Query 005204
Match_columns 709
No_of_seqs 326 out of 2999
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 19:45:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08006 replicative DNA helic 100.0 2E-41 4.3E-46 375.7 27.9 266 433-708 189-463 (471)
2 KOG2373 Predicted mitochondria 100.0 4.9E-42 1.1E-46 345.4 19.4 432 228-706 39-494 (514)
3 PRK08840 replicative DNA helic 100.0 5.5E-41 1.2E-45 371.5 27.9 266 433-708 182-456 (464)
4 PRK05636 replicative DNA helic 100.0 1E-40 2.2E-45 372.1 27.2 264 434-708 232-502 (505)
5 PRK07004 replicative DNA helic 100.0 1.3E-40 2.8E-45 369.5 27.2 253 446-708 191-451 (460)
6 PF03796 DnaB_C: DnaB-like hel 100.0 1E-40 2.3E-45 346.6 24.1 249 450-708 1-257 (259)
7 PRK08760 replicative DNA helic 100.0 1.8E-40 3.8E-45 369.5 27.2 266 432-708 194-467 (476)
8 PRK05595 replicative DNA helic 100.0 5E-40 1.1E-44 365.7 27.5 266 432-708 166-438 (444)
9 PRK06321 replicative DNA helic 100.0 5.5E-40 1.2E-44 363.8 27.5 253 446-708 204-465 (472)
10 COG0305 DnaB Replicative DNA h 100.0 4E-40 8.6E-45 353.5 25.2 266 431-708 161-433 (435)
11 PRK06904 replicative DNA helic 100.0 1.5E-39 3.2E-44 361.3 27.4 254 446-708 199-462 (472)
12 PRK06749 replicative DNA helic 100.0 1.7E-39 3.7E-44 357.0 27.3 254 445-707 163-426 (428)
13 PRK08506 replicative DNA helic 100.0 1.6E-39 3.6E-44 362.2 27.3 252 446-708 170-451 (472)
14 PRK09165 replicative DNA helic 100.0 2.1E-39 4.6E-44 363.1 27.2 254 445-708 194-487 (497)
15 TIGR00665 DnaB replicative DNA 100.0 4.4E-39 9.6E-44 358.7 28.2 265 433-708 161-432 (434)
16 PHA02542 41 41 helicase; Provi 100.0 4.7E-39 1E-43 356.0 27.7 267 430-708 151-428 (473)
17 PRK05748 replicative DNA helic 100.0 1.4E-38 3.1E-43 355.0 27.3 265 433-708 169-442 (448)
18 TIGR03600 phage_DnaB phage rep 100.0 5.6E-38 1.2E-42 348.2 26.2 249 434-691 161-417 (421)
19 TIGR01391 dnaG DNA primase, ca 100.0 3.7E-36 8E-41 330.1 19.3 268 118-422 14-364 (415)
20 PRK05667 dnaG DNA primase; Val 100.0 6.7E-36 1.5E-40 338.1 19.4 267 118-422 16-363 (580)
21 cd01122 GP4d_helicase GP4d_hel 100.0 2.9E-33 6.4E-38 292.9 28.1 253 448-707 10-270 (271)
22 cd00984 DnaB_C DnaB helicase C 100.0 5.5E-33 1.2E-37 285.9 26.2 234 457-700 2-242 (242)
23 PHA02540 61 DNA primase; Provi 100.0 5.9E-34 1.3E-38 297.6 17.4 251 136-421 23-322 (337)
24 COG0358 DnaG DNA primase (bact 100.0 7.8E-33 1.7E-37 316.0 16.1 272 106-419 5-352 (568)
25 PHA02415 DNA primase domain-co 100.0 1.9E-29 4.2E-34 278.6 17.0 286 115-428 7-360 (930)
26 PRK07773 replicative DNA helic 100.0 1.3E-28 2.8E-33 294.2 22.4 220 433-660 183-407 (886)
27 TIGR00646 MG010 DNA primase-re 99.9 3.9E-26 8.5E-31 222.9 16.4 174 220-418 28-214 (218)
28 PRK08624 hypothetical protein; 99.9 1.1E-25 2.3E-30 235.2 20.4 230 114-372 10-311 (373)
29 PHA02031 putative DnaG-like pr 99.9 7.1E-25 1.5E-29 218.7 12.9 232 137-415 18-263 (266)
30 COG1066 Sms Predicted ATP-depe 99.9 7E-22 1.5E-26 206.5 20.5 199 446-697 70-271 (456)
31 cd01121 Sms Sms (bacterial rad 99.9 2E-20 4.4E-25 201.9 21.9 197 447-695 60-259 (372)
32 TIGR03878 thermo_KaiC_2 KaiC d 99.9 5.6E-20 1.2E-24 190.5 22.7 209 449-688 2-237 (259)
33 TIGR00416 sms DNA repair prote 99.8 9.5E-20 2.1E-24 202.1 21.4 198 447-696 72-272 (454)
34 PRK11823 DNA repair protein Ra 99.8 1.9E-19 4.2E-24 199.7 22.2 197 447-695 58-257 (446)
35 PRK05973 replicative DNA helic 99.8 4.7E-20 1E-24 186.1 15.3 169 457-664 53-223 (237)
36 TIGR03877 thermo_KaiC_1 KaiC d 99.8 1.2E-18 2.6E-23 178.6 22.1 211 450-690 2-217 (237)
37 cd01393 recA_like RecA is a b 99.8 2.9E-18 6.3E-23 174.5 21.4 206 451-691 1-224 (226)
38 PRK09361 radB DNA repair and r 99.8 6.4E-18 1.4E-22 172.0 21.8 197 450-691 4-211 (225)
39 PF06745 KaiC: KaiC; InterPro 99.8 3.5E-18 7.5E-23 174.1 18.4 210 451-700 1-217 (226)
40 cd01394 radB RadB. The archaea 99.8 1.3E-17 2.7E-22 169.0 22.1 197 451-691 1-207 (218)
41 PRK04328 hypothetical protein; 99.8 1.8E-17 3.9E-22 170.9 23.1 213 449-690 3-219 (249)
42 TIGR03881 KaiC_arch_4 KaiC dom 99.8 4.6E-17 1E-21 166.1 22.7 197 451-688 2-210 (229)
43 PF13481 AAA_25: AAA domain; P 99.8 6.4E-18 1.4E-22 167.6 15.9 169 447-633 10-191 (193)
44 cd00983 recA RecA is a bacter 99.8 4.4E-17 9.6E-22 171.4 21.7 217 447-700 32-262 (325)
45 PLN03187 meiotic recombination 99.8 2.3E-17 5E-22 175.6 17.7 238 410-691 75-330 (344)
46 TIGR02012 tigrfam_recA protein 99.8 3.2E-17 6.9E-22 172.4 18.5 217 447-700 32-262 (321)
47 TIGR02238 recomb_DMC1 meiotic 99.7 4.4E-17 9.6E-22 172.4 19.0 212 446-691 73-301 (313)
48 PRK09354 recA recombinase A; P 99.7 1E-16 2.2E-21 169.9 20.7 217 447-700 37-267 (349)
49 cd01123 Rad51_DMC1_radA Rad51_ 99.7 1.4E-16 3E-21 163.2 20.0 209 451-688 1-222 (235)
50 TIGR02239 recomb_RAD51 DNA rep 99.7 2.7E-16 5.9E-21 166.9 21.6 209 446-690 73-301 (316)
51 PLN03186 DNA repair protein RA 99.7 2.5E-16 5.3E-21 168.0 21.0 210 446-690 100-327 (342)
52 PRK09302 circadian clock prote 99.7 1.8E-16 3.9E-21 180.5 20.7 206 446-688 8-222 (509)
53 TIGR02237 recomb_radB DNA repa 99.7 4.5E-16 9.7E-21 156.5 21.0 189 458-691 1-198 (209)
54 TIGR02655 circ_KaiC circadian 99.7 2.9E-16 6.2E-21 177.0 20.8 202 447-688 241-445 (484)
55 TIGR03880 KaiC_arch_3 KaiC dom 99.7 3E-16 6.5E-21 159.6 18.8 198 454-688 1-201 (224)
56 PF08423 Rad51: Rad51; InterP 99.7 3.7E-16 8E-21 161.3 18.2 210 447-690 16-242 (256)
57 PTZ00035 Rad51 protein; Provis 99.7 5.8E-16 1.3E-20 165.7 18.7 236 411-690 68-322 (337)
58 PRK04301 radA DNA repair and r 99.7 1.5E-15 3.3E-20 162.3 21.1 211 447-691 80-305 (317)
59 TIGR02236 recomb_radA DNA repa 99.7 2.5E-15 5.3E-20 160.5 22.0 211 447-691 73-299 (310)
60 cd01125 repA Hexameric Replica 99.7 2.8E-15 6E-20 154.0 19.2 183 467-669 1-195 (239)
61 PRK06067 flagellar accessory p 99.7 5.6E-15 1.2E-19 151.3 21.3 200 447-688 3-208 (234)
62 PRK09302 circadian clock prote 99.7 4.6E-15 1E-19 168.9 21.3 202 447-687 251-454 (509)
63 TIGR02655 circ_KaiC circadian 99.6 3.8E-14 8.2E-19 159.8 22.7 201 450-687 2-211 (484)
64 cd01124 KaiC KaiC is a circadi 99.6 7.4E-14 1.6E-18 137.6 19.6 180 469-688 1-185 (187)
65 PRK09519 recA DNA recombinatio 99.6 7E-14 1.5E-18 161.3 21.8 217 447-705 37-267 (790)
66 COG0468 RecA RecA/RadA recombi 99.6 1.4E-13 3.1E-18 141.8 21.5 216 447-700 38-263 (279)
67 PRK08533 flagellar accessory p 99.6 2.3E-13 5E-18 138.6 22.3 213 450-703 5-221 (230)
68 PF00154 RecA: recA bacterial 99.6 1.8E-13 3.8E-18 143.7 20.8 216 447-699 30-259 (322)
69 COG0467 RAD55 RecA-superfamily 99.6 2.2E-13 4.9E-18 141.7 20.7 207 449-686 3-213 (260)
70 TIGR02760 TraI_TIGR conjugativ 99.5 5.1E-14 1.1E-18 179.1 16.1 223 155-419 1592-1876(1960)
71 PRK07078 hypothetical protein; 99.5 1.8E-13 3.8E-18 159.3 18.0 222 155-416 59-297 (759)
72 COG4643 Uncharacterized protei 99.5 2E-13 4.4E-18 138.5 11.4 136 251-410 161-304 (366)
73 PF13155 Toprim_2: Toprim-like 99.4 6.4E-13 1.4E-17 116.3 7.3 85 297-404 1-96 (96)
74 cd01120 RecA-like_NTPases RecA 99.4 5.3E-12 1.2E-16 120.7 14.1 163 469-664 1-165 (165)
75 COG2874 FlaH Predicted ATPases 99.4 4.5E-11 9.7E-16 115.8 17.8 211 451-703 10-226 (235)
76 COG3598 RepA RecA-family ATPas 99.3 4.6E-11 1E-15 121.6 16.6 150 464-634 86-245 (402)
77 KOG1564 DNA repair protein RHP 99.3 4.3E-12 9.4E-17 126.6 8.1 167 449-632 82-265 (351)
78 cd03364 TOPRIM_DnaG_primases T 99.3 2.9E-11 6.4E-16 101.7 10.0 75 294-387 1-78 (79)
79 KOG1434 Meiotic recombination 99.2 1.2E-11 2.6E-16 121.7 7.1 195 446-668 92-304 (335)
80 PF13362 Toprim_3: Toprim doma 99.2 4.1E-11 9E-16 104.8 9.4 91 295-410 1-96 (96)
81 PF13662 Toprim_4: Toprim doma 99.1 4.3E-10 9.3E-15 95.1 7.7 71 294-380 1-72 (81)
82 cd01029 TOPRIM_primases TOPRIM 99.0 1.2E-09 2.5E-14 91.9 8.8 68 294-380 1-69 (79)
83 PF01807 zf-CHC2: CHC2 zinc fi 99.0 7.3E-11 1.6E-15 103.0 -0.1 64 116-191 11-74 (97)
84 smart00400 ZnF_CHCC zinc finge 98.8 2.7E-09 5.9E-14 82.9 2.2 43 140-191 1-43 (55)
85 PF07088 GvpD: GvpD gas vesicl 98.8 7.2E-08 1.5E-12 101.4 13.2 204 464-706 7-211 (484)
86 smart00493 TOPRIM topoisomeras 98.6 1.9E-07 4.2E-12 77.7 7.9 71 294-380 1-73 (76)
87 PF12965 DUF3854: Domain of un 98.6 6.3E-07 1.4E-11 82.4 11.5 112 293-412 10-130 (130)
88 PRK04031 DNA primase; Provisio 98.6 1.1E-07 2.3E-12 101.1 7.1 101 290-422 166-266 (408)
89 cd01027 TOPRIM_RNase_M5_like T 98.5 2.6E-07 5.7E-12 77.6 7.8 68 294-380 2-71 (81)
90 PRK04296 thymidine kinase; Pro 98.4 2.1E-06 4.6E-11 84.9 12.1 141 466-666 1-143 (190)
91 PF08275 Toprim_N: DNA primase 98.3 1.1E-06 2.3E-11 81.0 5.3 70 220-289 12-126 (128)
92 KOG1433 DNA repair protein RAD 98.2 1.4E-05 3E-10 84.3 11.7 163 446-632 88-257 (326)
93 cd00544 CobU Adenosylcobinamid 98.2 1.2E-05 2.5E-10 77.9 10.1 43 469-515 1-44 (169)
94 PF13401 AAA_22: AAA domain; P 98.1 4.3E-05 9.3E-10 70.3 11.8 117 466-630 3-125 (131)
95 KOG2859 DNA repair protein, me 98.0 0.00013 2.7E-09 71.2 13.0 158 464-629 35-208 (293)
96 COG1136 SalX ABC-type antimicr 97.9 0.00023 4.9E-09 71.5 14.8 175 455-663 18-216 (226)
97 COG1120 FepC ABC-type cobalami 97.9 0.00017 3.7E-09 73.9 13.8 173 457-666 17-216 (258)
98 COG4604 CeuD ABC-type enteroch 97.9 0.00014 3.1E-09 70.2 12.1 157 458-629 17-194 (252)
99 PF13479 AAA_24: AAA domain 97.9 9.8E-05 2.1E-09 74.5 11.7 147 469-665 5-175 (213)
100 COG1121 ZnuC ABC-type Mn/Zn tr 97.9 0.00017 3.7E-09 73.5 13.4 174 456-666 18-216 (254)
101 PF00448 SRP54: SRP54-type pro 97.9 0.00036 7.8E-09 69.3 15.3 38 469-507 3-40 (196)
102 COG4619 ABC-type uncharacteriz 97.9 0.00031 6.7E-09 66.2 13.6 165 453-633 14-196 (223)
103 cd03115 SRP The signal recogni 97.8 0.0005 1.1E-08 66.8 15.1 38 469-507 2-39 (173)
104 smart00382 AAA ATPases associa 97.8 0.00012 2.5E-09 67.1 9.5 43 467-510 2-44 (148)
105 PRK12726 flagellar biosynthesi 97.8 0.00028 6.1E-09 75.9 12.8 41 464-505 203-243 (407)
106 PF05621 TniB: Bacterial TniB 97.8 0.00028 6E-09 73.5 12.3 61 562-628 127-187 (302)
107 TIGR01618 phage_P_loop phage n 97.7 0.00048 1E-08 69.3 13.6 153 468-666 13-184 (220)
108 cd00188 TOPRIM Topoisomerase-p 97.7 0.00011 2.4E-09 61.0 7.5 68 295-379 2-72 (83)
109 COG1131 CcmA ABC-type multidru 97.7 0.00032 7E-09 74.2 12.5 177 455-666 18-214 (293)
110 COG1122 CbiO ABC-type cobalt t 97.7 0.00014 3E-09 74.1 9.3 177 456-666 18-216 (235)
111 PRK05800 cobU adenosylcobinami 97.7 0.00028 6.1E-09 68.4 10.0 122 468-629 2-124 (170)
112 COG1126 GlnQ ABC-type polar am 97.6 0.0011 2.3E-08 65.4 13.5 174 456-665 16-212 (240)
113 PRK10867 signal recognition pa 97.6 0.0012 2.7E-08 73.1 15.6 40 468-507 101-140 (433)
114 KOG0061 Transporter, ABC super 97.6 0.00037 8.1E-09 81.1 12.1 36 458-493 46-82 (613)
115 PRK12724 flagellar biosynthesi 97.6 0.00078 1.7E-08 73.6 13.7 42 465-506 221-262 (432)
116 COG4107 PhnK ABC-type phosphon 97.6 0.0016 3.4E-08 61.7 13.7 155 462-629 27-210 (258)
117 TIGR00959 ffh signal recogniti 97.6 0.0017 3.6E-08 72.0 15.6 40 468-507 100-139 (428)
118 PRK14722 flhF flagellar biosyn 97.5 0.002 4.4E-08 69.9 15.6 64 464-528 134-201 (374)
119 PRK11889 flhF flagellar biosyn 97.5 0.001 2.3E-08 71.8 13.1 39 467-506 241-279 (436)
120 PRK14974 cell division protein 97.5 0.0022 4.7E-08 68.9 15.6 39 467-506 140-178 (336)
121 TIGR00064 ftsY signal recognit 97.5 0.0034 7.3E-08 65.7 16.6 40 466-506 71-110 (272)
122 cd03256 ABC_PhnC_transporter A 97.5 0.00047 1E-08 70.7 10.2 61 578-664 160-220 (241)
123 PF13173 AAA_14: AAA domain 97.5 0.00076 1.6E-08 62.1 10.5 41 467-509 2-42 (128)
124 PRK13634 cbiO cobalt transport 97.5 0.0015 3.2E-08 69.2 13.4 61 578-664 161-221 (290)
125 PRK05703 flhF flagellar biosyn 97.4 0.0013 2.9E-08 73.0 12.8 42 465-506 219-261 (424)
126 cd03261 ABC_Org_Solvent_Resist 97.4 0.0027 5.8E-08 65.0 14.1 61 578-664 152-212 (235)
127 TIGR01184 ntrCD nitrate transp 97.4 0.0032 7E-08 64.2 14.5 62 578-665 130-191 (230)
128 TIGR01277 thiQ thiamine ABC tr 97.4 0.0042 9.1E-08 62.5 14.9 60 579-664 145-204 (213)
129 TIGR01425 SRP54_euk signal rec 97.4 0.002 4.4E-08 71.0 13.4 38 468-506 101-138 (429)
130 cd03214 ABC_Iron-Siderophores_ 97.4 0.003 6.5E-08 61.8 13.4 153 458-664 15-173 (180)
131 PRK09544 znuC high-affinity zi 97.4 0.0021 4.6E-08 66.5 12.9 152 458-630 20-180 (251)
132 TIGR02315 ABC_phnC phosphonate 97.4 0.001 2.2E-08 68.4 10.5 61 578-664 161-221 (243)
133 cd03301 ABC_MalK_N The N-termi 97.4 0.0046 9.9E-08 62.2 15.0 60 578-663 146-205 (213)
134 PRK13646 cbiO cobalt transport 97.4 0.0016 3.5E-08 68.8 12.2 35 457-491 22-57 (286)
135 cd03259 ABC_Carb_Solutes_like 97.4 0.0043 9.2E-08 62.4 14.7 61 578-664 146-206 (213)
136 cd03229 ABC_Class3 This class 97.4 0.00091 2E-08 65.4 9.5 60 578-663 116-175 (178)
137 PRK11308 dppF dipeptide transp 97.4 0.0033 7.2E-08 67.7 14.6 162 457-630 30-214 (327)
138 COG1127 Ttg2A ABC-type transpo 97.4 0.0026 5.7E-08 63.7 12.5 174 458-666 24-223 (263)
139 PRK10416 signal recognition pa 97.4 0.0049 1.1E-07 65.9 15.7 41 465-506 112-152 (318)
140 PRK15112 antimicrobial peptide 97.3 0.0034 7.5E-08 65.6 14.2 61 578-664 165-225 (267)
141 cd00009 AAA The AAA+ (ATPases 97.3 0.0018 4E-08 59.7 10.9 40 466-506 18-57 (151)
142 TIGR03499 FlhF flagellar biosy 97.3 0.0015 3.3E-08 68.8 11.4 43 464-506 191-234 (282)
143 TIGR03864 PQQ_ABC_ATP ABC tran 97.3 0.006 1.3E-07 62.4 15.6 45 578-630 148-192 (236)
144 cd03265 ABC_DrrA DrrA is the A 97.3 0.0039 8.4E-08 63.1 14.0 61 578-664 147-207 (220)
145 cd03293 ABC_NrtD_SsuB_transpor 97.3 0.0056 1.2E-07 61.9 15.0 61 578-664 147-207 (220)
146 PRK13636 cbiO cobalt transport 97.3 0.0014 3.1E-08 69.0 11.0 61 578-664 157-217 (283)
147 COG1124 DppF ABC-type dipeptid 97.3 0.00039 8.4E-09 69.7 6.0 63 578-666 157-219 (252)
148 cd03238 ABC_UvrA The excision 97.3 0.0051 1.1E-07 60.0 13.8 30 458-487 11-41 (176)
149 cd03258 ABC_MetN_methionine_tr 97.3 0.0061 1.3E-07 62.2 15.2 61 578-664 156-216 (233)
150 PRK11248 tauB taurine transpor 97.3 0.0061 1.3E-07 63.3 15.2 61 578-664 144-204 (255)
151 cd03216 ABC_Carb_Monos_I This 97.3 0.00094 2E-08 64.3 8.4 33 458-490 16-49 (163)
152 PRK15079 oligopeptide ABC tran 97.3 0.0054 1.2E-07 66.1 15.0 45 578-630 177-221 (331)
153 TIGR00960 3a0501s02 Type II (G 97.3 0.0056 1.2E-07 61.7 14.3 33 457-489 18-51 (216)
154 cd03237 ABC_RNaseL_inhibitor_d 97.3 0.0066 1.4E-07 62.6 15.0 61 578-664 131-191 (246)
155 PRK11022 dppD dipeptide transp 97.3 0.0091 2E-07 64.3 16.6 45 578-630 169-213 (326)
156 cd03219 ABC_Mj1267_LivG_branch 97.3 0.0079 1.7E-07 61.5 15.5 32 458-489 16-48 (236)
157 cd03226 ABC_cobalt_CbiO_domain 97.3 0.0019 4.2E-08 64.5 10.7 33 458-490 16-49 (205)
158 cd03225 ABC_cobalt_CbiO_domain 97.3 0.0042 9E-08 62.4 13.1 33 458-490 17-50 (211)
159 PF00004 AAA: ATPase family as 97.3 0.00081 1.8E-08 61.6 7.3 32 470-505 1-32 (132)
160 COG0410 LivF ABC-type branched 97.2 0.0013 2.8E-08 65.5 9.0 165 464-665 26-213 (237)
161 TIGR02770 nickel_nikD nickel i 97.2 0.0023 5E-08 65.2 11.3 61 578-664 141-201 (230)
162 PRK13633 cobalt transporter AT 97.2 0.0034 7.4E-08 66.1 12.8 34 457-490 25-59 (280)
163 cd03298 ABC_ThiQ_thiamine_tran 97.2 0.0044 9.5E-08 62.2 13.1 61 578-664 144-204 (211)
164 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.2 0.0067 1.4E-07 61.2 14.4 34 457-490 19-53 (218)
165 PRK11247 ssuB aliphatic sulfon 97.2 0.0047 1E-07 64.1 13.6 45 578-630 149-193 (257)
166 cd03267 ABC_NatA_like Similar 97.2 0.0061 1.3E-07 62.4 14.3 60 578-663 169-228 (236)
167 PRK06731 flhF flagellar biosyn 97.2 0.0077 1.7E-07 62.7 15.0 41 466-507 74-114 (270)
168 cd03269 ABC_putative_ATPase Th 97.2 0.0045 9.8E-08 62.1 13.0 33 458-490 16-49 (210)
169 PRK10575 iron-hydroxamate tran 97.2 0.0013 2.9E-08 68.6 9.4 45 578-630 163-207 (265)
170 cd03300 ABC_PotA_N PotA is an 97.2 0.0068 1.5E-07 61.9 14.4 61 578-664 146-206 (232)
171 PRK11153 metN DL-methionine tr 97.2 0.0055 1.2E-07 66.5 14.4 45 578-630 156-200 (343)
172 cd03222 ABC_RNaseL_inhibitor T 97.2 0.0032 6.8E-08 61.5 11.3 33 458-490 16-48 (177)
173 PRK11701 phnK phosphonate C-P 97.2 0.0046 9.9E-08 64.2 13.3 61 578-664 167-227 (258)
174 cd03230 ABC_DR_subfamily_A Thi 97.2 0.003 6.4E-08 61.4 11.1 33 458-490 16-49 (173)
175 PRK10247 putative ABC transpor 97.2 0.011 2.4E-07 60.1 15.7 62 578-666 153-214 (225)
176 COG1435 Tdk Thymidine kinase [ 97.2 0.0011 2.4E-08 64.3 7.8 142 465-662 2-143 (201)
177 PRK13637 cbiO cobalt transport 97.2 0.0028 6E-08 67.0 11.5 34 457-490 22-56 (287)
178 cd03295 ABC_OpuCA_Osmoprotecti 97.2 0.009 2E-07 61.4 15.1 61 578-664 151-211 (242)
179 PF05729 NACHT: NACHT domain 97.2 0.0031 6.8E-08 60.0 10.9 27 469-495 2-28 (166)
180 PRK09473 oppD oligopeptide tra 97.2 0.0068 1.5E-07 65.4 14.6 45 578-630 177-221 (330)
181 PRK13537 nodulation ABC transp 97.2 0.0062 1.3E-07 65.0 14.2 34 457-490 22-56 (306)
182 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.2 0.0045 9.8E-08 62.9 12.6 33 458-490 38-71 (224)
183 cd03257 ABC_NikE_OppD_transpor 97.2 0.009 2E-07 60.6 14.8 61 578-664 161-221 (228)
184 TIGR01188 drrA daunorubicin re 97.2 0.0048 1E-07 65.7 13.2 33 457-489 8-41 (302)
185 COG1134 TagH ABC-type polysacc 97.2 0.0029 6.3E-08 63.6 10.7 171 454-666 39-224 (249)
186 PRK14250 phosphate ABC transpo 97.2 0.0082 1.8E-07 61.7 14.5 61 578-664 147-207 (241)
187 TIGR00708 cobA cob(I)alamin ad 97.2 0.0062 1.4E-07 58.8 12.6 146 469-666 7-158 (173)
