BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005204
(709 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P03692|PRIM_BPT7 DNA primase/helicase OS=Enterobacteria phage T7 GN=4 PE=1 SV=1
Length = 566
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 123/507 (24%), Positives = 199/507 (39%), Gaps = 76/507 (14%)
Query: 226 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-V 283
R IS ET ++ + K G +A +NG +V+ K RD +K F +
Sbjct: 81 LTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDA 140
Query: 284 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 343
+G G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 141 LFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYE------ 194
Query: 344 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 403
Y Q +IIL D D G+ EE A+ + + P KDANE
Sbjct: 195 ------YFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANEC 241
Query: 404 LMYLGPGALKEVVENAELY---PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALN 459
+ + E V NA + ++ + R+ E H +S + G+ +G +N
Sbjct: 242 HLNGHDREIMEQVWNAGPWIPDGVVSALSLRERIRE-----HLSSEESVGLLFSGCTGIN 296
Query: 460 E-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 518
+ GE+ +VT GKS ++ G K L +E V E A L+
Sbjct: 297 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGL 356
Query: 519 HIKKPFFEANYGGSAERMTVE--EFEQGKAWLSNTF---------SLIRCENDSLPSIKW 567
H + +++ S +R +E +F+Q W F S E D L
Sbjct: 357 HNRVRLRQSD---SLKREIIENGKFDQ---WFDELFGNDTFHLYDSFAEAETDRL----- 405
Query: 568 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHAC 622
LAK A +R G+ VI LDH V E + + ++T +K FA+
Sbjct: 406 ---LAKLAYMRSGLGCDVI----ILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGV 458
Query: 623 HVWFVAHPR-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 677
+ + H + + H G P ++ D+ GS D I + RN+ + +
Sbjct: 459 VLVVICHLKNPDKGKAHE-EGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL---- 513
Query: 678 VCVRKVRNKVVGTIGEA-FLSYNRVTG 703
V VR ++ + G G A ++ YN+ TG
Sbjct: 514 VLVRILKCRFTGDTGIAGYMEYNKETG 540
>sp|P20315|PRIM_BPT3 DNA primase/helicase OS=Enterobacteria phage T3 GN=4 PE=3 SV=1
Length = 566
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 113/470 (24%), Positives = 183/470 (38%), Gaps = 67/470 (14%)
Query: 258 RNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNC 316
+NG +V+ K RD +K F + L + G I++ EGE+D L++ E
Sbjct: 113 QNGSIVSQKVRDKDKNFKTTGSHKSDALFLKHLWSGGKKIVVTEGEIDALTVMELQDCKY 172
Query: 317 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 376
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 173 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDDAGRKAVEEAAQ 220
Query: 377 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 436
+ + P KDANE + A+ E V NA + G+ + D
Sbjct: 221 VLPAGKVRVAVLP-------CKDANECHIMGEDKAILEQVWNANPWVPDGVVSALSLKDR 273
Query: 437 IDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEH 494
+ TS D G+ G + LN+ GE+ +VT GKS ++ +
Sbjct: 274 VKEAM--TSEDAVGLLFDGCQGLNDRTLGARGGEVVMVTSGSGMGKSTFVRQQALAWGKR 331
Query: 495 AGWKFVLCSMENKVREHARKLL----------EKHIKKPFFEANYGGSAERMTVEEFEQG 544
G + L +E V + + ++ +KK E G + E F
Sbjct: 332 MGKRVGLAMLEESVEDTIQDMMGLNNKVRLRQSDEVKKAIAE---DGRFDEWYDELFGDD 388
