLSMEEAG-FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 351
E ++IVEGEMD +S+ EA + VS+P+GA + +KK + + Y W +
Sbjct: 12 EQKLVIVEGEMDAMSVWEAQPNWSVVSIPNGA--AAAKKAIQN-------NYEW-----I 57
Query: 352 KQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK---NDVDHFKDANEVLMYLG 408
+++L D D GQ A++ A V P K ++ +KDA+E L
Sbjct: 58 NYYDKVVLFFDNDEAGQKAAKDAA---------GVLPPGKVFIGFLEDYKDASEALQAGD 108
Query: 409 PGALKEVVENAEL-YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLP 466
A++ V L Y G+ + + D I + D ++ L +L+ +
Sbjct: 109 SEAVRAVCNYDHLQYQPDGIVDAKTLLDLITTPSPPSDHD-----YPFQGLQGKLHGIRY 163
Query: 467 GELTIVTGVPNSGKSEWIDALICNI---NEHAGWKFVLCSMENKVREHARKLLEKHIKKP 523
GEL +T GKS + A+ ++ E G+ ++E +R + L+ KP
Sbjct: 164 GELVTITAGSGIGKSSFCRAIATDLLTKGERVGY----LALEESMRHTSLGLMSNACGKP 219
Query: 524 FFEANYGGSAERMTVEEF--EQGKAWLSNTFSLI----------RCENDSLPSIKWVLDL 571
+ G +R + E E W + F R E + V+ L
Sbjct: 220 L----HLGEQQRSDLTEIFDETIAKWNLHLFDGFGSYDPDHIYNRIEYMAAGLDTKVIFL 275
Query: 572 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR--FAQHHACHVWFVAH 629
++L G+ G D +R + T T ++ ++V+R A CH
Sbjct: 276 DHLSILLSGLEG---------DERRMIDTTMT----KLRSLVERTGIALFLVCHT--TTP 320
Query: 630 PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVG 689
P + G L + GS D+ VI RD ++G +R VR ++N+ G
Sbjct: 321 PNGQSHEEGGRVQLRSLRGSRSVGQLSDS--VIALERDQQSGS-ERDSTTVRVLKNRYSG 377
Query: 690 TIGEA 694
+GEA
Sbjct: 378 EVGEA 382
>gi|266625053|ref|ZP_06117988.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
gi|288863056|gb|EFC95354.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
Length = 680
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 103/225 (45%), Gaps = 22/225 (9%)
Query: 447 DEFGISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505
+EF I TG ++E + + G ++ ++G+ +GKS I L E G++ L S E
Sbjct: 381 EEF-IKTGIDTIDEKMRGLKKGFVSCLSGLRAAGKSSVISQLTIEAAEQ-GYRTALFSGE 438
Query: 506 NKVREHARKLL-----EKHIKKPFFEANYG-GSAERMTVEEFEQGKAWLSNTFSLIRCEN 559
K + + LL ++++ + ++ Y S + ++ K W+ N + N
Sbjct: 439 LKPKNLLKWLLLQAAGKQYVSQTQYDYYYVVRSPYDEIISKWLDEKVWVYNNYY---GNN 495
Query: 560 DSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 619
L ++ + V H V +++D L+ + + + S + ++ +A+
Sbjct: 496 FGL-----IMTQIRKCVTEHKVDLVILDNMMALNLME-MGSDKYQQQSHFVESLEDYAKQ 549
Query: 620 HACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664
H+ FVAHPR+ ++ L D+SGS +N+ DN ++HR
Sbjct: 550 ANIHILFVAHPRKSTGFL----RLDDVSGSNDIVNRVDNAFILHR 590
>gi|170723116|ref|YP_001750804.1| DnaB domain-containing protein [Pseudomonas putida W619]
gi|169761119|gb|ACA74435.1| DnaB domain protein helicase domain protein [Pseudomonas putida
W619]
Length = 460
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 112/270 (41%), Gaps = 30/270 (11%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNIN 492
D IDA ++ T G+STG L N L + PG + +V G+P SGK+ + +I
Sbjct: 162 IDGIDARFNGTV--SRGLSTGIPDLDNILCGLRPGHMIVVAGLPGSGKTILGQQIAQHIT 219
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGG-SAERMTVEEFEQGKAW--LS 549
G ++ S+E E A + + A+ G + R+ Q W ++
Sbjct: 220 VSLGHAGLMFSLEMTKEELAARGI----------ASLGAVNLSRIDAGNTLQDDDWPKIT 269
Query: 550 NTFSLIR----CEND----SLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
+ SL+ ND ++P I+ + A+ R G+ LV+D + + SQ
Sbjct: 270 SAVSLLNRARLYANDQAGMTMPRIRSI---ARQCQKREGLDVLVVDYLTLIASES--SQN 324
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 660
V ++ T +K A+ V +A R N + P D+ S D I
Sbjct: 325 RALEVGKISTSLKNLAKELGVPVIVLAQLNRGPANRPDKRPRPSDLRDSGQIEQDADAVI 384
Query: 661 VIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 690
++HR+ D E G ++ V K R+ GT
Sbjct: 385 LVHRDPDSEEGQNGVTELIVGKCRHGKPGT 414
>gi|438000021|ref|YP_007183754.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451812950|ref|YP_007449403.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429339255|gb|AFZ83677.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451778919|gb|AGF49799.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 453
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 121/296 (40%), Gaps = 44/296 (14%)
Query: 420 ELYPIMGLFNFRDYFDEIDAYYHRTSG-DEFGISTGWRALNELYNVL-PGELTIVTGVPN 477
E+ P++ + ID YHR D G+ TG+ L+++ + L PG+L +V G P+
Sbjct: 168 EIQPLLA-----QVVERIDDLYHREGDTDITGVPTGFIDLDKITSGLQPGDLIVVAGRPS 222
Query: 478 SGKSEWIDALICNINEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
GK+ A NI E+ G + SME + A ++L GS
Sbjct: 223 MGKT----AFSMNIGEYVAIEHGLPVAIFSMEMGASQLAMRML--------------GSI 264
Query: 534 ERMTVEEFEQGKA----WLSNTFSL-----IRCENDSLPSIKWVLDLAKAAVLRH--GVR 582
++ + GK W T ++ I+ D P++ + AK L G
Sbjct: 265 SKVDQHKMRTGKLSEEDWPKITDAIQAMQDIQLYIDETPALNVIEVKAKTRRLSRQCGQL 324
Query: 583 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPP 641
GL+I Y +L TE +S++ +K A+ C + ++ R L + P
Sbjct: 325 GLIIIDYMQLMSGSGEENRATE-ISEISRSLKSLAKELDCPLIALSQLNRSLEQRQNKRP 383
Query: 642 NLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+ D+ S D + I+R+ + ++ ++ + K RN +GT+ F
Sbjct: 384 VMSDLRESGAIEQDADLILFIYRDEFYNQDSQEKGTAEIIIGKQRNGPIGTVKLTF 439
>gi|33593747|ref|NP_881391.1| replicative DNA helicase [Bordetella pertussis Tohama I]
gi|33597060|ref|NP_884703.1| replicative DNA helicase [Bordetella parapertussis 12822]
gi|33600904|ref|NP_888464.1| replicative DNA helicase [Bordetella bronchiseptica RB50]
gi|384205035|ref|YP_005590774.1| replicative DNA helicase [Bordetella pertussis CS]
gi|408414653|ref|YP_006625360.1| DNA helicase [Bordetella pertussis 18323]
gi|410420898|ref|YP_006901347.1| DNA helicase [Bordetella bronchiseptica MO149]
gi|410472469|ref|YP_006895750.1| DNA helicase [Bordetella parapertussis Bpp5]
gi|412338909|ref|YP_006967664.1| DNA helicase [Bordetella bronchiseptica 253]
gi|427815392|ref|ZP_18982456.1| DNA helicase [Bordetella bronchiseptica 1289]
gi|427819658|ref|ZP_18986721.1| DNA helicase [Bordetella bronchiseptica D445]
gi|427824869|ref|ZP_18991931.1| DNA helicase [Bordetella bronchiseptica Bbr77]
gi|33563820|emb|CAE43064.1| DNA helicase [Bordetella pertussis Tohama I]
gi|33566511|emb|CAE37767.1| DNA helicase [Bordetella parapertussis]
gi|33568504|emb|CAE32416.1| DNA helicase [Bordetella bronchiseptica RB50]
gi|332383149|gb|AEE67996.1| replicative DNA helicase [Bordetella pertussis CS]
gi|401776823|emb|CCJ62062.1| DNA helicase [Bordetella pertussis 18323]
gi|408442579|emb|CCJ49130.1| DNA helicase [Bordetella parapertussis Bpp5]
gi|408448193|emb|CCJ59874.1| DNA helicase [Bordetella bronchiseptica MO149]
gi|408768743|emb|CCJ53513.1| DNA helicase [Bordetella bronchiseptica 253]
gi|410566392|emb|CCN23953.1| DNA helicase [Bordetella bronchiseptica 1289]
gi|410570658|emb|CCN18851.1| DNA helicase [Bordetella bronchiseptica D445]
gi|410590134|emb|CCN05213.1| DNA helicase [Bordetella bronchiseptica Bbr77]
Length = 457
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 114/282 (40%), Gaps = 38/282 (13%)
Query: 434 FDEIDAYYHRTS-GDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 491
+ ID YHR S D G+ TG+ L+++ + L G+L IV G P+ GK+ + NI
Sbjct: 178 VERIDELYHRESESDVTGVPTGFADLDKMTSGLQAGDLVIVAGRPSMGKTSF----SMNI 233
Query: 492 NEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA- 546
EH G + SME + A ++L GS + GK
Sbjct: 234 GEHVAIEQGLPVAVFSMEMGAVQLAMRML--------------GSVGMLDQHRMRTGKLV 279
Query: 547 ---WLSNTFSLIRCEN-----DSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQR 596
W T ++ ++ D P++ V A+ + G GL+I Y +L
Sbjct: 280 ADDWPRVTHAVQLMQDAQVYIDETPALSSMEVRARARRLARQCGQLGLIIIDYLQLMSAN 339
Query: 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 655
+ +S++ +K A+ C + ++ R L + P + D+ S
Sbjct: 340 SAGENRATEISEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 399
Query: 656 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
D + I+R+ +P++ ++ + K RN +GT+ F
Sbjct: 400 ADVILFIYRDEVYNPDSPDKGSAEIIIGKQRNGPIGTVRLTF 441
>gi|399020806|ref|ZP_10722930.1| replicative DNA helicase [Herbaspirillum sp. CF444]
gi|398093772|gb|EJL84146.1| replicative DNA helicase [Herbaspirillum sp. CF444]
Length = 468
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 120/281 (42%), Gaps = 33/281 (11%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID Y+R ++ D G+ TG+ L+++ + L PG+L IV G P+ GK+ + + N+
Sbjct: 182 ERIDELYNRDSTSDITGVPTGFIDLDKMTSGLQPGDLIIVAGRPSMGKTAFSINIGENVA 241
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----WL 548
+G + SME + A ++L GS R+ G+ W
Sbjct: 242 IDSGLPVAVFSMEMGGAQLAMRML--------------GSVGRLDQHRLRTGRLIDEDWP 287
Query: 549 SNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNEL---DHQRPV 598
T ++ + + D P++ + ++ + G GL+I Y +L +
Sbjct: 288 RLTHAIQKMNDAQFYIDETPALSPIELRARSRRLARQCGKLGLIIIDYLQLMSGNGGGNS 347
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCD 657
+ +S++ +K A+ C V ++ R L + P + D+ S D
Sbjct: 348 GENRASEISEISRSLKGLAKELNCPVIALSQLNRALEQRPNKRPVMSDLRESGAIEQDAD 407
Query: 658 NGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
+ I+R+ +P++ ++ + K RN +G+I AFL
Sbjct: 408 VILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLAFL 448
>gi|333984426|ref|YP_004513636.1| replicative DNA helicase [Methylomonas methanica MC09]
gi|333808467|gb|AEG01137.1| replicative DNA helicase [Methylomonas methanica MC09]
Length = 464
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 112/275 (40%), Gaps = 26/275 (9%)
Query: 435 DEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINE 493
D+I+ Y + GD G STG+ L+E + L P +L IV G P+ GK+ + N+
Sbjct: 183 DKIEMLYEQ-DGDITGASTGFTDLDEKTSGLQPADLIIVAGRPSMGKTTIAMNMAENVAL 241
Query: 494 HAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE----RMT--VEEFEQGKAW 547
+G + SME A +++ + + G + R+T + + K +
Sbjct: 242 KSGMPVAVFSMEMPGEALAMRMMSSLGRIDQHKVRTGKLDDDDWPRLTSAINLLAETKLF 301
Query: 548 LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVS 607
+ +T +L E V A+ HG GL++ Y +L + +S
Sbjct: 302 IDDTPALTPTE---------VRSRARRLTREHGQLGLIVLDYLQLMQSPSSGDNRVQQIS 352
Query: 608 QMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-- 664
+ +K A+ V ++ R L + P + D+ S D I ++R
Sbjct: 353 DISRGLKALAKEMNVPVIALSQLNRNLEQRPNKRPVMSDLRESGAIEQDADLIIFVYRDE 412
Query: 665 --NRD-PEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
N D P+ G +V + K RN +GT+ FL
Sbjct: 413 VYNEDSPDKGI---AEVIIGKQRNGPLGTVRLTFL 444
>gi|317507605|ref|ZP_07965318.1| replicative DNA helicase [Segniliparus rugosus ATCC BAA-974]
gi|316254082|gb|EFV13439.1| replicative DNA helicase [Segniliparus rugosus ATCC BAA-974]
Length = 465
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 108/276 (39%), Gaps = 38/276 (13%)
Query: 420 ELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNS 478
E+ P+ GL DE+D+ R G G+ TG+ L+ + N PG++ IV P
Sbjct: 180 EVVPLEGLLQ--STMDELDSIATR-GGISLGVPTGFVDLDRVTNGFHPGQMVIVAARPGV 236
Query: 479 GKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE-RMT 537
GKS + + AG L S+E E KLL SAE R+
Sbjct: 237 GKSTLALDFLRACSVQAGLTSALFSLEMSKMEIVMKLL---------------SAEARIR 281
Query: 538 VEEFEQGK------AWLSNTFSLIRCEN---DSLPSIKWVLDLAKAAVL--RHGVRGLVI 586
+ + GK A L+ S I D P++ + AKA L RH ++ +V+
Sbjct: 282 LADMRSGKLKDDDWARLARRMSEISEAPIFIDDSPNLTMMEIRAKARRLKQRHDLKLVVV 341
Query: 587 DPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYD 645
D + + V + E VS+ +K A+ V ++ R + P + D
Sbjct: 342 DYLQLMTSGKKVESRQQE-VSEFSRQLKLLAKELEVPVIALSQLNRGPEQRTDKRPQVSD 400
Query: 646 ISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRV 676
+ S D I++HR DP G D +
Sbjct: 401 LRESGSLEQDADMVILVHRPDAFEPDDPRGGEADLI 436
>gi|451812224|ref|YP_007448678.1| replicative DNA helicase [Candidatus Kinetoplastibacterium galatii
TCC219]
gi|451778126|gb|AGF49074.1| replicative DNA helicase [Candidatus Kinetoplastibacterium galatii
TCC219]
Length = 453
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 121/296 (40%), Gaps = 44/296 (14%)
Query: 420 ELYPIMGLFNFRDYFDEIDAYYHRTSG-DEFGISTGWRALNELYNVL-PGELTIVTGVPN 477
E+ P++ + +D YHR D G+ TG+ L+++ + L PGEL +V G P+
Sbjct: 168 EIQPLLA-----QVVERMDELYHREGDTDITGVPTGFIDLDKMTSGLQPGELIVVAGRPS 222
Query: 478 SGKSEWIDALICNINEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
GK+ A NI E+ G + SME + A ++L GS
Sbjct: 223 MGKT----AFSMNIGEYVAIEHGLPVAVFSMEMGATQLAMRML--------------GSI 264
Query: 534 ERMTVEEFEQGKA----WLSNTFSL-----IRCENDSLPSIKWVLDLAKAAVLRH--GVR 582
++ + GK W T ++ I+ D P++ + AK L G
Sbjct: 265 SKVDQHKMRTGKLSEADWPKITDAIQAMQDIQLYIDETPALNVIEVKAKTRRLSRQCGQL 324
Query: 583 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPP 641
GL+I Y +L TE +S++ +K A+ C + ++ R L + P
Sbjct: 325 GLIIIDYMQLMSGSGEENRATE-ISEISRSLKSLAKELNCPLIALSQLNRSLEQRQNKRP 383
Query: 642 NLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+ D+ S D + I+R+ + ++ ++ + K RN +GT+ F
Sbjct: 384 VMSDLRESGAIEQDADLILFIYRDEFYNQDSQEKGTAEIIIGKQRNGPIGTVKLTF 439
>gi|404493638|ref|YP_006717744.1| replicative DNA helicase [Pelobacter carbinolicus DSM 2380]
gi|77545674|gb|ABA89236.1| replicative DNA helicase [Pelobacter carbinolicus DSM 2380]
Length = 456
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 118/284 (41%), Gaps = 25/284 (8%)
Query: 430 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALI 488
+D I+ YHR G+STG+ L+E+ L P +L IV G P+ GK+ ++ L+
Sbjct: 165 MKDTIQIIEDLYHRKEL-VTGVSTGYTVLDEMTAGLQPSDLVIVAGRPSMGKTAFVLNLV 223
Query: 489 CNINEHAGWKF--VLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA 546
N A V+ S+E ++LL + G E + +G +
Sbjct: 224 ENAAVRASEPVPTVVFSLEMSKESLVQRLLCSLARVDAGRLRTGNLVES-DWPKLIEGAS 282
Query: 547 WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETE 604
LS I D P+I + AKA L+ H + G+V+ Y +L Q S++ +
Sbjct: 283 KLSEAPVFI----DDTPAITVMELRAKARRLKAEHNL-GMVVVDYLQL-MQGHNSESRQQ 336
Query: 605 YVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 663
+S++ +K A+ V ++ R L N + P + D+ S D + I+
Sbjct: 337 EISEISRSLKALAKEINVPVLALSQLNRSLENRTDKRPIMADLRESGAIEQDADVIMFIY 396
Query: 664 R-----------NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
R R E G ++ + K RN +GT+ FL
Sbjct: 397 REAVYCDDCRSKERTCEKGHDKDAEIIIGKQRNGPIGTVHLTFL 440
>gi|410728212|ref|ZP_11366393.1| replicative DNA helicase [Clostridium sp. Maddingley MBC34-26]
gi|410597151|gb|EKQ51784.1| replicative DNA helicase [Clostridium sp. Maddingley MBC34-26]
Length = 431
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 113/247 (45%), Gaps = 28/247 (11%)
Query: 451 ISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 509
+ TG+R + N++ ++ G L ++TG +GKS ++ + + G+K + S E
Sbjct: 160 VRTGFRDIDNKILGIVTGSLVVITGYNGNGKSTLLNQMCIAESLSQGYKVFVYSPE-LTN 218
Query: 510 EHARKLLEKHI--KKPFFEANYGGSAER-------MTVEEFEQGKAWLSNTFSLIRCEND 560
+ + + I + F E + G + M ++++ + K + I +++
Sbjct: 219 SNFKSCVYSTIANSEDFDEDEFCGEKYKKLSDRGNMLIDQWIKDKLY-------IYSDSN 271
Query: 561 SLPSIKWVL-DLAKAAVLRH-GVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRF 616
S S K +L D+ K A +H VR +ID ++D + + EY++Q + +K+F
Sbjct: 272 STSSEKQLLRDMDKLA--KHKDVRVFIIDNLMKIDLE---GSYKNEYLAQKTFVNQLKQF 326
Query: 617 AQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRV 676
A + V+ VAHP++ + + +DI+G+ N D I R + +
Sbjct: 327 ATRYNALVYLVAHPKKPQER-SKVISKFDIAGTGDITNMADYVFSISRITSKDRKKNSKY 385
Query: 677 QVCVRKV 683
+ C+ K+
Sbjct: 386 RDCIIKM 392
>gi|226315503|ref|YP_002775399.1| replicative DNA helicase [Brevibacillus brevis NBRC 100599]
gi|226098453|dbj|BAH46895.1| replicative DNA helicase [Brevibacillus brevis NBRC 100599]
Length = 449
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 115/265 (43%), Gaps = 16/265 (6%)
Query: 440 YYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWK 498
+ + GD GISTG+ L+++ L +L I+ P+ GK+ + L N+ AG
Sbjct: 175 FLSQRRGDITGISTGYTDLDKMTAGLQRSDLIILAARPSVGKTAFALNLAQNVAARAGET 234
Query: 499 FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERM-TVEEFEQGKAWLS-NTFSLIR 556
+ S+E A +L+++ I E N S R T+EE + K ++ T +
Sbjct: 235 VAIFSLEM----GASQLVQRMI---CAEGNLDASRMRSGTLEEDDWQKLTMAIGTLAKAP 287
Query: 557 CENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
D P + AK L+ G+ GL++ Y +L H R + VS++ +K
Sbjct: 288 IYIDDSPGVTVQDIRAKCRRLQTERGL-GLILIDYLQLIHGRGKGDNRQQEVSEISRTLK 346
Query: 615 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 671
A+ V ++ R + + P + DI S D ++R+ D E+
Sbjct: 347 GIARELNVPVIALSQLSRGVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYDKESE 406
Query: 672 PIDRVQVCVRKVRNKVVGTIGEAFL 696
+ ++V + K RN GT+ AFL
Sbjct: 407 NKNVIEVIIAKQRNGPTGTVELAFL 431
>gi|373456225|ref|ZP_09547992.1| replicative DNA helicase [Caldithrix abyssi DSM 13497]
gi|371717889|gb|EHO39660.1| replicative DNA helicase [Caldithrix abyssi DSM 13497]
Length = 476
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 116/280 (41%), Gaps = 29/280 (10%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
F+ ID YH + G+ +G+ L++L L P +L I+ G P+ GK+ + L N
Sbjct: 187 FERIDKLYHSSVSGVTGVPSGYTKLDQLTAGLQPSDLVILAGRPSMGKTAFALNLARNAA 246
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 552
G + S+E A +LL K G + T EE ++ S
Sbjct: 247 IEHGIPVGIFSLEMSSDSLAMRLLCTEAKVNIMSVRTG----KFTKEEMDRLTEHASKLM 302
Query: 553 SLIRCENDSLPSIKWVLDL-AKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQM 609
+ +DS P++ VL+L AKA L+ H ++ LVID ++ + Q E ++S+
Sbjct: 303 TAPIFIDDS-PAMN-VLELRAKARRLKAEHNIQLLVIDYLQLMEGKGDNRQQEITHISRS 360
Query: 610 LTMVKRFAQHHACHVWFVAHPRQLHNWV-----GEPPNLYDISGSAHFINKCDNGIVIHR 664
L K A+ V ++ QL V + P L D+ S D + ++R
Sbjct: 361 L---KGIAKELDVPVLALS---QLSRAVETRDKSKKPQLSDLRESGSIEQDADVVMFVYR 414
Query: 665 N--------RDPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
D + ++ + K RN GT+ +FL
Sbjct: 415 PEYYGIMEFEDTGQSTHNMCEIIIGKQRNGPTGTVRLSFL 454
>gi|227502167|ref|ZP_03932216.1| replicative DNA helicase [Corynebacterium accolens ATCC 49725]
gi|306834724|ref|ZP_07467791.1| replicative DNA helicase DnaB [Corynebacterium accolens ATCC 49726]
gi|227076991|gb|EEI14954.1| replicative DNA helicase [Corynebacterium accolens ATCC 49725]
gi|304569395|gb|EFM44893.1| replicative DNA helicase DnaB [Corynebacterium accolens ATCC 49726]
Length = 477
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 119/287 (41%), Gaps = 35/287 (12%)
Query: 417 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGV 475
+ AE Y ++G DE+ A + G E G+ TG+ L++L N L G++ IV
Sbjct: 188 KTAEDYRVLGDL-IDPTIDEL-AALQQAGGVELGVPTGFIDLDKLTNGLHAGQMIIVAAR 245
Query: 476 PNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 535
P GKS I + + G V+ S+E E +LL + + GG
Sbjct: 246 PGVGKSTLAMDFIRSCSLQHGKSSVIFSLEMSASEIVMRLLSAESEVKLTDMRSGG---- 301
Query: 536 MTVEEFEQGKAWLSNTFSLIRCEN---DSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYN 590
++ E++ A + +T + I+ D P++ + +KA L+ HG+ +V+D
Sbjct: 302 VSTEDW----AKIDDTLNRIQDAPLFIDDSPNLTMMEIRSKARRLKQQHGLDLIVLDYLQ 357
Query: 591 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGS 649
+ + V + E VS+ +K A+ V ++ R + P L D+ S
Sbjct: 358 LMSSGKKVESRQQE-VSEFSRQLKLLAKELEVPVIAISQLNRGPEARNDKKPQLADLRES 416
Query: 650 AHFINKCDNGIVIHR----NRDPE-------------AGPIDRVQVC 679
D ++++R +RD E GPID VQV
Sbjct: 417 GSLEQDADMVMLLYRPDSQDRDNERAGEADIILAKHRGGPIDTVQVA 463
>gi|332853410|ref|ZP_08434729.1| replicative DNA helicase [Acinetobacter baumannii 6013150]
gi|332870608|ref|ZP_08439350.1| replicative DNA helicase [Acinetobacter baumannii 6013113]
gi|417554144|ref|ZP_12205213.1| replicative DNA helicase [Acinetobacter baumannii Naval-81]
gi|417562663|ref|ZP_12213542.1| replicative DNA helicase [Acinetobacter baumannii OIFC137]
gi|421198867|ref|ZP_15656032.1| replicative DNA helicase [Acinetobacter baumannii OIFC109]
gi|421455842|ref|ZP_15905186.1| replicative DNA helicase [Acinetobacter baumannii IS-123]
gi|421634563|ref|ZP_16075179.1| replicative DNA helicase [Acinetobacter baumannii Naval-13]
gi|421802671|ref|ZP_16238618.1| replicative DNA helicase [Acinetobacter baumannii WC-A-694]
gi|332728616|gb|EGJ59984.1| replicative DNA helicase [Acinetobacter baumannii 6013150]
gi|332732168|gb|EGJ63437.1| replicative DNA helicase [Acinetobacter baumannii 6013113]
gi|395525245|gb|EJG13334.1| replicative DNA helicase [Acinetobacter baumannii OIFC137]
gi|395565763|gb|EJG27410.1| replicative DNA helicase [Acinetobacter baumannii OIFC109]
gi|400212080|gb|EJO43042.1| replicative DNA helicase [Acinetobacter baumannii IS-123]
gi|400390561|gb|EJP57608.1| replicative DNA helicase [Acinetobacter baumannii Naval-81]
gi|408704625|gb|EKL49990.1| replicative DNA helicase [Acinetobacter baumannii Naval-13]
gi|410414511|gb|EKP66312.1| replicative DNA helicase [Acinetobacter baumannii WC-A-694]
Length = 451
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 109/254 (42%), Gaps = 23/254 (9%)
Query: 450 GISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508
GI TG+ L N+L + +L I+ P+ GK+ ++ +++ + G + S E
Sbjct: 183 GIKTGFFELDNKLDCIDQTDLVIIGARPSMGKTTLAQNILSDVSVNQGEPALFMSGEMNK 242
Query: 509 REHARKLLE-------KHIKKPFFEANYGGSAER-MTVEEFEQGKAWLSNTFSLIRCEND 560
+ +L+ K I+ F++ G R MT+ + NT I +
Sbjct: 243 EQIMERLISGIGQIELKKIRSGRFQSEDAGLIHRAMTI---------IGNTK--IEINDQ 291
Query: 561 SLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHH 620
S PS+ + A+ V ++G GL++ Y ++ + T+ + + +K+ A+
Sbjct: 292 SAPSLSDIRREARKMVRKYGKVGLIMVDYLQIMTPPQRTGNPTQEMGDISRGLKKLAKDF 351
Query: 621 ACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQ 677
C V ++ R L N + P + D+ S D + I+R+ + E+ +
Sbjct: 352 NCPVVALSQLNRSLENRPNKRPIMSDLRDSGQIEQDADVILFIYRDEVYNKESKDAGIAE 411
Query: 678 VCVRKVRNKVVGTI 691
+ V K RN VGT+
Sbjct: 412 IIVGKARNGTVGTV 425
>gi|395763379|ref|ZP_10444048.1| replicative DNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 461
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 116/287 (40%), Gaps = 30/287 (10%)
Query: 435 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID Y R + E G+ TG+ L+ + + L PG+L IV G P+ GK+ + + N+
Sbjct: 179 ERIDELYSRDNQSEITGVPTGFIDLDRMTSGLQPGDLVIVAGRPSMGKTAFSVNIGENVA 238
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----WL 548
+G + SME + A ++L GS ++ G+ W
Sbjct: 239 IDSGLPVAVFSMEMGGAQLAMRML--------------GSVGQLDQHRLRTGRLNDEDWP 284
Query: 549 SNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 285 RLTNAIQKMNDAQLYIDETPALNSIELRARSRRLSRQCGKLGLIIVDYLQLMSANTPGDN 344
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 660
+S++ +K A+ C V ++ R L + P + D+ S D +
Sbjct: 345 RASEISEISRGLKGLAKELGCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVIL 404
Query: 661 VIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
I+R+ +P++ ++ + K RN +G+I F+ G Y
Sbjct: 405 FIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLTFMGQYTKFGNY 451
>gi|428314852|ref|YP_007118870.1| replicative DNA helicase [Oscillatoria nigro-viridis PCC 7112]
gi|428244887|gb|AFZ10671.1| replicative DNA helicase [Oscillatoria nigro-viridis PCC 7112]
Length = 451
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 111/274 (40%), Gaps = 21/274 (7%)
Query: 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICN 490
Y DEI+ T+ GISTG+ L++L GEL ++ G P SGK+ AL N
Sbjct: 174 YLDEIEEQRLETANYCPGISTGFYDLDDLLGGGFYRGELIVIGGRPGSGKTALACALGYN 233
Query: 491 INEHA-GWKFVLCSMENKVREHARKL--LEKHIK-KPFFEANYGGSAERM--TVEEFEQG 544
I + ++ SME R+ A +L LE + K + N G E + + +
Sbjct: 234 IASLPRNGRVLMFSMEMPGRDLAARLMALESGVSVKDIRQVNLAGKYEVLASALGKVSDA 293
Query: 545 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 604
W+ + PS + + V G GLVI Y +L +
Sbjct: 294 DFWIDESLE---------PSPLEIRSRVREFVCERGPLGLVIVDYLQL-MVNSADENFVN 343
Query: 605 YVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 663
+S++ +K A+ V ++ R + + P+L D+ GS D + ++
Sbjct: 344 KISEITRQMKILAREVDTPVVLLSQLNRGVETRTNKRPSLSDLRGSGGIEQDADVVLGVY 403
Query: 664 RNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
R+ +P++ ++ K RN GT+ F
Sbjct: 404 RDDYYNPDSPDRGIAEIIGLKGRNSGTGTVKLLF 437
>gi|398833248|ref|ZP_10591385.1| replicative DNA helicase [Herbaspirillum sp. YR522]
gi|398221908|gb|EJN08303.1| replicative DNA helicase [Herbaspirillum sp. YR522]
Length = 481
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 120/284 (42%), Gaps = 40/284 (14%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID Y+R + D G+ TG+ L+++ + L PG+L IV G P+ GK+ A NI
Sbjct: 196 ERIDELYNRDNTSDITGVPTGFIDLDKMTSGLQPGDLIIVAGRPSMGKT----AFSINIG 251
Query: 493 E----HAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
E +G + SME + A ++L GS R+ G+
Sbjct: 252 ETVAIESGLPVAVFSMEMGGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 297
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 298 EDWPRLTHAIQKMNDAQFYIDETPALSPIELRARSRRLARQCGKLGLIIIDYLQLMSGNG 357
Query: 598 VSQTE--TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFIN 654
S +E +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 358 GSSSENRASEISEISRSLKGLAKELNCPVIALSQLNRALEQRPNKRPVMSDLRESGAIEQ 417
Query: 655 KCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
D + I+R+ +P++ ++ + K RN +G+I +FL
Sbjct: 418 DADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLSFL 461
>gi|440703533|ref|ZP_20884465.1| replicative DNA helicase [Streptomyces turgidiscabies Car8]
gi|440274915|gb|ELP63394.1| replicative DNA helicase [Streptomyces turgidiscabies Car8]
Length = 491
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 130/313 (41%), Gaps = 34/313 (10%)
Query: 406 YLGPGALKEVVENA--ELYPIMGLFNFRDYF----------DEIDAYYHRTSGDEFGIST 453
Y G + E+V +A E+Y + DY DEI+A R SG+ G+ T
Sbjct: 177 YAADGDVDEIVNSAQAEIYAVTEQRTTEDYLPLGDIMEGALDEIEAIGSR-SGEMTGVPT 235
Query: 454 GWRALNELYNVL-PGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENKVRE 510
G+ L++L N L PG++ I+ P GKS +D A C+I + V+ S+E E
Sbjct: 236 GFTDLDQLTNGLHPGQMIIIAARPAMGKSTLALDFARACSIKHN--MPSVIFSLEMGRNE 293
Query: 511 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLD 570
A +LL + G MT E++ + + + + +DS P++ +
Sbjct: 294 IAMRLLSAEARVALHHMRSG----TMTDEDWTRLARRMPDVSAAPLYIDDS-PNLSMMEI 348
Query: 571 LAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 628
AK L R ++ ++ID + S++ + VS M +K A+ V ++
Sbjct: 349 RAKCRRLKQRADLKLVIIDYLQLMQSGGKRSESRQQEVSDMSRNLKLLAKELELPVIALS 408
Query: 629 H-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVCVRK 682
R + P + D+ S D I++HR P AG D + V K
Sbjct: 409 QLNRGPEQRTDKKPMVSDLRESGSIEQDADMVILLHREDAYEKESPRAGEAD---IIVGK 465
Query: 683 VRNKVVGTIGEAF 695
RN TI AF
Sbjct: 466 HRNGPTATITVAF 478
>gi|324998554|ref|ZP_08119666.1| replicative DNA helicase [Pseudonocardia sp. P1]
Length = 470
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 131/315 (41%), Gaps = 36/315 (11%)
Query: 410 GALKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRA 457
G ++EVV+ A+ +Y + DY DEIDA + G G+ TG+
Sbjct: 161 GEVEEVVDRAQAAVYEVTERTTTEDYTVLEELLQPTMDEIDAIASQ-GGMAAGVPTGFAD 219
Query: 458 LNELYNVL-PGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENKVREHARK 514
L+ + N L PG++ +V P GKS +D A C+I G S+E E +
Sbjct: 220 LDAVTNGLHPGQMVVVAARPGLGKSTLGLDFARSCSIKN--GMTSAFFSLEMSKSEIVMR 277
Query: 515 LLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 574
LL + + G RM+ E++ + +S +DS P++ + AKA
Sbjct: 278 LLSAEARIRLADMRAG----RMSDEDWTRMARRMSEISEAPLYIDDS-PNLTLMEIRAKA 332
Query: 575 AVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PR 631
+ R+ ++ +++D + R V + E VS+ +K A+ V ++ R
Sbjct: 333 RRMKQRNDLKLIILDYLQLMTSGRKVESRQQE-VSEFSRQIKLIAKELEVPVVAMSQLNR 391
Query: 632 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVCVRKVRNK 686
+ P L D+ S D +++HR DP AG D + + K RN
Sbjct: 392 GPEQRTDKRPMLSDLRESGSIEQDADMVVLLHRPDAFEQDDPRAGEAD---LILAKHRNG 448
Query: 687 VVGTIGEAF-LSYNR 700
TI A L Y+R
Sbjct: 449 PTTTITVAHQLHYSR 463
>gi|451823083|ref|YP_007459357.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
gi|451775883|gb|AGF46924.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
Length = 456
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 120/296 (40%), Gaps = 44/296 (14%)
Query: 420 ELYPIMGLFNFRDYFDEIDAYYHRTS-GDEFGISTGWRALNELYNVL-PGELTIVTGVPN 477
E+ P++ + ID Y R S D G+ TG+ L+++ + L PG+L +V G P+
Sbjct: 168 EIQPLLA-----QVVERIDELYSRDSDSDVTGVPTGFIDLDKMTSGLQPGDLIVVAGRPS 222
Query: 478 SGKSEWIDALICNINEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
GK+ A NI E G + SME + A ++L GS
Sbjct: 223 MGKT----AFSMNIGEFVSIEHGLPVAIFSMEMSATQLAMRML--------------GSI 264
Query: 534 ERMTVEEFEQGKA----W--LSNTFSLIRCEN---DSLPSIKWVLDLAKAAVLRH--GVR 582
+ GK W ++N +++ D P++ + AK L G
Sbjct: 265 GIIDQHRIRTGKLTEEDWPKITNAIQVMQDAQLYIDETPALNVMEVRAKTRRLSRQCGQL 324
Query: 583 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPP 641
GLVI Y +L TE +S++ +K A+ C + ++ R L + P
Sbjct: 325 GLVIIDYMQLMSGSGEENRATE-ISEISRSLKSLAKELNCPLIALSQLNRSLEQRQNKRP 383
Query: 642 NLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+ D+ S D + I+R+ +P++ ++ + K RN +GTI F
Sbjct: 384 VMSDLRESGAIEQDADLILFIYRDEIYNPDSQDKGIAEIIIGKQRNGPIGTIRLTF 439
>gi|389872685|ref|YP_006380104.1| replicative DNA helicase [Advenella kashmirensis WT001]
gi|388537934|gb|AFK63122.1| replicative DNA helicase [Advenella kashmirensis WT001]
Length = 460
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 116/285 (40%), Gaps = 39/285 (13%)
Query: 432 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICN 490
D I+ GD GI TG+ L+ L PG+L IV G P GK+ + N
Sbjct: 174 DVLKRIEELGDGNHGDVSGIPTGFVDLDRKTTGLHPGQLIIVAGRPAMGKTSF----SMN 229
Query: 491 INEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA 546
I EH G + SME + + A +++ GS ++ + G+
Sbjct: 230 IAEHVAIDEGLPVAVFSMEMEATQLAARMI--------------GSIGKLDQQRMRTGRL 275
Query: 547 W------LSNTFSLIRCEN---DSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQ 595
L++ L++ D P++ ++ ++A L+ G GL++ Y +L
Sbjct: 276 LDEDWPKLTHAMQLLQEAQIYIDESPALSPLVLRSRARRLKRKCGKLGLIVVDYLQLMSG 335
Query: 596 RPVSQTE--TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHF 652
+S+ + T +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 336 NALSKNDNRTAEISEISRSLKTLAKEMECPVIALSQLNRGLEQRTNKRPIMSDLRESGAI 395
Query: 653 INKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
D + I+R+ P++ +V + K R +GT+ F
Sbjct: 396 EQDADLILFIYRDEVYHPDSQDKGSAEVIIGKQRAGPIGTVRLTF 440
>gi|52840975|ref|YP_094774.1| replicative DNA helicase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|54296764|ref|YP_123133.1| replicative DNA helicase [Legionella pneumophila str. Paris]
gi|148360609|ref|YP_001251816.1| replicative DNA helicase [Legionella pneumophila str. Corby]
gi|296106325|ref|YP_003618025.1| replicative DNA helicase [Legionella pneumophila 2300/99 Alcoy]
gi|378776680|ref|YP_005185117.1| replicative DNA helicase [Legionella pneumophila subsp. pneumophila
ATCC 43290]
gi|397663305|ref|YP_006504843.1| replicative DNA helicase [Legionella pneumophila subsp.
pneumophila]
gi|52628086|gb|AAU26827.1| replicative DNA helicase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|53750549|emb|CAH11951.1| Replicative DNA helicase [Legionella pneumophila str. Paris]
gi|148282382|gb|ABQ56470.1| replicative DNA helicase [Legionella pneumophila str. Corby]
gi|295648226|gb|ADG24073.1| replicative DNA helicase [Legionella pneumophila 2300/99 Alcoy]
gi|307609534|emb|CBW99032.1| replicative DNA helicase [Legionella pneumophila 130b]
gi|364507494|gb|AEW51018.1| replicative DNA helicase [Legionella pneumophila subsp. pneumophila
ATCC 43290]
gi|395126716|emb|CCD04899.1| replicative DNA helicase [Legionella pneumophila subsp.
pneumophila]
Length = 460
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 122/288 (42%), Gaps = 40/288 (13%)
Query: 434 FDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 491
++IDA YH +GD G++TG L+E+ + L P +L IV G P+ GK+ L+ N+
Sbjct: 179 VEKIDALYH--NGDAITGLATGLSDLDEMTSGLQPSDLIIVAGRPSMGKT----TLVMNM 232
Query: 492 NEHAGWK----FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE----RMT--VEEF 541
EHA K ++ SME A +++ + G + R+T V
Sbjct: 233 AEHAAIKAGKPVLVFSMEMPADSLAMRMMSSLGRIDQHRIRTGKLDDNDWPRVTSAVHML 292
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV--S 599
+ ++ +T +L E + A+ HG GL++ Y +L + P +
Sbjct: 293 SEAPLFIDDTPALSPGEMRA---------RARRLAKEHGSLGLIVVDYLQL-MKVPGFNA 342
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDN 658
T +S++ +K A+ V ++ R L + P + D+ S D
Sbjct: 343 DNRTAEISEISRSLKSLAKELQVPVIALSQLNRSLEQRADKRPVMSDLRESGAIEQDADL 402
Query: 659 GIVIHR----NRD-PEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 700
I+R N D P+ G ++ V K RN +G + AFL Y R
Sbjct: 403 ICFIYRDEVYNEDSPDKG---TAEIIVAKQRNGPIGKVRVAFLGKYTR 447
>gi|406036911|ref|ZP_11044275.1| replicative DNA helicase [Acinetobacter parvus DSM 16617 = CIP
108168]
Length = 481
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 111/265 (41%), Gaps = 22/265 (8%)
Query: 443 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G+ G+STG+ L N+ Y + G+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KMDGNITGLSTGFLELDNKTYGMQAGDLIIVAARPSMGKTTFAMNLVESVLFNSNLPALV 264
Query: 502 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE--- 558
SME A +L+ ++YG + G W T ++++ +
Sbjct: 265 YSMEMPADSIAMRLI----------SSYGKVHQGHLRSGKLDGDEWSKVTGTILQLQEKH 314
Query: 559 -----NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 613
+ +LP + + A + G G ++ Y +L + +S++ +
Sbjct: 315 LYIDDSSALPPTEVRARARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSL 374
Query: 614 KRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEA 670
K A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 375 KALAKEMQCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKES 434
Query: 671 GPIDRVQVCVRKVRNKVVGTIGEAF 695
++ + K RN +GT+ AF
Sbjct: 435 KEAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|54293721|ref|YP_126136.1| replicative DNA helicase [Legionella pneumophila str. Lens]
gi|53753553|emb|CAH15008.1| Replicative DNA helicase [Legionella pneumophila str. Lens]
Length = 460
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 122/288 (42%), Gaps = 40/288 (13%)
Query: 434 FDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 491
++IDA YH +GD G++TG L+E+ + L P +L IV G P+ GK+ L+ N+
Sbjct: 179 VEKIDALYH--NGDAITGLATGLSDLDEMTSGLQPSDLIIVAGRPSMGKT----TLVMNM 232
Query: 492 NEHAGWK----FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE----RMT--VEEF 541
EHA K ++ SME A +++ + G + R+T V
Sbjct: 233 AEHAAIKAGKPVLVFSMEMPADSLAMRMMSSLGRIDQHRIRTGKLDDNDWPRVTSAVHML 292
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV--S 599
+ ++ +T +L E + A+ HG GL++ Y +L + P +
Sbjct: 293 SEAPLFIDDTPALSPGEMRA---------RARRLAKEHGSLGLIVVDYLQL-MKVPGFNA 342
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDN 658
T +S++ +K A+ V ++ R L + P + D+ S D
Sbjct: 343 DNRTAEISEISRSLKSLAKELQVPVIALSQLNRSLEQRADKRPVMSDLRESGAIEQDADL 402
Query: 659 GIVIHR----NRD-PEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 700
I+R N D P+ G ++ V K RN +G + AFL Y R
Sbjct: 403 ICFIYRDEVYNEDSPDKG---TAEIIVAKQRNGPIGKVRVAFLGKYTR 447
>gi|319651066|ref|ZP_08005200.1| replicative DNA helicase [Bacillus sp. 2_A_57_CT2]
gi|317397236|gb|EFV77940.1| replicative DNA helicase [Bacillus sp. 2_A_57_CT2]
Length = 454
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 80/353 (22%), Positives = 143/353 (40%), Gaps = 24/353 (6%)
Query: 363 GDPPGQALAEELARRVGRERCWR--VRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 420
G P A E A+ V + R +R D + +EV + LG A K ++E A+
Sbjct: 94 GSVPTAANIEYYAKIVEEKSLLRRLIRTATGIAQDGYTREDEVEVLLGE-AEKNIMEVAQ 152
Query: 421 LYPIMGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGV 475
N +D +D I+ ++R GD GI+TG+ L+ + +L IV
Sbjct: 153 RKNAGAFHNIKDVLVRTYDNIEEMHNR-KGDITGIATGFTELDRMTAGFQRNDLIIVGAR 211
Query: 476 PNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLL--EKHIKKPFFEANYGGSA 533
P+ GK+ + + N+ G + S+E + ++L E +I GS
Sbjct: 212 PSVGKTAFALNIAQNVATKTGENVAIFSLEMGAEQLVMRILCAEGNIDAQRLRT---GSL 268
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNE 591
+ LSN I D P ++ +K L+ HG+ ++ID
Sbjct: 269 TDEDWGKLTMAMGSLSNAGIFI----DDTPGVRITDIRSKCRRLKQEHGLGMILIDYLQL 324
Query: 592 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSA 650
+ + + VS++ +K+ A+ V ++ R + + P + DI S
Sbjct: 325 ILGSGRSGENRQQEVSEISRSLKQLARELQVPVIALSQLSRGVEQRQDKRPMMSDIRESG 384
Query: 651 HFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL-SYNR 700
D ++R+ D E+ + +++ + K RN VGT+ AF+ YN+
Sbjct: 385 SIEQDADIVAFLYRDDYYDKESEDKNIIEIIIAKQRNGPVGTVQLAFVKEYNK 437
>gi|115378658|ref|ZP_01465808.1| replicative DNA helicase [Stigmatella aurantiaca DW4/3-1]
gi|310823081|ref|YP_003955439.1| replicative DNA helicase [Stigmatella aurantiaca DW4/3-1]
gi|115364324|gb|EAU63409.1| replicative DNA helicase [Stigmatella aurantiaca DW4/3-1]
gi|309396153|gb|ADO73612.1| Replicative DNA helicase [Stigmatella aurantiaca DW4/3-1]
Length = 459
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 93/401 (23%), Positives = 159/401 (39%), Gaps = 42/401 (10%)
Query: 321 DGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRII-LATDGDPPGQALAEELARR-- 377
DG+ SV + E + YL +++ LA++ + ++++ RR
Sbjct: 62 DGSQRSVDHLTLSEELKVLGQLAAVGGPAYLMTLDQVVPLASNAVQYAKIVSDQAIRRRL 121
Query: 378 --VGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFD 435
VGRE + + DV+ D M+L L E +L P+ L +
Sbjct: 122 AVVGRE-ILEMASQETGDVEVVVDEAARKMFL----LAEKRREGDLLPVSDLME--QTLN 174
Query: 436 EIDAYYHRTSGDEFGISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEH 494
+D +SG G+STG+ L+ +L + GEL I+ P GK+ +L NI H
Sbjct: 175 LLDKMKASSSG-VTGLSTGYVDLDMQLTGLHAGELIILAARPGIGKT----SLAMNIAMH 229
Query: 495 AGWK-----FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS 549
A + + S+E + +LL + + GG + E+F++ L
Sbjct: 230 AALEEEPKAVAIFSLEMPADQLLMRLLASSARVDMKKLR-GGRLTQHDEEKFQEMAGKLY 288
Query: 550 NTFSLIRCENDSLPSIKWVLDL-AKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYV 606
N I P DL AKA L+ L++ Y +L HQ+ ++ V
Sbjct: 289 NAPIYIDDSGGLSP-----FDLRAKARRLKQKDSRLSLIVIDYLQLMHQKGKVESRQLEV 343
Query: 607 SQMLTMVKRFAQHHACHVWFVAHP-RQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665
S++ +K+ A+ + ++ R++ G P L D+ S D + IHR
Sbjct: 344 SEISRGLKQLAKELEVPIIALSQLNRKVEERKGGKPMLSDLRESGSIEQDADVVMFIHRE 403
Query: 666 R---------DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 697
+ + V++ + K RN VG+I FLS
Sbjct: 404 EQEEGGDGGGGGRSSTVIPVELIIAKQRNGPVGSIDLVFLS 444
>gi|108756869|ref|YP_633238.1| replicative DNA helicase [Myxococcus xanthus DK 1622]
gi|108460749|gb|ABF85934.1| replicative DNA helicase [Myxococcus xanthus DK 1622]
Length = 456
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 123/310 (39%), Gaps = 35/310 (11%)
Query: 412 LKEVVENAELYPIMGLFNFR-DYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLPGEL 469
L E +L P+ L D D++ A +G +STG+ L N+L + GEL
Sbjct: 153 LAEKKREGDLRPVSELMEHTLDLLDKMKAAATGITG----LSTGYIDLDNQLTGLHAGEL 208
Query: 470 TIVTGVPNSGKSEWIDALICNINEHAGWK----FVLCSMENKVREHARKLLEKHIKKPFF 525
I+ P GK+ + NI HA K + S+E + +LL +
Sbjct: 209 IILAARPGIGKTSFA----MNIAVHAALKENKAVGIFSLEMPADQLLMRLLASTARVDMK 264
Query: 526 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL---AKAAVLRHGVR 582
+ GG E+F++ L N I P DL A+ R
Sbjct: 265 KLR-GGRLTPHDEEKFQEMAGALYNAPIYIDDSGGLSP-----FDLRAKARRVKQRDPRL 318
Query: 583 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPP 641
L++ Y +L HQ+ ++ V+++ +K+ A+ + ++ R++ + P
Sbjct: 319 SLIVIDYLQLMHQKGKVESRQLEVAEISRALKQLAKELEVPIIALSQLSRKVEDRKDGKP 378
Query: 642 NLYDISGSAHFINKCDNGIVIHRNRDPEAGP----------IDRVQVCVRKVRNKVVGTI 691
L D+ S D + IHR EAGP + V++ + K RN +G+I
Sbjct: 379 LLSDLRESGSIEQDADVVMFIHRETSDEAGPDGQPAQQSNTVIPVELIIAKQRNGPIGSI 438
Query: 692 GEAFLS-YNR 700
FL+ Y R
Sbjct: 439 DLVFLAEYTR 448
>gi|397666418|ref|YP_006507955.1| replicative DNA helicase [Legionella pneumophila subsp.
pneumophila]
gi|395129829|emb|CCD08062.1| replicative DNA helicase [Legionella pneumophila subsp.