188 COG1123 ATPase components of v 97.2 0.0078 1.7E-07 67.7 15.1 182 456-666 23-232 (539)
189 PRK00771 signal recognition pa 97.2 0.014 3E-07 65.0 17.0 140 467-629 95-241 (437)
190 cd03262 ABC_HisP_GlnQ_permease 97.2 0.0053 1.1E-07 61.7 12.7 27 464-490 23-49 (213)
191 PRK10418 nikD nickel transport 97.2 0.0067 1.4E-07 62.9 13.8 61 578-664 156-216 (254)
192 TIGR00968 3a0106s01 sulfate AB 97.2 0.003 6.4E-08 64.8 11.0 61 578-664 146-206 (237)
193 cd03283 ABC_MutS-like MutS-lik 97.2 0.0065 1.4E-07 60.6 13.1 36 464-499 22-58 (199)
194 cd03213 ABCG_EPDR ABCG transpo 97.2 0.0043 9.4E-08 61.5 11.8 34 457-490 24-58 (194)
195 PRK13648 cbiO cobalt transport 97.2 0.0034 7.5E-08 65.6 11.7 33 458-490 25-58 (269)
196 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.0093 2E-07 56.9 13.4 144 469-663 4-153 (159)
197 cd03296 ABC_CysA_sulfate_impor 97.1 0.0048 1E-07 63.3 12.5 61 578-664 152-212 (239)
198 PRK10771 thiQ thiamine transpo 97.1 0.0068 1.5E-07 61.9 13.5 61 578-664 145-205 (232)
199 cd03215 ABC_Carb_Monos_II This 97.1 0.0042 9.2E-08 60.9 11.5 35 457-491 15-50 (182)
200 PRK09536 btuD corrinoid ABC tr 97.1 0.0037 8E-08 69.0 12.2 33 458-490 19-52 (402)
201 PRK08181 transposase; Validate 97.1 0.0039 8.4E-08 65.0 11.7 40 464-504 103-142 (269)
202 PRK13652 cbiO cobalt transport 97.1 0.0072 1.6E-07 63.5 14.0 34 457-490 19-53 (277)
203 PRK10419 nikE nickel transport 97.1 0.008 1.7E-07 62.8 14.3 61 578-664 167-227 (268)
204 PRK13651 cobalt transporter AT 97.1 0.004 8.7E-08 66.4 12.1 35 456-490 21-56 (305)
205 PRK11432 fbpC ferric transport 97.1 0.0032 7E-08 68.4 11.5 44 579-630 153-196 (351)
206 PRK09452 potA putrescine/sperm 97.1 0.0011 2.3E-08 72.7 7.9 44 579-630 161-204 (375)
207 PRK11650 ugpC glycerol-3-phosp 97.1 0.0038 8.1E-08 68.0 11.9 45 578-630 150-194 (356)
208 PRK13645 cbiO cobalt transport 97.1 0.0096 2.1E-07 63.0 14.7 34 457-490 26-60 (289)
209 PRK13643 cbiO cobalt transport 97.1 0.0036 7.8E-08 66.2 11.4 34 457-490 21-55 (288)
210 PRK12727 flagellar biosynthesi 97.1 0.017 3.7E-07 65.0 16.9 43 464-506 347-390 (559)
211 cd03235 ABC_Metallic_Cations A 97.1 0.0061 1.3E-07 61.3 12.5 33 458-490 15-48 (213)
212 TIGR03575 selen_PSTK_euk L-ser 97.1 0.0061 1.3E-07 65.4 13.0 38 469-506 1-38 (340)
213 PRK12377 putative replication 97.1 0.0039 8.5E-08 64.1 11.1 37 468-505 102-138 (248)
214 TIGR02769 nickel_nikE nickel i 97.1 0.013 2.8E-07 61.2 15.3 61 578-664 166-226 (265)
215 cd03292 ABC_FtsE_transporter F 97.1 0.012 2.5E-07 59.2 14.5 33 458-490 17-50 (214)
216 TIGR03005 ectoine_ehuA ectoine 97.1 0.012 2.7E-07 60.8 15.0 61 578-664 162-222 (252)
217 PRK10851 sulfate/thiosulfate t 97.1 0.0056 1.2E-07 66.6 12.9 45 578-630 152-196 (353)
218 COG1419 FlhF Flagellar GTP-bin 97.1 0.0067 1.4E-07 65.6 13.0 82 465-556 201-288 (407)
219 COG3840 ThiQ ABC-type thiamine 97.1 0.0053 1.1E-07 58.9 10.8 183 451-666 7-207 (231)
220 COG3854 SpoIIIAA ncharacterize 97.1 0.003 6.6E-08 62.6 9.4 131 464-648 133-269 (308)
221 cd03299 ABC_ModC_like Archeal 97.1 0.013 2.9E-07 59.9 14.8 62 577-664 144-205 (235)
222 TIGR01166 cbiO cobalt transpor 97.1 0.0029 6.2E-08 62.5 9.4 32 458-489 8-40 (190)
223 PRK10619 histidine/lysine/argi 97.1 0.011 2.5E-07 61.2 14.4 33 458-490 21-54 (257)
224 cd03294 ABC_Pro_Gly_Bertaine T 97.1 0.014 2.9E-07 61.2 14.9 61 578-664 176-236 (269)
225 PRK11264 putative amino-acid A 97.1 0.014 3E-07 60.2 14.9 32 458-489 19-51 (250)
226 TIGR03740 galliderm_ABC gallid 97.1 0.012 2.6E-07 59.7 14.1 27 464-490 23-49 (223)
227 PRK13639 cbiO cobalt transport 97.0 0.0039 8.5E-08 65.4 10.7 33 457-489 17-50 (275)
228 PRK11000 maltose/maltodextrin 97.0 0.011 2.4E-07 64.7 14.6 45 578-630 149-193 (369)
229 PRK13650 cbiO cobalt transport 97.0 0.004 8.7E-08 65.5 10.8 45 578-630 156-200 (279)
230 PRK12723 flagellar biosynthesi 97.0 0.0082 1.8E-07 65.7 13.3 40 467-506 174-216 (388)
231 PRK13536 nodulation factor exp 97.0 0.014 3E-07 63.2 15.0 34 457-490 56-90 (340)
232 cd03266 ABC_NatA_sodium_export 97.0 0.013 2.8E-07 59.1 14.0 32 458-489 21-53 (218)
233 PF01580 FtsK_SpoIIIE: FtsK/Sp 97.0 0.0034 7.3E-08 62.8 9.6 165 450-629 19-201 (205)
234 TIGR00750 lao LAO/AO transport 97.0 0.0032 6.9E-08 67.0 9.9 50 457-507 23-73 (300)
235 PRK11831 putative ABC transpor 97.0 0.014 3.1E-07 61.0 14.7 45 578-630 159-203 (269)
236 COG3638 ABC-type phosphate/pho 97.0 0.012 2.5E-07 59.0 12.9 166 451-630 13-207 (258)
237 TIGR02323 CP_lyasePhnK phospho 97.0 0.0093 2E-07 61.7 13.0 61 578-664 164-224 (253)
238 PRK10070 glycine betaine trans 97.0 0.015 3.3E-07 64.2 15.2 45 578-630 180-224 (400)
239 TIGR03265 PhnT2 putative 2-ami 97.0 0.011 2.3E-07 64.4 13.9 44 579-630 151-194 (353)
240 PRK11300 livG leucine/isoleuci 97.0 0.0063 1.4E-07 63.0 11.7 61 578-664 169-229 (255)
241 cd03234 ABCG_White The White s 97.0 0.006 1.3E-07 62.0 11.2 35 457-491 22-57 (226)
242 PRK10908 cell division protein 97.0 0.0063 1.4E-07 61.6 11.3 33 458-490 18-51 (222)
243 PF13245 AAA_19: Part of AAA d 97.0 0.0019 4.2E-08 53.6 6.2 50 466-515 9-62 (76)
244 cd03218 ABC_YhbG The ABC trans 97.0 0.0061 1.3E-07 62.1 11.3 33 458-490 16-49 (232)
245 PRK13638 cbiO cobalt transport 97.0 0.012 2.5E-07 61.7 13.6 33 457-489 16-49 (271)
246 PRK13546 teichoic acids export 97.0 0.014 3.1E-07 60.8 14.2 35 456-490 38-73 (264)
247 cd03297 ABC_ModC_molybdenum_tr 97.0 0.017 3.8E-07 58.0 14.4 61 578-664 147-207 (214)
248 PRK11629 lolD lipoprotein tran 97.0 0.018 3.8E-07 58.9 14.6 34 457-490 24-58 (233)
249 TIGR02673 FtsE cell division A 97.0 0.015 3.2E-07 58.5 13.9 32 458-489 18-50 (214)
250 PRK13647 cbiO cobalt transport 97.0 0.0065 1.4E-07 63.8 11.6 33 457-489 20-53 (274)
251 PRK06921 hypothetical protein; 97.0 0.008 1.7E-07 62.7 12.1 39 466-504 116-154 (266)
252 PRK11144 modC molybdate transp 97.0 0.016 3.4E-07 63.1 14.9 45 578-630 144-188 (352)
253 PRK13635 cbiO cobalt transport 97.0 0.0052 1.1E-07 64.7 10.8 45 578-630 156-200 (279)
254 COG2884 FtsE Predicted ATPase 97.0 0.0073 1.6E-07 58.4 10.6 166 450-631 10-197 (223)
255 TIGR01288 nodI ATP-binding ABC 97.0 0.014 3.1E-07 62.2 14.3 33 457-489 19-52 (303)
256 TIGR03873 F420-0_ABC_ATP propo 97.0 0.0044 9.4E-08 64.3 10.1 33 458-490 17-50 (256)
257 TIGR03771 anch_rpt_ABC anchore 97.0 0.018 3.8E-07 58.5 14.3 27 464-490 3-29 (223)
258 cd03268 ABC_BcrA_bacitracin_re 96.9 0.0056 1.2E-07 61.3 10.6 34 457-490 15-49 (208)
259 PRK10584 putative ABC transpor 96.9 0.009 1.9E-07 60.7 12.2 45 578-630 162-206 (228)
260 PRK13631 cbiO cobalt transport 96.9 0.0088 1.9E-07 64.2 12.6 34 457-490 41-75 (320)
261 TIGR02211 LolD_lipo_ex lipopro 96.9 0.019 4.1E-07 58.0 14.4 34 457-490 20-54 (221)
262 COG0541 Ffh Signal recognition 96.9 0.039 8.4E-07 60.0 17.1 142 467-629 100-248 (451)
263 TIGR03410 urea_trans_UrtE urea 96.9 0.009 2E-07 60.8 12.1 61 578-664 147-207 (230)
264 PRK14723 flhF flagellar biosyn 96.9 0.025 5.5E-07 66.5 17.0 114 464-587 182-302 (767)
265 cd03260 ABC_PstB_phosphate_tra 96.9 0.023 4.9E-07 57.7 15.0 35 457-491 15-50 (227)
266 PRK13641 cbiO cobalt transport 96.9 0.012 2.7E-07 62.1 13.4 33 457-489 22-55 (287)
267 PRK15134 microcin C ABC transp 96.9 0.012 2.5E-07 67.9 14.3 35 457-491 24-59 (529)
268 PRK10938 putative molybdenum t 96.9 0.01 2.2E-07 67.8 13.6 34 457-490 18-52 (490)
269 cd03233 ABC_PDR_domain1 The pl 96.9 0.0069 1.5E-07 60.5 10.8 35 457-491 22-57 (202)
270 TIGR02142 modC_ABC molybdenum 96.9 0.019 4.1E-07 62.6 15.1 45 578-630 147-191 (354)
271 COG4555 NatA ABC-type Na+ tran 96.9 0.019 4.2E-07 56.1 13.1 51 454-505 14-65 (245)
272 PRK10253 iron-enterobactin tra 96.9 0.0045 9.8E-08 64.6 9.8 33 458-490 23-56 (265)
273 cd03224 ABC_TM1139_LivF_branch 96.9 0.0084 1.8E-07 60.6 11.5 33 457-489 15-48 (222)
274 COG4559 ABC-type hemin transpo 96.9 0.014 3.1E-07 57.5 12.2 175 458-666 17-218 (259)
275 COG4608 AppF ABC-type oligopep 96.9 0.0092 2E-07 61.1 11.6 139 455-629 26-168 (268)
276 TIGR03258 PhnT 2-aminoethylpho 96.9 0.0076 1.6E-07 65.7 11.7 33 457-489 20-53 (362)
277 PRK09984 phosphonate/organopho 96.9 0.0041 9E-08 64.7 9.2 61 578-664 168-228 (262)
278 PRK13640 cbiO cobalt transport 96.9 0.008 1.7E-07 63.3 11.4 45 578-630 159-203 (282)
279 PRK13649 cbiO cobalt transport 96.9 0.0044 9.6E-08 65.2 9.4 34 457-490 22-56 (280)
280 PRK13548 hmuV hemin importer A 96.9 0.0081 1.8E-07 62.4 11.2 33 458-490 18-51 (258)
281 PRK11124 artP arginine transpo 96.9 0.026 5.7E-07 57.9 14.8 27 464-490 25-51 (242)
282 cd00267 ABC_ATPase ABC (ATP-bi 96.9 0.0066 1.4E-07 57.9 9.7 26 464-489 22-47 (157)
283 COG2909 MalT ATP-dependent tra 96.9 0.0067 1.4E-07 70.5 11.2 133 464-631 34-170 (894)
284 TIGR03608 L_ocin_972_ABC putat 96.8 0.013 2.8E-07 58.5 12.2 33 458-490 14-47 (206)
285 cd03227 ABC_Class2 ABC-type Cl 96.8 0.017 3.8E-07 55.4 12.5 31 464-494 18-48 (162)
286 TIGR00955 3a01204 The Eye Pigm 96.8 0.011 2.3E-07 69.5 13.2 35 457-491 40-75 (617)
287 PRK11607 potG putrescine trans 96.8 0.0092 2E-07 65.5 11.9 45 578-630 165-209 (377)
288 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.012 2.7E-07 55.3 11.2 26 464-489 23-48 (144)
289 COG0444 DppD ABC-type dipeptid 96.8 0.0081 1.7E-07 62.9 10.7 65 576-666 167-231 (316)
290 TIGR02314 ABC_MetN D-methionin 96.8 0.027 5.8E-07 61.0 15.2 44 579-630 157-200 (343)
291 cd03246 ABCC_Protease_Secretio 96.8 0.01 2.2E-07 57.6 10.9 27 464-490 25-51 (173)
292 COG1110 Reverse gyrase [DNA re 96.8 0.0058 1.3E-07 71.9 10.5 123 464-595 94-218 (1187)
293 PRK09493 glnQ glutamine ABC tr 96.8 0.027 6E-07 57.7 14.7 33 458-490 17-50 (240)
294 PRK08727 hypothetical protein; 96.8 0.0091 2E-07 61.1 10.9 37 468-505 42-78 (233)
295 PRK13545 tagH teichoic acids e 96.8 0.015 3.3E-07 65.6 13.4 33 458-490 40-73 (549)
296 cd03114 ArgK-like The function 96.8 0.003 6.5E-08 59.8 6.8 37 470-507 2-38 (148)
297 PRK08116 hypothetical protein; 96.8 0.019 4.2E-07 59.9 13.5 36 468-504 115-150 (268)
298 PF04665 Pox_A32: Poxvirus A32 96.8 0.012 2.7E-07 59.9 11.5 35 469-505 15-49 (241)
299 PRK10261 glutathione transport 96.8 0.019 4.1E-07 67.4 14.9 36 456-491 30-66 (623)
300 PRK15093 antimicrobial peptide 96.8 0.038 8.2E-07 59.6 16.1 46 577-630 173-218 (330)
301 cd03247 ABCC_cytochrome_bd The 96.8 0.015 3.2E-07 56.8 11.8 34 458-491 18-52 (178)
302 PRK10895 lipopolysaccharide AB 96.8 0.021 4.5E-07 58.6 13.5 34 458-491 19-53 (241)
303 TIGR01978 sufC FeS assembly AT 96.8 0.047 1E-06 55.9 16.1 33 458-490 16-49 (243)
304 PRK13768 GTPase; Provisional 96.8 0.01 2.2E-07 61.6 11.1 38 469-507 4-41 (253)
305 cd03251 ABCC_MsbA MsbA is an e 96.8 0.0083 1.8E-07 61.2 10.4 35 457-491 17-52 (234)
306 PRK10263 DNA translocase FtsK; 96.8 0.012 2.5E-07 71.9 12.9 148 464-631 1007-1186(1355)
307 cd03232 ABC_PDR_domain2 The pl 96.8 0.011 2.5E-07 58.3 11.0 32 458-489 23-55 (192)
308 cd03228 ABCC_MRP_Like The MRP 96.8 0.016 3.4E-07 56.2 11.7 33 458-490 18-51 (171)
309 COG1123 ATPase components of v 96.8 0.016 3.5E-07 65.2 13.1 176 455-666 304-507 (539)
310 TIGR03522 GldA_ABC_ATP gliding 96.8 0.016 3.4E-07 61.8 12.6 33 457-489 17-50 (301)
311 COG1116 TauB ABC-type nitrate/ 96.8 0.026 5.7E-07 57.2 13.3 171 455-664 16-206 (248)
312 PRK03695 vitamin B12-transport 96.7 0.0075 1.6E-07 62.3 9.8 32 458-489 12-44 (248)
313 PF01751 Toprim: Toprim domain 96.7 0.01 2.2E-07 52.1 9.3 80 295-378 1-84 (100)
314 COG1117 PstB ABC-type phosphat 96.7 0.015 3.3E-07 57.3 11.1 31 457-487 22-53 (253)
315 cd03236 ABC_RNaseL_inhibitor_d 96.7 0.02 4.3E-07 59.4 12.8 35 464-499 23-57 (255)
316 TIGR02982 heterocyst_DevA ABC 96.7 0.023 4.9E-07 57.5 13.1 60 578-664 157-216 (220)
317 PRK11614 livF leucine/isoleuci 96.7 0.0062 1.3E-07 62.3 9.0 33 457-489 20-53 (237)
318 TIGR03411 urea_trans_UrtD urea 96.7 0.014 3E-07 59.9 11.6 34 457-490 17-51 (242)
319 PF02492 cobW: CobW/HypB/UreG, 96.7 0.0061 1.3E-07 59.6 8.5 59 469-530 2-60 (178)
320 PRK13409 putative ATPase RIL; 96.7 0.02 4.3E-07 66.7 14.0 61 578-664 469-529 (590)
321 PRK13539 cytochrome c biogenes 96.7 0.0092 2E-07 59.8 9.9 33 458-490 18-51 (207)
322 PRK13642 cbiO cobalt transport 96.7 0.013 2.8E-07 61.6 11.4 34 457-490 22-56 (277)
323 PRK13632 cbiO cobalt transport 96.7 0.014 3.1E-07 61.0 11.6 34 457-490 24-58 (271)
324 PF08433 KTI12: Chromatin asso 96.7 0.0042 9.2E-08 64.8 7.4 35 469-504 3-37 (270)
325 PLN03211 ABC transporter G-25; 96.7 0.023 4.9E-07 67.1 14.3 34 457-490 83-117 (659)
326 PRK14258 phosphate ABC transpo 96.7 0.06 1.3E-06 56.0 16.0 61 578-664 166-226 (261)
327 KOG0058 Peptide exporter, ABC 96.7 0.028 6E-07 64.6 14.2 175 455-666 481-679 (716)
328 PTZ00293 thymidine kinase; Pro 96.6 0.011 2.4E-07 58.9 9.8 138 465-665 2-139 (211)
329 COG2401 ABC-type ATPase fused 96.6 0.0073 1.6E-07 64.8 8.8 48 578-633 523-570 (593)
330 PF02374 ArsA_ATPase: Anion-tr 96.6 0.0069 1.5E-07 64.5 8.9 40 468-508 2-41 (305)
331 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.6 0.017 3.7E-07 59.1 11.6 35 457-491 18-53 (238)
332 cd03263 ABC_subfamily_A The AB 96.6 0.017 3.7E-07 58.3 11.4 33 458-490 18-51 (220)
333 PRK00411 cdc6 cell division co 96.6 0.027 5.9E-07 62.2 13.8 52 468-519 56-110 (394)
334 PF00308 Bac_DnaA: Bacterial d 96.6 0.032 7E-07 56.4 13.2 37 469-505 36-73 (219)
335 COG1658 Small primase-like pro 96.6 0.007 1.5E-07 55.0 7.3 72 294-380 10-81 (127)
336 TIGR03018 pepcterm_TyrKin exop 96.6 0.006 1.3E-07 61.1 7.7 41 469-509 38-78 (207)
337 PRK15177 Vi polysaccharide exp 96.6 0.033 7.1E-07 56.1 13.1 27 464-490 10-36 (213)
338 TIGR01189 ccmA heme ABC export 96.6 0.043 9.2E-07 54.5 13.7 33 458-490 16-49 (198)
339 PRK05986 cob(I)alamin adenolsy 96.6 0.03 6.5E-07 54.9 12.1 148 466-666 21-176 (191)
340 PRK11231 fecE iron-dicitrate t 96.6 0.024 5.3E-07 58.7 12.4 33 458-490 18-51 (255)
341 PRK11176 lipid transporter ATP 96.6 0.021 4.5E-07 66.6 13.3 174 457-664 358-553 (582)
342 COG4586 ABC-type uncharacteriz 96.6 0.03 6.4E-07 57.3 12.2 174 464-666 47-234 (325)
343 COG3842 PotA ABC-type spermidi 96.6 0.0067 1.5E-07 65.1 8.2 36 454-489 17-53 (352)
344 PRK15134 microcin C ABC transp 96.6 0.036 7.9E-07 63.8 14.9 61 578-664 441-501 (529)
345 cd03243 ABC_MutS_homologs The 96.6 0.014 3.1E-07 58.1 10.1 29 464-492 26-54 (202)
346 COG0411 LivG ABC-type branched 96.6 0.031 6.7E-07 56.3 12.2 184 454-666 16-227 (250)
347 PRK06995 flhF flagellar biosyn 96.6 0.074 1.6E-06 59.8 16.6 62 464-526 253-318 (484)
348 COG1118 CysA ABC-type sulfate/ 96.6 0.047 1E-06 56.8 13.7 35 454-488 14-49 (345)
349 TIGR03269 met_CoM_red_A2 methy 96.6 0.051 1.1E-06 62.5 15.9 34 458-491 16-50 (520)
350 PRK14235 phosphate transporter 96.6 0.075 1.6E-06 55.5 15.9 34 458-491 35-69 (267)
351 cd03282 ABC_MSH4_euk MutS4 hom 96.6 0.0081 1.7E-07 60.1 8.2 30 464-493 26-55 (204)
352 cd01131 PilT Pilus retraction 96.5 0.012 2.6E-07 58.5 9.4 40 468-509 2-41 (198)
353 TIGR02324 CP_lyasePhnL phospho 96.5 0.037 7.9E-07 56.1 13.1 44 457-501 23-67 (224)
354 cd00550 ArsA_ATPase Oxyanion-t 96.5 0.0073 1.6E-07 62.6 8.0 38 469-507 2-39 (254)
355 TIGR01420 pilT_fam pilus retra 96.5 0.012 2.6E-07 63.9 9.9 45 464-510 119-163 (343)
356 cd03217 ABC_FeS_Assembly ABC-t 96.5 0.016 3.4E-07 57.8 10.0 33 458-490 16-49 (200)
357 PRK06835 DNA replication prote 96.5 0.019 4.2E-07 61.6 11.3 39 466-505 182-220 (329)
358 PRK13547 hmuV hemin importer A 96.5 0.031 6.6E-07 58.6 12.6 33 458-490 17-50 (272)
359 PRK10522 multidrug transporter 96.5 0.013 2.8E-07 67.9 10.7 175 457-664 338-524 (547)
360 COG1618 Predicted nucleotide k 96.5 0.011 2.3E-07 55.8 8.0 36 470-506 8-44 (179)
361 COG0552 FtsY Signal recognitio 96.5 0.028 6.1E-07 59.2 12.0 37 468-505 140-176 (340)
362 cd03279 ABC_sbcCD SbcCD and ot 96.5 0.037 8.1E-07 55.7 12.8 24 465-488 26-49 (213)
363 PRK14237 phosphate transporter 96.5 0.13 2.9E-06 53.6 17.4 33 458-490 36-69 (267)
364 PRK10261 glutathione transport 96.5 0.04 8.8E-07 64.7 14.9 45 578-630 479-523 (623)
365 PRK10744 pstB phosphate transp 96.5 0.038 8.2E-07 57.4 13.2 34 457-490 28-62 (260)
366 PRK15439 autoinducer 2 ABC tra 96.5 0.013 2.9E-07 67.1 10.6 33 457-489 26-59 (510)
367 TIGR03015 pepcterm_ATPase puta 96.5 0.014 3.1E-07 60.7 10.0 51 464-515 39-91 (269)
368 cd03250 ABCC_MRP_domain1 Domai 96.5 0.035 7.7E-07 55.3 12.4 33 458-490 21-54 (204)
369 TIGR00972 3a0107s01c2 phosphat 96.5 0.025 5.4E-07 58.3 11.6 32 458-489 17-49 (247)
370 PRK14274 phosphate ABC transpo 96.5 0.12 2.6E-06 53.7 16.8 33 458-490 28-61 (259)
371 PLN03140 ABC transporter G fam 96.5 0.038 8.3E-07 70.6 15.3 35 456-490 894-929 (1470)
372 cd03231 ABC_CcmA_heme_exporter 96.5 0.046 1E-06 54.4 13.1 32 458-489 16-48 (201)
373 PRK14256 phosphate ABC transpo 96.5 0.13 2.8E-06 53.1 16.9 33 458-490 20-53 (252)
374 PRK13644 cbiO cobalt transport 96.5 0.013 2.8E-07 61.5 9.5 34 457-490 17-51 (274)
375 PRK14247 phosphate ABC transpo 96.5 0.035 7.6E-07 57.3 12.6 33 458-490 19-52 (250)
376 COG1132 MdlB ABC-type multidru 96.4 0.043 9.3E-07 63.9 14.6 175 457-666 344-540 (567)
377 TIGR03574 selen_PSTK L-seryl-t 96.4 0.018 3.9E-07 59.5 10.3 36 469-505 1-36 (249)
378 PRK00889 adenylylsulfate kinas 96.4 0.0046 1E-07 60.1 5.5 40 465-505 2-41 (175)
379 cd03253 ABCC_ATM1_transporter 96.4 0.02 4.3E-07 58.5 10.5 34 458-491 17-51 (236)
380 TIGR03269 met_CoM_red_A2 methy 96.4 0.04 8.7E-07 63.3 14.0 60 578-663 443-502 (520)