Query: 545 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT--- 601
L ++F+ E D L LAK A +R G+ VI LDH V
Sbjct: 389 TFHLYDSFA--EAEADRL--------LAKLAYMRTGLGCDVI----VLDHISIVVSASEE 434
Query: 602 --ETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSAHFIN 654
E + + +++T +K FA+ + + H + + H G ++ D+ GS
Sbjct: 435 SDERKMIDRLMTKLKGFAKSTGVVLVVICHLKNPEKGKAHE-EGRAVSITDLRGSGALRQ 493
Query: 655 KCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 703
D I + RN+ + + V VR ++ + G G A ++ YNR TG
Sbjct: 494 LSDTIIALERNQQGDMPNL----VLVRLLKCRFTGDTGIAGYMEYNRETG 539
>sp|Q96RR1|PEO1_HUMAN Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1
Length = 684
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 123/575 (21%), Positives = 222/575 (38%), Gaps = 80/575 (13%)
Query: 156 SLSLFLDEDGFSAVWMCFRAKCGW---KGSTSALVDNNRSQSSLKK---FSKMKTIREIT 209
S SLF+D+ + M A+ W + S D R L K F + +R I
Sbjct: 99 SFSLFIDKTTGHFLCMTSLAEGSWEDFQASVEGRGDGAREGFLLSKAPEFEDSEEVRRIW 158
Query: 210 EDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGHEVVIAFPYWRNG---- 260
++ L L ++ A+ + ++ +TL+R V R +V FP++ G
Sbjct: 159 NRAIPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPARSLV--FPWFSPGGSGL 216
Query: 261 ---KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG-ESDIIIVEGEMDKLSMEEAG 312
KL+ K + + + +GL I ++++++ E+D L++ ++
Sbjct: 217 RGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLISRRDAEVVLTSRELDSLALNQST 276
Query: 313 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 372
L +++P G + + +P YL+Q RI+ D A+
Sbjct: 277 GLPTLTLPRGT-TCLPPALLP----------------YLEQFRRIVFWLGDDLRSWEAAK 319
Query: 373 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRD 432
AR++ +RC+ VR P + N G L ++ A + +FR
Sbjct: 320 LFARKLNPKRCFLVR-PGDQQPRPLEALN------GGFNLSRILRTALPAWHKSIVSFRQ 372
Query: 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYNVL----PGELTIVTGVPNSGKSEWIDALI 488
+E+ S E W +L +L GELT+ TG SGK+ +I
Sbjct: 373 LREEV---LGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYA 429
Query: 489 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548
++ G + S E AR +L + AE ++ ++ W
Sbjct: 430 LDLCSQ-GVNTLWGSFEISNVRLARVMLTQF-------------AEGRLEDQLDKYDHWA 475
Query: 549 S--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 606
L SI+ V+D + AV + + ++ID + +S
Sbjct: 476 DRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQ 535
Query: 607 SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666
++ + ++FA + CHV V HPR+ + + I GSA + DN ++I ++R
Sbjct: 536 DYIIGVFRKFATDNNCHVTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDR 592
Query: 667 DPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 700
GP R +QV +N+ G +G L +N+
Sbjct: 593 KLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 623
>sp|Q8CIW5|PEO1_MOUSE Twinkle protein, mitochondrial OS=Mus musculus GN=Peo1 PE=2 SV=1
Length = 685
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 110/497 (22%), Positives = 196/497 (39%), Gaps = 69/497 (13%)
Query: 223 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYRDFNKKFW 275
R F ++ +TLRR V R +V FP++ G KL+ + ++ ++
Sbjct: 178 RVMFGLTKVTDDTLRRFSVRYLRSARSLV--FPWFTPGSSGLRGLKLLGAEGQENGVQYV 235