pneumophila]
Length = 460
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 122/288 (42%), Gaps = 40/288 (13%)
Query: 434 FDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 491
++IDA YH +GD G++TG L+E+ + L P +L IV G P+ GK+ L+ N+
Sbjct: 179 VEKIDALYH--NGDAITGLATGLSDLDEMTSGLQPSDLIIVAGRPSMGKT----TLVMNM 232
Query: 492 NEHAGWK----FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE----RMT--VEEF 541
EHA K ++ SME A +++ + G + R+T V
Sbjct: 233 AEHAAIKAGKPVLVFSMEMPADSLAMRMMSSLGRIDQHRIRTGKLDDNDWPRVTSAVHML 292
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV--S 599
+ ++ +T +L E + A+ HG GL++ Y +L + P +
Sbjct: 293 SEAPLFIDDTPALSPGEMRA---------RARRLAKEHGSLGLIVVDYLQL-MKVPGFNA 342
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDN 658
T +S++ +K A+ V ++ R L + P + D+ S D
Sbjct: 343 DNRTAEISEISRSLKSLAKELQVPVIALSQLNRSLEQRADKRPVMSDLRESGAIEQDADL 402
Query: 659 GIVIHR----NRD-PEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 700
I+R N D P+ G ++ V K RN +G + AFL Y R
Sbjct: 403 ICFIYRDEVYNEDSPDKG---TAEIIVAKQRNGPIGKVRVAFLGKYTR 447
>gi|254516847|ref|ZP_05128905.1| replicative DNA helicase [gamma proteobacterium NOR5-3]
gi|219674352|gb|EED30720.1| replicative DNA helicase [gamma proteobacterium NOR5-3]
Length = 344
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 113/271 (41%), Gaps = 23/271 (8%)
Query: 444 TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC 502
+ GD G++TG+ L+++ + L +L IV G P+ GK+ + L+ N H ++
Sbjct: 74 SGGDITGLTTGYVDLDKMTSGLQKSDLVIVAGRPSMGKTAFAMNLVENAVLHQPDPVLVF 133
Query: 503 SMENKVREHARKLLEK--HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEND 560
SME +LL I + G ++ E L NT LI D
Sbjct: 134 SMEMPAEALMMRLLSSIGRIDQTLVRT---GRLDQAGWESLSHAVGKLKNTGLLI----D 186
Query: 561 SLPSIKWVLDLAKAAVLRH---GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFA 617
P++ ++A ++ G+ ++ID Y +L S+ T +S++ +K A
Sbjct: 187 DTPALTPTEVRSRARRVKREYGGIAMIMID-YMQLMQVAGASEGRTAEISEISRSLKAIA 245
Query: 618 QHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPID 674
+ C V ++ R L + P D+ S D + I+R+ +P++
Sbjct: 246 KEFRCPVVALSQLNRALEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNPDSADKG 305
Query: 675 RVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
++ + K RN +GT AF GEY
Sbjct: 306 VAEIIIGKQRNGPIGTCRLAFF------GEY 330
>gi|422348580|ref|ZP_16429473.1| replicative DNA helicase [Sutterella wadsworthensis 2_1_59BFAA]
gi|404659168|gb|EKB32024.1| replicative DNA helicase [Sutterella wadsworthensis 2_1_59BFAA]
Length = 465
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 117/277 (42%), Gaps = 27/277 (9%)
Query: 437 IDAYYHRTSGDEFGISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHA 495
ID Y ++ + G+ TG+ L+ EL + G+L I+ G P+ GK+ + + N+
Sbjct: 185 IDLYQNQQGSEVTGVPTGYPNLDRELAGLQRGDLIIIAGRPSMGKTSFAINIAENVGVRQ 244
Query: 496 GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLI 555
+ S+E + A++L+ AN R E E+ W + + ++
Sbjct: 245 ELPVAVFSLEMGGDQLAQRLISSV-------ANIDAQKLRKAQLEDEE---WNAFSKAVH 294
Query: 556 RCEN-----DSLPS--IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 608
R EN D P+ I + A+ V + G GL++ Y +L R + +S+
Sbjct: 295 RLENKPIYIDDTPALMISELSSRARRLVNQTGPLGLIVVDYIQLMTGRAGVDNRSTELSE 354
Query: 609 MLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR--- 664
+ +K A+ C V ++ R L + P + D+ S D + I+R
Sbjct: 355 ISRGLKALAKELHCPVIVLSQLNRSLEQRADKRPIMSDLRESGAIEQDADVIMFIYREVV 414
Query: 665 -NRD-PEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYN 699
N+D P+ + ++ + K RN +GT+ F N
Sbjct: 415 YNKDTPDK---NLAEIIIAKQRNGPIGTLRMVFRGGN 448
>gi|145597061|ref|YP_001161358.1| replicative DNA helicase [Salinispora tropica CNB-440]
gi|145306398|gb|ABP56980.1| primary replicative DNA helicase [Salinispora tropica CNB-440]
Length = 468
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 106/276 (38%), Gaps = 37/276 (13%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
DEI+A + +G G+ TG+ L+ L N L G+L IV G P GKS N
Sbjct: 195 LDEIEAVGAQ-NGMMTGVPTGFTDLDRLLNGLHAGQLIIVAGRPGLGKSTASMDFARNAA 253
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 552
A + S+E E +LL + P G+ +
Sbjct: 254 IRANQASAIFSLEMSKVEIVMRLLSAEARVPL--------------HVLRSGQLSDDDWT 299
Query: 553 SLIRCEN---------DSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQT 601
L RC D PS+ + AKA L RH ++ +V+D Y +L +++
Sbjct: 300 KLARCMGEISEAPLFVDDTPSMNLMEIRAKARRLKQRHDLKLIVVD-YLQLMTSPKRTES 358
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 660
+ V+ + +K A+ C V V+ R + P L D+ S D I
Sbjct: 359 RQQEVADLSRGLKLLAKEVECPVIAVSQLNRGPEQRTDKRPQLSDLRESGSIEQDADVVI 418
Query: 661 VIHRN-----RDPEAGPIDRVQVCVRKVRNKVVGTI 691
++HR+ P AG D V V K RN T+
Sbjct: 419 LLHRDDYYDKESPRAGEADFV---VAKHRNGPTDTV 451
>gi|257783837|ref|YP_003179054.1| replicative DNA helicase [Atopobium parvulum DSM 20469]
gi|257472344|gb|ACV50463.1| replicative DNA helicase [Atopobium parvulum DSM 20469]
Length = 479
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 119/295 (40%), Gaps = 34/295 (11%)
Query: 404 LMYLGPGALKEVVENAELYPIMGLFN-------------FRDYFDEIDAYYHRTSGDEFG 450
L Y P K+VV+ AE I + N + FDE+ + + E G
Sbjct: 139 LAYNAPEDTKQVVDQAEKL-IFDVTNRDVQQSEQNIEDIMTNLFDELQQNAGKDAA-ELG 196
Query: 451 ISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 509
+ TG+ L+ L+ L PG++ ++ P GK+ + ++ N +G L S+E
Sbjct: 197 VQTGFATLDNLFQGLRPGQMVVIGARPGVGKTSFALSMAYNA-AVSGATVALFSLEMSKI 255
Query: 510 EHARKLLEKHIK---KPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 566
E A++LL K + +N +E E+ S ++ D P
Sbjct: 256 EIAQRLLASESKVDLQTIRSSNIRNEQWPTLLEAAER--------ISRLKIIVDDTPGTT 307
Query: 567 WVLDLAKA-AVLRHGVRGLVIDPYNEL---DHQRPVSQTETEYVSQMLTMVKRFAQHHAC 622
AKA +L +G++I Y +L +R + + VS+M +K A+
Sbjct: 308 VTEIRAKARRMLNKAEKGVIIIDYLQLLSPPAERGRADSRATEVSEMSRGIKIMAKDLKA 367
Query: 623 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN-RDPEAGPIDR 675
V ++ R L N G+ P L D+ S D +++ R+ D EA DR
Sbjct: 368 PVIALSQLNRTLENRNGKRPQLSDLRESGAIEQDADIVLLLDRSLSDEEAARDDR 422
>gi|88810603|ref|ZP_01125860.1| DnaB helicase [Nitrococcus mobilis Nb-231]
gi|88792233|gb|EAR23343.1| DnaB helicase [Nitrococcus mobilis Nb-231]
Length = 461
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 122/286 (42%), Gaps = 40/286 (13%)
Query: 435 DEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINE 493
+ ID Y + GD G++TG+ + + L G+L IV G P+ GK+ + N+ E
Sbjct: 181 ERIDTLYLQ-EGDVTGLATGFTDFDRMTAGLQVGDLVIVAGRPSMGKTTF----AMNLAE 235
Query: 494 HAGWK----FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA--- 546
A + L SME A ++L S R+ ++ G+
Sbjct: 236 VAAMRGDQPVALFSMEMPGEALAMRMLS--------------SLGRVELQRIRTGRLEDS 281
Query: 547 -W--LSNTFSLI---RCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPV 598
W L++T +L+ R D P++ + A+A L+ HG+ GL++ Y +L H
Sbjct: 282 DWPRLTSTMNLLSQARLFIDDTPALTPMEMRARARRLKREHGL-GLIVVDYLQLMHLPGH 340
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCD 657
+ ++++ +K A+ V ++ R L + P + D+ S D
Sbjct: 341 KENRATQIAEISRALKAMAKELGVPVVALSQLNRSLEQRPNKRPAMSDLRESGAIEQDAD 400
Query: 658 NGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 700
+ I+R+ +P++ ++ + K RN +GT+ FL Y R
Sbjct: 401 VIVFIYRDEVYNPDSPDKGVAEIIIGKQRNGPIGTVRLTFLGRYTR 446
>gi|207743340|ref|YP_002259732.1| replicative dna helicase protein [Ralstonia solanacearum IPO1609]
gi|300704314|ref|YP_003745917.1| replicative DNA helicase [Ralstonia solanacearum CFBP2957]
gi|206594737|emb|CAQ61664.1| replicative dna helicase protein [Ralstonia solanacearum IPO1609]
gi|299071978|emb|CBJ43308.1| replicative DNA helicase [Ralstonia solanacearum CFBP2957]
Length = 473
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 120/292 (41%), Gaps = 45/292 (15%)
Query: 435 DEIDAYYHRTSGDEF-GISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR S ++ G+ TG+ L+ + + + G +L IV G P+ GK+ A NI
Sbjct: 189 ERIDELYHRDSQNDITGVPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKT----AFSLNIG 244
Query: 493 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH G + SME + A ++L GS R+ G+
Sbjct: 245 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 290
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNEL-DHQR 596
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 291 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 350
Query: 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 655
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 351 SGGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 410
Query: 656 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
D + I+R++ +P++ ++ + K RN +GT+ FL GEY
Sbjct: 411 ADVILFIYRDQVYNPDSQDKGTAEIIIGKQRNGPIGTVRLTFL------GEY 456
>gi|387928265|ref|ZP_10130943.1| replicative DNA helicase [Bacillus methanolicus PB1]
gi|387587851|gb|EIJ80173.1| replicative DNA helicase [Bacillus methanolicus PB1]
Length = 454
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 85/357 (23%), Positives = 145/357 (40%), Gaps = 32/357 (8%)
Query: 363 GDPPGQALAEELARRVGRERCWR--VRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 420
G P A E AR V + R +R D + +EV L A K ++E A
Sbjct: 94 GSVPTAANIEYYARIVEEKSLLRRLIRTATAIAQDGYTREDEVDTVLEE-AEKSILEVAH 152
Query: 421 LYPIMGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGV 475
N +D +D+I+ ++R G+ G+ TG+R L+++ +L IV
Sbjct: 153 RKNAGTFHNIKDILVRTYDKIEMLHNR-KGEITGLETGFRELDKMTAGFQRNDLIIVAAR 211
Query: 476 PNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 535
P+ GK+ + + N+ G + S+E + ++L E N R
Sbjct: 212 PSVGKTAFALNIAQNVATKTGENIAIFSLEMGAEQLVMRML-------CAEGNINSQRLR 264
Query: 536 M-TVEEFEQGK-----AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVID 587
T+ + + GK LSNT I D P I+ +K L+ HG+ +VID
Sbjct: 265 TGTLTDEDWGKLTMAMGSLSNTGIFI----DDTPGIRISEIRSKCRRLKQDHGLGMVVID 320
Query: 588 PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDI 646
+ S+ + VS++ +K A+ V ++ R + + P + DI
Sbjct: 321 YLQLIQGSGRPSENRQQEVSEISRSLKGLARELEVPVIALSQLSRGVEQRQDKRPMMSDI 380
Query: 647 SGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL-SYNR 700
S D ++R+ + E D +++ + K RN VGT+ AF+ YN+
Sbjct: 381 RESGSIEQDADIVAFLYRDDYYNKETENKDIIEIIIAKQRNGPVGTVELAFVKEYNK 437
>gi|297618194|ref|YP_003703353.1| DnaB domain-containing protein helicase [Syntrophothermus
lipocalidus DSM 12680]
gi|297146031|gb|ADI02788.1| DnaB domain protein helicase domain protein [Syntrophothermus
lipocalidus DSM 12680]
Length = 800
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 90/223 (40%), Gaps = 43/223 (19%)
Query: 216 EPLGNELRAYFAERLISAETLRRNRV-------------MQKRHGHEVVIAFPYW-RNGK 261
EP G ++ Y R S + ++R V ++ G E + P+ R G+
Sbjct: 132 EPEGADVLDYLRSRGYSDDLIQRMDVGARPVSEAGVPAGLKLPGGPEYRLLVPFRSRGGR 191
Query: 262 LVNCKYRDFN---KKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVS 318
LV R + ++ + G + ++ ++VEG MD + +E AG V+
Sbjct: 192 LVAVAGRRLDGGEPRYMYPPGMGRALLGQHVLRRDAVPVVVEGLMDAIVLEAAGVQGVVA 251
Query: 319 VPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV 378
+ GA +S + V L+Q R++LA D D G+A E L R +
Sbjct: 252 L-GGAQASGGQIEV------------------LRQYQRVVLALDADDAGRAGTERLVRAL 292
Query: 379 GRE--RCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENA 419
R + + W V KD +E+ G ++E +ENA
Sbjct: 293 VRSGVKTYVAEW-----VGGAKDPDELFRTAGASPIREAIENA 330
>gi|242002238|ref|XP_002435762.1| twinkle protein, putative [Ixodes scapularis]
gi|215499098|gb|EEC08592.1| twinkle protein, putative [Ixodes scapularis]
Length = 557
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 99/243 (40%), Gaps = 34/243 (13%)
Query: 467 GELTIVTGVPNSGKSEW-----IDALICNINEHAGWKFVLCSMENKVREHARKL--LEKH 519
GELT+ TG SGK+ + +D + +N G + K+ L LEKH
Sbjct: 306 GELTVFTGPTGSGKTTFMCEYSLDLCVQGVNTLWGSFEIQNERLAKIMLTQFSLISLEKH 365
Query: 520 IKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH 579
+ + F A+ +FE L F E SI+ VLD AV H
Sbjct: 366 LDEFDFWAD-----------KFE----LLPLYFMTFHGEQ----SIRNVLDAMSHAVYVH 406
Query: 580 GVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFVAHPRQLHNWV 637
++ +V+D + S + Q ++ +RFA H CHV V HPR+ +
Sbjct: 407 DIQHVVVDNVQFMMGVGEDSSRVDRFWKQDLLVGAFRRFATQHNCHVTLVMHPRKERD-- 464
Query: 638 GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 697
E + + I G A + DN +++ R + +QV +N+ G IG L
Sbjct: 465 SEELSNHSIFGGAKASQEADNVLILQDGRLSSSRGRKHLQVT----KNRFDGDIGVVPLE 520
Query: 698 YNR 700
+N+
Sbjct: 521 FNK 523
>gi|345020639|ref|ZP_08784252.1| replicative DNA helicase [Ornithinibacillus scapharcae TW25]
Length = 456
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 124/280 (44%), Gaps = 21/280 (7%)
Query: 432 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICN 490
D +D+I+ HR++ D GI TG+R L+++ + +L I+ P+ GK+ + + N
Sbjct: 167 DVYDKIE-MLHRSNADVTGIPTGYRDLDKMTSGFQRNDLIIIAARPSVGKTAFALNISQN 225
Query: 491 INEHAGWKFVLCSMENKVREHARKLL--EKHIKKPFFEAN--YGGSAERMTVEEFEQGKA 546
+ +AG + S+E + +++L E +I +AN G+ E +
Sbjct: 226 VAVNAGENVAIFSLEMGADQLVQRILCAEGNI-----DANRLRNGNLEPEDWTKLTMAMG 280
Query: 547 WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETE 604
LSN I D P I+ +K L+ HG+ ++ID + + +
Sbjct: 281 SLSNAGIFI----DDTPGIRVSEIRSKCRRLKQEHGLGMIMIDYLQLIQGSGKPGENRQQ 336
Query: 605 YVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 663
VS++ +K A+ + ++ R + + P + D+ S D ++
Sbjct: 337 EVSEISRSLKGLARELNVPLIALSQLSRGVEQRQDKRPMMSDLRESGSIEQDADIVGFLY 396
Query: 664 RNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL-SYNR 700
R+ D E+ + +++ + K RN VGT+ AF+ YN+
Sbjct: 397 RDDYYDKESEKQNIIEIILAKQRNGPVGTVELAFVKEYNK 436
>gi|421897257|ref|ZP_16327625.1| replicative dna helicase protein [Ralstonia solanacearum MolK2]
gi|206588463|emb|CAQ35426.1| replicative dna helicase protein [Ralstonia solanacearum MolK2]
Length = 473
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 120/292 (41%), Gaps = 45/292 (15%)
Query: 435 DEIDAYYHRTSGDEF-GISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR S ++ G+ TG+ L+ + + + G +L IV G P+ GK+ A NI
Sbjct: 189 ERIDELYHRDSQNDITGVPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKT----AFSLNIG 244
Query: 493 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH G + SME + A ++L GS R+ G+
Sbjct: 245 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 290
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNEL-DHQR 596
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 291 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 350
Query: 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 655
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 351 SGGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 410
Query: 656 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
D + I+R++ +P++ ++ + K RN +GT+ FL GEY
Sbjct: 411 ADVILFIYRDQVYNPDSQDKGTAEIIIGKQRNGPIGTVRLTFL------GEY 456
>gi|188997594|ref|YP_001931845.1| replicative DNA helicase [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932661|gb|ACD67291.1| replicative DNA helicase [Sulfurihydrogenibium sp. YO3AOP1]
Length = 470
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 134/325 (41%), Gaps = 41/325 (12%)
Query: 390 KKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF 449
K++D++ + E +++ +V EN E ++ ++ + E + S E
Sbjct: 132 KESDINSLLEEAESIIF-------QVTENKE---VVNYYSLGEVLKETLKIINELSKKET 181
Query: 450 ---GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505
GI TG+ L+ L PG+L I+ P GK+ + +++ +++ S+E
Sbjct: 182 VVTGIPTGFYDLDRLTTGFHPGDLVIIAARPGMGKTSFALSILHHLSVVDEVPSAFFSLE 241
Query: 506 NKVREHARKLLEKHIKKPFFEANYG----GSAERMTVEEFEQGKAWL--SNTFSLIRCEN 559
++ A +LL + K P + G E++T + A L +T SL
Sbjct: 242 MSRQQIAMRLLGEESKIPLKKIRSGFLNESEIEKLTEVALKMINAPLHIDDTASL----- 296
Query: 560 DSLPSIKWVLDL-AKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRF 616
+LDL AKA L+ ++ +VID L R V + E V+++ +K
Sbjct: 297 -------SILDLKAKARRLKKEKDIKIIVIDYLQLLRSHRRVENRQQE-VAEISRGLKAL 348
Query: 617 AQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAG 671
A+ V +A RQ + P L D+ S D + IHR ++P
Sbjct: 349 AKELGIPVVALAQLSRQAEMRADKRPQLADLRESGSIEQDADLVLFIHRPEYYKKNPSPQ 408
Query: 672 PIDRVQVCVRKVRNKVVGTIGEAFL 696
++ + K RN GT+ AF+
Sbjct: 409 EEGLAEIIIAKQRNGPTGTVHLAFI 433
>gi|334563252|ref|ZP_08516243.1| replicative DNA helicase [Corynebacterium bovis DSM 20582]
Length = 444
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 126/305 (41%), Gaps = 39/305 (12%)
Query: 412 LKEVVENA--ELYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 459
L+ VV+ A E++ + + +DY DE+D + + GI TG+ L+
Sbjct: 129 LESVVDRAQQEMFAVTNEASTQDYESLHDLLESTMDELDMLHEGSVAQ--GIKTGFHELD 186
Query: 460 ELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 518
++ N L G++ IV P GKS + + + H G L S+E E ++
Sbjct: 187 DITNGLRGGQMIIVAARPGVGKSTLALDFMRSCSIHQGKTSALFSLEMSKSEVMMRIFSA 246
Query: 519 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR 578
+ P A GG + E+ + + I D P++ + AKA L+
Sbjct: 247 EAEVP-LSAMRGGRMDDAQWEKLTRRIGEIDEAPIFI----DDSPNLTMMEIRAKARRLK 301
Query: 579 --HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNW 636
H + +V+D + R V + E VS+ +K A+ C V VA QL+
Sbjct: 302 QQHDLSLIVVDYLQLMSSGRKVESRQQE-VSEFSRQLKLLAKE--CDVPLVA-ISQLNRG 357
Query: 637 V---GE--PPNLYDISGSAHFINKCDNGIVIHR----NRDPE-AGPIDRVQVCVRKVRNK 686
V GE P + D+ S D ++I R NRD E AG D + + K R
Sbjct: 358 VESRGEDAQPRVSDLRESGSLEQDADMVMLISRPDAQNRDHERAGEAD---IILAKHRGG 414
Query: 687 VVGTI 691
+GTI
Sbjct: 415 PIGTI 419
>gi|325271870|ref|ZP_08138328.1| DnaB domain-containing protein [Pseudomonas sp. TJI-51]
gi|324102989|gb|EGC00378.1| DnaB domain-containing protein [Pseudomonas sp. TJI-51]
Length = 460
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 35/256 (13%)
Query: 452 STGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 510
STG L+EL L P ++T++ G+P SGK+ L I +H N V+E
Sbjct: 182 STGLEKLDELVQGLRPKKVTVIAGLPGSGKT----TLALQIAQH-----------NAVKE 226
Query: 511 HARKLLEKHIKKPFFE------ANYGGSA-------ERMTVEEFEQ--GKAWLSNTFSLI 555
+ L I+ P E A+ GG A +M +++ + G L+ L
Sbjct: 227 R-KPWLVFSIEMPGEELGLRAIASLGGVALHKLDNPAQMREDDWARMSGAVGLALEAPLF 285
Query: 556 RCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR 615
C +D + + + A+ HG+ G+V+D Y L ++ TE V ++ + +
Sbjct: 286 VC-DDPVQTPSTIRATARQCQREHGLAGIVVD-YLTLVRSERGGRSRTEEVGKISKALLQ 343
Query: 616 FAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID 674
A+ A V +A R G+ P D+ S +++HR+ D E G
Sbjct: 344 LAKEMAIPVIELAQLNRDSTKRPGKKPQSSDLRDSGEIEADASCILMVHRDMDTEEGQNG 403
Query: 675 RVQVCVRKVRNKVVGT 690
++ + K R+ VG+
Sbjct: 404 LTEILMTKCRHARVGS 419
>gi|225848306|ref|YP_002728469.1| replicative DNA helicase [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644399|gb|ACN99449.1| replicative DNA helicase [Sulfurihydrogenibium azorense Az-Fu1]
Length = 467
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 107/262 (40%), Gaps = 28/262 (10%)
Query: 450 GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508
GI TG+ L+ L PG+L I+ P GK+ + +++ +++ S+E
Sbjct: 185 GIPTGFYELDRLTTGFHPGDLVIIAARPGMGKTSFALSILHHLSIVENVPSAFFSLEMSK 244
Query: 509 REHARKLLEKHIKKPFFEANYG----GSAERMTVEEFEQGKA--WLSNTFSLIRCENDSL 562
+ A +LL + K P + G E +T + K ++ +T SL
Sbjct: 245 EQIAMRLLGEETKIPLKKIRSGFLNDKEIEAITNAALKMMKTPLYIDDTASL-------- 296
Query: 563 PSIKWVLDL-AKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 619
+LDL AKA L+ ++ +V+D L R V + E V+++ +K A+
Sbjct: 297 ----SILDLKAKARRLKKEKDIKIIVVDYLQLLRSHRRVENRQQE-VAEISRGLKGLAKE 351
Query: 620 HACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPID 674
V +A RQ + P L D+ S D + IHR ++P
Sbjct: 352 LGIPVVALAQLSRQAEMRADKRPQLADLRESGSIEQDADLVLFIHRPEYYKKNPSPQEEG 411
Query: 675 RVQVCVRKVRNKVVGTIGEAFL 696
++ + K RN G I AF+
Sbjct: 412 LAEIIIAKQRNGPTGVINLAFI 433
>gi|61806417|ref|YP_214194.1| T7-like primase/helicase [Prochlorococcus phage P-SSP7]
gi|61374342|gb|AAX44196.1| T7-like primase/helicase [Prochlorococcus phage P-SSP7]
Length = 520
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 109/504 (21%), Positives = 198/504 (39%), Gaps = 87/504 (17%)
Query: 228 ERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYRDFNKKFWQEKDTEKVFYG 286
+R IS +T + ++ + E + FPY+ +G L K +D K F E + +G
Sbjct: 64 KRGISEKTCEKYKIYRD----ETHLRFPYFDGSGCLKGFKTKDKLKNFKYEGVSTDTLFG 119
Query: 287 LDDIEGESD-IIIVEGEMDKLSMEEAGFLN--CVSVPDGAPSSVS--KKNVPSEEQDTKY 341
I+I EGE+D S EA N VS+P GA + +K +P
Sbjct: 120 QHLFPSTGKRIVITEGELDAASCYEA-MENWPMVSLPHGAAGARKDLQKQIP-------- 170
Query: 342 QYLWNCKMYLKQASRIILATDGDPPGQALAEELAR--RVGRERCWRVRWPKKNDVDHFKD 399
L+ I+L D D G+ E+ A +G+ + R ++ +KD
Sbjct: 171 --------LLQGYEEIVLFFDNDDAGRRAVEQAASILPLGKVKIAR--------LEQYKD 214
Query: 400 ANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALN 459
A++ L A++ + +A+ Y G+ + + +++ T S + L
Sbjct: 215 ASDALQANDKDAIRRAIWDAKEYQPDGIVDGKSLLEQV-----TTPSPPCNHSYPFPGLQ 269
Query: 460 EL-YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 518
+ + + GELT +T GKS + L + + G K ++E R A L+
Sbjct: 270 SMTHGIRYGELTTITAGTGQGKSTFCRQLATEL-LNTGTKVGYIALEESNRRTALGLMSV 328
Query: 519 HIKKPFFEANYGGSAERMTVEEFEQG--KAW----------LSNTFSLIRCENDSLPSIK 566
+ K A + G E T+++ +W LS R E +L
Sbjct: 329 AVGK----ALHLGEHEYTTLKDAYDSTISSWDLYLYDHFGSLSADTIYSRIEYMALGLDI 384
Query: 567 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 626
V+ L ++L G+ G D +R + QT +T ++ + ++
Sbjct: 385 KVIFLDHLSILLSGLDG---------DERRMIDQT--------MTNLRSLVERTGIKLFL 427
Query: 627 VAHPRQLHN----WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRK 682
V+H R+ G+ ++ + GSA D + + R+ + P D +R
Sbjct: 428 VSHLRRAQGDKAIEDGQKVSIGMLRGSASISQLSDTVLALERD---QQNPDD--VSTLRI 482
Query: 683 VRNKVVGTIG-EAFLSYNRVTGEY 705
++N+ G G A L Y++ T ++
Sbjct: 483 LKNRYSGETGVAAQLKYDKTTCKF 506
>gi|386333710|ref|YP_006029880.1| replicative DNA helicase [Ralstonia solanacearum Po82]
gi|421888424|ref|ZP_16319519.1| replicative DNA helicase [Ralstonia solanacearum K60-1]
gi|334196159|gb|AEG69344.1| replicative DNA helicase [Ralstonia solanacearum Po82]
gi|378966234|emb|CCF96267.1| replicative DNA helicase [Ralstonia solanacearum K60-1]
Length = 473
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 120/292 (41%), Gaps = 45/292 (15%)
Query: 435 DEIDAYYHRTSGDEF-GISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR S ++ G+ TG+ L+ + + + G +L IV G P+ GK+ A NI
Sbjct: 189 ERIDELYHRDSQNDITGVPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKT----AFSLNIG 244
Query: 493 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH G + SME + A ++L GS R+ G+
Sbjct: 245 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 290
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNEL-DHQR 596
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 291 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 350
Query: 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 655
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 351 GGGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 410
Query: 656 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
D + I+R++ +P++ ++ + K RN +GT+ FL GEY
Sbjct: 411 ADVILFIYRDQVYNPDSQDKGTAEIIIGKQRNGPIGTVRLTFL------GEY 456
>gi|259418596|ref|ZP_05742513.1| replicative DNA helicase [Silicibacter sp. TrichCH4B]
gi|259344818|gb|EEW56672.1| replicative DNA helicase [Silicibacter sp. TrichCH4B]
Length = 473
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 116/289 (40%), Gaps = 39/289 (13%)
Query: 415 VVENAELYPIMGLFNF-RDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVT 473
++E AEL +F + + I+ + GD+ G+ TG R L+++ ++ P T++
Sbjct: 146 MMERAELSAEPRTMSFMKAQMNAIETMHQIKKGDQIGVPTGLRTLDDMVSLAPKRYTLLG 205
Query: 474 GVPNSGKSEWIDALICNINEHA-----GWKFVLCSM-----ENKVREHARKLLEKHIKKP 523
G + GKS AL +I A G FV M N++ L +P
Sbjct: 206 GSTSMGKS----ALALHIAHSAAREGFGVGFVTLEMPEEDLANRINSTESGLAYNTYDRP 261
Query: 524 FFEANYGGSAERMTVEEFEQGKAWLSNTFS-LIRCENDSLPSIKWVLDLAKAAVLRHGVR 582
+ ++ R +E E+ + FS +R L K + + G +
Sbjct: 262 MSDQSF-----RQVIEAAERLQGLPIEIFSERVRDVPAILSEGKKIARKMQPNGKFKGFK 316
Query: 583 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQL------HN 635
LVID Y +L R + E+ +SQ+ +K+ A+ HV +A RQL
Sbjct: 317 LLVID-YIQLVRGRGSNSFES--LSQVANDLKQVAKQLDVHVLALAQVDRQLGKLDKWDQ 373
Query: 636 WVGEPPNLYDISGSAHFINKCDNGIVIHRNR--------DPEAGPIDRV 676
W P+L + GS N DN + + R + P + P DR
Sbjct: 374 WPQARPSLAHLRGSGDLENAPDNVMFVFRPQYFLTPPRCTPPSDPSDRA 422
>gi|255324075|ref|ZP_05365200.1| replicative DNA helicase [Corynebacterium tuberculostearicum SK141]
gi|311740297|ref|ZP_07714128.1| replicative DNA helicase DnaB [Corynebacterium pseudogenitalium
ATCC 33035]
gi|255298932|gb|EET78224.1| replicative DNA helicase [Corynebacterium tuberculostearicum SK141]
gi|311304680|gb|EFQ80752.1| replicative DNA helicase DnaB [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 476
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 117/289 (40%), Gaps = 39/289 (13%)
Query: 417 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGV 475
+ AE Y ++G DE+ A + G E G+ TG+ L++L N L G++ IV
Sbjct: 187 KTAEDYRVLGDL-IDPTIDEL-AALQQAGGVELGVPTGFIDLDKLTNGLHAGQMVIVAAR 244
Query: 476 PNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 535
P GKS + + + G V+ S+E E +LL + + G R
Sbjct: 245 PGVGKSTLAMDFMRSCSLQHGKSSVIFSLEMSASEIVMRLLSAESEVKLADMRGG----R 300
Query: 536 MTVEEFEQGKAWLSNTFSLIRCEN-----DSLPSIKWVLDLAKAAVLR--HGVRGLVIDP 588
++ E+ W +L R ++ D P++ + +KA L+ HG+ +V+D
Sbjct: 301 VSTED------WAKIDETLNRVQDAPLFIDDSPNLTMMEIRSKARRLKQQHGLDLIVLDY 354
Query: 589 YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDIS 647
+ + V + E VS+ +K A+ + ++ R + P L D+
Sbjct: 355 LQLMSSGKKVESRQQE-VSEFSRQLKLLAKELEVPLIAISQLNRGPEARTDKKPQLADLR 413
Query: 648 GSAHFINKCDNGIVIHR----NRDPE-------------AGPIDRVQVC 679
S D ++++R +RD E GPID VQV
Sbjct: 414 ESGSLEQDADMVMLLYRPDSQDRDNERAGEADIILAKHRGGPIDTVQVA 462
>gi|262372193|ref|ZP_06065472.1| replicative DNA helicase [Acinetobacter junii SH205]
gi|262312218|gb|EEY93303.1| replicative DNA helicase [Acinetobacter junii SH205]
Length = 481
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 110/265 (41%), Gaps = 22/265 (8%)
Query: 443 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G+ G+STG+ L N+ Y + G+L IV P+ GK+ + L+ ++ + ++
Sbjct: 205 KMDGNITGLSTGFLELDNKTYGMQAGDLIIVAARPSMGKTTFAMNLVESVLFNCNLPALV 264
Query: 502 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE--- 558
SME A +L+ ++YG + G W T ++++ +
Sbjct: 265 YSMEMPADSIAMRLI----------SSYGKVHQGHLRSGKLDGDEWSKVTGTILQLQEKH 314
Query: 559 -----NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 613
+ +LP + + A + G G ++ Y +L + +S++ +
Sbjct: 315 LYIDDSSALPPTEVRARARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSL 374
Query: 614 KRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEA 670
K A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 375 KALAKEMNCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKES 434
Query: 671 GPIDRVQVCVRKVRNKVVGTIGEAF 695
++ + K RN +GT+ AF
Sbjct: 435 KEAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|347534448|ref|YP_004841118.1| DNA primase [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504504|gb|AEN99186.1| DNA primase [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 611
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 116/279 (41%), Gaps = 69/279 (24%)
Query: 206 REITEDSLELEPLG---NE--LRAYFAERLISAETLRRNRV--------MQKRHGHEVVI 252
R+I+++ +E LG NE L+ YF E+ ++ + LR+ + ++ R +++
Sbjct: 146 RKISDEMIETFNLGYAPNERILKKYFEEKKVNYQDLRKTGLFTETNDGSLKDRFAGRLMV 205
Query: 253 AFPYWRN--GKLVNCKYRDFNK-----KFWQEKDTE-----KVFYGLD----DIEGESDI 296
RN GK V R +K K+ +TE K+ Y D +I + D+
Sbjct: 206 PI---RNESGKTVGFSGRLLHKDDDMPKYLNTPETELFNKRKIIYNFDLAKPEIRQKHDV 262
Query: 297 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 356
I+ EG MD +S +AG N V+ S +EEQ +++ K KQ
Sbjct: 263 ILFEGFMDVISAYQAGVKNGVA---------SMGTSLTEEQ------IYDLKRVTKQ--- 304
Query: 357 IILATDGDPPGQAL---AEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALK 413
I + DGD PGQ A +L ++ + ++ P D D ++ N G + +
Sbjct: 305 IYVCYDGDTPGQKATNRAVDLLQKDSNLKIGIIQMPDGIDPDEYRRNN------GETSFQ 358
Query: 414 EVVENAE----------LYPIMGLFNFRDYFDEIDAYYH 442
+VVEN L L N D D ID H
Sbjct: 359 QVVENGRESIVKFKINYLRSQFNLTNEEDKLDYIDKVLH 397
>gi|427401338|ref|ZP_18892410.1| replicative DNA helicase [Massilia timonae CCUG 45783]
gi|425719761|gb|EKU82691.1| replicative DNA helicase [Massilia timonae CCUG 45783]
Length = 465
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 111/274 (40%), Gaps = 30/274 (10%)
Query: 434 FDEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 491
+ ID Y R G+ G+ TG+ L+ + + L PG+L IV G P+ GK+ + + N+
Sbjct: 182 VERIDELYSRENQGEITGVPTGFIDLDRMTSGLQPGDLVIVAGRPSMGKTAFSVNIGENV 241
Query: 492 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----W 547
AG + SME + A ++L GS ++ G+ W
Sbjct: 242 AIEAGLPVAVFSMEMGGAQLAMRML--------------GSVGQLDQHRLRTGRLHDEDW 287
Query: 548 LSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
T ++ + + D P++ + A+ + G GL+I Y +L
Sbjct: 288 PRLTHAIQKMNDAQLYIDETPALNPIEMRARARRLARQCGKLGLIIVDYLQLMQGSKPGD 347
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNG 659
+S++ +K A+ C V ++ R L + P + D+ S D
Sbjct: 348 NRASEISEISRSLKGLAKELQCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVI 407
Query: 660 IVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTI 691
I ++R+ +P++ ++ + K RN +G I
Sbjct: 408 IFLYRDEVYNPDSPDKGTAEIIIGKQRNGPIGAI 441
>gi|385680178|ref|ZP_10054106.1| replicative DNA helicase [Amycolatopsis sp. ATCC 39116]
Length = 467
Score = 47.4 bits (111), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 123/290 (42%), Gaps = 32/290 (11%)
Query: 410 GALKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRA 457
G + EVV+ A+ +Y + DY DEIDA R G G+ TG+
Sbjct: 158 GDIDEVVDRAQAAIYDVTERRTSEDYVALEELLQPTMDEIDAIASR-GGVSQGVPTGFAD 216
Query: 458 LNELYNVL-PGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENKVREHARK 514
L+E+ N L PG++ IV P GKS +D A C+I G V+ S+E E +
Sbjct: 217 LDEVTNGLHPGQMVIVAARPGVGKSTLGLDFARSCSIKH--GMTSVIFSLEMSRIEIVMR 274
Query: 515 LLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 574
+L + + G RM+ +++ + +S +DS P++ + AKA
Sbjct: 275 MLSAEARIRLADMRSG----RMSDDDWTRLARRMSEISEAPLFIDDS-PNMTMMEIRAKA 329
Query: 575 AVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PR 631
L R+ ++ +V+D Y +L ++ + VS+ +K A+ V ++ R
Sbjct: 330 RRLKQRNDLKLVVLD-YMQLMTSGKRVESRQQEVSEFSRQLKLLAKELEVPVIAISQLNR 388
Query: 632 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRV 676
+ P L D+ S D I+I+R DP AG D +
Sbjct: 389 GPEQRTDKRPMLSDLRESGSLEQDADMVILINRPDAWERDDPRAGEADLI 438
>gi|406945708|gb|EKD77133.1| hypothetical protein ACD_42C00471G0003 [uncultured bacterium]
Length = 464
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 86/385 (22%), Positives = 146/385 (37%), Gaps = 60/385 (15%)
Query: 343 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 402
YL+ A+ +I D L + +A VG + V P D D E
Sbjct: 96 YLYELAQNTPSAANVIAYADIVREHAILRQLIA--VGTDMTNSVFNPDGRDSQALLDHAE 153
Query: 403 VLMY---------LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIST 453
L+Y GP ++ ++ A D +D YH T G GI T
Sbjct: 154 QLVYKISEHQQRGAGPVSISSILAKAT--------------DRLDYLYH-TKGALTGIPT 198
Query: 454 GWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWK----FVLCSMENKV 508
G+ + L + L PG++ ++ G P+ GK+ + NI E A K ++ SME
Sbjct: 199 GFSDFDHLTSGLQPGDMIVIAGRPSMGKTSF----AMNIAEFAAIKQEKPVMVFSMEMPA 254
Query: 509 REHARKLLEKHIKKPFFEANYGGSAE----RMT--VEEFEQGKAWLSNTFSLIRCENDSL 562
+ A +++ + + G ++ R+T V + K ++ +T +L E
Sbjct: 255 EQLALRMISSLGRIDQHKVRTGQLSDSDWPRVTSAVSVLSESKLYIDDTPALSPLE---- 310
Query: 563 PSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHAC 622
+ A+ +HG L++ Y +L + T +S++ +K A+
Sbjct: 311 -----LRARARRVARKHGGLSLLVIDYLQLMTSPASRENRTNEISEISRSLKSIAKEFNV 365
Query: 623 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRD-PEAGPIDRV 676
V ++ R L + P + D+ S D I+R N D P G
Sbjct: 366 PVIALSQLNRGLEQRTDKRPVMSDLRESGAIEQDADVIAFIYRDEVYNEDSPHKG---TA 422
Query: 677 QVCVRKVRNKVVGTIGEAFL-SYNR 700
++ +RK RN +G FL Y R
Sbjct: 423 EIIIRKQRNGPIGDFRLTFLGQYTR 447
>gi|270157428|ref|ZP_06186085.1| replicative DNA helicase [Legionella longbeachae D-4968]
gi|289164179|ref|YP_003454317.1| Replicative DNA helicase [Legionella longbeachae NSW150]
gi|269989453|gb|EEZ95707.1| replicative DNA helicase [Legionella longbeachae D-4968]
gi|288857352|emb|CBJ11180.1| Replicative DNA helicase [Legionella longbeachae NSW150]
Length = 460
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 123/288 (42%), Gaps = 40/288 (13%)
Query: 434 FDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 491
++IDA YH +GD G++TG L+E+ + L P +L IV G P+ GK+ L+ N+
Sbjct: 179 VEKIDALYH--NGDAITGLATGLSDLDEMTSGLQPSDLVIVAGRPSMGKT----TLVMNM 232
Query: 492 NEHAGWK----FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE----RMT--VEEF 541
EHA K ++ SME A +++ + + G + R+T V
Sbjct: 233 AEHAAIKSGKPVLVFSMEMPSDSLAMRMMSSLGRIDQHKIRTGKLDDDDWPRVTSAVHML 292
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV--S 599
+ ++ +T +L E + A+ HG GL++ Y +L + P +
Sbjct: 293 SEAPLFIDDTPALSPGEMRA---------RARRLAKEHGSVGLIVVDYLQL-MKVPGFNA 342
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ T +S++ +K A+ V ++ R L + P + D+ S D
Sbjct: 343 ENRTAEISEISRSLKSLAKELQVPVIALSQLNRSLEQRADKRPVMSDLRESGAIEQDADL 402
Query: 659 GIVIHRNR-----DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 700
I+R+ P+ G ++ V K RN +G + AF+ Y R
Sbjct: 403 ICFIYRDEVYYEDSPDKG---TAEIIVAKQRNGPIGKVRVAFIGKYTR 447
>gi|417932180|ref|ZP_12575529.1| replicative DNA helicase [Propionibacterium acnes SK182B-JCVI]
gi|340774790|gb|EGR97265.1| replicative DNA helicase [Propionibacterium acnes SK182B-JCVI]
Length = 448
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 127/316 (40%), Gaps = 41/316 (12%)
Query: 406 YLGPGALKEVVENA--------------ELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-G 450
Y G G + ++V+ A E +P+ LF FDE++A R GD G
Sbjct: 136 YQGQGEVADIVDAAQQTLYDVSTRKTSEEYHPLSELFE--STFDELEAIEAR--GDAMAG 191
Query: 451 ISTGWRALNELYN-VLPGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENK 507
I TG+ L+EL N +PG++ IV P GKS +D A I H + S+E
Sbjct: 192 IPTGFTDLDELTNGFMPGQMIIVAARPAMGKSTLALDFARAAAIKNH--LAAAIFSLEMG 249
Query: 508 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 567
E +LL G R++ E++++ + S +DS P++
Sbjct: 250 RNEIVMRLLSAEAGIELSRMRAG----RLSEEDWQRMVDKTTQISSAPLFIDDS-PNLTM 304
Query: 568 VLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 625
+ AKA ++ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 305 MEIRAKARRMKQKFDLKLIVIDYMQLMTSGKKVESRQLE-VSEFSRQIKLLAKELEIPVV 363
Query: 626 FVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVC 679
++ R + P + D+ S D I++HR P AG D +
Sbjct: 364 ALSQLNRGPEQRTDKKPMMSDLRESGSLEQDADVVILLHREDVYDKESPRAGEAD---II 420
Query: 680 VRKVRNKVVGTIGEAF 695
V K RN T+ F
Sbjct: 421 VAKHRNGPTRTVPVVF 436
>gi|225017890|ref|ZP_03707082.1| hypothetical protein CLOSTMETH_01824 [Clostridium methylpentosum
DSM 5476]
gi|224949402|gb|EEG30611.1| hypothetical protein CLOSTMETH_01824 [Clostridium methylpentosum
DSM 5476]
Length = 635
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 123/305 (40%), Gaps = 49/305 (16%)
Query: 225 YFAERLISAETLRRNRV-----MQKRHGHEVVIAFPYWRNGKLVNCK----YRDFNKKFW 275
YFA R +SA + R R+ + + G + WR + + R+ + K
Sbjct: 123 YFARRGLSAGIIERFRLGYDPAFRTQEGGSPAV----WRAAIVPTGRGCYLARNLDSKGK 178
Query: 276 QEKDTEK---VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 332
++ ++ + + +EGE+ + +VEGE D LS+ EAG A S NV
Sbjct: 179 DDRIRKRGGSPLFAYESLEGETPVFVVEGEFDALSVYEAG--------GEAVGLGSTANV 230
Query: 333 PSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKN 392
P Q + C++ A +IL+ D D G+ A L +G V+ + N
Sbjct: 231 P--------QLVKLCRVS-PPACPLILSLDNDEEGEKAAARLEEELG---ALGVKTVRAN 278
Query: 393 DVDHFKDANEVLMYLGP---GALKEVVENAELYPIMGLFNFRDYFDEIDAYYH------- 442
+KDANE L A++ VE AE + R+ + A H
Sbjct: 279 IAGEYKDANEALTAEREAFCAAVRHAVEQAEGLEELERQKEREEYLATSAGSHLQEFLDG 338
Query: 443 -RTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 500
S D I TG+ L+E+ + L L + + + GK+ + L + AG V
Sbjct: 339 IAASVDTPCIPTGFPKLDEMLDGGLYEGLYCIGAITSLGKTTFAMQLADQVA-RAGKDVV 397
Query: 501 LCSME 505
+ S+E
Sbjct: 398 IFSLE 402
>gi|395206012|ref|ZP_10396643.1| replicative DNA helicase [Propionibacterium humerusii P08]
gi|422440911|ref|ZP_16517724.1| replicative DNA helicase [Propionibacterium acnes HL037PA3]
gi|422471972|ref|ZP_16548460.1| replicative DNA helicase [Propionibacterium acnes HL037PA2]
gi|422572735|ref|ZP_16648302.1| replicative DNA helicase [Propionibacterium acnes HL044PA1]
gi|313836451|gb|EFS74165.1| replicative DNA helicase [Propionibacterium acnes HL037PA2]
gi|314929064|gb|EFS92895.1| replicative DNA helicase [Propionibacterium acnes HL044PA1]
gi|314970989|gb|EFT15087.1| replicative DNA helicase [Propionibacterium acnes HL037PA3]
gi|328906648|gb|EGG26423.1| replicative DNA helicase [Propionibacterium humerusii P08]
Length = 448
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 130/319 (40%), Gaps = 47/319 (14%)
Query: 406 YLGPGALKEVVENA--------------ELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-G 450
Y G G + ++V+ A E +P+ LF FDE++A R GD G
Sbjct: 136 YQGQGEVSDIVDAAQQTLYDVSTRKTSEEYHPLSELFE--STFDELEAIEAR--GDAMAG 191
Query: 451 ISTGWRALNELYN-VLPGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENK 507
I TG+ L+EL N +PG++ IV P GKS +D A I H + S+E
Sbjct: 192 IPTGFTDLDELTNGFMPGQMIIVAARPAMGKSTLALDFARAAAIKNH--LAAAIFSLEMG 249
Query: 508 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 567
E +LL G R++ E++++ + S +DS P++
Sbjct: 250 RNEIVMRLLSAEAGIELSRMRAG----RLSEEDWQRMVDKTTQISSAPLFIDDS-PNLTM 304
Query: 568 VLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 625
+ AKA ++ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 305 MEIRAKARRMKQKSDLKLVVIDYMQLMTSGKKVESRQLE-VSEFSRQIKLLAKELEIPVV 363
Query: 626 FVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRV 676
++ P Q ++ + P + D+ S D I++HR P AG D
Sbjct: 364 ALSQLNRGPEQRND---KKPMMSDLRESGSLEQDADVVILLHREDVYDKESPRAGEAD-- 418
Query: 677 QVCVRKVRNKVVGTIGEAF 695
+ V K RN T+ F
Sbjct: 419 -IIVAKHRNGPTRTVPVVF 436
>gi|398814762|ref|ZP_10573440.1| replicative DNA helicase [Brevibacillus sp. BC25]
gi|398035850|gb|EJL29076.1| replicative DNA helicase [Brevibacillus sp. BC25]
Length = 449
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 115/265 (43%), Gaps = 16/265 (6%)
Query: 440 YYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWK 498
+ + GD GISTG+ L+++ L +L I+ P+ GK+ + L N+ AG
Sbjct: 175 FLSQRRGDITGISTGYTDLDKMTAGLQRSDLIILAARPSVGKTAFALNLAQNVAARAGET 234
Query: 499 FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERM-TVEEFEQGKAWLS-NTFSLIR 556
+ S+E A +L+++ I E N S R ++EE + K ++ T +
Sbjct: 235 VAIFSLEM----GAPQLVQRMI---CAEGNLDASRMRSGSLEEDDWQKLTMAIGTLAKAP 287
Query: 557 CENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
D P + AK L+ G+ GL++ Y +L H R + VS++ +K
Sbjct: 288 IYIDDSPGVTVQDIRAKCRRLQTEKGL-GLILIDYLQLIHGRGKGDNRQQEVSEISRTLK 346
Query: 615 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 671
A+ V ++ R + + P + DI S D ++R+ D E+
Sbjct: 347 GIARELNVPVIALSQLSRGVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYDKESE 406
Query: 672 PIDRVQVCVRKVRNKVVGTIGEAFL 696
+ ++V + K RN GT+ AFL
Sbjct: 407 SKNVIEVIIAKQRNGPTGTVELAFL 431
>gi|384136970|ref|YP_005519684.1| replicative DNA helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339291055|gb|AEJ45165.1| replicative DNA helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 463
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 118/271 (43%), Gaps = 16/271 (5%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
F+ I+ Y + G+ G+ TG+ L+ + + +L IV P+ GK+ + + N+
Sbjct: 185 FERIEQLYE-SDGNITGVPTGYSDLDRMTSGFQKSDLIIVAARPSVGKTAFALNIAQNVA 243
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN--YGGSAERMTVEEFEQGKAWLSN 550
AG + S+E + +++L + F + + G+ + + G LSN
Sbjct: 244 VRAGLPVAIFSLEMSKDQLVQRML---CAEAFIDGHKLRNGTLDDEDWPKLSMGVTTLSN 300
Query: 551 TFSLI-RCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS-QTETEYVSQ 608
+ I ++P ++ L K L HG+ +VID Y +L H R V+ + + +S
Sbjct: 301 SPIYIDDTPGITVPEMRSKLRRLK---LEHGLGFVVID-YLQLIHGRRVAGENRQQEISD 356
Query: 609 MLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR- 666
+ +K+ A+ + +A R + + P L DI S D ++R+
Sbjct: 357 ISRSLKQLARELEVPILALAQLSRSVEQRQDKRPMLSDIRESGSIEQDADVVAFLYRDDY 416
Query: 667 -DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
+P+ + V+V + K RN G I FL
Sbjct: 417 YNPDTENPNVVEVIIAKQRNGPTGKIELVFL 447
>gi|169633235|ref|YP_001706971.1| replicative DNA helicase;chromosome replication, chain elongation
[Acinetobacter baumannii SDF]
gi|169152027|emb|CAP00907.1| replicative DNA helicase;chromosome replication, chain elongation
[Acinetobacter baumannii]
Length = 481
Score = 47.0 bits (110), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 53/264 (20%), Positives = 113/264 (42%), Gaps = 20/264 (7%)
Query: 443 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G+ G++TG+ L N+ + PG+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTSGMQPGDLIIVAARPSMGKTTFAMNLVESVLQYNKLPALV 264
Query: 502 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
SME A +L+ + H++ +A+ T+ + +Q ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQQMHLYIDDS--- 320
Query: 555 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTEVRARARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 615 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 671
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMNCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 672 PIDRVQVCVRKVRNKVVGTIGEAF 695
++ + K RN +GT+ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|299769497|ref|YP_003731523.1| replicative DNA helicase [Acinetobacter oleivorans DR1]
gi|424744271|ref|ZP_18172569.1| replicative DNA helicase [Acinetobacter baumannii WC-141]
gi|298699585|gb|ADI90150.1| replicative DNA helicase [Acinetobacter oleivorans DR1]
gi|422943010|gb|EKU38041.1| replicative DNA helicase [Acinetobacter baumannii WC-141]
Length = 481
Score = 47.0 bits (110), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 113/264 (42%), Gaps = 20/264 (7%)
Query: 443 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G+ G++TG+ L N+ + PG+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTSGMQPGDLIIVAARPSMGKTTFAMNLVESVLQYNKLPALV 264
Query: 502 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
SME A +L+ + H++ +A+ T+ + +Q ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQQMHLYIDDS--- 320
Query: 555 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTELRARARRVAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 615 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 671
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMQCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 672 PIDRVQVCVRKVRNKVVGTIGEAF 695
++ + K RN +G++ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGSVRLAF 459
>gi|393778270|ref|ZP_10366549.1| replicative DNA helicase [Ralstonia sp. PBA]
gi|392714736|gb|EIZ02331.1| replicative DNA helicase [Ralstonia sp. PBA]
Length = 464
Score = 47.0 bits (110), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 117/284 (41%), Gaps = 39/284 (13%)
Query: 435 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR + ++ G++TG+ L+ + + + G+L IV G P+ GK+ A NI
Sbjct: 180 ERIDELYHRDNQNDITGVATGFADLDRMTSGMQAGDLIIVAGRPSMGKT----AFSLNIG 235
Query: 493 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH G + SME + A ++L GS R+ G+
Sbjct: 236 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 281
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNEL-DHQR 596
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 282 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 341
Query: 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 655
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 GGGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 401
Query: 656 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 697
D + I+R+ +P++ ++ + K RN +GT+ FL
Sbjct: 402 ADVILFIYRDEVYNPDSQDKGTAEIIIGKQRNGPIGTVRLTFLG 445
>gi|429462749|ref|YP_007184212.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|451811501|ref|YP_007447956.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|429338263|gb|AFZ82686.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|451776659|gb|AGF47658.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 455
Score = 47.0 bits (110), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 123/290 (42%), Gaps = 32/290 (11%)
Query: 420 ELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPN 477
E+ P++ + ID Y R S + G+ TG+ L+++ + L PG+L +V G P+
Sbjct: 168 EIQPLLS-----QVVERIDELYSRDSNSDITGVPTGFIDLDKMTSGLQPGDLIVVAGRPS 222
Query: 478 SGKSEWIDALICNINEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 533
GK+ A NI E+ G + SME + A ++L + G
Sbjct: 223 MGKT----AFSMNIGEYVSIEHGLPVAIFSMEMSATQLAMRMLGSIGVIDQHKIRTG--- 275
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCEN---DSLPSIKWVLDLAKAAVLRH--GVRGLVIDP 588
R+T E++ + ++N ++ D P++ + AK L G GL+I
Sbjct: 276 -RLTEEDWPK----ITNAIQSMQDAQLYIDESPALNVMEVRAKTRRLSRQCGQLGLIIID 330
Query: 589 YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDIS 647
Y +L TE +S++ +K A+ C + ++ R L + P + D+
Sbjct: 331 YMQLMSGNGEENRATE-ISEISRSLKGLAKELNCPLIALSQLNRSLEQRQNKRPVMSDLR 389
Query: 648 GSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
S D + I+R+ +P++ ++ + K RN +GTI F
Sbjct: 390 ESGAIEQDADLILFIYRDEIYNPDSQEKGIAEIIIGKQRNGPIGTIKLTF 439
>gi|421857386|ref|ZP_16289723.1| replicative DNA helicase [Acinetobacter radioresistens DSM 6976 =
NBRC 102413]
gi|403187162|dbj|GAB75924.1| replicative DNA helicase [Acinetobacter radioresistens DSM 6976 =
NBRC 102413]
Length = 453
Score = 47.0 bits (110), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 111/264 (42%), Gaps = 19/264 (7%)
Query: 439 AYYHRTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGW 497
A H E GI TG+ L N+L + G+L I+ P+ GK+ + L ++ +
Sbjct: 172 AALHENRAFEGGIKTGFIELDNKLGEIGKGDLVIIGARPSMGKTTFAQNLAADMMINQSL 231
Query: 498 KFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRC 557
+ S+E ++ A++L+ I + G AE + A L + +
Sbjct: 232 PVLFVSIEMSGKQIAQRLI-SGIGQVELRKVLSGHAEMEDCGKINTAAAILEK--APLEI 288
Query: 558 ENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT----ETEYVSQMLTMV 613
++++ + + A+ +++G G + Y + P+++ + + ++ +
Sbjct: 289 DDNARTTTSTIRRSARKMSMKYGKLGAIFVDY--IQKVTPLTKNNFGRSDKDIGEVSADL 346
Query: 614 KRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDP 668
KR A+ C V+ +A R L N + P D+ S D + I+R NRD
Sbjct: 347 KRMARDFDCPVFALAQLNRNLENRPNKRPVNADLKESGDLEQDADIIMFIYRDEVYNRDS 406
Query: 669 -EAGPIDRVQVCVRKVRNKVVGTI 691
EAG ++ + K RN GT+
Sbjct: 407 KEAGT---AEIIIGKARNGSTGTV 427
>gi|293609463|ref|ZP_06691765.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|375135280|ref|YP_004995930.1| replicative DNA helicase;chromosome replication, chain elongation
[Acinetobacter calcoaceticus PHEA-2]
gi|427425375|ref|ZP_18915471.1| replicative DNA helicase [Acinetobacter baumannii WC-136]
gi|292827915|gb|EFF86278.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325122725|gb|ADY82248.1| replicative DNA helicase;chromosome replication, chain elongation
[Acinetobacter calcoaceticus PHEA-2]
gi|425697866|gb|EKU67526.1| replicative DNA helicase [Acinetobacter baumannii WC-136]
Length = 481
Score = 47.0 bits (110), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 113/264 (42%), Gaps = 20/264 (7%)
Query: 443 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G+ G++TG+ L N+ + PG+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTSGMQPGDLIIVAARPSMGKTTFAMNLVESVLQYNKLPALV 264
Query: 502 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
SME A +L+ + H++ +A+ T+ + +Q ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQQMHLYIDDS--- 320
Query: 555 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTELRARARRVAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 615 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 671
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMQCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 672 PIDRVQVCVRKVRNKVVGTIGEAF 695
++ + K RN +G++ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGSVRLAF 459
>gi|169795501|ref|YP_001713294.1| replicative DNA helicase;chromosome replication, chain elongation
[Acinetobacter baumannii AYE]
gi|184158697|ref|YP_001847036.1| replicative DNA helicase [Acinetobacter baumannii ACICU]
gi|213158559|ref|YP_002319857.1| replicative DNA helicase [Acinetobacter baumannii AB0057]
gi|215482988|ref|YP_002325193.1| replicative DNA helicase [Acinetobacter baumannii AB307-0294]
gi|239501435|ref|ZP_04660745.1| replicative DNA helicase [Acinetobacter baumannii AB900]
gi|260554563|ref|ZP_05826784.1| replicative DNA helicase [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|301345095|ref|ZP_07225836.1| replicative DNA helicase [Acinetobacter baumannii AB056]
gi|301510833|ref|ZP_07236070.1| replicative DNA helicase [Acinetobacter baumannii AB058]
gi|301595322|ref|ZP_07240330.1| replicative DNA helicase [Acinetobacter baumannii AB059]
gi|332850736|ref|ZP_08432983.1| replicative DNA helicase [Acinetobacter baumannii 6013150]
gi|332866953|ref|ZP_08437279.1| replicative DNA helicase [Acinetobacter baumannii 6013113]
gi|332873689|ref|ZP_08441632.1| replicative DNA helicase [Acinetobacter baumannii 6014059]
gi|384131273|ref|YP_005513885.1| dnaB [Acinetobacter baumannii 1656-2]
gi|384143774|ref|YP_005526484.1| replicative DNA helicase,chromosome replication, chain elongation
[Acinetobacter baumannii MDR-ZJ06]
gi|385238111|ref|YP_005799450.1| replicative DNA helicase [Acinetobacter baumannii TCDC-AB0715]
gi|387123391|ref|YP_006289273.1| replicative DNA helicase [Acinetobacter baumannii MDR-TJ]
gi|403676329|ref|ZP_10938315.1| replicative DNA helicase [Acinetobacter sp. NCTC 10304]
gi|407933300|ref|YP_006848943.1| replicative DNA helicase [Acinetobacter baumannii TYTH-1]
gi|416147788|ref|ZP_11602025.1| replicative DNA helicase [Acinetobacter baumannii AB210]
gi|417549065|ref|ZP_12200145.1| replicative DNA helicase [Acinetobacter baumannii Naval-18]
gi|417552427|ref|ZP_12203497.1| replicative DNA helicase [Acinetobacter baumannii Naval-81]
gi|417560164|ref|ZP_12211043.1| replicative DNA helicase [Acinetobacter baumannii OIFC137]
gi|417566715|ref|ZP_12217587.1| replicative DNA helicase [Acinetobacter baumannii OIFC143]
gi|417569931|ref|ZP_12220789.1| replicative DNA helicase [Acinetobacter baumannii OIFC189]
gi|417574714|ref|ZP_12225568.1| replicative DNA helicase [Acinetobacter baumannii Canada BC-5]
gi|417578347|ref|ZP_12229184.1| replicative DNA helicase [Acinetobacter baumannii Naval-17]
gi|417869012|ref|ZP_12514007.1| replicative DNA helicase [Acinetobacter baumannii ABNIH1]
gi|417873970|ref|ZP_12518832.1| replicative DNA helicase [Acinetobacter baumannii ABNIH2]
gi|417879276|ref|ZP_12523851.1| replicative DNA helicase [Acinetobacter baumannii ABNIH3]
gi|417881334|ref|ZP_12525658.1| replicative DNA helicase [Acinetobacter baumannii ABNIH4]
gi|421198171|ref|ZP_15655338.1| replicative DNA helicase [Acinetobacter baumannii OIFC109]
gi|421202657|ref|ZP_15659804.1| replicative DNA helicase [Acinetobacter baumannii AC12]
gi|421457208|ref|ZP_15906545.1| replicative DNA helicase [Acinetobacter baumannii IS-123]
gi|421536100|ref|ZP_15982351.1| replicative DNA helicase,chromosome replication, chain elongation
[Acinetobacter baumannii AC30]
gi|421622919|ref|ZP_16063811.1| replicative DNA helicase [Acinetobacter baumannii OIFC074]
gi|421626390|ref|ZP_16067219.1| replicative DNA helicase [Acinetobacter baumannii OIFC098]
gi|421629794|ref|ZP_16070509.1| replicative DNA helicase [Acinetobacter baumannii OIFC180]
gi|421633783|ref|ZP_16074412.1| replicative DNA helicase [Acinetobacter baumannii Naval-13]
gi|421644506|ref|ZP_16084988.1| replicative DNA helicase [Acinetobacter baumannii IS-235]
gi|421648820|ref|ZP_16089219.1| replicative DNA helicase [Acinetobacter baumannii IS-251]
gi|421651789|ref|ZP_16092156.1| replicative DNA helicase [Acinetobacter baumannii OIFC0162]
gi|421653981|ref|ZP_16094312.1| replicative DNA helicase [Acinetobacter baumannii Naval-72]
gi|421660101|ref|ZP_16100309.1| replicative DNA helicase [Acinetobacter baumannii Naval-83]
gi|421664563|ref|ZP_16104703.1| replicative DNA helicase [Acinetobacter baumannii OIFC110]
gi|421676133|ref|ZP_16116045.1| replicative DNA helicase [Acinetobacter baumannii OIFC065]
gi|421679600|ref|ZP_16119469.1| replicative DNA helicase [Acinetobacter baumannii OIFC111]
gi|421686309|ref|ZP_16126064.1| replicative DNA helicase [Acinetobacter baumannii IS-143]
gi|421691522|ref|ZP_16131181.1| replicative DNA helicase [Acinetobacter baumannii IS-116]
gi|421695085|ref|ZP_16134699.1| replicative DNA helicase [Acinetobacter baumannii WC-692]
gi|421698725|ref|ZP_16138264.1| replicative DNA helicase [Acinetobacter baumannii IS-58]
gi|421704201|ref|ZP_16143648.1| replicative DNA helicase [Acinetobacter baumannii ZWS1122]
gi|421707850|ref|ZP_16147234.1| replicative DNA helicase [Acinetobacter baumannii ZWS1219]
gi|421787320|ref|ZP_16223676.1| replicative DNA helicase [Acinetobacter baumannii Naval-82]
gi|421792876|ref|ZP_16229021.1| replicative DNA helicase [Acinetobacter baumannii Naval-2]
gi|421795490|ref|ZP_16231573.1| replicative DNA helicase [Acinetobacter baumannii Naval-21]
gi|421802373|ref|ZP_16238326.1| replicative DNA helicase [Acinetobacter baumannii Canada BC1]
gi|421804543|ref|ZP_16240453.1| replicative DNA helicase [Acinetobacter baumannii WC-A-694]
gi|421806845|ref|ZP_16242707.1| replicative DNA helicase [Acinetobacter baumannii OIFC035]
gi|424051800|ref|ZP_17789332.1| replicative DNA helicase [Acinetobacter baumannii Ab11111]
gi|424059439|ref|ZP_17796930.1| replicative DNA helicase [Acinetobacter baumannii Ab33333]
gi|424063347|ref|ZP_17800832.1| replicative DNA helicase [Acinetobacter baumannii Ab44444]
gi|425749984|ref|ZP_18867951.1| replicative DNA helicase [Acinetobacter baumannii WC-348]
gi|425751346|ref|ZP_18869294.1| replicative DNA helicase [Acinetobacter baumannii Naval-113]
gi|445405293|ref|ZP_21431270.1| replicative DNA helicase [Acinetobacter baumannii Naval-57]
gi|445444410|ref|ZP_21442978.1| replicative DNA helicase [Acinetobacter baumannii WC-A-92]
gi|445459997|ref|ZP_21447906.1| replicative DNA helicase [Acinetobacter baumannii OIFC047]
gi|445467792|ref|ZP_21450758.1| replicative DNA helicase [Acinetobacter baumannii OIFC338]
gi|445483728|ref|ZP_21456498.1| replicative DNA helicase [Acinetobacter baumannii Naval-78]
gi|445492645|ref|ZP_21460592.1| replicative DNA helicase [Acinetobacter baumannii AA-014]
gi|169148428|emb|CAM86294.1| replicative DNA helicase;chromosome replication, chain elongation
[Acinetobacter baumannii AYE]
gi|183210291|gb|ACC57689.1| Replicative DNA helicase [Acinetobacter baumannii ACICU]
gi|213057719|gb|ACJ42621.1| replicative DNA helicase [Acinetobacter baumannii AB0057]
gi|213986488|gb|ACJ56787.1| replicative DNA helicase [Acinetobacter baumannii AB307-0294]
gi|260411105|gb|EEX04402.1| replicative DNA helicase [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|322507493|gb|ADX02947.1| dnaB [Acinetobacter baumannii 1656-2]
gi|323518611|gb|ADX92992.1| replicative DNA helicase [Acinetobacter baumannii TCDC-AB0715]
gi|332730573|gb|EGJ61889.1| replicative DNA helicase [Acinetobacter baumannii 6013150]
gi|332734334|gb|EGJ65461.1| replicative DNA helicase [Acinetobacter baumannii 6013113]
gi|332738077|gb|EGJ68961.1| replicative DNA helicase [Acinetobacter baumannii 6014059]
gi|333365383|gb|EGK47397.1| replicative DNA helicase [Acinetobacter baumannii AB210]
gi|342229413|gb|EGT94281.1| replicative DNA helicase [Acinetobacter baumannii ABNIH3]
gi|342230292|gb|EGT95133.1| replicative DNA helicase [Acinetobacter baumannii ABNIH2]
gi|342231419|gb|EGT96228.1| replicative DNA helicase [Acinetobacter baumannii ABNIH1]
gi|342239026|gb|EGU03443.1| replicative DNA helicase [Acinetobacter baumannii ABNIH4]
gi|347594267|gb|AEP06988.1| replicative DNA helicase,chromosome replication, chain elongation
[Acinetobacter baumannii MDR-ZJ06]
gi|385877883|gb|AFI94978.1| replicative DNA helicase [Acinetobacter baumannii MDR-TJ]
gi|395522746|gb|EJG10835.1| replicative DNA helicase [Acinetobacter baumannii OIFC137]
gi|395552387|gb|EJG18395.1| replicative DNA helicase [Acinetobacter baumannii OIFC143]
gi|395554154|gb|EJG20160.1| replicative DNA helicase [Acinetobacter baumannii OIFC189]
gi|395566139|gb|EJG27784.1| replicative DNA helicase [Acinetobacter baumannii OIFC109]
gi|395569044|gb|EJG29714.1| replicative DNA helicase [Acinetobacter baumannii Naval-17]
gi|398327785|gb|EJN43916.1| replicative DNA helicase [Acinetobacter baumannii AC12]
gi|400206932|gb|EJO37903.1| replicative DNA helicase [Acinetobacter baumannii IS-123]
gi|400210282|gb|EJO41252.1| replicative DNA helicase [Acinetobacter baumannii Canada BC-5]
gi|400387033|gb|EJP50106.1| replicative DNA helicase [Acinetobacter baumannii Naval-18]
gi|400392686|gb|EJP59732.1| replicative DNA helicase [Acinetobacter baumannii Naval-81]
gi|404562131|gb|EKA67355.1| replicative DNA helicase [Acinetobacter baumannii IS-116]
gi|404566653|gb|EKA71795.1| replicative DNA helicase [Acinetobacter baumannii WC-692]
gi|404568911|gb|EKA74006.1| replicative DNA helicase [Acinetobacter baumannii IS-143]
gi|404572044|gb|EKA77089.1| replicative DNA helicase [Acinetobacter baumannii IS-58]
gi|404665356|gb|EKB33319.1| replicative DNA helicase [Acinetobacter baumannii Ab11111]
gi|404670177|gb|EKB38069.1| replicative DNA helicase [Acinetobacter baumannii Ab33333]
gi|404674524|gb|EKB42268.1| replicative DNA helicase [Acinetobacter baumannii Ab44444]
gi|407190595|gb|EKE61811.1| replicative DNA helicase [Acinetobacter baumannii ZWS1122]
gi|407191350|gb|EKE62552.1| replicative DNA helicase [Acinetobacter baumannii ZWS1219]
gi|407901881|gb|AFU38712.1| replicative DNA helicase [Acinetobacter baumannii TYTH-1]
gi|408505290|gb|EKK07015.1| replicative DNA helicase [Acinetobacter baumannii IS-235]
gi|408507722|gb|EKK09416.1| replicative DNA helicase [Acinetobacter baumannii OIFC0162]
gi|408511831|gb|EKK13478.1| replicative DNA helicase [Acinetobacter baumannii Naval-72]
gi|408514989|gb|EKK16588.1| replicative DNA helicase [Acinetobacter baumannii IS-251]
gi|408694045|gb|EKL39633.1| replicative DNA helicase [Acinetobacter baumannii OIFC074]
gi|408695661|gb|EKL41216.1| replicative DNA helicase [Acinetobacter baumannii OIFC098]
gi|408699143|gb|EKL44623.1| replicative DNA helicase [Acinetobacter baumannii OIFC180]
gi|408706313|gb|EKL51637.1| replicative DNA helicase [Acinetobacter baumannii Naval-13]
gi|408706494|gb|EKL51812.1| replicative DNA helicase [Acinetobacter baumannii Naval-83]
gi|408712860|gb|EKL58043.1| replicative DNA helicase [Acinetobacter baumannii OIFC110]
gi|409985910|gb|EKO42112.1| replicative DNA helicase,chromosome replication, chain elongation
[Acinetobacter baumannii AC30]
gi|410380429|gb|EKP33015.1| replicative DNA helicase [Acinetobacter baumannii OIFC065]
gi|410390776|gb|EKP43156.1| replicative DNA helicase [Acinetobacter baumannii OIFC111]
gi|410398967|gb|EKP51170.1| replicative DNA helicase [Acinetobacter baumannii Naval-2]
gi|410401987|gb|EKP54122.1| replicative DNA helicase [Acinetobacter baumannii Naval-21]
gi|410404170|gb|EKP56243.1| replicative DNA helicase [Acinetobacter baumannii Canada BC1]
gi|410407757|gb|EKP59734.1| replicative DNA helicase [Acinetobacter baumannii Naval-82]
gi|410411914|gb|EKP63783.1| replicative DNA helicase [Acinetobacter baumannii WC-A-694]
gi|410417388|gb|EKP69158.1| replicative DNA helicase [Acinetobacter baumannii OIFC035]
gi|425487386|gb|EKU53744.1| replicative DNA helicase [Acinetobacter baumannii WC-348]
gi|425500289|gb|EKU66314.1| replicative DNA helicase [Acinetobacter baumannii Naval-113]
gi|444761738|gb|ELW86120.1| replicative DNA helicase [Acinetobacter baumannii WC-A-92]
gi|444763884|gb|ELW88220.1| replicative DNA helicase [Acinetobacter baumannii AA-014]
gi|444768296|gb|ELW92513.1| replicative DNA helicase [Acinetobacter baumannii Naval-78]
gi|444773232|gb|ELW97328.1| replicative DNA helicase [Acinetobacter baumannii OIFC047]
gi|444775971|gb|ELX00024.1| replicative DNA helicase [Acinetobacter baumannii OIFC338]
gi|444782043|gb|ELX05954.1| replicative DNA helicase [Acinetobacter baumannii Naval-57]
gi|452955960|gb|EME61354.1| replicative DNA helicase [Acinetobacter baumannii MSP4-16]
Length = 481
Score = 47.0 bits (110), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 53/264 (20%), Positives = 113/264 (42%), Gaps = 20/264 (7%)
Query: 443 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G+ G++TG+ L N+ + PG+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTSGMQPGDLIIVAARPSMGKTTFAMNLVESVLQYNKLPALV 264
Query: 502 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
SME A +L+ + H++ +A+ T+ + +Q ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQQMHLYIDDS--- 320
Query: 555 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTEVRARARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 615 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 671
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMNCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 672 PIDRVQVCVRKVRNKVVGTIGEAF 695
++ + K RN +GT+ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|421165875|ref|ZP_15624164.1| Putative DnaB-like replicative helicase [Pseudomonas aeruginosa
ATCC 700888]
gi|404539626|gb|EKA49075.1| Putative DnaB-like replicative helicase [Pseudomonas aeruginosa
ATCC 700888]
Length = 464
Score = 47.0 bits (110), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 122/294 (41%), Gaps = 38/294 (12%)
Query: 432 DYFDEIDAYYHRTSGDEFGISTGWRALNELY-NVLPGELTIVTGVPNSGKS-------EW 483
+ D ID ++R + G TG +L+ + PG + +V G P SGK+ E
Sbjct: 166 EAIDGIDRRFNREV--KLGYDTGLPSLDAFIPGICPGHMVVVAGEPGSGKTTLGLGFAER 223
Query: 484 IDALICNINEHAGWKFVL----CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE 539
+ AL CN F L + N+V + KHI + A+ S V
Sbjct: 224 V-ALACN---EPALVFSLEMTDVELANRVLSSVGSVPLKHIAEGHSMADSDWSGLTGAVN 279
Query: 540 EFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 599
+ N LI C++ SL +++ + + + HG+ G+V Y L +
Sbjct: 280 KL--------NHAPLILCDDASL-TLRDIRQICRTVKREHGL-GMVAVDYIGLVKGEQRN 329
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAH----PRQLHNWVGEPPNLYDISGSAHFINK 655
+ + V+++ +KR A+ V +A P+ N + P D+ S
Sbjct: 330 ASRYDVVTEISKGLKRLAKELGVPVVVLAQLNRGPKARGN---KRPTKSDLRDSGQIEAD 386
Query: 656 CDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDIV 709
D +++HR+++ +AG ++ V K R+ G +G A + + +++I+
Sbjct: 387 ADVVVLVHRDQESDAGKAGITELIVDKNRH---GQVGVAHVQHQGQFHRFVEII 437
>gi|359427665|ref|ZP_09218712.1| replicative DNA helicase [Acinetobacter sp. NBRC 100985]
gi|358236888|dbj|GAB00251.1| replicative DNA helicase [Acinetobacter sp. NBRC 100985]
Length = 481
Score = 47.0 bits (110), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 110/265 (41%), Gaps = 22/265 (8%)
Query: 443 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G+ G+STG+ L N+ Y + G+L IV P+ GK+ + L+ ++ + ++
Sbjct: 205 KMDGNITGLSTGFLELDNKTYGMQAGDLIIVAARPSMGKTTFAMNLVESVLFNCNLPALV 264
Query: 502 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE--- 558
SME A +L+ ++YG + G W T ++++ +
Sbjct: 265 YSMEMPADSIAMRLI----------SSYGKVHQGHLRSGKLDGDEWSKVTGTILQLQEKH 314
Query: 559 -----NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 613
+ +LP + + A + G G ++ Y +L + +S++ +
Sbjct: 315 LYIDDSSALPPTEVRSRARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSL 374
Query: 614 KRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEA 670
K A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 375 KALAKEMNCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKES 434
Query: 671 GPIDRVQVCVRKVRNKVVGTIGEAF 695
++ + K RN +GT+ AF
Sbjct: 435 KEAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|319788984|ref|YP_004150617.1| replicative DNA helicase [Thermovibrio ammonificans HB-1]
gi|317113486|gb|ADU95976.1| replicative DNA helicase [Thermovibrio ammonificans HB-1]
Length = 484
Score = 47.0 bits (110), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 110/261 (42%), Gaps = 26/261 (9%)
Query: 450 GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508
G+ +G+ L+++ + P +L I+ P+ GK+ + ++ N+ + G + S+E
Sbjct: 181 GLPSGFVELDKMTSGFQPSDLIILAARPSVGKTAFALSIAYNVAVNEGKSVAIFSLEMSK 240
Query: 509 REHARKLLEKHIKKPFFEANYGGSAERM------TVEEFEQGKAWLSNTFSLIRCENDSL 562
+ +L+ + K + G ER +V E+ ++ +T ++
Sbjct: 241 EQLVARLVAQDAKISLAKIRSGFLNEREMEKIHDSVSRIEEAPIYIDDTSNI-------- 292
Query: 563 PSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET--EYVSQMLTMVKRFAQHH 620
VLDL A +GL + + L R + +TE+ + VS++ +K A+
Sbjct: 293 ----SVLDLRAKAQRLKAEKGLDLIIVDYLQLMRGIRKTESRQQEVSEISRSLKILAKEL 348
Query: 621 ACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDR 675
V ++ RQ+ + + P L D+ S D + IHR + P+
Sbjct: 349 GVPVIALSQLSRQVEHRADKRPQLSDLRESGSIEQDADVVMFIHRPDLVKKKPDPEEEGI 408
Query: 676 VQVCVRKVRNKVVGTIGEAFL 696
++ + K RN GT+ AF+
Sbjct: 409 AEIIIAKQRNGPTGTVRLAFI 429
>gi|417544844|ref|ZP_12195930.1| replicative DNA helicase [Acinetobacter baumannii OIFC032]
gi|421667678|ref|ZP_16107740.1| replicative DNA helicase [Acinetobacter baumannii OIFC087]
gi|421669315|ref|ZP_16109342.1| replicative DNA helicase [Acinetobacter baumannii OIFC099]
gi|400382732|gb|EJP41410.1| replicative DNA helicase [Acinetobacter baumannii OIFC032]
gi|410383624|gb|EKP36152.1| replicative DNA helicase [Acinetobacter baumannii OIFC087]
gi|410389058|gb|EKP41480.1| replicative DNA helicase [Acinetobacter baumannii OIFC099]
Length = 481
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 53/264 (20%), Positives = 113/264 (42%), Gaps = 20/264 (7%)
Query: 443 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G+ G++TG+ L N+ + PG+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTSGMQPGDLIIVAARPSMGKTTFAMNLVESVLQYNKLPALV 264
Query: 502 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
SME A +L+ + H++ +A+ T+ + +Q ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQQMHLYIDDS--- 320
Query: 555 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTEVRARARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 615 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 671
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMNCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 672 PIDRVQVCVRKVRNKVVGTIGEAF 695
++ + K RN +GT+ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|260549411|ref|ZP_05823630.1| replicative DNA helicase;chromosome replication [Acinetobacter sp.