381 PRK14242 phosphate transporter 96.4 0.17 3.7E-06 52.2 17.5 32 458-489 22-54 (253)
382 PRK12608 transcription termina 96.4 0.017 3.7E-07 62.4 10.1 57 453-509 119-176 (380)
383 PRK09376 rho transcription ter 96.4 0.022 4.8E-07 61.8 10.9 46 450-495 152-197 (416)
384 TIGR03415 ABC_choXWV_ATP choli 96.4 0.027 5.9E-07 61.7 11.9 44 578-629 180-223 (382)
385 PRK10762 D-ribose transporter 96.4 0.026 5.7E-07 64.5 12.3 34 457-490 19-53 (501)
386 COG4987 CydC ABC-type transpor 96.4 0.038 8.3E-07 61.4 12.8 176 457-666 353-549 (573)
387 KOG0065 Pleiotropic drug resis 96.4 0.021 4.5E-07 69.7 11.6 152 457-632 806-992 (1391)
388 PRK09435 membrane ATPase/prote 96.4 0.021 4.6E-07 61.2 10.7 40 468-508 57-96 (332)
389 PRK14245 phosphate ABC transpo 96.4 0.12 2.6E-06 53.2 16.2 25 464-488 26-50 (250)
390 PRK13540 cytochrome c biogenes 96.4 0.043 9.4E-07 54.6 12.3 33 457-489 16-49 (200)
391 PRK14240 phosphate transporter 96.4 0.077 1.7E-06 54.7 14.6 32 458-489 19-51 (250)
392 TIGR02868 CydC thiol reductant 96.4 0.032 6.8E-07 64.3 12.9 155 457-629 350-527 (529)
393 TIGR00956 3a01205 Pleiotropic 96.4 0.062 1.3E-06 68.8 16.5 34 457-490 76-110 (1394)
394 PF08273 Prim_Zn_Ribbon: Zinc- 96.4 0.0023 5E-08 45.7 2.1 32 140-178 2-33 (40)
395 PRK09183 transposase/IS protei 96.4 0.0047 1E-07 64.2 5.4 40 464-504 99-138 (259)
396 PRK14257 phosphate ABC transpo 96.4 0.095 2E-06 56.5 15.6 34 457-490 97-131 (329)
397 PRK07773 replicative DNA helic 96.4 0.0047 1E-07 75.3 6.2 60 646-708 822-883 (886)
398 PRK14269 phosphate ABC transpo 96.4 0.078 1.7E-06 54.6 14.5 33 457-489 17-50 (246)
399 PRK04017 hypothetical protein; 96.4 0.0092 2E-07 54.6 6.5 69 293-380 22-91 (132)
400 PRK13543 cytochrome c biogenes 96.4 0.023 5E-07 57.2 10.2 27 464-490 34-60 (214)
401 PRK11174 cysteine/glutathione 96.4 0.026 5.6E-07 66.0 12.1 172 457-664 365-558 (588)
402 cd03254 ABCC_Glucan_exporter_l 96.4 0.022 4.8E-07 57.8 10.2 35 457-491 18-53 (229)
403 TIGR03797 NHPM_micro_ABC2 NHPM 96.3 0.026 5.7E-07 67.2 12.3 170 457-664 468-659 (686)
404 cd03252 ABCC_Hemolysin The ABC 96.3 0.017 3.7E-07 59.1 9.3 34 458-491 18-52 (237)
405 TIGR00956 3a01205 Pleiotropic 96.3 0.045 9.7E-07 70.0 14.9 35 457-491 778-813 (1394)
406 PRK08939 primosomal protein Dn 96.3 0.042 9.1E-07 58.5 12.5 37 468-505 157-193 (306)
407 TIGR01186 proV glycine betaine 96.3 0.065 1.4E-06 58.4 14.2 33 458-490 9-42 (363)
408 PRK14236 phosphate transporter 96.3 0.17 3.7E-06 52.9 17.1 26 464-489 48-73 (272)
409 cd03223 ABCD_peroxisomal_ALDP 96.3 0.054 1.2E-06 52.2 12.2 33 458-490 17-50 (166)
410 PRK13538 cytochrome c biogenes 96.3 0.055 1.2E-06 54.0 12.5 33 458-490 17-50 (204)
411 PRK09700 D-allose transporter 96.3 0.024 5.1E-07 65.1 11.2 33 458-490 21-54 (510)
412 TIGR00767 rho transcription te 96.3 0.017 3.7E-07 62.8 9.3 62 454-515 155-220 (415)
413 PRK14273 phosphate ABC transpo 96.3 0.16 3.5E-06 52.5 16.3 33 458-490 23-56 (254)
414 cd03244 ABCC_MRP_domain2 Domai 96.3 0.042 9.1E-07 55.5 11.7 34 457-490 19-53 (221)
415 PF00270 DEAD: DEAD/DEAH box h 96.3 0.042 9.2E-07 52.5 11.2 142 466-629 13-160 (169)
416 PRK14270 phosphate ABC transpo 96.3 0.16 3.6E-06 52.3 16.2 32 458-489 20-52 (251)
417 COG1135 AbcC ABC-type metal io 96.3 0.12 2.7E-06 53.9 14.8 158 454-629 18-200 (339)
418 PRK10636 putative ABC transpor 96.3 0.044 9.4E-07 64.6 13.3 34 458-491 328-362 (638)
419 PRK09580 sufC cysteine desulfu 96.3 0.065 1.4E-06 55.2 13.2 33 458-490 17-50 (248)
420 PRK15439 autoinducer 2 ABC tra 96.3 0.043 9.4E-07 62.9 13.0 32 458-489 279-311 (510)
421 smart00534 MUTSac ATPase domai 96.2 0.067 1.5E-06 52.6 12.6 31 469-499 1-32 (185)
422 cd03264 ABC_drug_resistance_li 96.2 0.047 1E-06 54.7 11.8 32 457-489 15-47 (211)
423 cd01128 rho_factor Transcripti 96.2 0.014 3.1E-07 60.0 8.1 59 457-515 6-68 (249)
424 KOG0744 AAA+-type ATPase [Post 96.2 0.005 1.1E-07 63.9 4.6 124 464-629 174-305 (423)
425 PRK14262 phosphate ABC transpo 96.2 0.052 1.1E-06 56.0 12.4 32 458-489 19-51 (250)
426 PRK14268 phosphate ABC transpo 96.2 0.081 1.8E-06 54.9 13.8 32 458-489 28-60 (258)
427 KOG0066 eIF2-interacting prote 96.2 0.062 1.3E-06 58.0 12.8 151 449-633 590-764 (807)
428 PF13207 AAA_17: AAA domain; P 96.2 0.0059 1.3E-07 55.2 4.6 29 469-501 1-29 (121)
429 COG3839 MalK ABC-type sugar tr 96.2 0.0079 1.7E-07 64.2 6.2 25 464-488 26-50 (338)
430 COG2274 SunT ABC-type bacterio 96.2 0.024 5.2E-07 66.8 10.8 176 457-666 488-684 (709)
431 PF02456 Adeno_IVa2: Adenoviru 96.2 0.015 3.3E-07 60.1 7.9 146 469-629 89-243 (369)
432 cd03284 ABC_MutS1 MutS1 homolo 96.2 0.016 3.4E-07 58.6 8.0 26 468-493 31-56 (216)
433 COG4674 Uncharacterized ABC-ty 96.2 0.0063 1.4E-07 59.0 4.8 49 454-503 17-66 (249)
434 cd03248 ABCC_TAP TAP, the Tran 96.2 0.031 6.6E-07 56.7 10.2 34 457-490 29-63 (226)
435 TIGR02857 CydD thiol reductant 96.2 0.032 6.9E-07 64.3 11.6 44 457-501 337-381 (529)
436 COG1125 OpuBA ABC-type proline 96.2 0.096 2.1E-06 53.2 13.1 163 454-629 13-194 (309)
437 TIGR01846 type_I_sec_HlyB type 96.2 0.031 6.7E-07 66.7 11.7 174 458-664 473-666 (694)
438 PF01695 IstB_IS21: IstB-like 96.2 0.0072 1.6E-07 59.1 5.3 40 464-504 44-83 (178)
439 COG1158 Rho Transcription term 96.2 0.027 5.7E-07 58.9 9.5 48 464-511 170-218 (422)
440 cd03289 ABCC_CFTR2 The CFTR su 96.2 0.052 1.1E-06 56.9 12.0 35 457-491 19-54 (275)
441 smart00778 Prim_Zn_Ribbon Zinc 96.2 0.0028 6.1E-08 44.4 1.6 32 141-180 3-34 (37)
442 PRK13541 cytochrome c biogenes 96.2 0.063 1.4E-06 53.2 12.0 27 464-490 23-49 (195)
443 PRK14272 phosphate ABC transpo 96.1 0.27 5.9E-06 50.6 17.2 33 458-490 20-53 (252)
444 TIGR02928 orc1/cdc6 family rep 96.1 0.072 1.6E-06 58.2 13.5 53 468-520 41-100 (365)
445 PRK14243 phosphate transporter 96.1 0.065 1.4E-06 55.9 12.5 32 458-489 26-58 (264)
446 PRK14271 phosphate ABC transpo 96.1 0.076 1.7E-06 55.7 13.1 33 458-490 37-70 (276)
447 PRK13695 putative NTPase; Prov 96.1 0.051 1.1E-06 52.8 11.0 34 469-503 2-36 (174)
448 PRK09700 D-allose transporter 96.1 0.032 6.9E-07 64.0 11.1 34 457-490 278-312 (510)
449 cd03280 ABC_MutS2 MutS2 homolo 96.1 0.082 1.8E-06 52.6 12.7 35 464-498 24-60 (200)
450 PRK14260 phosphate ABC transpo 96.1 0.21 4.7E-06 51.7 16.3 33 458-490 23-56 (259)
451 PRK15064 ABC transporter ATP-b 96.1 0.054 1.2E-06 62.5 12.9 32 458-489 335-367 (530)
452 TIGR00362 DnaA chromosomal rep 96.1 0.038 8.3E-07 61.4 11.3 38 468-505 137-175 (405)
453 cd03285 ABC_MSH2_euk MutS2 hom 96.1 0.014 3.1E-07 59.1 7.3 31 464-494 27-57 (222)
454 PRK11288 araG L-arabinose tran 96.1 0.041 9E-07 62.9 11.9 33 458-490 269-302 (501)
455 COG4988 CydD ABC-type transpor 96.1 0.076 1.6E-06 59.8 13.3 178 457-666 336-531 (559)
456 PRK14721 flhF flagellar biosyn 96.1 0.24 5.3E-06 54.8 17.2 62 464-526 188-253 (420)
457 PF09807 DUF2348: Uncharacteri 96.1 0.086 1.9E-06 54.4 12.9 191 455-665 2-211 (249)
458 PRK10982 galactose/methyl gala 96.1 0.028 6.2E-07 64.1 10.4 33 457-489 263-296 (491)
459 cd03287 ABC_MSH3_euk MutS3 hom 96.1 0.019 4.1E-07 58.2 8.0 36 464-499 28-64 (222)
460 PRK11288 araG L-arabinose tran 96.1 0.044 9.5E-07 62.7 11.9 33 457-489 19-52 (501)
461 PRK10982 galactose/methyl gala 96.1 0.028 6.1E-07 64.1 10.3 33 457-489 13-46 (491)
462 PRK14252 phosphate ABC transpo 96.1 0.086 1.9E-06 54.9 13.1 32 458-489 32-64 (265)
463 PRK10762 D-ribose transporter 96.1 0.07 1.5E-06 61.1 13.5 32 458-489 268-300 (501)
464 PRK14246 phosphate ABC transpo 96.1 0.17 3.6E-06 52.6 15.0 33 458-490 26-59 (257)
465 PRK13657 cyclic beta-1,2-gluca 96.0 0.031 6.6E-07 65.3 10.7 32 458-489 351-383 (588)
466 PRK14086 dnaA chromosomal repl 96.0 0.036 7.8E-07 63.7 10.7 38 469-506 316-354 (617)
467 TIGR02203 MsbA_lipidA lipid A 96.0 0.043 9.2E-07 63.9 11.7 173 458-663 348-541 (571)
468 PRK10790 putative multidrug tr 96.0 0.047 1E-06 63.8 12.1 157 457-630 356-534 (592)
469 PRK14265 phosphate ABC transpo 96.0 0.067 1.5E-06 56.1 12.1 31 458-488 36-67 (274)
470 PRK14088 dnaA chromosomal repl 96.0 0.041 8.9E-07 61.7 11.0 37 469-505 132-169 (440)
471 cd02028 UMPK_like Uridine mono 96.0 0.0074 1.6E-07 59.0 4.5 37 469-506 1-37 (179)
472 TIGR00957 MRP_assoc_pro multi 96.0 0.049 1.1E-06 70.4 13.0 175 457-664 1301-1494(1522)
473 COG4618 ArpD ABC-type protease 96.0 0.056 1.2E-06 59.7 11.5 32 458-489 352-384 (580)
474 PF09848 DUF2075: Uncharacteri 96.0 0.057 1.2E-06 58.8 11.8 50 468-518 2-53 (352)
475 PF01637 Arch_ATPase: Archaeal 96.0 0.026 5.6E-07 56.9 8.6 142 466-629 19-164 (234)
476 TIGR00347 bioD dethiobiotin sy 96.0 0.22 4.9E-06 47.7 14.7 31 471-502 2-32 (166)
477 cd01132 F1_ATPase_alpha F1 ATP 96.0 0.053 1.1E-06 56.3 10.7 65 446-511 48-112 (274)
478 TIGR03796 NHPM_micro_ABC1 NHPM 96.0 0.068 1.5E-06 64.0 13.4 172 458-664 495-686 (710)
479 PRK12422 chromosomal replicati 96.0 0.033 7.3E-07 62.4 10.0 36 469-505 143-178 (445)
480 PRK04841 transcriptional regul 96.0 0.093 2E-06 64.5 14.9 58 457-519 21-82 (903)
481 cd03369 ABCC_NFT1 Domain 2 of 96.0 0.031 6.6E-07 55.9 8.9 34 457-490 23-57 (207)
482 COG4172 ABC-type uncharacteriz 96.0 0.084 1.8E-06 56.8 12.2 179 455-666 300-504 (534)
483 PRK09694 helicase Cas3; Provis 96.0 0.12 2.6E-06 62.5 15.1 151 467-629 301-478 (878)
484 PRK13409 putative ATPase RIL; 96.0 0.046 1E-06 63.6 11.4 26 464-489 96-121 (590)
485 PF00931 NB-ARC: NB-ARC domain 96.0 0.054 1.2E-06 56.8 11.1 120 465-631 17-139 (287)
486 PRK13549 xylose transporter AT 95.9 0.062 1.3E-06 61.6 12.3 34 457-490 20-54 (506)
487 cd03281 ABC_MSH5_euk MutS5 hom 95.9 0.037 8E-07 55.8 9.3 33 468-500 30-63 (213)
488 PRK15056 manganese/iron transp 95.9 0.031 6.7E-07 58.6 9.0 33 458-490 23-56 (272)
489 TIGR03375 type_I_sec_LssB type 95.9 0.033 7.1E-07 66.5 10.4 172 458-664 481-674 (694)
490 PRK00149 dnaA chromosomal repl 95.9 0.044 9.6E-07 61.8 10.9 39 468-506 149-188 (450)
491 COG4148 ModC ABC-type molybdat 95.9 0.038 8.1E-07 56.7 9.0 43 579-630 145-188 (352)
492 COG4088 Predicted nucleotide k 95.9 0.0068 1.5E-07 59.2 3.6 33 469-502 3-35 (261)
493 PRK08084 DNA replication initi 95.9 0.01 2.3E-07 60.7 5.3 40 466-506 44-83 (235)
494 PRK06696 uridine kinase; Valid 95.9 0.01 2.3E-07 60.2 5.2 37 468-505 23-59 (223)
495 PHA00520 packaging NTPase P4 95.9 0.058 1.3E-06 55.3 10.3 118 458-630 114-236 (330)
496 PRK07952 DNA replication prote 95.9 0.056 1.2E-06 55.5 10.5 45 468-517 100-144 (244)
497 PRK12678 transcription termina 95.9 0.042 9.2E-07 62.0 10.2 63 449-511 398-461 (672)
498 PRK14275 phosphate ABC transpo 95.9 0.07 1.5E-06 56.3 11.7 32 458-489 55-87 (286)
499 PRK07667 uridine kinase; Provi 95.9 0.011 2.5E-07 58.5 5.3 38 468-506 18-55 (193)
500 TIGR02633 xylG D-xylose ABC tr 95.9 0.087 1.9E-06 60.3 13.3 33 457-489 16-49 (500)
No 1
>PRK08006 replicative DNA helicase; Provisional
Probab=100.00 E-value=2e-41 Score=375.73 Aligned_cols=266 Identities=19% Similarity=0.237 Sum_probs=226.4
Q ss_pred cchhhhhhhcccCCCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHH
Q 005204 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511 (709)
Q Consensus 433 ~~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~ 511 (709)
+++.+++......+...|++|||+.||++++ |.+|+|++|+|+||+|||+|++++|.++|.++|++|+|||+||+.+++
T Consensus 189 ~~~~i~~~~~~~~~~~~Gi~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql 268 (471)
T PRK08006 189 TVARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQI 268 (471)
T ss_pred HHHHHHHHHhcCCCCCCcccCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 3444554443334557899999999999998 999999999999999999999999999997669999999999999999
Q ss_pred HHHHHHHHcCCCccccccCCCCCCCCHHHHHHHHH---HH-hcCcceEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEE
Q 005204 512 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA---WL-SNTFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLVI 586 (709)
Q Consensus 512 ~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~---~l-~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~-~~~lIVI 586 (709)
+.|+++..++++...++.| .+++++|.++.. .+ ....+++ ++.+..++++|.+.+++++.++ ++++|||
T Consensus 269 ~~Rlla~~~~v~~~~i~~~----~l~~~e~~~~~~a~~~~~~~~~l~I--~d~~~~t~~~i~~~~r~~~~~~~~~~lvvI 342 (471)
T PRK08006 269 MMRMLASLSRVDQTRIRTG----QLDDEDWARISGTMGILLEKRNMYI--DDSSGLTPTEVRSRARRIFREHGGLSLIMI 342 (471)
T ss_pred HHHHHHHhcCCCHHHhhcC----CCCHHHHHHHHHHHHHHHhcCCEEE--ECCCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 9999999999999999866 799999987643 34 4444555 2345678999999999988776 6999999
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeC
Q 005204 587 DPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665 (709)
Q Consensus 587 D~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~ 665 (709)
| |++++.......++.++++++++.||.||+++||+||+++| ||..+++.+++|.++|++||++|+|.||+||+|+|+
T Consensus 343 D-YLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~v~~l~R~ 421 (471)
T PRK08006 343 D-YLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRD 421 (471)
T ss_pred c-cHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchhhhhhcCcccccCCEEEEEecc
Confidence 9 99998644333566778999999999999999999999999 999988888999999999999999999999999998
Q ss_pred CCCC--CCCCCeEEEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005204 666 RDPE--AGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 666 ~~~e--~~~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
+..+ ....+.++|+|.|||+|++|.+ .+.|++.++||.+.
T Consensus 422 ~~y~~~~~~~g~~elivaKnR~G~~G~v---~l~f~~~~~~f~~~ 463 (471)
T PRK08006 422 EVYHENSDLKGIAEIIIGKQRNGPIGTV---RLTFNGQWSRFDNY 463 (471)
T ss_pred cccccccCCCCceEEEEecccCCCCceE---EEEEccCcccccCC
Confidence 7332 2234679999999999888775 79999999999875
No 2
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=100.00 E-value=4.9e-42 Score=345.38 Aligned_cols=432 Identities=20% Similarity=0.256 Sum_probs=341.2
Q ss_pred hCCCCHHHHHHccccccCC-CCeeEEEEeEe----cCCE-EEEEE-ee-----cCCCcccc-----cCCCCCcccccccc
Q 005204 228 ERLISAETLRRNRVMQKRH-GHEVVIAFPYW----RNGK-LVNCK-YR-----DFNKKFWQ-----EKDTEKVFYGLDDI 290 (709)
Q Consensus 228 ~RGI~~~~~~~~~~~~~~~-g~~~~i~fP~~----~~G~-lv~~~-~R-----~~~kk~~~-----~~~~~~~lyg~~~i 290 (709)
--.|+.+++.+|.++.... -....+.||.. .++. ..|++ .| .....|-- .+.+-..+||++.+
T Consensus 39 lt~i~~~tl~rf~Vry~~p~~~qp~~~FP~~~~~tp~~~~~~GlK~l~e~~~~~~g~~ye~~~~~~~r~a~~~~fGL~l~ 118 (514)
T KOG2373|consen 39 LTNISFETLARFNVRYQTPTYGQPAILFPRYRGMTPRLRIPMGLKLLREVGDRMEGENYELPDETSVRQAFNGVFGLHLA 118 (514)
T ss_pred cchhhhhhhccccccccCcccCCCccccccccccCccchhhhhhHHHHHhhhccccccCCCCcccchhhhhcceeceeec
Confidence 3456778888888753211 12348999943 2332 23443 12 11122221 12455678898887
Q ss_pred CC-CCeEEEEcChhhHHHHHHhCCceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCcCEEEEEecCChhhHH
Q 005204 291 EG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQA 369 (709)
Q Consensus 291 ~~-~~~viI~EG~~DaLsl~q~g~~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~~~Ivi~~DnD~aG~~ 369 (709)
.. ...++|+-.+.|+|++.++....++|+|.|... ||+ .++++|+.+++||+|+--|...+.
T Consensus 119 ~rrd~~vVltsne~D~lal~~~t~~~t~~LP~g~~~------lP~-----------~~LPyLE~F~~i~fWl~~d~~sw~ 181 (514)
T KOG2373|consen 119 TRRDRSVVLTSNERDALALYEATKALTFALPHGEIL------LPQ-----------LVLPYLEEFDKIYFWLPVDHVSWS 181 (514)
T ss_pred ccccceEEEeecchhHHHHhhhcCceEEEccccccc------CcH-----------HHHHHHHhhheEEEEecccccchH
Confidence 53 567999999999999999987678999998875 664 347999999999999999999999
Q ss_pred HHHHHHHHhCCcceEEEEcCCCCCCCCCCCHHHHHHhcCCCccceeeeccccccccccccccccchhhhhhhcccCCCcc
Q 005204 370 LAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF 449 (709)
Q Consensus 370 aa~~~a~~l~~~~~~iv~~P~~~~~~~~kD~ND~l~~~g~e~l~~~l~~A~~~~~~~l~~~~d~~~~ie~~~~~~~~~~~ 449 (709)
||+.++.+|...+|.+|+ |.+.++.+. ..-.+.-.+..++..|.+..++++.++.++.++|..-+.+ -+.+.
T Consensus 182 aAk~fa~kLn~~rClLvr-p~e~~p~p~------~al~~rlnl~~il~~a~p~~hk~i~sf~~mRe~ilseL~N-~e~v~ 253 (514)
T KOG2373|consen 182 AAKDFASKLNTLRCLLVR-PEERPPEPV------RALDHRLNLNSILNSAVPMRHKGIRSFTDMREGILSELLN-TERVV 253 (514)
T ss_pred HHHHHHhhcCcceEEEEC-CCCCCcchh------hhhcccccHHHHHhhhchhhhhhhhhHHHHHHHHHHHHhh-hhhhh
Confidence 999999999999999999 765544442 2223555788889999999999999999999998877766 46678
Q ss_pred cccc-cchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCcccc
Q 005204 450 GIST-GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 527 (709)
Q Consensus 450 gi~t-g~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i 527 (709)
|+.| .||.|+++++ .++|||++++|++|+|||||+...+++++.| |.+.||.|+|++..++++.|+.+.+|....+
T Consensus 254 G~~WkRFpvLNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~Q-GVnTLwgSFEi~n~rla~~mL~Qyagyrl~d- 331 (514)
T KOG2373|consen 254 GFQWKRFPVLNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQ-GVNTLWGSFEIPNKRLAHWMLVQYAGYRLLD- 331 (514)
T ss_pred ceeehhhhHHHHHhccCCCCceEEEecCCCCCceeEehHhhHHHHhh-hhhheeeeeecchHHHHHHHHHHHccCchHh-
Confidence 8887 6999999999 9999999999999999999999999999999 9999999999999999999999999875432
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhc----CcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHH
Q 005204 528 NYGGSAERMTVEEFEQGKAWLSN----TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 603 (709)
Q Consensus 528 ~~g~~~~~l~~e~~~~~~~~l~~----~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~ 603 (709)
.+.+...|.+. ..++..+ .+...++.+++.|..++.-+++..|||||+..||+...-..++.