Query: 276 QEKDTEKVFY----GLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 330
+ Y GL I ++++++ E+D L++ ++ L +S+P G +
Sbjct: 236 ETTIPRPGVYHNLFGLPLISRRDTEVVVTSRELDSLALSQSTGLPTLSLPRGT-VCLPPA 294
Query: 331 NVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK 390
+P YL+Q RI+ D A+ AR++ +RC VR P
Sbjct: 295 LLP----------------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVR-PG 337
Query: 391 KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 450
+ N+ L +L ++ A + +FR +E+ S E
Sbjct: 338 NQQPRPLEALNQGL------SLPRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQA 388
Query: 451 ISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 389 AGVRWSRFPDLNRLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEI 447
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS--NTFSLIRCENDSLPS 564
AR +L + + R+ E+ ++ + W L S
Sbjct: 448 SNVRLARVMLTQF------------AVTRLE-EQLDKYEEWADRFEDLPLYFMTFHGQQS 494
Query: 565 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624
I+ V+D + AV + V +VID + +S ++ ++FA ++CHV
Sbjct: 495 IRSVIDTMQHAVYVYDVCHVVIDNLQFMMGHEQLSSDRIAAQDYIVGAFRKFATDNSCHV 554
Query: 625 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKV 683
V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 555 TLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS---- 607
Query: 684 RNKVVGTIGEAFLSYNR 700
+N+ G +G L +N+
Sbjct: 608 KNRFDGDVGVFPLEFNK 624
>sp|Q5ZIW1|PEO1_CHICK Twinkle protein, mitochondrial OS=Gallus gallus GN=PEO1 PE=2 SV=1
Length = 669
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 104/499 (20%), Positives = 198/499 (39%), Gaps = 69/499 (13%)
Query: 223 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW-------RNGKLVNCKYRDFNKKFW 275
+A F ++ TL+R V R +V FP++ R KL+ + R +
Sbjct: 183 KAAFGIAPLADGTLKRFGVRYLRAAKALV--FPWFAPRDAALRGLKLLVAEQRGDAVSYT 240
Query: 276 QEK----DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 330
+E D + +GL I ++++++ E+D L++ +A + C+++P GA + +
Sbjct: 241 EETLPRFDAYRNLFGLPLIGRRDAEVVLTGSELDALALHQATGVPCLALPRGA-TILPPA 299
Query: 331 NVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK 390
+P YL+Q R+ L D ++ AR++ +RC V+ P
Sbjct: 300 LLP----------------YLEQFRRVTLWLGDDLRSWEASKLFARKLNPKRCSLVQ-PG 342
Query: 391 KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 450
+ N L L +++ A + +FR +E+ + + E
Sbjct: 343 DLQPRPLEALNRGL------NLTKILRAALPAGHKAIVSFRQLREEV---FGELANSEQV 393
Query: 451 ISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506
W EL +L G ELT+ TG SGK+ +I ++ +C++
Sbjct: 394 AGVKWARFPELNKLLKGHRRGELTVFTGPTGSGKTTFISEYALDLCTQG-----VCTLWG 448
Query: 507 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS--NTFSLIRCENDSLPS 564
+ +L + + + A R ++ E W L +
Sbjct: 449 SFEINNIRLAKIMLTQ---------FATRRLEDQLELYDEWADRFEDLPLYFMTFHGQQN 499
Query: 565 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624
IK VLD + AV + + +V+D + +S ++ ++FA + CH+
Sbjct: 500 IKTVLDTMQHAVYMYDITHVVVDNLQFMMGHEQLSADRLAAQDFIVGAFRKFATDNTCHI 559
Query: 625 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKV 683
V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 560 TLVIHPRKEDD--EKELQTASIFGSAKASQEADN-VLILQDRKLTTGPGKRYLQVS---- 612
Query: 684 RNKVVGTIGEAFLSYNRVT 702