RUH2624]
gi|424055116|ref|ZP_17792639.1| replicative DNA helicase [Acinetobacter nosocomialis Ab22222]
gi|425742474|ref|ZP_18860583.1| replicative DNA helicase [Acinetobacter baumannii WC-487]
gi|445430831|ref|ZP_21438590.1| replicative DNA helicase [Acinetobacter baumannii OIFC021]
gi|260407520|gb|EEX00994.1| replicative DNA helicase;chromosome replication [Acinetobacter sp.
RUH2624]
gi|407439041|gb|EKF45583.1| replicative DNA helicase [Acinetobacter nosocomialis Ab22222]
gi|425486980|gb|EKU53340.1| replicative DNA helicase [Acinetobacter baumannii WC-487]
gi|444760459|gb|ELW84909.1| replicative DNA helicase [Acinetobacter baumannii OIFC021]
Length = 481
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 53/264 (20%), Positives = 113/264 (42%), Gaps = 20/264 (7%)
Query: 443 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G+ G++TG+ L N+ + PG+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTSGMQPGDLIIVAARPSMGKTTFAMNLVESVLQYNKLPALV 264
Query: 502 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
SME A +L+ + H++ +A+ T+ + +Q ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQQMHLYIDDS--- 320
Query: 555 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTEVRARARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 615 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 671
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMHCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 672 PIDRVQVCVRKVRNKVVGTIGEAF 695
++ + K RN +GT+ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|350568445|ref|ZP_08936847.1| replicative DNA helicase DnaB [Propionibacterium avidum ATCC 25577]
gi|348661665|gb|EGY78348.1| replicative DNA helicase DnaB [Propionibacterium avidum ATCC 25577]
Length = 448
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 130/317 (41%), Gaps = 43/317 (13%)
Query: 406 YLGPGALKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEF-GIS 452
Y G G + ++V+ A+ LY + DY FDE++A R GD GI
Sbjct: 136 YQGQGEVADIVDAAQQTLYDVSTRKTSEDYHPLSELFENTFDELEAIEAR--GDAMAGIP 193
Query: 453 TGWRALNELYN-VLPGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENKVR 509
TG+ L+EL N +PG++ IV P GKS +D A I H + S+E
Sbjct: 194 TGFTDLDELTNGFMPGQMIIVAARPAMGKSTLALDFARAAAIRNH--LAAAIFSLEMGRN 251
Query: 510 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVL 569
E +LL G R++ E++++ + S +DS P++ +
Sbjct: 252 EIVMRLLSAEAGIELQRMRSG----RLSEEDWQRMVDKTTQISSAPLFIDDS-PNLTMME 306
Query: 570 DLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 627
AKA ++ ++ +VID + + V + E VS+ +K A+ V +
Sbjct: 307 IRAKARRMKQKFDLKLVVIDYMQLMTSGKKVESRQLE-VSEFSRQIKLLAKELEIPVVAL 365
Query: 628 AH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQV 678
+ P Q ++ + P + D+ S D I++HR P AG D +
Sbjct: 366 SQLNRGPEQRND---KKPMMSDLRESGSLEQDADVVILLHREDVYDKESPRAGEAD---I 419
Query: 679 CVRKVRNKVVGTIGEAF 695
V K RN T+ F
Sbjct: 420 IVAKHRNGPTRTVPVVF 436
>gi|422389293|ref|ZP_16469390.1| replicative DNA helicase [Propionibacterium acnes HL103PA1]
gi|422462817|ref|ZP_16539437.1| replicative DNA helicase [Propionibacterium acnes HL060PA1]
gi|422565557|ref|ZP_16641205.1| replicative DNA helicase [Propionibacterium acnes HL082PA2]
gi|314965964|gb|EFT10063.1| replicative DNA helicase [Propionibacterium acnes HL082PA2]
gi|315095192|gb|EFT67168.1| replicative DNA helicase [Propionibacterium acnes HL060PA1]
gi|327328820|gb|EGE70580.1| replicative DNA helicase [Propionibacterium acnes HL103PA1]
Length = 448
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 127/316 (40%), Gaps = 41/316 (12%)
Query: 406 YLGPGALKEVVENA--------------ELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-G 450
Y G G + ++V+ A E +P+ LF FDE++A R GD G
Sbjct: 136 YQGQGEVADIVDAAQQTLYDVSTRKTSEEYHPLSELFE--STFDELEAIEAR--GDAMAG 191
Query: 451 ISTGWRALNELYN-VLPGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENK 507
I TG+ L+EL N +PG++ IV P GKS +D A I H + S+E
Sbjct: 192 IPTGFTDLDELTNGFMPGQMVIVAARPAMGKSTLALDFARAAAIKNH--LAAAIFSLEMG 249
Query: 508 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 567
E +LL G R++ E++++ + S +DS P++
Sbjct: 250 RNEIVMRLLSAEAGIELSRMRAG----RLSEEDWQRMVDKTTQISSAPLFIDDS-PNLTM 304
Query: 568 VLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 625
+ AKA ++ ++ ++ID + + V + E VS+ +K A+ V
Sbjct: 305 MEIRAKARRMKQKFDLKLIIIDYMQLMTSGKKVESRQLE-VSEFSRQIKLLAKELEIPVV 363
Query: 626 FVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVC 679
++ R + P + D+ S D I++HR P AG D +
Sbjct: 364 ALSQLNRGPEQRTDKKPMMSDLRESGSLEQDADVVILLHREDVYDKESPRAGEAD---II 420
Query: 680 VRKVRNKVVGTIGEAF 695
V K RN T+ F
Sbjct: 421 VAKHRNGPTRTVPVVF 436
>gi|422577244|ref|ZP_16652780.1| replicative DNA helicase [Propionibacterium acnes HL001PA1]
gi|314922008|gb|EFS85839.1| replicative DNA helicase [Propionibacterium acnes HL001PA1]
Length = 448
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 127/316 (40%), Gaps = 41/316 (12%)
Query: 406 YLGPGALKEVVENA--------------ELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-G 450
Y G G + ++V+ A E +P+ LF FDE++A R GD G
Sbjct: 136 YQGQGEVADIVDAAQQTLYDVSTRKTSEEYHPLSELFE--STFDELEAIEAR--GDAMAG 191
Query: 451 ISTGWRALNELYN-VLPGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENK 507
I TG+ L+EL N +PG++ IV P GKS +D A I H + S+E
Sbjct: 192 IPTGFTDLDELTNGFMPGQMVIVAARPAMGKSTLALDFARAAAIKNH--LAAAIFSLEMG 249
Query: 508 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 567
E +LL G R++ E++++ + S +DS P++
Sbjct: 250 RNEIVMRLLSAEAGIELSRMRAG----RLSEEDWQRMVDKTTQISSAPLFIDDS-PNLTM 304
Query: 568 VLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 625
+ AKA ++ ++ ++ID + + V + E VS+ +K A+ V
Sbjct: 305 MEIRAKARRMKQKFDLKLIIIDYMQLMTSGKKVESRQLE-VSEFSRQIKLLAKELEIPVV 363
Query: 626 FVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVC 679
++ R + P + D+ S D I++HR P AG D +
Sbjct: 364 ALSQLNRGPEQRTDKKPMMSDLRESGSLEQDADVVILLHREDVYDKESPRAGEAD---II 420
Query: 680 VRKVRNKVVGTIGEAF 695
V K RN T+ F
Sbjct: 421 VAKHRNGPTRTVPVVF 436
>gi|147678499|ref|YP_001212714.1| DNA primase [Pelotomaculum thermopropionicum SI]
gi|146274596|dbj|BAF60345.1| DNA primase [Pelotomaculum thermopropionicum SI]
Length = 315
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 25/136 (18%)
Query: 251 VIAFPYW-RNGKLVNCKYRDF-NKKFWQEKDTEKV---FYGLDDI--EGESDIIIVEGEM 303
+ FP++ R G+LVN K+R +K+FW D + V Y L+ I G+ +VE E+
Sbjct: 157 AVTFPWYDRQGRLVNVKFRSVTDKRFWFYGDGQPVGDHVYALNFIYKAGKRLAYVVESEI 216
Query: 304 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 363
D +++ +AGF ++ N+ +++ Q C +++ATD
Sbjct: 217 DAITLWQAGFPAV---------ALGGANLSPRQRELIIQSPLEC---------LVVATDN 258
Query: 364 DPPGQALAEELARRVG 379
D G+ +A +A ++G
Sbjct: 259 DKAGRRIARTIAGQLG 274
>gi|415883886|ref|ZP_11545915.1| replicative DNA helicase [Bacillus methanolicus MGA3]
gi|387591681|gb|EIJ83998.1| replicative DNA helicase [Bacillus methanolicus MGA3]
Length = 454
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 143/354 (40%), Gaps = 32/354 (9%)
Query: 366 PGQALAEELARRVGRERCWR--VRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYP 423
P A E AR V + R +R D + +EV L A K ++E A+
Sbjct: 97 PTAANIEYYARIVEEKSLLRRLIRTATAIAQDGYTREDEVDAVLEE-AEKRILEVAQRKN 155
Query: 424 IMGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNS 478
N +D +D I+ ++R GD G+ TG+R L+++ +L IV P+
Sbjct: 156 AGTFHNIKDVLVRTYDNIEMLHNR-KGDITGLETGFRELDKMTAGFQRNDLIIVAARPSV 214
Query: 479 GKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERM-T 537
GK+ + + N+ G + S+E + ++L E N R T
Sbjct: 215 GKTAFALNIAQNVATKTGENIAIFSLEMGAEQLVMRML-------CAEGNINSQRLRTGT 267
Query: 538 VEEFEQGK-----AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYN 590
+ + + GK LSN I D P I+ +K L+ HG+ +VID
Sbjct: 268 LTDEDWGKLTMAMGSLSNAGIFI----DDTPGIRISEIRSKCRRLKQEHGLGMVVIDYLQ 323
Query: 591 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGS 649
+ + + VS++ +K A+ V ++ R + + P + DI S
Sbjct: 324 LIQGSGRPGENRQQEVSEISRSLKELARELEVPVIALSQLSRGVEQRQDKRPMMSDIRES 383
Query: 650 AHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL-SYNR 700
D ++R+ + E+ D +++ + K RN VGT+ AF+ YN+
Sbjct: 384 GSIEQDADIVAFLYRDDYYNKESENKDIIEIIIAKQRNGPVGTVELAFIKEYNK 437
>gi|306817512|ref|ZP_07451256.1| replicative DNA helicase DnaB [Mobiluncus mulieris ATCC 35239]
gi|307699799|ref|ZP_07636850.1| replicative DNA helicase [Mobiluncus mulieris FB024-16]
gi|304649736|gb|EFM47017.1| replicative DNA helicase DnaB [Mobiluncus mulieris ATCC 35239]
gi|307614837|gb|EFN94055.1| replicative DNA helicase [Mobiluncus mulieris FB024-16]
Length = 458
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 116/287 (40%), Gaps = 37/287 (12%)
Query: 430 FRDYFDEIDAYYHRTSGDEFGISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEW-IDAL 487
+D ++ T D + TG+R + E+ + PG++ IV P GKS + +D
Sbjct: 164 LKDLIPQVTTEISNTEPDPNMVRTGFRDFDTEIQGLRPGQMIIVAARPGMGKSTFSLD-- 221
Query: 488 ICNINE-HAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA 546
IC H + S+E E ++L+ P N G S+ T Q +A
Sbjct: 222 ICRYAAIHENKTAAIFSLEMSYAEIIKRLISAEASVPLSAINAGVSSADGT-----QSQA 276
Query: 547 WLSNT-----------FSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELD 593
+ +N + N ++P I+ AK L+ H + V+D Y +L
Sbjct: 277 YWTNIANATNRMFEKPLYIDDSVNLTMPEIR-----AKCRRLKYNHDLSIAVVD-YLQLM 330
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHF 652
R +++ + VS++ +K A+ + VA R + + P + D+ S
Sbjct: 331 KGRGSAESRQQEVSEISRSLKLLAKELEIPIIAVAQLNRGPESRTDKKPMMSDLRESGSL 390
Query: 653 INKCDNGIVIHRNRDPEA-GPIDR---VQVCVRKVRNKVVGTIGEAF 695
D +++HR PEA P DR + V K RN GT+ F
Sbjct: 391 EQDADMVLLLHR---PEAYNPDDRPGEADLYVAKHRNGRTGTVHLTF 434
>gi|164688035|ref|ZP_02212063.1| hypothetical protein CLOBAR_01680 [Clostridium bartlettii DSM
16795]
gi|164602448|gb|EDQ95913.1| hypothetical protein CLOBAR_01680 [Clostridium bartlettii DSM
16795]
Length = 363
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 99/229 (43%), Gaps = 19/229 (8%)
Query: 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF-- 524
G LT++TG P SGKS ++ ++ N G+ L S E + A K + P
Sbjct: 111 GTLTVLTGSPGSGKSTFLKQILANA-LSLGFNSFLYSGE-LTAQMALDWFYKTVSNPIHL 168
Query: 525 -FEANYGGSAERMTVEEFEQGKAWL-SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR 582
F N G ++T E Q WL F + +I V++ ++ V+
Sbjct: 169 SFGVNSFGKTIKVTEEGVSQINKWLRGKLFLFSKNAQADETNISTVIEF---LAVKKNVK 225
Query: 583 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN 642
V+D ++ R + E + ++ +K A+++ + VAH + ++ + P+
Sbjct: 226 LFVLDNLMTIEC-RGTDKYEKQI--NVIKSLKNLAKNYNIVIILVAHSNK-NSIMRSEPH 281
Query: 643 LYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI 691
++DISG++ N D + R+ D + + + ++N++ G I
Sbjct: 282 VFDISGASEIANLSDYILTATRDNDRDN------ETTILLLKNRITGLI 324
>gi|164688684|ref|ZP_02212712.1| hypothetical protein CLOBAR_02330 [Clostridium bartlettii DSM
16795]
gi|164602160|gb|EDQ95625.1| replicative DNA helicase [Clostridium bartlettii DSM 16795]
Length = 435
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 112/251 (44%), Gaps = 28/251 (11%)
Query: 450 GISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507
GI TG+ L+ L + G LT++TG P +GKS +++ +I N + G+ L S E
Sbjct: 165 GILTGFAGLDALLGDGLNFGTLTVLTGSPGAGKSTFLNQIIANAISN-GFNSFLYSGE-L 222
Query: 508 VREHARKLLEKHIKKPFFEANYG---GSAERMTVEEFEQGKAWLSNTFSLIRCENDS-LP 563
E + + P NY G +++ E E W+ + E +
Sbjct: 223 TYEMCMDWFTRTVANPQHLLNYTSNMGKYAKVSDEGLEMITQWVDDKLFFYSKEAKADEA 282
Query: 564 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM--VKRFAQHHA 621
+I ++ + V+ V+D LD +Y Q++ + +KR A+ +
Sbjct: 283 NISHAIEYLAT---KKNVKLFVLDNLMTLD-----CSGNDKYEKQIIAVKSLKRLAKKYK 334
Query: 622 CHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-NRDPEAGPIDRVQVCV 680
+ VAH + ++ + + P++++ISG++ N D + R R+PE ++ V
Sbjct: 335 IVIVLVAHSNK-NSMMNKEPHVFEISGASEIPNLADYVLKASREGREPET------ELFV 387
Query: 681 RKVRNKVVGTI 691
++N++ G+I
Sbjct: 388 --LKNRITGSI 396
>gi|82703068|ref|YP_412634.1| replicative DNA helicase [Nitrosospira multiformis ATCC 25196]
gi|82411133|gb|ABB75242.1| primary replicative DNA helicase [Nitrosospira multiformis ATCC
25196]
Length = 470
Score = 46.6 bits (109), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 119/289 (41%), Gaps = 30/289 (10%)
Query: 430 FRDYFDEIDAYYHR-TSGDEFGISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDAL 487
++ + I+ Y++ D GI+TG+ L+E PG+L IV G P+ GK+ A
Sbjct: 187 LKEVVERIETLYNQDNQSDVTGIATGFHDLDEKTSGFQPGDLVIVAGRPSMGKT----AF 242
Query: 488 ICNINEHAGWKF----VLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 543
NI EH + SME + A ++L K + G R+ E++ +
Sbjct: 243 SLNIAEHVALTLQKPVAVFSMEMGGAQLAMRMLGSVGKLDQHKVRTG----RLLDEDWSR 298
Query: 544 GKAWLS--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 601
L N L E+ +L +++ A+ +HG GL++ Y +L +
Sbjct: 299 LTHALGKLNDAPLFIDESAALNALELRA-RARRLHRQHGELGLIVVDYLQLMSAAGQGEN 357
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAHP---RQLHNWVGEPPNLYDISGSAHFINKCDN 658
+S++ +K A+ HV VA R L + P + D+ S D
Sbjct: 358 RATEISEISRSLKALAKE--LHVPVVALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADL 415
Query: 659 GIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
+ I+R+ +PE ++ + K RN +G + FL GEY
Sbjct: 416 ILFIYRDEVYNPETPDKGIAEIIIGKQRNGPIGKVDLTFL------GEY 458
>gi|402818216|ref|ZP_10867801.1| replicative DNA helicase [Paenibacillus alvei DSM 29]
gi|402504307|gb|EJW14837.1| replicative DNA helicase [Paenibacillus alvei DSM 29]
Length = 427
Score = 46.6 bits (109), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 120/283 (42%), Gaps = 30/283 (10%)
Query: 429 NFRDYFDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDA 486
F+DY ++ Y + SG+ TG++ +++ + + L ++ P +GK+
Sbjct: 150 TFKDYL--LEYYEDKLSGEIKNTPLTGFQDIDKWMQGIGDNRLIVLAARPGTGKTAIALQ 207
Query: 487 LICNINEHAGWKF-VLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTV------- 538
++ NI + + V S+E +E +L+ A+ GG +M +
Sbjct: 208 ILRNIAKQKEFGVPVFFSLEMARKELTDRLV----------ASIGGLNAKMVMRNEFNDE 257
Query: 539 --EEFEQG-KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG-VRGLVIDPYNELDH 594
E F + A S TF + ++ S ++ ++ A +HG + + ID +D
Sbjct: 258 QRERFAKAVDALRSMTFHI---DDRSRINVNYIKRKCLALKRKHGKLSCIFIDYLGLIDM 314
Query: 595 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFIN 654
Q ++ E ++++ +K FA C ++ +A + PP + D+ GS
Sbjct: 315 QTGKNEAPHEAIARVTRELKIFASEIGCSIFLLAQLNRASEREKRPPIMSDLRGSGAIEQ 374
Query: 655 KCDNGIVIHRNRDPEAGPID-RVQVCVRKVRNKVVGTIGEAFL 696
D I ++ + + + I+ +V V K R +GT G F+
Sbjct: 375 DADMIIFLYDHDENDKEKIETKVDFIVAKGRQTGIGTFGLTFV 417
>gi|422881109|ref|ZP_16927565.1| DNA replication protein DnaC [Streptococcus sanguinis SK355]
gi|332365066|gb|EGJ42831.1| DNA replication protein DnaC [Streptococcus sanguinis SK355]
Length = 451
Score = 46.6 bits (109), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 143/347 (41%), Gaps = 33/347 (9%)
Query: 366 PGQALAEELARRVGRERCWRVRWPKKND-VDHFKDANEVLMYLGPGALKEVVENAELYPI 424
P A AE A+ V + R + + ++ D + + + GA K +++ +E
Sbjct: 97 PTSANAEYYAKIVAEKAILRRLISRLTESINQAYDGDRLSEEIIAGAEKALIDVSETANR 156
Query: 425 MGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSG 479
G N RD F ++A +TS D GI+TG+R L+++ L EL I+ P G
Sbjct: 157 SGFKNIRDVLNLNFSNLEARSLQTS-DITGIATGYRELDKMTTGLHEEELIILAARPAVG 215
Query: 480 KSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE 539
K+ A NI ++ G K + A L+++ + ++ ++T E
Sbjct: 216 KT----AFALNIAQNIGTKLDKTVAIFSLEMGAESLVDRMLASEGVINSHSIRTGQLTDE 271
Query: 540 EFEQ---GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNEL-- 592
E+++ A L+N I D P I+ ++A L G GLV+ Y +L
Sbjct: 272 EWQKYTIATANLANASIYI----DDTPGIRITEIRSRARKLAQETGNLGLVLIDYLQLIT 327
Query: 593 DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAH 651
R Q E +S+ L K A+ V ++ R + + P L DI S
Sbjct: 328 GTGRENRQQEVSEISRQL---KILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGS 384
Query: 652 FINKCDNGIVIHRN-------RDPEAGPIDRVQVCVRKVRNKVVGTI 691
D ++R+ + E P ++V+V + K R+ GT+
Sbjct: 385 IEQDADIVAFLYRDDYYDRAGEEEEGIPNNKVEVIIEKNRSGARGTV 431
>gi|224052721|ref|XP_002193128.1| PREDICTED: twinkle protein, mitochondrial-like, partial
[Taeniopygia guttata]
Length = 495
Score = 46.6 bits (109), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 120/294 (40%), Gaps = 45/294 (15%)
Query: 220 NELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW-------RNGKLVNCKYRDFNK 272
E +A F ++ TL+R V R +V FP++ + KL+ + +
Sbjct: 134 KETKALFGISQVTDATLKRFGVRYLRTARSLV--FPWFSPQDASLKGLKLLRVEKKGGTI 191
Query: 273 KFWQEK----DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSV 327
+ +E D+ + +GL I ++++++ E+D L++ +A + +++P GA S +
Sbjct: 192 TYVEETLPRFDSYRNLFGLPLIGRRDTELVLTGWELDALALHQAAGVASLALPRGA-SCL 250
Query: 328 SKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 387
+P YL+Q RI L D A+ AR++ +RC VR
Sbjct: 251 PPTLLP----------------YLEQFKRITLWLGEDLRSWEAAKLFARKLSLKRCSLVR 294
Query: 388 WPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGD 447
P + N+ L + +++ +A L + +FR +E+ +
Sbjct: 295 -PGNLQPRPLEALNQGL------NVTKILRSALLASHKSIISFRQLREEV---FGELVNT 344
Query: 448 EFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGW 497
E W EL +L G ELTI TG SGK+ +I ++ W
Sbjct: 345 EQVSGVKWARFPELNKLLKGHRRGELTIFTGPTGSGKTTFISEYALDLCRLGVW 398
>gi|387220087|gb|AFJ69752.1| hypothetical protein NGATSA_3048200, partial [Nannochloropsis
gaditana CCMP526]
Length = 142
Score = 46.2 bits (108), Expect = 0.054, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 18/134 (13%)
Query: 362 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 421
D D PG AE+ A ++G R + VR D+D KDAN+ L L L+ +++NA+
Sbjct: 2 DNDTPGIEGAEKFANKLGARRTFIVR-ALPEDLDPPKDANDAL--LRNLNLERMIQNAQR 58
Query: 422 YPIMGLFNFRDY----FDEIDAYYHRTSGDEFGIST----GWRALNELYNVLPGELTIVT 473
P + F D FDE+ R G+S G AL L GE+T++T
Sbjct: 59 LPDTRVIRFSDLRPLVFDEL-----RNRDKHEGVSAKSFPGLMAL--LKGFRKGEMTVLT 111
Query: 474 GVPNSGKSEWIDAL 487
G +GK+ ++ L
Sbjct: 112 GPTGAGKTTFLSQL 125
>gi|320156438|ref|YP_004188817.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
gi|319931750|gb|ADV86614.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
Length = 544
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 117/495 (23%), Positives = 186/495 (37%), Gaps = 67/495 (13%)
Query: 144 CPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMK 203
CPKC D+ L +DG + CF C + DN R ++ K
Sbjct: 13 CPKCGSKDN------LARYDDGHA---HCFTNGCDY---FEPATDNQRPPKQKQQAKPKK 60
Query: 204 TIREITEDSLELEPLGNELRAYFAERLISAETLRR-NRVMQKRHGHEVV----IAFPYWR 258
+E T E+ PL +R I +T ++ + K G E V + P R
Sbjct: 61 ERKEFTPIEGEVRPL--------TKRGIREDTCKKYGYKVGKLSGGEWVQYIDVRDPLTR 112
Query: 259 NGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSME--EAGFLNC 316
+LV K R NK+F + G G +II EGE+D L++ ++
Sbjct: 113 --QLVAQKIRTENKQFLVKGTLTGELIGAHLFSGGKKLIITEGEIDMLTVSQVQSNKYPV 170
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
VS+P+G S +KK + N YL IIL D D G+ A E A
Sbjct: 171 VSLPNGISS--AKKAI------------MNNLDYLSNFEEIILCFDMDEVGREGAVEAAE 216
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 436
+ + P KD NE+L+ L + NA+ + GL D +
Sbjct: 217 LLIDHNVKIMSLP-------LKDPNEMLLAGRTEELINAIWNAQEHRPDGLLPVEDLVEA 269
Query: 437 IDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHA 495
+ G+ ++ +N+ N GE+ + GK++++ A H
Sbjct: 270 ALKPLPK------GLPWIYQGMNDSSNGRHFGEIHTIGAGTGVGKTDFLCAQADFDIRHL 323
Query: 496 GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLI 555
K L MEN E + L K K+ ++EA G +++ VE Q KA+ T
Sbjct: 324 HQKVGLFFMENDPTEILQYLGGKADKRLYYEA---GHPDQLDVE--AQRKAYKKYTGRCF 378
Query: 556 RCENDSLPSIKWV-LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
+N L W + + ++ G R ID L + E + + ++ +
Sbjct: 379 IYDNFGL--CDWSKVKIKILYLIGRGYRIFYIDHLTAL--ATGGDKDEKKELEDIMADIA 434
Query: 615 RFAQHHACHVWFVAH 629
FA+ H V+H
Sbjct: 435 TFAKRHNVLFHLVSH 449
>gi|51894449|ref|YP_077140.1| replicative DNA helicase [Symbiobacterium thermophilum IAM 14863]
gi|51858138|dbj|BAD42296.1| replicative DNA helicase [Symbiobacterium thermophilum IAM 14863]
Length = 446
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 116/283 (40%), Gaps = 28/283 (9%)
Query: 426 GLFNFRDYFDEIDAYYH-----RTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSG 479
G + RD + AY H T G G+ +G+R L+ + + P +L IV P+ G
Sbjct: 156 GYLHIRDAL--VTAYGHLEHLYSTKGRTTGVPSGYRDLDAMTSGFQPSDLIIVAARPSVG 213
Query: 480 KSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE 539
K+ + + N A K + S+E + A +LL EA G R T +
Sbjct: 214 KTAFTLNIARNAAVQAKAKVIFFSLEMSAEQLALRLLAS-------EATVDGHKLR-TGQ 265
Query: 540 EFEQGKAWLSNTFSLIRCEN---DSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDH 594
+Q L S++ + D P+I AKA L HG+ +++D Y +L
Sbjct: 266 LQDQDWHKLGTALSVLGESDIYIDDTPNIPLQEMRAKARRLAQEHGLDLIIVD-YLQLMS 324
Query: 595 --QRPVSQT-ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSA 650
QRP Q + +S++ +K A+ + ++ R + + P L D+ S
Sbjct: 325 LPQRPGQQANRQQEISEISRSLKALARELKVPIIALSQLSRSVEQRQDKRPMLSDLRESG 384
Query: 651 HFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTI 691
D ++R D D V+V + K RN +GT+
Sbjct: 385 ALEQDADVVAFLYREDYYDQNTDKKDIVEVILAKHRNGPIGTV 427
>gi|296392719|ref|YP_003657603.1| replicative DNA helicase [Segniliparus rotundus DSM 44985]
gi|296179866|gb|ADG96772.1| replicative DNA helicase [Segniliparus rotundus DSM 44985]
Length = 485
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 103/252 (40%), Gaps = 16/252 (6%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
DEID+ R G G+ TG+ L+++ N PG++ IV P GKS + + +
Sbjct: 212 MDEIDSIASR-GGISLGVPTGFADLDKVTNGFHPGQMIIVAARPGVGKSTLALDFLRSCS 270
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 552
G L S+E E KLL + + G RM+ +++ + +S
Sbjct: 271 VQNGLASALFSLEMSKMEIVMKLLSAEARIRLADMRSG----RMSDDDWSRLARRMSQIS 326
Query: 553 SLIRCENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 610
+DS P++ + AKA L RH ++ +V+D + + V + E VS+
Sbjct: 327 EAPLFIDDS-PNLTIMEIRAKARRLKQRHDLKLVVVDYLQLMTSGKKVESRQQE-VSEFS 384
Query: 611 TMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----- 664
+K A+ V ++ R + P + D+ S D I++HR
Sbjct: 385 RQLKLLAKELEVPVVALSQLNRGPEQRTDKRPMVSDLRESGSLEQDADMVILVHRPDAIE 444
Query: 665 NRDPEAGPIDRV 676
DP G D +
Sbjct: 445 PDDPRGGEADLI 456
>gi|227876550|ref|ZP_03994661.1| primary replicative DNA helicase [Mobiluncus mulieris ATCC 35243]
gi|269977752|ref|ZP_06184712.1| replicative DNA helicase [Mobiluncus mulieris 28-1]
gi|227842864|gb|EEJ53062.1| primary replicative DNA helicase [Mobiluncus mulieris ATCC 35243]
gi|269934056|gb|EEZ90630.1| replicative DNA helicase [Mobiluncus mulieris 28-1]
Length = 458
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 116/287 (40%), Gaps = 37/287 (12%)
Query: 430 FRDYFDEIDAYYHRTSGDEFGISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEW-IDAL 487
+D ++ T D + TG+R + E+ + PG++ IV P GKS + +D
Sbjct: 164 LKDLIPQVTTEISNTEPDPNMVRTGFRDFDTEIQGLRPGQMIIVAARPGMGKSTFSLD-- 221
Query: 488 ICNINE-HAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA 546
IC H + S+E E ++L+ P N G S+ T Q +A
Sbjct: 222 ICRYAAIHENKTAAIFSLEMSYAEIIKRLISAEASVPLSAINAGVSSADGT-----QSQA 276
Query: 547 WLSNT-----------FSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELD 593
+ +N + N ++P I+ AK L+ H + V+D Y +L
Sbjct: 277 YWTNIANATNRMFEKPLYIDDSVNLTMPEIR-----AKCRRLKYNHDLSIAVVD-YLQLM 330
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHF 652
R +++ + VS++ +K A+ + VA R + + P + D+ S
Sbjct: 331 KGRGSAESRQQEVSEISRSLKLLAKELEIPIIAVAQLNRGPESRTDKKPMMSDLRESGSL 390
Query: 653 INKCDNGIVIHRNRDPEA-GPIDR---VQVCVRKVRNKVVGTIGEAF 695
D +++HR PEA P DR + V K RN GT+ F
Sbjct: 391 EQDADMVLLLHR---PEAYNPDDRPGEADLYVAKHRNGRTGTVHLTF 434
>gi|386773808|ref|ZP_10096186.1| primary replicative DNA helicase [Brachybacterium paraconglomeratum
LC44]
Length = 458
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 109/277 (39%), Gaps = 31/277 (11%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
+ I+A +R G G+ TG+ L+EL L G++ I G P GK+ ++ + +
Sbjct: 180 LNAIEATQNR-GGQVTGVPTGFAELDELTQGLHGGQMIIFAGRPAMGKTTLGMDVLRSAS 238
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 552
H G V+ S+E E +LL + P G +R W S
Sbjct: 239 IHNGQTSVIFSLEMDKTEITMRLLSAESQVPMNRMRDGSMDDR----------DWQSMAR 288
Query: 553 SLIRCENDSLPSIKWVLDLAKAAVL-----------RHGVRGLVIDPYNELDHQRPVSQT 601
++ R + L ++ D A +++ +H +R +VID + + V
Sbjct: 289 AMSRIADAPL----FMDDSANMSLMEIRAKCRRLKQKHDLRLVVIDYLQLMSSGKKVESR 344
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 660
+ E VS+ +K A+ C V ++ R + P + D+ S D +
Sbjct: 345 QQE-VSEFSRALKLLAKEIDCPVIAISQLNRGSEQRTDKTPMMSDLRESGSIEQDADVIL 403
Query: 661 VIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+IHR + E+ + V K RN TI AF
Sbjct: 404 LIHREDYYEKESARAGEADLIVAKHRNGATKTIPVAF 440
>gi|21234366|ref|NP_640276.1| DNA primase [Vibrio phage VpV262]
gi|21064879|gb|AAM28363.1| DNA primase [Vibrio phage VpV262]
Length = 287
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 127 LGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSAL 186
L + C + ++CP C GGDS E SL ++ DG + + C+R KCG G
Sbjct: 11 LDMTTDLCIGERSDHLVCPCCRGGDSGERSLLVWCHADGLA--YRCYRVKCGLSGKI--- 65
Query: 187 VDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL--ISAETLRRNRVM 242
QS + S + L EPL N++ ++ + A+ LR N V+
Sbjct: 66 -----GQSGYRPVSTKMRKPKCHTRQLHPEPLPNDVLDWYLDYFWWADAKMLRVNGVL 118
>gi|89101208|ref|ZP_01174037.1| replicative DNA helicase [Bacillus sp. NRRL B-14911]
gi|89084076|gb|EAR63248.1| replicative DNA helicase [Bacillus sp. NRRL B-14911]
Length = 454
Score = 46.2 bits (108), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 80/353 (22%), Positives = 141/353 (39%), Gaps = 24/353 (6%)
Query: 363 GDPPGQALAEELARRVGRERCWR--VRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 420
G P A E AR V + R +R D + +EV + LG A K ++E A+
Sbjct: 94 GSVPTAANIEYYARIVEEKSLLRRLIRTATGIAQDGYSREDEVEVLLGE-AEKNILEVAQ 152
Query: 421 LYPIMGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGV 475
N +D +D I+ ++R GD GI TG+ L+++ +L IV
Sbjct: 153 RKNAGAFHNIKDVLVRTYDNIEVMHNR-KGDITGIPTGFAELDKMTAGFQRNDLIIVGAR 211
Query: 476 PNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLL--EKHIKKPFFEANYGGSA 533
P+ GK+ + + N+ + S+E + ++L E +I GS
Sbjct: 212 PSVGKTAFALNIAQNVATKTNENIAIFSLEMGAEQLVMRMLCAEGNIDAQRLRT---GSL 268
Query: 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNE 591
+ LSN I D P ++ +K L+ HG+ ++ID
Sbjct: 269 TDDDWGKLTMAMGSLSNAGIFI----DDTPGVRITEIRSKCRRLKQEHGLGMILIDYLQL 324
Query: 592 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSA 650
+ + + VS++ +K A+ V ++ R + + P + DI S
Sbjct: 325 ILGSGRSGENRQQEVSEISRSLKALARELQVPVIALSQLSRGVEQRQDKRPMMSDIRESG 384
Query: 651 HFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL-SYNR 700
D ++R+ D E+ + +++ + K RN VGT+ AF+ YN+
Sbjct: 385 SIEQDADIVAFLYRDDYYDKESEDKNIIEIIIAKQRNGPVGTVQLAFVKEYNK 437
>gi|406984621|gb|EKE05567.1| DNA primase, partial [uncultured bacterium]
Length = 493
Score = 46.2 bits (108), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 79/349 (22%), Positives = 134/349 (38%), Gaps = 54/349 (15%)
Query: 144 CPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMK 203
CPKC ++ L L DG C + +G +V + Q + +K
Sbjct: 10 CPKCRNNGRDKSGNHLILFSDGSKYCNRCHYS----EGKKENMVTSCEVQKEYGFITDIK 65
Query: 204 TIREITEDSLELEPLGNELRAYFAERLISAETLRRNRV---MQKRHGHEVVIAFPYWRNG 260
+ E+ +E +R I AE + + V +G V +P +NG
Sbjct: 66 EVNELPSGIME-------------DRKIRAEIVEKFNVKLEYDPTNGSVVKHYYPITKNG 112
Query: 261 KLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGES-------DIIIVEGEMDKLSMEEAGF 313
K R+ K F D + G D+ G+S ++IV GE+D L+ +
Sbjct: 113 VTTAYKVRELPKTFASIGDAK----GKTDLFGQSVTPKGGKKLLIVGGELDCLAAYQ--- 165
Query: 314 LNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEE 373
+ P+ PS VS +P E T + + ++ +++ TD D G+ A+
Sbjct: 166 MLITKYPNFPPSVVS---LPKGENITAVKDNID---FVNSFQEVLIYTDMDTVGRTTADS 219
Query: 374 LARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDY 433
+A+ +G + + ++ KDA+++L+ NAE G+ +D
Sbjct: 220 IAKLIG----VKAKVVSTSE----KDASDMLVAGKSAEFINAFFNAEGRKPEGIVAGKDI 271
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKS 481
E + G T + ALN + L GELT +T GKS
Sbjct: 272 SIE-----RLKKATQHGFKTQYTALNNMIGGLRKGELTTLTAGSGIGKS 315
>gi|307213491|gb|EFN88900.1| Twinkle protein, mitochondrial [Harpegnathos saltator]
Length = 479
Score = 46.2 bits (108), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 80/366 (21%), Positives = 142/366 (38%), Gaps = 46/366 (12%)
Query: 351 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVR---WPKKNDVDHFKDANEVLMYL 407
L+ ++IL D P A++ A+++ +RC VR + + KD N
Sbjct: 128 LENFKKLILWFGNDEPSWYTAKQFAKKLNEKRCSFVRPIGTQPRPKLAADKDYN------ 181
Query: 408 GPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYH---RTSGDEFGISTGWRALNELYNV 464
LK ++ NA+ + F D +I R G W+ L
Sbjct: 182 ----LKNILTNAQPIWHKSITTFDDLRQDILCDLQNIDRVQG------VKWKRYPTLNRT 231
Query: 465 LPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI 520
L G ELTI+TG GK+ ++ ++ G + S E + A+ +L++ I
Sbjct: 232 LKGHRRGELTILTGPTGCGKTTFMSEYSLDL-AMQGVNTLWGSFEIRNARLAKTMLQQMI 290
Query: 521 KKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG 580
+ E +++F A + N + SIK V+D + A H
Sbjct: 291 EVSLEE----------NLDQFNT-YADVFNKLPIYFMTFHGQQSIKIVMDAVQHATYVHD 339
Query: 581 VRGLVIDPYNELDHQRPVSQTETEYVS-QMLTMVKRFAQHHACHVWFVAHPRQLHNWVGE 639
+ ++ID + S+T + +++ + FA + CHV V HPR+ + E
Sbjct: 340 IAHVIIDNMQFMMGVSEDSKTNRFWKQDKIIEEFRNFATKYNCHVTLVIHPRKERD--DE 397
Query: 640 PPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYN 699
N I GSA + DN ++I R +Q+ +N+ G +G + ++
Sbjct: 398 LTN-SSIFGSAKASQEADNVLIIQDKRLTNIRGKKYLQI----TKNRYSGDLGIMIMEFD 452
Query: 700 RVTGEY 705
+ Y
Sbjct: 453 KTKLSY 458
>gi|225873016|ref|YP_002754475.1| replicative DNA helicase [Acidobacterium capsulatum ATCC 51196]
gi|225791594|gb|ACO31684.1| replicative DNA helicase [Acidobacterium capsulatum ATCC 51196]
Length = 467
Score = 46.2 bits (108), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 130/335 (38%), Gaps = 48/335 (14%)
Query: 394 VDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNF-RDYFDEIDAYYHRTSGDEF-GI 451
D +DA +VL GAL +V E + + RD F ID Y G E G+
Sbjct: 133 ADQSEDALDVL-NAAEGALLQVTERSISQGFASIPEIVRDSFGTIDNLYKE--GREVTGL 189
Query: 452 STGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 510
+T + +++ + L EL I+ P+ GK+ W + N G + S+E
Sbjct: 190 ATHFEEFDKMTSGLQDSELIIIAARPSMGKTAWAINIAQNAAVKGGKVVAVFSLEMSKES 249
Query: 511 HARKLL-------EKHIKKPFFEANYGGSAERMT--VEEFEQGKAWLSNTFSLIRCENDS 561
R++L + I+K F E++T +E + + ++ +T
Sbjct: 250 LLRRMLASEAMVDSQKIQKGFLLRE---DQEKLTMALERLAESRMFIDDT---------- 296
Query: 562 LPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVS-------QTETEYVSQMLTM 612
P I AKA LR G L++ Y +L P + T+ VS +
Sbjct: 297 -PGISLSEMRAKARRLRQQQGTLDLIVIDYLQLMTGTPPGGSGAKRYENRTQEVSAISRG 355
Query: 613 VKRFAQHHACHVWFVAHPRQLHNWVG--EPPNLYDISGSAHFINKCDNGIVIHR----NR 666
+K A+ V ++ + G + P L D+ S D IHR NR
Sbjct: 356 LKALAKELKVPVIALSQLSRASEQRGGDKKPMLSDLRESGSIEQDADVVAFIHREAYYNR 415
Query: 667 D----PEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 697
D P+ + ++ + K RN G++ A+LS
Sbjct: 416 DENGQPDPETEGKAEIIIAKQRNGPTGSVQLAYLS 450
>gi|258512882|ref|YP_003186316.1| replicative DNA helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257479608|gb|ACV59927.1| replicative DNA helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 459
Score = 46.2 bits (108), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 114/270 (42%), Gaps = 14/270 (5%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
F+ I+ Y + G+ G+ TG+ L+ + + +L IV P+ GK+ + + N+
Sbjct: 181 FERIEQLYE-SDGNITGVPTGYSDLDRMTSGFQKSDLIIVAARPSVGKTAFALNIAQNVA 239
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN--YGGSAERMTVEEFEQGKAWLSN 550
AG + S+E + +++L + F + + G+ + + G LSN
Sbjct: 240 VRAGLPVAIFSLEMSKDQLVQRML---CAEAFIDGHKLRNGTLDDEDWPKLSMGVTTLSN 296
Query: 551 TFSLI-RCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQM 609
+ I ++P ++ L K L HG+ +VID + +R + + +S +
Sbjct: 297 SPIYIDDTPGITVPEMRSKLRRLK---LEHGLGFVVIDYLQLIHGRRMAGENRQQEISDI 353
Query: 610 LTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR-- 666
+K+ A+ + +A R + + P L DI S D ++R+
Sbjct: 354 SRSLKQLARELEVPILALAQLSRSVEQRQDKRPMLSDIRESGSIEQDADVVAFLYRDDYY 413
Query: 667 DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
+P+ + V+V + K RN G I FL
Sbjct: 414 NPDTENPNVVEVIIAKQRNGPTGKIELVFL 443
>gi|406039483|ref|ZP_11046838.1| replicative DNA helicase [Acinetobacter ursingii DSM 16037 = CIP
107286]
Length = 481
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 111/265 (41%), Gaps = 22/265 (8%)
Query: 443 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G+ G++TG+ L N+ Y + G+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTYGMQAGDLIIVAARPSMGKTTFAMNLVESVLFNSNLPALV 264
Query: 502 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE--- 558
SME A +L+ ++YG + G W T ++++ +
Sbjct: 265 YSMEMPADSIAMRLI----------SSYGKVHQGHLRSGKLDGDEWSKVTGTILQLQEKH 314
Query: 559 -----NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 613
+ +LP + + A + G G ++ Y +L + +S++ +
Sbjct: 315 LYIDDSSALPPTEVRSRARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSL 374
Query: 614 KRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEA 670
K A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 375 KALAKEMNCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKES 434
Query: 671 GPIDRVQVCVRKVRNKVVGTIGEAF 695
++ + K RN +GT+ AF
Sbjct: 435 KEAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|319941484|ref|ZP_08015812.1| replicative DNA helicase [Sutterella wadsworthensis 3_1_45B]
gi|319805104|gb|EFW01934.1| replicative DNA helicase [Sutterella wadsworthensis 3_1_45B]
Length = 465
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 118/280 (42%), Gaps = 31/280 (11%)
Query: 437 IDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHA 495
I+ Y +++ + G+S+G+ L+ + L G+L I+ G P+ GK+ + + N+
Sbjct: 183 IELYNTKSTSEVTGVSSGYPNLDHVTAGLQRGDLIIIAGRPSMGKTSFALNIAENVGVDQ 242
Query: 496 GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----WLSNT 551
+ SME + A++++ S R+ ++ +G+ W + T
Sbjct: 243 ELPVAVFSMEMGADQLAQRMI--------------SSVGRIDAQKLRKGQLDDEDWDNFT 288
Query: 552 FSLIRCEN-----DSLP--SIKWVLDLAKAAVLRHGVRGLVIDPYNEL--DHQRPVSQTE 602
+L R E D P +I + + V + G GLV+ Y +L +R
Sbjct: 289 AALHRLEEKPIYIDDTPGLTISELTSRTRRLVNQAGPLGLVVIDYIQLMSGQRRSNQDNR 348
Query: 603 TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 661
+ +S++ +K A+ V ++ R + + + P + D+ S D +
Sbjct: 349 AQELSEISRGLKSLAKELGVPVIALSQLNRSVDSRTDKRPVMSDLRESGAIEQDADVIMF 408
Query: 662 IHRNRDPEAGPIDR--VQVCVRKVRNKVVGTIGEAFLSYN 699
I+R+ +D+ ++ V K RN +GT+ FL N
Sbjct: 409 IYRDVVYNKETVDKNLAEIIVAKQRNGPIGTLRMTFLGGN 448
>gi|388455841|ref|ZP_10138136.1| replicative DNA helicase [Fluoribacter dumoffii Tex-KL]
Length = 460
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 123/288 (42%), Gaps = 40/288 (13%)
Query: 434 FDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 491
++IDA YH +GD G++TG L+E+ + L P +L IV G P+ GK+ L+ N+
Sbjct: 179 VEKIDALYH--NGDAITGLATGLSDLDEMTSGLQPSDLIIVAGRPSMGKT----TLVMNM 232
Query: 492 NEHAGWK----FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE----RMT--VEEF 541
EHA K ++ SME A +++ + + G + R+T V
Sbjct: 233 AEHAAIKSGKPVLVFSMEMPADSLAMRMMSSLGRIDQHKIRTGKLDDDDWPRVTSAVHML 292
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV--S 599
+ ++ +T +L E + A+ HG GL++ Y +L + P +
Sbjct: 293 SEAPLFIDDTPALSPGEMRA---------RARRLAKEHGNIGLIVVDYLQL-MKVPGFNA 342
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDN 658
T +S++ +K A+ V ++ R L + P + D+ S D
Sbjct: 343 DNRTAEISEISRSLKSLAKELQAPVIALSQLNRSLEQRADKRPVMSDLRESGAIEQDADL 402
Query: 659 GIVIHR----NRD-PEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 700
I+R N D P+ G ++ + K RN +G + AF+ Y R
Sbjct: 403 ICFIYRDEVYNEDSPDKG---TAEIIIAKQRNGPIGKVRVAFIGKYTR 447
>gi|290959035|ref|YP_003490217.1| replicative DNA helicase [Streptomyces scabiei 87.22]
gi|260648561|emb|CBG71672.1| putative replicative DNA helicase [Streptomyces scabiei 87.22]
Length = 486
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 137/328 (41%), Gaps = 28/328 (8%)
Query: 382 RCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYY 441
R ++ + +DVD + + ++ A+ E + P+ + DEI+A
Sbjct: 166 RITQMGYAADDDVDEIVNRAQAEIF----AVTEQRTTEDYLPLGDIME--GALDEIEAIG 219
Query: 442 HRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWK 498
R SG+ G+ TG+ L++L N L PG++ I+ P GKS +D A C+I +
Sbjct: 220 SR-SGEMTGVPTGFTDLDQLTNGLHPGQMIIIAARPAMGKSTLALDFARACSIKHN--MP 276
Query: 499 FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE 558
V+ S+E E A +LL + G MT E++ + + + +
Sbjct: 277 SVIFSLEMGRNEIAMRLLSAEARVALHHMRSG----TMTDEDWTRLARRMPDVSAAPLYI 332
Query: 559 NDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRF 616
+DS P++ + AK L R+ ++ ++ID + S++ + VS M +K
Sbjct: 333 DDS-PNLSMMEIRAKCRRLKQRNDLKLVIIDYLQLMQSGGKRSESRQQEVSDMSRNLKLL 391
Query: 617 AQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEA 670
A+ V ++ R + P + D+ S D I++HR P A
Sbjct: 392 AKELELPVIALSQLNRGPEQRTDKKPMVSDLRESGSIEQDADMVILLHREDAYEKESPRA 451
Query: 671 GPIDRVQVCVRKVRNKVVGTIGEAFLSY 698
G D + V K RN TI AF +
Sbjct: 452 GEAD---IIVGKHRNGPTATITVAFQGH 476
>gi|456387077|gb|EMF52590.1| dnaB protein [Streptomyces bottropensis ATCC 25435]
Length = 486
Score = 45.8 bits (107), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 137/328 (41%), Gaps = 28/328 (8%)
Query: 382 RCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYY 441
R ++ + +DVD + + ++ A+ E + P+ + DEI+A
Sbjct: 166 RITQMGYAADDDVDEIVNRAQAEIF----AVTEQRTTEDYLPLGDIME--GALDEIEAIG 219
Query: 442 HRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWK 498
R SG+ G+ TG+ L++L N L PG++ I+ P GKS +D A C+I +
Sbjct: 220 SR-SGEMTGVPTGFTDLDQLTNGLHPGQMIIIAARPAMGKSTLALDFARACSIKHN--MP 276
Query: 499 FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE 558
V+ S+E E A +LL + G MT E++ + + + +
Sbjct: 277 SVIFSLEMGRNEIAMRLLSAEARVALHHMRSG----TMTDEDWTRLARRMPDVSAAPLYI 332
Query: 559 NDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRF 616
+DS P++ + AK L R+ ++ ++ID + S++ + VS M +K
Sbjct: 333 DDS-PNLSMMEIRAKCRRLKQRNDLKLVIIDYLQLMQSGGKRSESRQQEVSDMSRNLKLL 391
Query: 617 AQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEA 670
A+ V ++ R + P + D+ S D I++HR P A
Sbjct: 392 AKELELPVIALSQLNRGPEQRTDKKPMVSDLRESGSIEQDADMVILLHREDAYEKESPRA 451
Query: 671 GPIDRVQVCVRKVRNKVVGTIGEAFLSY 698
G D + V K RN TI AF +
Sbjct: 452 GEAD---IIVGKHRNGPTATITVAFQGH 476
>gi|125719130|ref|YP_001036263.1| replicative DNA helicase [Streptococcus sanguinis SK36]
gi|323350800|ref|ZP_08086459.1| DNA replication protein DnaC [Streptococcus sanguinis VMC66]
gi|401681775|ref|ZP_10813671.1| replicative DNA helicase [Streptococcus sp. AS14]
gi|422822754|ref|ZP_16870947.1| DNA replication protein DnaC [Streptococcus sanguinis SK353]
gi|422822841|ref|ZP_16871030.1| DNA replication protein DnaC [Streptococcus sanguinis SK405]
gi|422825196|ref|ZP_16873375.1| DNA replication protein DnaC [Streptococcus sanguinis SK678]
gi|422847852|ref|ZP_16894535.1| DNA replication protein DnaC [Streptococcus sanguinis SK72]
gi|422849763|ref|ZP_16896439.1| DNA replication protein DnaC [Streptococcus sanguinis SK115]
gi|422850447|ref|ZP_16897117.1| DNA replication protein DnaC [Streptococcus sanguinis SK150]
gi|422852661|ref|ZP_16899325.1| DNA replication protein DnaC [Streptococcus sanguinis SK160]
gi|422856271|ref|ZP_16902928.1| DNA replication protein DnaC [Streptococcus sanguinis SK1]
gi|422857276|ref|ZP_16903926.1| DNA replication protein DnaC [Streptococcus sanguinis SK1057]
gi|422861141|ref|ZP_16907783.1| DNA replication protein DnaC [Streptococcus sanguinis SK330]
gi|422863825|ref|ZP_16910455.1| DNA replication protein DnaC [Streptococcus sanguinis SK408]
gi|422872041|ref|ZP_16918534.1| DNA replication protein DnaC [Streptococcus sanguinis SK1087]
gi|422877662|ref|ZP_16924132.1| DNA replication protein DnaC [Streptococcus sanguinis SK1056]
gi|422880521|ref|ZP_16926984.1| DNA replication protein DnaC [Streptococcus sanguinis SK1059]
gi|422882987|ref|ZP_16929436.1| DNA replication protein DnaC [Streptococcus sanguinis SK49]
gi|422929950|ref|ZP_16962890.1| DNA replication protein DnaC [Streptococcus sanguinis ATCC 29667]
gi|422930465|ref|ZP_16963396.1| DNA replication protein DnaC [Streptococcus sanguinis SK340]
gi|125499047|gb|ABN45713.1| Replicative DNA helicase, putative [Streptococcus sanguinis SK36]
gi|322122974|gb|EFX94677.1| DNA replication protein DnaC [Streptococcus sanguinis VMC66]
gi|324989551|gb|EGC21497.1| DNA replication protein DnaC [Streptococcus sanguinis SK353]
gi|324991893|gb|EGC23816.1| DNA replication protein DnaC [Streptococcus sanguinis SK405]
gi|324996217|gb|EGC28127.1| DNA replication protein DnaC [Streptococcus sanguinis SK678]
gi|325686449|gb|EGD28478.1| DNA replication protein DnaC [Streptococcus sanguinis SK72]
gi|325689327|gb|EGD31333.1| DNA replication protein DnaC [Streptococcus sanguinis SK115]
gi|325695733|gb|EGD37632.1| DNA replication protein DnaC [Streptococcus sanguinis SK150]
gi|325698061|gb|EGD39942.1| DNA replication protein DnaC [Streptococcus sanguinis SK160]
gi|327458518|gb|EGF04868.1| DNA replication protein DnaC [Streptococcus sanguinis SK1]
gi|327463807|gb|EGF10123.1| DNA replication protein DnaC [Streptococcus sanguinis SK1057]
gi|327467653|gb|EGF13150.1| DNA replication protein DnaC [Streptococcus sanguinis SK330]
gi|327471580|gb|EGF17023.1| DNA replication protein DnaC [Streptococcus sanguinis SK408]
gi|328945146|gb|EGG39301.1| DNA replication protein DnaC [Streptococcus sanguinis SK1087]
gi|332359524|gb|EGJ37343.1| DNA replication protein DnaC [Streptococcus sanguinis SK1056]
gi|332363577|gb|EGJ41358.1| DNA replication protein DnaC [Streptococcus sanguinis SK1059]
gi|332364136|gb|EGJ41913.1| DNA replication protein DnaC [Streptococcus sanguinis SK49]
gi|339613583|gb|EGQ18319.1| DNA replication protein DnaC [Streptococcus sanguinis ATCC 29667]
gi|339621250|gb|EGQ25813.1| DNA replication protein DnaC [Streptococcus sanguinis SK340]
gi|400185780|gb|EJO20005.1| replicative DNA helicase [Streptococcus sp. AS14]
Length = 451
Score = 45.8 bits (107), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 143/347 (41%), Gaps = 33/347 (9%)
Query: 366 PGQALAEELARRVGRERCWRVRWPKKND-VDHFKDANEVLMYLGPGALKEVVENAELYPI 424
P A AE A+ V + R + + ++ D + + + GA K +++ +E
Sbjct: 97 PTSANAEYYAKIVAEKAILRRLISRLTESINQAYDGDRLSEEIIAGAEKALIDVSETANR 156
Query: 425 MGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSG 479
G N RD F ++A +TS D GI+TG+R L+++ L EL I+ P G
Sbjct: 157 SGFKNIRDVLNLNFGNLEARSLQTS-DITGIATGYRELDKMTTGLHEEELIILAARPAVG 215
Query: 480 KSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE 539
K+ A NI ++ G K + A L+++ + ++ ++T E
Sbjct: 216 KT----AFALNIAQNIGTKLDKTVAIFSLEMGAESLVDRMLASEGVINSHSIRTGQLTDE 271
Query: 540 EFEQ---GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNEL-- 592
E+++ A L+N I D P I+ ++A L G GLV+ Y +L
Sbjct: 272 EWQKYTIATANLANASIYI----DDTPGIRITEIRSRARKLAQETGNLGLVLIDYLQLIT 327
Query: 593 DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAH 651
R Q E +S+ L K A+ V ++ R + + P L DI S
Sbjct: 328 GTGRENRQQEVSEISRQL---KILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGS 384
Query: 652 FINKCDNGIVIHRN-------RDPEAGPIDRVQVCVRKVRNKVVGTI 691
D ++R+ + E P ++V+V + K R+ GT+
Sbjct: 385 IEQDADIVAFLYRDDYYDRAGEEEEGIPNNKVEVIIEKNRSGARGTV 431