T Consensus 332 ------------rl~~y~HWadrFErlplyfmtf--hgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~Drf 397 (514)
T KOG2373|consen 332 ------------RLNSYKHWADRFERLPLYFMTF--HGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMALDRF 397 (514)
T ss_pred ------------hhhhhhHHHHHHhccchHhhhh--cccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhccchh
Confidence 23333344432 2344322 56778999999999999899999999999999987643334566
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEee
Q 005204 604 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 683 (709)
Q Consensus 604 ~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~ 683 (709)
-.++.++..+++||.++||+|.+|.|+||.++ +++.+-+.+.||+...|.||+||.|.+.+.... ++...+.|.||
T Consensus 398 ~~QD~iig~fR~fAT~nn~HvTlVvHPRKed~--d~El~t~s~fGsAkatQEADNVliiQdkrl~~~--rgkkyLqi~KN 473 (514)
T KOG2373|consen 398 HLQDRIIGYFRQFATQNNIHVTLVVHPRKEDG--DTELDTQSFFGSAKATQEADNVLIIQDKRLDRD--RGKKYLQILKN 473 (514)
T ss_pred hhHHHHHHHHHHHhhccceeEEEEecccccCC--CceeeehhhccccccccccccEEEEeecccccc--cchhhhhhhhh
Confidence 67888999999999999999999999999875 678899999999999999999999987664322 34567889887
Q ss_pred eCCCcceeeeEEEEEEccccEEE
Q 005204 684 RNKVVGTIGEAFLSYNRVTGEYM 706 (709)
Q Consensus 684 R~g~~G~~g~~~l~fd~~t~rf~ 706 (709)
|. .|++|..+|.|+.....|+
T Consensus 474 Ry--~Gdvg~~pLEf~kn~ltyS 494 (514)
T KOG2373|consen 474 RY--YGDVGSDPLEFVKNPLTYS 494 (514)
T ss_pred cc--cCcccccceeeccCCcccc
Confidence 76 6899988999998877765
No 3
>PRK08840 replicative DNA helicase; Provisional
Probab=100.00 E-value=5.5e-41 Score=371.54 Aligned_cols=266 Identities=18% Similarity=0.238 Sum_probs=225.8
Q ss_pred cchhhhhhhcccCCCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHH
Q 005204 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511 (709)
Q Consensus 433 ~~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~ 511 (709)
+++.+++......+...|++|||+.||.+++ |.+|+|++|+|+||+|||+|++++|.++|.++|++|+|||+||+.+++
T Consensus 182 ~~~~i~~~~~~~~~~~~gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql 261 (464)
T PRK08840 182 TLERIELLYKTPQDGVTGVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQL 261 (464)
T ss_pred HHHHHHHHHhcCCCCCCCcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHH
Confidence 3444554432223557899999999999998 999999999999999999999999999997669999999999999999
Q ss_pred HHHHHHHHcCCCccccccCCCCCCCCHHHHHHH---HHHH-hcCcceEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEE
Q 005204 512 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG---KAWL-SNTFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLVI 586 (709)
Q Consensus 512 ~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~---~~~l-~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~-~~~lIVI 586 (709)
+.|+++..++++...++.| .+++++|.++ ..++ ....+++ ++.+..++++|+..+++++.++ ++++|||
T Consensus 262 ~~Rlla~~s~v~~~~i~~~----~l~~~e~~~~~~a~~~l~~~~~l~I--~d~~~~ti~~i~~~~r~~~~~~~~~~lvvI 335 (464)
T PRK08840 262 MMRMLASLSRVDQTKIRTG----QLDDEDWARISSTMGILMEKKNMYI--DDSSGLTPTEVRSRARRIAREHGGLSMIMV 335 (464)
T ss_pred HHHHHHhhCCCCHHHHhcC----CCCHHHHHHHHHHHHHHHhcCCEEE--ECCCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 9999999999999988876 7999998876 4555 3334444 2345678999999999998776 5999999
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeC
Q 005204 587 DPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665 (709)
Q Consensus 587 D~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~ 665 (709)
| |++++.......++.+++.++++.||.||+++||+||+++| ||..+++.+++|.++|++||++|+|.||+|++|+|+
T Consensus 336 D-YLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~ 414 (464)
T PRK08840 336 D-YLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRD 414 (464)
T ss_pred c-cHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEecc
Confidence 9 99998644333567788999999999999999999999999 999988888999999999999999999999999998
Q ss_pred CCC--CCCCCCeEEEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005204 666 RDP--EAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 666 ~~~--e~~~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
+.. +....+.++++|.|+|||++|.+ .+.|++.++||.+.
T Consensus 415 ~~y~~~~~~~~~~elivaKnR~G~~G~v---~l~f~~~~~~f~~~ 456 (464)
T PRK08840 415 EVYNPDSPLKGTAEIIIGKQRNGPIGSV---RLTFQGQYSRFDNY 456 (464)
T ss_pred cccCCCcCCCCceEEEEecccCCCCceE---EEEEecCcccccCC
Confidence 742 22334679999999999888775 79999999999875
No 4
>PRK05636 replicative DNA helicase; Provisional
Probab=100.00 E-value=1e-40 Score=372.06 Aligned_cols=264 Identities=18% Similarity=0.260 Sum_probs=227.6
Q ss_pred chhhhhhhcccCCCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHH
Q 005204 434 FDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 512 (709)
Q Consensus 434 ~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~ 512 (709)
+++++++... .+...|++|||+.||++++ |.+|+|++|+|+||+|||+|++++|.++|..+|.+|+|||+||+.++++
T Consensus 232 ~~~i~~~~~~-~~~~~Gi~TG~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~ 310 (505)
T PRK05636 232 MDELEMLSSQ-GGIATGIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIV 310 (505)
T ss_pred HHHHHHHHhC-CCCCCceecChHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHH
Confidence 3445444322 3556899999999999998 9999999999999999999999999999976699999999999999999
Q ss_pred HHHHHHHcCCCccccccCCCCCCCCHHHHHHHHH---HHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccC
Q 005204 513 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA---WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPY 589 (709)
Q Consensus 513 ~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~---~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~ 589 (709)
.|+++..++++...++.| .+++++|.++.+ ++.+..+++. +....++++|+..+++++.++++++|||| |
T Consensus 311 ~R~ls~~s~v~~~~i~~g----~l~~~e~~~~~~a~~~l~~~~l~I~--d~~~~ti~~I~~~~r~~~~~~~~~lvvID-Y 383 (505)
T PRK05636 311 MRLLSAEAEVRLSDMRGG----KMDEDAWEKLVQRLGKIAQAPIFID--DSANLTMMEIRSKARRLKQKHDLKLIVVD-Y 383 (505)
T ss_pred HHHHHHhcCCCHHHHhcC----CCCHHHHHHHHHHHHHHhcCCEEEE--CCCCCCHHHHHHHHHHHHHhcCCCEEEEc-c
Confidence 999999999999999876 799999987654 4555555552 35567899999999999999999999999 9
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCC
Q 005204 590 NELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP 668 (709)
Q Consensus 590 ~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~ 668 (709)
++++.......++.+++.++++.||.||+++||+||+++| ||..+++.+++|.++||+||++|+|.||+||+|+|++..
T Consensus 384 Lql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~vl~l~R~~~y 463 (505)
T PRK05636 384 LQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLLYRPDSQ 463 (505)
T ss_pred hHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEEeecCccccccCCCCCcHHHHhhcccccccCCEEEEEeccccc
Confidence 9988643334567788999999999999999999999999 999988888899999999999999999999999998743
Q ss_pred --CCCCCCeEEEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005204 669 --EAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 669 --e~~~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
+....+.++|+|.|+|||++|.+ .+.|+++++||.+.
T Consensus 464 ~~~~~~~g~~elivaK~RnG~~Gtv---~l~f~~~~~rF~~~ 502 (505)
T PRK05636 464 DKDDERAGEADIILAKHRGGPIDTV---QVAHQLHYSRFVDM 502 (505)
T ss_pred CCccCCCCceEEEEecCCCCCCceE---EEEeecCccccccc
Confidence 22235689999999999888775 79999999999885
No 5
>PRK07004 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.3e-40 Score=369.55 Aligned_cols=253 Identities=19% Similarity=0.226 Sum_probs=222.5
Q ss_pred CCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCc
Q 005204 446 GDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 524 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~ 524 (709)
+...|++|||+.||++++ +++|+|++|+|+||+|||+|+++++.++|..+|.+|+|||+||+.++++.|+++..++++.
T Consensus 191 ~~~~gi~TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~~~v~~ 270 (460)
T PRK07004 191 SDVTGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSVGRLDQ 270 (460)
T ss_pred CCCCCccCCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhhcCCCH
Confidence 456899999999999998 9999999999999999999999999999976699999999999999999999999999999
Q ss_pred cccccCCCCCCCCHHHHHHHH---HHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEccCcccccCCCCCC
Q 005204 525 FEANYGGSAERMTVEEFEQGK---AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLVIDPYNELDHQRPVSQ 600 (709)
Q Consensus 525 ~~i~~g~~~~~l~~e~~~~~~---~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~-~~~lIVID~~~~l~~~~~~~~ 600 (709)
..++.| .+++++|.++. ..+.+..+++ ++.+..++.+|...+++++.+. ++++|||| |++++.......
T Consensus 271 ~~i~~g----~l~~~e~~~~~~a~~~l~~~~l~I--~d~~~~~~~~i~~~~r~l~~~~~~~~lviID-YLql~~~~~~~~ 343 (460)
T PRK07004 271 HRMRTG----RLTDEDWPKLTHAVQKMSEAQLFI--DETGGLNPMELRSRARRLARQCGKLGLIIID-YLQLMSGSSQGE 343 (460)
T ss_pred HHHhcC----CCCHHHHHHHHHHHHHHhcCCEEE--ECCCCCCHHHHHHHHHHHHHhCCCCCEEEEC-hhhhccCCCCCC
Confidence 988876 79999987754 4565555555 2355678899999999998776 49999999 999987543346
Q ss_pred CHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCC--CCCCCCeEE
Q 005204 601 TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP--EAGPIDRVQ 677 (709)
Q Consensus 601 ~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~--e~~~~~~~~ 677 (709)
++.+++.++++.||.||+++||+||+++| ||..+.+.+++|.++|+++|++|+|.||.||+|+|++.. +....+.++
T Consensus 344 ~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~v~~l~R~~~y~~~~~~~g~~e 423 (460)
T PRK07004 344 NRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYNPDSPDKGTAE 423 (460)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcchhhhhcCCEEEEeccccccCCCcCCCCceE
Confidence 78889999999999999999999999999 999888888999999999999999999999999998743 222346799
Q ss_pred EEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005204 678 VCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 678 l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
++|.|||||++|.+ .+.|++.++||.++
T Consensus 424 ~ivaKnR~G~~G~v---~l~f~~~~~~F~~~ 451 (460)
T PRK07004 424 IIIGKQRNGPIGPV---RLTFLGQYTKFDNF 451 (460)
T ss_pred EEEEccCCCCCceE---EEEEecCCCcccCC
Confidence 99999999988875 79999999999885
No 6
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=100.00 E-value=1e-40 Score=346.65 Aligned_cols=249 Identities=24% Similarity=0.330 Sum_probs=208.7
Q ss_pred cccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccc
Q 005204 450 GISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN 528 (709)
Q Consensus 450 gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~ 528 (709)
|++|||+.||++++ +.+|+|++|+|+||+|||+|++|+|.+++.++|.+|+|||+||+.+++..|+++..++++...++
T Consensus 1 Gi~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~ 80 (259)
T PF03796_consen 1 GIPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIR 80 (259)
T ss_dssp SB-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHH
T ss_pred CCCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhh
Confidence 79999999999998 99999999999999999999999999999976799999999999999999999999999999988
Q ss_pred cCCCCCCCCHHHHHHH---HHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHh-cCCcEEEEccCcccccCCCCCCCHHH
Q 005204 529 YGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR-HGVRGLVIDPYNELDHQRPVSQTETE 604 (709)
Q Consensus 529 ~g~~~~~l~~e~~~~~---~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~-~~~~lIVID~~~~l~~~~~~~~~~~~ 604 (709)
.+ .+++++++++ ..++.+..+++.. ....++++|.+.++.+..+ .++++|||| |++++.......++.+
T Consensus 81 ~g----~l~~~e~~~~~~~~~~l~~~~l~i~~--~~~~~~~~i~~~i~~~~~~~~~~~~v~ID-yl~ll~~~~~~~~~~~ 153 (259)
T PF03796_consen 81 SG----DLSDEEFERLQAAAEKLSDLPLYIED--TPSLTIDDIESKIRRLKREGKKVDVVFID-YLQLLKSEDSSDNRRQ 153 (259)
T ss_dssp CC----GCHHHHHHHHHHHHHHHHTSEEEEEE--SSS-BHHHHHHHHHHHHHHSTTEEEEEEE-EGGGSBTSCSSSCCHH
T ss_pred cc----ccCHHHHHHHHHHHHHHhhCcEEEEC--CCCCCHHHHHHHHHHHHhhccCCCEEEec-hHHHhcCCCCCCCHHH
Confidence 76 7888887765 4556555444422 4567899999999999888 889999999 8888876545666788
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCC--CCCCCeEEEEEE
Q 005204 605 YVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE--AGPIDRVQVCVR 681 (709)
Q Consensus 605 ~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e--~~~~~~~~l~v~ 681 (709)
.+..++++||.+|+++||+||+++| +|..+++.+++|+++|++||+.|+|.||+||+|+|++..+ ....+..+|.|.
T Consensus 154 ~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~sg~Ie~~AD~vl~l~r~~~~~~~~~~~~~~~l~v~ 233 (259)
T PF03796_consen 154 EIGEISRELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRESGAIEQDADVVLFLHRDEKYDEDRDDKGEAELIVA 233 (259)
T ss_dssp HHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCSTSSHHHH-SEEEEEEEHCHCHCCSSCTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhhhHHHHHHHhhhhhhccchhhccccCCCCeEEEEEE
Confidence 8999999999999999999999999 9988777778999999999999999999999999987432 223458999999
Q ss_pred eeeCCCcceeeeEEEEEEccccEEEcC
Q 005204 682 KVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 682 K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
|||+|..|. +.+.|+++++||.|+
T Consensus 234 KnR~G~~g~---v~~~f~~~~~~f~~~ 257 (259)
T PF03796_consen 234 KNRNGPTGT---VPLRFNPETSRFTDL 257 (259)
T ss_dssp EESSS--EE---EEEEEETTTTEEEE-
T ss_pred ecCCCCCce---EEEEEECCCCeEeec
Confidence 999987775 479999999999986
No 7
>PRK08760 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.8e-40 Score=369.52 Aligned_cols=266 Identities=18% Similarity=0.224 Sum_probs=227.5
Q ss_pred ccchhhhhhhcccCCCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHH
Q 005204 432 DYFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 510 (709)
Q Consensus 432 d~~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~ 510 (709)
+.++.+++.+.+ .+...|++|||+.||++++ |.+|+|++|+|+||+|||+|++++|.++|.++|++|+|||+||+.++
T Consensus 194 ~~~~~~~~~~~~-~~~~~Gi~TG~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~q 272 (476)
T PRK08760 194 DAFEELRNRFEN-GGNITGLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQ 272 (476)
T ss_pred HHHHHHHHHHhC-CCCCCcccCCcHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHH
Confidence 344555554443 3557899999999999998 99999999999999999999999999999766999999999999999
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCCCHHHHHHH---HHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Q 005204 511 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 587 (709)
Q Consensus 511 ~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~---~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID 587 (709)
++.|+++..++++...++.| .+++++|.++ ..++.+..+++ ++....++++|...+++++.++++++||||
T Consensus 273 l~~Rl~a~~s~i~~~~i~~g----~l~~~e~~~~~~a~~~l~~~~l~I--~d~~~~t~~~I~~~~r~l~~~~~~~lVvID 346 (476)
T PRK08760 273 LAMRLISSNGRINAQRLRTG----ALEDEDWARVTGAIKMLKETKIFI--DDTPGVSPEVLRSKCRRLKREHDLGLIVID 346 (476)
T ss_pred HHHHHHHhhCCCcHHHHhcC----CCCHHHHHHHHHHHHHHhcCCEEE--eCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999988876 7888888765 45566555555 224567899999999999988999999999
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 588 PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 588 ~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
|++++.......++.+++.++++.||.||+++||+||+++| ||..+++.+++|.++|++||++|+|.||+||+|+|++
T Consensus 347 -yLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~ 425 (476)
T PRK08760 347 -YLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIYRDD 425 (476)
T ss_pred -cHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhccchhcCCCEEEEEechh
Confidence 88888644334566778999999999999999999999999 9988888789999999999999999999999999987
Q ss_pred CCC---CCCCCeEEEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005204 667 DPE---AGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 667 ~~e---~~~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
..+ ....+.++|+|.|+|+|++|.+ .|.|+++++||.++
T Consensus 426 ~y~~~~~~~~~~~eliiaKnR~G~~g~~---~l~f~~~~~~f~~~ 467 (476)
T PRK08760 426 YYNKENSPDKGLAEIIIGKHRGGPTGSC---KLKFFGEYTRFDNL 467 (476)
T ss_pred hcccccccCCCceEEEEEccCCCCCceE---EEEEecCCCceecc
Confidence 322 2235679999999999888775 79999999999985
No 8
>PRK05595 replicative DNA helicase; Provisional
Probab=100.00 E-value=5e-40 Score=365.73 Aligned_cols=266 Identities=19% Similarity=0.288 Sum_probs=226.6
Q ss_pred ccchhhhhhhcccCCCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHH
Q 005204 432 DYFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 510 (709)
Q Consensus 432 d~~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~ 510 (709)
++++++++.+.+ .+...|++|||+.||++++ +++|+|++|+|+||+|||+|+++++.++|.++|.+|+|||+||+.++
T Consensus 166 ~~~~~~~~~~~~-~~~~~gi~tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~ 244 (444)
T PRK05595 166 RGFEQIENLFNN-KGETTGVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQ 244 (444)
T ss_pred HHHHHHHHHHhC-CCCCCcccCChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHH
Confidence 344556555443 3556899999999999998 99999999999999999999999999988666999999999999999
Q ss_pred HHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHH---HHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Q 005204 511 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK---AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 587 (709)
Q Consensus 511 ~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~---~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID 587 (709)
++.|+++..++++...++.| .++.++|.++. ..+.+..+++. +....++++|...+++++.++++++||||
T Consensus 245 l~~R~~a~~~~v~~~~~~~~----~l~~~e~~~~~~~~~~l~~~~l~i~--d~~~~t~~~i~~~~r~~~~~~~~~~vvID 318 (444)
T PRK05595 245 LAYKLLCSEANVDMLRLRTG----NLEDKDWENIARASGPLAAAKIFID--DTAGVSVMEMRSKCRRLKIEHGIDMILID 318 (444)
T ss_pred HHHHHHHHhcCCCHHHHhcC----CCCHHHHHHHHHHHHHHhcCCEEEE--CCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999988765 78888887664 34555444442 34567899999999999888999999999
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 588 PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 588 ~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
|++++.......++.+++.++++.||.||+++||+||+++| ||..+++.+++|.++|+++|++|+|.||+||+++|++
T Consensus 319 -ylql~~~~~~~~~r~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~Sg~Ieq~AD~vl~l~r~~ 397 (444)
T PRK05595 319 -YLQLMSGGKGSESRQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADVVMFLYRDE 397 (444)
T ss_pred -HHHhccCCCCCccHHHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhccCCCCCchhhhhhhcccccCCCEEEEEeccc
Confidence 88888644334567788999999999999999999999999 9999888889999999999999999999999999987
Q ss_pred CC--CCCCCCeEEEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005204 667 DP--EAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 667 ~~--e~~~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
.. +....+.++++|.|||+|++|.+ .+.|++.++||.++
T Consensus 398 ~~~~~~~~~~~~e~iv~K~R~G~~g~~---~~~~~~~~~~f~~~ 438 (444)
T PRK05595 398 YYNKETEDKNVAECIIAKQRNGPTGTV---KLAWLGQYSKFGNL 438 (444)
T ss_pred ccccccCCCCceEEEEEccCCCCCceE---EEEEecCCCccccc
Confidence 32 22345789999999999888764 79999999999874
No 9
>PRK06321 replicative DNA helicase; Provisional
Probab=100.00 E-value=5.5e-40 Score=363.80 Aligned_cols=253 Identities=17% Similarity=0.205 Sum_probs=220.6
Q ss_pred CCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCc
Q 005204 446 GDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 524 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~ 524 (709)
+...|++|||+.||++++ +++|+|++|+|+||+|||+|++|+|.++|..+|.+|+|||+||+.++++.|+++..++++.
T Consensus 204 ~~~~Gi~tG~~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~~s~v~~ 283 (472)
T PRK06321 204 PMISGIPTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVES 283 (472)
T ss_pred CCCCccccCcHHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhcCCCH
Confidence 456899999999999998 9999999999999999999999999999976699999999999999999999999999999
Q ss_pred cccccCCCCCCCCHHHHHHHH---HHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCC---C
Q 005204 525 FEANYGGSAERMTVEEFEQGK---AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP---V 598 (709)
Q Consensus 525 ~~i~~g~~~~~l~~e~~~~~~---~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~---~ 598 (709)
.+++.+ .+++++|.++. ..+.+..+++. +.+..++++|+..+++++.++++++|||| |++++.... .
T Consensus 284 ~~i~~~----~l~~~e~~~~~~a~~~l~~~~~~id--d~~~~ti~~i~~~~r~~~~~~~~~lvvID-yLql~~~~~~~~~ 356 (472)
T PRK06321 284 KKISVG----DLSGRDFQRIVSVVNEMQEHTLLID--DQPGLKITDLRARARRMKESYDIQFLIID-YLQLLSGSGNLRN 356 (472)
T ss_pred HHhhcC----CCCHHHHHHHHHHHHHHHcCCEEEe--CCCCCCHHHHHHHHHHHHHhcCCCEEEEc-chHHcCCCCccCC
Confidence 988866 78888888764 44555565652 34566899999999999999999999999 888886321 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCC-CCCCCeE
Q 005204 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE-AGPIDRV 676 (709)
Q Consensus 599 ~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e-~~~~~~~ 676 (709)
..++.+++.++++.||.||+++||+||+++| ||+.+++.+++|.++|++||++|+|.||.|++|+|++..+ +...+.+
T Consensus 357 ~~~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLReSG~IEqdAD~v~~l~R~~~y~~~~~~~~~ 436 (472)
T PRK06321 357 SESRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIEQDSDLVMFLLRREYYDPNDKPGTA 436 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHHhhcccccccCCEEEEEechhhcCCcCCCCce
Confidence 3456678999999999999999999999999 9999888889999999999999999999999999976432 1234689
Q ss_pred EEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005204 677 QVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 677 ~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
+|+|.|||+|++|.+ .+.|++++.||.+.
T Consensus 437 elivaKnR~G~~G~v---~l~f~~~~~~f~~~ 465 (472)
T PRK06321 437 ELIVAKNRHGSIGSV---PLVFEKEFARFRNY 465 (472)
T ss_pred EEEEEecCCCCCceE---EEEEecCCCcccCc
Confidence 999999999888764 79999999999875
No 10
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4e-40 Score=353.54 Aligned_cols=266 Identities=23% Similarity=0.324 Sum_probs=238.0
Q ss_pred cccchhhhhhhcccCCCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHH
Q 005204 431 RDYFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 509 (709)
Q Consensus 431 ~d~~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~ 509 (709)
.+.++++++.+.+. + ..|++|||+.||.+++ |++|+|++++|+||.|||+||+++|.++|...+.+|++||+||+.+
T Consensus 161 ~~~~~~i~~~~~~~-~-~~Gi~tgf~~LD~~t~G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~e 238 (435)
T COG0305 161 KETMDEIEARFENG-G-LIGVPTGFTDLDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSEE 238 (435)
T ss_pred HHHHHHHHHHhccC-C-CcccccCchhhHHHhcCCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCCHH
Confidence 34567777777653 3 8999999999999999 9999999999999999999999999999998789999999999999
Q ss_pred HHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHH---HHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 005204 510 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVI 586 (709)
Q Consensus 510 ~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~---~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVI 586 (709)
+++.|+++..++++...++.| .+++++|+++ ...+++..+++ ++.+..++.+|+..+++++.++++++|+|
T Consensus 239 ql~~R~Ls~~s~v~~~kirtg----~l~~~d~~~l~~a~~~l~~~~i~I--dD~~~~si~eir~~aRrlk~~~~l~~i~i 312 (435)
T COG0305 239 QLVMRLLSSESGIESSKLRTG----RLSDDEWERLIKAASELSEAPIFI--DDTPGLTITEIRSKARRLKLKHNLGLIVI 312 (435)
T ss_pred HHHHHhhccccccchhccccc----cccHHHHHHHHHHHHHHhhCCeee--cCCCcCCHHHHHHHHHHHHHhcCccEEEE
Confidence 999999999999999999987 7899999876 45566666665 34667789999999999999999999999
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeC
Q 005204 587 DPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665 (709)
Q Consensus 587 D~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~ 665 (709)
| |.+++.+.....++.+++.++++.||.||++++|+|++++| +|..+.|.+++|.++|+|+|++|+|.||.|++++|+
T Consensus 313 D-YLqLm~~~~~~~~r~qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~R~dkrP~lSDLRESGsIEQDAD~VmflyRd 391 (435)
T COG0305 313 D-YLQLMTGGKKSENRKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLRESGALEQDADIVIFLHRD 391 (435)
T ss_pred E-EEEeecccccchhHHHHHHHHHHHHHHHHHhcCCcEEehhhhcccchhccccCCccccCccCCchhhhCCEEEEEech
Confidence 9 99999876555778899999999999999999999999999 999999999999999999999999999999999998
Q ss_pred CCC--CCCCCCeEEEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005204 666 RDP--EAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 666 ~~~--e~~~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
+.. +....+.++++|.|+|||++|++ .|.|+++..+|.+.
T Consensus 392 e~y~~~~~~~g~aeiIi~K~RnGp~GtV---~l~f~~~~~~F~~~ 433 (435)
T COG0305 392 EAYLKDTPDRGEAEVIVAKNRNGPTGTV---KLAFDPQFTKFKNL 433 (435)
T ss_pred hhccCCCCCCceEEEEEEeccCCCCceE---EEEEeccccccccc
Confidence 843 23345799999999999999887 59999999999864
No 11
>PRK06904 replicative DNA helicase; Validated
Probab=100.00 E-value=1.5e-39 Score=361.33 Aligned_cols=254 Identities=17% Similarity=0.213 Sum_probs=218.7
Q ss_pred CCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCc
Q 005204 446 GDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 524 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~ 524 (709)
+...|++|||+.||++++ |++|+|++|+|+||+|||+|++++|.++|..+|.+|+|||+||+.++++.|+++..++++.
T Consensus 199 ~~~~Gi~TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~ 278 (472)
T PRK06904 199 NGVTGVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASLSRVDQ 278 (472)
T ss_pred CCCCCccCChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhCCCCH
Confidence 567899999999999998 9999999999999999999999999999976699999999999999999999999999999
Q ss_pred cccccCCCCCCCCHHHHHHHH---HHHhc-CcceEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEccCcccccCCCCC
Q 005204 525 FEANYGGSAERMTVEEFEQGK---AWLSN-TFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLVIDPYNELDHQRPVS 599 (709)
Q Consensus 525 ~~i~~g~~~~~l~~e~~~~~~---~~l~~-~~~~i~~~~~~~~~i~~i~~~i~~~~~~~-~~~lIVID~~~~l~~~~~~~ 599 (709)
..++.|. .++.++|.++. ..+.. ..+++ ++.+..++++|++.++++.++. ++++|||| |++++......