+N+ G +G L +++ +
Sbjct: 613 KNRFDGDVGVFPLEFSKAS 631
>sp|O84799|PRIM_CHLTR DNA primase OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=dnaG
PE=3 SV=1
Length = 595
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 70/176 (39%), Gaps = 46/176 (26%)
Query: 258 RNGKLVNCKYRDFNKKFWQEKDTEKVFYGLD----DIEGESDIIIVEGEMDKLSMEEAGF 313
R GK +N KK +V YGL I E +I+VEG+ D L M + GF
Sbjct: 218 RGGKYINSPETILFKK-------SRVLYGLQFSRKRIAKERRVILVEGQADCLQMIDFGF 270
Query: 314 LNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEE 373
NC G +S ++ +V ++ S+ L DGD G E+
Sbjct: 271 -NCTLAAQG--TSFTETHVH--------------ELVKLGVSKAYLLFDGDAAG----EK 309
Query: 374 LARRVGRERCWRV-------RWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422
+ RVG + C R P D D F LM GP L+E+++ E Y
Sbjct: 310 ASLRVG-DLCQAAGITAIVCRLPSGQDPDSF------LMQRGPEELRELLDRGEDY 358
>sp|P71481|PRIM_LEGPN DNA primase OS=Legionella pneumophila GN=dnaG PE=3 SV=1
Length = 576
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 55/249 (22%)
Query: 144 CPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMK 203
CP+ G+ + SL+L+ + S V ++ K + G + +D R++ + +K
Sbjct: 96 CPRDGTGEKHKSSLNLY---NLMSEVSQYYQKKLKYNGQVA--IDYLRNRGLSGEIAKRY 150
Query: 204 TIREITED--SLELEPLGNELRAYFAERLISAETLR-----RNRVMQKRHGHEVVIAFP- 255
+ E +LE N+ LI ++ + RNR+M FP
Sbjct: 151 HLGYAPEGWHNLEKAFPNNQRELLSTGMLIKSDEGKIYDRYRNRIM-----------FPI 199
Query: 256 YWRNGKLVNCKYRDFNK----KFWQEKDT-----EKVFYGLDDIEGES----DIIIVEGE 302
+ RNG+++ R +K K+ +T + YGL + + II+VEG
Sbjct: 200 HDRNGRVIGFGGRVLDKDQKPKYLNSPETVLFQKSRELYGLHQVLSQQKNPDSIIVVEGY 259
Query: 303 MDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATD 362
MD +++ + G N V+ A S+ ++ ++ K +I D
Sbjct: 260 MDVIALAQHGIFNVVATLGTATST------------------FHIQLLAKHTKHLIFCFD 301
Query: 363 GDPPGQALA 371
GD G+ A
Sbjct: 302 GDAAGKQAA 310
>sp|P33655|PRIM_CLOAB DNA primase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM
792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=dnaG PE=3
SV=1
Length = 596
Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 22/124 (17%)
Query: 296 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 355
IIIVEG MD +S+ + G N V+ A TK Q K+ + AS
Sbjct: 257 IIIVEGYMDCISLHQYGINNVVASLGTAL--------------TKDQ----AKLLKRYAS 298
Query: 356 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEV 415
+++++ D D GQA A + RE + ++ K + KD +E + G A +
Sbjct: 299 KVVISYDADTAGQA-ATLRGFDILREAGFDIKIIK---IPDGKDPDEFVRKNGKEAFMRL 354
Query: 416 VENA 419
VENA
Sbjct: 355 VENA 358
>sp|P49519|DNAB_ODOSI Probable replicative DNA helicase OS=Odontella sinensis GN=dnaB
PE=3 SV=1
Length = 455
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 126/316 (39%), Gaps = 37/316 (11%)
Query: 406 YLGPGALKEVVENAE--LYPIMGLFNFRDYFDEIDAY--------YHRTSGDEFGISTGW 455
Y+ +L+E++ + E ++ + +D F +D + Y + G+S+G+
Sbjct: 137 YITNISLEEILISLEKQMFSLTNEIKNQDVFSSVDLFSQILLELKYKSSKPVLAGLSSGF 196
Query: 456 RALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARK 514
L+ L +L I+ G P+ GK+ + + NI + + S+E + A +
Sbjct: 197 YDLDSLTQGFQKSDLIIIAGRPSMGKTAFCLNIATNIVKKYKLPILFFSLEMSKEQLAYR 256
Query: 515 LLE-KHIKKPFFEANYGGSAERMTVEEFEQGKAWLS-----NTFSLIRCENDSLP--SIK 566