>gi|424054927|ref|ZP_17792451.1| replicative DNA helicase [Acinetobacter nosocomialis Ab22222]
gi|407439676|gb|EKF46201.1| replicative DNA helicase [Acinetobacter nosocomialis Ab22222]
Length = 457
Score = 45.8 bits (107), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 111/255 (43%), Gaps = 17/255 (6%)
Query: 448 EFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
E GI TG+ AL N+L + G+L I+ P+ GK+ + + ++ + + S+E
Sbjct: 181 EGGIKTGFTALDNKLGEISKGDLVIIGARPSMGKTTFAQNIAADMMINQSLPVLFISIEM 240
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 566
K R+ A++L+ I G + + + + A L + + ++++ ++
Sbjct: 241 KGRQIAQRLIS-GIGGVELRKVLTGHIDPNSDDTQKVNNAALVLEKAPLMIDDNNRATVA 299
Query: 567 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT----ETEYVSQMLTMVKRFAQHHAC 622
+ AK + ++G G + Y + P+++ + + ++ +KR A C
Sbjct: 300 TIRRSAKKVIAKYGKLGAIFVDY--IQKVTPLTKNNFGRSDKDIGEISNELKRMAGDFDC 357
Query: 623 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDP-EAGPIDRV 676
V +A R L N + P D+ S D + I+R N+D EAG
Sbjct: 358 PVIALAQLNRNLENRPNKRPVNADLKESGDLEQDADIIMFIYRDEVYNKDSKEAGT---A 414
Query: 677 QVCVRKVRNKVVGTI 691
++ + K RN +GT+
Sbjct: 415 EIIIGKARNGSIGTV 429
>gi|357591157|ref|ZP_09129823.1| replicative DNA helicase [Corynebacterium nuruki S6-4]
Length = 503
Score = 45.8 bits (107), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 113/271 (41%), Gaps = 26/271 (9%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
DEID H T G G+ +G+ L+EL N G++ IV P GKS + NI+
Sbjct: 228 MDEIDDL-HSTGGGVAGVLSGFADLDELTNGFRGGQMIIVAARPGVGKSTLALDFMRNIS 286
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 552
G VL S+E E ++ + P A GG + E+ + +
Sbjct: 287 VKQGKATVLFSLEMSKSEVMMRIFSAEAEVP-LSAMRGGKMDDNQWEKLTRRVGQIEGAP 345
Query: 553 SLIRCENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 610
I D P++ AKA L +H + GL++ Y +L ++ + VS+
Sbjct: 346 IFI----DDSPNLTMTEIRAKARRLAQKHDL-GLIVVDYLQLMSSGKKVESRQQEVSEFS 400
Query: 611 TMVKRFAQHHACHVWFVAHPRQLHNWV---GEP--PNLYDISGSAHFINKCDNGIVIHR- 664
+K A+ V VA QL+ V G+ P + D+ S D I+I+R
Sbjct: 401 RQLKLLAKE--VDVPLVAI-SQLNRGVEARGDDALPRVSDLRESGSLEQDADIVILINRP 457
Query: 665 ---NRDPE-AGPIDRVQVCVRKVRNKVVGTI 691
NRD E AG D + + K R +GT+
Sbjct: 458 DSQNRDHERAGEAD---LILAKHRGGPIGTV 485
>gi|17546030|ref|NP_519432.1| replicative DNA helicase [Ralstonia solanacearum GMI1000]
gi|17428325|emb|CAD15013.1| probable replicative dna helicase protein [Ralstonia solanacearum
GMI1000]
Length = 473
Score = 45.8 bits (107), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 118/292 (40%), Gaps = 45/292 (15%)
Query: 435 DEIDAYYHR-TSGDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 492
+ ID YHR D G+ TG+ L+ + + + G +L IV G P+ GK+ A NI
Sbjct: 189 ERIDELYHRDNQSDITGVPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKT----AFSLNIG 244
Query: 493 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
EH G + SME + A ++L GS R+ G+
Sbjct: 245 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 290
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNEL-DHQR 596
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 291 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 350
Query: 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 655
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 351 GGGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 410
Query: 656 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
D + I+R++ +P++ ++ + K RN +GT+ FL GEY
Sbjct: 411 ADVILFIYRDQVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTFL------GEY 456
>gi|422864817|ref|ZP_16911442.1| DNA replication protein DnaC [Streptococcus sanguinis SK1058]
gi|327490393|gb|EGF22179.1| DNA replication protein DnaC [Streptococcus sanguinis SK1058]
Length = 451
Score = 45.8 bits (107), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 143/347 (41%), Gaps = 33/347 (9%)
Query: 366 PGQALAEELARRVGRERCWRVRWPKKND-VDHFKDANEVLMYLGPGALKEVVENAELYPI 424
P A AE A+ V + R + + ++ D + + + GA K +++ +E
Sbjct: 97 PTSANAEYYAKIVAEKAILRRLISRLTESINQAYDGDRLSEEIIAGAEKALIDISETANR 156
Query: 425 MGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSG 479
G N RD F ++A +TS D GI+TG+R L+++ L EL I+ P G
Sbjct: 157 SGFKNIRDVLNLNFGNLEARSLQTS-DITGIATGYRELDKMTTGLHEEELIILAARPAVG 215
Query: 480 KSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE 539
K+ A NI ++ G K + A L+++ + ++ ++T E
Sbjct: 216 KT----AFALNIAQNIGTKLDKTVAIFSLEMGAESLVDRMLASEGVINSHSIRTGQLTDE 271
Query: 540 EFEQ---GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNEL-- 592
E+++ A L+N I D P I+ ++A L G GLV+ Y +L
Sbjct: 272 EWQKYTIATANLANASIYI----DDTPGIRITEIRSRARKLAQETGNLGLVLIDYLQLIT 327
Query: 593 DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAH 651
R Q E +S+ L K A+ V ++ R + + P L DI S
Sbjct: 328 GTGRENRQQEVSEISRQL---KILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGS 384
Query: 652 FINKCDNGIVIHRN-------RDPEAGPIDRVQVCVRKVRNKVVGTI 691
D ++R+ + E P ++V+V + K R+ GT+
Sbjct: 385 IEQDADIVAFLYRDDYYDRAGEEEEGIPNNKVEVIIEKNRSGARGTV 431
>gi|117923574|ref|YP_864191.1| primary replicative DNA helicase [Magnetococcus marinus MC-1]
gi|117607330|gb|ABK42785.1| primary replicative DNA helicase [Magnetococcus marinus MC-1]
Length = 460
Score = 45.8 bits (107), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 106/262 (40%), Gaps = 31/262 (11%)
Query: 450 GISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508
G++TG+ L++ L P +L I+ G P+ GK+ + N H + S+E
Sbjct: 198 GVATGFIDLDQQLAGCQPSDLIILAGRPSMGKTALAMNIAANAALHHREAVGVFSLEMSK 257
Query: 509 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAW------LSNTFSLIR---CEN 559
+ A ++L S RM + GK L+NT +L+
Sbjct: 258 EQLAMRML--------------ASEARMDAQAMRIGKIATSDYQKLTNTATLLSEAPIYI 303
Query: 560 DSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFA 617
D P+I AKA L+ G++ +V+D Y +L + + +SQ+ +K A
Sbjct: 304 DDTPAISITALRAKARRLKRDKGLKLIVVD-YLQLMRGSSNTDNRVQEISQISQGLKAIA 362
Query: 618 QHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID-- 674
+ + V ++ R + + P L D+ S D + + R + ID
Sbjct: 363 KEMSVPVIALSQLSRSVEQRPDKRPILSDLRESGSIEQDADVVMFVFREEYYKREDIDLK 422
Query: 675 -RVQVCVRKVRNKVVGTIGEAF 695
+ +V + K RN VG + AF
Sbjct: 423 GKAEVIIAKQRNGPVGVVKLAF 444
>gi|449277190|gb|EMC85466.1| Twinkle protein, mitochondrial, partial [Columba livia]
Length = 473
Score = 45.8 bits (107), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 116/281 (41%), Gaps = 45/281 (16%)
Query: 220 NELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW--RNGKLVNCKYRDFNKK---- 273
N+ +A F L++ TL+R V R +V FP++ R+ L K KK
Sbjct: 116 NKTKAMFGISLVTDATLKRFGVRYLRTAKSLV--FPWFSPRDATLKGLKLLRAEKKGDAI 173
Query: 274 FWQEK-----DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSV 327
++E+ DT +GL I ++++++ E+D L++ +A + +++P GA + +
Sbjct: 174 AYEEETLPRFDTYHNLFGLPLIGRRDTELVLTGWELDALALHQATGVASLALPRGA-TCL 232
Query: 328 SKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 387
+P YL+Q RI L D A+ AR++ RC VR
Sbjct: 233 PPALLP----------------YLEQFKRITLWLGEDLRSWEAAKLFARKLSIRRCSLVR 276
Query: 388 WPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGD 447
P + N+ L L +++ A + +FR +E+ +
Sbjct: 277 -PGDLQPRPLEALNQDL------NLTKILRAALPASHKSIVSFRQLREEV---FGELVNT 326
Query: 448 EFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWI 484
E W EL +L G ELTI TG SGK+ +I
Sbjct: 327 EQVAGVKWARFPELNKLLKGHRRGELTIFTGPTGSGKTTFI 367
>gi|422322219|ref|ZP_16403261.1| DnaB protein [Achromobacter xylosoxidans C54]
gi|317402868|gb|EFV83410.1| DnaB protein [Achromobacter xylosoxidans C54]
Length = 460
Score = 45.8 bits (107), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 115/282 (40%), Gaps = 38/282 (13%)
Query: 434 FDEIDAYYHR-TSGDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNI 491
+ ID YHR ++ D G+ TG+ L+++ + + G +L IV G P+ GK+ + NI
Sbjct: 178 VERIDELYHRESTSDVTGVPTGFTDLDKMTSGMQGGDLIIVAGRPSMGKTSF----SMNI 233
Query: 492 NEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA- 546
EH G + SME + A ++L GS + GK
Sbjct: 234 GEHVAIEEGLPVAVFSMEMGAVQLAMRML--------------GSVGLLDQHRMRTGKLI 279
Query: 547 ---WLSNTFSLIRCEN-----DSLPSIK--WVLDLAKAAVLRHGVRGLVIDPYNELDHQR 596
W T ++ ++ D P++ V A+ + G GL+I Y +L
Sbjct: 280 AEDWPRVTHAVQLMQDAQVYIDESPALSPMEVRARARRLARQCGQLGLIIIDYLQLMSGN 339
Query: 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 655
+ VS++ +K A+ C + ++ R L + P + D+ S
Sbjct: 340 GSGENRATEVSEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 399
Query: 656 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
D + I+R+ +P++ ++ + K RN +GT+ F
Sbjct: 400 ADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTF 441
>gi|392409627|ref|YP_006446234.1| replicative DNA helicase [Desulfomonile tiedjei DSM 6799]
gi|390622763|gb|AFM23970.1| replicative DNA helicase [Desulfomonile tiedjei DSM 6799]
Length = 461
Score = 45.8 bits (107), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 118/281 (41%), Gaps = 37/281 (13%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELY-NVLPGELTIVTGVPNSGKSEWIDALICNIN 492
F+ I+ Y R + G+ +G++ L+ L P +L I+ G P+ GK+ + N+
Sbjct: 172 FETIERLYERKE-NITGVGSGFKDLDALTAGFQPSDLVIIAGRPSMGKTSFA----LNVG 226
Query: 493 EHAGWKF----VLCSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEF 541
HA + + S+E + A ++L K ++ F ++ G + V
Sbjct: 227 MHAAMELGVPTAVFSLEMSKEQIALRILCARAKVNLKTLRTGFLTSDDWGRLT-LAVGNI 285
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVS 599
+ ++ +T P+I + AKA L+ G+ GLVI Y +L S
Sbjct: 286 SEAPFYVDDT-----------PAINTLEIRAKARRLKKERGL-GLVIVDYLQLMRSAVRS 333
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ + +S + +K A+ + V ++ R++ + + P L D+ S D
Sbjct: 334 DSREKEISDISRSLKALAKEISVPVIALSQLNRKVEDRPNKRPQLADLRESGAIEQDADV 393
Query: 659 GIVIHR----NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+ I+R N+ PE ++ + K RN +GT+ F
Sbjct: 394 IVFIYRDEVYNKSPENPKKGEAEIIIGKQRNGPIGTVTAYF 434
>gi|300791103|ref|YP_003771394.1| replicative DNA helicase [Amycolatopsis mediterranei U32]
gi|384154648|ref|YP_005537464.1| replicative DNA helicase [Amycolatopsis mediterranei S699]
gi|399542982|ref|YP_006555643.1| replicative DNA helicase [Amycolatopsis mediterranei S699]
gi|299800617|gb|ADJ50992.1| replicative DNA helicase [Amycolatopsis mediterranei U32]
gi|340532802|gb|AEK48007.1| replicative DNA helicase [Amycolatopsis mediterranei S699]
gi|398323752|gb|AFO82699.1| replicative DNA helicase [Amycolatopsis mediterranei S699]
Length = 469
Score = 45.8 bits (107), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 126/311 (40%), Gaps = 32/311 (10%)
Query: 412 LKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 459
+ EVV+ A+ +Y + DY DEIDA R G GI TG+ +
Sbjct: 162 IDEVVDRAQAAIYDVTERRTSEDYVALEELLQPTMDEIDAIASR-GGQSQGIPTGFTDFD 220
Query: 460 ELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 518
EL N L PG++ IV P GKS + + G V+ S+E E ++L
Sbjct: 221 ELTNGLHPGQMIIVAARPGVGKSTLGLDFARSASIRHGLTSVIFSLEMSRTEIVMRMLSA 280
Query: 519 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL- 577
K + G +M+ +++ + +S +DS P++ + AKA L
Sbjct: 281 EAKIRLADMRGG----KMSDDDWTRLARRMSEVSEAPLFVDDS-PNMTMMEIRAKARRLK 335
Query: 578 -RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHN 635
R+ ++ +V+D + + V + E VS+ +K A+ V ++ R
Sbjct: 336 QRNDLKLVVLDYLQLMTSGKRVESRQQE-VSEFSRQMKLLAKEIEVPVIAISQLNRGPEQ 394
Query: 636 WVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVCVRKVRNKVVGT 690
+ P L D+ S D I+++R DP AG D + + K R T
Sbjct: 395 RTDKRPMLSDLRESGSLEQDADLVILVNRPDAWERDDPRAGEAD---LIIAKHRAGPTAT 451
Query: 691 IGEAF-LSYNR 700
I A L Y+R
Sbjct: 452 ITVAHQLHYSR 462
>gi|148912819|ref|YP_001293398.1| Putative DnaB-like replicative helicase [Pseudomonas phage F10]
Length = 476
Score = 45.8 bits (107), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 121/294 (41%), Gaps = 38/294 (12%)
Query: 432 DYFDEIDAYYHRTSGDEFGISTGWRALNELY-NVLPGELTIVTGVPNSGKS-------EW 483
+ D ID ++R + G TG +L+ + PG + +V G P SGK+ E
Sbjct: 178 EAIDGIDRRFNREV--KLGYDTGLPSLDAFIPGICPGHMVVVAGEPGSGKTTLGLGFAER 235
Query: 484 IDALICNINEHAGWKFVL----CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE 539
+ AL CN F L + N+V + KHI + A+ V
Sbjct: 236 V-ALACN---EPALVFSLEMTDVELANRVLSSVGSVPLKHIAEGHSMADSDWPGLTGAVN 291
Query: 540 EFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 599
+ N LI C++ SL +++ + + + HG+ GLV Y L +
Sbjct: 292 KL--------NHAPLILCDDASL-TLRDIRQICRTVKREHGL-GLVAVDYIGLIKGEQRN 341
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAH----PRQLHNWVGEPPNLYDISGSAHFINK 655
+ + V+++ +KR A+ V +A P+ N + P D+ S
Sbjct: 342 ASRYDVVTEISKGLKRLAKELGVPVVVLAQLNRGPKARGN---KRPTKSDLRDSGQIEAD 398
Query: 656 CDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDIV 709
D +++HR+++ +AG ++ V K R+ G +G A + + +++I+
Sbjct: 399 ADVVVLVHRDQESDAGKAGITELIVDKNRH---GQVGVAHVQHQGQYHRFVEII 449
>gi|218889547|ref|YP_002438411.1| Putative DnaB-like replicative helicase [Pseudomonas aeruginosa
LESB58]
gi|218769770|emb|CAW25530.1| Putative DnaB-like replicative helicase [Pseudomonas aeruginosa
LESB58]
Length = 464
Score = 45.8 bits (107), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 120/290 (41%), Gaps = 30/290 (10%)
Query: 432 DYFDEIDAYYHRTSGDEFGISTGWRALNELY-NVLPGELTIVTGVPNSGKSE----WIDA 486
+ D ID ++R + G TG +L+ + PG + +V G P SGK+ + +
Sbjct: 166 EAIDGIDRRFNREV--KLGYDTGLPSLDAFIPGICPGHMVVVAGEPGSGKTTLGLGFAER 223
Query: 487 LICNINEHA---GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 543
+ NE A + + N+V + KHI + A+ V +
Sbjct: 224 VALACNEPALVFSLEMTDVELANRVLSSVGSVPLKHIAEGHSMADSDWPGLTGAVNKL-- 281
Query: 544 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 603
N LI C++ SL +++ + + + HG+ G+V Y L + +
Sbjct: 282 ------NDAPLILCDDASL-TLRDIRQICRTVKREHGL-GMVAVDYIGLIKGEQRNASRY 333
Query: 604 EYVSQMLTMVKRFAQHHACHVWFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNG 659
+ V+++ +KR A+ V +A P+ N + P D+ S D
Sbjct: 334 DVVTEISKGLKRLAKELGVPVVVLAQLNRGPKARGN---KRPTKSDLRDSGQIEADADVV 390
Query: 660 IVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDIV 709
+++HR+++ +AG ++ V K R+ G +G A + + +++I+
Sbjct: 391 VLVHRDQESDAGKAGITELIVDKNRH---GQVGVAHVQHQGQFHRFVEII 437
>gi|398814509|ref|ZP_10573190.1| replicative DNA helicase [Brevibacillus sp. BC25]
gi|398036778|gb|EJL29987.1| replicative DNA helicase [Brevibacillus sp. BC25]
Length = 461
Score = 45.8 bits (107), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 111/260 (42%), Gaps = 31/260 (11%)
Query: 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWK-----FVLCSMENKVREHARKLLEKHIK 521
G+L I+ P+ GK+ A + G + + S+E + + ++L K
Sbjct: 197 GQLIILGARPSVGKT----AFALKMARTTGIQPDSDPVAIFSLEMRKGDLLNRMLSAEAK 252
Query: 522 KPFFEANYGGSAERMTVEEFEQGKAWLSNTF--SLIRCENDSLPSIKWVLDLAKAAVLRH 579
P + + +M+ E+ Q +SN F S I E+ ++ ++ ++A +H
Sbjct: 253 IPLLKIRH----NKMSEGEW-QVFTQVSNKFYRSNIYMEDKGRQALNEIVAESRALKRKH 307
Query: 580 GVRGLVIDPY-----NELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQL 633
G G+++ Y N+ +R + + + + +K A+ C V +A R +
Sbjct: 308 GKVGMILIDYLGLIGNKGRGRRNRNVNRDQEIGEYTGTLKELAKELDCPVVLLAQLNRDI 367
Query: 634 HNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE------AGPIDRVQVCVRKVRNKV 687
+ + PNL + S + D +HR+ E PI +V++ + K R+
Sbjct: 368 DKGIVKRPNLSSLRESGNIEQDADVVAFLHRDDSEEYVNFATGEPISKVELIIAKNRDGS 427
Query: 688 VGTIGEAFLSYNRVTGEYMD 707
VGT+ L++ RV E++D
Sbjct: 428 VGTVN---LAFRRVFQEFID 444
>gi|218291256|ref|ZP_03495240.1| replicative DNA helicase [Alicyclobacillus acidocaldarius LAA1]
gi|218238858|gb|EED06069.1| replicative DNA helicase [Alicyclobacillus acidocaldarius LAA1]
Length = 459
Score = 45.4 bits (106), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 117/271 (43%), Gaps = 16/271 (5%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
F+ I+ Y + G+ G+ TG+ L+ + + +L IV P+ GK+ + + N+
Sbjct: 181 FERIEQLYE-SDGNITGVPTGYSDLDRMTSGFQKSDLIIVAARPSVGKTAFALNIAQNVA 239
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN--YGGSAERMTVEEFEQGKAWLSN 550
AG + S+E + +++L + F + + G+ + + G LSN
Sbjct: 240 VRAGLPVAIFSLEMSKDQLVQRML---CAEAFIDGHKLRNGTLDDEDWPKLSMGVTTLSN 296
Query: 551 TFSLI-RCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH-QRPVSQTETEYVSQ 608
+ I ++P ++ L K L HG+ +VID Y +L H +R + + +S
Sbjct: 297 SPIYIDDTPGITVPEMRSKLRRLK---LEHGLGFVVID-YLQLIHGRRMAGENRQQEISD 352
Query: 609 MLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR- 666
+ +K+ A+ + +A R + + P L DI S D ++R+
Sbjct: 353 ISRSLKQLARELEVPILALAQLSRSVEQRQDKRPMLSDIRESGSIEQDADVVAFLYRDDY 412
Query: 667 -DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
+P+ + V+V + K RN G I FL
Sbjct: 413 YNPDTENPNVVEVIIAKQRNGPTGKIELVFL 443
>gi|91204549|emb|CAJ70777.1| strongly similar to replicative DNA helicase [Candidatus Kuenenia
stuttgartiensis]
Length = 447
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 122/286 (42%), Gaps = 35/286 (12%)
Query: 430 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELY-NVLPGELTIVTGVPNSGKSEWIDALI 488
++ F I+ + R S G+STG+ ++L + P EL IV P+ GK+ + +
Sbjct: 167 LKETFSRIENLHDRES-RLTGLSTGFYDFDDLTCGLQPSELVIVAARPSMGKTSF----V 221
Query: 489 CNINEHAGW----KFVLCSMENKVREHARKLLEKH-------IKKPFFEANYGGSAERMT 537
NI EH G + SME ++ A+ +L H ++K F E + +R+
Sbjct: 222 MNIIEHIGVVEKKPAAIFSMEMSAQQLAQNMLCSHSKIDAHKLRKGFLEDD-----DRLW 276
Query: 538 VEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQ 595
G LS I + P + + AKA L+ + ++ + +D Y +L +
Sbjct: 277 -SALSNGLGSLSEAPIFI----EDTPGLTVLEVRAKARRLKAQYDIQLIAVD-YLQL-ME 329
Query: 596 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFIN 654
P + + +S + +K A+ A V V+ R + + G P + D+ S
Sbjct: 330 SPRGENRQQEISIISRGLKSLARELAIPVIAVSQLNRSVESREGHRPRMSDLRESGSIEQ 389
Query: 655 KCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSY 698
D ++HR +PE ++ + K RN GTI FLS+
Sbjct: 390 DADVIALLHREDYFNPEKKD-GTAELIIAKQRNGPTGTIKLTFLSH 434
>gi|163784037|ref|ZP_02178994.1| replicative DNA helicase [Hydrogenivirga sp. 128-5-R1-1]
gi|159880694|gb|EDP74241.1| replicative DNA helicase [Hydrogenivirga sp. 128-5-R1-1]
Length = 486
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 109/262 (41%), Gaps = 28/262 (10%)
Query: 450 GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508
G+ +G+ L+ L PG+L IV P GK+ + +++ N++ S+E
Sbjct: 183 GLPSGFYELDRLTTGFHPGDLIIVAARPAMGKTSFALSILHNVSIVENKPSAFFSLEMSK 242
Query: 509 REHARKLLEKHIKKPFFEANYG----GSAERMTVEEFEQGKA--WLSNTFSLIRCENDSL 562
+ A +LL K P + G E++T + E A ++ +T SL
Sbjct: 243 EQIAMRLLCNETKIPLRKVRSGFLTKEELEKITEKSLEMASAPIYVDDTASL-------- 294
Query: 563 PSIKWVLDL-AKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 619
+LDL AKA L+ ++ +V+D + R V + E V+++ +K A+
Sbjct: 295 ----SILDLRAKARKLKREKDIQLVVVDYLQLMRSSRRVENRQQE-VAEISRGLKGLAKD 349
Query: 620 HACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPID 674
V +A RQ + P L D+ S D + IHR ++P
Sbjct: 350 LNIPVIALAQLSRQAELRSDKRPQLADLRESGSIEQDADMVMFIHRPEYYKKNPTPEEEG 409
Query: 675 RVQVCVRKVRNKVVGTIGEAFL 696
++ + K RN GT+ AF+
Sbjct: 410 IAEIIIAKQRNGPTGTVKLAFI 431
>gi|169631968|ref|YP_001705617.1| replicative DNA helicase [Mycobacterium abscessus ATCC 19977]
gi|419710348|ref|ZP_14237814.1| replicative DNA helicase [Mycobacterium abscessus M93]
gi|420866385|ref|ZP_15329774.1| replicative DNA helicase [Mycobacterium abscessus 4S-0303]
gi|420871176|ref|ZP_15334558.1| replicative DNA helicase [Mycobacterium abscessus 4S-0726-RA]
gi|420875626|ref|ZP_15339002.1| replicative DNA helicase [Mycobacterium abscessus 4S-0726-RB]
gi|420912571|ref|ZP_15375883.1| replicative DNA helicase [Mycobacterium abscessus 6G-0125-R]
gi|420919025|ref|ZP_15382328.1| replicative DNA helicase [Mycobacterium abscessus 6G-0125-S]
gi|420924195|ref|ZP_15387491.1| replicative DNA helicase [Mycobacterium abscessus 6G-0728-S]
gi|420929854|ref|ZP_15393133.1| replicative DNA helicase [Mycobacterium abscessus 6G-1108]
gi|420969548|ref|ZP_15432751.1| replicative DNA helicase [Mycobacterium abscessus 3A-0810-R]
gi|420980192|ref|ZP_15443369.1| replicative DNA helicase [Mycobacterium abscessus 6G-0212]
gi|420985577|ref|ZP_15448744.1| replicative DNA helicase [Mycobacterium abscessus 6G-0728-R]
gi|420988359|ref|ZP_15451515.1| replicative DNA helicase [Mycobacterium abscessus 4S-0206]
gi|421009710|ref|ZP_15472819.1| replicative DNA helicase [Mycobacterium abscessus 3A-0119-R]
gi|421015751|ref|ZP_15478825.1| replicative DNA helicase [Mycobacterium abscessus 3A-0122-R]
gi|421020842|ref|ZP_15483898.1| replicative DNA helicase [Mycobacterium abscessus 3A-0122-S]
gi|421026252|ref|ZP_15489295.1| replicative DNA helicase [Mycobacterium abscessus 3A-0731]
gi|421031232|ref|ZP_15494262.1| replicative DNA helicase [Mycobacterium abscessus 3A-0930-R]
gi|421037199|ref|ZP_15500216.1| replicative DNA helicase [Mycobacterium abscessus 3A-0930-S]
gi|421041930|ref|ZP_15504938.1| replicative DNA helicase [Mycobacterium abscessus 4S-0116-R]
gi|421045976|ref|ZP_15508976.1| replicative DNA helicase [Mycobacterium abscessus 4S-0116-S]
gi|169243935|emb|CAM64963.1| Replicative DNA helicase [Contains: Endonuclease PI-MtuHIP (Mtu
DnaB intein)] [Mycobacterium abscessus]
gi|382941180|gb|EIC65500.1| replicative DNA helicase [Mycobacterium abscessus M93]
gi|392065101|gb|EIT90950.1| replicative DNA helicase [Mycobacterium abscessus 4S-0303]
gi|392067101|gb|EIT92949.1| replicative DNA helicase [Mycobacterium abscessus 4S-0726-RB]
gi|392070646|gb|EIT96493.1| replicative DNA helicase [Mycobacterium abscessus 4S-0726-RA]
gi|392111916|gb|EIU37686.1| replicative DNA helicase [Mycobacterium abscessus 6G-0125-S]
gi|392114565|gb|EIU40334.1| replicative DNA helicase [Mycobacterium abscessus 6G-0125-R]
gi|392126842|gb|EIU52593.1| replicative DNA helicase [Mycobacterium abscessus 6G-1108]
gi|392128848|gb|EIU54598.1| replicative DNA helicase [Mycobacterium abscessus 6G-0728-S]
gi|392164470|gb|EIU90159.1| replicative DNA helicase [Mycobacterium abscessus 6G-0212]
gi|392170573|gb|EIU96251.1| replicative DNA helicase [Mycobacterium abscessus 6G-0728-R]
gi|392182638|gb|EIV08289.1| replicative DNA helicase [Mycobacterium abscessus 4S-0206]
gi|392195316|gb|EIV20935.1| replicative DNA helicase [Mycobacterium abscessus 3A-0119-R]
gi|392196386|gb|EIV22004.1| replicative DNA helicase [Mycobacterium abscessus 3A-0122-R]
gi|392206565|gb|EIV32148.1| replicative DNA helicase [Mycobacterium abscessus 3A-0122-S]
gi|392209775|gb|EIV35347.1| replicative DNA helicase [Mycobacterium abscessus 3A-0731]
gi|392219114|gb|EIV44639.1| replicative DNA helicase [Mycobacterium abscessus 3A-0930-R]
gi|392221051|gb|EIV46575.1| replicative DNA helicase [Mycobacterium abscessus 3A-0930-S]
gi|392222858|gb|EIV48381.1| replicative DNA helicase [Mycobacterium abscessus 4S-0116-R]
gi|392235429|gb|EIV60927.1| replicative DNA helicase [Mycobacterium abscessus 4S-0116-S]
gi|392245204|gb|EIV70682.1| replicative DNA helicase [Mycobacterium abscessus 3A-0810-R]
Length = 458
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 125/303 (41%), Gaps = 35/303 (11%)
Query: 412 LKEVVE--NAELYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 459
+ EVV+ AE+Y + DY DEIDA G G+ TG+ L+
Sbjct: 152 VAEVVDRAQAEVYDVTDRRMSEDYVPLEELLQPTMDEIDAIAS-AGGISKGVPTGFTDLD 210
Query: 460 ELYNVL-PGELTIVTGVPNSGKSEW-IDAL-ICNINEHAGWKFVLCSMENKVREHARKLL 516
E+ N L PG++ IV P GKS +D + C+I V+ S+E E +LL
Sbjct: 211 EITNGLHPGQMIIVAARPGVGKSTLGLDFMRSCSIKHQ--LPSVIFSLEMSKTEIVMRLL 268
Query: 517 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAV 576
K + G RM+ +++ + +S +DS P++ + AKA
Sbjct: 269 SAEAKIKLGDMRSG----RMSDDDWTRLARRMSEISEAPLYIDDS-PNLTMMEIRAKARR 323
Query: 577 L--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQL 633
L + G++ +V+D Y +L ++ + VS+ +K A+ V ++ R
Sbjct: 324 LNQKAGLKLVVVD-YLQLMTSGKKHESRQQEVSEFSRNLKLLAKELEVPVIAISQLNRGP 382
Query: 634 HNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVCVRKVRNKVV 688
+ P + D+ S D I++HR DP G D + + K RN
Sbjct: 383 EQRTDKRPQVSDLRESGSLEQDADMVILLHRPDAFERDDPRGGEAD---LILGKHRNGPT 439
Query: 689 GTI 691
TI
Sbjct: 440 ATI 442
>gi|418423105|ref|ZP_12996274.1| replicative DNA helicase/endonuclease PI-MtuHIP [Mycobacterium
abscessus subsp. bolletii BD]
gi|363993080|gb|EHM14306.1| replicative DNA helicase/endonuclease PI-MtuHIP [Mycobacterium
abscessus subsp. bolletii BD]
Length = 431
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 125/303 (41%), Gaps = 35/303 (11%)
Query: 412 LKEVVE--NAELYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 459
+ EVV+ AE+Y + DY DEIDA G G+ TG+ L+
Sbjct: 125 VAEVVDRAQAEVYDVTDRRMSEDYVPLEELLQPTMDEIDAIAS-AGGISKGVPTGFTDLD 183
Query: 460 ELYNVL-PGELTIVTGVPNSGKSEW-IDAL-ICNINEHAGWKFVLCSMENKVREHARKLL 516
E+ N L PG++ IV P GKS +D + C+I V+ S+E E +LL
Sbjct: 184 EITNGLHPGQMIIVAARPGVGKSTLGLDFMRSCSIKHQ--LPSVIFSLEMSKTEIVMRLL 241
Query: 517 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAV 576
K + G RM+ +++ + +S +DS P++ + AKA
Sbjct: 242 SAEAKIKLGDMRSG----RMSDDDWTRLARRMSEISEAPLYIDDS-PNLTMMEIRAKARR 296
Query: 577 L--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQL 633
L + G++ +V+D Y +L ++ + VS+ +K A+ V ++ R
Sbjct: 297 LNQKAGLKLVVVD-YLQLMTSGKKHESRQQEVSEFSRNLKLLAKELEVPVIAISQLNRGP 355
Query: 634 HNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVCVRKVRNKVV 688
+ P + D+ S D I++HR DP G D + + K RN
Sbjct: 356 EQRTDKRPQVSDLRESGSLEQDADMVILLHRPDAFERDDPRGGEAD---LILGKHRNGPT 412
Query: 689 GTI 691
TI
Sbjct: 413 ATI 415
>gi|328948107|ref|YP_004365444.1| replicative DNA helicase [Treponema succinifaciens DSM 2489]
gi|328448431|gb|AEB14147.1| replicative DNA helicase [Treponema succinifaciens DSM 2489]
Length = 442
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 115/263 (43%), Gaps = 29/263 (11%)
Query: 450 GISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505
GI +G LN+L ++ G E+ I+ P+ GK+ +++ NI G S+E
Sbjct: 183 GIPSG---LNDLDSMTSGFQNSEMIIIGARPSMGKTALALSMMQNIAIDRGIPCGFFSLE 239
Query: 506 NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSI 565
+ A++LL + + P + G + +E+F++ + F+ D+ P++
Sbjct: 240 MSADQIAQRLLSQIARIPGTKLRNG----MLKIEDFKKLQDAAGECFNAPLYIVDT-PNM 294
Query: 566 KWVLDL---AKAAVLRHGVRGLVIDPYNELDHQRPVSQT--ETEYVSQMLTMVKRFAQHH 620
K +LDL A+ + V+ + ID + + P +Q + +S+ L + R +
Sbjct: 295 K-LLDLRAMARRMKVNQKVQIIFIDYIGLITSENPDAQLFEQQSAISKSLKSLARELEIP 353
Query: 621 ACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH----RNRDPEAG--PID 674
+ VA + GE PNL + GS D + IH N++ G P+
Sbjct: 354 IVVLCQVARAAE-----GEEPNLAQLRGSGSIEQDADMVMFIHGKRSDNKETNEGYNPVQ 408
Query: 675 RVQVCVRKVRNKVVGTIGEAFLS 697
++ V K RN +G + FLS
Sbjct: 409 ERKLIVAKQRNGPIGDVDVIFLS 431
>gi|167564998|ref|ZP_02357914.1| DNA primase [Burkholderia oklahomensis EO147]
Length = 497
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 122/293 (41%), Gaps = 38/293 (12%)
Query: 226 FAERLISAETLRRNR--VMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQ-EKDTEK 282
+R I+ ET R+ V + R G V IA G V K R+ +K+F K
Sbjct: 19 LGKRGIAEETCRKYGYLVGEDRDGVPVQIATYCDSAGSPVAQKLRNADKEFVVVGKLKHA 78
Query: 283 VFYG--LDDIEGESDIIIVEGEMDKLSMEEAGFLN--CVSVPDGAPSSVSKKNVPSEEQD 338
+G L G+ +I+ EGE+D LS+ +A L VSVP+GA + +
Sbjct: 79 GLFGQHLWRTTGKK-VIVTEGEIDCLSVAQALSLKWPVVSVPNGAQGAA---------KS 128
Query: 339 TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFK 398
Q W L+ I+L D D PG+ A + R + P + K
Sbjct: 129 LAAQIEW-----LRGYEEIVLWFDNDDPGREAVAACAAILPPGRVKFITTPHE-----LK 178
Query: 399 DANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL 458
DAN++L GP A+ + A+ Y G+ D E + G T + L
Sbjct: 179 DANDLLREHGPKAVVDATWEAKAYRPDGVIAGEDLTPE-----RLKAKAAPGWQTPYPLL 233
Query: 459 NELY-NVLPGELTIVTGVPNSGKS----EWIDALICNINEHAGWKFVLCSMEN 506
NE+ + P +L ++T GKS E++ A +C + G F+ S+E+
Sbjct: 234 NEMTRGIRPRQLWLITAGTGVGKSTDAREFMYAALCE-GKKVGALFLEESVED 285
>gi|425746224|ref|ZP_18864254.1| replicative DNA helicase [Acinetobacter baumannii WC-323]
gi|425486101|gb|EKU52473.1| replicative DNA helicase [Acinetobacter baumannii WC-323]
Length = 481
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/264 (19%), Positives = 113/264 (42%), Gaps = 20/264 (7%)
Query: 443 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G+ G++TG+ L N+ + PG+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTSGMQPGDLIIVAARPSMGKTTFAMNLVESVLQYNRLPALV 264
Query: 502 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
SME A +L+ + H++ +A+ T+ + ++ ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQEMHLYIDDS--- 320
Query: 555 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTELRARARRVAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 615 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 671
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMQCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 672 PIDRVQVCVRKVRNKVVGTIGEAF 695
++ + K RN +G++ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGSVRLAF 459
>gi|402756334|ref|ZP_10858590.1| replicative DNA helicase [Acinetobacter sp. NCTC 7422]
Length = 481
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/264 (19%), Positives = 113/264 (42%), Gaps = 20/264 (7%)
Query: 443 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G+ G++TG+ L N+ + PG+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTSGMQPGDLIIVAARPSMGKTTFAMNLVESVLQYNRLPALV 264
Query: 502 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
SME A +L+ + H++ +A+ T+ + ++ ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQEMHLYIDDS--- 320
Query: 555 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTELRARARRVAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 615 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 671
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMQCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 672 PIDRVQVCVRKVRNKVVGTIGEAF 695
++ + K RN +G++ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGSVCLAF 459
>gi|189423107|ref|YP_001950284.1| DnaB domain-containing protein [Geobacter lovleyi SZ]
gi|189419366|gb|ACD93764.1| DnaB domain protein [Geobacter lovleyi SZ]
Length = 318
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 125/299 (41%), Gaps = 36/299 (12%)
Query: 423 PIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNE-LYNVLPGELTIVTGVPNSGKS 481
PI + F D ++ H +G G TG+ L+ L + PG LT++ P++GKS
Sbjct: 24 PIYAVHEFIDESLKMVQQSHEHAGAITGYPTGFLDLDHMLCGLQPGTLTVIASRPSNGKS 83
Query: 482 EWIDALICNINEHAGWKFV----LCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMT 537
+L NI + G K + S+E + +LL A G +E
Sbjct: 84 ----SLAMNIAMNVGLKHTIPTAIFSLELSKEQLGIRLLSAVAHVDICRARTGHLSES-D 138
Query: 538 VEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP 597
+ + + K L S I ++ S SI +L A + H V+ ++ID Y +L
Sbjct: 139 LCKLDDAKETLRK--SAIYVDDTSGISITELLAKAIRLKVDHNVQVIIID-YLQLMRDDA 195
Query: 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGE------PPNLYDISGSAH 651
S + +S++ + +K A+ V ++ QLH+ VG P L D+ +
Sbjct: 196 RSALDPTEISRISSSLKVLARELGVAVILLS---QLHSSVGRRKAKKTRPKLSDLGNTGS 252
Query: 652 FINKCDNGIVIHRN-------RDPEAGPI----DRVQVCVRKVRNKVVGTIGEAFLSYN 699
+ D ++I+R R + + D ++ V K +N G IG F++++
Sbjct: 253 LEDDADVILLIYRESVYCKACRRRDGSCVHNHEDLAEIIVAKHKN---GPIGTVFVNFH 308
>gi|294790340|ref|ZP_06755498.1| replicative DNA helicase [Scardovia inopinata F0304]
gi|294458237|gb|EFG26590.1| replicative DNA helicase [Scardovia inopinata F0304]
Length = 474
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 105/261 (40%), Gaps = 22/261 (8%)
Query: 450 GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508
G+ TG++ +++L L PG++ +V G P GKS + H G V+ S+E
Sbjct: 211 GVKTGFKDIDDLTQGLQPGQMIVVAGRPAMGKSTLGVDFARSAALHQGLTTVIFSLEMNS 270
Query: 509 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN---DSLPSI 565
E A+++L P SA R E + L+N F + D P++
Sbjct: 271 NELAQRILSAETNIPL-------SALRKPDEITPERWGTLNNAFDKLHDAPLFIDDSPNM 323
Query: 566 KWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623
+ AK L+ ++ +VID + + V + E VS+ +K A+ A
Sbjct: 324 SLMEIRAKCRRLKQTENLKLVVIDYLQLMSSGKKVESRQQE-VSEFSRALKLLAKELAVP 382
Query: 624 VWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRVQV 678
V ++ R + P L D+ S D ++HR N++ G D +
Sbjct: 383 VVALSQLNRGSEMRQDKIPQLADLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD---I 439
Query: 679 CVRKVRNKVVGTIGEAFLSYN 699
+ K RN T AFL N
Sbjct: 440 IMAKHRNGPTDTFHLAFLGAN 460
>gi|429201615|ref|ZP_19193067.1| replicative DNA helicase [Streptomyces ipomoeae 91-03]
gi|428662807|gb|EKX62211.1| replicative DNA helicase [Streptomyces ipomoeae 91-03]
Length = 489
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 135/327 (41%), Gaps = 33/327 (10%)
Query: 382 RCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYY 441
R ++ + +DVD + + ++ A+ E + P+ + DEI+A
Sbjct: 170 RITQMGYAADDDVDEIVNRAQAEIF----AVTEQRTTEDYLPLGDIME--GALDEIEAIG 223
Query: 442 HRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKF- 499
R SG+ G+ TG+ L++L N L PG++ I+ P GKS L + A K
Sbjct: 224 SR-SGEMTGVPTGFTDLDQLTNGLHPGQMIIIAARPAMGKS----TLALDFARAASIKHN 278
Query: 500 ---VLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIR 556
V+ S+E E A +LL + G MT E++ + + + +
Sbjct: 279 LPSVIFSLEMGRNEIAMRLLSAEARVALHHMRSG----TMTDEDWTRLARRMPDVSAAPL 334
Query: 557 CENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
+DS P++ + AK L R+ ++ ++ID Y +L S++ + VS M +K
Sbjct: 335 YIDDS-PNLSMMEIRAKCRRLKQRNDLKLVIID-YLQLMQSGKRSESRQQEVSDMSRNLK 392
Query: 615 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDP 668
A+ V ++ R + P + D+ S D I++HR P
Sbjct: 393 LLAKELELPVIALSQLNRGPEQRTDKKPMVSDLRESGSIEQDADMVILLHREDAYEKESP 452
Query: 669 EAGPIDRVQVCVRKVRNKVVGTIGEAF 695
AG D + V K RN TI AF
Sbjct: 453 RAGEAD---IIVGKHRNGPTATITVAF 476
>gi|302879237|ref|YP_003847801.1| replicative DNA helicase [Gallionella capsiferriformans ES-2]
gi|302582026|gb|ADL56037.1| replicative DNA helicase [Gallionella capsiferriformans ES-2]
Length = 465
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 125/308 (40%), Gaps = 34/308 (11%)
Query: 411 ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDE-FGISTGWRALNELYNVL-PGE 468
A+ ++++ P M L++ FD I R++G G+ TG L+ + L PG+
Sbjct: 147 AMAQLIDTGTDEPTM-LYD--GMFDAIQDIDDRSTGRRPSGLLTGVAELDAITGGLEPGQ 203
Query: 469 LTIVTGVPNSGKSEWIDALICNINEHA---GWKFVLCSMENKVREHARKLLEKHIKKPFF 525
L IV P+ GK+ A+ N+ + G S+E RE ++L+ P
Sbjct: 204 LIIVAARPSVGKT----AIALNVVDSVVTQGKSVAFFSLEMTRREIIQRLIALRTGVPVS 259
Query: 526 EANYGGSAERMTVEEFE-----QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG 580
G R+ E+++ QGKA N L + S+ + +V A+ +HG
Sbjct: 260 AMRAG----RLEPEQWDLISASQGKA---NGQRLHLIDRSSI-GVAYVRAAARKIKRQHG 311
Query: 581 VRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGE 639
+ +V+D L R T+ + + +K A+ + +A R +
Sbjct: 312 LDLVVVD---YLGLMRGEGHNRTQEIGSLSRGLKGLAKELGVPIIALAQLNRATETRQDK 368
Query: 640 PPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR--VQVCVRKVRNKVVGTIGEAFLS 697
P L D+ S D ++HR P R V VRK RN G +GE L+
Sbjct: 369 RPMLSDLRDSGEIEQDADIVAMLHREEQHNPAPEWRGLADVMVRKNRN---GPLGEMLLT 425
Query: 698 YNRVTGEY 705
+ T ++
Sbjct: 426 LDGPTMKF 433
>gi|411007988|ref|ZP_11384317.1| replicative DNA helicase [Streptomyces globisporus C-1027]
Length = 453
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 113/279 (40%), Gaps = 34/279 (12%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSEWIDALICNIN 492
FDEI+A G+ G+ TG+ L+ L + PG+L ++ G P GKS L +I
Sbjct: 181 FDEIEAAGKLKPGELTGVPTGFTDLDRLTLGLQPGQLILIAGRPAMGKS----TLGLDIA 236
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTV------EEFEQGKA 546
A K L + + E +RK E H++ E + G R V E + KA
Sbjct: 237 RAASLKHKLFTAFFSL-EMSRK--ELHMRLLSAEGSVGLHHIRSGVLTDDSWERMARAKA 293
Query: 547 WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLVIDPYNEL----DHQRPVSQT 601
+ L+ D P + + KA L+ G LV+ Y +L +RP S+
Sbjct: 294 RIDAGNLLL----DDSPELTALSIRTKARRLKQRGCLDLVVIDYLQLLQYGGGRRPESRQ 349
Query: 602 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 661
+ VS + +K A+ V ++H R + P + D+ S D I+
Sbjct: 350 QE--VSDISRQLKLMAKELEVPVIALSH-RGPEQRTDKKPQVSDLRESGSLEQDADVVIL 406
Query: 662 IHR-----NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+HR P AG D + V K RN I AF
Sbjct: 407 LHREDQYEKESPRAGEADFI---VGKHRNGPTAIITAAF 442
>gi|134096189|ref|YP_001101264.1| replicative DNA helicase (partial) [Herminiimonas arsenicoxydans]
gi|133740092|emb|CAL63143.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
Length = 302
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 97/245 (39%), Gaps = 29/245 (11%)
Query: 432 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNI 491
D+ E A ++ +G W N PGE+++ G+ GKS ++ + ++
Sbjct: 27 DFLAETIAAFYPPAGASLPPRPLWDKTNGKIAFRPGEVSLWAGINGHGKSMFMSQIEIDL 86
Query: 492 NEHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 550
G K + S E VR+ R A + ++ ++ + AW +
Sbjct: 87 MTQ-GEKVLSLSFEMLPVRQMQRM------------ARQAYANDQPPIDFLNRFHAWTTG 133
Query: 551 TFSLIRCENDSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 608
+ D SIKW V+ + + A + G+ VID + + ET+Y +Q
Sbjct: 134 KLWMY----DHNGSIKWEKVMAVMRYAQEKFGITQFVIDSLMK------CVKGETDYDAQ 183
Query: 609 --MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666
+ + FAQ H+ V H R+ + P +D G+ + DN ++ RN+
Sbjct: 184 KDFVNELCAFAQARKVHIHLVHHIRKGED-EDRIPGKFDAKGAGAITDMVDNVFIVWRNK 242
Query: 667 DPEAG 671
E G
Sbjct: 243 KAERG 247
>gi|442322510|ref|YP_007362531.1| replicative DNA helicase [Myxococcus stipitatus DSM 14675]
gi|441490152|gb|AGC46847.1| replicative DNA helicase [Myxococcus stipitatus DSM 14675]
Length = 454
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 137/347 (39%), Gaps = 29/347 (8%)
Query: 368 QALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGL 427
QAL LA VGRE + + +++ D E ++L L E +L P+ L
Sbjct: 115 QALRRRLAN-VGRE-IQDLASQETGELEVLLDEAERKVFL----LAEKKREGDLRPVSEL 168
Query: 428 FNFRDYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDA 486
D +D +G G+STG+ L N+L + GEL I+ P GK+ +
Sbjct: 169 MEH--TLDLLDKMKSAATGIT-GLSTGYIDLDNQLTGLHAGELIILAARPGVGKTSFAMN 225
Query: 487 LICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA 546
+ N + S+E + +LL + + GG E+F++
Sbjct: 226 MAVNAALKENKAVGIFSLEMPADQLLMRLLASTARVDMKKLR-GGRLSPHDEEKFQEMAG 284
Query: 547 WLSNTFSLIRCENDSLPSIKWVLDL-AKAAVLRHG--VRGLVIDPYNELDHQRPVSQTET 603
L N I P DL AKA ++ L+I Y +L HQ+ ++
Sbjct: 285 ALYNAPIYIDDSGGLSP-----FDLRAKARRVKQKDPRLSLIIIDYLQLMHQKGKVESRQ 339
Query: 604 EYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVI 662
V+++ +K+ A+ + ++ R++ G P L D+ S D + I
Sbjct: 340 LEVAEISRALKQLAKELEVPIIALSQLSRKVEERKGGKPMLSDLRESGSIEQDADVVMFI 399
Query: 663 HRNRDPEAGPIDR--------VQVCVRKVRNKVVGTIGEAFLS-YNR 700
HR E G + V++ + K RN +G I FL+ Y R
Sbjct: 400 HREEVEEGGEAPQNAQTTVIPVELIIAKQRNGPIGEIPLVFLAEYTR 446
>gi|372217767|ref|YP_005087448.1| primase/helicase, partial [Cyanophage 9515-10a]
gi|310005688|gb|ADP00076.1| primase/helicase [Cyanophage 9515-10a]
Length = 491
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 128/308 (41%), Gaps = 47/308 (15%)
Query: 228 ERLISAETLRRNRVMQKRHGHEVVIAFPYW-RNGKLVNCKYRDFNKKF-WQEKDTEKVFY 285
+R ++ E R+ R+ H V+ F Y +NG+ + K + K F W K+T+ +
Sbjct: 28 KRGLTEEVCRKFRI----HKDGDVLRFHYTNKNGQTIAAKIKTKGKDFYWDGKNTDNQLF 83
Query: 286 GLDDI-EGESDIIIVEGEMDKLSMEEAGFLNC-----VSVPDGAPSSVSKKNVPSEEQDT 339
G + + S + + EGE+D S G+ +SVP+GA + KK+
Sbjct: 84 GQNLFPDTGSRLTLYEGELDAAS----GYAAMPTWPHMSVPNGAAGA--KKD-------- 129
Query: 340 KYQYLWNCKMYLKQASRIILATDGDPPG--QALAEELARRVGRERCWRVRWPKKNDVDHF 397
L + ++L D D PG A R G+ + R ++ +
Sbjct: 130 ----LQKVIELTQGYDEVVLFFDNDSPGIAAAEECAALLRPGQAKIAR--------MEKY 177
Query: 398 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 457
KDA++ L A+++ + +A+ Y G+ + + D + T ++
Sbjct: 178 KDASDALQQGDMEAIRKAIWDAKTYRPDGIVDAKSLLDIV-----TTPEPPCAHEYPFKG 232
Query: 458 LN-ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLL 516
LN +L+ + G LT +T SGK+ + + ++ + G + + +E R A L+
Sbjct: 233 LNKKLHGIRYGTLTAITAGTGSGKTSFCRHIAAHLLQE-GERVGVVELEASNRNTALGLM 291
Query: 517 EKHIKKPF 524
+ KP
Sbjct: 292 SAAVGKPL 299
>gi|54027550|ref|YP_121792.1| replicative DNA helicase [Nocardia farcinica IFM 10152]
gi|54019058|dbj|BAD60428.1| putative replicative DNA helicase [Nocardia farcinica IFM 10152]
Length = 885
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 84/191 (43%), Gaps = 21/191 (10%)
Query: 412 LKEVVE--NAELYPIMGLFNFRDYF----------DEIDAYYHRTSGDEFGISTGWRALN 459
+ EVV+ AE+Y + D+ DEID+ R G G+ TG+ L+
Sbjct: 153 IAEVVDRAQAEVYEVTERRTTEDFLPLEELLQPTMDEIDSIASR-GGISLGVPTGFSELD 211
Query: 460 ELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 518
EL N L PG++ IV P GKS + + + G V+ S+E E +LL
Sbjct: 212 ELTNGLHPGQMIIVAARPGVGKSTLGMDFMRSCSIKHGLASVIFSLEMSRTEIVMRLLSA 271
Query: 519 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL- 577
K + G RM+ +++ + +S +DS P++ + AKA L
Sbjct: 272 EAKIKLADMRSG----RMSDDDWTKLARRMSEISEAPLFVDDS-PNLTMMEIRAKARRLK 326
Query: 578 -RHGVRGLVID 587
RH ++ +V+D
Sbjct: 327 QRHDLKLVVVD 337
>gi|300780224|ref|ZP_07090080.1| replicative DNA helicase DnaB [Corynebacterium genitalium ATCC
33030]
gi|300534334|gb|EFK55393.1| replicative DNA helicase DnaB [Corynebacterium genitalium ATCC
33030]
Length = 490
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 118/280 (42%), Gaps = 28/280 (10%)
Query: 435 DEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINE 493
DE+ A Y + G G+ TG+ L+ L N L G++ I+ P GKS + + +
Sbjct: 218 DEL-AAYEKDGGLAAGVPTGFLDLDRLTNGLHAGQMIIIAARPGVGKSTLALDFVRSCSI 276
Query: 494 HAGWKFVLCSMENKVREHARKLL--EKHIKKPFFEANYGGSA--ERMT--VEEFEQGKAW 547
H V+ S+E E +LL E IK + + E++T + E +Q +
Sbjct: 277 HNDLTSVIFSLEMSASEIVMRLLSAETEIKLSAMRSGQMEESDWEKLTKRLREIQQAPIF 336
Query: 548 LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVS 607
+ ++ +L E + A+ +HG+ +V+D + R V + E VS
Sbjct: 337 VDDSPNLTMME---------IRSKARRLKQQHGLDLVVLDYMQLMSSGRKVESRQQE-VS 386
Query: 608 QMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-- 664
+ +K A+ V ++ R + + P L D+ S D ++++R
Sbjct: 387 EFSRQLKLLAKELEVPVIAISQLNRGPESRTDKRPQLADLRESGSLEQDADIVMLLYRPD 446
Query: 665 --NRDPE-AGPIDRVQVCVRKVRNKVVGTIGEAF-LSYNR 700
+RD E AG D + + K R + TI A L Y+R
Sbjct: 447 SQDRDNERAGEAD---IIIAKHRGGPIDTIAVAHQLHYSR 483
>gi|289548579|ref|YP_003473567.1| replicative DNA helicase [Thermocrinis albus DSM 14484]
gi|289182196|gb|ADC89440.1| replicative DNA helicase [Thermocrinis albus DSM 14484]
Length = 464
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 117/301 (38%), Gaps = 29/301 (9%)
Query: 413 KEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDE---FGISTGWRALNELYNVL-PGE 468
+ V E +E + F+ +D E+ +R ++ G+ TG+ L+ + P +
Sbjct: 141 QRVYEISEKHTTTQYFHIKDVVREVLEIINRRKREDRIITGLPTGFMELDLMTTGFHPSD 200
Query: 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN 528
L IV P GKS ++ ++ +I V+ S+E + +LL P
Sbjct: 201 LVIVAARPGMGKSSFMLSIALHIAVEERVPVVIYSLEMTKEQLVLRLLSMTSGVPLQNLR 260
Query: 529 YGGSAERMTVEEFEQGKAWLSNTFSLIRCE--NDSLPSIKWV-LDLAKAAVLRHGVRGLV 585
G E E+ + ++ L + + D P++ V L + + + G V
Sbjct: 261 KGFVGE-------EEDRKLMAAALELAKADIIIDDTPNLSTVDLRIRSRKLKKERNVGAV 313
Query: 586 IDPYNEL---DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPP 641
Y +L H+R Q E +S+ L K A+ V +A RQ+ + + P
Sbjct: 314 FVDYLQLLRPPHRRSSRQEEVAEISRNL---KALAKELELPVIALAQLSRQVEHRSDKRP 370
Query: 642 NLYDISGSAHFINKCDNGIVIHR------NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
L D+ S D + IHR N PE I ++ V K R G + AF
Sbjct: 371 QLADLRESGQIEQDADLILFIHRPEYYKKNPSPEEQGI--AEIIVAKQRQGPTGIVKVAF 428