T Consensus 279 ~~i~~g~---~l~~~e~~~~~~a~~~l~~~~~l~I--~d~~~~t~~~i~~~~r~~~~~~~~~~lvvID-YLqli~~~~~~ 352 (472)
T PRK06904 279 TKIRTGQ---NLDQQDWAKISSTVGMFKQKPNLYI--DDSSGLTPTELRSRARRVYRENGGLSLIMVD-YLQLMRAPGFE 352 (472)
T ss_pred HHhccCC---CCCHHHHHHHHHHHHHHhcCCCEEE--ECCCCCCHHHHHHHHHHHHHhCCCCCEEEEe-cHHhcCCCCCC
Confidence 9887651 58889987764 44543 33444 2245678999999999887765 69999999 99998754323
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCC--C-CCCe
Q 005204 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA--G-PIDR 675 (709)
Q Consensus 600 ~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~--~-~~~~ 675 (709)
.++..+++++++.||.||+++||+||+++| ||..+++.+++|.++||+||++|+|.||+|++|+|++..+. . ..+.
T Consensus 353 ~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~~~~ 432 (472)
T PRK06904 353 DNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLIMFIYRDEVYNETTEDNKGV 432 (472)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCeEEEEEecCchhhccCCCCCchHHHhhcCccccCCcEEEEEeccccccCccccCCCc
Confidence 567778999999999999999999999999 99998888899999999999999999999999999863221 1 2467
Q ss_pred EEEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005204 676 VQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 676 ~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
++|+|.|||+|++|.+ .+.|++.++||.+.
T Consensus 433 ~elivaKnR~G~~G~v---~l~f~~~~~~f~~~ 462 (472)
T PRK06904 433 AEIIIGKQRNGPIGRV---RLAFQGQYSRFDNL 462 (472)
T ss_pred eEEEEeccCCCCCceE---EEEEccCCCCcccc
Confidence 9999999999888775 79999999999875
No 12
>PRK06749 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.7e-39 Score=357.00 Aligned_cols=254 Identities=17% Similarity=0.214 Sum_probs=218.0
Q ss_pred CCCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCC
Q 005204 445 SGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 523 (709)
Q Consensus 445 ~~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~ 523 (709)
.+...|++|||+.||++++ |++|+|++|+|+||+|||+|++++|.++|.+ |.+|+|||+||+.+++..|+++..++++
T Consensus 163 ~~~~~Gi~TG~~~LD~~t~Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~-g~~v~~fSlEMs~~ql~~R~ls~~~~i~ 241 (428)
T PRK06749 163 AKEITGIETGYTSLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAAKS-GAAVGLFSLEMSSKQLLKRMASCVGEVS 241 (428)
T ss_pred CCCCCCccCCcHHHHHHhCCCCCCcEEEEEeCCCCCchHHHHHHHHHHHhc-CCCEEEEEeeCCHHHHHHHHHHhccCCC
Confidence 4567899999999999998 9999999999999999999999999999976 9999999999999999999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHH---HHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEccCcccccCC-C
Q 005204 524 FFEANYGGSAERMTVEEFEQGK---AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG--VRGLVIDPYNELDHQR-P 597 (709)
Q Consensus 524 ~~~i~~g~~~~~l~~e~~~~~~---~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~--~~lIVID~~~~l~~~~-~ 597 (709)
...++.+ ...++.++|.++. ..+.+..+++ ++....++++|.+.+++++.+++ +.+|||| |++++... .
T Consensus 242 ~~~l~~~--~~~l~~~e~~~~~~a~~~l~~~~i~i--~d~~~~t~~~I~~~~r~~~~~~~~~~~lvvID-yLqli~~~~~ 316 (428)
T PRK06749 242 GGRLKNP--KHRFAMEDWEKVSKAFAEIGELPLEI--YDNAGVTVQDIWMQTRKLKRKHGDKKILIIVD-YLQLITGDPK 316 (428)
T ss_pred HHHHhcC--cccCCHHHHHHHHHHHHHHhcCCEEE--ECCCCCCHHHHHHHHHHHHHhcCCCCcEEEEe-ChhhcCCCCC
Confidence 9888753 1257888886654 4555544444 23567789999999999988877 4599999 88988643 2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCC--CCCCCC
Q 005204 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP--EAGPID 674 (709)
Q Consensus 598 ~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~--e~~~~~ 674 (709)
...++.+++.++++.||.||+++||+||+++| ||..+++.+++|.++|+++|++|+|.||.|++|+|++.. +....+
T Consensus 317 ~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~SG~IEqdAD~vl~l~R~~~y~~~~~~~~ 396 (428)
T PRK06749 317 HKGNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYREDYYDKETMQKE 396 (428)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEeecccccccccCCC
Confidence 23567788999999999999999999999999 999988888999999999999999999999999998743 222346
Q ss_pred eEEEEEEeeeCCCcceeeeEEEEEEccccEEEc
Q 005204 675 RVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 707 (709)
Q Consensus 675 ~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~ 707 (709)
.++|+|.|+|||++|.+ .+.|++.++||.+
T Consensus 397 ~~eliiaKnR~G~~G~v---~~~f~~~~~~f~~ 426 (428)
T PRK06749 397 MTEIHVAKHRNGPVGSF---KLRFLKEFGRFVE 426 (428)
T ss_pred ceEEEEecCCCCCCceE---EEEEecCcccccC
Confidence 79999999999888774 7999999999986
No 13
>PRK08506 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.6e-39 Score=362.19 Aligned_cols=252 Identities=19% Similarity=0.241 Sum_probs=216.8
Q ss_pred CCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCc
Q 005204 446 GDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 524 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~ 524 (709)
....|++|||+.||++++ |++|+|++|+|+||+|||+|++++|.+++.+ |.+|+|||+||+.++++.|+++..++++.
T Consensus 170 ~~~~Gi~TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~-g~~V~~fSlEMs~~ql~~Rlla~~s~v~~ 248 (472)
T PRK08506 170 KDIIGLDTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQ-DKGVAFFSLEMPAEQLMLRMLSAKTSIPL 248 (472)
T ss_pred CCCCcccCChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhc-CCcEEEEeCcCCHHHHHHHHHHHhcCCCH
Confidence 456899999999999998 9999999999999999999999999999876 99999999999999999999999999999
Q ss_pred cccccCCCCCCCCHHHHHHH---HHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEccCcccccCCCCCC
Q 005204 525 FEANYGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLVIDPYNELDHQRPVSQ 600 (709)
Q Consensus 525 ~~i~~g~~~~~l~~e~~~~~---~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~-~~~lIVID~~~~l~~~~~~~~ 600 (709)
..++.| .+++++|.++ ...+.+..+++. +.+..++++|.+.+++++.++ ++++|||| |++++.......
T Consensus 249 ~~i~~~----~l~~~e~~~~~~a~~~l~~~~l~I~--d~~~~ti~~I~~~~r~l~~~~~~~~lvvID-yLql~~~~~~~~ 321 (472)
T PRK08506 249 QNLRTG----DLDDDEWERLSDACDELSKKKLFVY--DSGYVNIHQVRAQLRKLKSQHPEIGLAVID-YLQLMSGSGNFK 321 (472)
T ss_pred HHHhcC----CCCHHHHHHHHHHHHHHHcCCeEEE--CCCCCCHHHHHHHHHHHHHhCCCCCEEEEc-ChhhccCCCCCC
Confidence 998876 7899888765 455655555552 245678999999999988765 69999999 888886543335
Q ss_pred CHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCC--------C
Q 005204 601 TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA--------G 671 (709)
Q Consensus 601 ~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~--------~ 671 (709)
++.+++..+++.||.||+++||+||+++| ||..+.+.+++|.++|++||++|+|.||+||+|+|++..+. .
T Consensus 322 ~r~~ev~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~~~~~~~~~~~ 401 (472)
T PRK08506 322 DRHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDDVYKEREEKEKEKK 401 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCcEEEEeecCcchhhccCCCCChHHhhcchhhhhcCCEEEEEecccccccccccccccc
Confidence 67788999999999999999999999999 99988777899999999999999999999999999852110 0
Q ss_pred --C--------------CCeEEEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005204 672 --P--------------IDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 672 --~--------------~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
. .+.++|+|.|||+|++|.+ .+.|++++.||.+.
T Consensus 402 ~~~~g~~~~~~~~~~~~~~~~eliiaKnR~G~~G~v---~l~f~~~~~~f~~~ 451 (472)
T PRK08506 402 AKKEGKEERRIHFQNKSIEEAEIIIGKNRNGPTGTV---KLRFQKEFTRFVDK 451 (472)
T ss_pred cccccccccccccccccccceEEEEecCCCCCCceE---EEEEecCCccccCC
Confidence 0 1248999999999887765 79999999999885
No 14
>PRK09165 replicative DNA helicase; Provisional
Probab=100.00 E-value=2.1e-39 Score=363.11 Aligned_cols=254 Identities=22% Similarity=0.289 Sum_probs=219.7
Q ss_pred CCCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHh--------------cCCeEEEEECCCCHH
Q 005204 445 SGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEH--------------AGWKFVLCSMENKVR 509 (709)
Q Consensus 445 ~~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~--------------~g~~Vly~SlE~~~~ 509 (709)
.+...|++|||+.||++++ +.+|+|++|+|+||+|||+|++++|.++|.+ +|.+|+|||+||+.+
T Consensus 194 ~~~~~gi~TG~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ 273 (497)
T PRK09165 194 DGHLSGISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAE 273 (497)
T ss_pred CCCCCcccCChHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHH
Confidence 3567899999999999998 9999999999999999999999999999975 278999999999999
Q ss_pred HHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHHH---HHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEE
Q 005204 510 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA---WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVI 586 (709)
Q Consensus 510 ~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~---~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVI 586 (709)
+++.|+++..++++...++.| .++.++|.++.+ .+....+++. +.+..++++|...+++++.++++++|||
T Consensus 274 ql~~R~la~~s~v~~~~i~~~----~l~~~e~~~l~~a~~~l~~~~l~I~--d~~~~ti~~i~~~ir~l~~~~~~~lvvI 347 (497)
T PRK09165 274 QLATRILSEQSEISSSKIRRG----KISEEDFEKLVDASQELQKLPLYID--DTPALSISQLRARARRLKRQHGLDLLVV 347 (497)
T ss_pred HHHHHHHHHhcCCCHHHHhcC----CCCHHHHHHHHHHHHHHhcCCeEEe--CCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999988876 799999887644 4555555553 3456789999999999998999999999
Q ss_pred ccCcccccCCC--CCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEe
Q 005204 587 DPYNELDHQRP--VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 663 (709)
Q Consensus 587 D~~~~l~~~~~--~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~ 663 (709)
| |++++.... ...++.++++.+++.||.||+++||+||+++| ||..+++.+++|.++|++||++|+|.||+||+|+
T Consensus 348 D-yLqli~~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 426 (497)
T PRK09165 348 D-YLQLIRGSSKRSSDNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGSIEQDADVVMFVY 426 (497)
T ss_pred c-chHhccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhccCCCCCchhhhhhccchhccCCEEEEEe
Confidence 9 888876432 23556678999999999999999999999999 9999888889999999999999999999999999
Q ss_pred eCCCCCC-------------------CCCCeEEEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005204 664 RNRDPEA-------------------GPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 664 r~~~~e~-------------------~~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
|++..+. ...+.++|+|.|||+|++|.+ .+.|++.++||.++
T Consensus 427 R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ivaKnR~G~~g~~---~~~f~~~~~~f~~~ 487 (497)
T PRK09165 427 REEYYLKRKEPREGTPKHEEWQEKMEKVHNKAEVIIAKQRHGPTGTV---KLAFESEFTRFGDL 487 (497)
T ss_pred ehhhhccccccccccchhhhhhhhhcccCCceEEEEeccCCCCCeeE---EEEEecCCCcccCc
Confidence 9753210 013679999999999888765 79999999999885
No 15
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=100.00 E-value=4.4e-39 Score=358.73 Aligned_cols=265 Identities=22% Similarity=0.306 Sum_probs=223.4
Q ss_pred cchhhhhhhcccCCCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHH
Q 005204 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511 (709)
Q Consensus 433 ~~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~ 511 (709)
+++.+++...+ .+...|++|||+.||++++ +++|+|++|+|+||+|||+|++|++.++|..+|.+|+|||+||+++++
T Consensus 161 ~~~~~~~~~~~-~~~~~gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 161 TVEEIEELYER-GGGITGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred HHHHHHHHHhC-CCCCCcccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 34445544433 3457899999999999998 999999999999999999999999999998669999999999999999
Q ss_pred HHHHHHHHcCCCccccccCCCCCCCCHHHHHHH---HHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEcc
Q 005204 512 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDP 588 (709)
Q Consensus 512 ~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~---~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~ 588 (709)
+.|+++..++++...++.| .++++++.+. ...+.+..+++. +.+..++++|+..+++++.++++++||||
T Consensus 240 ~~R~~~~~~~v~~~~~~~g----~l~~~~~~~~~~a~~~l~~~~l~i~--d~~~~~~~~i~~~i~~~~~~~~~~~vvID- 312 (434)
T TIGR00665 240 AMRMLSSESRVDSQKLRTG----KLSDEDWEKLTSAAGKLSEAPLYID--DTPGLTITELRAKARRLKREHGLGLIVID- 312 (434)
T ss_pred HHHHHHHhcCCCHHHhccC----CCCHHHHHHHHHHHHHHhcCCEEEE--CCCCCCHHHHHHHHHHHHHhcCCCEEEEc-
Confidence 9999999999999888766 6888888655 455655555542 24556899999999999999999999999
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCC
Q 005204 589 YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD 667 (709)
Q Consensus 589 ~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~ 667 (709)
|++++.......++..++..+++.|+.||+++||+||+++| ||..+.+.+++|.++|++||+.|+|.||+||+|+|++.
T Consensus 313 ~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~Sg~ieq~aD~vi~l~r~~~ 392 (434)
T TIGR00665 313 YLQLMSGSGRSENRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEY 392 (434)
T ss_pred chHhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhccchhhcCCEEEEeccccc
Confidence 66776543223456678899999999999999999999999 99887777889999999999999999999999999873
Q ss_pred --CCCCCCCeEEEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005204 668 --PEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 668 --~e~~~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
++....+.++|+|.|+|+|++|. +.+.||+.++||.|.
T Consensus 393 ~~~~~~~~~~~~l~v~KnR~G~~g~---~~l~~~~~~~~f~~~ 432 (434)
T TIGR00665 393 YNPDSEDKGIAEIIIAKQRNGPTGT---VKLAFQGEYTRFENL 432 (434)
T ss_pred cCCCcCCCCceEEEEecCCCCCCCe---EEEEEecCCCcccCC
Confidence 22233567999999999988776 479999999999985
No 16
>PHA02542 41 41 helicase; Provisional
Probab=100.00 E-value=4.7e-39 Score=356.05 Aligned_cols=267 Identities=16% Similarity=0.193 Sum_probs=224.7
Q ss_pred ccccchhhhhhhcccCCCcccccccchhhhhhh-c-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005204 430 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELY-N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 430 ~~d~~~~ie~~~~~~~~~~~gi~tg~~~LD~ll-~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
+.++++.++++.........|++|||+.||.++ | +.+|+|++|+|+||+|||+|++++|.+++.+ |.+|+|||+||+
T Consensus 151 ~~~~~~~ie~~~~~~~~~~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~-g~~Vl~fSLEM~ 229 (473)
T PHA02542 151 GHDYFEDYEERYDSYQSKANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQ-GYNVLYISMEMA 229 (473)
T ss_pred HHHHHHHHHHHHhhccCCCCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEEeccCC
Confidence 355667777754322244789999999999999 6 9999999999999999999999999999965 999999999999
Q ss_pred HHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHHHHHh---cCcceEEecCCCCCCHHHHHHHHHHHHHhcC--Cc
Q 005204 508 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS---NTFSLIRCENDSLPSIKWVLDLAKAAVLRHG--VR 582 (709)
Q Consensus 508 ~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~---~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~--~~ 582 (709)
.++++.|+++..++++...++ .+++++|.+....+. ...+++...+.+..++.+|...++++..+.+ ++
T Consensus 230 ~~ql~~Rl~a~~~~i~~~~l~------~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~d 303 (473)
T PHA02542 230 EEVIAKRIDANLLDVSLDDID------DLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPD 303 (473)
T ss_pred HHHHHHHHHHHHcCCCHHHHh------hcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999998875 378888877654442 2233332333566788999999999887666 99
Q ss_pred EEEEccCcccccCC---CCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccce
Q 005204 583 GLVIDPYNELDHQR---PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDN 658 (709)
Q Consensus 583 lIVID~~~~l~~~~---~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~ 658 (709)
+|||| |.+++... ....++.++++++++.||.||+++||+||+++| ||..+.+.+ |.++|++||+.|+|.||+
T Consensus 304 lVvID-YLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~d--P~lsDLreSG~IEqdAD~ 380 (473)
T PHA02542 304 VIIVD-YLGICASSRLRVSSENSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDSSD--VDMSDTAESAGLPATADF 380 (473)
T ss_pred EEEEe-chhhccCCcccCCCCChHHHHHHHHHHHHHHHHHhCCeEEEEEeeCccccccCC--CcchhcccccchHhhcCE
Confidence 99999 88988632 123567889999999999999999999999999 999887643 999999999999999999
Q ss_pred EEEEeeCCCCCCCCCCeEEEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005204 659 GIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 659 vl~l~r~~~~e~~~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
||+|+|++..+ ..+.++++|.|||+|++|++|.+.+.|+++++||.++
T Consensus 381 vl~l~r~~~~~--~~~~~eliv~KnR~G~~g~~g~v~l~f~~~~~~F~~~ 428 (473)
T PHA02542 381 MLAVIETEELA--QMGQQLVKQLKSRYGDKNKFNKFLMGVDKGNQRWYDV 428 (473)
T ss_pred EEEEecCcccc--cCCeEEEEEecCCCCCCCCceEEEEEEECCcCccccc
Confidence 99999987542 2368999999999999998899999999999999885
No 17
>PRK05748 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.4e-38 Score=355.05 Aligned_cols=265 Identities=19% Similarity=0.286 Sum_probs=223.8
Q ss_pred cchhhhhhhcccCCCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHH
Q 005204 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511 (709)
Q Consensus 433 ~~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~ 511 (709)
+++.++..... .+...|++|||+.||++++ +++|++++|+|+||+|||+|++|++.++|.++|.+|+|||+||+++++
T Consensus 169 ~~~~l~~~~~~-~~~~~gi~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l 247 (448)
T PRK05748 169 AYDRIEMLHNQ-TGDITGIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL 247 (448)
T ss_pred HHHHHHHHHhc-CCCCCCccCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence 33444444332 3567899999999999998 999999999999999999999999999997669999999999999999
Q ss_pred HHHHHHHHcCCCccccccCCCCCCCCHHHHHHH---HHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEc
Q 005204 512 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLVID 587 (709)
Q Consensus 512 ~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~---~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~-~~~lIVID 587 (709)
+.|+++..++++...++.| .++.++|.++ ...+.+..+++. +....++++|...+++++.++ ++++||||
T Consensus 248 ~~R~l~~~~~v~~~~i~~~----~l~~~e~~~~~~a~~~l~~~~~~i~--d~~~~ti~~i~~~~r~~~~~~~~~~~vvID 321 (448)
T PRK05748 248 VMRMLCAEGNIDAQRLRTG----QLTDDDWPKLTIAMGSLSDAPIYID--DTPGIKVTEIRARCRRLAQEHGGLGLILID 321 (448)
T ss_pred HHHHHHHhcCCCHHHhhcC----CCCHHHHHHHHHHHHHHhcCCEEEE--CCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 9999999999998888766 7888888665 445555555552 245578999999999998887 89999999
Q ss_pred cCcccccCCC-CCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeC
Q 005204 588 PYNELDHQRP-VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665 (709)
Q Consensus 588 ~~~~l~~~~~-~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~ 665 (709)
|++++.... .+.++.+++.++++.||.||+++||+||+++| ||..+.+.+++|.++|++||+.|+|.||.|++|+|+
T Consensus 322 -yL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~Sg~Ieq~AD~v~~l~r~ 400 (448)
T PRK05748 322 -YLQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYRD 400 (448)
T ss_pred -cchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHHHhhcchhcCCCEEEEEecc
Confidence 778775432 23567788999999999999999999999999 998777778899999999999999999999999998
Q ss_pred CCC--CCCCCCeEEEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005204 666 RDP--EAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 666 ~~~--e~~~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
+.. +....+.++++|.|||+|++|.+ .+.|++.+.||.++
T Consensus 401 ~~~~~~~~~~~~~e~~v~K~R~G~~g~~---~~~~~~~~~~f~~~ 442 (448)
T PRK05748 401 DYYDEETENKNTIEIIIAKQRNGPVGTV---ELAFQKEYNKFVNL 442 (448)
T ss_pred cccCccccCCCceEEEEeccCCCCCceE---EEEEeCCCCccccc
Confidence 732 22335689999999999888775 79999999999875
No 18
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=100.00 E-value=5.6e-38 Score=348.18 Aligned_cols=249 Identities=20% Similarity=0.280 Sum_probs=210.6
Q ss_pred chhhhhhhcccCCCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHH
Q 005204 434 FDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 512 (709)
Q Consensus 434 ~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~ 512 (709)
++.+++...+ .+...|++|||+.||++++ +++|+|++|+|+||+|||+|++++|.++|.++|.+|+|||+||++++++
T Consensus 161 ~~~~~~~~~~-~~~~~gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~ 239 (421)
T TIGR03600 161 VRDLDKRFNP-KGELTGLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLG 239 (421)
T ss_pred HHHHHHHhcC-CCCCcceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHH
Confidence 3444444332 3456899999999999998 9999999999999999999999999999965699999999999999999
Q ss_pred HHHHHHHcCCCccccccCCCCCCCCHHHHHHHH---HHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEcc
Q 005204 513 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK---AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLVIDP 588 (709)
Q Consensus 513 ~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~---~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~-~~~lIVID~ 588 (709)
.|+++..++++...++.| .++.+++.++. ..+.+..+++ ++.+..++++|...+++++.++ ++++||||
T Consensus 240 ~Rl~~~~~~v~~~~~~~~----~l~~~~~~~~~~~~~~l~~~~l~i--~d~~~~t~~~i~~~~r~~~~~~~~~~lvvID- 312 (421)
T TIGR03600 240 ERLLASKSGINTGNIRTG----RFNDSDFNRLLNAVDRLSEKDLYI--DDTGGLTVAQIRSIARRIKRKKGGLDLIVVD- 312 (421)
T ss_pred HHHHHHHcCCCHHHHhcC----CCCHHHHHHHHHHHHHHhcCCEEE--ECCCCCCHHHHHHHHHHHHHhcCCCCEEEEe-
Confidence 999999999999988876 78888877653 4555544455 2355678999999999988777 79999999
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCC
Q 005204 589 YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD 667 (709)
Q Consensus 589 ~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~ 667 (709)
|++++... ...++.+.+.++++.||.||+++||+||+++| +|..+++.+++|.++|++||+.|+|.||+|++|+|++.
T Consensus 313 yLql~~~~-~~~~~~~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdlr~Sg~Ieq~AD~v~~l~R~~~ 391 (421)
T TIGR03600 313 YIQLMAPT-RGRDRNEELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGY 391 (421)
T ss_pred cccccCCC-CCCCHHHHHHHHHHHHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHHhhcCCccccCcEEEEeccccc
Confidence 77777643 34567888999999999999999999999999 99888888899999999999999999999999999875
Q ss_pred CCC--CCCCeEEEEEEeeeCCCccee
Q 005204 668 PEA--GPIDRVQVCVRKVRNKVVGTI 691 (709)
Q Consensus 668 ~e~--~~~~~~~l~v~K~R~g~~G~~ 691 (709)
.+. ...+.++|+|.|+|||++|.+
T Consensus 392 ~~~~~~~~~~~el~v~K~R~G~~g~~ 417 (421)
T TIGR03600 392 YDAREPPAGVAELILAKNRHGPTGTV 417 (421)
T ss_pred cCCccCCCCceEEEEECCCCCCCceE
Confidence 432 223679999999999888875
No 19
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=100.00 E-value=3.7e-36 Score=330.13 Aligned_cols=268 Identities=25% Similarity=0.346 Sum_probs=197.5
Q ss_pred HHHHHHHHhcCcccccccCCceeeeecCCCCCCCCCCCceEEEEeeCCCeeEEEEeccccccccccccccccccccc---
Q 005204 118 EILKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQS--- 194 (709)
Q Consensus 118 ~~l~~~L~~~Gi~~~~~~~G~~~~~~CPfc~~~~~~~~s~sv~i~~~~~~~~~~Cf~~~Cg~~G~~~~~~~~~~~~~--- 194 (709)
..|.+++.++ +.++ +.|++++++||||+++ +|||+|+.. ++.||||+ ||.+|++++|++......
T Consensus 14 ~~i~~vi~~~-~~l~--~~G~~~~~~CPfh~ek---~pSf~v~~~----k~~~~Cf~--Cg~~Gd~i~fv~~~~~~sf~e 81 (415)
T TIGR01391 14 VDIVDVISEY-VKLK--KKGRNYVGLCPFHHEK---TPSFSVSPE----KQFYHCFG--CGAGGDAIKFLMEIEGISFVE 81 (415)
T ss_pred CCHHHHHHhh-Ccee--ecCCceEeeCCCCCCC---CCeEEEEcC----CCcEEECC--CCCCCCHHHHHHHHhCCCHHH
Confidence 5566777776 5555 5799999999999985 688888776 89999999 999999999988643210
Q ss_pred ---hh--------hh-c--c-------chhhhhhh-------ccccccCCcCcHHHHHHHHhCCCCHHHHHHcccccc--
Q 005204 195 ---SL--------KK-F--S-------KMKTIREI-------TEDSLELEPLGNELRAYFAERLISAETLRRNRVMQK-- 244 (709)
Q Consensus 195 ---~~--------~~-~--~-------~~~~~~~~-------~~~~~~~~~l~~~~~~YL~~RGI~~~~~~~~~~~~~-- 244 (709)
.+ +. . . ..+....+ ....+...+.++.+++||.+|||++++++.|+++..