LL + + P N G + K WL S + D P SI+
Sbjct: 257 LLSAEALINPMRLRN--GHLNK---------KDWLKLHRIIKNLSSLPFFIDDTPNLSIQ 305
Query: 567 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV-SQTETEYVSQMLTMVKRFAQHHACHVW 625
+ K + GLV+ Y +L + S + +SQ+ +K A+ V
Sbjct: 306 AIRSKVKKLLFEQNTIGLVVIDYLQLMQSSTLKSSNRVQELSQITRSLKNIAREFNVPVI 365
Query: 626 FVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR-----DPEAGPIDRVQVC 679
++ R + N + + P L D+ S D ++++R++ + +D ++
Sbjct: 366 ALSQLSRNVENRIIKRPILSDLRESGSIEQDADLVLMLYRDQYYNSNNENDEQLDITELI 425
Query: 680 VRKVRNKVVGTIGEAF 695
+ K RN +GTI F
Sbjct: 426 LAKQRNGPIGTIQLKF 441
>sp|Q1ILY2|UVRC_KORVE UvrABC system protein C OS=Koribacter versatilis (strain Ellin345)
GN=uvrC PE=3 SV=1
Length = 610
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 29/166 (17%)
Query: 178 GWKGSTSALVDNNRSQSSLKKFSKMK----TIREITEDSLELEPLGNELRAYFAERLISA 233
G K S LV N QS ++F M+ ++ + +D+LEL L N + + + A
Sbjct: 351 GDKRSLIDLVAQNAKQSYDQRFRVMRPQTDVLKSVLQDTLELPELPNRIECFDISHIQGA 410
Query: 234 ETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKD---------TEKVF 284
ET V + W +GK+ YR F K Q D T +
Sbjct: 411 ET---------------VASMVVWEDGKMKKSDYRKFIIKTVQGVDDFASMREVVTRRYK 455
Query: 285 YGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 330
+++ + +++++G + +L AG L + + + +S++K+
Sbjct: 456 RIVEENQPMPSLVLIDGGVGQLHA-AAGALEAIGITNQPLASIAKR 500
>sp|Q9PLC9|PRIM_CHLMU DNA primase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=dnaG
PE=3 SV=1
Length = 600
Score = 37.7 bits (86), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 39/152 (25%)
Query: 282 KVFYGLD----DIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 337
+V YGL I E +I+VEG+ D L M + GF NC G +S ++ +V
Sbjct: 237 RVLYGLQFSRKRIAKEKRVILVEGQADCLQMIDFGF-NCTLAAQG--TSFTETHVK---- 289
Query: 338 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRV-------RWPK 390
++ S+ L DGD G E+ + RVG + C R P
Sbjct: 290 ----------ELVKLGVSKAYLLFDGDAAG----EKASLRVG-DLCQVAGIAVIVCRLPS 334
Query: 391 KNDVDHFKDANEVLMYLGPGALKEVVENAELY 422
D D F LM GP L+E+++ E Y
Sbjct: 335 GQDPDSF------LMQRGPEELRELLDRGEDY 360
>sp|P71715|DNAB_MYCTU Replicative DNA helicase OS=Mycobacterium tuberculosis GN=dnaB PE=1
SV=2
Length = 874
Score = 37.4 bits (85), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-IDAL-ICN 490
DEIDA + G G++TG+ L+E+ N L PG++ IV P GKS +D + C+
Sbjct: 186 MDEIDAIAS-SGGLARGVATGFTELDEVTNGLHPGQMVIVAARPGVGKSTLGLDFMRSCS 244
Query: 491 INEHAGWKFVLCSMENKVREHARKLLEKHIK 521
I V+ S+E E +LL K
Sbjct: 245 IRHRMA--SVIFSLEMSKSEIVMRLLSAEAK 273
>sp|P59966|DNAB_MYCBO Replicative DNA helicase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=dnaB PE=3 SV=1
Length = 874
Score = 37.4 bits (85), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 434 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-IDAL-ICN 490
DEIDA + G G++TG+ L+E+ N L PG++ IV P GKS +D + C+
Sbjct: 186 MDEIDAIAS-SGGLARGVATGFTELDEVTNGLHPGQMVIVAARPGVGKSTLGLDFMRSCS 244
Query: 491 INEHAGWKFVLCSMENKVREHARKLLEKHIK 521
I V+ S+E E +LL K
Sbjct: 245 IRHRMA--SVIFSLEMSKSEIVMRLLSAEAK 273
>sp|Q6NZN0|RBM26_MOUSE RNA-binding protein 26 OS=Mus musculus GN=Rbm26 PE=1 SV=2
Length = 1012