Query: 696 L 696
+
Sbjct: 429 I 429
>gi|312135658|ref|YP_004002996.1| DnaB domain-containing protein helicase domain-containing protein
[Caldicellulosiruptor owensensis OL]
gi|311775709|gb|ADQ05196.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor
owensensis OL]
Length = 607
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 122/279 (43%), Gaps = 36/279 (12%)
Query: 223 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFN---KKFWQEKD 279
++YFA R IS + + + V + VV FP ++GK++ R+ N +K+ +
Sbjct: 129 KSYFASRGISEKFMEKYNVGFDVENNAVV--FPIVQDGKVICWTRRNLNNPDRKYDFPQG 186
Query: 280 TEKVFYGLDDI--EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 337
+ + LD + + ++++ I EG D L++EEA + P A +S + +
Sbjct: 187 YNAIPFNLDVLKDDKQTNVFITEGVFDALTIEEA-----IGQPAIALNSCTNQQ------ 235
Query: 338 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 397
+L Q + + D D G+ A++L ++ ++ + V N+ +
Sbjct: 236 ----NFLQELNRIKPQGKKFFILFDNDHDGKEQAKKLFDKM--KKVYDVALCNWNNNLPY 289
Query: 398 KDANEVLMYLGPGALKEVV--ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG-ISTG 454
KD NE + K ++ YP L + ++E ++F I TG
Sbjct: 290 KDVNEFWIADPANCTKFLLWQLKTAFYP-YALISIAPSYEEF------IKSEKFATIPTG 342
Query: 455 WRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNI 491
++ L+++ N ++ G L + P+ GK+ ++ LI N
Sbjct: 343 FKMLDDVLNGGLIAGNLYVFGAKPSVGKTTFLLQLIDNF 381
>gi|355710875|gb|AES03829.1| progressive external ophthalmoplegia 1 [Mustela putorius furo]
Length = 316
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 98/237 (41%), Gaps = 24/237 (10%)
Query: 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 526
GELT+ TG SGK+ +I ++ G + S E AR +L +
Sbjct: 41 GELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEISNVRLARVMLTQF------- 92
Query: 527 ANYGGSAERMTVEEFEQGKAWLS--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGL 584
+ R+ E+ ++ W L SI+ V+D + AV + + +
Sbjct: 93 -----AVGRLE-EQLDRYDEWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHV 146
Query: 585 VIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLY 644
VID + +S ++ ++FA ++CHV V HPR+ + +
Sbjct: 147 VIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATDNSCHVTLVIHPRKEDD--DKELQTA 204
Query: 645 DISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
I GSA + DN ++I ++R GP R +QV +N+ G +G L +N+
Sbjct: 205 SIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 256
>gi|407478649|ref|YP_006792526.1| replicative DNA helicase [Exiguobacterium antarcticum B7]
gi|407062728|gb|AFS71918.1| Replicative DNA helicase [Exiguobacterium antarcticum B7]
Length = 450
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 135/326 (41%), Gaps = 29/326 (8%)
Query: 386 VRWPKKNDVDHFKDANEVLMYLGPGALKEVVE------NAELYPIMGLFNFRDYFDEIDA 439
+R + D ++ NEV + L A ++++E +A PI + + ID
Sbjct: 118 IRTANEIVTDGYERQNEVDVLLNE-AERKILEVSQGKGSASFIPISDVLT--SAYATIDK 174
Query: 440 YYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWK 498
H+ SG+ GI TG+R L+++ +L IV P+ GK+ + + N+ A
Sbjct: 175 L-HKQSGETTGIPTGFRDLDKVTAGFQRNDLIIVAARPSVGKTAFALNISQNVATRADEN 233
Query: 499 FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ---GKAWLS-NTFSL 554
+ S+E + ++L E N A+R+ + E GK L+ ++ S
Sbjct: 234 VAIFSLEMGAEQLVMRML-------CAEGNV--DAQRLRTGQLEDEDWGKLSLAMSSLSQ 284
Query: 555 IRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM 612
D P I+ AK L+ HG+ ++ID + S + VS++
Sbjct: 285 AGIYIDDTPGIRVNDIRAKCRRLKQEHGLGMIMIDYLQLIQGNGRSSDNRQQEVSEISRS 344
Query: 613 VKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPE 669
+K A+ V ++ R + + + P + DI S D ++R+ + E
Sbjct: 345 LKSLARELEVPVIALSQLSRGVESRQDKRPMMSDIRESGAIEQDADIVAFLYRDDYYNKE 404
Query: 670 AGPIDRVQVCVRKVRNKVVGTIGEAF 695
+ +++ + K RN GT+ AF
Sbjct: 405 TEDANTIEIIIAKQRNGPTGTVKLAF 430
>gi|356668238|gb|AET35346.1| DNA primase/helicase protein [uncultured virus]
Length = 233
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P FKD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GTLSPGKLYIANLP-------FKDPNECLLAGQPDAIAKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|172059035|ref|YP_001815495.1| replicative DNA helicase [Exiguobacterium sibiricum 255-15]
gi|171991556|gb|ACB62478.1| replicative DNA helicase [Exiguobacterium sibiricum 255-15]
Length = 450
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 135/326 (41%), Gaps = 29/326 (8%)
Query: 386 VRWPKKNDVDHFKDANEVLMYLGPGALKEVVE------NAELYPIMGLFNFRDYFDEIDA 439
+R + D ++ NEV + L A ++++E +A PI + + ID
Sbjct: 118 IRTANEIVTDGYERQNEVDVLLNE-AERKILEVSQGKGSASFIPISDVLT--SAYATIDK 174
Query: 440 YYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWK 498
H+ SG+ GI TG+R L+++ +L IV P+ GK+ + + N+ A
Sbjct: 175 L-HKQSGETTGIPTGFRDLDKVTAGFQRNDLIIVAARPSVGKTAFALNISQNVATRADEN 233
Query: 499 FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ---GKAWLS-NTFSL 554
+ S+E + ++L E N A+R+ + E GK L+ ++ S
Sbjct: 234 VAIFSLEMGAEQLVMRML-------CAEGNV--DAQRLRTGQLEDEDWGKLSLAMSSLSQ 284
Query: 555 IRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM 612
D P I+ AK L+ HG+ ++ID + S + VS++
Sbjct: 285 AGIYIDDTPGIRVNDIRAKCRRLKQEHGLGMIMIDYLQLIQGNGRSSDNRQQEVSEISRS 344
Query: 613 VKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPE 669
+K A+ V ++ R + + + P + DI S D ++R+ + E
Sbjct: 345 LKSLARELEVPVIALSQLSRGVESRQDKRPMMSDIRESGAIEQDADIVAFLYRDDYYNKE 404
Query: 670 AGPIDRVQVCVRKVRNKVVGTIGEAF 695
+ +++ + K RN GT+ AF
Sbjct: 405 TEDANTIEIIIAKQRNGPTGTVKLAF 430
>gi|334127196|ref|ZP_08501125.1| DNA primase [Centipeda periodontii DSM 2778]
gi|333389972|gb|EGK61127.1| DNA primase [Centipeda periodontii DSM 2778]
Length = 593
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 113/302 (37%), Gaps = 77/302 (25%)
Query: 189 NNRSQSSLKKFSKMKTIREITED----SLELEPLGNELRAYFAERLISAETLRRNRV--- 241
+ R ++ L++ ++ + + D L + G +AY A R I+ ET+ R +
Sbjct: 103 DPREEARLRELDDLRKVNALARDFFHNCLTMTRYGAAGKAYLAGRGITEETIARYGIGFA 162
Query: 242 ----------MQKRHGHEVVIA--------------FPYWRN----------GKLVNCKY 267
QKR E ++ + +RN G++V
Sbjct: 163 PDAWSKLADAFQKRGISEDILVTAGLAVRRERGGGVYDRFRNRVIIPIADERGRIVGFGG 222
Query: 268 R---DFNKKFWQEKDT-----EKVFYGLD----DIEGESDIIIVEGEMDKLSMEEAGFLN 315
R D K+ +T ++ +GLD I E I+VEG MD ++ EAG N
Sbjct: 223 RALGDAQPKYLNTAETPVFNKRRLLFGLDRAHRSIASEGCAIVVEGYMDAIAAWEAGVTN 282
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQ-ALAEEL 374
V+ + +S + + L++A RI+ D D GQ A L
Sbjct: 283 VVATLGTSFTS------------------DHAGILLRRAPRIVFCYDSDTAGQEATLRAL 324
Query: 375 ARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF 434
A GR RV KD +E + G AL+ +VE A P+ L + R +
Sbjct: 325 AAVRGRAAEVRVLLLPDG-----KDPDEYVRTHGAEALRALVETAVPAPVFRLRHVRTHM 379
Query: 435 DE 436
+
Sbjct: 380 TD 381
>gi|121534200|ref|ZP_01666025.1| DNA primase [Thermosinus carboxydivorans Nor1]
gi|121307303|gb|EAX48220.1| DNA primase [Thermosinus carboxydivorans Nor1]
Length = 606
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 79/192 (41%), Gaps = 39/192 (20%)
Query: 238 RNRVM-QKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDT-----EKVFYGLD--- 288
RNRVM R V+ F G++++ D + K+ DT + YGLD
Sbjct: 203 RNRVMFPIRDARGRVVGF----GGRVLD----DSSPKYLNSPDTLLFNKRHLLYGLDAAI 254
Query: 289 -DIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNC 347
I+ +I+VEG MD ++ GF N V +S+ P + L C
Sbjct: 255 RSIKESGQVIVVEGYMDVITAHRFGFTNVV-------ASLGTAFTPEQA-----GLLERC 302
Query: 348 KMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYL 407
+ S+++ A D D GQ+ A A RER + V K + KD +E L
Sbjct: 303 SV-----SQVLFAYDSDAAGQS-ATFRALATVRERGFNV---KVVSIPEGKDPDEFLRRH 353
Query: 408 GPGALKEVVENA 419
GP A VV A
Sbjct: 354 GPEAFARVVAQA 365
>gi|167006318|ref|YP_001661541.1| probable replicative DNA helicase [Streptomyces sp. HK1]
gi|166162400|gb|ABY83521.1| probable replicative DNA helicase [Streptomyces sp. HK1]
Length = 460
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 108/255 (42%), Gaps = 25/255 (9%)
Query: 450 GISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508
G++TG+ ++ L + +LPG++ IV G P+ GKS L +I H K + ++ +
Sbjct: 202 GLATGFTDVDALTSGLLPGQMVIVAGRPSLGKS----TLALDIARHVSVKNAVPALFFSL 257
Query: 509 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAW--LSNTFSLIRCEN---DSLP 563
++L++K F A G S + +T + G W L+ I+ D
Sbjct: 258 EMGRQELMDK-----VFAAEAGISLQHITSGQMTDGD-WDRLARRMPAIQKAPLFIDDTE 311
Query: 564 SIKWVLDLAKAAVL--RHGVRGLVIDPYNELDH--QRPVSQTETEYVSQMLTMVKRFAQH 619
S+ + AKA + RHG+ +V+D + H +RP S+ E V+++ +K A+
Sbjct: 312 SLTIMEARAKARRIKQRHGLGLVVVDYVQLMRHGGRRPDSRQEE--VTEISRNIKLMAKE 369
Query: 620 HACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRV 676
V + R P L D+ S D ++IHR +PE+
Sbjct: 370 LQVPVIALCQLNRGPEQRTDRKPQLSDLRESGALEQDADIVVLIHREDAYEPESARAGET 429
Query: 677 QVCVRKVRNKVVGTI 691
+ K R TI
Sbjct: 430 DLIFAKHRGGAKATI 444
>gi|359798554|ref|ZP_09301125.1| replicative DNA helicase [Achromobacter arsenitoxydans SY8]
gi|359363376|gb|EHK65102.1| replicative DNA helicase [Achromobacter arsenitoxydans SY8]
Length = 460
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 115/282 (40%), Gaps = 38/282 (13%)
Query: 434 FDEIDAYYHR-TSGDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNI 491
+ ID YHR ++ D G+ TG+ L+++ + + G +L IV G P+ GK+ + NI
Sbjct: 178 VERIDELYHRESTSDVTGVPTGFTDLDKMTSGMQGGDLIIVAGRPSMGKTSF----SMNI 233
Query: 492 NEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA- 546
EH G + SME + A ++L GS + GK
Sbjct: 234 GEHVAIEEGLPVAVFSMEMGAVQLAMRML--------------GSVGLLDQHRMRTGKLI 279
Query: 547 ---WLSNTFSLIRCEN-----DSLPSIK--WVLDLAKAAVLRHGVRGLVIDPYNELDHQR 596
W T ++ ++ D P++ V A+ + G GL+I Y +L
Sbjct: 280 AEDWPRVTHAVQLMQDAQVYIDESPALSPMEVRARARRLARQCGQLGLIIIDYLQLMSGN 339
Query: 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 655
+ VS++ +K A+ C + ++ R L + P + D+ S
Sbjct: 340 GSGENRATEVSEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 399
Query: 656 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
D + I+R+ +P++ ++ + K RN +G++ F
Sbjct: 400 ADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSVRLTF 441
>gi|359143528|ref|ZP_09177866.1| replicative DNA helicase [Streptomyces sp. S4]
Length = 460
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 108/255 (42%), Gaps = 25/255 (9%)
Query: 450 GISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508
G++TG+ ++ L + +LPG++ IV G P+ GKS L +I H K + ++ +
Sbjct: 202 GLATGFTDVDSLTSGLLPGQMVIVAGRPSLGKS----TLALDIARHVSVKNTVPALFFSL 257
Query: 509 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAW--LSNTFSLIRCEN---DSLP 563
++L++K F A G S + +T + G W L+ I+ D
Sbjct: 258 EMGRQELMDK-----VFAAEAGISLQHITSGQMTDGD-WDRLARRMPAIQKAPLFIDDTE 311
Query: 564 SIKWVLDLAKAAVL--RHGVRGLVIDPYNELDH--QRPVSQTETEYVSQMLTMVKRFAQH 619
S+ + AKA + RHG+ +V+D + H +RP S+ E V+++ +K A+
Sbjct: 312 SLTIMEARAKARRIKQRHGLGLVVVDYVQLMRHGGRRPDSRQEE--VTEISRNIKLMAKE 369
Query: 620 HACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRV 676
V + R P L D+ S D ++IHR +PE+
Sbjct: 370 LQVPVIALCQLNRGPEQRTDRKPQLSDLRESGALEQDADIVVLIHREDAYEPESARAGET 429
Query: 677 QVCVRKVRNKVVGTI 691
+ K R TI
Sbjct: 430 DLIFAKHRGGAKATI 444
>gi|420913919|ref|ZP_15377229.1| replicative DNA helicase [Mycobacterium abscessus 6G-0125-S]
gi|392126018|gb|EIU51770.1| replicative DNA helicase [Mycobacterium abscessus 6G-0125-S]
Length = 456
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 105/254 (41%), Gaps = 21/254 (8%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-IDAL-ICN 490
DEIDA + G G+ TG+ L+++ N L PG+ IV G P GKS +D L C+
Sbjct: 183 LDEIDAIA--SGGSSRGVPTGFADLDDVTNGLHPGQFVIVAGRPGLGKSTLALDFLRSCS 240
Query: 491 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 550
I V+ S+E E +LL + + G +M+ ++ Q L
Sbjct: 241 IKHK--MASVIFSLEMSKSEIVMRLLSAEARIKLQDIRSG----KMSDNDWAQMARRLGE 294
Query: 551 TFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQ 608
+DS P++ + AKA LR +R +V+D Y +L ++ + VS
Sbjct: 295 ISESPLYIDDS-PNLTMMEIRAKARRLRQKADLRMIVVD-YLQLMSSGKAYESRQQEVSD 352
Query: 609 MLTMVKRFAQHHACHVWFVAHPRQLHNWVGE-PPNLYDISGSAHFINKCDNGIVIHR--- 664
+K A+ V ++ + G+ P L D+ S D I++HR
Sbjct: 353 FSRSLKLLAKELEVPVVALSQLNRGPEQRGDKKPQLSDLRESGSQEQDADMVILLHRPDA 412
Query: 665 --NRDPEAGPIDRV 676
DP G D +
Sbjct: 413 FDRDDPRGGEADLI 426
>gi|423016486|ref|ZP_17007207.1| replicative DNA helicase [Achromobacter xylosoxidans AXX-A]
gi|338780428|gb|EGP44836.1| replicative DNA helicase [Achromobacter xylosoxidans AXX-A]
Length = 460
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 115/282 (40%), Gaps = 38/282 (13%)
Query: 434 FDEIDAYYHR-TSGDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNI 491
+ ID YHR ++ D G+ TG+ L+++ + + G +L IV G P+ GK+ + NI
Sbjct: 178 VERIDELYHRESTSDVTGVPTGFTDLDKMTSGMQGGDLIIVAGRPSMGKTSF----SMNI 233
Query: 492 NEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA- 546
EH G + SME + A ++L GS + GK
Sbjct: 234 GEHVAIEEGLPVAVFSMEMGAVQLAMRML--------------GSVGLLDQHRMRTGKLI 279
Query: 547 ---WLSNTFSLIRCEN-----DSLPSIK--WVLDLAKAAVLRHGVRGLVIDPYNELDHQR 596
W T ++ ++ D P++ V A+ + G GL+I Y +L
Sbjct: 280 AEDWPRVTHAVQLMQDAQVYIDESPALSPMEVRARARRLARQCGQLGLIIIDYLQLMSGN 339
Query: 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 655
+ VS++ +K A+ C + ++ R L + P + D+ S
Sbjct: 340 GSGENRATEVSEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 399
Query: 656 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
D + I+R+ +P++ ++ + K RN +G++ F
Sbjct: 400 ADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSVRLTF 441
>gi|423349510|ref|ZP_17327166.1| replicative DNA helicase [Scardovia wiggsiae F0424]
gi|393702626|gb|EJD64829.1| replicative DNA helicase [Scardovia wiggsiae F0424]
Length = 477
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 105/262 (40%), Gaps = 22/262 (8%)
Query: 449 FGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507
G+ TG+R +++L L PG++ +V G P GKS + G ++ S+E
Sbjct: 213 LGVKTGFRDIDDLTQGLQPGQMIVVAGRPAMGKSTLGVDFARSAALRQGLTTIIFSLEMN 272
Query: 508 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN---DSLPS 564
E A+++L P SA R E + L++TF + D P+
Sbjct: 273 SIELAQRILSAETNIPL-------SALRKPDEITPERWGALNSTFDKLHDAPLFIDDSPN 325
Query: 565 IKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHAC 622
+ + AK L+ ++ +VID + + V + E VS+ +K A+
Sbjct: 326 MSLMEIRAKCRRLKQTEDLKLVVIDYLQLMSSGKKVESRQQE-VSEFSRALKLLAKELGV 384
Query: 623 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRVQ 677
V ++ R + P L D+ S D ++HR N++ G D
Sbjct: 385 PVVALSQLNRGSEMRQDKIPQLADLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD--- 441
Query: 678 VCVRKVRNKVVGTIGEAFLSYN 699
+ + K RN GT AFL N
Sbjct: 442 IIMAKHRNGPTGTFQLAFLGAN 463
>gi|384109815|ref|ZP_10010677.1| replicative DNA helicase [Treponema sp. JC4]
gi|383868647|gb|EID84284.1| replicative DNA helicase [Treponema sp. JC4]
Length = 441
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 112/276 (40%), Gaps = 15/276 (5%)
Query: 437 IDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALI--CNINE 493
I+A Y R+ GI TG+ L+ + EL I+ P+ GK+ +++ ++ +
Sbjct: 173 IEARY-RSKNQFTGIPTGFAKLDTYTSGFQNSELIIIGARPSIGKTALALSMMQYISVEK 231
Query: 494 HAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-WLSNTF 552
H F S+E ++L + + + G +R V + + W
Sbjct: 232 HIPCGF--FSLEMPYEAIGMRILAQEARVNMSKIR-SGMLKREDVTKIQNAAGRWFEAPL 288
Query: 553 SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM 612
++ N L ++ +A+ V +H V+ + ID Y L S+ + V+++
Sbjct: 289 YVVDTPNMRLIDLRA---MARRMVTKHQVKIIFID-YIGLITTEDSSKATYDQVAEISKS 344
Query: 613 VKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGP 672
+K A+ + VA + + GE P L I GS D + +HR+R E
Sbjct: 345 LKALARE--LQIPIVALSQVARDAEGEEPKLNQIRGSGAVEQDADVVMFLHRDRLKEETA 402
Query: 673 IDRVQVCVRKVRNKVVGTIGEAFL-SYNRVTGEYMD 707
++ + K RN G I F+ SY++ D
Sbjct: 403 AQDAKIILAKQRNGATGDIKIMFIPSYSKFENAQQD 438
>gi|420919151|ref|ZP_15382452.1| replicative DNA helicase [Mycobacterium abscessus 6G-0728-S]
gi|392138374|gb|EIU64110.1| replicative DNA helicase [Mycobacterium abscessus 6G-0728-S]
Length = 431
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 105/254 (41%), Gaps = 21/254 (8%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-IDAL-ICN 490
DEIDA + G G+ TG+ L+++ N L PG+ IV G P GKS +D L C+
Sbjct: 158 LDEIDAIA--SGGSSRGVPTGFADLDDVTNGLHPGQFVIVAGRPGLGKSTLALDFLRSCS 215
Query: 491 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 550
I V+ S+E E +LL + + G +M+ ++ Q L
Sbjct: 216 IKHK--MASVIFSLEMSKSEIVMRLLSAEARIKLQDIRSG----KMSDNDWAQMARRLGE 269
Query: 551 TFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQ 608
+DS P++ + AKA LR +R +V+D Y +L ++ + VS
Sbjct: 270 ISESPLYIDDS-PNLTMMEIRAKARRLRQKADLRMIVVD-YLQLMSSGKAYESRQQEVSD 327
Query: 609 MLTMVKRFAQHHACHVWFVAHPRQLHNWVGE-PPNLYDISGSAHFINKCDNGIVIHR--- 664
+K A+ V ++ + G+ P L D+ S D I++HR
Sbjct: 328 FSRSLKLLAKELEVPVVALSQLNRGPEQRGDKKPQLSDLRESGSQEQDADMVILLHRPDA 387
Query: 665 --NRDPEAGPIDRV 676
DP G D +
Sbjct: 388 FDRDDPRGGEADLI 401
>gi|258515115|ref|YP_003191337.1| TOPRIM domain-containing protein [Desulfotomaculum acetoxidans DSM
771]
gi|257778820|gb|ACV62714.1| TOPRIM domain protein [Desulfotomaculum acetoxidans DSM 771]
Length = 316
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 97/213 (45%), Gaps = 41/213 (19%)
Query: 207 EITEDSLELEPLGNELRAYFA--------ERLISAETLRRNRVMQKRHGHEVVIAFPYW- 257
++T+ + + L N++ +A +R I + + RV + H V FP++
Sbjct: 108 DLTQTQVSTDLLNNDILKRYAYRHPYLEKQRGIEEKWQQGFRVGYCKKSHAV--TFPWFD 165
Query: 258 RNGKLVNCKYRD-FNKKFWQEKDTEKV---FYGLDDI--EGESDIIIVEGEMDKLSMEEA 311
G LVN K+R +K+FW + V YGL+ + ++ + IVE E+D +++ +A
Sbjct: 166 YRGDLVNIKFRSVIDKRFWYYSGGQPVKNHIYGLNFVIKTRKNRVYIVESEIDAITLWQA 225
Query: 312 GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALA 371
G A ++ N+ ++++ Q +I+ATD D GQ +A
Sbjct: 226 GL---------AAVALGGANLTRQQRNLLLQ---------SPVEELIIATDNDLAGQRIA 267
Query: 372 EELARRV-GRERCWRVRWPKKNDVDHFKDANEV 403
+ + R++ G ++ P++ KD NE+
Sbjct: 268 DSIVRQLSGYLDIKKINLPEQ-----VKDVNEL 295
>gi|420924813|ref|ZP_15388106.1| replicative DNA helicase [Mycobacterium abscessus 6G-1108]
gi|420980326|ref|ZP_15443500.1| replicative DNA helicase [Mycobacterium abscessus 6G-0728-R]
gi|392149140|gb|EIU74857.1| replicative DNA helicase [Mycobacterium abscessus 6G-1108]
gi|392177325|gb|EIV02980.1| replicative DNA helicase [Mycobacterium abscessus 6G-0728-R]
Length = 464
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 105/254 (41%), Gaps = 21/254 (8%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-IDAL-ICN 490
DEIDA + G G+ TG+ L+++ N L PG+ IV G P GKS +D L C+
Sbjct: 191 LDEIDAIA--SGGSSRGVPTGFADLDDVTNGLHPGQFVIVAGRPGLGKSTLALDFLRSCS 248
Query: 491 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 550
I V+ S+E E +LL + + G +M+ ++ Q L
Sbjct: 249 IKHK--MASVIFSLEMSKSEIVMRLLSAEARIKLQDIRSG----KMSDNDWAQMARRLGE 302
Query: 551 TFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQ 608
+DS P++ + AKA LR +R +V+D Y +L ++ + VS
Sbjct: 303 ISESPLYIDDS-PNLTMMEIRAKARRLRQKADLRMIVVD-YLQLMSSGKAYESRQQEVSD 360
Query: 609 MLTMVKRFAQHHACHVWFVAHPRQLHNWVGE-PPNLYDISGSAHFINKCDNGIVIHR--- 664
+K A+ V ++ + G+ P L D+ S D I++HR
Sbjct: 361 FSRSLKLLAKELEVPVVALSQLNRGPEQRGDKKPQLSDLRESGSQEQDADMVILLHRPDA 420
Query: 665 --NRDPEAGPIDRV 676
DP G D +
Sbjct: 421 FDRDDPRGGEADLI 434
>gi|220934103|ref|YP_002513002.1| replicative DNA helicase [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995413|gb|ACL72015.1| replicative DNA helicase [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 465
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 115/284 (40%), Gaps = 25/284 (8%)
Query: 430 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALI 488
R+ + I+ Y R G+ TG+ +E+ + L G +L IV G P+ GK+ +
Sbjct: 179 LRNTVEHIEMLYERDDPIT-GLPTGYSEFDEMTSGLQGGDLVIVAGRPSMGKTSFA---- 233
Query: 489 CNINEHAGWK----FVLCSMENKVREHARKLLEK--HIKKPFFEANYGGSAERMTVEEFE 542
NI E+A K + SME + + +LL I + G E F
Sbjct: 234 MNIAEYAALKQQAPVAVFSMEMPGEQLSMRLLSSMGRINQQRLRT---GRLEDDDWPRFT 290
Query: 543 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQ 600
+ LS I D P++ A+A L H GL++ Y +L ++
Sbjct: 291 SAVSMLSEAQLYI----DDSPALSPTEVRARARRLMREHKKLGLIVIDYLQLMQVPGSNE 346
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNG 659
T +S++ +K A+ + V ++ R L + P + D+ S D
Sbjct: 347 NRTTEISEISRGLKALAKELSVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADLI 406
Query: 660 IVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 700
I+R+ +PE+ ++ + K RN +GT+ FL Y R
Sbjct: 407 CFIYRDEVYNPESPDKGTAEIIIAKQRNGPIGTVRLTFLGQYTR 450
>gi|220915218|ref|YP_002490522.1| replicative DNA helicase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219953072|gb|ACL63456.1| replicative DNA helicase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 473
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 109/270 (40%), Gaps = 39/270 (14%)
Query: 450 GISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGW----KFVLCSM 504
G+ TG + L+ + PG LT++ P+ GK+ A NI HA K S+
Sbjct: 203 GVPTGIQTLDRNTLGLQPGTLTVLAARPSVGKT----AFALNIATHAATKAQRKVAFFSL 258
Query: 505 ENKVREHARKLLEKHIKKPFFEANYGGSA----ERMTVEEFEQGKA--WLSNTFSLIRCE 558
E + A ++L K + + + G + +++ + G A WL + F L E
Sbjct: 259 EMPADQLALRMLASEGKLDWRKLSQGQLSRHDWDKLATQADRIGAASLWLDDNFVLTPVE 318
Query: 559 NDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRP--VSQTETEYVSQMLTMVK 614
S K L+ +G LV+ Y +L H +Q+ + ++ + +K
Sbjct: 319 LRS-----------KCRKLKRENGGLDLVMIDYLQLMHAPSDRSNQSREQEIATISRSLK 367
Query: 615 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPE 669
A+ C + ++ R + GEPP L D+ S D + +HR N+D +
Sbjct: 368 SLAKELECPIVALSQLNRSVEKRKGEPPMLSDLRESGAIEQDADIVMFLHRAEEDNKDVQ 427
Query: 670 ----AGPIDRVQVCVRKVRNKVVGTIGEAF 695
AG VQ+ V K R TI F
Sbjct: 428 QGTAAGDTLPVQLIVAKQRQGPTCTIDLVF 457
>gi|380741729|tpe|CCE70363.1| TPA: recombinase related [Pyrococcus abyssi GE5]
Length = 242
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 102/256 (39%), Gaps = 48/256 (18%)
Query: 437 IDAYYHRTSGDEFGISTGWRALNELY--NVLPGELTIVTGVPNSGKSEWIDALICNINEH 494
+ YY R ISTG + L+EL ++PG + ++TG P SGK+ + +
Sbjct: 3 MQKYYER-------ISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLE-GAR 54
Query: 495 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
G K S+ +K E + +L F + Y + V ++ K L + +
Sbjct: 55 KGEKVAYVSLIHKPEEVVKDMLR------FDPSIY------VYVNKW---KLMLYDLGPV 99
Query: 555 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH--QRPVSQ------------ 600
+ E+ +P+ + VL + V G+ LVIDP +D Q PV +
Sbjct: 100 LWRESTRVPTWRSVLSRIREIVEDEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLE 159
Query: 601 ---TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAH-----F 652
+++M+ M K +H + H + +Y + G+ H
Sbjct: 160 DLGVTAYLIAEMIEMDKYSEEHFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKL 219
Query: 653 INKCDNGIVIHRNRDP 668
+ D G+V++ N+ P
Sbjct: 220 LKFTDKGLVVY-NKSP 234
>gi|415722787|ref|ZP_11469180.1| replicative DNA helicase [Gardnerella vaginalis 00703C2mash]
gi|388064259|gb|EIK86816.1| replicative DNA helicase [Gardnerella vaginalis 00703C2mash]
Length = 487
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 111/260 (42%), Gaps = 20/260 (7%)
Query: 448 EFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
E G+ TG+R ++++ L PG++ +V G P GKS + H ++ S+E
Sbjct: 204 EKGVPTGFRDIDDMTQGLQPGQMVVVAGRPAMGKSTLGIDFARSAALHHNMTTIVFSLEM 263
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 566
E A++++ P A + G+AE +T + + + A+ S +DS P++
Sbjct: 264 NKLELAQRIIAAETDIP-MTAMHRGTAEDITTDRWTKLNAFWSKMKDAPLFIDDS-PNMS 321
Query: 567 WVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624
+ AK L+ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 322 LMEIRAKCRRLKQTNDLKLVVIDYLQLMTSGKKVESRQQE-VSEFSRALKLLAKELEVPV 380
Query: 625 WFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRV 676
++ P ++ + P L D+ S D ++HR N++ G D
Sbjct: 381 VALSQLNRGPEMRND---KKPQLSDLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD-- 435
Query: 677 QVCVRKVRNKVVGTIGEAFL 696
+ + K RN T AFL
Sbjct: 436 -IIMAKHRNGPTETFNLAFL 454
>gi|299534267|ref|ZP_07047616.1| hypothetical protein CTS44_25671 [Comamonas testosteroni S44]
gi|298717725|gb|EFI58733.1| hypothetical protein CTS44_25671 [Comamonas testosteroni S44]
Length = 323
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 111/278 (39%), Gaps = 44/278 (15%)
Query: 455 WRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARK 514
W+ + L PGE+T+ G GKS + ++ G K + S E K +
Sbjct: 52 WKKTHGLLQFRPGEVTVWAGANGQGKSM-VTGMVALSLAAQGEKICIASFEMK----PER 106
Query: 515 LLEKHIKKPFFEANYGGSAERMT-------VEEFEQGKAWLSNTFSLIRCENDSLPSIKW 567
LE+ + + F N A R + ++ +EQ + W L D ++ W
Sbjct: 107 TLER-MGRQFAGMNPEAVAARGSEKSIKNLLDVYEQFRDWTDQRLWLY----DQQGTVAW 161
Query: 568 --VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACH 623
V +A+ A GV + ID + Q E +Y Q + + A+ + H
Sbjct: 162 TNVCAVARYAAKVLGVTQIFIDSLMK------CVQGEDDYNGQKAFVDELTAIARDYGVH 215
Query: 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR-------------DPEA 670
+ V H ++ N PN YD+ G+ + DN +++ RN+ + E
Sbjct: 216 IHLVHHIKKPAN-EEHAPNKYDLKGTGAVSDLVDNVVLVWRNKVKERKREENKLTEEDEV 274
Query: 671 GPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708
D V +C ++ + G IG L +++ + +++ I
Sbjct: 275 REPDTVLICDKQRNGEWEGKIG---LWFDKPSQQFLGI 309
>gi|14521160|ref|NP_126635.1| recombinase related [Pyrococcus abyssi GE5]
gi|5458378|emb|CAB49866.1| recA family AAA ATPase [Pyrococcus abyssi GE5]
Length = 240
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 102/256 (39%), Gaps = 48/256 (18%)
Query: 437 IDAYYHRTSGDEFGISTGWRALNELY--NVLPGELTIVTGVPNSGKSEWIDALICNINEH 494
+ YY R ISTG + L+EL ++PG + ++TG P SGK+ + +
Sbjct: 1 MQKYYER-------ISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLE-GAR 52
Query: 495 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
G K S+ +K E + +L F + Y + V ++ K L + +
Sbjct: 53 KGEKVAYVSLIHKPEEVVKDMLR------FDPSIY------VYVNKW---KLMLYDLGPV 97
Query: 555 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH--QRPVSQ------------ 600
+ E+ +P+ + VL + V G+ LVIDP +D Q PV +
Sbjct: 98 LWRESTRVPTWRSVLSRIREIVEDEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLE 157
Query: 601 ---TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAH-----F 652
+++M+ M K +H + H + +Y + G+ H
Sbjct: 158 DLGVTAYLIAEMIEMDKYSEEHFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKL 217
Query: 653 INKCDNGIVIHRNRDP 668
+ D G+V++ N+ P
Sbjct: 218 LKFTDKGLVVY-NKSP 232
>gi|357039072|ref|ZP_09100867.1| replicative DNA helicase [Desulfotomaculum gibsoniae DSM 7213]
gi|355358536|gb|EHG06302.1| replicative DNA helicase [Desulfotomaculum gibsoniae DSM 7213]
Length = 445
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 117/277 (42%), Gaps = 25/277 (9%)
Query: 432 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICN 490
D F ++ Y + G+ G+ TG+ L+ L L PG+L IV G P+ GK+ + + N
Sbjct: 166 DTFKHLEHLY-KHKGEINGVPTGFTDLDRLCQGLQPGDLVIVAGRPSMGKTSFGMCIAYN 224
Query: 491 INEHAGWKFVLCSMENKVREHARKLL-------EKHIKKPFF-EANYGGSAERMTVEEFE 542
E + SME + +++L + I+ F + ++G ++T + E
Sbjct: 225 AAEKNNKPVAVFSMEMSKEQLVQRMLCAEAMVDQHKIRTGFIRDEDWG----KLTQKARE 280
Query: 543 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTE 602
+ I ++ + +++ + A+ + G+ GL++ Y +L ++
Sbjct: 281 IARLP-------IFIDDSGVLTVRQLRAKARRLHMEKGL-GLIVIDYLQLMQGSGRTENR 332
Query: 603 TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 661
+ ++ + +K A+ V +A R + + P + D+ S D +
Sbjct: 333 QQEIANISRSLKALAKELGVPVLALAQLSRSVEQRQDKKPIMSDLRESGSLEQDADVVMF 392
Query: 662 IHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
I+R+ +P+ I + V K RN G + AFL
Sbjct: 393 IYRDEYYNPDTEKIGIADIIVAKQRNGPTGVVELAFL 429
>gi|22028196|gb|AAH34909.1| Peo1 protein [Mus musculus]
Length = 287
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 564 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623
SI+ V+D + AV + V +VID + +S ++ ++FA ++CH
Sbjct: 96 SIRSVIDTMQHAVYVYDVCHVVIDNLQFMMGHEQLSSDRIAAQDYIVGAFRKFATDNSCH 155
Query: 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 683
V V HPR+ + + I GSA + DN ++I ++R GP R ++
Sbjct: 156 VTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRY---LQVS 209
Query: 684 RNKVVGTIGEAFLSYNR 700
+N+ G +G L +N+
Sbjct: 210 KNRFDGDVGVFPLEFNK 226
>gi|333992944|ref|YP_004525558.1| replicative DNA helicase DnaB [Mycobacterium sp. JDM601]
gi|333488912|gb|AEF38304.1| replicative DNA helicase DnaB [Mycobacterium sp. JDM601]
Length = 458
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 20/275 (7%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-IDAL-ICN 490
DEIDA G G+ TG+ L+E+ N L PG++ ++ P GKS +D L C+
Sbjct: 186 MDEIDAIASH-GGIARGVPTGFIDLDEVTNGLHPGQMVVIAARPGMGKSTLALDFLRSCS 244
Query: 491 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 550
I V+ S+E E +LL K + G RMT +++ + +S
Sbjct: 245 IKHQ--LPSVIFSLEMSKTEIVMRLLSAEAKIKLGDMRSG----RMTDDDWTRLARRMSE 298
Query: 551 TFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQ 608
+DS P++ + AKA L+ +R +V+D + + V + E VS+
Sbjct: 299 ISEAPLYIDDS-PNLTMMEIRAKARRLKQKADLRMVVVDYLQLMTSGKKVESRQQE-VSE 356
Query: 609 MLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR--- 664
+K A+ V ++ R + P L D+ S D I++HR
Sbjct: 357 FSRQMKLLAKELELPVVALSQLNRGPEQRTDKKPMLADLRESGSIEQDSDMVILLHRPDA 416
Query: 665 --NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 697
DP G D + R K V + LS
Sbjct: 417 FERDDPRGGEADLILAKHRNGPTKTVTVAHQLHLS 451
>gi|317496119|ref|ZP_07954479.1| replicative DNA helicase [Gemella morbillorum M424]
gi|316913694|gb|EFV35180.1| replicative DNA helicase [Gemella morbillorum M424]
Length = 453
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 120/301 (39%), Gaps = 40/301 (13%)
Query: 429 NFRDYFDEI-DAYYHRTSGD--EFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWID 485
N RD DE+ R SG+ I TG+ +L+++ + G+L I+ P+ GK+ +
Sbjct: 156 NMRDVTDEVFKEILARMSGEGKNIAIPTGFSSLDQVIGLGKGDLVILAARPSMGKTAFAL 215
Query: 486 ALICNI------NEHAGWKFVLCSMENKVREHARKLL-------EKHIKKPFFEANYGGS 532
+ N+ +E L S+E + +++ + IKK GS
Sbjct: 216 NIALNVAGKNHRSEEEKRTVALFSLEMGADQLVSRMICSEGMLDSEKIKK--------GS 267
Query: 533 AERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL 592
+ + + E +L+ I E+ + + V K HG+ ++ID Y +L
Sbjct: 268 LDNDDLMKLETAVHFLNQKNIFI--EDSAFIKVNEVKAKCKLLKSEHGLDLVIID-YLQL 324
Query: 593 DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAH 651
+ + VS++ +K+ A+ C V ++ R + + + P + D+ S
Sbjct: 325 LQGSKRTDNRQQEVSEISRSLKQMARELECPVIALSQLSRSVESRHDKRPMMSDLRESGS 384
Query: 652 FINKCDNGIVIHR-----------NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YN 699
D ++R N E + V+V V K RN GT AF+ YN
Sbjct: 385 IEQDADIVSFLYRGDYYRSEDADENEVQEPSDVSTVEVIVAKNRNGQTGTAELAFMKRYN 444
Query: 700 R 700
+
Sbjct: 445 K 445
>gi|171059507|ref|YP_001791856.1| replicative DNA helicase [Leptothrix cholodnii SP-6]
gi|170776952|gb|ACB35091.1| replicative DNA helicase [Leptothrix cholodnii SP-6]
Length = 473
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 114/280 (40%), Gaps = 31/280 (11%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 492
D + +G+ G+ TG+ L+ + + L PG+L ++ P+ GK+ A NI
Sbjct: 188 IDRVQELAENGAGEVTGVPTGFADLDRMTSGLQPGDLIVLAARPSMGKT----AFALNIG 243
Query: 493 EHAGWK----FVLCSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEF 541
EH K V+ SME + A +++ ++H++ + G V++
Sbjct: 244 EHVAVKEQLPVVVFSMEMGASQLALRMVGSLGRIDQQHLRTGSLRDDEWGRLSE-AVDQL 302
Query: 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL--DHQRPVS 599
++ T +L E + ++ + G GL+I Y +L
Sbjct: 303 RNVSLFIDETPALTPAE---------LRARSRRQARQCGKLGLIIVDYLQLMSGSNSGGG 353
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDN 658
+ T +S++ +K A+ C V ++ R + + P + D+ S D
Sbjct: 354 ENRTAEISEISRGLKALAKELQCPVIALSQLNRSVETRTDKRPMMSDLRESGAIEQDADV 413
Query: 659 GIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
+ I+R+ + E+ ++ + K RN VGT+ AFL
Sbjct: 414 IMFIYRDEYYNKESKEPGVAEIIIGKQRNGPVGTVRLAFL 453
>gi|410457447|ref|ZP_11311256.1| replicative DNA helicase [Bacillus bataviensis LMG 21833]
gi|409925145|gb|EKN62371.1| replicative DNA helicase [Bacillus bataviensis LMG 21833]
Length = 451
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 90/430 (20%), Positives = 166/430 (38%), Gaps = 48/430 (11%)
Query: 310 EAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLK---QASRIILATD---- 362
E L + + A + S+ +P + +Q ++N ++L QA ++ T+
Sbjct: 17 EQAVLGAIFLEPSALTLASEILIPEDFYRASHQKIFNVMLHLNDQGQAVDLVTVTEELAA 76
Query: 363 -----------------GDPPGQALAEELARRVGRERCWR--VRWPKKNDVDHFKDANEV 403
G P A E AR V + R +R D + +EV
Sbjct: 77 AKLIEDIGGVSYLSDLAGSVPTAANIEYYARIVEEKSLLRRLIRTATTIASDGYSREDEV 136
Query: 404 LMYLGPGALKEVVENAELYPIMGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALN 459
L A K ++E A+ N +D +D I+ ++R G+ G+ TG+ L+
Sbjct: 137 EALLSE-AEKSILEVAQRKNAGAFHNIKDVLVRTYDNIEEMHNRV-GEITGLETGFVELD 194
Query: 460 ELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLL-- 516
+ +L IV P+ GK+ + + N+ + G + S+E + +LL
Sbjct: 195 RMTAGFQRNDLIIVGARPSVGKTAFALNVAQNVAKKTGENIAIFSLEMGAEQLVMRLLCA 254
Query: 517 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAV 576
E +I GS + LSNT I D P ++ +K
Sbjct: 255 EGNIDAQRLRT---GSLTEDDWGKLTMAMGSLSNTGIYI----DDTPGMRVGEIRSKCRR 307
Query: 577 LR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQL 633
L+ HG+ ++ID + + + VS++ +K+ A+ V ++ R +
Sbjct: 308 LKQEHGLGMILIDYLQLILGSGRSGENRQQEVSEISRSLKQLARELQVPVIALSQLSRGV 367
Query: 634 HNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTI 691
+ P + DI S D ++R+ D E+ + +++ + K RN GT+
Sbjct: 368 EQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYDKESESKNIIEIIIAKQRNGPTGTV 427
Query: 692 GEAFL-SYNR 700
AF+ YN+
Sbjct: 428 SLAFVKEYNK 437
>gi|403068939|ref|ZP_10910271.1| replicative DNA helicase [Oceanobacillus sp. Ndiop]
Length = 457
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 117/281 (41%), Gaps = 23/281 (8%)
Query: 432 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICN 490
D +D I+ H+ SGD G+ TG+ L+ + + P +L I+ P+ GK+ + + N
Sbjct: 168 DVYDNIEQL-HQQSGDVTGVPTGFHDLDRITSGFQPNDLIIIAARPSVGKTAFALNVAQN 226
Query: 491 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 550
+ + S+E + +++L E N A+R+ + Q W
Sbjct: 227 VAVKTEQNVAIFSLEMGAEQLVQRML-------CAEGNI--DAQRLRNGQL-QADDWGKL 276
Query: 551 TFSLIRCEN-----DSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTET 603
T ++ N D P ++ +K L+ HG+ ++ID + +
Sbjct: 277 TMAMGSLSNAGIYIDDSPGVRVSEIRSKCRRLKQEHGLGMILIDYLQLIQGSGSSKENRQ 336
Query: 604 EYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVI 662
+ VS++ +K A+ + ++ R + + + P + DI S D +
Sbjct: 337 QEVSEISRALKALARELKVPLIALSQLSRGVESRQDKRPMMSDIRESGSIEQDADIVGFL 396
Query: 663 HRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL-SYNR 700
+R+ D E + +++ + K RN GT+ AF+ YN+
Sbjct: 397 YRDDYYDKETEKQNIIEIIIAKQRNGPTGTVELAFVKEYNK 437
>gi|255319497|ref|ZP_05360711.1| replicative DNA helicase [Acinetobacter radioresistens SK82]
gi|262378479|ref|ZP_06071636.1| replicative DNA helicase [Acinetobacter radioresistens SH164]
gi|421464160|ref|ZP_15912853.1| replicative DNA helicase [Acinetobacter radioresistens WC-A-157]
gi|421856876|ref|ZP_16289234.1| replicative DNA helicase [Acinetobacter radioresistens DSM 6976 =
NBRC 102413]
gi|255303437|gb|EET82640.1| replicative DNA helicase [Acinetobacter radioresistens SK82]
gi|262299764|gb|EEY87676.1| replicative DNA helicase [Acinetobacter radioresistens SH164]
gi|400206534|gb|EJO37511.1| replicative DNA helicase [Acinetobacter radioresistens WC-A-157]
gi|403187623|dbj|GAB75435.1| replicative DNA helicase [Acinetobacter radioresistens DSM 6976 =
NBRC 102413]
Length = 481
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 22/265 (8%)
Query: 443 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G G+STG+ L N+ Y + G+L IV P+ GK+ + L+ ++ + ++
Sbjct: 205 KLEGSLTGLSTGFIELDNKTYGMQSGDLIIVAARPSMGKTTFAMNLVESVLFNCNLPALV 264
Query: 502 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE--- 558
SME A +L+ ++YG + G W T ++++ +
Sbjct: 265 FSMEMPADSIAMRLI----------SSYGKVHQGHLRSGKLDGDEWSKVTGTILQLQEKH 314
Query: 559 -----NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 613
+ +LP + + A G G ++ Y +L + +S++ +
Sbjct: 315 LYIDDSSALPPTELRARARRIAKQHGGKLGCIMVDYLQLMKVPGMGDNRVGEISEISRSL 374
Query: 614 KRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEA 670
K A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 375 KALAKEMQCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKES 434
Query: 671 GPIDRVQVCVRKVRNKVVGTIGEAF 695
++ + K RN +G++ AF
Sbjct: 435 KEAGTAEIIIGKQRNGPIGSVRLAF 459
>gi|428776990|ref|YP_007168777.1| replicative DNA helicase [Halothece sp. PCC 7418]
gi|428691269|gb|AFZ44563.1| replicative DNA helicase [Halothece sp. PCC 7418]
Length = 447
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 119/268 (44%), Gaps = 15/268 (5%)
Query: 434 FDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 491
+D+I+ Y++ D+ G+ + + L+ + + L P +L I+ G P+ GK+ + + NI
Sbjct: 173 YDQIEGLYYQ---DQLPGLKSSFYDLDSMTSGLQPSDLIILAGRPSMGKTAFGLNMARNI 229
Query: 492 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT 551
L S+E + +++LL K E+N S R++ +++++ + +
Sbjct: 230 AGQYKLPVALFSLEMSKEQLSQRLLASEAK---IESNRLRSG-RLSQQDYQKLSSAIGTL 285
Query: 552 FSL-IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 610
+ I ++ + ++ + A+ HG GLV+ Y +L + +S++
Sbjct: 286 SDVPIFIDDTATMTVMEMRSQARRLQAEHGQLGLVLLDYLQL--MEGGGDNRVQELSRIT 343
Query: 611 TMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--D 667
+K A+ V ++ R + + P L D+ S D ++++R+ +
Sbjct: 344 RSLKTLARELKAPVIALSQLSRGVEQRTNKRPMLSDLRESGSIEQDADLVLMLYRDAYYN 403
Query: 668 PEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
P+ D ++ + K RN GT+ F
Sbjct: 404 PDTPDRDLAELIITKHRNGPTGTVKLIF 431
>gi|291614204|ref|YP_003524361.1| replicative DNA helicase [Sideroxydans lithotrophicus ES-1]
gi|291584316|gb|ADE11974.1| replicative DNA helicase [Sideroxydans lithotrophicus ES-1]
Length = 461
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 119/295 (40%), Gaps = 49/295 (16%)
Query: 434 FDEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 491
+ I+ Y R + D G +TG+ L+ + + L PG+L IV G P+ GK+ A NI
Sbjct: 182 VERIETLYGRDNASDVTGTATGFADLDRMTSGLQPGDLVIVAGRPSMGKT----AFSINI 237
Query: 492 NEHA---GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 546
E+ G + SME + A +++ GS R+ GK
Sbjct: 238 AENVALDGKPVAIFSMEMGGAQLAMRMI--------------GSVGRLNQHTLRTGKLED 283
Query: 547 --WLSNTFSLIRCEN-----DSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNEL--DHQ 595
W T +L + D P + + ++ L +HG GLV+ Y +L
Sbjct: 284 EDWSRMTHALGLLNDAPIFIDETPGLNALELRSRTRRLHRQHGGLGLVVIDYIQLMSSPA 343
Query: 596 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP---RQLHNWVGEPPNLYDISGSAHF 652
S+ +S++ +K A+ HV +A R L + P + D+ S
Sbjct: 344 GKASENRATEISEISRSLKSLAKE--LHVPVIALSQLNRSLEQRPNKRPVMSDLRESGAI 401
Query: 653 INKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705
D + I+R+ +P++ ++ V K RN G IG L++ GEY
Sbjct: 402 EQDADLILFIYRDEVYNPDSQDKGTAEIIVGKQRN---GPIGAVRLTFR---GEY 450
>gi|254381030|ref|ZP_04996395.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194339940|gb|EDX20906.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 460
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 101/245 (41%), Gaps = 11/245 (4%)
Query: 448 EFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507
E TG L++ + PG + +V G P GKS I + N H+G ++ S+E
Sbjct: 192 EAAAVTGLTDLDQALRMRPGNVVVVAGRPAMGKSA-ITLGVALANAHSGRTTIVHSLEMG 250
Query: 508 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK- 566
E ++L + + GG A +T +++ + L + S + D P +
Sbjct: 251 RSEVTNRVLSNRARVSLHQLMEGGPA--VTDDDWRRIAPRLPD-LSALPLWMDYTPRVTP 307
Query: 567 -WVLDLAKAAVLRHGVRGLVIDPYNELDH--QRPVSQTETEYVSQMLTMVKRFAQHHACH 623
V KA + + G LV+ Y +L + QR Q+ E VS++ +K A+
Sbjct: 308 GLVRTRIKALIRQTGQVPLVVVDYVQLMYTDQRTTRQSAYERVSEVSRELKIIAEETGAV 367
Query: 624 VWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCV 680
+ A R + G+ P + D+ S I++HR DP++ + +
Sbjct: 368 IICCAQLNRGPEHRDGKKPQVSDLRDSGQLEQDASGIILLHREDAYDPDSPRAGESDLIL 427
Query: 681 RKVRN 685
K RN
Sbjct: 428 AKNRN 432
>gi|326633056|ref|YP_004306667.1| predicted DNA primase-helicase [Salmonella phage Vi06]
gi|301170529|emb|CBV65214.1| predicted DNA primase-helicase [Salmonella phage Vi06]
Length = 366
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 115/301 (38%), Gaps = 31/301 (10%)
Query: 226 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-V 283
R IS ET ++ + K G +A +NG +V+ K RD +K F +
Sbjct: 79 LTARGISKETCQKAGYWLAKVDGVVYQVADYRDQNGTIVSQKIRDKDKNFKTTGSHKSDA 138
Query: 284 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 343
+G G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 139 LFGKHLWSGGKKIVVTEGEVDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYE------ 192
Query: 344 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 403
Y Q +IIL D D G+ EE A+ + + P KDANE
Sbjct: 193 ------YFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANEC 239
Query: 404 LMYLGPGALKEVVENAELY---PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALN 459
+ + V NA + ++ + R+ E H +S + G+ +G +N
Sbjct: 240 HLNGHDREVMAQVWNAGPWIPDGVVSALSLRERIRE-----HLSSEESVGLLFSGCTGIN 294
Query: 460 E-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 518
+ GE+ +VT GKS ++ G K L +E V E ++
Sbjct: 295 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTVMGKKVGLAMLEESVEETVEDIIGL 354
Query: 519 H 519
H
Sbjct: 355 H 355
>gi|421687046|ref|ZP_16126778.1| replicative DNA helicase [Acinetobacter baumannii IS-143]
gi|404566317|gb|EKA71472.1| replicative DNA helicase [Acinetobacter baumannii IS-143]
Length = 457
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 110/255 (43%), Gaps = 17/255 (6%)
Query: 448 EFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
E GI TG+ AL N+L + G+L I+ P+ GK+ + + ++ + + S+E
Sbjct: 181 EGGIKTGFTALDNKLGEISKGDLVIIGARPSMGKTTFAQNIAADMMINQSLPVLFISIEM 240
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 566
K R+ A++L+ I G + + + + A L + + ++++ ++
Sbjct: 241 KGRQIAQRLI-SGIGGVELRKVLTGHIDPNSDDTQKVNNAALVLEKAPLMIDDNNRATVA 299
Query: 567 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT----ETEYVSQMLTMVKRFAQHHAC 622
+ AK ++G G + Y + P+++ + + ++ +KR A C
Sbjct: 300 TIRRSAKKVQAKYGKIGAIFVDY--IQKVTPLTKNNFGRSDKDIGEISNELKRMAGDFDC 357
Query: 623 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDP-EAGPIDRV 676
V +A R L N + P D+ S D + I+R N+D EAG
Sbjct: 358 PVIALAQLNRNLENRPNKRPVNADLKESGDLEQDADIIMFIYRDEVYNKDSKEAGT---A 414
Query: 677 QVCVRKVRNKVVGTI 691
++ + K RN +GT+
Sbjct: 415 EIIIGKARNGSIGTV 429
>gi|119570178|gb|EAW49793.1| progressive external ophthalmoplegia 1, isoform CRA_a [Homo
sapiens]
Length = 531
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 78/366 (21%), Positives = 140/366 (38%), Gaps = 56/366 (15%)
Query: 146 KCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGW---KGSTSALVDNNRSQSSLKK---F 199
+ G S SLF+D+ + M A+ W + S D R L K F
Sbjct: 89 QLKGQTGVTTSFSLFIDKTTGHFLCMTSLAEGSWEDFQASVEGRGDGAREGFLLSKAPEF 148
Query: 200 SKMKTIREITEDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGHEVVIAF 254
+ +R I ++ L L ++ A+ + ++ +TL+R V R +V F
Sbjct: 149 EDSEEVRRIWNRAIPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPARSLV--F 206
Query: 255 PYWRNG-------KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDI-EGESDIIIVEGE 302
P++ G KL+ K + + + +GL I ++++++ E
Sbjct: 207 PWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLISRRDAEVVLTSRE 266
Query: 303 MDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATD 362