T Consensus 82 A~~~La~~~gi~l~~~~~~~~~~~~~~~~~~l~~~~~~a~~~y~~~L~~~~~~~~a~~YL~~RGis~e~i~~f~lGyap~ 161 (415)
T TIGR01391 82 AVEELAKRAGIDLPFEKDQQEKKEQKSKRKKLYELLELAAKFFKNQLKHTPENRAALDYLQSRGLSDETIDRFELGYAPN 161 (415)
T ss_pred HHHHHHHHcCCCCCcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHcCCCHHHHHHcCCCCCCC
Confidence 00 00 0 0 00000000 001122223345689999999999999999987411
Q ss_pred --------------C--------------------CCCeeEEEEeEe-cCCEEEEEEeecCC---CcccccC-----CCC
Q 005204 245 --------------R--------------------HGHEVVIAFPYW-RNGKLVNCKYRDFN---KKFWQEK-----DTE 281 (709)
Q Consensus 245 --------------~--------------------~g~~~~i~fP~~-~~G~lv~~~~R~~~---kk~~~~~-----~~~ 281 (709)
+ +.++++|+||+. ..|++++|++|.++ +||.+++ +++
T Consensus 162 ~~~~l~~~l~~k~~~~~~~l~~~Gl~~~~~~g~~~d~Fr~RiifPi~d~~G~vvgf~gR~~~~~~pKYlNspet~~f~K~ 241 (415)
T TIGR01391 162 NWDFLFDFLQNKKGFDLELLAEAGLLVKKENGKYYDRFRNRIMFPIHDPKGRVVGFGGRALGDEKPKYLNSPETPLFKKS 241 (415)
T ss_pred cHHHHHHHHHhccCCCHHHHHHCCCeEECCCCCeeeecCCeEEEEEECCCCCEEEEEeeecCCCCCceeCCCCCCCccCC
Confidence 0 013568999998 68999999999983 6888866 457
Q ss_pred Ccccccccc----CCCCeEEEEcChhhHHHHHHhCCceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcC-cCE
Q 005204 282 KVFYGLDDI----EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ-ASR 356 (709)
Q Consensus 282 ~~lyg~~~i----~~~~~viI~EG~~DaLsl~q~g~~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~-~~~ 356 (709)
..+||++.+ .+.+.|+||||++||||++|+|+.++||+ .|++. +. ++++.|.+ .++
T Consensus 242 ~~lygl~~a~~~~~~~~~viivEG~~Daisl~~~G~~~aVA~-~Gtal-------t~-----------~~~~~l~r~~~~ 302 (415)
T TIGR01391 242 ELLYGLHKARKEIRKEKELILVEGYMDVIALHQAGIKNAVAS-LGTAL-------TE-----------EHIKLLKRYADE 302 (415)
T ss_pred ccccCHhHHHHhhccCCcEEEEecHHHHHHHHHCCCCcEEEC-CCCCC-------cH-----------HHHHHHHhhCCe
Confidence 899999854 35678999999999999999999999995 47753 32 22334433 358
Q ss_pred EEEEecCChhhHHHHHHHHHHhCC--cceEEEEcCCCCCCCCCCCHHHHHHhcCCCccceeeeccccc
Q 005204 357 IILATDGDPPGQALAEELARRVGR--ERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422 (709)
Q Consensus 357 Ivi~~DnD~aG~~aa~~~a~~l~~--~~~~iv~~P~~~~~~~~kD~ND~l~~~g~e~l~~~l~~A~~~ 422 (709)
|++|+|+|.||++|+.++++.+.. ..++++.|| .+|||||+++++|.+++++++++|.++
T Consensus 303 vvl~~D~D~aG~~aa~r~~~~l~~~g~~v~v~~lp------~gkDpdd~l~~~g~~~~~~~l~~a~~~ 364 (415)
T TIGR01391 303 IILCFDGDKAGRKAALRAIELLLPLGINVKVIKLP------GGKDPDEYLRKEGVEALKKLLENSKSL 364 (415)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECC------CCCCHHHHHHHhCHHHHHHHHhcCCCH
Confidence 999999999999999999888732 367888877 579999999999999999999988664
No 20
>PRK05667 dnaG DNA primase; Validated
Probab=100.00 E-value=6.7e-36 Score=338.13 Aligned_cols=267 Identities=24% Similarity=0.373 Sum_probs=198.7
Q ss_pred HHHHHHHHhcCcccccccCCceeeeecCCCCCCCCCCCceEEEEeeCCCeeEEEEeccccccccccccccccccccch--
Q 005204 118 EILKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSS-- 195 (709)
Q Consensus 118 ~~l~~~L~~~Gi~~~~~~~G~~~~~~CPfc~~~~~~~~s~sv~i~~~~~~~~~~Cf~~~Cg~~G~~~~~~~~~~~~~~-- 195 (709)
..|.+++..+ +.++ +.|++++++||||+++ +|||+|+.. ++.||||+ ||.+|++++|++.......
T Consensus 16 ~dI~~vi~~~-v~Lk--k~G~~~~~~CPfH~ek---tpSf~V~~~----k~~~~CF~--Cg~~Gd~i~fv~~~~~~sf~e 83 (580)
T PRK05667 16 VDIVDVIGEY-VKLK--KAGRNYKGLCPFHDEK---TPSFTVSPD----KQFYHCFG--CGAGGDVIKFLMEYEGLSFVE 83 (580)
T ss_pred CCHHHHHHHh-ccee--ecCCceeecCCCCCCC---CCceEEECC----CCeEEECC--CCCCCCHHHHHHHHhCCCHHH
Confidence 3455566665 5554 5799999999999985 688888876 89999999 9999999999987432100
Q ss_pred ----h------hhcc-----chh--hhhhh------cc-ccccCCcCcHHHHHHHHhCCCCHHHHHHcccccc-------
Q 005204 196 ----L------KKFS-----KMK--TIREI------TE-DSLELEPLGNELRAYFAERLISAETLRRNRVMQK------- 244 (709)
Q Consensus 196 ----~------~~~~-----~~~--~~~~~------~~-~~~~~~~l~~~~~~YL~~RGI~~~~~~~~~~~~~------- 244 (709)
+ +.+. ..+ ....+ .+ ..+. .+.++.+++||.+|||++++++.|+++..
T Consensus 84 Av~~La~~~gi~~~~~~~~~~~~~~~l~~~~~~a~~~y~~~L~-~~~~~~a~~YL~~RGls~~~i~~f~lGyap~~~~~L 162 (580)
T PRK05667 84 AVEELADRAGIELPYEDQQERSRRQRLYEIMELAAKFYQQQLR-TPEGAEARQYLYKRGLSEETIERFGIGYAPDGWDAL 162 (580)
T ss_pred HHHHHHHHhCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHc-CccchHHHHHHHHcCCCHHHHHHhCCccCCChHHHH
Confidence 0 0000 000 00000 00 1111 34567899999999999999999987521
Q ss_pred -----------------------------CCCCeeEEEEeEe-cCCEEEEEEeecCC---CcccccC-----CCCCcccc
Q 005204 245 -----------------------------RHGHEVVIAFPYW-RNGKLVNCKYRDFN---KKFWQEK-----DTEKVFYG 286 (709)
Q Consensus 245 -----------------------------~~g~~~~i~fP~~-~~G~lv~~~~R~~~---kk~~~~~-----~~~~~lyg 286 (709)
|+.++++|+||+. ..|++++|++|.++ +||.+++ +++..|||
T Consensus 163 ~~~l~~~~~~~~~l~~~GL~~~~~~~~~~yd~Fr~RimfPI~d~~G~vigF~GR~l~~~~pKYlNSpet~iF~K~~~LYg 242 (580)
T PRK05667 163 LKHLGGKGFSEKELEEAGLLIKNEDGGGPYDRFRNRIMFPIRDLRGRVIGFGGRVLGDDKPKYLNSPETPLFHKGRVLYG 242 (580)
T ss_pred HHHHHhcCCCHHHHHHCCceEecCCCCCcchhcCCeEEEEEECCCCcEEEEEeeecCCCCCeeeCCCCCCCccCCccccC
Confidence 0113579999998 68999999999883 6898876 46789999
Q ss_pred ccccC----CCCeEEEEcChhhHHHHHHhCCceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCc-CEEEEEe
Q 005204 287 LDDIE----GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA-SRIILAT 361 (709)
Q Consensus 287 ~~~i~----~~~~viI~EG~~DaLsl~q~g~~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~-~~Ivi~~ 361 (709)
++.+. +.+.|+||||++|+||++|+|+.+|||+ .|++ |+. +++..|.++ .+|++|+
T Consensus 243 l~~a~~~i~~~~~viivEG~~Dvisl~q~Gi~naVA~-lGta-------lt~-----------~~~~~L~r~~~~vil~~ 303 (580)
T PRK05667 243 LDEARKAIAKKKQVIVVEGYMDVIALHQAGITNAVAS-LGTA-------LTE-----------EHLKLLRRLTDEVILCF 303 (580)
T ss_pred ccHHHHhcccCCeEEEEeeHHHHHHHHHcCCCcEEEe-CCCC-------CCH-----------HHHHHHHhcCCeEEEEe
Confidence 98643 5678999999999999999999999985 4775 332 223444433 5899999
Q ss_pred cCChhhHHHHHHHHHH---h--CCcceEEEEcCCCCCCCCCCCHHHHHHhcCCCccceeeeccccc
Q 005204 362 DGDPPGQALAEELARR---V--GRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422 (709)
Q Consensus 362 DnD~aG~~aa~~~a~~---l--~~~~~~iv~~P~~~~~~~~kD~ND~l~~~g~e~l~~~l~~A~~~ 422 (709)
|+|.||++||.++++. + ....++++.+| .++||||+++++|.+++.+++++|.++
T Consensus 304 D~D~AG~~aa~r~~~~~~~l~~~g~~v~vv~lp------~gkDpdd~l~~~G~~~~~~~i~~a~~~ 363 (580)
T PRK05667 304 DGDKAGRKAALRALELALPLLKDGRQVRVAFLP------DGKDPDDLVRKEGPEAFRALLEQAIPL 363 (580)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCceEEEEECC------CCCChHHHHHHhCHHHHHHHHHcCCCH
Confidence 9999999999999887 4 22367888887 579999999999999999999998764
No 21
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=100.00 E-value=2.9e-33 Score=292.93 Aligned_cols=253 Identities=23% Similarity=0.298 Sum_probs=202.6
Q ss_pred cccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccc
Q 005204 448 EFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 526 (709)
Q Consensus 448 ~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~ 526 (709)
..|++|||+.||++++ +.+|++++|+|+||+|||+|++|++.+++.++|++|+|||+||+.+++..|+.+.+.+.++..
T Consensus 10 ~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~~ 89 (271)
T cd01122 10 NEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLHL 89 (271)
T ss_pred ccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCccc
Confidence 3599999999999999 999999999999999999999999999998779999999999999999999999988887754
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhc--CcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHH
Q 005204 527 ANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 604 (709)
Q Consensus 527 i~~g~~~~~l~~e~~~~~~~~l~~--~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~ 604 (709)
+.. ....+.+++..+.+.+.+ .++++ +..+..+++++++.++.++.++++++||||++..+........++..
T Consensus 90 ~~~---~~~~~~~~~~~~~~~~~~~~~l~i~--d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~ 164 (271)
T cd01122 90 PDT---VFIYTLEEFDAAFDEFEGTGRLFMY--DSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERK 164 (271)
T ss_pred CCc---cccccHHHHHHHHHHhcCCCcEEEE--cCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHH
Confidence 421 113556667666666543 23333 22344578999999999988899999999977666543212344556
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCC---CCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEE
Q 005204 605 YVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNW---VGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCV 680 (709)
Q Consensus 605 ~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~---~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v 680 (709)
.+.+++..|+.+|+++||+|++++| ++....+ .+++|+++|++||+.+++.||+||.|+++++.|....+...|.|
T Consensus 165 ~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~~~~e~~~~~~~~i~v 244 (271)
T cd01122 165 ALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQAELDERNTTYLRI 244 (271)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEecCccccccCCcEEEEE
Confidence 6789999999999999999999999 6544322 24689999999999999999999999998754323346788999
Q ss_pred EeeeCC-CcceeeeEEEEEEccccEEEc
Q 005204 681 RKVRNK-VVGTIGEAFLSYNRVTGEYMD 707 (709)
Q Consensus 681 ~K~R~g-~~G~~g~~~l~fd~~t~rf~~ 707 (709)
.|+|++ .+|.. +++.||++|+||..
T Consensus 245 ~K~R~~~~~g~~--~~~~~~~~t~~~~~ 270 (271)
T cd01122 245 LKNRFTGGTGVA--GPLEYDKETGRLSP 270 (271)
T ss_pred EeeccCCCccce--eeEEEECCCceecC
Confidence 999986 44432 58999999999964
No 22
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=100.00 E-value=5.5e-33 Score=285.92 Aligned_cols=234 Identities=20% Similarity=0.257 Sum_probs=193.9
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCC
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 535 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~ 535 (709)
+||++++ +++|++++|+|+||+|||+|++|++.+++.++|.+|+|||+||++++++.|+++..++++...+..+ .
T Consensus 2 ~LD~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~----~ 77 (242)
T cd00984 2 DLDNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTG----S 77 (242)
T ss_pred chhhhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcC----C
Confidence 5899998 9999999999999999999999999999998899999999999999999999999999998887765 5
Q ss_pred CCHHHHHHH---HHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHH
Q 005204 536 MTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM 612 (709)
Q Consensus 536 l~~e~~~~~---~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~ 612 (709)
++.+++.+. ...+....+++. ..+..++++|.+.|+.++.++++++||||++..+.... ...++.+.+..++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~-~~~~~~~~~~~~~~~ 154 (242)
T cd00984 78 LSDEDWERLAEAIGELKELPIYID--DSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK-KKGNRQQEVAEISRS 154 (242)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEe--CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC-CCCCHHHHHHHHHHH
Confidence 665555443 344444444442 24567899999999999988999999999666554322 345677889999999
Q ss_pred HHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCC--CCCCCCeEEEEEEeeeCCCcc
Q 005204 613 VKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP--EAGPIDRVQVCVRKVRNKVVG 689 (709)
Q Consensus 613 Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~--e~~~~~~~~l~v~K~R~g~~G 689 (709)
|+.||+++||+||+++| +|...++.+++|.+++++||+.+++.||.||.|++++.. +....+..+|.|.|||+|+.|
T Consensus 155 L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~~~~~~~~~~~~~~~~l~v~KnR~G~~g 234 (242)
T cd00984 155 LKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDEYYNKESESKGIAEIIVAKNRNGPTG 234 (242)
T ss_pred HHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEecccccccccCCCCceEEEEECCCCCCCe
Confidence 99999999999999999 876655556789999999999999999999999998742 233466899999999997666
Q ss_pred eeeeEEEEEEc
Q 005204 690 TIGEAFLSYNR 700 (709)
Q Consensus 690 ~~g~~~l~fd~ 700 (709)
. +.|.||+
T Consensus 235 ~---~~l~~~~ 242 (242)
T cd00984 235 T---VELRFDG 242 (242)
T ss_pred e---EEEEeeC
Confidence 5 5799985
No 23
>PHA02540 61 DNA primase; Provisional
Probab=100.00 E-value=5.9e-34 Score=297.56 Aligned_cols=251 Identities=18% Similarity=0.312 Sum_probs=177.2
Q ss_pred CCceeeeecCCCCCCCC--CCCceEEEEeeCCCeeEEEEecccccccccccccccccccc------chh----------h
Q 005204 136 PGVENRMLCPKCNGGDS--EELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQ------SSL----------K 197 (709)
Q Consensus 136 ~G~~~~~~CPfc~~~~~--~~~s~sv~i~~~~~~~~~~Cf~~~Cg~~G~~~~~~~~~~~~------~~~----------~ 197 (709)
.|. ++++||||+++.+ .+|||+|+.. .+.+.||||+ ||++|+++.|+|+.+.. +++ .
T Consensus 23 ~~~-~~~~CPf~~ds~~~~~kpsF~V~p~--k~~~~yhCFg--CGa~Gd~i~Flme~e~lsf~Eav~~la~~~g~~~~~~ 97 (337)
T PHA02540 23 SSF-YNFRCPICGDSQKDKNKARGWIYEK--KDGGVFKCHN--CGYHRPFGNFLKDYEPDLYREYIMERFKERGTGKGRP 97 (337)
T ss_pred Cce-EEecCCCCCCccccCcCCcEEEecc--CCceEEEecC--CCCCCCHHHHHHHhcCCChHHHHHHHHHHhCCccccC
Confidence 344 8999999999654 4555655555 3345999999 99999999999875421 000 0
Q ss_pred -hccch---hh---hhhh-ccccccCCcCcHHHHHHHHhCCCCHHHHHHccccccCC--------------CCeeEEEEe
Q 005204 198 -KFSKM---KT---IREI-TEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRH--------------GHEVVIAFP 255 (709)
Q Consensus 198 -~~~~~---~~---~~~~-~~~~~~~~~l~~~~~~YL~~RGI~~~~~~~~~~~~~~~--------------g~~~~i~fP 255 (709)
..... +. .... ....+...+.+..+++||.+|||++++++.++..+.+. ..++||+||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~a~~YL~~RGi~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~d~~RImFP 177 (337)
T PHA02540 98 VPKPKFEFKKEKKVIEKLPFCERLDTLPEDHPIIKYVENRCIPKDKWKLLYFTREWQKLVNSIKPDTYKKEKPEPRLVIP 177 (337)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHcCCCHHHHHhcCCCccHHHHHHHHhhccCchhccCCeeEEE
Confidence 00000 00 0000 11112223446689999999999999999876532210 135899999
Q ss_pred Ee-cCCEEEEEEeecCC----CcccccC--CCCCccccccccCCCCeEEEEcChhhHHHHHHhCCceEEEcCCCCCCCCC
Q 005204 256 YW-RNGKLVNCKYRDFN----KKFWQEK--DTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS 328 (709)
Q Consensus 256 ~~-~~G~lv~~~~R~~~----kk~~~~~--~~~~~lyg~~~i~~~~~viI~EG~~DaLsl~q~g~~~~val~~G~~~~~~ 328 (709)
+. ..|++++|++|.++ +||.+++ ++...|||++.+.+.+.++||||+||+|+ +.|+|| +.||+
T Consensus 178 I~d~~G~vigFgGR~l~~~~~pKYlNSp~f~K~~~LYGl~~a~~~~~vilvEGYmDvi~-----i~naVA-tlGTa---- 247 (337)
T PHA02540 178 IFNKDGKIESFQGRALRKDAPQKYITIKADEEATKIYGLDRIDPGKTVYVVEGPIDSLF-----LPNSIA-ITGGD---- 247 (337)
T ss_pred EECCCCCEEEEEeEECCCCCCCCeeeCCcccccccccChhHhccCCEEEEEeCCcceee-----ecccee-eCccc----
Confidence 98 79999999999993 4899876 57888999999988889999999999997 478888 45887
Q ss_pred CCCCCchhhhhhHHHHHhHhhhhcCcCEEEEEecCChhhHHHHHHHHHHhCCcceEEEEcCCCCCCCCCCCHHHHHHhcC
Q 005204 329 KKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLG 408 (709)
Q Consensus 329 ~~~L~~~~~~~~~~~l~~~~~~L~~~~~Ivi~~DnD~aG~~aa~~~a~~l~~~~~~iv~~P~~~~~~~~kD~ND~l~~~g 408 (709)
|+..+ .. -..+|+|++||| +|++|+.+..+.|....+.++.||.. +.++|||||+++++|
T Consensus 248 ---LT~~~-----------~~---~~~~vvl~~D~D-a~~~at~r~~~~l~~~g~~v~v~~~~--~~~~kDpde~i~~~G 307 (337)
T PHA02540 248 ---LDLNE-----------VP---FKDTRVWVLDNE-PRHPDTIKRISKLIDAGEKVVIWDKC--PWPSKDINDMIMKGG 307 (337)
T ss_pred ---cCHhH-----------hC---ccceEEEEECCc-hhHHHHHHHHHHHHHCCCeEEEecCC--CCCCcCHHHHHHhcC
Confidence 34221 11 126899999999 66788877777774334666777742 247899999999988
Q ss_pred C--Cccceeeecccc
Q 005204 409 P--GALKEVVENAEL 421 (709)
Q Consensus 409 ~--e~l~~~l~~A~~ 421 (709)
. +++.+++++...
T Consensus 308 ~~~~~~~~~i~~n~~ 322 (337)
T PHA02540 308 ATPEDIMEYIKSNTY 322 (337)
T ss_pred CCHHHHHHHHHHccc
Confidence 6 677777776643
No 24
>COG0358 DnaG DNA primase (bacterial type) [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.8e-33 Score=315.99 Aligned_cols=272 Identities=22% Similarity=0.321 Sum_probs=199.7
Q ss_pred CchhhhcchhhHHHHHHHHHhcCcccccccCCceeeeecCCCCCCCCCCCceEEEEeeCCCeeEEEEecccccccccccc
Q 005204 106 ETEEKMLDSRSWEILKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSA 185 (709)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~L~~~Gi~~~~~~~G~~~~~~CPfc~~~~~~~~s~sv~i~~~~~~~~~~Cf~~~Cg~~G~~~~ 185 (709)
+++|.+-+...++++.+ .-++++ +.|++|+++||||+++ +|||+|+.. ++.||||+ ||++|+++.
T Consensus 5 ~~i~~l~~~~dIvdvI~----~~v~Lk--k~G~~y~~lCPFH~Ek---tPSf~V~~~----k~~yhCFG--Cg~~Gd~i~ 69 (568)
T COG0358 5 EFIDELRERIDIVDVIG----EYVKLK--KQGANYTGLCPFHAEK---TPSFTVSPE----KGFYHCFG--CGAGGDAIK 69 (568)
T ss_pred HHHHHHHHcCCHHHHHh----hheEee--ecCCCceeECcCCCCC---CCCceEeCC----CCeEecCC--CCCCccHHH
Confidence 44555555555555554 223333 5799999999999995 788888877 89999999 999999999
Q ss_pred ccccccccchhh-------------------hccchhhhh-------hhccccccCCcCcHHHHHHHHhCCCCHHHHHHc
Q 005204 186 LVDNNRSQSSLK-------------------KFSKMKTIR-------EITEDSLELEPLGNELRAYFAERLISAETLRRN 239 (709)
Q Consensus 186 ~~~~~~~~~~~~-------------------~~~~~~~~~-------~~~~~~~~~~~l~~~~~~YL~~RGI~~~~~~~~ 239 (709)
|+|+.......+ .......+. ......+. +.+.+++.||.+||++.+++..|
T Consensus 70 Fl~~~~g~sf~eav~~La~~~gi~~~~~~~~~~~~~~~l~~~~~~~~~fy~~~L~--~~~~~a~~yL~~Rgls~~~i~~f 147 (568)
T COG0358 70 FLMELLGLSFDEAVLQLAGRAGIELPYEKGKRIEKRQKLYDGKEEAAIFYQSSLD--PEGAAALKYLETRGLAAELIAHF 147 (568)
T ss_pred HHHHhcCCCHHHHHHHHHHHhCCCCCccccccchhHHHHHHHHHHHHHHHHHHHH--hchHHHHHHHHHcCCCHHHHHHh
Confidence 999854321110 000000000 01111122 55677889999999999999999
Q ss_pred ccc---------c-----c-------------------CCCCeeEEEEeEe-cCCEEEEEEeecC---CCcccccC----
Q 005204 240 RVM---------Q-----K-------------------RHGHEVVIAFPYW-RNGKLVNCKYRDF---NKKFWQEK---- 278 (709)
Q Consensus 240 ~~~---------~-----~-------------------~~g~~~~i~fP~~-~~G~lv~~~~R~~---~kk~~~~~---- 278 (709)
+++ + . |+.++++|+||+. ..|++++|.+|.+ .+||++++
T Consensus 148 ~iG~ap~~~~~~~~~~k~~~~~~~l~~~Gl~~~~~~~~ydrFr~RImfPI~d~~g~vigFggR~l~~~~~KYlNspet~i 227 (568)
T COG0358 148 RLGYAPPNDSLLPFLAKKEYREEKLEDLGLLKRKEGKIYDRFRNRIMFPIRDLRGDVIGFGGRVLGDDKPKYLNSPETEL 227 (568)
T ss_pred CCCCCCCchHHHHHHhcCCcCHHHHHHCCCeecCCCceeehhcCeeEEeccCCCCCEEeeeccccCCCCCcccCCCCCcC
Confidence 886 1 0 1114689999998 6899999999998 46899876
Q ss_pred -CCCCcccccccc----CCCCeEEEEcChhhHHHHHHhCCceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcC
Q 005204 279 -DTEKVFYGLDDI----EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ 353 (709)
Q Consensus 279 -~~~~~lyg~~~i----~~~~~viI~EG~~DaLsl~q~g~~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~ 353 (709)
++++.|||++.. .+.+.+|||||+||+++++++|+.||||+ .||+. ++ +++..|.+
T Consensus 228 f~Kg~~Lyg~~~a~~~~~~~~~iivVEGymDViaL~~aGi~naVA~-lGTal-------t~-----------ehi~~L~r 288 (568)
T COG0358 228 FKKGEELYGLDPARKKIAKADQIIVVEGYMDVIALHKAGIKNAVAS-LGTAL-------TE-----------EHIKLLSR 288 (568)
T ss_pred ccCcHHhhCHHHHHHhhccCCeEEEEechHHHHHHHHcCCcceeec-ccccC-------CH-----------HHHHHHHh
Confidence 678899998754 34678999999999999999999999994 58873 32 23444444
Q ss_pred -cCEEEEEecCChhhHHHHHHHHHHh---CCcceEEEEcCCCCCCCCCCCHHHHHHhcCCCccceeeecc
Q 005204 354 -ASRIILATDGDPPGQALAEELARRV---GRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENA 419 (709)
Q Consensus 354 -~~~Ivi~~DnD~aG~~aa~~~a~~l---~~~~~~iv~~P~~~~~~~~kD~ND~l~~~g~e~l~~~l~~A 419 (709)
..+|++|+|+|.||++||.++.+.. ....+.++.+| .++||+|+++..|.+++.+.+..+
T Consensus 289 ~~~~vil~fDgD~AG~~Aa~ral~~~~~~~~~~v~v~~~P------~GkDpDel~~k~g~~al~~~l~~~ 352 (568)
T COG0358 289 GKKKVILCFDGDRAGRKAAKRALQLVLPLDFVGVFVILLP------DGKDPDELIRKEGAEALRKKLPNE 352 (568)
T ss_pred cCCCEEEEeCChHHHHHHHHHHHHHhhhhccCCeEEEECC------CCCChHHHHHHhChHHHHHHHHhC
Confidence 4569999999999999988777633 22237888888 469999999999999988888764
No 25
>PHA02415 DNA primase domain-containing protein
Probab=99.96 E-value=1.9e-29 Score=278.60 Aligned_cols=286 Identities=21% Similarity=0.255 Sum_probs=194.5
Q ss_pred hhH-HHHHHHHHhcCcccccccCCceeeeecCCCCCCCCCCCceEEEEeeCCCeeEEEEecccccccccccccccccccc
Q 005204 115 RSW-EILKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQ 193 (709)
Q Consensus 115 ~~~-~~l~~~L~~~Gi~~~~~~~G~~~~~~CPfc~~~~~~~~s~sv~i~~~~~~~~~~Cf~~~Cg~~G~~~~~~~~~~~~ 193 (709)
.|. ++|.++++.+|+.+.+ .|.+++++||||+|+ +|||+|+.......+.||||+ ||.||++++|++.....