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 535 RMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 587
+M +E FE K+WLS T I C+ D K+VL L K ++ L ID
Sbjct: 4 KMIIENFEALKSWLSKTLEPI-CDADPSALAKYVLALVKKDKSEKELKALCID 55
>sp|Q5T8P6|RBM26_HUMAN RNA-binding protein 26 OS=Homo sapiens GN=RBM26 PE=1 SV=3
Length = 1007
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 535 RMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 587
+M +E FE K+WLS T I C+ D K+VL L K ++ L ID
Sbjct: 4 KMIIENFEALKSWLSKTLEPI-CDADPSALAKYVLALVKKDKSEKELKALCID 55
>sp|C1F4W9|UVRC_ACIC5 UvrABC system protein C OS=Acidobacterium capsulatum (strain ATCC
51196 / DSM 11244 / JCM 7670) GN=uvrC PE=3 SV=1
Length = 645
Score = 35.4 bits (80), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 36/196 (18%)
Query: 124 LKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGST 183
LKQ+ ++ P V + P N D E +L+ L E + + + G K S
Sbjct: 326 LKQIYIE----QPYVPRSIYVP-VNFADRE--ALAGLLAEQTHHRIELAVPQR-GDKRSL 377
Query: 184 SALVDNNRSQSSLKKFSKM----KTIREITEDSLELEPLGNELRAYFAERLISAETLRRN 239
L N QS ++F M K I+E +D+L LE L + + + AET
Sbjct: 378 VDLAGQNARQSYEQRFRVMQPNQKAIQEALQDALMLEELPRRIECFDISHIQGAET---- 433
Query: 240 RVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKF---------WQEKDTEKVFYGLDDI 290
V + W NG + YR F K +E T + +++
Sbjct: 434 -----------VASMVVWENGAMKKADYRKFQIKTVSGVDDFASMREVLTRRYRRVIEEK 482
Query: 291 EGESDIIIVEGEMDKL 306
+ D+I+++G + +L
Sbjct: 483 QAMPDVILIDGGIGQL 498
>sp|Q9PM37|PRIM_CAMJE DNA primase OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=dnaG PE=3 SV=1
Length = 605
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 279 DTEKVFYGL----DDIEGESDIIIVEGEMDKLSMEEAGFLNCVSV 319
D ++FY ++I + +II+ EG MD ++ +AGF N V+V
Sbjct: 229 DKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAV 273
>sp|Q04505|PRIM_LACLA DNA primase OS=Lactococcus lactis subsp. lactis (strain IL1403)
GN=dnaG PE=3 SV=3
Length = 637
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 80/200 (40%), Gaps = 35/200 (17%)
Query: 239 NRVM---QKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDD----IE 291
NR+M +GH + + W+ KY + + +K E + LD I
Sbjct: 197 NRIMFPITNEYGHTIGFSGRKWQENDDSKAKYINTSATTIFDKSYE--LWNLDKAKPTIS 254
Query: 292 GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 351
+ ++ ++EG MD ++ +AG N V+ +++++K++ L
Sbjct: 255 KQHEVYLMEGFMDVIAAYKAGINNVVA---SMGTALTEKHIRR----------------L 295
Query: 352 KQ-ASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPG 410
KQ A + +L DGD GQ + +G V+ P+ D D + G
Sbjct: 296 KQMAKKFVLVYDGDSAGQNAIYKAIDLIGESAVQIVKVPEGLDPDEYSKN------YGLK 349
Query: 411 ALKEVVENAELYPIMGLFNF 430
L ++E + PI L ++
Sbjct: 350 GLSALMETGRIQPIEFLIDY 369
>sp|A2BK98|NDK_HYPBU Nucleoside diphosphate kinase OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=ndk PE=3 SV=1
Length = 142
Score = 34.7 bits (78), Expect = 2.5, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 524
+P E T V P+ K + +I E G K M+ RE A KL E H KPF
Sbjct: 1 MPVERTFVMIKPDGVKRGLVGEIIARF-ERKGLKIKALKMKWLTREEAEKLYEVHRGKPF 59
Query: 525 FE 526
FE
Sbjct: 60 FE 61
>sp|Q8TV10|NDK_METKA Nucleoside diphosphate kinase OS=Methanopyrus kandleri (strain AV19
/ DSM 6324 / JCM 9639 / NBRC 100938) GN=ndk PE=3 SV=1