+D L++ ++ L +++P G + + +P YL+Q RI+
Sbjct: 267 LDSLALNQSTGLPTLTLPRGT-TCLPPALLP----------------YLEQFRRIVFWLG 309
Query: 363 GDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422
D A+ AR++ +RC+ VR P + N G L ++ A
Sbjct: 310 DDLRSWEAAKLFARKLNPKRCFLVR-PGDQQPRPLEALN------GGFNLSRILRTALPA 362
Query: 423 PIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL----PGELTIVTGVPNS 478
+ +FR +E+ S E W +L +L GELT+ TG S
Sbjct: 363 WHKSIVSFRQLREEV---LGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGS 419
Query: 479 GKSEWI 484
GK+ +I
Sbjct: 420 GKTTFI 425
>gi|197120506|ref|YP_002132457.1| replicative DNA helicase [Anaeromyxobacter sp. K]
gi|196170355|gb|ACG71328.1| replicative DNA helicase [Anaeromyxobacter sp. K]
Length = 473
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 108/270 (40%), Gaps = 39/270 (14%)
Query: 450 GISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGW----KFVLCSM 504
G+ TG + L+ + PG LT++ P+ GK+ A NI HA K S+
Sbjct: 203 GVPTGIQTLDRNTLGLQPGTLTVLAARPSVGKT----AFALNIATHAATKAQRKVAFFSL 258
Query: 505 ENKVREHARKLLEKHIKKPFFEANYGGSA----ERMTVEEFEQGKA--WLSNTFSLIRCE 558
E + A ++L K + + + G + +++ + G A WL + F L E
Sbjct: 259 EMPADQLALRMLASEGKLDWRKLSQGQLSRHDWDKLATQADRIGAASLWLDDNFVLTPVE 318
Query: 559 NDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRP--VSQTETEYVSQMLTMVK 614
S K L+ +G LV+ Y +L H +Q+ + ++ + +K
Sbjct: 319 LRS-----------KCRKLKRENGGLDLVMIDYLQLMHAPSDRSNQSREQEIATISRSLK 367
Query: 615 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPE 669
A+ C + ++ R + GEPP L D+ S D + +HR N+D +
Sbjct: 368 SLAKELECPIVALSQLNRSVEKRKGEPPMLSDLRESGAIEQDADIVMFLHRAEEDNKDVQ 427
Query: 670 AGPID----RVQVCVRKVRNKVVGTIGEAF 695
G VQ+ V K R TI F
Sbjct: 428 QGTASGDTLPVQLIVAKQRQGPTCTIDLVF 457
>gi|86156509|ref|YP_463294.1| primary replicative DNA helicase [Anaeromyxobacter dehalogenans
2CP-C]
gi|85773020|gb|ABC79857.1| primary replicative DNA helicase [Anaeromyxobacter dehalogenans
2CP-C]
Length = 473
Score = 43.5 bits (101), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 109/270 (40%), Gaps = 39/270 (14%)
Query: 450 GISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGW----KFVLCSM 504
G+ TG + L+ + PG LT++ P+ GK+ A NI HA K S+
Sbjct: 203 GVPTGIQTLDRNTLGLQPGTLTVLAARPSVGKT----AFALNIATHAATKAQRKVAFFSL 258
Query: 505 ENKVREHARKLLEKHIKKPFFEANYGGSA----ERMTVEEFEQGKA--WLSNTFSLIRCE 558
E + A ++L K + + + G + +++ + G A WL + F L E
Sbjct: 259 EMPSDQLALRMLASEGKLDWRKLSQGQLSRHDWDKLATQADRIGAANLWLDDNFVLTPVE 318
Query: 559 NDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRP--VSQTETEYVSQMLTMVK 614
S K L+ +G LV+ Y +L H +Q+ + ++ + +K
Sbjct: 319 LRS-----------KCRKLKRENGGLDLVMIDYLQLMHAPSDRSNQSREQEIATISRSLK 367
Query: 615 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPE 669
A+ C + ++ R + GEPP L D+ S D + +HR N+D +
Sbjct: 368 SLAKELECPIVALSQLNRSVEKRKGEPPMLSDLRESGAIEQDADIVMFLHRAEEDNKDVQ 427
Query: 670 ----AGPIDRVQVCVRKVRNKVVGTIGEAF 695
AG VQ+ V K R TI F
Sbjct: 428 QGTAAGDTLPVQLIVAKQRQGPTCTIDLVF 457
>gi|34365099|emb|CAE45905.1| hypothetical protein [Homo sapiens]
Length = 531
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 78/366 (21%), Positives = 140/366 (38%), Gaps = 56/366 (15%)
Query: 146 KCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGW---KGSTSALVDNNRSQSSLKK---F 199
+ G S SLF+D+ + M A+ W + S D R L K F
Sbjct: 89 QLKGQTGVTTSFSLFIDKTTGHFLCMTSLAEGSWEDFQASVEGRGDGAREGFLLSKAPEF 148
Query: 200 SKMKTIREITEDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGHEVVIAF 254
+ +R I ++ L L ++ A+ + ++ +TL+R V R +V F
Sbjct: 149 EDSEEVRRIWNRAIPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPARSLV--F 206
Query: 255 PYWRNG-------KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG-ESDIIIVEGE 302
P++ G KL+ K + + + +GL I ++++++ E
Sbjct: 207 PWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLISRRDAEVVLTSRE 266
Query: 303 MDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATD 362
+D L++ ++ L +++P G + + +P YL+Q RI+
Sbjct: 267 LDSLALNQSTGLPTLTLPRGT-TCLPPALLP----------------YLEQFRRIVFWLG 309
Query: 363 GDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422
D A+ AR++ +RC+ VR P + N G L ++ A
Sbjct: 310 DDLRSWEAAKLFARKLNPKRCFLVR-PGDQQPRPLEALN------GGFDLSRILRTALPA 362
Query: 423 PIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL----PGELTIVTGVPNS 478
+ +FR +E+ S E W +L +L GELT+ TG S
Sbjct: 363 WHKSIVSFRQLREEV---LGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGS 419
Query: 479 GKSEWI 484
GK+ +I
Sbjct: 420 GKTTFI 425
>gi|415704666|ref|ZP_11459937.1| replicative DNA helicase [Gardnerella vaginalis 75712]
gi|388051388|gb|EIK74412.1| replicative DNA helicase [Gardnerella vaginalis 75712]
Length = 491
Score = 43.5 bits (101), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 111/260 (42%), Gaps = 20/260 (7%)
Query: 448 EFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
E GI TG+R ++++ L PG++ +V G P GKS + H ++ S+E
Sbjct: 204 EKGIPTGFRDIDDMTQGLQPGQMVVVAGRPAMGKSTLGIDFARSAALHHNMTTIVFSLEM 263
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 566
E A++++ P A + G++E +T + + + A+ S +DS P++
Sbjct: 264 NKLELAQRIIAAETDIP-MTAMHRGTSEDITTDRWTKLNAFWSKMKDAPLFIDDS-PNMS 321
Query: 567 WVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624
+ AK L+ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 322 LMEIRAKCRRLKQTNDLKLVVIDYLQLMTSGKKVESRQQE-VSEFSRALKLLAKELEVPV 380
Query: 625 WFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRV 676
++ P ++ + P L D+ S D ++HR N++ G D
Sbjct: 381 VALSQLNRGPEMRND---KKPQLSDLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD-- 435
Query: 677 QVCVRKVRNKVVGTIGEAFL 696
+ + K RN T AFL
Sbjct: 436 -IIMAKHRNGPTETFNLAFL 454
>gi|417546817|ref|ZP_12197903.1| replicative DNA helicase [Acinetobacter baumannii OIFC032]
gi|421670515|ref|ZP_16110512.1| replicative DNA helicase [Acinetobacter baumannii OIFC099]
gi|400384705|gb|EJP43383.1| replicative DNA helicase [Acinetobacter baumannii OIFC032]
gi|410384982|gb|EKP37479.1| replicative DNA helicase [Acinetobacter baumannii OIFC099]
Length = 457
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 110/255 (43%), Gaps = 17/255 (6%)
Query: 448 EFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
E GI TG+ AL N+L + G+L I+ P+ GK+ + + ++ + + S+E
Sbjct: 181 EGGIKTGFTALDNKLGEISKGDLVIIGARPSMGKTTFAQNIAADMMINQSLPVLFISIEM 240
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 566
K R+ A++L+ I G + + + + A L + + ++++ ++
Sbjct: 241 KGRQIAQRLI-SGIGGVELRKVLTGHIDPNSDDTQKVNNAALVLEKAPLMIDDNNRATVA 299
Query: 567 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT----ETEYVSQMLTMVKRFAQHHAC 622
+ AK ++G G + Y + P+++ + + ++ +KR A C
Sbjct: 300 TIRRSAKKVQAKYGKIGAIFVDY--IQKVTPLTKNNFGRSDKDIGEISNELKRMAGDFDC 357
Query: 623 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDP-EAGPIDRV 676
V +A R L N + P D+ S D + I+R N+D EAG
Sbjct: 358 PVIALAQLNRNLENRPNKRPVNADLKESGDLEQDADIIMFIYRDEVYNKDSKEAGT---A 414
Query: 677 QVCVRKVRNKVVGTI 691
++ + K RN +GT+
Sbjct: 415 EIIIGKARNGSIGTV 429
>gi|160897376|ref|YP_001562958.1| hypothetical protein Daci_1933 [Delftia acidovorans SPH-1]
gi|160362960|gb|ABX34573.1| phage-related hypothetical protein [Delftia acidovorans SPH-1]
Length = 323
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 87/224 (38%), Gaps = 24/224 (10%)
Query: 455 WRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK----VRE 510
WR +L PGE+T+ G +GKS + ++ G + + S E K +
Sbjct: 52 WRKTAQLVQFRPGEVTLWGGANGNGKSLVTGQVALSLCGQ-GERVAIASFEMKPIKTLER 110
Query: 511 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLD 570
R+ + P + N G +R+ ++ +EQ + W N L + + V
Sbjct: 111 MGRQWSGTNPAHPAYAGNDDG--QRILIDTYEQFRDWTDNKLWLY--DQQGTVTTAQVCA 166
Query: 571 LAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQML-----TMVKRFAQHHACHVW 625
+ + A + V V+D + Q E +Y Q L T + R H +
Sbjct: 167 VVRYAAVELKVTHFVVDSLMK------CVQGEDDYNGQKLFVDELTAIARDHGIHIHLIH 220
Query: 626 FVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
+ P + PN YD+ GS ++ DN I + RN+ E
Sbjct: 221 HIKKPASEDH----KPNKYDMKGSGAITDQVDNVIAVWRNKPKE 260
>gi|34497957|ref|NP_902172.1| replicative DNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34103812|gb|AAQ60173.1| replicative DNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 468
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 123/314 (39%), Gaps = 63/314 (20%)
Query: 409 PGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-P 466
PG LKEVVE ID Y R + DE G+ TG+ L+ + L P
Sbjct: 174 PGLLKEVVER------------------IDMLYSRDNPDEVTGVPTGFIDLDAKTSGLQP 215
Query: 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWK----FVLCSMENKVREHARKLLEKHIKK 522
G+L IV G P+ GK+ A NI EH + + SME + ++L
Sbjct: 216 GDLIIVAGRPSMGKT----AFSMNIAEHVAVETHLPVAVFSMEMGGAQLVMRML------ 265
Query: 523 PFFEANYGGSAERMTVEEFEQGKA----WLSNTFSLIRCEN-----DSLPSIK--WVLDL 571
GS R+ GK W T+++ + + D P++ +
Sbjct: 266 --------GSVGRLDQHVLRTGKLGDDDWQKLTYAIGKLSDAPMYIDETPALTALELRAR 317
Query: 572 AKAAVLRHGVR-GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630
A+ +HG + GL++ Y +L T + ++ +K A+ V ++
Sbjct: 318 ARRLARQHGGKLGLIVIDYLQLMSGSGRGDNRTAELGEISRGLKGLAKELQVPVIALS-- 375
Query: 631 RQLHNWVGEPPN----LYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVR 684
QL V + PN + D+ S D I ++R+ +P++ + + K R
Sbjct: 376 -QLSRAVEQRPNKRPMMSDLRESGAIEQDADLIIFMYRDEYYNPDSPDKGLAEAIIGKHR 434
Query: 685 NKVVGTIGEAFLSY 698
N G + AF+ +
Sbjct: 435 NGPTGAVRLAFIGH 448
>gi|421487320|ref|ZP_15934795.1| hypothetical protein QWC_31583, partial [Achromobacter piechaudii
HLE]
gi|400194425|gb|EJO27486.1| hypothetical protein QWC_31583, partial [Achromobacter piechaudii
HLE]
Length = 211
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 222 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFN--KKFWQEKD 279
+R + R ++ ET+ ++ ++ + FPY R G+ +N KYR + K QE
Sbjct: 120 VRDWLMSRGLTEETIAAFQIAEQERNGKAYAVFPYLREGEFINAKYRCVSDKKDMRQEGG 179
Query: 280 TEKVFYGLDDIEGES-DIIIVEGEMDKLS 307
E +G I+ ++ + I EGE+D ++
Sbjct: 180 AEPCLFGWQLIDPKTRTVAIFEGEIDAMT 208
>gi|170073393|ref|XP_001870367.1| pom1 [Culex quinquefasciatus]
gi|167869989|gb|EDS33372.1| pom1 [Culex quinquefasciatus]
Length = 375
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 101/257 (39%), Gaps = 24/257 (9%)
Query: 455 WRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 510
WR L +L G ELT++TG GK+ ++ ++ G + S E +
Sbjct: 115 WRRYPTLNKLLKGHRKGELTVLTGPTGCGKTTFMSDYSLDLALQ-GVSTLWGSFEIRNTR 173
Query: 511 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLD 570
A LL + +P + S +EFEQ L F + IK V+D
Sbjct: 174 LATTLLRQMAGRPL---DVNLSEFDHWADEFEQ----LPVYFMTFHGQQ----PIKVVMD 222
Query: 571 LAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFVA 628
+ A H ++ ++ID + S+ Y Q ++ + FA CHV V
Sbjct: 223 AIEHAQYVHDIQHVIIDNLQFMMGVSEESKHLDRYWKQDAIIASFRTFATRKNCHVTLVI 282
Query: 629 HPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVV 688
HPR+ + + I G A + DN ++I R +Q+ +N+
Sbjct: 283 HPRKERD--TDDLTTSSIFGGAKASQEADNVLIIQDKRLTSVRGKKYLQIA----KNRYS 336
Query: 689 GTIGEAFLSYNRVTGEY 705
G +G L +++++ Y
Sbjct: 337 GDLGIMPLDFDKLSLSY 353
>gi|167583630|ref|YP_001671820.1| primase/helicase [Enterobacteria phage phiEco32]
gi|164375468|gb|ABY52876.1| primase/helicase [Enterobacteria phage phiEco32]
Length = 596
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 117/541 (21%), Positives = 207/541 (38%), Gaps = 84/541 (15%)
Query: 205 IREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVN 264
+RE+ +D LEL P G EL + +S R + Q FP R+G +V
Sbjct: 69 LREVLDDCLEL-PQG-ELTRRLIPKAVSERFECRIGLSQTDGQTPDSYFFPRERDGNIVG 126
Query: 265 CKYRDFN-KKFW-----QEKD-------------TEKVFYGLDDIEGESDIIIVEGEMDK 305
+ + + KKF+ +E D +K+F D + S ++ +
Sbjct: 127 YEVKLLDSKKFYYVGSVKEADLFGMAQAQRGDVYNKKLFIFEDPLSCMSGFHVLTAFTNA 186
Query: 306 LSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDP 365
+++ A CVS+P GA S S V S +D ++ ++L D D
Sbjct: 187 TNIKPA----CVSLPFGAGSISS---VLSRNRD-----------FVNGFEEVVLCMDNDD 228
Query: 366 PGQ-ALAE--ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422
G+ AL + L V R + +P KDAN++L+ G G EL+
Sbjct: 229 AGEIALTKGRSLFPHVKFARIPKGTFPYNGVEKEIKDANDMLLS-GRGQ--------ELF 279
Query: 423 PIMGLFNFRD-------YFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTG 474
I+ R+ FD +D + E+GI W+ LNE+ + + GE+ + G
Sbjct: 280 NILKYSAKRESPAGAVTIFDCLDDALKKA---EWGIPYPWKTLNEMTFGIRWGEVVAIGG 336
Query: 475 VPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE 534
SGK+ L+ ++ G+ +E KV + + K PF + E
Sbjct: 337 GVGSGKTLIAHELVAHLCLEHGFNGGGFFLEEKVGMSVKNIAGKSASIPFHRPDVEYDEE 396
Query: 535 RMTVEEFEQG-KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593
+ E K +L + F E+ WV++ ++ + LV
Sbjct: 397 DLRNEALRYADKFFLYDNFGQNEWEDIKQCIRFWVVENQCKFIILDNITALV-------S 449
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN-------LYDI 646
H P S+ TE +S++ + + + + ++H L+ G P+
Sbjct: 450 HLTP-SEINTE-ISKIASELAGMCKELDFTAFVLSH---LNAPAGGAPHEEGGQVREVQF 504
Query: 647 SGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 706
+GS + C +I RD +A + + +R ++ + G G + Y TG +
Sbjct: 505 TGSRSLMRWCQ--CIIGFERDKQADGLAKNLSVIRLLKERNYGQTGVCYTKYISETGRLV 562
Query: 707 D 707
+
Sbjct: 563 E 563
>gi|415711229|ref|ZP_11464042.1| replicative DNA helicase [Gardnerella vaginalis 55152]
gi|388058540|gb|EIK81330.1| replicative DNA helicase [Gardnerella vaginalis 55152]
Length = 516
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 18/259 (6%)
Query: 448 EFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
E G+ TG+R ++++ L PG++ +V G P GKS + H ++ S+E
Sbjct: 229 EKGVPTGFRDIDDMTQGLQPGQMVVVAGRPAMGKSTLGIDFARSAALHHNMTTIVFSLEM 288
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 566
E A++++ P A + G++E +T + + + A+ S +DS P++
Sbjct: 289 NKLELAQRIIAAETDIP-MTAMHRGTSEDITTDRWTKLNAFWSKMKDAPLFIDDS-PNMS 346
Query: 567 WVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624
+ AK L+ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 347 LMEIRAKCRRLKQTNDLKLVVIDYLQLMTSGKKVESRQQE-VSEFSRALKLLAKELEVPV 405
Query: 625 WFVAHPR---QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRVQ 677
++ ++ N + P L D+ S D ++HR N++ G D
Sbjct: 406 VALSQLNRGPEMRN--DKKPQLSDLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD--- 460
Query: 678 VCVRKVRNKVVGTIGEAFL 696
+ + K RN T AFL
Sbjct: 461 IIMAKHRNGPTETFNLAFL 479
>gi|74193538|dbj|BAE20696.1| unnamed protein product [Mus musculus]
Length = 308
Score = 43.1 bits (100), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 564 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623
SI+ V+D + AV + V +VID + +S ++ ++FA ++CH
Sbjct: 117 SIRSVIDTMQHAVYVYDVCHVVIDNLQFMMGHEQLSSDRIAAQDYIVGAFRKFATDNSCH 176
Query: 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRK 682
V V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 177 VTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS--- 230
Query: 683 VRNKVVGTIGEAFLSYNR 700
+N+ G +G L +N+
Sbjct: 231 -KNRFDGDVGVFPLEFNK 247
>gi|365827077|ref|ZP_09368951.1| replicative DNA helicase [Actinomyces sp. oral taxon 849 str.
F0330]
gi|365265438|gb|EHM95201.1| replicative DNA helicase [Actinomyces sp. oral taxon 849 str.
F0330]
Length = 474
Score = 43.1 bits (100), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 104/269 (38%), Gaps = 18/269 (6%)
Query: 436 EIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEH 494
EI+A +R +G G+ TG+ L+EL L PG++ IV P GKS + + H
Sbjct: 194 EIEAAQNRENGALTGVPTGFIELDELTGGLHPGQMIIVAARPAMGKSTLAVDFCRSASIH 253
Query: 495 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
G S+E E ++L + E + +SN
Sbjct: 254 HGITSCYFSLEMGRMELMMRMLAAESSVDMNKLRGSRQMEDRDWTDVAVAYNPVSNAPLF 313
Query: 555 I-RCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLT 611
I N ++P I+ +KA ++ H + +VID + R V + E VS+
Sbjct: 314 IDDSPNLTMPEIR-----SKALRMKQQHNLGLMVIDYLQLMSSGRRVESRQQE-VSEFSR 367
Query: 612 MVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NR 666
+K A+ V VA R G P + D+ S D I++HR N
Sbjct: 368 SLKLLAKELEIPVIAVAQLNRGPEQRTGNKPQMSDLRESGSLEQDADIIILLHRPEYYNN 427
Query: 667 DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+ G D + V K RN TI AF
Sbjct: 428 EDRPGEAD---IIVAKHRNGQTRTIPVAF 453
>gi|163846528|ref|YP_001634572.1| replicative DNA helicase [Chloroflexus aurantiacus J-10-fl]
gi|222524314|ref|YP_002568785.1| replicative DNA helicase [Chloroflexus sp. Y-400-fl]
gi|163667817|gb|ABY34183.1| replicative DNA helicase [Chloroflexus aurantiacus J-10-fl]
gi|222448193|gb|ACM52459.1| replicative DNA helicase [Chloroflexus sp. Y-400-fl]
Length = 451
Score = 43.1 bits (100), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 419 AELYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PG 467
AEL+ + N +D+ F +I++ R G+ G+ TG+ L+EL L P
Sbjct: 148 AELFAVSQRRNNQDFVHIGRVVNTLFSQIESMQER-RGEVIGVPTGYHDLDELTGGLQPS 206
Query: 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKH 519
+L I+ P+ GK+ +L N+ HA + S+E + +++L H
Sbjct: 207 DLIILAARPSVGKTSLALSLAYNVAFHANGTVAIFSLEMSREQLVQRMLAMH 258
>gi|312879781|ref|ZP_07739581.1| primary replicative DNA helicase [Aminomonas paucivorans DSM 12260]
gi|310783072|gb|EFQ23470.1| primary replicative DNA helicase [Aminomonas paucivorans DSM 12260]
Length = 450
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 141/343 (41%), Gaps = 37/343 (10%)
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMY--LGPGALKEVVENAELYPIMGLFNFRDYF 434
+VG E R+ + ++ D + D E L++ G G+ V L ++G+ F
Sbjct: 120 QVGAE-IARLGYAEERDREETLDEAERLVFDIAGSGSTSTV---RPLRQVLGV-----TF 170
Query: 435 DEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINE 493
EI+ +H+ + G+ TG+ + L L PG L I+ P+ GK+ AL NI +
Sbjct: 171 REIEERFHQGA-LVTGVPTGYDDFDRLTGGLQPGSLNILAARPSMGKT----ALALNIAQ 225
Query: 494 HA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS 549
+A G ++ S+E + A++LL K + G E E LS
Sbjct: 226 NAAVRGGLPVLVFSLEMGAEQLAQRLLGSEAKVNIHDLRTGRFHES-AWENLAAAAGTLS 284
Query: 550 NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD--HQRPVS-QTETEYV 606
I ++ SL S + + + + G GLV+ Y +L QR S Q E +
Sbjct: 285 EAPLFI--DDSSLLSTLELRARCRRFLAQQGSLGLVVVDYLQLMSLSQRVDSKQQEVAEI 342
Query: 607 SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-- 664
S+ L V R + + ++ +L N + P L D+ S D ++++R
Sbjct: 343 SKSLKGVAREFRVPVLALSQLSRAVELRN--DKRPQLSDLRDSGAIEQDADLVVLLYRPG 400
Query: 665 ---NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFL-SYNRVTG 703
EA P + + V K RN G + FL Y R G
Sbjct: 401 YYEREQGEANP--QAEAIVAKHRNGPTGKVDLIFLREYARFEG 441
>gi|415714000|ref|ZP_11465380.1| replicative DNA helicase [Gardnerella vaginalis 1400E]
gi|388059358|gb|EIK82098.1| replicative DNA helicase [Gardnerella vaginalis 1400E]
Length = 516
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 18/259 (6%)
Query: 448 EFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
E G+ TG+R ++++ L PG++ +V G P GKS + H ++ S+E
Sbjct: 229 EKGVPTGFRDIDDMTQGLQPGQMVVVAGRPAMGKSTLGIDFARSAALHHNMTTIVFSLEM 288
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 566
E A++++ P A + G++E +T + + + A+ S +DS P++
Sbjct: 289 NKLELAQRIIAAETDIP-MTAMHRGTSEDITTDRWTKLNAFWSKMKDAPLFIDDS-PNMS 346
Query: 567 WVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624
+ AK L+ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 347 LMEIRAKCRRLKQTNDLKLVVIDYLQLMTSGKKVESRQQE-VSEFSRALKLLAKELEVPV 405
Query: 625 WFVAHPR---QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRVQ 677
++ ++ N + P L D+ S D ++HR N++ G D
Sbjct: 406 VALSQLNRGPEMRN--DKKPQLSDLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD--- 460
Query: 678 VCVRKVRNKVVGTIGEAFL 696
+ + K RN T AFL
Sbjct: 461 IIMAKHRNGPTETFNLAFL 479
>gi|385802274|ref|YP_005838677.1| replicative DNA helicase [Gardnerella vaginalis HMP9231]
gi|417555955|ref|ZP_12207017.1| replicative DNA helicase [Gardnerella vaginalis 315-A]
gi|333392929|gb|AEF30847.1| replicative DNA helicase [Gardnerella vaginalis HMP9231]
gi|333603278|gb|EGL14696.1| replicative DNA helicase [Gardnerella vaginalis 315-A]
Length = 486
Score = 42.7 bits (99), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 111/260 (42%), Gaps = 20/260 (7%)
Query: 448 EFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
E G+ TG+R ++++ L PG++ +V G P GKS + H ++ S+E
Sbjct: 199 EKGVPTGFRDIDDMTQGLQPGQMVVVAGRPAMGKSTLGIDFARSAALHHNMTTIVFSLEM 258
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 566
E A++++ P A + G++E +T + + + A+ S +DS P++
Sbjct: 259 NKLELAQRIIAAETDIP-MTAMHRGTSEDITTDRWTKLNAFWSKMKDAPLFIDDS-PNMS 316
Query: 567 WVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624
+ AK L+ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 317 LMEIRAKCRRLKQTNDLKLVVIDYLQLMTSGKKVESRQQE-VSEFSRALKLLAKELEVPV 375
Query: 625 WFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRV 676
++ P ++ + P L D+ S D ++HR N++ G D
Sbjct: 376 VALSQLNRGPEMRND---KKPQLSDLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD-- 430
Query: 677 QVCVRKVRNKVVGTIGEAFL 696
+ + K RN T AFL
Sbjct: 431 -IIMAKHRNGPTETFNLAFL 449
>gi|332212594|ref|XP_003255404.1| PREDICTED: twinkle protein, mitochondrial isoform 3 [Nomascus
leucogenys]
Length = 230
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 564 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623
SI+ V+D + AV + + +VID + +S ++ + ++FA + CH
Sbjct: 39 SIRTVIDTMQHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIIGVFRKFATDNNCH 98
Query: 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRK 682
V V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 99 VTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS--- 152
Query: 683 VRNKVVGTIGEAFLSYNR 700
+N+ G +G L +N+
Sbjct: 153 -KNRFDGDVGVFPLEFNK 169
>gi|407932095|ref|YP_006847738.1| replicative DNA helicase [Acinetobacter baumannii TYTH-1]
gi|407900676|gb|AFU37507.1| replicative DNA helicase [Acinetobacter baumannii TYTH-1]
Length = 359
Score = 42.7 bits (99), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 116/277 (41%), Gaps = 34/277 (12%)
Query: 450 GISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508
G++TG+ AL+ + + G+L ++ P+ GK+ + L NI + ++ S+E K
Sbjct: 83 GVNTGFVALDHRIGEINNGDLVVIAARPSMGKTAFALNLATNIATNLRKPVLIESIEMK- 141
Query: 509 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFE-QGKAWLSNTFSLIRCEN------DS 561
R + K I G + ++ E G+ W T + +N D
Sbjct: 142 ----RDAITKRIISSV------GDLKLSKIKNAELDGEDWTCFTEAAKVIQNSPLMIMDG 191
Query: 562 LPSIKWVLDLAKAAVLRHGVRGLVIDPYNE--LDHQRPVSQTETEYVSQMLTMVKRFAQH 619
+I + A+ G G + Y + + P S +E + ++ + +KR A
Sbjct: 192 AVTISDIRKHARKVRSEEGSLGAIFVDYLQKIITPHLPASASENDRLTYISDSLKRVAME 251
Query: 620 HACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPID 674
C V+ ++ RQL N + P + D+ GS D + ++R N + P
Sbjct: 252 FNCPVFALSQLSRQLENRSDKRPIMSDLRGSGAIEQDADVILFLYRDEYYNGEKSKTP-G 310
Query: 675 RVQVCVRKVRNKVVGTIGEAF----LSYNRVTGEYMD 707
++V KVR+ G++G+ F L Y+R + + D
Sbjct: 311 LLEVNAAKVRD---GSVGKTFLCSELDYSRFSNVHSD 344
>gi|308235263|ref|ZP_07666000.1| replicative DNA helicase [Gardnerella vaginalis ATCC 14018 = JCM
11026]
gi|311113980|ref|YP_003985201.1| replicative DNA helicase DnaB [Gardnerella vaginalis ATCC 14019]
gi|310945474|gb|ADP38178.1| replicative DNA helicase DnaB [Gardnerella vaginalis ATCC 14019]
Length = 491
Score = 42.7 bits (99), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 111/260 (42%), Gaps = 20/260 (7%)
Query: 448 EFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
E G+ TG+R ++++ L PG++ +V G P GKS + H ++ S+E
Sbjct: 204 EKGVPTGFRDIDDMTQGLQPGQMVVVAGRPAMGKSTLGIDFARSAALHHNMTTIVFSLEM 263
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 566
E A++++ P A + G++E +T + + + A+ S +DS P++
Sbjct: 264 NKLELAQRIIAAETDIP-MTAMHRGTSEDITTDRWTKLNAFWSKMKDAPLFIDDS-PNMS 321
Query: 567 WVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624
+ AK L+ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 322 LMEIRAKCRRLKQTNDLKLVVIDYLQLMTSGKKVESRQQE-VSEFSRALKLLAKELEVPV 380
Query: 625 WFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRV 676
++ P ++ + P L D+ S D ++HR N++ G D
Sbjct: 381 VALSQLNRGPEMRND---KKPQLSDLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD-- 435
Query: 677 QVCVRKVRNKVVGTIGEAFL 696
+ + K RN T AFL
Sbjct: 436 -IIMAKHRNGPTETFNLAFL 454
>gi|422023367|ref|ZP_16369872.1| P4 family phage/plasmid primase [Providencia sneebia DSM 19967]
gi|414094135|gb|EKT55805.1| P4 family phage/plasmid primase [Providencia sneebia DSM 19967]
Length = 818
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 249 EVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDT-----EKVFYGLDDIEGESDIIIVEGEM 303
E V +P++ NG++V ++D K F ++ E +YG +E I +VEGE
Sbjct: 195 EGVYVYPHFDNGRIVRFTFKDPKKTFKYQQPKKYWLPEAHWYGQQTLEKPGTIALVEGEN 254
Query: 304 DKLSMEEAGFLNCVSVPDGAPS 325
D L++ EAG+ V G+ S
Sbjct: 255 DALTLIEAGYTGPVLASIGSLS 276
>gi|415703722|ref|ZP_11459473.1| replicative DNA helicase [Gardnerella vaginalis 284V]
gi|415706191|ref|ZP_11461265.1| replicative DNA helicase [Gardnerella vaginalis 0288E]
gi|388051028|gb|EIK74053.1| replicative DNA helicase [Gardnerella vaginalis 284V]
gi|388055083|gb|EIK78004.1| replicative DNA helicase [Gardnerella vaginalis 0288E]
Length = 491
Score = 42.7 bits (99), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 111/260 (42%), Gaps = 20/260 (7%)
Query: 448 EFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
E G+ TG+R ++++ L PG++ +V G P GKS + H ++ S+E
Sbjct: 204 EKGVPTGFRDIDDMTQGLQPGQMVVVAGRPAMGKSTLGIDFARSAALHHNMTTIVFSLEM 263
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 566
E A++++ P A + G++E +T + + + A+ S +DS P++
Sbjct: 264 NKLELAQRIIAAETDIP-MTAMHRGTSEDITTDRWTKLNAFWSKMKDAPLFIDDS-PNMS 321
Query: 567 WVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624
+ AK L+ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 322 LMEIRAKCRRLKQTNDLKLVVIDYLQLMTSGKKVESRQQE-VSEFSRALKLLAKELEVPV 380
Query: 625 WFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRV 676
++ P ++ + P L D+ S D ++HR N++ G D
Sbjct: 381 VALSQLNRGPEMRND---KKPQLSDLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD-- 435
Query: 677 QVCVRKVRNKVVGTIGEAFL 696
+ + K RN T AFL
Sbjct: 436 -IIMAKHRNGPTETFNLAFL 454
>gi|170065465|ref|XP_001867950.1| pom1 [Culex quinquefasciatus]
gi|167882528|gb|EDS45911.1| pom1 [Culex quinquefasciatus]
Length = 660
Score = 42.7 bits (99), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 103/257 (40%), Gaps = 24/257 (9%)
Query: 455 WRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 510
WR L +L G ELT++TG GK+ ++ ++ G + S E +
Sbjct: 400 WRRYPTLNKLLKGHRKGELTVLTGPTGCGKTTFMSDYSLDLALQ-GVSTLWGSFEIRNTR 458
Query: 511 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLD 570
A LL + +P + S +EFEQ + TF + P IK V+D
Sbjct: 459 LATTLLRQMAGRPL---DVNLSEFDHWADEFEQLPVYFM-TF------HGQQP-IKVVMD 507
Query: 571 LAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFVA 628
+ A H ++ ++ID + S+ Y Q ++ + FA CHV V
Sbjct: 508 AIEHAQYVHDIQHVIIDNLQFMMGVSEESKHLDRYWKQDAIIASFRTFATRKNCHVTLVI 567
Query: 629 HPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVV 688
HPR+ + + I G A + DN ++I R +QV +N+
Sbjct: 568 HPRKERD--TDDLTTSSIFGGAKASQEADNVLIIQDKRLTSVRGKKYLQV----AKNRYS 621
Query: 689 GTIGEAFLSYNRVTGEY 705
G +G L +++++ Y
Sbjct: 622 GDLGIMPLDFDKLSLSY 638
>gi|161617950|ref|YP_001595430.1| helicase/primase [Enterobacteria phage phiEcoM-GJ1]
gi|150416369|gb|ABR68747.1| helicase/primase [Enterobacteria phage phiEcoM-GJ1]
Length = 587
Score = 42.7 bits (99), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 114/535 (21%), Positives = 202/535 (37%), Gaps = 85/535 (15%)
Query: 129 LDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDG-FSAVWMCFRAKCGWKGSTSALV 187
++I +C +++ + P C + L + + DE G S CF CG LV
Sbjct: 1 MNIKQCVAKIKHDV--PGCKSTSGKSLQVWVNTDESGNTSYSGFCF--ACG------VLV 50
Query: 188 DNNRSQSSLKKFSK--MKTIREITEDSLELE---PLGNELRAYFAERLISAETLRRNRVM 242
N + +KF + +KT EI + E+ PL + R E +A R++
Sbjct: 51 PNPYGTDA-EKFPEVHIKTPEEIQAEVDEITSCPPLDLDHRGIEPEFWKAAGV----RLL 105
Query: 243 QKRHGHEV--VIAFPYWRNGKLVNCKYRDFNKK-FWQEKDTEK----VFYGLDDIEGESD 295
+ + +A Y +NGKLV K + NKK W DT+ F I G++
Sbjct: 106 YSEYDGKTPNALAHGYTKNGKLVRWKIKLLNKKVMWSVGDTQDNDPYNFMAAKAIGGKT- 164
Query: 296 IIIVEGEMDKLSM-------------EEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 342
+ I EGE D +++ E+ F +S+ DG+ S + +EE +++
Sbjct: 165 LFITEGEEDCIALRQILKTMNRGSAYEDLDFA-VISLSDGSSSVHKCLSRVAEEIKQRWE 223
Query: 343 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV---DHFKD 399
++++ D D PG+ A+E R + + ND K
Sbjct: 224 -------------QVVIVFDDDEPGRKAAKEACRLLPGAMIATLPANDANDCLKRGLLKA 270
Query: 400 ANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALN 459
+++ L + N EL + DE+ E G+ W L
Sbjct: 271 TQSAVVFRAARPLPTALVNKELL-------MEELDDEV----------EQGVDYPWPKLT 313
Query: 460 EL-YNVLPGELTIVTGVPNSGKSEWIDALI-CNINEHAGWKFVLCSMENKVREHARKLLE 517
+L + E+ + G GK+ ++ NI +H W ME E R++
Sbjct: 314 DLMFGQRRAEVITIGGAEGGGKTTLSRQIVHHNITKH-DWGVFTAYMEETPTETLRRMAG 372
Query: 518 KHIKKPFFEANYGGSAERMTVEEFEQGKA-WLSNTFSLIRCENDSLPSIKWVLDLAKAAV 576
+ P++E + R +F Q A L N R + P W D K +
Sbjct: 373 LNDNLPYWEPAFTREDPRYDEAKFRQTAAKMLRNMEIWDRKQAGEDPYETW--DGLKTIL 430
Query: 577 LRHG--VRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 629
+ G + V+D L S+ + +++ ++ + + A + HV ++H
Sbjct: 431 RQIGPDIDMFVLDNLTYLSEGISASE-KNDFLGKLYADITKLADQYQFHVNILSH 484
>gi|50085518|ref|YP_047028.1| replicative DNA helicase;chromosome replication, chain elongation
[Acinetobacter sp. ADP1]
gi|49531494|emb|CAG69206.1| replicative DNA helicase;chromosome replication, chain elongation
[Acinetobacter sp. ADP1]
Length = 481
Score = 42.7 bits (99), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 108/265 (40%), Gaps = 22/265 (8%)
Query: 443 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G+ G++TG+ L N+ Y + G++ IV P+ GK+ + L+ ++ + ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTYGMQSGDMIIVAARPSMGKTTFAMNLVESVLFNCNLPALV 264
Query: 502 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE--- 558
SME A +L+ ++YG + G W T ++++ +
Sbjct: 265 FSMEMPADSIAMRLI----------SSYGKVHQGHLRSGKLDGDEWSKVTGTILQLQEKH 314
Query: 559 -----NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 613
+ +LP + + A G G ++ Y +L + + ++ +
Sbjct: 315 LYIDDSSALPPTELRARARRIAKQHGGKLGCIMIDYLQLMKVPGMGDNRVGEIGEISRSL 374
Query: 614 KRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEA 670
K A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 375 KALAKEMDCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKES 434
Query: 671 GPIDRVQVCVRKVRNKVVGTIGEAF 695
++ + K RN +GT+ AF
Sbjct: 435 KEAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|381210661|ref|ZP_09917732.1| replicative DNA helicase [Lentibacillus sp. Grbi]
Length = 457
Score = 42.7 bits (99), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 120/284 (42%), Gaps = 29/284 (10%)
Query: 432 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICN 490
D +D I+ +H GD GI TG+R L+++ + +L I+ P+ GK+ + + N
Sbjct: 168 DVYDNIEQLHHH-DGDVTGIPTGYRDLDQITSGFQRNDLIIIAARPSVGKTAFALNIAQN 226
Query: 491 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 550
++ + + S+E + ++L E N A+R+ E E W
Sbjct: 227 VSINTDENVAIFSLEMGADQLVSRML-------CAEGNI--DAQRLRTGELEPDD-WSKL 276
Query: 551 TFSLIRCEN-----DSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNEL----DHQRPVS 599
T ++ N D P ++ +K L+ HG+ G+++ Y +L + R
Sbjct: 277 TMAMGSLSNAGIYIDDSPGVRVSEIRSKCRRLKQEHGL-GMILIDYLQLIQGSGNSRENR 335
Query: 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNG 659
Q E +S+ L + R + + + R + + P + D+ S D
Sbjct: 336 QQEVSEISRALKALAR--ELNVPLIALSQLSRGVEARQDKRPMMSDLRESGSIEQDADIV 393
Query: 660 IVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL-SYNR 700
++R+ D E+ + +++ + K RN VG + AF+ YN+
Sbjct: 394 GFLYRDDYYDQESEKQNIIEIIISKQRNGPVGNVELAFVKEYNK 437
>gi|326633057|ref|YP_004306668.1| predicted DNA helicase [Salmonella phage Vi06]
gi|301170530|emb|CBV65215.1| predicted DNA helicase [Salmonella phage Vi06]
Length = 305
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 103/268 (38%), Gaps = 30/268 (11%)
Query: 258 RNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 316
+NG +V+ K RD +K F + +G G I++ EGE+D L++ E
Sbjct: 51 QNGTIVSQKIRDKDKNFKTTGSHKSDALFGKHLWSGGKKIVVTEGEVDMLTVMELQDCKY 110
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 111 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDEAGRKAVEEAAQ 158
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY---PIMGLFNFRDY 433
+ + P KDANE + + V NA + ++ + R+
Sbjct: 159 VLPAGKVRVAVLP-------CKDANECHLNGHDREVMAQVWNAGPWIPDGVVSALSLRER 211
Query: 434 FDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNI 491
E H +S + G+ +G +N+ GE+ +VT GKS ++
Sbjct: 212 IRE-----HLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 266
Query: 492 NEHAGWKFVLCSMENKVREHARKLLEKH 519
G K L +E V E ++ H
Sbjct: 267 GTVMGKKVGLAMLEESVEETVEDIIGLH 294
>gi|424864447|ref|ZP_18288350.1| replicative DNA helicase [SAR86 cluster bacterium SAR86B]
gi|400759193|gb|EJP73375.1| replicative DNA helicase [SAR86 cluster bacterium SAR86B]
Length = 455
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 118/274 (43%), Gaps = 40/274 (14%)
Query: 449 FGISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNI--NEHAGWKFVLCSME 505
G STG++ L++ L + G+L +V G P+ GK+ + + N+ +E + ++ S+E
Sbjct: 186 IGSSTGFKDLDKKLQGLQKGDLVVVAGRPSMGKTSFAMNIAENVLLDEESKGAVLIFSLE 245
Query: 506 NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA------WLSNTFSLIRCEN 559
++L K G ++ E +G+ W+ ++
Sbjct: 246 MPGESLTTRMLSGMSKLDQQNVRSGMLKDQELRELLSEGEKLKNMPLWIDDS-------- 297
Query: 560 DSLPSIKWVLDL-AKAAVLR--HGVRGLVIDPYNELDHQRPVS-QTETEYVSQMLTMVKR 615
SI ++L AKA L+ G L++ Y +L Q P+S + +S++ +K
Sbjct: 298 ----SILSPMELRAKARRLKRQEGELSLIVVDYLQL-MQLPLSVENRVNQISEISRSLKS 352
Query: 616 FAQHHACHVWFVAHPRQLHNWVGEPPN----LYDISGSAHFINKCDNGIVIHR----NRD 667
A+ V ++ QL+ V + PN + D+ S D + I+R N D
Sbjct: 353 LAKELDVPVIALS---QLNRAVEQRPNKRPIMADLRDSGAIEQDADVILFIYRDEVYNED 409
Query: 668 PEAGPIDRVQVCVRKVRNKVVGTIGEAFL-SYNR 700
E G ++ ++ + K RN +GT+ FL Y R
Sbjct: 410 SEQG--NKAEIIIGKQRNGPIGTVNLTFLKEYTR 441
>gi|262279565|ref|ZP_06057350.1| replicative DNA helicase;chromosome replication [Acinetobacter
calcoaceticus RUH2202]
gi|262259916|gb|EEY78649.1| replicative DNA helicase;chromosome replication [Acinetobacter
calcoaceticus RUH2202]
Length = 481
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 51/264 (19%), Positives = 112/264 (42%), Gaps = 20/264 (7%)
Query: 443 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G+ G++TG+ L N+ + G+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTSGMQAGDLIIVAARPSMGKTTFAMNLVESVLQYNKLPALV 264
Query: 502 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
SME A +L+ + H++ +A+ T+ + +Q ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQQMHLYIDDS--- 320
Query: 555 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTELRARARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 615 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 671
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMHCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 672 PIDRVQVCVRKVRNKVVGTIGEAF 695
++ + K RN +G++ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGSVRLAF 459
>gi|329769508|ref|ZP_08260918.1| replicative DNA helicase [Gemella sanguinis M325]
gi|328838723|gb|EGF88321.1| replicative DNA helicase [Gemella sanguinis M325]
Length = 453
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 122/303 (40%), Gaps = 44/303 (14%)
Query: 429 NFRDYFDEI-DAYYHRTSGD--EFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWID 485
N +D +E+ R SG+ I TG+ L++L + G+L I+ P+ GK+ +
Sbjct: 156 NMKDVTNEVFQEIVARMSGEGQNIAIPTGFSTLDQLVGLGKGDLVILAARPSMGKTAFAL 215
Query: 486 ALICNI------NEHAGWKFVLCSMENKVREHARKLL-------EKHIKKPFFEANYGGS 532
+ N+ +E L S+E + +++ + IKK G+
Sbjct: 216 NIALNVAGKNHRDESEKKTVALFSLEMGADQLVSRMICSEGMLDSEKIKK--------GT 267
Query: 533 AERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYN 590
+ + + E +L+ I E+ + + V AK +L+ HG+ +VID
Sbjct: 268 LDNDDMMKLETAVHFLNQKNIFI--EDSAFIKVNEV--KAKCKLLKNEHGLDLIVIDYLQ 323
Query: 591 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGS 649
L + + E VS++ +K+ A+ C V ++ R + + + P + D+ S
Sbjct: 324 LLQGSKRTDNRQQE-VSEISRSLKQMARELECPVIALSQLSRSVESRHDKRPMMSDLRES 382
Query: 650 AHFINKCDNGIVIHR-----------NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS- 697
D ++R N E + V+V V K RN GT AF+
Sbjct: 383 GSIEQDADIVSFLYRSDYYRSENADENEVQEPSDVSTVEVIVAKNRNGQTGTAELAFMKR 442
Query: 698 YNR 700
YNR
Sbjct: 443 YNR 445
>gi|326923873|ref|XP_003208157.1| PREDICTED: twinkle protein, mitochondrial-like, partial [Meleagris
gallopavo]
Length = 441
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 115/278 (41%), Gaps = 45/278 (16%)
Query: 223 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW-------RNGKLVNCKYR----DFN 271
+A F ++ TL+R V R +V FP++ R KL+ + + +
Sbjct: 87 KAAFGITPLANSTLKRFGVRYLRAAKALV--FPWFAPRDAALRGLKLLVAEQQGEAVSYT 144
Query: 272 KKFWQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 330
++ + D + +GL I ++++++ E+D L++ +A + C+++P GA + +
Sbjct: 145 EETFPRFDAYRNLFGLPLIGRRDTEVVLTGRELDALALHQATGVPCLALPRGA-TILPPA 203
Query: 331 NVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK 390
+P YL+Q R+ L D A+ AR++ +RC V+ P
Sbjct: 204 LLP----------------YLEQFRRVTLWLGDDLRSWEAAKLFARKLNPKRCSLVQ-PG 246
Query: 391 KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 450
+ N L L +++ A + +FR DE+ + + E
Sbjct: 247 DLQPRPLEALNRGL------NLTKILRAALPAGHKAIVSFRQLRDEV---FGELANSEQV 297
Query: 451 ISTGWRALNELYNVLP----GELTIVTGVPNSGKSEWI 484
W EL +L GELT+ TG SGK+ +I
Sbjct: 298 AGVKWARFPELNKLLKGHRRGELTVFTGPTGSGKTTFI 335
>gi|356668244|gb|AET35349.1| DNA primase/helicase protein [uncultured virus]
gi|356668246|gb|AET35350.1| DNA primase/helicase protein [uncultured virus]
Length = 234
Score = 42.4 bits (98), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 93/236 (39%), Gaps = 44/236 (18%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTAVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLLEKHI-KKPFFEANYGGSAERMTVEEFEQ 543
N G K + +E VR A+ L+ K+P N +T EEF +
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLMSVEAGKRPHINRNA------LTPEEFRE 212
>gi|356668272|gb|AET35363.1| DNA primase/helicase protein [uncultured virus]
Length = 233
Score = 42.4 bits (98), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 85/214 (39%), Gaps = 37/214 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFGKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 522
N G K + +E VR A+ L+ +K
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLMSIEARK 196
>gi|255304948|ref|NP_001157285.1| twinkle protein, mitochondrial isoform C [Homo sapiens]
Length = 230
Score = 42.4 bits (98), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 564 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623
SI+ V+D + AV + + ++ID + +S ++ + ++FA + CH
Sbjct: 39 SIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIGVFRKFATDNNCH 98
Query: 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRK 682
V V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 99 VTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS--- 152
Query: 683 VRNKVVGTIGEAFLSYNR 700
+N+ G +G L +N+
Sbjct: 153 -KNRFDGDVGVFPLEFNK 169
>gi|297618091|ref|YP_003703250.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
gi|297145928|gb|ADI02685.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
Length = 692
Score = 42.4 bits (98), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 73/188 (38%), Gaps = 19/188 (10%)
Query: 209 TEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHG----HEVVIAFPYWRNGKLVN 264
+E + L P ++ Y A R I+ E L R R G E I P+ NG++V
Sbjct: 146 SEAAKMLSPDLEIVQEYLAARGINYELLTRYRWGYVPEGFVPGQEECIVVPFIVNGQVVG 205
Query: 265 CKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPD-GA 323
+ R + + K + V + L +EG +IVEGE D L +A + VP
Sbjct: 206 IRGRARDGRKGGAKGSRFVLWNLGALEGHDQAVIVEGESDALRTIQALESCGIDVPVLSV 265
Query: 324 PSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERC 383
P + ++ E Q YL + QA DP + +G RC
Sbjct: 266 PGATFRREWEREFQGIHTVYL------IPQAD--------DPSWNNFVANAVKVLGDYRC 311
Query: 384 WRVRWPKK 391
V+ P K
Sbjct: 312 VVVKLPWK 319
>gi|401406728|ref|XP_003882813.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool]
gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool]
Length = 2215
Score = 42.4 bits (98), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 23/165 (13%)
Query: 229 RLISAET--LRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQE---KDTEKV 283
R +SA T LR Q + A P +V K R +K +
Sbjct: 339 RPVSARTRLLRSRGASQISSERDGSGAEPSAPTASIVRVKARSITEKSCMRLLPAGGQWG 398
Query: 284 FYGLDDIEGESDIIIV-EGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 342
+G + E+D ++V EGE D +S+ + L VSVP GA S+ + +P
Sbjct: 399 LFGAGTVPAEADTVVVTEGEFDAMSVFQQTGLPAVSVPMGA-HSLPVQVLP--------- 448
Query: 343 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 387
+ ++ +IIL D D G+ AE A ++G RC+ VR
Sbjct: 449 -------FFERFKKIILWMDEDAAGREGAELFASKLGIGRCYLVR 486
>gi|365155945|ref|ZP_09352287.1| replicative DNA helicase [Bacillus smithii 7_3_47FAA]
gi|363627870|gb|EHL78714.1| replicative DNA helicase [Bacillus smithii 7_3_47FAA]
Length = 454
Score = 42.4 bits (98), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 130/326 (39%), Gaps = 31/326 (9%)
Query: 388 WPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDY----FDEIDAYYHR 443
+ +++DVD + E K ++E A+ G N +D +D I+ ++R
Sbjct: 130 YTREDDVDDLLNDAE----------KRIMEVAQRKNTSGFHNIKDVLVRTYDNIEMLHNR 179
Query: 444 TSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC 502
GD GI TG+ L+ + +L IV P+ GK+ + + N+ +
Sbjct: 180 -KGDVTGIPTGFAELDRMTAGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTDENVAIF 238
Query: 503 SMENKVREHARKLL--EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEND 560
S+E + ++L E +I G+ + LSN I D
Sbjct: 239 SLEMGAEQLVMRMLCAEGNINAQNLRT---GTLTEEDWRKLTMAMGSLSNAGIFI----D 291
Query: 561 SLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQ 618
P I+ AK L+ HG+ +VID + + + VS++ +K A+
Sbjct: 292 DTPGIRINEIRAKCRRLKQEHGLGMIVIDYLQLIQGSGRSGENRQQEVSEISRSLKALAR 351
Query: 619 HHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDR 675
V ++ R + + P + DI S D ++R+ D E+ +
Sbjct: 352 ELEVPVIALSQLSRGVEQRQDKRPMMSDIRESGAIEQDADIVAFLYRDDYYDKESENKNI 411
Query: 676 VQVCVRKVRNKVVGTIGEAFL-SYNR 700
+++ + K RN VGT+ AF+ YN+
Sbjct: 412 IEIIIAKQRNGPVGTVQLAFIKEYNK 437
>gi|356668210|gb|AET35332.1| DNA primase/helicase protein [uncultured virus]
Length = 247
Score = 42.4 bits (98), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKVTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|302334834|ref|YP_003800041.1| primary replicative DNA helicase [Olsenella uli DSM 7084]
gi|301318674|gb|ADK67161.1| primary replicative DNA helicase [Olsenella uli DSM 7084]
Length = 464
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 113/282 (40%), Gaps = 29/282 (10%)
Query: 404 LMYLGPGALKEVVENAELYPIMGLFN------FRDYFDEIDAYYHRTS------GDEFGI 451
L + P KEVV++AE ++G+ N + D + + Y + G+
Sbjct: 140 LAFDAPEDTKEVVDSAENL-LLGVTNREIGDSYSDLSEVMGDLYTELGEACMDPAEFMGV 198
Query: 452 STGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 510
TG+ ++ L + PG++ +V P GK+ + L N H G S+E E
Sbjct: 199 QTGYPGIDSRLQGLRPGQMIVVGARPGVGKTSFALNLATNAAAH-GASVAFFSLEMSKVE 257