T Consensus 7 IK~~IDIVDVLerLGLkp~r--~G~~a~YlCPFHnEK---TPSFsVn~~~~~k~NiWyCFG--CG~GGDaIDFVmkiegl 79 (930)
T PHA02415 7 LKQRIDLHDLADRLGLKRGR--GGDKALYHSPQHEDK---SPSLSIYVNHPKHGTGWRDHS--ADAGGSCIDLVIHARGG 79 (930)
T ss_pred HHhcCCHHHHHHHcCCEEee--CCCeeeeeCCCCCCC---CCceEEeecccccCcEEEEeC--CCCCCCHHHHHHHHhCC
Confidence 444 7788999999999974 688899999999985 799999986433357899999 99999999999874321
Q ss_pred c------hhh------hc------cchhhhhhhccccccCCcCcHHHHHHHHhCCCCHHHHHH-cccccc----------
Q 005204 194 S------SLK------KF------SKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRR-NRVMQK---------- 244 (709)
Q Consensus 194 ~------~~~------~~------~~~~~~~~~~~~~~~~~~l~~~~~~YL~~RGI~~~~~~~-~~~~~~---------- 244 (709)
. .+. .. .+.+.. ..+... ....-...+.+||.+|||+++++.. +..+.-
T Consensus 80 SF~EAVe~Lae~~GI~lp~ps~s~kekK~K-a~Fl~~-r~~ad~rrA~AYLK~RGIS~EVI~~cIk~GlIg~~~W~s~rv 157 (930)
T PHA02415 80 TVADAVRYLHDAYGIPLDRPAPAERREKST-VEYIAD-RCLAERERVREYLGGRGISAAAIDAAFAARSLGFNTWTSSKV 157 (930)
T ss_pred CHHHHHHHHHHHcCCCCCCccccccchhhh-hhhhHh-hhccchHHHHHHHHhcCCCHHHHHHHHHcCcccccccccccc
Confidence 1 110 00 000000 000000 0011146799999999999999996 444211
Q ss_pred ------CCCCeeEEEEeEecCCEEEEEEeecCCCcccccC----CCCCcccccccc----CCCCeEEEEcChhhHHHHHH
Q 005204 245 ------RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEK----DTEKVFYGLDDI----EGESDIIIVEGEMDKLSMEE 310 (709)
Q Consensus 245 ------~~g~~~~i~fP~~~~G~lv~~~~R~~~kk~~~~~----~~~~~lyg~~~i----~~~~~viI~EG~~DaLsl~q 310 (709)
+.+..-+++||+..+|.++..+.|...+-|.... .++...|++... ...++|+||||++||||+++
T Consensus 158 ~agd~gygg~nAAFIVpf~rdGtvv~v~~Rg~d~afkG~vKanf~Gs~~G~gW~~p~~~L~~a~eVwIvEGiIDAISL~q 237 (930)
T PHA02415 158 AAGEVGHAGPAAAFIVREPADGRVVAVDMRYVDPALNGGVKTQTQGDKAGYGWTADARRLDKAKRVFIVESAINALSIDT 237 (930)
T ss_pred cccccccCCCceEEEecccCCceEEEeeeccccccccCCccccCCCCCCCCccCCCccccCCCCEEEEEechHhHHHHHH
Confidence 1122234678999999999999998754444422 224444555432 23578999999999999999
Q ss_pred hCCce--EEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCcCEEEEEecCChh------------hHHHHHHHHH
Q 005204 311 AGFLN--CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP------------GQALAEELAR 376 (709)
Q Consensus 311 ~g~~~--~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~~~Ivi~~DnD~a------------G~~aa~~~a~ 376 (709)
.|+++ +|++ .|..+.. .. + ++.| ..++|++|+|||+| |++||+++.+
T Consensus 238 ~Gi~avAaVAL-~GLan~~-~i-----------D-----~~~l-~~KrVvlcLDNDea~~~~~~~~g~rpG~eAA~~l~e 298 (930)
T PHA02415 238 CAMPGAAALAL-RGLANVD-AI-----------D-----FSSL-RGKQVVICLDNDEPFEDGHPRAGHRPGPEAAWALYE 298 (930)
T ss_pred cCchhHHHHHH-cCcCCCc-hh-----------h-----chhh-cCceEEEEecCCccccccCcccccCccHHHHHHHHH
Confidence 99874 4454 3554421 00 1 2334 45899999999998 9999999999
Q ss_pred HhCC--cceEEEE---cCC-----CCCCCCCCCHHHHHHhcCCCccceeeeccccccccccc
Q 005204 377 RVGR--ERCWRVR---WPK-----KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLF 428 (709)
Q Consensus 377 ~l~~--~~~~iv~---~P~-----~~~~~~~kD~ND~l~~~g~e~l~~~l~~A~~~~~~~l~ 428 (709)
++.. -.+.+|. |-+ .....+.+|+||+|+.+|.+++...++.-++|-+.+..
T Consensus 299 ~lta~~i~~~lvd~~~w~~~~~~~~~~~~~~~d~nd~l~~~g~~~~~~~l~~~~~wli~g~~ 360 (930)
T PHA02415 299 RLASLNISAVLVDQAGWLADLADGETKQQPINDVNDYLQLRGPEELARALEQLEPWLIAGLA 360 (930)
T ss_pred HHhhcCCceEEeehhhhhhhcccccccccccccHHHHHHHhCHHHHHHHHHhccccccCCCC
Confidence 9832 2345554 211 01124556999999999999999999999988776655
No 26
>PRK07773 replicative DNA helicase; Validated
Probab=99.96 E-value=1.3e-28 Score=294.23 Aligned_cols=220 Identities=21% Similarity=0.250 Sum_probs=188.9
Q ss_pred cchhhhhhhcccCCCcccccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHH
Q 005204 433 YFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511 (709)
Q Consensus 433 ~~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~ 511 (709)
.++.+++...+ .+...|++|||+.||++++ +++|++++|+|+||+|||+|++++|.++|.++|.+|+|||+||+.+++
T Consensus 183 ~~~~i~~~~~~-~~~~~Gi~TG~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql 261 (886)
T PRK07773 183 TFDEIDAIASS-GGLARGVPTGFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQL 261 (886)
T ss_pred HHHHHHHHHhc-CCCCCCccCChhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence 34455554333 3457899999999999998 999999999999999999999999999998778999999999999999
Q ss_pred HHHHHHHHcCCCccccccCCCCCCCCHHHHHHHH---HHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEcc
Q 005204 512 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK---AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDP 588 (709)
Q Consensus 512 ~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~---~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~ 588 (709)
+.|+++..++++...++.| +++.++|.++. ..+.+..+++ ++.+..++++|...++++++++++++||||
T Consensus 262 ~~R~~s~~~~i~~~~i~~g----~l~~~~~~~~~~a~~~l~~~~i~i--~d~~~~~i~~i~~~~r~~~~~~~~~lvvID- 334 (886)
T PRK07773 262 VMRLLSAEAKIKLSDMRSG----RMSDDDWTRLARAMGEISEAPIFI--DDTPNLTVMEIRAKARRLRQEANLGLIVVD- 334 (886)
T ss_pred HHHHHHHhcCCCHHHHhcC----CCCHHHHHHHHHHHHHHhcCCEEE--ECCCCCCHHHHHHHHHHHHHhcCCCEEEEc-
Confidence 9999999999999999876 78888886654 4555555555 235567899999999999999999999999
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEE
Q 005204 589 YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 660 (709)
Q Consensus 589 ~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl 660 (709)
|++++.......++.+++.++++.||.||+++||+||+++| ||..+.+.+++|.++|+++|+.+++.+-+.+
T Consensus 335 yLql~~~~~~~~~r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~e~r~~krP~lsDlres~~~~~d~~V~~ 407 (886)
T PRK07773 335 YLQLMTSGKKYENRQQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQRTDKRPMLSDLRESGCLTGDTLILR 407 (886)
T ss_pred chhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcEEEecccCcchhccCCCCCCHHHHhhcCcccCcceEEe
Confidence 88888644344667789999999999999999999999999 9999888899999999999999998766643
No 27
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=99.94 E-value=3.9e-26 Score=222.93 Aligned_cols=174 Identities=20% Similarity=0.313 Sum_probs=141.7
Q ss_pred HHHHHHHHhCCCCHHHHHHccccccCCCCeeEEEEeEe-cCCEEEEEEeecC--CCcccccC-----CCCCccccccc-c
Q 005204 220 NELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW-RNGKLVNCKYRDF--NKKFWQEK-----DTEKVFYGLDD-I 290 (709)
Q Consensus 220 ~~~~~YL~~RGI~~~~~~~~~~~~~~~g~~~~i~fP~~-~~G~lv~~~~R~~--~kk~~~~~-----~~~~~lyg~~~-i 290 (709)
..+.+||+++|+++..+...|....|.++..+|+||+. ..|++|+|.+|.+ .+||++++ .++..+||++. +
T Consensus 28 ~~l~~~l~~~g~~~~~~~~~G~~~~y~~~~~RimFPI~d~~G~vvgFgGR~l~~~~KYlNspet~~f~K~~~Lygl~~~~ 107 (218)
T TIGR00646 28 RCAMNYLKKRGFNLQDFLKVGGGLAYLGEKEWLNLPLYNFDGNLIGFLNRKVGFEKEFLYLPFNKPPSKSEAFLGLKELP 107 (218)
T ss_pred HHHHHHHHHcCCCHHHHHHcCCCEEecccCCEEEEEEECCCCCEEEEeccCCCCCCCcccCCCCCCcccchhhcCcchhh
Confidence 46899999999999999998865567788899999998 7899999999999 47899876 56888999854 4
Q ss_pred CCCCeEEEEcChhhHHHHHHhCCceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcC--cCEEEEEecCChhhH
Q 005204 291 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ--ASRIILATDGDPPGQ 368 (709)
Q Consensus 291 ~~~~~viI~EG~~DaLsl~q~g~~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~--~~~Ivi~~DnD~aG~ 368 (709)
.+.+.+|||||+||+||++|+|+.++|+ +.|++ |+. ++...|.+ .++|++|+|+|.||+
T Consensus 108 ~k~~~vilvEGymDVIsl~qaGi~naVA-slGTA-------LT~-----------~q~~lLkr~~~~~Iil~~D~D~AG~ 168 (218)
T TIGR00646 108 IEDNSIYLVEGDFDWLAFRKAGILNCLP-LCGLT-------ISD-----------KQMKFFKQKKIEKIFICFDNDFAGK 168 (218)
T ss_pred cCCCEEEEEecHHHHHHHHHCCCCeEEE-cCchH-------hHH-----------HHHHHHhccCCCEEEEEeCCCHHHH
Confidence 4567899999999999999999999998 56877 332 22344444 379999999999999
Q ss_pred HHHHHHHHHhC--CcceEEEEcCCCCCCCCCCCHHHHHHhcCCCccceeeec
Q 005204 369 ALAEELARRVG--RERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVEN 418 (709)
Q Consensus 369 ~aa~~~a~~l~--~~~~~iv~~P~~~~~~~~kD~ND~l~~~g~e~l~~~l~~ 418 (709)
+|+.++.+.+. ...+.++.+| ..+|||||+++..+. .+.++|.+
T Consensus 169 ~Aa~r~~~~L~~~G~~v~vv~lP-----~~~KDwNEllk~~~~-~w~~~l~~ 214 (218)
T TIGR00646 169 NAAANLEEILKKAGFITKVIEIK-----AAAKDWNDLFLLNNK-NWAAALRD 214 (218)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCC-----CcCCChhHHHHHhhh-hHHHHHHh
Confidence 99999999882 3467888887 478999999997653 45555544
No 28
>PRK08624 hypothetical protein; Provisional
Probab=99.94 E-value=1.1e-25 Score=235.20 Aligned_cols=230 Identities=19% Similarity=0.224 Sum_probs=158.2
Q ss_pred hhhHHHHHHHHHhcCcccccccCCce-eeeecCCCCCCCCCCCceEEEEeeCCCeeEEEEe-cccccccccccccccc--
Q 005204 114 SRSWEILKIKLKQLGLDIGRCAPGVE-NRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCF-RAKCGWKGSTSALVDN-- 189 (709)
Q Consensus 114 ~~~~~~l~~~L~~~Gi~~~~~~~G~~-~~~~CPfc~~~~~~~~s~sv~i~~~~~~~~~~Cf-~~~Cg~~G~~~~~~~~-- 189 (709)
.-..+.|...|+.+|-.....+.|+. ++++||+.+ +|||||+++++ +++|||| + ||.+|+|++|++.
T Consensus 10 ~l~~~~i~~il~~~g~~~~l~k~G~~~y~~~CH~e~-----~pS~sv~v~pe--kq~yhCF~G--CGa~GDVf~Fv~~~~ 80 (373)
T PRK08624 10 SLTPEDIIKILEEVGCENVRGKDGNTIAETACHNDG-----GGSTKLYYYIE--NDNFHCYTR--CGDIFDVFELLCKRL 80 (373)
T ss_pred hcCHHHHHHHHHHhcccceeccCCcchhheecCCCC-----CCCceEEEcCC--CCEEEEeCC--CCCCCceeeehhhhh
Confidence 33567788899999888775466888 789995443 59999988866 7999999 6 9999999999966
Q ss_pred ---cccc------chh--------hh-ccc---hhhh-h---hhccccc--------cCCcCcHHHHHHH--------Hh
Q 005204 190 ---NRSQ------SSL--------KK-FSK---MKTI-R---EITEDSL--------ELEPLGNELRAYF--------AE 228 (709)
Q Consensus 190 ---~~~~------~~~--------~~-~~~---~~~~-~---~~~~~~~--------~~~~l~~~~~~YL--------~~ 228 (709)
.... +.+ .. ... ...+ + ..|.... .+....+.++.|+ .+
T Consensus 81 ~me~~~lsF~eAve~LA~~aGI~l~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~~l~~~~e~~l~~f~~~~~~~~l~ 160 (373)
T PRK08624 81 KMEGKALSFSKAIRKITKILGLSYFYEPKQQGIKPSFLKILDWVWTGKKEKKEKIQPQLKSFNENILNQFVKIPNRKWLD 160 (373)
T ss_pred hccccCCCHHHHHHHHHHHhCcccccCcccccchhhhHhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhcccHHHHHH
Confidence 2111 000 00 000 0000 0 0011000 0111122333332 36
Q ss_pred CCCCHHHHHHccccccCCCCeeEEEEeEe-cCCEEEEEEeecCC------Cccccc----C----CCCCcccccccc---
Q 005204 229 RLISAETLRRNRVMQKRHGHEVVIAFPYW-RNGKLVNCKYRDFN------KKFWQE----K----DTEKVFYGLDDI--- 290 (709)
Q Consensus 229 RGI~~~~~~~~~~~~~~~g~~~~i~fP~~-~~G~lv~~~~R~~~------kk~~~~----~----~~~~~lyg~~~i--- 290 (709)
|||+++++++|+++-.++.+++||+||+. ..|++++|.+|.++ +||.+. + .++..|||++..
T Consensus 161 RGIs~etik~F~lGy~~D~Fr~RImFPI~d~~GrvIGFgGR~l~~~~~~~~KY~p~y~Nst~~~F~Kg~~LYGl~~Ak~~ 240 (373)
T PRK08624 161 EGISEKTQKYWEIKFYLDVISQRIIIPHRDESGELIGIRGRLLDKELVDKNKYFPIYVNDTGYNHPKGKILYGLWQNKKY 240 (373)
T ss_pred cCCCHHHHHHhCCCccccccCCeeEEEEECCCCCEEEEeCeEcCCCccccccccccCCCCcccccccchhhcCHHHHHHH
Confidence 99999999999997666668889999998 78999999999984 245432 1 367899998753
Q ss_pred -CCCCeEEEEcChhhHH---HHHHhCCceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCc--CEEEEEecC-
Q 005204 291 -EGESDIIIVEGEMDKL---SMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA--SRIILATDG- 363 (709)
Q Consensus 291 -~~~~~viI~EG~~DaL---sl~q~g~~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~--~~Ivi~~Dn- 363 (709)
.+.+.++||||+||++ +++++| .++||+ .||+ |++ +++..|.+. ++|+||+|+
T Consensus 241 irk~~~vIivEGymDVI~~~a~~~~G-~naVA~-lGTa-------lT~-----------~q~~lL~r~~~~~Vil~~Dgd 300 (373)
T PRK08624 241 IKEKKKVIIVESEKSVLFSDKFYGEG-NFVVAI-CGSN-------ISE-----------VQAEKLLRLGVEEVTIALDKE 300 (373)
T ss_pred hccCCeEEEEeccHHHHHHHHHhcCC-CcEEEC-Chhh-------CCH-----------HHHHHHHhcCCCcEEEEecCC
Confidence 4678899999999999 788999 889984 5776 443 335556555 599999999
Q ss_pred --ChhhHHHHH
Q 005204 364 --DPPGQALAE 372 (709)
Q Consensus 364 --D~aG~~aa~ 372 (709)
|.+|.++.+
T Consensus 301 ~~d~~~~~~~~ 311 (373)
T PRK08624 301 YMDVTEEEVYE 311 (373)
T ss_pred ccccchHHHHH
Confidence 667754443
No 29
>PHA02031 putative DnaG-like primase
Probab=99.92 E-value=7.1e-25 Score=218.73 Aligned_cols=232 Identities=15% Similarity=0.123 Sum_probs=163.2
Q ss_pred CceeeeecCCCCCCCCCCCceEEEEeeCCCeeEEEEeccccccccccccccccccccchhhhccchhhhhhhcccc---c
Q 005204 137 GVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDS---L 213 (709)
Q Consensus 137 G~~~~~~CPfc~~~~~~~~s~sv~i~~~~~~~~~~Cf~~~Cg~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 213 (709)
|...+++| .|+++ ..+.++-+++ .+..|||+ |+.+|.+..-.... .+... .+.+ .+|.+. +
T Consensus 18 g~~~r~~~-~~~~~----~~~~~~~~~~--~w~ayc~r--c~~~~~~~~~~~~~--~~~~~----~~~~-~~~p~d~~~~ 81 (266)
T PHA02031 18 GQTGRFRH-CCGGG----AAMTLYNNPD--RWVAYCYR--CKEGGKVEKTHVRR--VQCAD----QERF-MPWPEDASDI 81 (266)
T ss_pred cccceeee-ccCCC----ceeEEecCcc--hHHHHHHh--hcccchhhHHHHHH--HHHHH----HHhh-CCCCCChhhh
Confidence 44445553 17764 4566665544 67789999 99999876533211 00000 0000 112221 1
Q ss_pred cCCcCcHHHHHHHHhCCCCHHHHHHccccccCCCCeeEEEEeEecCCEEEEEEeecC---CCcccccCCCCCcccccccc
Q 005204 214 ELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDF---NKKFWQEKDTEKVFYGLDDI 290 (709)
Q Consensus 214 ~~~~l~~~~~~YL~~RGI~~~~~~~~~~~~~~~g~~~~i~fP~~~~G~lv~~~~R~~---~kk~~~~~~~~~~lyg~~~i 290 (709)
...|....+..||.++|++.+.+..-+. ..|+.+++||+||+.+ +|.+|.+ .+||.+++.+...+|+.+..
T Consensus 82 ~~~~~w~~L~~~L~~kG~~~~~l~~~~~-~~yDrFr~RimFPI~d-----gFgGR~l~~~~PKYLN~~SP~~~l~~~~~~ 155 (266)
T PHA02031 82 SQADAYQSLYGLLLSKGIDPNMMEPGLP-LEYSERQGRLIFRTDA-----GWLGRATADQQPKWVGYGYPAPDYVGWPPE 155 (266)
T ss_pred hcCChHHHHHHHHHHCCCCHHHHHhcCC-cceeeeCCEEEEeecc-----ccccccCCCCCCCcCCCCCCcHHHhhchhh
Confidence 2235556789999999999998876332 2366789999999987 7888876 47999955556788987753
Q ss_pred -CCCCeEEEEcChhhHHHHHH---hCCceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCc--CEEEEEecCC
Q 005204 291 -EGESDIIIVEGEMDKLSMEE---AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA--SRIILATDGD 364 (709)
Q Consensus 291 -~~~~~viI~EG~~DaLsl~q---~g~~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~--~~Ivi~~DnD 364 (709)
.+.+.+|||||+||++++++ +|+.++|+ +.||+ |+. ++...|.++ ++|++|+|+|
T Consensus 156 ~~~~~~vIlvEGYmDVI~l~~a~~aG~~naVA-~LGTA-------LT~-----------~q~~~L~r~~~~~Vil~fDgD 216 (266)
T PHA02031 156 LSMPRPVVLTEDYLSALKVRWACNKPEVFAVA-LLGTR-------LRD-----------RLAAILLQQTCPRVLIFLDGD 216 (266)
T ss_pred hccCCeEEEEcCcHHHHHHHHHHhcCcceEEE-CCccc-------CCH-----------HHHHHHHhcCCCCEEEEeCCC
Confidence 35788999999999999975 69999999 56888 443 234555553 8999999999
Q ss_pred hhhHHHHHHHHHHh--CCcceEEEEcCCCCCCCCCCCHHHHHHhcCCCcccee
Q 005204 365 PPGQALAEELARRV--GRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEV 415 (709)
Q Consensus 365 ~aG~~aa~~~a~~l--~~~~~~iv~~P~~~~~~~~kD~ND~l~~~g~e~l~~~ 415 (709)
.||++|+.+..+.| ....++++.+| .++||+|+++..+.+++...
T Consensus 217 ~AG~~Aa~ra~~~l~~~~~~v~vv~lP------~g~DPDd~ir~~i~eal~~~ 263 (266)
T PHA02031 217 PAGVDGSAGAMRRLRPLLIEGQVIITP------DGFDPKDLEREQIRELLIGR 263 (266)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEECC------CCCChHHHHHHHHHHHHhcc
Confidence 99999999998876 22468889988 57999999998776655443
No 30
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7e-22 Score=206.45 Aligned_cols=199 Identities=18% Similarity=0.264 Sum_probs=158.8
Q ss_pred CCcccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCC
Q 005204 446 GDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 523 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~ 523 (709)
...++++||+.+||+.|| +.+|.+++|+|.||.||||+++|++..+|.+ + +|||+|.|++..|+..|.. -++++
T Consensus 70 ~~~~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~-~-~vLYVsGEES~~QiklRA~--RL~~~ 145 (456)
T COG1066 70 EEEPRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR-G-KVLYVSGEESLQQIKLRAD--RLGLP 145 (456)
T ss_pred eecccccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhc-C-cEEEEeCCcCHHHHHHHHH--HhCCC
Confidence 345789999999999998 9999999999999999999999999999987 6 9999999999999876653 22221
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCC-CCCCCH
Q 005204 524 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR-PVSQTE 602 (709)
Q Consensus 524 ~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~-~~~~~~ 602 (709)
. +.++++ ...++++|++.++ +.+++++||||+..+.... .+....
T Consensus 146 ~-------------------------~~l~l~-----aEt~~e~I~~~l~----~~~p~lvVIDSIQT~~s~~~~SapGs 191 (456)
T COG1066 146 T-------------------------NNLYLL-----AETNLEDIIAELE----QEKPDLVVIDSIQTLYSEEITSAPGS 191 (456)
T ss_pred c-------------------------cceEEe-----hhcCHHHHHHHHH----hcCCCEEEEeccceeecccccCCCCc
Confidence 1 123333 2455777766654 4789999999988877643 223334
Q ss_pred HHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEe
Q 005204 603 TEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRK 682 (709)
Q Consensus 603 ~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K 682 (709)
-..+++...+|.++||+.|++++++.|-.|.. .|+|-.-+|+..|+|+.++.+... ..+.|.-.|
T Consensus 192 VsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG----------~IAGPrvLEHmVDtVlyFEGd~~~-----~~RiLR~vK 256 (456)
T COG1066 192 VSQVREVAAELMRLAKTKNIAIFIVGHVTKEG----------AIAGPRVLEHMVDTVLYFEGDRHS-----RYRILRSVK 256 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEEEcccc----------cccCchheeeeeeEEEEEeccCCC-----ceeeeehhc
Confidence 45688999999999999999999999944443 278889999999999999877642 356777889
Q ss_pred eeCCCcceeeeEEEE
Q 005204 683 VRNKVVGTIGEAFLS 697 (709)
Q Consensus 683 ~R~g~~G~~g~~~l~ 697 (709)
||+|.++++|.+.|.
T Consensus 257 NRFG~t~EiGvFeM~ 271 (456)
T COG1066 257 NRFGATNELGVFEMT 271 (456)
T ss_pred ccCCcccceeEEEEe
Confidence 999999999977664
No 31
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.86 E-value=2e-20 Score=201.90 Aligned_cols=197 Identities=17% Similarity=0.216 Sum_probs=150.5
Q ss_pred Ccccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCc
Q 005204 447 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 524 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~ 524 (709)
....++||+++||++++ +.+|++++|+|+||+|||+|++|++.+++.+ |.+|+|++.|++..++..|... .+...