Length = 154
Score = 33.9 bits (76), Expect = 4.5, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 18/34 (52%)
Query: 493 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 526
E G K V M RE A KL E+H KPFFE
Sbjct: 29 ERKGLKIVALEMRQLDRETAEKLYEEHRDKPFFE 62
>sp|Q10935|SRA33_CAEEL Serpentine receptor class alpha-33 OS=Caenorhabditis elegans
GN=sra-33 PE=3 SV=2
Length = 327
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 17 SRLHKLSYLFMDSSTLRTAAAST-RLFTINSSPCFSSSPRRLITTSLAFKRINNNNY 72
S++ + S F+D+S + + A + +F ++S F+ S RL+ T L F I+N +Y
Sbjct: 15 SQVFRFSVYFIDTSCIISMAVTVLAIFQLHSKQVFNPSTTRLLITDLVFINIHNLSY 71
>sp|Q66CI3|MSBA_YERPS Lipid A export ATP-binding/permease protein MsbA OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=msbA
PE=3 SV=1
Length = 582
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 181 GSTSALVDNNRSQSSLKKFSKMKT-IREITEDSLELEPLGNELRAYFAERLISAETLRRN 239
G T ALV RS S + + T +++E S+ L+ G++LR Y L RN
Sbjct: 369 GKTVALV--GRSGSGKSTIANLLTRFYDVSEGSILLD--GHDLRDYRLGAL-------RN 417
Query: 240 RVM---QKRHGHEVVIA--FPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGES 294
+V Q H +A Y RN + + + + + K+ +GLD + GE+
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARNEQYSRAEIEEAARMAYAMDFINKMEHGLDTVIGEN 477
Query: 295 DIIIVEGEMDKLSMEEAGFLNC-VSVPDGAPSSVSKKN 331
I++ G+ ++++ A NC + + D A S++ ++
Sbjct: 478 GIMLSGGQRQRIAIARALLRNCPILILDEATSALDTES 515
>sp|Q1CGH0|MSBA_YERPN Lipid A export ATP-binding/permease protein MsbA OS=Yersinia pestis
bv. Antiqua (strain Nepal516) GN=msbA PE=3 SV=1
Length = 582
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 181 GSTSALVDNNRSQSSLKKFSKMKT-IREITEDSLELEPLGNELRAYFAERLISAETLRRN 239
G T ALV RS S + + T +++E S+ L+ G++LR Y L RN
Sbjct: 369 GKTVALV--GRSGSGKSTIANLLTRFYDVSEGSILLD--GHDLRDYRLGAL-------RN 417
Query: 240 RVM---QKRHGHEVVIA--FPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGES 294
+V Q H +A Y RN + + + + + K+ +GLD + GE+
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARNEQYSRAEIEEAARMAYAMDFINKMEHGLDTVIGEN 477
Query: 295 DIIIVEGEMDKLSMEEAGFLNC-VSVPDGAPSSVSKKN 331
I++ G+ ++++ A NC + + D A S++ ++
Sbjct: 478 GIMLSGGQRQRIAIARALLRNCPILILDEATSALDTES 515
>sp|Q8ZGA9|MSBA_YERPE Lipid A export ATP-binding/permease protein MsbA OS=Yersinia pestis
GN=msbA PE=3 SV=1
Length = 582
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 181 GSTSALVDNNRSQSSLKKFSKMKT-IREITEDSLELEPLGNELRAYFAERLISAETLRRN 239
G T ALV RS S + + T +++E S+ L+ G++LR Y L RN
Sbjct: 369 GKTVALV--GRSGSGKSTIANLLTRFYDVSEGSILLD--GHDLRDYRLGAL-------RN 417
Query: 240 RVM---QKRHGHEVVIA--FPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGES 294
+V Q H +A Y RN + + + + + K+ +GLD + GE+
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARNEQYSRAEIEEAARMAYAMDFINKMEHGLDTVIGEN 477
Query: 295 DIIIVEGEMDKLSMEEAGFLNC-VSVPDGAPSSVSKKN 331
I++ G+ ++++ A NC + + D A S++ ++
Sbjct: 478 GIMLSGGQRQRIAIARALLRNCPILILDEATSALDTES 515
>sp|Q1CA68|MSBA_YERPA Lipid A export ATP-binding/permease protein MsbA OS=Yersinia pestis
bv. Antiqua (strain Antiqua) GN=msbA PE=3 SV=1
Length = 582
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 181 GSTSALVDNNRSQSSLKKFSKMKT-IREITEDSLELEPLGNELRAYFAERLISAETLRRN 239