Query: 511 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE--NDSLPSIKWV 568
A++LL + P SA R + Q L T L R + D P
Sbjct: 258 IAQRLLSAYAHIPL-------SAIRGARIQDNQWPTILDATRDLSRLDIMIDDTPGTTVT 310
Query: 569 LDLAKAAVLRHGV-RGLVIDPYNEL---DHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624
AKA + +G RG+V+ Y +L R + VS+M +K A+ V
Sbjct: 311 EIRAKARRMLNGKERGIVLVDYLQLLSPPSGRQRMDSRATEVSEMSRGIKIMAKDLEVPV 370
Query: 625 WFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665
++ RQ+ + G+ P L D+ S D I++ R+
Sbjct: 371 VALSQLNRQVTDRKGQRPQLSDLRESGSIEQDADIVILLDRS 412
>gi|194386050|dbj|BAG59589.1| unnamed protein product [Homo sapiens]
Length = 230
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 564 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623
SI+ V+D + AV + + ++ID + +S ++ + ++FA + CH
Sbjct: 39 SIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIGVFRKFATDNNCH 98
Query: 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRK 682
V V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 99 VTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS--- 152
Query: 683 VRNKVVGTIGEAFLSYNR 700
+N+ G +G L +N+
Sbjct: 153 -KNRFDGDVGVFPLEFNK 169
>gi|262369753|ref|ZP_06063081.1| replicative DNA helicase;chromosome replication [Acinetobacter
johnsonii SH046]
gi|381196517|ref|ZP_09903859.1| replicative DNA helicase [Acinetobacter lwoffii WJ10621]
gi|262315821|gb|EEY96860.1| replicative DNA helicase;chromosome replication [Acinetobacter
johnsonii SH046]
Length = 481
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 119/300 (39%), Gaps = 37/300 (12%)
Query: 408 GPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLP 466
GP A+ VV D FD+++ + G G++TG+ L N+ +
Sbjct: 185 GPKAINTVVA--------------DVFDKLNEL-SQMEGSITGLTTGFLELDNKTSGMQA 229
Query: 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 526
G+L IV P+ GK+ + L+ ++ + ++ SME A +L+
Sbjct: 230 GDLIIVAARPSMGKTTFAMNLVESVLFNNDLPALVYSMEMPADSIAMRLI---------- 279
Query: 527 ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE--------NDSLPSIKWVLDLAKAAVLR 578
++YG + G W T ++++ + + +LP + + A
Sbjct: 280 SSYGKVHQGHLRSGKLDGDEWSKVTGTILQLQEKKLYIDDSSALPPTEVRARARRIAKQH 339
Query: 579 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWV 637
G G ++ Y +L + +S++ +K A+ C V ++ R L N
Sbjct: 340 DGKLGCIMVDYLQLMKVPGMGDNRVGEISEISRSLKALAKEMMCPVIALSQLNRSLENRP 399
Query: 638 GEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+ P + D+ S D + I+R+ + E+ ++ + K RN +GT+ AF
Sbjct: 400 NKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESKEAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|356668206|gb|AET35330.1| DNA primase/helicase protein [uncultured virus]
Length = 232
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P FKD NE L+ P + + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------FKDPNECLLAGQPDTIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|183980111|ref|YP_001848402.1| replicative DNA helicase DnaB [Mycobacterium marinum M]
gi|443488574|ref|YP_007366721.1| replicative DNA helicase DnaB [Mycobacterium liflandii 128FXT]
gi|183173437|gb|ACC38547.1| replicative DNA helicase DnaB [Mycobacterium marinum M]
gi|442581071|gb|AGC60214.1| replicative DNA helicase DnaB [Mycobacterium liflandii 128FXT]
Length = 460
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 108/274 (39%), Gaps = 18/274 (6%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-IDAL-ICN 490
DEIDA G G+ TG+ L+E+ N L PG++ IV P GKS +D + C+
Sbjct: 188 MDEIDAIAS-NGGISRGVPTGFTELDEVTNGLHPGQMIIVAARPGVGKSTLGLDFMRSCS 246
Query: 491 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 550
I V+ S+E E +LL K + G RMT +++ + +S
Sbjct: 247 IKHQ--MASVIFSLEMSKTEIVMRLLSAEAKIKLADMRSG----RMTDDDWTRLARRMSE 300
Query: 551 TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR-GLVIDPYNELDHQRPVSQTETEYVSQM 609
+DS P++ + AKA LR LV+ Y +L ++ VS+
Sbjct: 301 ISEAPLYIDDS-PNLTMMEIRAKARRLRQKANLKLVVVDYLQLMTSGKKHESRQVEVSEF 359
Query: 610 LTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR---- 664
+K A+ V ++ R + P L D+ S D I+++R
Sbjct: 360 SRHLKLLAKEIEVPVVAISQLNRGPEQRTDKKPMLSDLRESGSLEQDADMVILLNRPDAF 419
Query: 665 -NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 697
DP G D + R K V + LS
Sbjct: 420 ERDDPRGGEADFILAKHRNGPTKTVTVAHQLHLS 453
>gi|356668224|gb|AET35339.1| DNA primase/helicase protein [uncultured virus]
Length = 244
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|312372649|gb|EFR20570.1| hypothetical protein AND_19883 [Anopheles darlingi]
Length = 359
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 104/257 (40%), Gaps = 24/257 (9%)
Query: 455 WRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 510
WR L +L G ELT++TG GK+ ++ ++ + G + S E +
Sbjct: 92 WRRYPTLNKLLKGHRKGELTVLTGPTGCGKTTFMSDYSLDLAQQ-GVSTLWGSFEIRNTR 150
Query: 511 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLD 570
A LL + + +P E + ER +EFE+ L F + IK V++
Sbjct: 151 LAATLLRQMVGQPLDE--HLVDFERW-ADEFER----LPIYFMTFHGQQ----PIKVVME 199
Query: 571 LAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFVA 628
+ A H ++ ++ID + S+ Y Q ++ + FA CHV V
Sbjct: 200 AIEHAQYVHDIQHVIIDNLQFMMGMLEESKHLDRYWKQDAIIGAFRSFATRRNCHVTLVI 259
Query: 629 HPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVV 688
HPR+ + + I G A + DN ++I R +Q+ +N+
Sbjct: 260 HPRKERD--TDELTTSSIFGGAKASQEADNVLLIQDKRLTSVRGKKYLQIA----KNRYS 313
Query: 689 GTIGEAFLSYNRVTGEY 705
G +G L +++ + Y
Sbjct: 314 GDLGIMPLEFDKASLSY 330
>gi|389706243|ref|ZP_10186333.1| replicative DNA helicase [Acinetobacter sp. HA]
gi|388610720|gb|EIM39835.1| replicative DNA helicase [Acinetobacter sp. HA]
Length = 479
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 121/301 (40%), Gaps = 39/301 (12%)
Query: 408 GPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLP 466
GP A+ VV D FD+++ + G G++TG+ L N+ +
Sbjct: 183 GPKAINTVVA--------------DVFDKLNEL-SQMEGSITGLTTGFVELDNKTSGMQS 227
Query: 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 526
G+L IV P+ GK+ + L+ ++ + ++ SME A +L+ F
Sbjct: 228 GDLIIVAARPSMGKTTFAMNLVESVLFNNNLPALVYSMEMPADSIAMRLISS-----FGR 282
Query: 527 ANYGG-SAERMTVEEFEQGKAWLSNTFSLIRCE--------NDSLPSIKWVLDLAKAAVL 577
+ G A +M +E W T +++ + + +LP + + A +
Sbjct: 283 VHQGHLRAGKMDSDE------WSKVTSTIVHLQEKNLYIDDSSALPPTEVRARARRIAKM 336
Query: 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNW 636
G G ++ Y +L + +S++ +K A+ C V ++ R L N
Sbjct: 337 HGGKLGCIMVDYLQLMKVPGMGDNRVGEISEISRSLKALAKEMQCPVIALSQLNRSLENR 396
Query: 637 VGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEA 694
+ P + D+ S D + I+R+ + E+ ++ + K RN +GT+ A
Sbjct: 397 PNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESKEAGTAEIIIGKQRNGPIGTVRLA 456
Query: 695 F 695
F
Sbjct: 457 F 457
>gi|451822510|ref|YP_007458711.1| replicative DNA helicase DnaC [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451788489|gb|AGF59457.1| replicative DNA helicase DnaC [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 436
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 118/274 (43%), Gaps = 28/274 (10%)
Query: 436 EIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEH 494
EI+ Y T G+ G+ TG+ ++ N L GEL ++ G P++GK+ + NI +
Sbjct: 163 EIEKRYQ-TGGEIPGMQTGFIDFDKATNGLKKGELFVIGGRPSTGKT----LIALNIADG 217
Query: 495 AG---WKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT 551
G +K ++ +E + L + + G +++ +EFE+ L+ T
Sbjct: 218 LGINKYKVLIVELEMTPESLGMRRLAYNSNIQAQKLQTG----KLSSQEFEK----LALT 269
Query: 552 FSLIRCEND------SLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 605
F+ + N+ S +I + AKA HG+ L+ID +D P +
Sbjct: 270 FNSLSQRNNIFTDCSSYQNILTIKSKAKAVKQIHGLDVLIIDHLTLMDI--PSKGNRSAE 327
Query: 606 VSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664
+ ++ +K A+ ++ + R + + P + D+ S + D + +R
Sbjct: 328 IGEVTRQLKLLAKELDINIILLCQLSRAVEQRTDKRPIMSDLRESGNIEQDADLVMFAYR 387
Query: 665 NR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 696
+ +PE + ++ + K RN VGT+ +L
Sbjct: 388 DEYYNPETEDKNIMEWIIAKQRNGRVGTLKFGYL 421
>gi|406830803|ref|ZP_11090397.1| replicative DNA helicase [Schlesneria paludicola DSM 18645]
Length = 454
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 126/314 (40%), Gaps = 46/314 (14%)
Query: 406 YLGPGALKEVVENAELYPIMGLFNFRDYFDEI--DAYYHRT----------SGDEFGIST 453
Y G E+++ AE I G+F ++ +I D H T G+ G+ST
Sbjct: 133 YDGSDDTAEMLKRAE-QGIFGIFESQETSSKISMDDIMHETLDRINTRLGREGNISGLST 191
Query: 454 GWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINE---HAG-WKFVLCSMENKV 508
G+ L++ N P EL IV P+ GK+ A +CNI E AG ++ S+E
Sbjct: 192 GFNDLDKQTNGFQPAELVIVAARPSMGKT----AFVCNIAEWVAGAGETATIIFSLEQSK 247
Query: 509 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE---NDSLPSI 565
E A + L A G R + E ++ A L + L R + +DS
Sbjct: 248 LELAERFL-------CIRAKLDGHRLRKGLLEPDERHALLEASSELSRLQLFIDDSPGRT 300
Query: 566 KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 625
+ + R GLVI Y +L + ++Q+ +K A+ + +
Sbjct: 301 VAQISAICRRLKRRNNLGLVIIDYLQLIEPEDKRINREQQIAQITRRLKGIAKENGLPLI 360
Query: 626 FVAHPRQLHNWV----GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA-GPIDR---VQ 677
++ QL+ V + P L D+ S D + +HR P+A P DR +
Sbjct: 361 ALS---QLNRGVELREDKRPKLADLRESGAIEQDADIIMFLHR---PDAYNPEDRPGLAE 414
Query: 678 VCVRKVRNKVVGTI 691
+ V K R+ G +
Sbjct: 415 IVVAKHRSGPTGIV 428
>gi|385236856|ref|YP_005798195.1| hypothetical protein ABTW07_1305 [Acinetobacter baumannii
TCDC-AB0715]
gi|387124694|ref|YP_006290576.1| replicative DNA helicase [Acinetobacter baumannii MDR-TJ]
gi|417579163|ref|ZP_12229996.1| replicative DNA helicase [Acinetobacter baumannii Naval-17]
gi|417878519|ref|ZP_12523130.1| replicative DNA helicase [Acinetobacter baumannii ABNIH3]
gi|421628300|ref|ZP_16069084.1| replicative DNA helicase [Acinetobacter baumannii OIFC180]
gi|323517353|gb|ADX91734.1| hypothetical protein ABTW07_1305 [Acinetobacter baumannii
TCDC-AB0715]
gi|342232632|gb|EGT97405.1| replicative DNA helicase [Acinetobacter baumannii ABNIH3]
gi|385879186|gb|AFI96281.1| replicative DNA helicase [Acinetobacter baumannii MDR-TJ]
gi|395568301|gb|EJG28975.1| replicative DNA helicase [Acinetobacter baumannii Naval-17]
gi|408707865|gb|EKL53145.1| replicative DNA helicase [Acinetobacter baumannii OIFC180]
Length = 470
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 116/277 (41%), Gaps = 34/277 (12%)
Query: 450 GISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508
G++TG+ AL+ + + G+L ++ P+ GK+ + L NI + ++ S+E K
Sbjct: 194 GVNTGFVALDHRIGEINNGDLVVIAARPSMGKTAFALNLATNIATNLRKPVLIESIEMK- 252
Query: 509 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFE-QGKAWLSNTFSLIRCEN------DS 561
R + K I G + ++ E G+ W T + +N D
Sbjct: 253 ----RDAITKRIISSV------GDLKLSKIKNAELDGEDWTCFTEAAKVIQNSPLMIMDG 302
Query: 562 LPSIKWVLDLAKAAVLRHGVRGLVIDPYNE--LDHQRPVSQTETEYVSQMLTMVKRFAQH 619
+I + A+ G G + Y + + P S +E + ++ + +KR A
Sbjct: 303 AVTISDIRKHARKVRSEEGSLGAIFVDYLQKIITPHLPASASENDRLTYISDSLKRVAME 362
Query: 620 HACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPID 674
C V+ ++ RQL N + P + D+ GS D + ++R N + P
Sbjct: 363 FNCPVFALSQLSRQLENRSDKRPIMSDLRGSGAIEQDADVILFLYRDEYYNGEKSKTP-G 421
Query: 675 RVQVCVRKVRNKVVGTIGEAF----LSYNRVTGEYMD 707
++V KVR+ G++G+ F L Y+R + + D
Sbjct: 422 LLEVNAAKVRD---GSVGKTFLCSELDYSRFSNVHSD 455
>gi|433462817|ref|ZP_20420388.1| DNA primase [Halobacillus sp. BAB-2008]
gi|432188273|gb|ELK45477.1| DNA primase [Halobacillus sp. BAB-2008]
Length = 604
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 78/199 (39%), Gaps = 41/199 (20%)
Query: 252 IAFPYWRN--GKLVNCKYRDFNK---KFWQEKDTE-----KVFYGLDD----IEGESDII 297
+ FP RN GK V R K K+ +TE ++ Y D I E +I
Sbjct: 205 VIFP-LRNHLGKTVAFAGRSLGKQEPKYLNSPETELFHKGRLLYNFDQARASIRKEKSVI 263
Query: 298 IVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRI 357
+ EG D +S ++AG N V+ A SS + K +I
Sbjct: 264 LFEGFGDVISADQAGVHNGVATMGTAISSA------------------QANLLKKYVDQI 305
Query: 358 ILATDGDPPGQALAEELARRVGRERC--WRVRWPKKNDVDHFKDANEVLMYLGPGALKEV 415
I+ DGD PG A + A+ V C + R P D D F + + G KEV
Sbjct: 306 IVCYDGDKPGIEAAVKAAKLVKSVGCQTYVARVPDGLDPDDF-----IQKHGGERFRKEV 360
Query: 416 VENAELY-PIMGLFNFRDY 433
++ +E Y M + RDY
Sbjct: 361 LDTSETYISFMMSYLRRDY 379
>gi|356668214|gb|AET35334.1| DNA primase/helicase protein [uncultured virus]
Length = 230
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTLKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668258|gb|AET35356.1| DNA primase/helicase protein [uncultured virus]
Length = 247
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668202|gb|AET35328.1| DNA primase/helicase protein [uncultured virus]
Length = 239
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|269926920|ref|YP_003323543.1| replicative DNA helicase [Thermobaculum terrenum ATCC BAA-798]
gi|269790580|gb|ACZ42721.1| replicative DNA helicase [Thermobaculum terrenum ATCC BAA-798]
Length = 446
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 122/308 (39%), Gaps = 26/308 (8%)
Query: 393 DVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFN-FRDYFDEIDAYYHRTSGDEFGI 451
+VD D E ++Y V +N + L + ++FD++D Y H+ G+ GI
Sbjct: 134 EVDEALDRAEQILY-------RVAQNRSTKDFISLRDALAEFFDKLD-YQHQHRGEIVGI 185
Query: 452 STGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 510
TG+R L++L L +L IV P+ GK+ + + N + S+E +
Sbjct: 186 PTGFRDLDQLTGGLQRSDLVIVAARPSVGKTAFAMCMAANAAIKHNVPVGIFSLEMSAEQ 245
Query: 511 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL----IRCENDSLPSIK 566
+LL E RM + ++ + L I ++ S S +
Sbjct: 246 LVLRLLA-------METGIDSHRLRMGFLDDDEWDKLIRAIGRLSEVPIFIDDTSAASSQ 298
Query: 567 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 626
+ A+ + GV+ +VID + R + + +S++ +K A+ V
Sbjct: 299 ELRSKARRLHAQKGVQMIVIDYLQLMQSGR--TDNRVQEISEISRGLKGLARELNIPVVA 356
Query: 627 VAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKV 683
++ R + P L D+ S D + I+R +PE + ++ V K
Sbjct: 357 LSQLSRAVEQRQDHRPQLSDLRESGSIEQDADVVMFIYREEIYNPETDKKNIAEIHVAKH 416
Query: 684 RNKVVGTI 691
RN VG +
Sbjct: 417 RNGPVGIV 424
>gi|254251743|ref|ZP_04945061.1| hypothetical protein BDAG_00940 [Burkholderia dolosa AUO158]
gi|124894352|gb|EAY68232.1| hypothetical protein BDAG_00940 [Burkholderia dolosa AUO158]
Length = 320
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 31/243 (12%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINE 493
D + +H G+ T W + + PGE+T+ GV GKS + ++ +
Sbjct: 32 LDAVIQMFHGEEEQSIGMPTPWSKVGDRLKFRPGEVTLWAGVNGHGKSGALGYVMLH-GM 90
Query: 494 HAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFS 553
AG + + S E R+ ++ + GG+ T++ + W +
Sbjct: 91 AAGARSCIASFEMAPRQIMHRMCRQ---------AAGGAVP--TIDAISKFHRWTDDRLW 139
Query: 554 LIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLT 611
L + P AV R+ + L +D + +D +Y Q +
Sbjct: 140 LYAQNGKATPD-------RMIAVSRYCRKELNVD-HMVIDSLMKCGLAPDDYTGQKNFVD 191
Query: 612 MVKRFAQHHACHVWFVAHPRQLHNWVGEP----PNLYDISGSAHFINKCDNGIVIHRNRD 667
+ A+ H+ V H R+ GE P+ +DI G+ + DN ++++RN+
Sbjct: 192 SLCVLARDTGLHIHLVHHVRK-----GEKESAVPDKFDIKGAGEITDLVDNVLIVYRNKR 246
Query: 668 PEA 670
E+
Sbjct: 247 KES 249
>gi|356668208|gb|AET35331.1| DNA primase/helicase protein [uncultured virus]
Length = 246
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|283768423|ref|ZP_06341335.1| replicative DNA helicase [Bulleidia extructa W1219]
gi|283104815|gb|EFC06187.1| replicative DNA helicase [Bulleidia extructa W1219]
Length = 454
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 68/322 (21%), Positives = 126/322 (39%), Gaps = 40/322 (12%)
Query: 406 YLGPGALKEVVENAELYPIM--------GLFNFRDYFDEIDAYYHRTS---GDEFGISTG 454
Y G L E + AE Y + G + DE+ R + D G T
Sbjct: 125 YEGVSDLGEYLSEAEEYILRIARSREAGGFKDMIQTMDELKNELKRNAELKTDVTGYKTA 184
Query: 455 WRALNEL-YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHAR 513
+ L+ + + + G+L +V P GK+ + ++ N+ H V+ S+E + R
Sbjct: 185 YADLDRITHGLQKGDLIVVAARPAMGKTAFALNVLKNVANHNDGAVVMFSLEMGNVDLGR 244
Query: 514 KLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN----DSLPSIKWVL 569
++L + ++N S + +E+ L + + +N D P+ K V
Sbjct: 245 RILS---AESGIQSNKLKSPRNLNNDEWN----LLYEVMNDFKMKNKIFIDDAPNRK-VR 296
Query: 570 DL---AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 626
D+ + +HG+ +V+D L R + + VS++ +K A+ V
Sbjct: 297 DMYQKCREIKKQHGLSLVVVDYIQLLSTDRRQGENRQQEVSEISRALKGLARELEVPVMA 356
Query: 627 VAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN------------RDPEAGPI 673
++ R++ + P L D+ S D ++++R R E G
Sbjct: 357 LSQLSREVEKRENKRPMLADLRESGAIEQDADIVMMLYRQAYYDRAGEGAEKRPEEDGKA 416
Query: 674 DRVQVCVRKVRNKVVGTIGEAF 695
D ++V + K RN GT+ AF
Sbjct: 417 DELEVIIAKHRNGETGTVKLAF 438
>gi|356668250|gb|AET35352.1| DNA primase/helicase protein [uncultured virus]
Length = 229
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668260|gb|AET35357.1| DNA primase/helicase protein [uncultured virus]
Length = 247
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668222|gb|AET35338.1| DNA primase/helicase protein [uncultured virus]
Length = 246
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|366162135|ref|ZP_09461890.1| DNA primase [Acetivibrio cellulolyticus CD2]
Length = 595
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 26/130 (20%)
Query: 292 GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 351
GE II+VEG MD +S+ + G +N V+ S +E Q ++
Sbjct: 255 GEKRIIVVEGYMDVISLYQFGIINTVA---------SLGTALTESQ---------GRILK 296
Query: 352 KQASRIILATDGDPPGQALAEELARRVGRERC--WRVRWPKKNDVDHFKDANEVLMYLGP 409
K A II++ D D GQA + C + PK D D F AN G
Sbjct: 297 KYAEEIIISYDADTAGQAATMRGLNLLDDIGCNVKVLLIPKGKDPDEFIKAN------GA 350
Query: 410 GALKEVVENA 419
A K++V+NA
Sbjct: 351 DAFKKLVDNA 360
>gi|356668254|gb|AET35354.1| DNA primase/helicase protein [uncultured virus]
Length = 230
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668204|gb|AET35329.1| DNA primase/helicase protein [uncultured virus]
Length = 248
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|337752141|ref|YP_004646303.1| DnaC protein [Paenibacillus mucilaginosus KNP414]
gi|379725046|ref|YP_005317177.1| DnaC protein [Paenibacillus mucilaginosus 3016]
gi|386727795|ref|YP_006194121.1| replicative DNA helicase [Paenibacillus mucilaginosus K02]
gi|336303330|gb|AEI46433.1| DnaC [Paenibacillus mucilaginosus KNP414]
gi|378573718|gb|AFC34028.1| DnaC [Paenibacillus mucilaginosus 3016]
gi|384094920|gb|AFH66356.1| replicative DNA helicase [Paenibacillus mucilaginosus K02]
Length = 455
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 24/284 (8%)
Query: 432 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICN 490
+ FD+++ Y++ G G+ +G+ L+++ + +L IV P+ GK+ + + N
Sbjct: 171 EVFDKVEMLYNQ-KGSTTGVRSGFADLDKMTSGFQRSDLIIVAARPSVGKTAFALNIAQN 229
Query: 491 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 550
I + S+E A +L+ + I EAN R F + W
Sbjct: 230 IGVREKETVAIFSLEM----GAAQLVNRMI---CAEANVDAGRLRTG---FLENDDWEKL 279
Query: 551 TFSLIRCEN-----DSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTET 603
T ++ D PS+ AK L+ G+ G+++ Y +L H R
Sbjct: 280 TMAIGSLSEANIYIDDSPSVTVADIRAKCRRLKKEKGL-GMILIDYLQLIHGRGKGDNRQ 338
Query: 604 EYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVI 662
+ VS++ +K+ A+ V ++ R + + P + D+ S D +
Sbjct: 339 QEVSEISRTLKQIARELNVPVIALSQLSRGVEQRQDKRPMMSDLRESGSIEQDADIVAFL 398
Query: 663 HRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL-SYNRVTG 703
+R+ D E+ D +++ + K RN VGT+ AFL +YN+ G
Sbjct: 399 YRDDYYDKESEKKDIIEIIIAKQRNGPVGTVELAFLKNYNKFVG 442
>gi|386810799|ref|ZP_10098025.1| conserved hypothetical protein [planctomycete KSU-1]
gi|386405523|dbj|GAB60906.1| conserved hypothetical protein [planctomycete KSU-1]
Length = 294
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 94/233 (40%), Gaps = 47/233 (20%)
Query: 147 CNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRS---QSSLKKFSKMK 203
C D SLS+ ++ S ++ CF C KG + ++LK+ +M
Sbjct: 36 CPFHDDHNASLSVNVE----SGLYRCF--ACDAKGDVFTFFQELKGVDFPTALKEIGEMA 89
Query: 204 TIREITEDSLELEPLGNELRAYFAERLISAETL-RRNRVMQKRHGHEVVIAFPYWRNGKL 262
+ + +++P ++ A F + ++ + L + R+ R GH F + NGK
Sbjct: 90 GMT-----NTDVKP---KVVAKFEYKDVNGQVLYTKERIEPGREGHSKEFIFKHLENGKW 141
Query: 263 VNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDG 322
V FW+ D V Y L ++ G I+VEGE +A L G
Sbjct: 142 V----------FWRGCDP--VLYRLPELVGSKACIVVEGEA------KADLLTSW----G 179
Query: 323 APSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
P++ S +D Q L K +II+ D D PG+A A ++A
Sbjct: 180 LPATCLDSGASSPIRDEHVQILSGMK-------KIIILPDNDKPGKAYAIKIA 225
>gi|350559406|ref|ZP_08928246.1| replicative DNA helicase [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349781674|gb|EGZ35957.1| replicative DNA helicase [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 453
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 111/278 (39%), Gaps = 43/278 (15%)
Query: 440 YYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWK 498
Y T GI TG++ L+EL + L G+L +V G P+ GK+ + NI E+ K
Sbjct: 176 YLFETKSPITGIPTGYQDLDELTSGLHAGDLVVVAGRPSMGKTSF----AMNIAEYVAMK 231
Query: 499 ----FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----W--L 548
+ SME + A +LL S R+ ++ G+ W L
Sbjct: 232 TAQPIAVFSMEMPGEQIAMRLLS--------------SMGRINQQKLRSGRLDDGDWPRL 277
Query: 549 SNTFSLIR---CENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTET 603
S+ S++ D P++ A++ L H GL++ Y +L +
Sbjct: 278 SSAVSMLSEAPLYIDDTPALSPTELRARSRRLMREHKGLGLIVVDYLQLMQSPGSRENRA 337
Query: 604 EYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVI 662
+S++ +K A+ + + ++ R L + P + D+ S D + +
Sbjct: 338 TEISEISRSLKALAKELSVPMIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADLIVFV 397
Query: 663 HR-----NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+R + P+ G ++ V K RN +GT+ F
Sbjct: 398 YRDEVYNDESPDKG---TAEIIVAKQRNGPIGTVRLTF 432
>gi|334135660|ref|ZP_08509143.1| replicative DNA helicase [Paenibacillus sp. HGF7]
gi|333606855|gb|EGL18186.1| replicative DNA helicase [Paenibacillus sp. HGF7]
Length = 451
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 82/364 (22%), Positives = 154/364 (42%), Gaps = 37/364 (10%)
Query: 350 YLKQ-ASRIILATDGDPPGQALAEE-LARRVGRERCWRVRWPKKNDVDHFKDANEVLMYL 407
YL + A+ + A + D GQ + E+ L RR+ +R + D + A++V M L
Sbjct: 89 YLSELANAVPTAANIDYYGQIVEEKSLLRRL-------IRTASQIVSDGYASADDVGMML 141
Query: 408 GPGALKEVVENAELYPIMGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNELYN 463
+ ++E ++ G + RD F+ ++ Y G GI +G+ L+++ +
Sbjct: 142 NDAEAR-ILEISQRRASNGFISIRDVLMEVFERVEFLYSHKGGST-GIPSGFNDLDKMTS 199
Query: 464 VLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 522
+L IV P+ GK+ + + N+ A + S+E A +L+++ I
Sbjct: 200 GFQRSDLIIVAARPSVGKTAFALNIAQNVGVRAKETVAIFSLEM----GAAQLVQRMICA 255
Query: 523 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN-----DSLPSIKWVLDLAKAAVL 577
EAN + R F +G W T ++ D PS+ AK L
Sbjct: 256 ---EANVDATRLR---SGFLEGDDWEKLTMAIGSLSEADIYIDDSPSVTVADIRAKCRRL 309
Query: 578 RH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLH 634
+ G+ G+++ Y +L R + VS++ +K+ A+ V ++ R +
Sbjct: 310 KQEKGL-GMILIDYLQLIQGRGKGDNRQQEVSEISRTLKQIARELNVPVIALSQLSRGVE 368
Query: 635 NWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIG 692
+ P + D+ S D ++R+ D E+ + +++ + K RN VGT+
Sbjct: 369 QRQDKRPMMSDLRESGSIEQDADIVAFLYRDDYYDKESEKKNIIEIIIAKQRNGPVGTVE 428
Query: 693 EAFL 696
AFL
Sbjct: 429 LAFL 432
>gi|262375307|ref|ZP_06068540.1| replicative DNA helicase [Acinetobacter lwoffii SH145]
gi|262309561|gb|EEY90691.1| replicative DNA helicase [Acinetobacter lwoffii SH145]
Length = 480
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 115/280 (41%), Gaps = 31/280 (11%)
Query: 432 DYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICN 490
D FD+++ + G G++TG+ L N+ + G+L IV P+ GK+ + L+ +
Sbjct: 194 DVFDKLNEL-SQMEGSITGLTTGFVELDNKTSGMQSGDLIIVAARPSMGKTTFAMNLVES 252
Query: 491 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA---- 546
+ + ++ SME A +L+ +++G R+ GK
Sbjct: 253 VLFNNNLPALVYSMEMPADSIAMRLI----------SSFG----RVHQGHLRSGKMDSDE 298
Query: 547 WLSNTFSLIRCE--------NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
W T +++ + + +LP + + A + G G ++ Y +L +
Sbjct: 299 WSKVTSTIVHLQEKNLYIDDSSALPPTELRARARRIAKMHGGKLGCIMVDYLQLMKVPGM 358
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCD 657
+S++ +K A+ C V ++ R L N + P + D+ S D
Sbjct: 359 GDNRVGEISEISRSLKALAKEMQCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDAD 418
Query: 658 NGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+ I+R+ + E+ ++ + K RN +GT+ AF
Sbjct: 419 LIMFIYRDEVYNKESKEAGTAEIIIGKQRNGPIGTVRLAF 458
>gi|206890471|ref|YP_002248184.1| replicative DNA helicase [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206742409|gb|ACI21466.1| replicative DNA helicase [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 460
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 133/328 (40%), Gaps = 33/328 (10%)
Query: 398 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDY----FDEIDAYYHRTSGDEFGIST 453
+DA E++ Y A + + E +E +N +D F I++ Y + + G+S+
Sbjct: 139 EDAEEMIDY----AERLIFEISEKRTNTSFYNMKDVVKQTFKIIESMYEKKAVIT-GVSS 193
Query: 454 GWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKF----VLCSMENKV 508
G++ L+EL + PG+L I+ G P GK+ A NI +H G + S+E
Sbjct: 194 GFKDLDELTSGFQPGDLIIIGGRPGMGKT----AFSLNIAQHVGIELGEPVAFFSLEMSK 249
Query: 509 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWV 568
+ A +LL I A G + E LS + I ++ S S+ +
Sbjct: 250 EQIAMRLL-SSIAMVNSSALRKGFISKRDWERITDAAVKLSE--APIYIDDSSQMSVLEI 306
Query: 569 LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 628
A+ + G GL++ Y +L R + ++ + +K A+ V ++
Sbjct: 307 RAKARRLKMEKGRLGLIVIDYLQLMRSRNNYDVREQEIADISRSLKAMAKELKVPVIALS 366
Query: 629 H-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN-----RDPEAGPIDRVQVCVRK 682
R + P L ++ S D I ++R+ ++P + +V V K
Sbjct: 367 QLNRSVEKTSDRRPTLANLRESGAIEQDADVIIFLYRDEVYNKKNPANK--GKAEVIVAK 424
Query: 683 VRNKVVGTIGEAFLS-YNRV---TGEYM 706
RN + FL+ Y R T +YM
Sbjct: 425 QRNGPTDIVYLTFLNDYTRFLDYTDKYM 452
>gi|356668230|gb|AET35342.1| DNA primase/helicase protein [uncultured virus]
Length = 234
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668226|gb|AET35340.1| DNA primase/helicase protein [uncultured virus]
Length = 232
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668264|gb|AET35359.1| DNA primase/helicase protein [uncultured virus]
Length = 230
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668228|gb|AET35341.1| DNA primase/helicase protein [uncultured virus]
Length = 233
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|415721223|ref|ZP_11468430.1| replicative DNA helicase [Gardnerella vaginalis 00703Bmash]
gi|388061011|gb|EIK83680.1| replicative DNA helicase [Gardnerella vaginalis 00703Bmash]
Length = 487
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 110/260 (42%), Gaps = 20/260 (7%)
Query: 448 EFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
E G+ TG+R ++++ L PG++ +V G P GKS + H ++ S+E
Sbjct: 204 EKGVPTGFRDIDDMTQGLQPGQMVVVAGRPAMGKSTLGIDFARSAALHHNMTTIVFSLEM 263
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 566
E A++++ P A + G+ E +T + + + A+ S +DS P++
Sbjct: 264 NKLELAQRIIAAETDIP-MTAMHRGTPEDITTDRWTKLNAFWSKMKDAPLFIDDS-PNMS 321
Query: 567 WVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624
+ AK L+ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 322 LMEIRAKCRRLKQTNDLKLVVIDYLQLMTSGKRVESRQQE-VSEFSRALKLLAKELEVPV 380
Query: 625 WFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRV 676
++ P ++ + P L D+ S D ++HR N++ G D
Sbjct: 381 VALSQLNRGPEMRND---KKPQLSDLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD-- 435
Query: 677 QVCVRKVRNKVVGTIGEAFL 696
+ + K RN T AFL
Sbjct: 436 -IIMAKHRNGPTETFNLAFL 454
>gi|356668242|gb|AET35348.1| DNA primase/helicase protein [uncultured virus]
Length = 233
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668236|gb|AET35345.1| DNA primase/helicase protein [uncultured virus]
Length = 227
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668232|gb|AET35343.1| DNA primase/helicase protein [uncultured virus]
Length = 230
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668256|gb|AET35355.1| DNA primase/helicase protein [uncultured virus]
Length = 244
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ A+E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAAKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++ GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLAAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668200|gb|AET35327.1| DNA primase/helicase protein [uncultured virus]
Length = 233
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGVDLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|33601193|ref|NP_888753.1| hypothetical protein BB2209 [Bordetella bronchiseptica RB50]
gi|33602485|ref|NP_890045.1| hypothetical protein BB3510 [Bordetella bronchiseptica RB50]
gi|427818127|ref|ZP_18985190.1| phage-related hypothetical protein [Bordetella bronchiseptica D445]
gi|33575628|emb|CAE32706.1| phage-related hypothetical protein [Bordetella bronchiseptica RB50]
gi|33576924|emb|CAE34004.1| phage-related hypothetical protein [Bordetella bronchiseptica RB50]
gi|410569127|emb|CCN17212.1| phage-related hypothetical protein [Bordetella bronchiseptica D445]
Length = 313
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 30/230 (13%)
Query: 446 GDEF-GISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504
GD+ G W ++L PGE+T+ G+ GKSE + C G + + S
Sbjct: 42 GDQITGAKLPWSKTHDLLRFRPGEVTLWQGINGHGKSELL-GQACIGFATQGERVCIASF 100
Query: 505 ENKVREHARKLLEKHI--KKPFFEAN---YGGSAERMTVEEFEQGKAWLSNTFSLIRCEN 559
E K + +++L + +P +A S +R+ + + +QG + +++IR
Sbjct: 101 EMKPQATLKRMLRQTAMNARPGVQAVDRLIDWSRDRLWLYD-QQGTVTPAMLYAVIRYCA 159
Query: 560 DSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 619
D L V+D L VRG D YN + ++V + T+ +
Sbjct: 160 DRLKVRHMVID-----SLMKCVRGE--DDYN----------GQKDFVDMLCTLARDLRM- 201
Query: 620 HACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669
H+ V H ++ N + P + GS +++ D + + RN+ E
Sbjct: 202 ---HIHLVHHAKKGEN-EDQVPGKFSAKGSGAIVDQVDQMLTVWRNKKKE 247
>gi|430762517|ref|YP_007218374.1| Replicative DNA helicase [Thioalkalivibrio nitratireducens DSM
14787]
gi|430012141|gb|AGA34893.1| Replicative DNA helicase [Thioalkalivibrio nitratireducens DSM
14787]
Length = 453
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 111/278 (39%), Gaps = 43/278 (15%)
Query: 440 YYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWK 498
Y T G TG++ L+EL + L PG+L +V G P+ GK+ + NI E+ K
Sbjct: 176 YLFETKSPITGTPTGYQDLDELTSGLHPGDLVVVAGRPSMGKTSF----AMNIAEYVAMK 231
Query: 499 ----FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----W--L 548
+ SME + A +LL S R+ ++ G+ W L
Sbjct: 232 TAQPIAVFSMEMPGEQIAMRLLS--------------SMGRINQQKLRSGRLDDGDWPRL 277
Query: 549 SNTFSLIR---CENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTET 603
++ S++ D P++ A++ L H GL++ Y +L +
Sbjct: 278 TSAVSMLSEAPLYIDDTPALSPTELRARSRRLMREHKGLGLIVVDYLQLMQSPGGRENRA 337
Query: 604 EYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVI 662
+S++ +K A+ + + ++ R L + P + D+ S D + +
Sbjct: 338 TEISEISRSLKALAKELSVPMIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADLIVFV 397
Query: 663 HRN-----RDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+R+ P+ G ++ V K RN +GT+ F
Sbjct: 398 YRDEVYNEESPDKG---TAEIIVAKQRNGPIGTVRLTF 432
>gi|407009761|gb|EKE24836.1| hypothetical protein ACD_6C00024G0001 [uncultured bacterium]
Length = 480
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 115/280 (41%), Gaps = 31/280 (11%)
Query: 432 DYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICN 490
D FD+++ + G G++TG+ L N+ + G+L IV P+ GK+ + L+ +
Sbjct: 194 DVFDKLNEL-SQMEGSITGLTTGFVELDNKTSGMQSGDLIIVAARPSMGKTTFAMNLVES 252
Query: 491 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA---- 546
+ + ++ SME A +L+ +++G R+ GK
Sbjct: 253 VLFNNNLPALVYSMEMPADSIAMRLI----------SSFG----RVHQGHLRSGKMDSDE 298
Query: 547 WLSNTFSLIRCE--------NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598
W T +++ + + +LP + + A + G G ++ Y +L +
Sbjct: 299 WSKVTSTIVHLQEKNLYIDDSSALPPTELRSRARRIAKMHGGKLGCIMVDYLQLMKVPGM 358
Query: 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCD 657
+S++ +K A+ C V ++ R L N + P + D+ S D
Sbjct: 359 GDNRVGEISEISRSLKALAKEMQCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDAD 418
Query: 658 NGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+ I+R+ + E+ ++ + K RN +GT+ AF
Sbjct: 419 LIMFIYRDEVYNKESKEAGTAEIIIGKQRNGPIGTVRLAF 458
>gi|406911249|gb|EKD51085.1| hypothetical protein ACD_62C00350G0013 [uncultured bacterium]
Length = 487
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 112/275 (40%), Gaps = 16/275 (5%)
Query: 431 RDYFDEIDAYYHRTSGDEFGISTGWRALNELY-NVLPGELTIVTGVPNSGKSEWIDALIC 489
+D + +I+ + G G++TG+R L+ L +L IV G P+ GK+ + ++
Sbjct: 181 KDTYKQIEHLFEH-KGHITGLATGFRELDNLTAGFQKSDLIIVAGRPSMGKTAFAMNVVE 239
Query: 490 NINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS 549
N K + S+E +LL H + G+ E + LS
Sbjct: 240 NACRLNNAKVAVYSLEMSKESLMMRLLTSHARIDASRVR-TGNLEEADWPKLLAAAEDLS 298
Query: 550 NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRG--LVIDPYNELDHQRPVSQTETEYVS 607
N I D P+ + AKA L V G L++ Y +L Q+ + +S
Sbjct: 299 NYGIYI----DDQPAQSTLEVRAKARHLSKTVGGLDLILIDYLQLMQASGNHQSREQEIS 354
Query: 608 QMLTMVKRFAQHHACHVWFVAHP---RQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664
++ +K A+ HV VA R L + + P + D+ S D ++R
Sbjct: 355 EISRSLKALAKD--LHVPVVAISQLNRSLESRQNKRPMMSDLRESGAIEQDADLIAFVYR 412
Query: 665 NR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 697
+ +P++ +V V K RN +GT AF++
Sbjct: 413 DEVYNPDSPDKGIAEVIVGKQRNGAIGTTRLAFIN 447
>gi|356668220|gb|AET35337.1| DNA primase/helicase protein [uncultured virus]
Length = 247
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFGKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELGVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|304312029|ref|YP_003811627.1| Replicative DNA helicase [gamma proteobacterium HdN1]
gi|301797762|emb|CBL45984.1| Replicative DNA helicase [gamma proteobacterium HdN1]
Length = 464
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 115/281 (40%), Gaps = 31/281 (11%)
Query: 430 FRDYFDEIDAYYHRTSGDEF--GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDA 486
+D + ID + S DE G++TG+ L+ + + L P +L IV P+ GK+ +
Sbjct: 180 LKDTVNRIDKLF---SSDEAITGVATGFTDLDNMTSGLQPADLVIVAARPSMGKTTFAMN 236
Query: 487 LICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE------RMTVEE 540
L N+ +G ++ SME ++L + G E V
Sbjct: 237 LSENVLIRSGKPVLVFSMEMPAESIVMRMLSSLGRIDQTRVRSGKLEEDDWPRFNSAVSM 296
Query: 541 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600
+ K ++ ++ L E + A+ V HG L++ Y +L + P ++
Sbjct: 297 LAEQKLFIDDSAGLSPSE---------LRARARRVVRDHGPLALIMVDYLQL-MKVPGAE 346
Query: 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNL----YDISGSAHFINKC 656
+S++ +K A+ C V ++ QL+ + + PN D+ S
Sbjct: 347 NRVSEISEISRSLKALAKEMDCPVVALS---QLNRGLEQRPNKRPINSDLRESGAIEQDA 403
Query: 657 DNGIVIHRNRDPEAGPIDR--VQVCVRKVRNKVVGTIGEAF 695
D + I+R+ G D+ ++ + K RN +GT+ AF
Sbjct: 404 DIIMFIYRDEVYNEGSDDKGIAEIIIGKQRNGPIGTVRLAF 444
>gi|356668248|gb|AET35351.1| DNA primase/helicase protein [uncultured virus]
Length = 232
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGARSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668212|gb|AET35333.1| DNA primase/helicase protein [uncultured virus]
Length = 229
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELGVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|326790056|ref|YP_004307877.1| helicase DnaB [Clostridium lentocellum DSM 5427]
gi|326540820|gb|ADZ82679.1| DnaB domain protein helicase domain protein [Clostridium
lentocellum DSM 5427]
Length = 514
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 97/249 (38%), Gaps = 40/249 (16%)
Query: 430 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALIC 489
R YF +ID +T G E G L ++TG +GKSE+ L
Sbjct: 217 IRKYFTQIDMIDGKTGGLE-----------------SGGLWLITGHTGNGKSEFAMQLSL 259
Query: 490 NINEHAGWKFVLCSMENKVREHAR---KLLEKH--IKKPFFEANYGGSAE------RMTV 538
++ + G F E K R ++ KL ++ IK P YGG +T
Sbjct: 260 SVVQQDGKVFYYAGEETKERFLSKLELKLADQKDIIKTP--RKLYGGRYSAFDFDYSVTY 317
Query: 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD---HQ 595
E Q K WL N + + + + V+++ + GV +D L
Sbjct: 318 ETDHQIKKWLKNKYFIFDGQFKKNNLVDSVIEMLEGMHKEKGVTVFFLDNLMTLTCEIET 377
Query: 596 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINK 655
+ ++ +TE + ++ +F +++ V VAHP + + D+SGS + +N
Sbjct: 378 QKLNSIQTELTNALV----QFCKNYNVTVVLVAHPNKSSELDIQNK---DVSGSFNVVNL 430
Query: 656 CDNGIVIHR 664
I + R
Sbjct: 431 ASVVITVRR 439
>gi|453042357|gb|EME90102.1| hypothetical protein H123_30953 [Pseudomonas aeruginosa PA21_ST175]
Length = 463
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 104/252 (41%), Gaps = 29/252 (11%)
Query: 452 STGWRALNELY-NVLPGELTIVTGVPNSGKSEWIDALICNINEH----AGWKFVLCSMEN 506
TG L++L + P ++T++ G+P SGK+ L I +H AG +++ S+E
Sbjct: 183 GTGLVDLDKLVRGIRPRKITVIAGLPGSGKT----TLALQIAQHNACEAGEPWLVFSLEM 238
Query: 507 KVREHARKLLEKHIKKPFFEANYGG-SAERMTVEEFEQGKAWLSNTFSLIRCENDSL--- 562
E + + A+ GG +R+ + W T ++ + + L
Sbjct: 239 PEEELGVRAI----------ASLGGVDLKRLDDPQQLGDDDWPRITSAVAKAKGAPLFIC 288
Query: 563 --PSI--KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQ 618
P++ + +A+ HG+ G+V+D Y L +T +E V + + R A+
Sbjct: 289 DDPNVTASQIRSIARRVKREHGLAGIVVD-YLGLIPPEAKGRTRSEEVGRTNKALLRLAK 347
Query: 619 HHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 677
V +A R G+ P D+ S +++HR+ D EAG +
Sbjct: 348 ELGVPVIELAQLNRDSTKRPGKRPQSSDLRDSGEIEADASCILMVHRDMDSEAGQNGITE 407
Query: 678 VCVRKVRNKVVG 689
+ + K R+ G
Sbjct: 408 ILMTKCRHAPPG 419
>gi|294649986|ref|ZP_06727374.1| replicative DNA helicase [Acinetobacter haemolyticus ATCC 19194]
gi|292824079|gb|EFF82894.1| replicative DNA helicase [Acinetobacter haemolyticus ATCC 19194]
Length = 481
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 112/264 (42%), Gaps = 20/264 (7%)
Query: 443 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G+ G++TG+ L N+ + G+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFVELDNKTSGMQAGDLIIVAARPSMGKTTFAMNLVESVLQYNRLPALV 264
Query: 502 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
SME A +L+ + H++ +A+ T+ + ++ ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQEMHLYIDDS--- 320
Query: 555 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTELRARARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 615 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 671
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMNCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 672 PIDRVQVCVRKVRNKVVGTIGEAF 695
++ + K RN +G++ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGSVRLAF 459
>gi|238925602|ref|YP_002939119.1| replicative DNA helicase [Eubacterium rectale ATCC 33656]
gi|238877278|gb|ACR76985.1| replicative DNA helicase [Eubacterium rectale ATCC 33656]
Length = 434
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 110/265 (41%), Gaps = 27/265 (10%)
Query: 446 GDEFGISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC-- 502
G GI TG+ L+ + P +L +V P+ GK+ A + NI +H + LC
Sbjct: 172 GTVTGIPTGFIDLDYRTAGLQPSDLVLVAARPSMGKT----AFVLNIAQHVAFHAHLCTA 227
Query: 503 --SMENKVREHARKL--LEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE 558
S+E + +L LE + +A G+ E+ +G + ++ +I
Sbjct: 228 IFSLEMSKEQLVNRLFSLESKVDA---QALRTGNLSDADWEKLVEGAGIIGDSELII--- 281
Query: 559 NDSLP--SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRF 616
D P SI + + L H ++ ++ID + S++ + +S + +K
Sbjct: 282 -DDTPGISISELRSKCRKYKLEHDLKLIIIDYLQLMTGSGRGSESRQQEISDISRSLKAL 340
Query: 617 AQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAG 671
A+ + V ++ R + P L D+ S D + I+R N+D E
Sbjct: 341 ARELSVPVVALSQLSRAVEQRPDHRPMLSDLRESGAIEQDADVVMFIYRDDYYNKDTELK 400
Query: 672 PIDRVQVCVRKVRNKVVGTIGEAFL 696
I ++ + K RN +GT+ A+L
Sbjct: 401 GIS--EIIIAKQRNGPIGTVNLAWL 423
>gi|410679494|ref|YP_006931896.1| DNA primase [Borrelia afzelii HLJ01]
gi|408536882|gb|AFU75013.1| DNA primase [Borrelia afzelii HLJ01]
Length = 592
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 55/257 (21%)
Query: 190 NRSQSSLKKFSKMKTIREITEDSLELEPL------GNELRAYFAERLISAETLRRNRVMQ 243
N+++ +L K + I + D EL L G EL + + S+E L+++ +
Sbjct: 132 NKNKKALDYVLKSRAISKEVVDLFELGYLPLNVKDGLELHGFLVSKGYSSEILKKSGLFS 191
Query: 244 KRHGHEVVIA----FPYWR-NGKLVNCKYRDFNKK-----------FWQEKDTEKVFY-G 286
K + +++ FP G +V RD + K +++K+ FY G
Sbjct: 192 KINPKASILSQRLIFPIKDFKGNVVGFGGRDLDGKGSKYINLSETEVFKKKELLYGFYEG 251
Query: 287 LDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 346
LD+I+ +I+VEG +D L+ +G VS +S SK+++
Sbjct: 252 LDEIKSTKSVILVEGYIDVLAFFTSGIKRAVST---LGTSFSKEHLV------------- 295
Query: 347 CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV-----DHFKDAN 401
+ + A II + DGD G + + +++ P +V D +D
Sbjct: 296 --LIQRYADEIIFSFDGDDAGLS---------ATLKAYQICLPFNINVSVVKMDFGRDPA 344
Query: 402 EVLMYLGPGALKEVVEN 418
+VL G +L+E++ N
Sbjct: 345 DVLKSEGESSLQEILNN 361
>gi|226952673|ref|ZP_03823137.1| replicative DNA helicase; chromosome replication, chain elongation
[Acinetobacter sp. ATCC 27244]
gi|226836579|gb|EEH68962.1| replicative DNA helicase; chromosome replication, chain elongation
[Acinetobacter sp. ATCC 27244]
Length = 481
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 112/264 (42%), Gaps = 20/264 (7%)
Query: 443 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501
+ G+ G++TG+ L N+ + G+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFVELDNKTSGMQAGDLIIVAARPSMGKTTFAMNLVESVLQYNRLPALV 264
Query: 502 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
SME A +L+ + H++ +A+ T+ + ++ ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQEMHLYIDDS--- 320
Query: 555 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTELRARARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 615 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 671
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMNCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 672 PIDRVQVCVRKVRNKVVGTIGEAF 695
++ + K RN +G++ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGSVRLAF 459
>gi|281418679|ref|ZP_06249698.1| regulatory protein DeoR [Clostridium thermocellum JW20]
gi|281407763|gb|EFB38022.1| regulatory protein DeoR [Clostridium thermocellum JW20]
Length = 675
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 208 ITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEV----VIAFPYWRNGKLV 263
I E L P ++ Y R I E L R H E + P+ GK+
Sbjct: 137 IKEAKARLRPELPIVQEYITARGIKYEMLERFEWGYVPHDEEAGQVECLVVPFRVRGKIR 196
Query: 264 NCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVP-DG 322
+ R ++ + K++ + LD +EG+S +IVEGE D L +A V +P
Sbjct: 197 AIRGRAYDGRKGAVKNSRFSLWNLDSLEGKSQAVIVEGESDALRTIQALEACGVDIPVVS 256
Query: 323 APSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRER 382
P + +K E + + YL + D D + LA +G ER
Sbjct: 257 VPGNNFRKEWKREFEGIRTVYL--------------IPQDDDASANFVRSALA-VLGEER 301
Query: 383 CWRVRWP-KKNDV 394
C V P K+ DV
Sbjct: 302 CKVVELPWKRGDV 314
>gi|325066289|ref|ZP_08124962.1| replicative DNA helicase [Actinomyces oris K20]
gi|343523275|ref|ZP_08760237.1| replicative DNA helicase [Actinomyces sp. oral taxon 175 str.
F0384]
gi|343400431|gb|EGV12949.1| replicative DNA helicase [Actinomyces sp. oral taxon 175 str.
F0384]
Length = 474
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 104/269 (38%), Gaps = 18/269 (6%)
Query: 436 EIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEH 494
EI+A +R +G G+ TG+ L+EL L PG++ IV P GKS + + H
Sbjct: 194 EIEAAQNRDNGALTGVPTGFIELDELTGGLHPGQMIIVAARPAMGKSTLAVDFCRSASIH 253
Query: 495 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
G S+E E ++L + E + +SN
Sbjct: 254 HGITSCYFSLEMGRMELMMRILAAESSVDMNKLRGSRQMEDRDWTDVAVAYNPVSNAPLF 313
Query: 555 I-RCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLT 611
I N ++P I+ +KA ++ H + +VID + + V + E VS+
Sbjct: 314 IDDSPNLTMPEIR-----SKALRMKQQHNLGLMVIDYLQLMSSGKRVESRQQE-VSEFSR 367
Query: 612 MVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NR 666
+K A+ V VA R G P + D+ S D +++HR N
Sbjct: 368 SLKLLAKELEIPVIAVAQLNRGPEQRTGNKPQMSDLRESGSLEQDADIIVLLHRPEYYNN 427
Query: 667 DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+ G D + V K RN TI AF
Sbjct: 428 EERPGEAD---IIVAKHRNGQTRTIPVAF 453
>gi|321474533|gb|EFX85498.1| hypothetical protein DAPPUDRAFT_314156 [Daphnia pulex]
Length = 688
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 80/377 (21%), Positives = 139/377 (36%), Gaps = 76/377 (20%)
Query: 316 CVSVPDGA-PSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEEL 374
C++VP PS +S N+P +L+ +I L G A
Sbjct: 306 CLAVPAVCLPSGIS--NLP-----------LATMAFLESFRKITLWLGHGVQGSDCARAF 352
Query: 375 ARRVGRERCWRVRWPKKNDVDHF-----KDANEVLMYLGPGALKEVVENAELYPIMGLFN 429
AR++G +RC +R ++ K+ +VL P K V + L
Sbjct: 353 ARKLGEKRCHLIRSSEETPSALLCRMKGKNVAQVLKAALPMTHKSVTTFSSLR------- 405
Query: 430 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWID 485
++ ++EI + SG WR L ++L G ELT+ TG +GK+ ++
Sbjct: 406 -KEVYEEI-TQSSKVSG------VRWRRFPILTDLLKGHRRGELTVFTGPTGAGKTTFL- 456
Query: 486 ALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK 545
+ + LC + + + ++ + K + G E T E
Sbjct: 457 ---------SEYSLDLCGQDVRTLWGSFEIRNVRLAKMMLQQFSGLLLESETRE------ 501
Query: 546 AWLSNTFSLIRCENDSLP----------SIKWVLDLAKAAVLRHGVRGLVIDPYNEL--D 593
TF ++ + + LP ++ VL+ AV + + +VID +
Sbjct: 502 -----TFDIVADKFEKLPMYYLAFHGQQNVTSVLEAMSHAVYVYDISHVVIDNLQFMMGT 556
Query: 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 653
+S Q++ +RFA + HV V HPR+ E + I G A
Sbjct: 557 SNENLSMDRYHRQDQIIGSFRRFATDNNVHVTLVIHPRK---EAMEELSTSSIFGGAKAS 613
Query: 654 NKCDNGIVIH--RNRDP 668
+ DN +++ R DP
Sbjct: 614 QEADNILILQDKRTNDP 630
>gi|216263403|ref|ZP_03435398.1| conserved hypothetical protein [Borrelia afzelii ACA-1]
gi|215980247|gb|EEC21068.1| conserved hypothetical protein [Borrelia afzelii ACA-1]
Length = 593
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 55/257 (21%)
Query: 190 NRSQSSLKKFSKMKTIREITEDSLELEPL------GNELRAYFAERLISAETLRRNRVMQ 243
N+++ +L K + I + D EL L G EL + + S+E L+++ +
Sbjct: 132 NKNKKALDYVLKSRAISKEVVDLFELGYLPLNVKDGLELHGFLVSKGYSSEILKKSGLFS 191
Query: 244 KRHGHEVVIA----FPYWR-NGKLVNCKYRDFNKK-----------FWQEKDTEKVFY-G 286
K + +++ FP G +V RD + K +++K+ FY G
Sbjct: 192 KINPKASILSQRLIFPIKDFKGNVVGFGGRDLDGKGSKYINLSETEVFKKKELLYGFYEG 251
Query: 287 LDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 346
LD+I+ +I+VEG +D L+ +G VS +S SK+++
Sbjct: 252 LDEIKSTKSVILVEGYIDVLAFFTSGIKRAVST---LGTSFSKEHLV------------- 295
Query: 347 CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV-----DHFKDAN 401
+ + A II + DGD G + + +++ P +V D +D
Sbjct: 296 --LIQRYADEIIFSFDGDDAGLS---------ATLKAYQICLPFNINVSVVKMDFGRDPA 344
Query: 402 EVLMYLGPGALKEVVEN 418
+VL G +L+E++ N
Sbjct: 345 DVLKSEGESSLQEILNN 361
>gi|111115541|ref|YP_710159.1| DNA primase [Borrelia afzelii PKo]
gi|384207196|ref|YP_005592918.1| DNA primase [Borrelia afzelii PKo]
gi|110890815|gb|ABH01983.1| DNA primase [Borrelia afzelii PKo]
gi|342857080|gb|AEL69928.1| DNA primase [Borrelia afzelii PKo]
Length = 593
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 55/257 (21%)
Query: 190 NRSQSSLKKFSKMKTIREITEDSLELEPL------GNELRAYFAERLISAETLRRNRVMQ 243
N+++ +L K + I + D EL L G EL + + S+E L+++ +
Sbjct: 132 NKNKKALDYVLKSRAISKEVVDLFELGYLPLNVKDGLELHGFLVSKGYSSEILKKSGLFS 191
Query: 244 KRHGHEVVIA----FPYWR-NGKLVNCKYRDFNKK-----------FWQEKDTEKVFY-G 286
K + +++ FP G +V RD + K +++K+ FY G
Sbjct: 192 KINPKASILSQRLIFPIKDFKGNVVGFGGRDLDGKGSKYINLSETEVFKKKELLYGFYEG 251
Query: 287 LDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 346
LD+I+ +I+VEG +D L+ +G VS +S SK+++
Sbjct: 252 LDEIKSTKSVILVEGYIDVLAFFTSGIKRAVST---LGTSFSKEHLV------------- 295
Query: 347 CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV-----DHFKDAN 401
+ + A II + DGD G + + +++ P +V D +D
Sbjct: 296 --LIQRYADEIIFSFDGDDAGLS---------ATLKAYQICLPFNINVSVVKMDFGRDPA 344
Query: 402 EVLMYLGPGALKEVVEN 418
+VL G +L+E++ N
Sbjct: 345 DVLKSEGESSLQEILNN 361
>gi|145514790|ref|XP_001443300.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410678|emb|CAK75903.1| unnamed protein product [Paramecium tetraurelia]
Length = 416
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 261 KLVNCKYRDFNK--KFWQE---KDTEKVFYGLDDIEGE-SDIIIVEGEMDKLSMEEAGFL 314
+LV+CK R K K+ Q+ K+ K +GL+ + + II+ EGE D ++ + +
Sbjct: 263 ELVSCKLRGMGKENKYIQKIEPKNAMKGIFGLNLLTKDVKQIILTEGEFDAMAAYQMTGI 322
Query: 315 NCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEEL 374
+S+P G + P+ +L K+ + I++ D D G+ + ++
Sbjct: 323 PSISLPYGIA------HFPN--------FLLEWINEYKELNNILVWVDDDDFGRVNSHKI 368
Query: 375 ARRVGRERCWRVRWPKKNDVDHF-KDANEVLMYLGPGALKEVVENA 419
A ++G + R+ P + D + KDAN+ L Y P ++E + +
Sbjct: 369 ATKIGHWKT-RIIQPSSVNADQYPKDANDCLRYY-PDRVQEYISKS 412
>gi|420143842|ref|ZP_14651335.1| DNA primase [Lactococcus garvieae IPLA 31405]
gi|391856231|gb|EIT66775.1| DNA primase [Lactococcus garvieae IPLA 31405]
Length = 628
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 33/200 (16%)
Query: 238 RNRVM---QKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDD----I 290
+NR+M + +GH V + W+ KY N + D Y LD I
Sbjct: 197 QNRIMFPLKNEYGHVVGFSGRKWQENDTSKAKY--INTSATKIFDKSYELYNLDRAKPVI 254
Query: 291 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMY 350
++ ++EG MD ++ +AG N V+ +++++K+V K
Sbjct: 255 SKTREVYLMEGFMDVIAAYKAGIFNVVAT---MGTALTEKHV---------------KRL 296
Query: 351 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPG 410
K A +L DGD GQ + +G E+ VR P+ D D + +
Sbjct: 297 KKIAKNYVLIYDGDQAGQNAIYKAIDLIGEEKTQIVRVPEGLDPDDYSKKYSL------E 350
Query: 411 ALKEVVENAELYPIMGLFNF 430
+L ++EN+ + P L ++
Sbjct: 351 SLAGLMENSRIQPTEFLIDY 370
>gi|441463250|gb|AGC35532.1| putative DNA primase/helicase protein [Rhizobium phage RHEph01]
Length = 489
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 109/498 (21%), Positives = 182/498 (36%), Gaps = 53/498 (10%)
Query: 219 GNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRN-GKLVNCKYRDFNKKFWQE 277
G E RA ++R I+ ET R+ ++V PY+ + G L K R +K F
Sbjct: 8 GGEYRA-LSKRGITEETCRKFGYQIGHFKDQLVHIAPYFDDEGNLTAQKIRFADKTFTVT 66
Query: 278 KDTEKVFYGLDDI--EGESDIIIVEGEMDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVP 333
+ + ++ G ++I EGE+D +S+ + VS+ +GA S+ +
Sbjct: 67 GNMKPALLFGQNLWSGGGRKVVITEGEIDAMSVSQVQGNKWPVVSIQNGAQSAKKALSAA 126
Query: 334 SEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKND 393
E +L ++L D D PG+ A A +C R P
Sbjct: 127 LE--------------WLTTFEEVVLMFDMDEPGREAAAACAALFPPGKCKIARLPD--- 169
Query: 394 VDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIST 453
KD N +LM + + A+ Y G+ +F+D I R E G+
Sbjct: 170 ----KDPNALLMAGKGDEIITAIWQAQTYRPDGVVSFKD----IKEAARRPI--EMGLRW 219
Query: 454 GWRALNEL-YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 512
L +L Y GE+ GK++++ I G K + +E E A
Sbjct: 220 FCERLTKLTYGRRFGEVYAFGAGTGIGKTDFLTQQITFDVTELGQKVGVFFLEQMPTETA 279
Query: 513 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLA 572
++L K K+ F + G T E ++ L DS + +W +
Sbjct: 280 KRLAGKFAKRRFHIPDDG-----WTDAELDEALNKLDQDMLFF---YDSFGATEWSVIRE 331
Query: 573 KAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH- 629
L H GV+ ID L E + + Q++ + A+ + V+H
Sbjct: 332 TIRYLAHSEGVKVFYIDHLTAL---AAAEDDERKALEQIMAEMAALAKELGIIIHLVSHL 388
Query: 630 --PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKV 687
P + G + GS C + R++ E + R R ++++
Sbjct: 389 ATPEGKPHEEGGRVMIRHFKGSRAIGFWCHYMFGLERDQQHEDERL-RAVTTFRVLKDRY 447
Query: 688 VG-TIGEA-FLSYNRVTG 703
G GE +L Y R TG
Sbjct: 448 TGQATGEVIYLGYERETG 465
>gi|256005292|ref|ZP_05430258.1| Helix-turn-helix type 11 domain protein [Clostridium thermocellum
DSM 2360]
gi|385777857|ref|YP_005687022.1| regulatory protein DeoR [Clostridium thermocellum DSM 1313]
gi|419723262|ref|ZP_14250395.1| regulatory protein DeoR [Clostridium thermocellum AD2]
gi|419727093|ref|ZP_14254099.1| regulatory protein DeoR [Clostridium thermocellum YS]
gi|255990728|gb|EEU00844.1| Helix-turn-helix type 11 domain protein [Clostridium thermocellum
DSM 2360]
gi|316939537|gb|ADU73571.1| regulatory protein DeoR [Clostridium thermocellum DSM 1313]
gi|380769498|gb|EIC03412.1| regulatory protein DeoR [Clostridium thermocellum YS]
gi|380780727|gb|EIC10392.1| regulatory protein DeoR [Clostridium thermocellum AD2]
Length = 675
Score = 40.4 bits (93), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 208 ITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEV----VIAFPYWRNGKLV 263
I E L P ++ Y R I E L R H E + P+ GK+
Sbjct: 137 IKEAKARLRPELPIVQEYITARGIKYEMLERFEWGYVPHDEEAGQVECLVVPFRVRGKIR 196
Query: 264 NCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVP-DG 322
+ R ++ + K++ + LD +EG+S +IVEGE D L +A V +P
Sbjct: 197 AIRGRAYDGRKGAVKNSRFSLWNLDSLEGKSQAVIVEGESDALRTIQALEACGVDIPVVS 256
Query: 323 APSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRER 382
P + +K E + + YL + D D + LA +G ER
Sbjct: 257 VPGNNFRKEWKREFEGIRTIYL--------------IPQDDDASANFVRSALA-VLGEER 301
Query: 383 CWRVRWP-KKNDV 394
C V P K+ DV
Sbjct: 302 CKVVELPWKRGDV 314
>gi|373855219|ref|ZP_09597965.1| replicative DNA helicase [Bacillus sp. 1NLA3E]
gi|372454288|gb|EHP27753.1| replicative DNA helicase [Bacillus sp. 1NLA3E]
Length = 454
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 130/322 (40%), Gaps = 28/322 (8%)
Query: 395 DHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDY----FDEIDAYYHRTSGDEFG 450
D + +EV LG A K ++E A+ N +D +D I+ +R GD G
Sbjct: 128 DGYSREDEVTTLLGE-AEKSILEVAQRKNAGAFHNIKDVLVRTYDNIELLNNR-KGDVTG 185
Query: 451 ISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 509
I+TG+ L+ + +L IV P+ GK+ + + N+ G + S+E
Sbjct: 186 IATGFSELDRMTAGFQRNDLIIVGARPSVGKTAFALNIAQNVATKTGENVAIFSLEMGAE 245
Query: 510 EHARKLL--EKHIKKPFFEANYGGSAERMTVEE---FEQGKAWLSNTFSLIRCENDSLPS 564
+ ++L E +I +T E+ LSN I D P
Sbjct: 246 QLVMRMLCAEGNINAQNLRTGA------LTDEDWGKLTMAMGSLSNAGIFI----DDTPG 295
Query: 565 IKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHAC 622
++ +K L+ HG+ ++ID + + + VS++ +K+ A+
Sbjct: 296 VRIGEIRSKCRRLKQEHGLGMVLIDYLQLIQGDGRSGENRQQEVSEISRTLKQLARELEV 355
Query: 623 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVC 679
V ++ R + + P + DI S D ++R+ D E + +++
Sbjct: 356 PVIALSQLSRGVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYDKETENKNIIEII 415
Query: 680 VRKVRNKVVGTIGEAFL-SYNR 700
+ K RN VGT+ AF+ YN+
Sbjct: 416 IAKQRNGPVGTVQLAFVKEYNK 437
>gi|335040362|ref|ZP_08533492.1| replicative DNA helicase [Caldalkalibacillus thermarum TA2.A1]
gi|334179749|gb|EGL82384.1| replicative DNA helicase [Caldalkalibacillus thermarum TA2.A1]
Length = 450
Score = 40.4 bits (93), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 112/273 (41%), Gaps = 28/273 (10%)
Query: 442 HRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 500
H T D GI +G+R L+ L + +L IV P+ GK+ + + N+ AG
Sbjct: 177 HNTKSDLTGIPSGYRDLDRLTSGFQRSDLVIVAARPSVGKTAFALNIAQNVAVRAGETVA 236
Query: 501 LCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN- 559
+ S+E + +++L E N A RM F++ + W T ++
Sbjct: 237 IFSLEMSASQLVQRML-------CAEGNI--DANRMRTGAFKE-EDWEKLTMAIASLSKA 286
Query: 560 ----DSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNEL--DHQRPVSQTETEYVSQMLT 611
D P I AK L+ G+ G+++ Y +L + R Q E +S+ L
Sbjct: 287 KIYIDDTPGINVNQIRAKCRRLKAEEGL-GIILIDYLQLIQGNNRESRQQEISAISRSL- 344
Query: 612 MVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DP 668
K A+ C V ++ R + + P L D+ S D ++R D
Sbjct: 345 --KAMARELDCTVIALSQLSRAVEQRQDKRPMLSDLRESGSIEQDADIVAFLYREDYYDQ 402
Query: 669 EAGPIDRVQVCVRKVRNKVVGTIGEAFL-SYNR 700
+ + +++ + K RN VG + AFL YN+
Sbjct: 403 DTENKNIIEIIIAKQRNGPVGKVELAFLKEYNK 435
>gi|326772811|ref|ZP_08232095.1| replicative DNA helicase [Actinomyces viscosus C505]
gi|326637443|gb|EGE38345.1| replicative DNA helicase [Actinomyces viscosus C505]
Length = 474
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 104/269 (38%), Gaps = 18/269 (6%)
Query: 436 EIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEH 494
EI+A +R +G G+ TG+ L+EL L PG++ IV P GKS + + H
Sbjct: 194 EIEAAQNRDNGALTGVPTGFIELDELTGGLHPGQMIIVAARPAMGKSTLAVDFCRSASIH 253
Query: 495 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 554
G S+E E ++L + E + +SN
Sbjct: 254 HGITSCYFSLEMGRMELMMRILAAESSVDMNKLRGSRQMEDRDWTDVAVAYNPVSNAPLF 313
Query: 555 I-RCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLT 611
I N ++P I+ +KA ++ H + +VID + + V + E VS+
Sbjct: 314 IDDSPNLTMPEIR-----SKALRMKQQHNLGLMVIDYLQLMSSGKRVESRQQE-VSEFSR 367
Query: 612 MVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NR 666
+K A+ V VA R G P + D+ S D +++HR N
Sbjct: 368 SLKLLAKELEIPVIAVAQLNRGPEQRTGNKPQMSDLRESGSLEQDADIIVLLHRPEYYNN 427
Query: 667 DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
+ G D + V K RN TI AF
Sbjct: 428 EERPGEAD---IIVAKHRNGQTRTIPVAF 453
>gi|358012538|ref|ZP_09144348.1| replicative DNA helicase [Acinetobacter sp. P8-3-8]
Length = 481
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 54/276 (19%), Positives = 112/276 (40%), Gaps = 23/276 (8%)
Query: 432 DYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICN 490
D FD+++ + G+ G++TG+ L N+ + G++ IV P+ GK+ + L+ +
Sbjct: 195 DVFDKLNEL-SQMEGNITGLTTGFMELDNKTSGMQAGDMIIVAARPSMGKTTFAMNLVES 253
Query: 491 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 550
+ + ++ SME A +L+ + YG + G W
Sbjct: 254 VLFNCDLPALVFSMEMPADSIAMRLI----------SAYGKVHQGHLRSGKLDGDEWSKV 303
Query: 551 TFSLIRCE--------NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTE 602
T ++++ + + +LP + + A G G ++ Y +L +
Sbjct: 304 TGTILQLQEKHLYIDDSSALPPTELRARARRIAKQHGGKLGCIMVDYLQLMKVPGMGDNR 363
Query: 603 TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 661
+ ++ +K A+ C V ++ R L N + P + D+ S D +
Sbjct: 364 VGEIGEISRSLKALAKEMMCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMF 423
Query: 662 IHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
I+R+ + E+ ++ + K RN +GT+ AF
Sbjct: 424 IYRDEVYNKESKEAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|297617318|ref|YP_003702477.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
gi|297145155|gb|ADI01912.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
Length = 675
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 208 ITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRH----GHEVVIAFPYWRNGKLV 263
I E L P ++ Y R I E L R H G + P+ GK+
Sbjct: 137 IKEAKARLRPELPIVQEYITARGIKYEMLERFEWGYVPHDEDAGQVECLVVPFRVRGKIR 196
Query: 264 NCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVP-DG 322
+ R ++ + K++ + LD +EG+S +IVEGE D L +A V +P
Sbjct: 197 AIRGRAYDGRKGAVKNSRFSLWNLDSLEGKSQAVIVEGESDALRTIQALEACGVDIPVVS 256
Query: 323 APSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRER 382
P + +K E + + YL + D D + LA +G ER
Sbjct: 257 VPGNNFRKEWKREFEGIRTIYL--------------IPQDDDASANFVRSALA-VLGEER 301
Query: 383 CWRVRWP-KKNDV 394
C V P K+ DV
Sbjct: 302 CKVVELPWKRGDV 314
>gi|408790546|ref|ZP_11202164.1| DNA primase [Lactobacillus florum 2F]
gi|408520093|gb|EKK20187.1| DNA primase [Lactobacillus florum 2F]
Length = 609
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 99/256 (38%), Gaps = 57/256 (22%)
Query: 206 REITEDSLELEPLG-----NELRAYFAERLISAETLRRNRVMQKRHGHEVVIAF------ 254
R+I+ + +E LG L+ +F E+ +TLR+ + + E+ F
Sbjct: 147 RQISAEMIETFQLGFAPSERVLQPFFKEQQTDYQTLRKTGLFIENQAGELTDRFVNRLMF 206
Query: 255 --------PYWRNGKLVNCKYRDFNKKFWQEKDTE-----KVFYGLD----DIEGESDII 297
P +G+L+ + + K+ +TE KV Y LD + +I
Sbjct: 207 PIRNPQGAPIGFSGRLL--QQNEQQPKYLNSPETELFNKRKVIYNLDLAKPAVRKTQRLI 264
Query: 298 IVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRI 357
+ EG MD +S +A N V+ S +EEQ +++ K S+I
Sbjct: 265 LFEGFMDVISAYQAEVFNGVA---------SMGTSLTEEQIYEFK---------KVTSQI 306
Query: 358 ILATDGDPPGQALAEELARRVGRERCWRV---RWPKKNDVDHFKDANEVLMYLGPGALKE 414
+ DGD PGQ + ++ + V + P D D F+ GP +E
Sbjct: 307 CVCYDGDQPGQKATNRAIDLLTQQDSFEVNVIQMPNGVDPDEFRRT------AGPKRFRE 360
Query: 415 VVENAELYPIMGLFNF 430
V+ A+ + NF
Sbjct: 361 VISKAQEPALKFKLNF 376
>gi|297616291|ref|YP_003701450.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
gi|297144128|gb|ADI00885.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
Length = 675
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 208 ITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRH----GHEVVIAFPYWRNGKLV 263
I E L P ++ Y R I E L R H G + P+ GK+
Sbjct: 137 IKEAKARLRPELPIVQEYITARGIKYEMLERFEWGYVPHDEDAGQVECLVVPFRVRGKIR 196
Query: 264 NCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVP-DG 322
+ R ++ + K++ + LD +EG+S +IVEGE D L +A V +P
Sbjct: 197 AIRGRAYDGRKGAVKNSRFSLWNLDSLEGKSQAVIVEGESDALRTIQALEACGVDIPVVS 256
Query: 323 APSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRER 382
P + +K E + + YL + D D + LA +G ER
Sbjct: 257 VPGNNFRKEWKREFEGIRTIYL--------------IPQDDDASANFVRSALA-VLGEER 301
Query: 383 CWRVRWP-KKNDV 394
C V P K+ DV
Sbjct: 302 CKVVELPWKRGDV 314
>gi|403389370|ref|ZP_10931427.1| replicative DNA helicase [Clostridium sp. JC122]
Length = 443
Score = 40.0 bits (92), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 112/267 (41%), Gaps = 10/267 (3%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNIN 492
F+EI+ Y+ G+ G+ +G++ L++ G++ ++ P+ GK+ + L
Sbjct: 168 FEEIERIYN-NKGETTGVPSGFKDLDDKTSGFQSGDMVLIAARPSMGKTTFALNLAQYAA 226
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 552
AG + S+E + A KLL + G E+ E + L++
Sbjct: 227 LRAGKSVAIFSLEMSKEQLAYKLLCAEANVDMLKLRTGNLDEK-DWENIARASGPLAD-- 283
Query: 553 SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM 612
+ I ++ + SI + + + HG+ ++ID Y +L ++ + VS++
Sbjct: 284 AKIFIDDTAGISIMEMRSKCRRLKMEHGIDMILID-YLQL-MSGSGGESRQQEVSEISRS 341
Query: 613 VKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPE 669
+K A+ C V ++ R P L D+ S D + ++R+ D E
Sbjct: 342 IKAIAKELKCPVVALSQLSRAPEQRADHRPMLSDLRESGSIEQDADLVMFLYRDEYYDKE 401
Query: 670 AGPIDRVQVCVRKVRNKVVGTIGEAFL 696
+ + + K RN VGT+ A+L
Sbjct: 402 TEDKNIAECIIAKQRNGPVGTVKLAWL 428
>gi|403053483|ref|ZP_10907967.1| replicative DNA helicase [Acinetobacter bereziniae LMG 1003]
gi|445414431|ref|ZP_21433955.1| replicative DNA helicase [Acinetobacter sp. WC-743]
gi|444764378|gb|ELW88692.1| replicative DNA helicase [Acinetobacter sp. WC-743]
Length = 481
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 67/343 (19%), Positives = 129/343 (37%), Gaps = 49/343 (14%)
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMY------------LGPGALKEVVENAELYPI 424
+VG E K DV D E ++ GP A+ VV
Sbjct: 142 KVGNEILQNAYDTKGRDVSEILDLAETNIFSIAEQHNNNAKAQGPKAITSVVA------- 194
Query: 425 MGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEW 483
D FD+++ + G+ G++TG+ L N+ + G++ IV P+ GK+ +
Sbjct: 195 -------DVFDKLNEL-SQLDGNITGLTTGFMELDNKTSGMQAGDMIIVAARPSMGKTTF 246
Query: 484 IDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 543
L+ ++ + ++ SME A +L+ + YG +
Sbjct: 247 AMNLVESVLFNCDLPALVFSMEMPADSIAMRLI----------SAYGKVHQGHLRSGKLD 296
Query: 544 GKAWLSNTFSLIRCE--------NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQ 595
G W T ++++ + + +LP + + A G G ++ Y +L
Sbjct: 297 GDEWSKVTGTILQLQEKHLYIDDSSALPPTEVRARARRIAKQHGGKLGCIMIDYLQLMKV 356
Query: 596 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFIN 654
+ + ++ +K A+ C V ++ R L N + P + D+ S
Sbjct: 357 PGMGDNRVGEIGEISRSLKALAKEMMCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQ 416
Query: 655 KCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
D + I+R+ + E+ ++ + K RN +GT+ AF
Sbjct: 417 DADLIMFIYRDEVYNKESKEAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|451945630|ref|YP_007469759.1| DNA primase [Desulfocapsa sulfexigens DSM 10523]
gi|451908512|gb|AGF80105.1| DNA primase [Desulfocapsa sulfexigens DSM 10523]
Length = 992
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 254 FPYWRNGKLVNCKYRDFNKK--FWQEKDTEK----VFYGLDDIEGESDIIIVEGEMDKLS 307
FP++ NG+ ++ +D KK +Q T++ FY D + ++I+VEGE D LS
Sbjct: 189 FPHFENGRALHFTIKDPEKKRPSYQLPATQRHKKWRFYNQDALFRYDELILVEGENDTLS 248
Query: 308 MEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLW 345
+ ++G + + G S K++ + + K+ YLW
Sbjct: 249 VLDSGVRQVIGMT-GQISEEQIKSLAAHCKSKKHLYLW 285
>gi|83721400|ref|YP_441469.1| phage related protein [Burkholderia thailandensis E264]
gi|257139851|ref|ZP_05588113.1| phage related protein [Burkholderia thailandensis E264]
gi|83655225|gb|ABC39288.1| phage related protein [Burkholderia thailandensis E264]
Length = 342
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 110/272 (40%), Gaps = 30/272 (11%)
Query: 395 DHFKDANEVLMYLGPGALKE----VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 450
D KDAN+ L+ GA +E ++ + L + +++ + A ++ S D
Sbjct: 4 DGAKDANDFLL---SGATQEDFQRCMDAGRTFDPDELKSISEFWSGVKALFYPASDDAHD 60
Query: 451 ISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 509
+ +E + GE+T+ +G GKS ++ ++ + V VR
Sbjct: 61 PFLSFCGRSEPWFEFRQGEITVWSGYNGHGKSLLLNQVLLGLMNQGERACVFSGEMTPVR 120
Query: 510 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN---TFSLIRCENDSLPSIK 566
+ R + K + G +R T E + WL + +F+++ SI+
Sbjct: 121 QGKR--IAKQL----------GGLDRPTPEYLDAMAEWLRDRMWSFAVV-----GTASIE 163
Query: 567 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 626
+L + A R+G+R VID + Q T M M+ +A+ + HV
Sbjct: 164 RLLTVFTYAYKRYGIRHCVIDSLMMTNVQSDGPGAITAQKDAM-RMLANWARANGTHVHL 222
Query: 627 VAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658
VAHPR+ + P D++G+ + DN
Sbjct: 223 VAHPRKSQD-EKHIPGKQDVAGAGVITDAADN 253
>gi|386855013|ref|YP_006262753.1| hypothetical protein DGo_PB0409 [Deinococcus gobiensis I-0]
gi|380002490|gb|AFD27678.1| hypothetical protein DGo_PB0409 [Deinococcus gobiensis I-0]
Length = 343
Score = 39.7 bits (91), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 239 NRVMQKRHGHEV---VIAFPYWRNGKLVNCKYRDF-----NKKFWQEKDTEKVFYGLDDI 290
N + R H + ++ P W G L+ K R+ ++ T YGL ++
Sbjct: 165 NSTVLARRPHRIWEGMVTLPTWHQGALLALKGRNLLGKGEGREMRNLAGTGTAPYGLREL 224
Query: 291 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYL 344
++ VEGE D LS+ +A F VSV G P + K + +Y YL
Sbjct: 225 RDSHAVLAVEGETDTLSIWQA-FEGEVSV-VGIPGATHWKKLQHPALAGRYLYL 276
>gi|356668196|gb|AET35325.1| DNA primase/helicase protein [uncultured virus]
Length = 232
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL +T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVALTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|395226893|ref|ZP_10405301.1| DNA primase, catalytic core [Thiovulum sp. ES]
gi|394444803|gb|EJF05886.1| DNA primase, catalytic core [Thiovulum sp. ES]
Length = 338
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 40/207 (19%)
Query: 186 LVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR 245
LV +NR LK S+ +R + E L P + Y E+ S E + + +
Sbjct: 87 LVKDNRVLDYLK--SRGLEVRSVAEWELGFSPDKYGVIRYLIEKGFSMEEILSSGIAVNT 144
Query: 246 HGHEVV------IAFPYWR-NGKLVNCKYRDFNK---KFWQEKDTE-----KVFYGLDDI 290
G EV + FP G++V+ R F + K+ DT+ +V +GLD
Sbjct: 145 -GREVFDRFYGRVIFPIRDVTGRIVSFSGRIFGEGEPKYLNGPDTKVFKKSEVLFGLDKA 203
Query: 291 EG----ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 346
+ E + IVEG MD + M +AG+ N V+V +S+S+ +++
Sbjct: 204 KSYARKEGFLYIVEGYMDAILMHQAGYKNTVAV---MGTSLSE------------EHIKG 248
Query: 347 CKMYLKQASRIILATDGDPPGQALAEE 373
++K+A IL DGD G AE+
Sbjct: 249 IYRFVKKA---ILIFDGDEAGLRSAEK 272
>gi|356668218|gb|AET35336.1| DNA primase/helicase protein [uncultured virus]
Length = 232
Score = 39.7 bits (91), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 37/208 (17%)
Query: 316 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 375
VS+P+GA S+ ++ K Q W L+ +I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEEVIVMFDMDERGREAVKEIE 58
Query: 376 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 434
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 435 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 488
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELGVLTAGTGVGKTTVIRQIA 162
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLL 516
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|308512513|ref|XP_003118439.1| hypothetical protein CRE_00695 [Caenorhabditis remanei]
gi|308239085|gb|EFO83037.1| hypothetical protein CRE_00695 [Caenorhabditis remanei]
Length = 568
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 98/226 (43%), Gaps = 15/226 (6%)
Query: 449 FGISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507
FG + LN+ L + PGE+T++TG +GK+ ++ ++ G + + CS E
Sbjct: 305 FGQWKRFGVLNKYLGGLRPGEMTVLTGGTGNGKTTFLCEYSLDLFTQ-GVRTLFCSFEMP 363
Query: 508 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 567
++ +L ++ P Y S ++ FE+ S+ +++ E SI
Sbjct: 364 EKKILHWMLVQYAGLPLHRVEYSNSINSW-LDRFERS----SSALTMLDSEEFMEKSINE 418
Query: 568 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV------SQMLTMVKRFAQHHA 621
+ + V G++ +VID L +Q ++ ++ + + + +++ A +
Sbjct: 419 IARAIRIHVENSGIQHVVIDNLQFLINQGMMADEKSSGLDRFHLQDRFVGYMRQLATQNQ 478
Query: 622 CHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD 667
H+ V HPR+ ++ GSA + DN + I R RD
Sbjct: 479 IHITMVVHPRKTDG--DTEIDVQHFGGSARVTQEADNVLAIQRKRD 522
>gi|170699105|ref|ZP_02890160.1| phage-related hypothetical protein [Burkholderia ambifaria
IOP40-10]
gi|170135980|gb|EDT04253.1| phage-related hypothetical protein [Burkholderia ambifaria
IOP40-10]
Length = 321
Score = 39.7 bits (91), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 95/246 (38%), Gaps = 33/246 (13%)
Query: 432 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNI 491
++ +++ + H G ++ W ++ + GE+T+ GV GKS A++ +
Sbjct: 30 EFIEDLVEHVHSPKSVAIGTASPWASVGDSLRFREGEVTLWGGVNGHGKS----AVLGEV 85
Query: 492 NEHA---GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548
HA G + + SME + +L + ++ R T E WL
Sbjct: 86 MLHAMSTGDRACIASMEMRPIATMERLTRQAAAAAVPAPDFIRGFGRWTDERL-----WL 140
Query: 549 SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 608
+ +L +A+ GV +VID + + +V
Sbjct: 141 YAHVGTVERTR--------MLAVARYCRKELGVHHVVIDSLLKCGIAPDDYAGQKNFVDA 192
Query: 609 MLTMVKRFAQHHACHVWFVAHPRQLHNWVGE----PPNLYDISGSAHFINKCDNGIVIHR 664
+ ++ A+ H+ V H R+ GE P+ +D+ G+ + DN +++HR
Sbjct: 193 LCSL----ARDTGVHIHLVHHARK-----GERESVVPDKFDMKGAGEITDLVDNVLIVHR 243
Query: 665 NRDPEA 670
N+ EA
Sbjct: 244 NKSKEA 249
>gi|297544923|ref|YP_003677225.1| regulatory protein DeoR [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296842698|gb|ADH61214.1| regulatory protein DeoR [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 675
Score = 39.7 bits (91), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 208 ITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEV----VIAFPYWRNGKLV 263
I E L P ++ Y R I E L R H E + P+ GK+
Sbjct: 137 IKEAKARLRPELPIVQEYITARGIKYEMLERFEWGYVPHDEETGQVECLVVPFRVRGKIR 196
Query: 264 NCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKL----SMEEAGF-LNCVS 318
+ R ++ + K++ + LD +EG+S +IVEGE D L ++E G + VS
Sbjct: 197 AIRGRAYDGRKGAVKNSRFSLWNLDSLEGKSQAVIVEGESDALRTIQALEACGVDIPVVS 256
Query: 319 VP 320
VP
Sbjct: 257 VP 258
>gi|341874604|gb|EGT30539.1| hypothetical protein CAEBREN_03235 [Caenorhabditis brenneri]
Length = 568
Score = 39.7 bits (91), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 90/208 (43%), Gaps = 14/208 (6%)
Query: 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 525
PGE+T++TG +GK+ ++ ++ G + + CS E ++ +L ++ P
Sbjct: 323 PGEMTVLTGGTGNGKTTFLCEYSLDLFTQ-GVRTLFCSFEMPEKKILHWMLVQYAGLPLH 381
Query: 526 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 585
Y S ++ FE+ S+ +++ E SI + + V G++ +V
Sbjct: 382 RVEYSNSINSW-LDRFERS----SSALTMLDSEEFMEKSINEIARAIRIHVENSGIQHVV 436
Query: 586 IDPYNELDHQRPVSQTETEYV------SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGE 639
ID L +Q ++ ++ + + + +++ A + H+ V HPR+
Sbjct: 437 IDNLQFLINQGMMADEKSSGLDRFHLQDRFVGYMRQLATQNQIHITMVVHPRKTDG--DT 494
Query: 640 PPNLYDISGSAHFINKCDNGIVIHRNRD 667
++ GSA + DN + I R RD
Sbjct: 495 EIDVQHFGGSARVTQEADNVLAIQRKRD 522
>gi|392411785|ref|YP_006448392.1| DNA primase [Desulfomonile tiedjei DSM 6799]
gi|390624921|gb|AFM26128.1| DNA primase [Desulfomonile tiedjei DSM 6799]
Length = 819
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 33/163 (20%)
Query: 266 KYRDF---NKKFWQE--KDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVP 320
K+R F +K W KDT+ V Y L +I + II+ EGE D S+ + L + P
Sbjct: 130 KFRQFRTDSKDGWLPGLKDTQLVLYNLPEIIDANTIIMCEGERDCDSVTQQLGLTATTNP 189
Query: 321 DGA---PSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARR 377
GA VS+ + ++ L N +I+ +D D PG+ A E+A
Sbjct: 190 MGAGKWSKLVSEHRI--------HEPLKN--------KHVIVLSDNDRPGKQHATEVANS 233
Query: 378 V------GRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKE 414
V ++ + WP D+ D ++V+ +LGP KE
Sbjct: 234 VIGFAASVKKVDLKKIWP---DLPEKGDISDVIEFLGPDKAKE 273
>gi|347522197|ref|YP_004779768.1| DNA primase [Lactococcus garvieae ATCC 49156]
gi|385833582|ref|YP_005871357.1| DNA primase [Lactococcus garvieae Lg2]
gi|343180765|dbj|BAK59104.1| DNA primase [Lactococcus garvieae ATCC 49156]
gi|343182735|dbj|BAK61073.1| DNA primase [Lactococcus garvieae Lg2]
Length = 628
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 33/200 (16%)
Query: 238 RNRVM---QKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDD----I 290
+NR+M + +GH V + W+ KY N + D Y LD I
Sbjct: 197 QNRIMFPLKNEYGHVVGFSGRKWQENDTSKAKY--INTSATKIFDKSYELYNLDRAKPVI 254
Query: 291 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMY 350
++ ++EG MD ++ +AG N V+ +++++K+V K
Sbjct: 255 FKTREVYLMEGFMDVIAAYKAGIFNVVAT---MGTALTEKHV---------------KRL 296
Query: 351 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPG 410
K A +L DGD GQ + +G E+ VR P+ D D + +
Sbjct: 297 KKIAKNYVLIYDGDQAGQNAIYKAIDLIGEEKTQIVRVPEGLDPDDYSKKYSL------E 350
Query: 411 ALKEVVENAELYPIMGLFNF 430
+L ++EN+ + P L ++
Sbjct: 351 SLAGLMENSRIQPTEFLIDY 370
>gi|333367786|ref|ZP_08460022.1| replicative DNA helicase DnaB [Psychrobacter sp. 1501(2011)]
gi|332978371|gb|EGK15094.1| replicative DNA helicase DnaB [Psychrobacter sp. 1501(2011)]
Length = 479
Score = 39.3 bits (90), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 108/275 (39%), Gaps = 21/275 (7%)
Query: 432 DYFDEIDAYYHRTSGDEFGISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEWIDALICN 490
+ D++D + G G+ T + LN + + PG+L IV P+ GK+ + L
Sbjct: 190 NVIDQMDELKNNPDG-MIGLRTPFTELNNKTQGLQPGDLIIVAARPSMGKTTFAMNLAEG 248
Query: 491 INEHAGWKFVLCSMENKVREHARKLLEK--HIKKPFF---EANYGGSAERMTVEEFEQGK 545
+ H ++ SME +LL I + + N A MT Q K
Sbjct: 249 VLFHENLPVIVFSMEMPAESIVMRLLSSWGQINQTSLRSAQMNEDEWARMMTAVAHLQDK 308
Query: 546 AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 605
L ++ +LP + + A G G+VI Y +L +S E
Sbjct: 309 -------HLYIDDSTALPPSEVRSRCRRIAKNHDGKIGMVIVDYLQLMKVPSLSGNRVEE 361
Query: 606 VSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664
+S++ +K A+ C V ++ R L N + P + D+ S D I+R
Sbjct: 362 ISEISRSLKALARELNCPVIALSQLNRSLENRPNKRPIMSDLRESGAIEQDADLITFIYR 421
Query: 665 ----NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
N + + + ++ + K RN +GT+ AF
Sbjct: 422 DEVYNENSDLKGV--AEIIIGKQRNGPIGTVRLAF 454
>gi|410492722|ref|YP_006908924.1| primase/helicase [Escherichia phage KBNP135]
gi|404056573|gb|AFR52106.1| primase/helicase [Escherichia phage KBNP135]
Length = 596
Score = 39.3 bits (90), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 127/606 (20%), Positives = 225/606 (37%), Gaps = 95/606 (15%)
Query: 144 CPKC--NGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSK 201
C +C +G D + LF +E+ C R GS + KK
Sbjct: 11 CKECISHGRDKTHNHMILFRNEESGEEWGSCNRC-----GSYEVFEKGTTPTPNEKKELS 65
Query: 202 MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGK 261
+ +REI +D LEL P G EL + +S R + Q FP R+G
Sbjct: 66 PEELREILDDCLEL-PQG-ELTRRLIPKAVSERYECRIGLSQTDGQTPDSYFFPRERDGN 123
Query: 262 LVNCKYRDFN-KKFW-----QEKD-------------TEKVFYGLDDIEGESDIIIVEGE 302
+V + + + KKF+ +E D +K+F D + S ++
Sbjct: 124 IVGYEVKLLDSKKFYYIGSVKEADLFGMAQAQRGDVYNKKLFIFEDPLSCMSGFHVLTAF 183
Query: 303 MDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATD 362
+ +++ A CVS+P GA S S V S +D +L I+L D
Sbjct: 184 TNATNIKPA----CVSLPFGAGSISS---VLSRNRD-----------FLNGFEEIVLCMD 225
Query: 363 GDPPGQALAEELARRVGRERCWRVRWPK--------KNDVDHFKDANEVLMYLGPGALKE 414
D G E+A GR V++ + KDAN++L+ G +E
Sbjct: 226 NDDAG-----EIALTKGRALYPHVKFARIPKGTFTYNGQEKEIKDANDMLL---AGRGQE 277
Query: 415 VVEN----AELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGEL 469
+ N A+ G FD ++ + E+GI W+ LNE+ + + GE+
Sbjct: 278 LFNNLKYSAKRESPAGAVTV---FDCLEDALKKA---EWGIPYPWKTLNEMTFGIRWGEM 331
Query: 470 TIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANY 529
+ G SGK+ L+ + G+ +E KV + + K PF +
Sbjct: 332 VAIGGGVGSGKTLIAHELVAWLCLEHGFNGGGFFLEEKVGMSVKNIAGKSASVPFHRPDV 391
Query: 530 GGSAERMTVEEFEQG-KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDP 588
++ E K +L + F + IK + + V+ + + +++D
Sbjct: 392 EYEESQLRDEALRYADKFFLYDNFG-----QNEWDDIKQCI---RFWVVENQCKFIILDN 443
Query: 589 YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNL----- 643
L S+ TE +S++ + + + + ++H L+ G P+
Sbjct: 444 ITALVSHLTPSEVNTE-ISKIASELAGMCKELDFTAFVLSH---LNAPAGGAPHEEGGQV 499
Query: 644 --YDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRV 701
+GS + C +I RD +A + + +R ++ + G G + Y
Sbjct: 500 KEVQFTGSRSLMRWCQ--CIIGFERDKQADGLGKNLSIIRLLKERNYGQTGVCYTKYINE 557
Query: 702 TGEYMD 707
TG ++
Sbjct: 558 TGRLVE 563
>gi|219684222|ref|ZP_03539166.1| DNA primase [Borrelia garinii PBr]
gi|219672211|gb|EED29264.1| DNA primase [Borrelia garinii PBr]
Length = 593
Score = 39.3 bits (90), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 41/201 (20%)
Query: 190 NRSQSSLKKFSKMKTIREITEDSLELEPL------GNELRAYFAERLISAETLRRNRVMQ 243
N++Q +L K + I + D EL L G EL + + S+E LR++ +
Sbjct: 132 NKNQKALDYVLKSRAISKEVVDLFELGYLPFNIKDGLELHDFLVSKGYSSEILRKSGLFS 191
Query: 244 KRHGHEVVIA----FPYWR-NGKLVNCKYRDFNKK-----------FWQEKDTEKVFY-G 286
K + +++ FP G +V RD + K +++K+ FY G
Sbjct: 192 KTNPKASILSQRLIFPIKDFKGNVVGFGGRDLDGKGSKYINLSETEVFKKKELLYGFYEG 251
Query: 287 LDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 346
L++I+ +I+VEG +D L+ +G VS +S SK+++
Sbjct: 252 LNEIKSTKSVILVEGYIDVLAFFTSGIKRAVST---LGTSFSKEHLA------------- 295
Query: 347 CKMYLKQASRIILATDGDPPG 367
+ + A II + DGD G
Sbjct: 296 --LIQRYADEIIFSFDGDDAG 314
>gi|219685541|ref|ZP_03540358.1| DNA primase [Borrelia garinii Far04]
gi|219672940|gb|EED29962.1| DNA primase [Borrelia garinii Far04]
Length = 593
Score = 38.9 bits (89), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 41/201 (20%)
Query: 190 NRSQSSLKKFSKMKTIREITEDSLELEPL------GNELRAYFAERLISAETLRRNRVMQ 243
N++Q +L K + I + D EL L G EL + + S+E LR++ +
Sbjct: 132 NKNQKALDYVLKSRAISKEVVDLFELGYLPFNIKDGLELHDFLVSKGYSSEILRKSGLFS 191
Query: 244 KRHGHEVVIA----FPYWR-NGKLVNCKYRDFNKK-----------FWQEKDTEKVFY-G 286
K + +++ FP G +V RD + K +++K+ FY G
Sbjct: 192 KTNPKASILSQRLIFPIKDFKGNVVGFGGRDLDGKGSKYINLSETEVFKKKELLYGFYEG 251
Query: 287 LDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 346
L++I+ +I+VEG +D L+ +G VS +S SK+++
Sbjct: 252 LNEIKSTKSVILVEGYIDVLAFFTSGIKRAVST---LGTSFSKEHLA------------- 295
Query: 347 CKMYLKQASRIILATDGDPPG 367
+ + A II + DGD G
Sbjct: 296 --LIQRYADEIIFSFDGDDAG 314
>gi|298674096|ref|YP_003725846.1| TOPRIM domain-containing protein [Methanohalobium evestigatum
Z-7303]
gi|298287084|gb|ADI73050.1| TOPRIM domain protein [Methanohalobium evestigatum Z-7303]
Length = 163
Score = 38.9 bits (89), Expect = 8.8, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 34/157 (21%)
Query: 293 ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLK 352
E DI++VEG+ D S+E+ G DG +VS K++ ++ Y
Sbjct: 34 EGDILVVEGKRDICSLEKLGI-------DGDIETVSNKSLLDFSENVAY----------- 75
Query: 353 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGAL 412
+++ TD D G+ LA +L+ + + D D+ + E L L +
Sbjct: 76 TGKSVVILTDWDRRGEILASKLS-----------EYLQTLDTDYDIEIREQLKSLVKKEI 124
Query: 413 KEV----VENAELYPIMG-LFNFRDYFDEIDAYYHRT 444
K++ +L I G +F D DE + YYHR+
Sbjct: 125 KDIESLYTYVVKLRSITGSTSDFADIADEFEYYYHRS 161
>gi|31615712|pdb|1NUI|A Chain A, Crystal Structure Of The Primase Fragment Of Bacteriophage
T7 Primase- Helicase Protein
gi|31615713|pdb|1NUI|B Chain B, Crystal Structure Of The Primase Fragment Of Bacteriophage
T7 Primase- Helicase Protein
Length = 255
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 14/150 (9%)
Query: 229 RLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-VFYG 286
R IS ET ++ + K G +A +NG +V+ K RD +K F + +G
Sbjct: 84 RGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDALFG 143
Query: 287 LDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 346
G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 144 KHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYE--------- 194
Query: 347 CKMYLKQASRIILATDGDPPGQALAEELAR 376
Y Q +IIL D D G+ EE A+
Sbjct: 195 ---YFDQFEQIILMFDMDEAGRKAVEEAAQ 221
>gi|110835048|ref|YP_693907.1| replicative DNA helicase [Alcanivorax borkumensis SK2]
gi|110648159|emb|CAL17635.1| Replicative DNA helicase [Alcanivorax borkumensis SK2]
Length = 464
Score = 38.9 bits (89), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 111/272 (40%), Gaps = 12/272 (4%)
Query: 430 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALI 488
+ D ID Y +T G+++G+ L+++ L P ++ +V G P+ GK+ + L
Sbjct: 176 LKKAVDRIDELY-KTKSSLTGLTSGFEELDKMTGGLQPADMIVVAGRPSMGKTTFAMNLC 234
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548
N+ + ++ SME ++L + + A G+ E+ L
Sbjct: 235 ENVAIKSNKPVLVFSMEMPAESIVMRML-SSLGRINQGAIRSGNLEKDDWPRITSAIHML 293
Query: 549 SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 608
S I + +L ++ + A G GL++ Y +L Q P + +S+
Sbjct: 294 SEQRFFID-DTPALSPLEMRARARRVARECGGELGLIMVDYLQL-MQVPGVENRVNEISE 351
Query: 609 MLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR--- 664
+ +K A+ C V ++ R L + P + D+ S D + ++R
Sbjct: 352 ISRSLKGIAKELNCPVLALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADLIVFLYRDEV 411
Query: 665 -NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
N+D + ++ + K RN +GT+ AF
Sbjct: 412 YNKDSNERGV--AEIIIGKQRNGPIGTVRLAF 441
>gi|254428918|ref|ZP_05042625.1| replicative DNA helicase [Alcanivorax sp. DG881]
gi|196195087|gb|EDX90046.1| replicative DNA helicase [Alcanivorax sp. DG881]
Length = 464
Score = 38.9 bits (89), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 111/272 (40%), Gaps = 12/272 (4%)
Query: 430 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALI 488
+ D ID Y +T G+++G+ L+++ L P ++ +V G P+ GK+ + L
Sbjct: 176 LKKAVDRIDELY-KTKSSLTGLTSGFEELDKMTGGLQPADMIVVAGRPSMGKTTFAMNLC 234
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548
N+ + ++ SME ++L + + A G+ E+ L
Sbjct: 235 ENVAIKSNKPVLVFSMEMPAESIVMRML-SSLGRINQGAIRSGNLEKDDWPRITSAIHML 293
Query: 549 SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 608
S I + +L ++ + A G GL++ Y +L Q P + +S+
Sbjct: 294 SEQRFFID-DTPALSPLEMRARARRVARECGGELGLIMVDYLQL-MQVPGVENRVNEISE 351
Query: 609 MLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR--- 664
+ +K A+ C V ++ R L + P + D+ S D + ++R
Sbjct: 352 ISRSLKGIAKELNCPVLALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADLIVFLYRDEV 411
Query: 665 -NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 695
N+D + ++ + K RN +GT+ AF
Sbjct: 412 YNKDSNERGV--AEIIIGKQRNGPIGTVRLAF 441
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,804,014,952
Number of Sequences: 23463169
Number of extensions: 515100732
Number of successful extensions: 1653896
Number of sequences better than 100.0: 841
Number of HSP's better than 100.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 682
Number of HSP's that attempted gapping in prelim test: 1650968
Number of HSP's gapped (non-prelim): 2341
length of query: 709
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 559
effective length of database: 8,839,720,017
effective search space: 4941403489503
effective search space used: 4941403489503
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 81 (35.8 bits)