G T ALV RS S + + T +++E S+ L+ G++LR Y L RN
Sbjct: 369 GKTVALV--GRSGSGKSTIANLLTRFYDVSEGSILLD--GHDLRDYRLGAL-------RN 417
Query: 240 RVM---QKRHGHEVVIA--FPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGES 294
+V Q H +A Y RN + + + + + K+ +GLD + GE+
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARNEQYSRAEIEEAARMAYAMDFINKMEHGLDTVIGEN 477
Query: 295 DIIIVEGEMDKLSMEEAGFLNC-VSVPDGAPSSVSKKN 331
I++ G+ ++++ A NC + + D A S++ ++
Sbjct: 478 GIMLSGGQRQRIAIARALLRNCPILILDEATSALDTES 515
>sp|A8MA86|Y169_CALMQ UPF0095 protein Cmaq_0169 OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=Cmaq_0169
PE=3 SV=1
Length = 452
Score = 33.1 bits (74), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 76/171 (44%), Gaps = 25/171 (14%)
Query: 268 RDFNKKFWQE-KDTEKVFYGLD------DIEGESDIIIVEGEMDKLSMEEAGFLNCVSVP 320
++ KF E K E V YG + D+E +IIVEG D +++ + G+ N +++
Sbjct: 139 KELMDKFLGEVKQGEVVSYGPEGLPAGPDVESSDTVIIVEGRADVVNLIKHGYRNVIAI- 197
Query: 321 DGAPSSVSKKNVPSEEQDTKYQYL---WNCKMYLKQASRIILATDGD-----PPGQALAE 372
+GA + K + + T + +M L++ ++ D D PPG+ + +
Sbjct: 198 EGASGGIPKTVIELSRRKTTIAFTDGDRGGEMILRELLKV---ADIDYIARAPPGKEVEQ 254
Query: 373 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYP 423
A+ + + R + P + ++ + ++ K+ +E A++ P
Sbjct: 255 LTAKEIA--KALRNKIPVEEYINQLSKKDRQIIEES----KKQIEQAQVQP 299
>sp|P37469|DNAC_BACSU Replicative DNA helicase OS=Bacillus subtilis (strain 168) GN=dnaC
PE=1 SV=2
Length = 454
Score = 33.1 bits (74), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 120/307 (39%), Gaps = 29/307 (9%)
Query: 411 ALKEVVENAELYPIMGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNELYNVLP 466
A K ++E A+ N +D +D I+ ++R GD GI TG+ L+ +
Sbjct: 143 AEKTIMEVAQRKNTSAFQNIKDVLVQTYDNIEQLHNR-KGDITGIPTGFTELDRMTAGFQ 201
Query: 467 -GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 525
+L IV P+ GK+ + + N+ + S+E + ++L
Sbjct: 202 RNDLIIVAARPSVGKTAFALNIAQNVATKTDESVAIFSLEMGAEQLVMRML-------CA 254
Query: 526 EANYGGSAER---MTVEE---FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH 579
E N R +T E+ LSN+ I D P I+ AK L+
Sbjct: 255 EGNINAQNLRTGNLTEEDWGKLTMAMGSLSNSGIYI----DDTPGIRVSEIRAKCRRLKQ 310
Query: 580 --GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNW 636
G+ ++ID + + VS++ +K A+ V ++ R +
Sbjct: 311 ESGLGMILIDYLQLIQGSGRSKDNRQQEVSEISRELKSIARELQVPVIALSQLSRGVEQR 370
Query: 637 VGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEA 694
+ P + DI S D ++R+ D E + +++ + K RN VGT+ A
Sbjct: 371 QDKRPMMSDIRESGSIEQDADIVAFLYRDDYYDKETENKNIIEIIIAKQRNGPVGTVSLA 430
Query: 695 FL-SYNR 700
F+ YN+
Sbjct: 431 FVKEYNK 437
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 279,962,534
Number of Sequences: 539616
Number of extensions: 12380875
Number of successful extensions: 73061
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 65485
Number of HSP's gapped (non-prelim): 6833
length of query: 709
length of database: 191,569,459
effective HSP length: 125
effective length of query: 584
effective length of database: 124,117,459
effective search space: 72484596056
effective search space used: 72484596056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)