T Consensus 60 ~~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EEs~~qi~~Ra~r--lg~~~ 136 (372)
T cd01121 60 EEERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEESPEQIKLRADR--LGIST 136 (372)
T ss_pred ccCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCcCHHHHHHHHHH--cCCCc
Confidence 44689999999999997 9999999999999999999999999999987 8999999999999988766432 22211
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCC-CCCCHH
Q 005204 525 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP-VSQTET 603 (709)
Q Consensus 525 ~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~-~~~~~~ 603 (709)
+.++++ ...++++|.+.+ .+.++++||||++..+..... ......
T Consensus 137 -------------------------~~l~l~-----~e~~le~I~~~i----~~~~~~lVVIDSIq~l~~~~~~~~~g~~ 182 (372)
T cd01121 137 -------------------------ENLYLL-----AETNLEDILASI----EELKPDLVIIDSIQTVYSSELTSAPGSV 182 (372)
T ss_pred -------------------------ccEEEE-----ccCcHHHHHHHH----HhcCCcEEEEcchHHhhccccccCCCCH
Confidence 112232 223466665544 457899999998877754321 122234
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEee
Q 005204 604 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 683 (709)
Q Consensus 604 ~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~ 683 (709)
..+.+++..|.++|++++++|++++|..+.. .++|+..+++.+|.||.++.++.. ..+.+.+.|+
T Consensus 183 ~qvr~~~~~L~~lak~~~itvilvghvtk~g----------~~aG~~~leh~vD~Vi~le~~~~~-----~~R~Lri~Kn 247 (372)
T cd01121 183 SQVRECTAELMRFAKERNIPIFIVGHVTKEG----------SIAGPKVLEHMVDTVLYFEGDRHS-----EYRILRSVKN 247 (372)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEeeccCCC----------cccCcccchhhceEEEEEEcCCCC-----cEEEEEEEeC
Confidence 5578889999999999999999999954432 256778899999999999876531 3577899999
Q ss_pred eCCCcceeeeEE
Q 005204 684 RNKVVGTIGEAF 695 (709)
Q Consensus 684 R~g~~G~~g~~~ 695 (709)
|++.+++++.+.
T Consensus 248 R~g~~~ei~~F~ 259 (372)
T cd01121 248 RFGSTNELGVFE 259 (372)
T ss_pred CCCCCCCEEEEE
Confidence 999988876543
No 32
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.85 E-value=5.6e-20 Score=190.52 Aligned_cols=209 Identities=17% Similarity=0.193 Sum_probs=148.0
Q ss_pred ccccccchhhhhhh---------------c-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHH
Q 005204 449 FGISTGWRALNELY---------------N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 512 (709)
Q Consensus 449 ~gi~tg~~~LD~ll---------------~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~ 512 (709)
-|++||++.||+++ | +++|.+++|+|+||+|||+|++|++.+.+.+ |.+|+|+|+|++.+.+.
T Consensus 2 ~~~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee~~~~~~ 80 (259)
T TIGR03878 2 FGVPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVESPANFVY 80 (259)
T ss_pred CCccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCchHHH
Confidence 47899999999998 6 9999999999999999999999999999987 99999999999988777
Q ss_pred HHHHHHHcCCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCC--CCCHHHHHHHHHHHHHhcCCcEEEEccCc
Q 005204 513 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDS--LPSIKWVLDLAKAAVLRHGVRGLVIDPYN 590 (709)
Q Consensus 513 ~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~--~~~i~~i~~~i~~~~~~~~~~lIVID~~~ 590 (709)
.++........ +..+ .+.++++++...... ..+++++...+...+.++++++|||||++
T Consensus 81 ~~l~~~a~~~g------------~d~~-------~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls 141 (259)
T TIGR03878 81 TSLKERAKAMG------------VDFD-------KIEENIILIDAASSTELRENVPNLLATLAYAIKEYKVKNTVIDSIT 141 (259)
T ss_pred HHHHHHHHHcC------------CCHH-------HHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHhhCCCEEEEcCch
Confidence 66644332221 1111 122345555322100 13467788888888889999999999998
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCC--
Q 005204 591 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP-- 668 (709)
Q Consensus 591 ~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~-- 668 (709)
.+... ......+++.+|..+++++++++++++|.+..... ... +..+...+++.||.+|.|......
T Consensus 142 ~l~~~------~~~~~r~~~~~L~~~lk~~~~t~ll~~e~~~~~~~----~~~-~~~~~~~~~~l~D~vI~L~~~~~~~~ 210 (259)
T TIGR03878 142 GLYEA------KEMMAREIVRQLFNFMKKWYQTALFVSQKRSGHEE----LSA-EAAGGYAVSHIVDGTIVLAKQLIMSR 210 (259)
T ss_pred Hhccc------chHHHHHHHHHHHHHHHHcCCeEEEEeccccCccc----ccc-cccCCcceeEeeccEEEEeeeeccch
Confidence 77432 12335677888999999999999999994432210 111 233444689999999999853211
Q ss_pred -------CCCCCCeEEEEEEeeeCCCc
Q 005204 669 -------EAGPIDRVQVCVRKVRNKVV 688 (709)
Q Consensus 669 -------e~~~~~~~~l~v~K~R~g~~ 688 (709)
+....-.+.+.|.|.|....
T Consensus 211 ~~~~~~~~~~~~~~R~l~I~KmRg~~h 237 (259)
T TIGR03878 211 FDASLYKKPIGEIVRLFRIDGCRMCGH 237 (259)
T ss_pred hhhhhccccccceEEEEEEEEccCCCC
Confidence 11112246689999998643
No 33
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.84 E-value=9.5e-20 Score=202.10 Aligned_cols=198 Identities=18% Similarity=0.247 Sum_probs=149.4
Q ss_pred Ccccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCc
Q 005204 447 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 524 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~ 524 (709)
...+++||+++||++++ +++|++++|+|+||+|||+|++|++.+++.+ |.+|+|+|+|++..++..|... .+.+.
T Consensus 72 ~~~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EEs~~qi~~ra~r--lg~~~ 148 (454)
T TIGR00416 72 EVPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEESLQQIKMRAIR--LGLPE 148 (454)
T ss_pred ccCccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcCCHHHHHHHHHH--cCCCh
Confidence 45689999999999996 9999999999999999999999999999987 8899999999999988777532 12111
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCC-CCCCHH
Q 005204 525 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP-VSQTET 603 (709)
Q Consensus 525 ~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~-~~~~~~ 603 (709)
+.++++ ...++++|.+.+ .+.++++||||+++.+..... ......
T Consensus 149 -------------------------~~l~~~-----~e~~~~~I~~~i----~~~~~~~vVIDSIq~l~~~~~~~~~g~~ 194 (454)
T TIGR00416 149 -------------------------PNLYVL-----SETNWEQICANI----EEENPQACVIDSIQTLYSPDISSAPGSV 194 (454)
T ss_pred -------------------------HHeEEc-----CCCCHHHHHHHH----HhcCCcEEEEecchhhcccccccCCCCH
Confidence 112232 123456555444 457899999998887754321 111223
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEee
Q 005204 604 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 683 (709)
Q Consensus 604 ~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~ 683 (709)
..+.+++..|.++|+++|+++++++|..+.. .++|+..+++.+|.|+.|+..+. ...+.+.+.|+
T Consensus 195 ~q~r~~~~~L~~~ak~~giTvllt~hvtkeg----------~~aG~~~le~lvD~VI~Le~~~~-----~~~R~L~v~K~ 259 (454)
T TIGR00416 195 SQVRECTAELMRLAKTRGIAIFIVGHVTKEG----------SIAGPKVLEHMVDTVLYFEGDRD-----SRFRILRSVKN 259 (454)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEeccccCC----------ccCCcccEeeeceEEEEEeccCC-----CcEEEEEEecC
Confidence 4467888899999999999999999943321 25677889999999999987442 22567889999
Q ss_pred eCCCcceeeeEEE
Q 005204 684 RNKVVGTIGEAFL 696 (709)
Q Consensus 684 R~g~~G~~g~~~l 696 (709)
|.|.+++++.+.+
T Consensus 260 R~g~~~e~~~f~i 272 (454)
T TIGR00416 260 RFGATNEIGIFEM 272 (454)
T ss_pred CCCCCCcEEEEEE
Confidence 9999888775544
No 34
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.83 E-value=1.9e-19 Score=199.68 Aligned_cols=197 Identities=19% Similarity=0.222 Sum_probs=147.9
Q ss_pred Ccccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCc
Q 005204 447 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 524 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~ 524 (709)
...+++||+++||++++ +.+|++++|+|+||+|||+|++|++.+++.+ |.+|+|+++|++.+++..|+. ..+.+.
T Consensus 58 ~~~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~qi~~ra~--rlg~~~ 134 (446)
T PRK11823 58 EEPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESASQIKLRAE--RLGLPS 134 (446)
T ss_pred cCCcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHHHHHHHHH--HcCCCh
Confidence 45689999999999997 9999999999999999999999999999976 899999999999999877742 223211
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCC-CCCCHH
Q 005204 525 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP-VSQTET 603 (709)
Q Consensus 525 ~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~-~~~~~~ 603 (709)
. .++++ ...+++++++.+ .+.++++||||+++.+..... ......
T Consensus 135 ~-------------------------~l~~~-----~e~~l~~i~~~i----~~~~~~lVVIDSIq~l~~~~~~~~~g~~ 180 (446)
T PRK11823 135 D-------------------------NLYLL-----AETNLEAILATI----EEEKPDLVVIDSIQTMYSPELESAPGSV 180 (446)
T ss_pred h-------------------------cEEEe-----CCCCHHHHHHHH----HhhCCCEEEEechhhhccccccCCCCCH
Confidence 1 12222 223456655544 456899999998887754321 112233
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEee
Q 005204 604 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 683 (709)
Q Consensus 604 ~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~ 683 (709)
..+.+++..|.++|+++|+++++++|..+.. .++|+..+++.+|.++.++.+.. ...+.+.+.|+
T Consensus 181 ~qvr~~~~~L~~~ak~~~itvilv~hvtk~~----------~~ag~~~lehlvD~Vi~le~~~~-----~~~R~l~i~K~ 245 (446)
T PRK11823 181 SQVRECAAELMRLAKQRGIAVFLVGHVTKEG----------AIAGPRVLEHMVDTVLYFEGDRH-----SRYRILRAVKN 245 (446)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeeccCCC----------CcCCcchhhhhCeEEEEEEcCCC-----CceEEEEEccC
Confidence 4577888999999999999999999943321 14567789999999999875321 23567899999
Q ss_pred eCCCcceeeeEE
Q 005204 684 RNKVVGTIGEAF 695 (709)
Q Consensus 684 R~g~~G~~g~~~ 695 (709)
|.+++++.+.+.
T Consensus 246 R~g~~~e~~~f~ 257 (446)
T PRK11823 246 RFGATNEIGVFE 257 (446)
T ss_pred CCCCCCceEEEE
Confidence 999988776443
No 35
>PRK05973 replicative DNA helicase; Provisional
Probab=99.83 E-value=4.7e-20 Score=186.10 Aligned_cols=169 Identities=18% Similarity=0.230 Sum_probs=127.9
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCC
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 535 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~ 535 (709)
..|+++| +++|.+++|+|+||+|||+|++|++.+.+.+ |.+|+|||+||+++++..|+.+. |++..
T Consensus 53 p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes~~~i~~R~~s~--g~d~~---------- 119 (237)
T PRK05973 53 PAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYTEQDVRDRLRAL--GADRA---------- 119 (237)
T ss_pred CHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCCHHHHHHHHHHc--CCChH----------
Confidence 3688888 9999999999999999999999999999987 99999999999999999999765 33221
Q ss_pred CCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHH
Q 005204 536 MTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR 615 (709)
Q Consensus 536 l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~ 615 (709)
++. + .+.+.. .+..+.+++ +++++.++++++||||++..+ ... .+...+..++..|+.
T Consensus 120 ----~~~-------~-~~~~d~--~d~~~~~~i---i~~l~~~~~~~lVVIDsLq~l-~~~----~~~~el~~~~~~Lk~ 177 (237)
T PRK05973 120 ----QFA-------D-LFEFDT--SDAICADYI---IARLASAPRGTLVVIDYLQLL-DQR----REKPDLSVQVRALKS 177 (237)
T ss_pred ----Hhc-------c-ceEeec--CCCCCHHHH---HHHHHHhhCCCEEEEEcHHHH-hhc----ccchhHHHHHHHHHH
Confidence 111 1 122211 122344544 344455678999999955444 321 112235677888999
Q ss_pred HHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEee
Q 005204 616 FAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664 (709)
Q Consensus 616 lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r 664 (709)
+|+++|++||+++| +|..+.+.+++|.++|++ +.+-+|..++..+
T Consensus 178 ~Ak~~gitvIl~sQl~r~~e~~~~~~P~laDlR----~~~~~d~~~f~~~ 223 (237)
T PRK05973 178 FARERGLIIVFISQIDRSFDPSAKPLPDIRDVR----LPNPLDLSLFDKA 223 (237)
T ss_pred HHHhCCCeEEEEecCccccccCCCCCCChhhcC----CCChhhHHHhhhh
Confidence 99999999999999 999888888999999998 4678888877654
No 36
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.82 E-value=1.2e-18 Score=178.61 Aligned_cols=211 Identities=15% Similarity=0.208 Sum_probs=144.9
Q ss_pred cccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCcccc
Q 005204 450 GISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 527 (709)
Q Consensus 450 gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i 527 (709)
.++||++.||++++ +++|.+++|+|+||+|||+|++|++.+.+.+ |.+|+|+|+|++++++.+++.+. |.+....
T Consensus 2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~~~i~~~~~~~--g~~~~~~ 78 (237)
T TIGR03877 2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHPVQVRRNMAQF--GWDVRKY 78 (237)
T ss_pred ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCHHHHHHHHHHh--CCCHHHH
Confidence 47899999999885 9999999999999999999999999999876 99999999999999999987643 3332211
Q ss_pred ccCCCCCCCCH-HHHHHHHHHH-hcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHH
Q 005204 528 NYGGSAERMTV-EEFEQGKAWL-SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 605 (709)
Q Consensus 528 ~~g~~~~~l~~-e~~~~~~~~l-~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~ 605 (709)
... .++.. +......... ....+.+ ....+++++.+.++..+.+.++++|||||+..+... .. ..
T Consensus 79 ~~~---g~l~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~-----~~-~~ 145 (237)
T TIGR03877 79 EEE---GKFAIVDAFTGGIGEAAEREKYVV----KDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYIT-----KP-AM 145 (237)
T ss_pred hhc---CCEEEEeccccccccccccccccc----cCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcC-----Ch-HH
Confidence 100 00000 0000000000 0011111 123467888888888888889999999998877532 11 12
Q ss_pred HHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEeee
Q 005204 606 VSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 684 (709)
Q Consensus 606 ~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~R 684 (709)
..+++.+|+.+++++|+++++++| +..... +.+ ..+++.||.||.|...+... .-.+.+.|.|.|
T Consensus 146 ~r~~l~~l~~~lk~~~~t~llt~~~~~~~~~----------~~~-~~~~~~~D~vI~L~~~~~~~---~~~R~l~i~K~R 211 (237)
T TIGR03877 146 ARSIVMQLKRVLSGLGCTSIFVSQVSVGERG----------FGG-PGVEHAVDGIIRLDLDEIDG---ELKRSLIVWKMR 211 (237)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECccccccc----------ccc-cceEEEEeEEEEEEEEeeCC---ceEEEEEEEECC
Confidence 336778899999999999999999 432110 111 24678999999998765321 124679999999
Q ss_pred CCCcce
Q 005204 685 NKVVGT 690 (709)
Q Consensus 685 ~g~~G~ 690 (709)
....+.
T Consensus 212 g~~~~~ 217 (237)
T TIGR03877 212 GTKHSM 217 (237)
T ss_pred CCCCCC
Confidence 876544
No 37
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.80 E-value=2.9e-18 Score=174.55 Aligned_cols=206 Identities=19% Similarity=0.180 Sum_probs=146.5
Q ss_pred ccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcC------CeEEEEECCCC--HHHHHHHHHHHHc
Q 005204 451 ISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAG------WKFVLCSMENK--VREHARKLLEKHI 520 (709)
Q Consensus 451 i~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g------~~Vly~SlE~~--~~~~~~Rl~~~~~ 520 (709)
++||++.||++++ +++|+++.|+|+||+|||+|+++++.+.+.+ + ..|+|++.|.+ ++++.+.... .
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~-~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~--~ 77 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLP-GELGGLEGKVVYIDTEGAFRPERLVQLAVR--F 77 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcc-cccCCCcceEEEEecCCCCCHHHHHHHHHH--h
Confidence 5799999999985 9999999999999999999999999998876 6 89999999976 3333222111 1
Q ss_pred CCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHH---hcCCcEEEEccCcccccCCC
Q 005204 521 KKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL---RHGVRGLVIDPYNELDHQRP 597 (709)
Q Consensus 521 g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~---~~~~~lIVID~~~~l~~~~~ 597 (709)
+. .. +.+.++++++. ..+.+++...++.+.. ..++++||||++..+.....
T Consensus 78 ~~--------------~~-------~~~~~~i~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~ 131 (226)
T cd01393 78 GL--------------DP-------EEVLDNIYVAR-----PYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEF 131 (226)
T ss_pred cc--------------ch-------hhhhccEEEEe-----CCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhh
Confidence 10 00 11223445542 2356777766666554 67899999999988765321
Q ss_pred CC----CCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCC
Q 005204 598 VS----QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGP 672 (709)
Q Consensus 598 ~~----~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~ 672 (709)
.. ..+...+.+++..|+.+|++++++||+++| ........+. + .--.|+..+.+.+|..|.|.+.+...
T Consensus 132 ~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~~~~~~~~~-~--~~p~~G~~~~~~~~~ri~l~~~~~~~--- 205 (226)
T cd01393 132 IGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRAKVDVMFGD-P--ETPAGGNALAHASTTRLDLRKGRGII--- 205 (226)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEeeecccccCC-C--ccccCchhhhCcccEEEEEEecCCcc---
Confidence 11 123356788999999999999999999999 5444321111 1 11257789999999999999877432
Q ss_pred CCeEEEEEEeeeCCCccee
Q 005204 673 IDRVQVCVRKVRNKVVGTI 691 (709)
Q Consensus 673 ~~~~~l~v~K~R~g~~G~~ 691 (709)
...+.+.+.|++..+.|+.
T Consensus 206 ~~~r~~~~~k~~~~~~~~~ 224 (226)
T cd01393 206 GERRIAKVVKSPALPEAEA 224 (226)
T ss_pred CcEEEEEEEeCCCCCCccc
Confidence 2356799999998888764
No 38
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=99.79 E-value=6.4e-18 Score=171.98 Aligned_cols=197 Identities=17% Similarity=0.207 Sum_probs=135.7
Q ss_pred cccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC-CCHHHHHHHHHHHHcCCCccc
Q 005204 450 GISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME-NKVREHARKLLEKHIKKPFFE 526 (709)
Q Consensus 450 gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE-~~~~~~~~Rl~~~~~g~~~~~ 526 (709)
.++||++.||++++ +++|.+++|+|+||+|||+|++|++.+++.. |.+|+|+++| ++++++.+.. . . +
T Consensus 4 ~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~-~~~v~yi~~e~~~~~r~~~~~-~---~-~--- 74 (225)
T PRK09361 4 RLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN-GKKVIYIDTEGLSPERFKQIA-G---E-D--- 74 (225)
T ss_pred cccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEECCCCCHHHHHHHH-h---h-C---
Confidence 58999999999995 9999999999999999999999999999987 9999999999 4454432211 1 0 0
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHH---HHHhcCCcEEEEccCcccccCC--C--CC
Q 005204 527 ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA---AVLRHGVRGLVIDPYNELDHQR--P--VS 599 (709)
Q Consensus 527 i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~---~~~~~~~~lIVID~~~~l~~~~--~--~~ 599 (709)
+. + +.++++++. ..+.+++.+.++. +.. .++++||||++..+.... . ..
T Consensus 75 --------------~~---~-~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~-~~~~lvVIDsi~al~~~~~~~~~~~ 130 (225)
T PRK09361 75 --------------FE---E-LLSNIIIFE-----PSSFEEQSEAIRKAEKLAK-ENVGLIVLDSATSLYRLELEDEEDN 130 (225)
T ss_pred --------------hH---h-HhhCeEEEe-----CCCHHHHHHHHHHHHHHHH-hcccEEEEeCcHHHhHHHhcCCccH
Confidence 01 1 112344442 2344444333333 332 689999999988765421 1 11
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEE
Q 005204 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQV 678 (709)
Q Consensus 600 ~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l 678 (709)
....+.+.+++..|+++|+++|++|++++| ....... . ....|+..+++.+|.++.|.+.+. +.+.+
T Consensus 131 ~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~~~~~~-----~-~~~~gg~~~~~~~d~ii~l~~~~~------~~r~~ 198 (225)
T PRK09361 131 SKLNRELGRQLTHLLKLARKHDLAVVITNQVYSDIDSD-----G-LRPLGGHTLEHWSKTILRLEKFRN------GKRRA 198 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEEccceecCCCC-----c-ccCCCcchhhhhccEEEEEEEccC------CeEEE
Confidence 112345677778899999999999999999 4333211 1 112466779999999999988321 24667
Q ss_pred EEEeeeCCCccee
Q 005204 679 CVRKVRNKVVGTI 691 (709)
Q Consensus 679 ~v~K~R~g~~G~~ 691 (709)
.+.|.|..+.|..
T Consensus 199 ~i~k~~~~~~~~~ 211 (225)
T PRK09361 199 TLEKHRSRPEGES 211 (225)
T ss_pred EEEECCCCCCCCe
Confidence 7899888777665
No 39
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.79 E-value=3.5e-18 Score=174.08 Aligned_cols=210 Identities=18% Similarity=0.202 Sum_probs=145.4
Q ss_pred ccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccc
Q 005204 451 ISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN 528 (709)
Q Consensus 451 i~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~ 528 (709)
++||++.||++++ +++|.+++|.|+||+|||+|++|++.+.+.+.|.+|+|+|+|++++++.+++.+ .|.+..+
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s--~g~d~~~-- 76 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKS--FGWDLEE-- 76 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHT--TTS-HHH--
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHH--cCCcHHH--
Confidence 5899999999995 999999999999999999999999999988669999999999999999888753 2322211
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCcceEEecCCC----CCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHH
Q 005204 529 YGGSAERMTVEEFEQGKAWLSNTFSLIRCENDS----LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 604 (709)
Q Consensus 529 ~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~----~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~ 604 (709)
..+ ...+.++...... ..+++.+...+...+.+.++++|||||+..+.... ...
T Consensus 77 ---------------~~~--~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~-----~~~ 134 (226)
T PF06745_consen 77 ---------------YED--SGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYD-----DPE 134 (226)
T ss_dssp ---------------HHH--TTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSS-----SGG
T ss_pred ---------------Hhh--cCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcC-----CHH
Confidence 110 1234444322111 35688899999998888899999999999883211 122
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhc-ccceEEEEeeCCCCCCCCCCeEEEEEEee
Q 005204 605 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFIN-KCDNGIVIHRNRDPEAGPIDRVQVCVRKV 683 (709)
Q Consensus 605 ~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~-~AD~vl~l~r~~~~e~~~~~~~~l~v~K~ 683 (709)
....++..|....++.|++++++.|...... -.+...++. .||.+|.|...+... .-.+.|.|.|.
T Consensus 135 ~~r~~l~~l~~~l~~~~~t~llt~~~~~~~~----------~~~~~~i~~~l~D~vI~L~~~~~~~---~~~R~l~I~K~ 201 (226)
T PF06745_consen 135 ELRRFLRALIKFLKSRGVTTLLTSEMPSGSE----------DDGTFGIEHYLADGVIELRYEEEGG---RIRRRLRIVKM 201 (226)
T ss_dssp GHHHHHHHHHHHHHHTTEEEEEEEEESSSSS----------SSSSTSHHHHHSSEEEEEEEEEETT---EEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEccccCcc----------cccccchhhhcccEEEEEEEEeeCC---EEEEEEEEEEc
Confidence 3556788888899999999999999432211 112334666 999999999765332 23578999999
Q ss_pred eCCCcceeeeEEEEEEc
Q 005204 684 RNKVVGTIGEAFLSYNR 700 (709)
Q Consensus 684 R~g~~G~~g~~~l~fd~ 700 (709)
|...... +..++...+
T Consensus 202 Rg~~~~~-~~~~f~I~~ 217 (226)
T PF06745_consen 202 RGSRHST-GIHPFEITP 217 (226)
T ss_dssp TTS-----BEEEEEEET
T ss_pred CCCCCCC-cEEEEEEEC
Confidence 9875432 334454444
No 40
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=99.79 E-value=1.3e-17 Score=168.97 Aligned_cols=197 Identities=18% Similarity=0.175 Sum_probs=133.5
Q ss_pred ccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccc
Q 005204 451 ISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN 528 (709)
Q Consensus 451 i~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~ 528 (709)
++||++.||++++ +++|.+++|+|+||+|||+|++|++.+++.+ |.+|+|++.|....+..+++...
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~-g~~v~yi~~e~~~~~~~~~~~~~---------- 69 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYIDTEGLSSERFRQIAGD---------- 69 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHhH----------
Confidence 5899999999995 9999999999999999999999999999887 99999999987654322222110
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHH---HHHHHHHhcCCcEEEEccCcccccCCCCC----CC
Q 005204 529 YGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLD---LAKAAVLRHGVRGLVIDPYNELDHQRPVS----QT 601 (709)
Q Consensus 529 ~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~---~i~~~~~~~~~~lIVID~~~~l~~~~~~~----~~ 601 (709)
. .+.+..+++++. ..+.+++.. .+.... ..++++||||++..+....... ..
T Consensus 70 ------~---------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~lvvIDsi~~l~~~~~~~~~~~~~ 128 (218)
T cd01394 70 ------R---------PERAASSIIVFE-----PMDFNEQGRAIQETETFA-DEKVDLVVVDSATALYRLELGDDDTTIK 128 (218)
T ss_pred ------C---------hHhhhcCEEEEe-----CCCHHHHHHHHHHHHHHH-hcCCcEEEEechHHhhhHHhcCccchHH
Confidence 0 011223444442 123344433 333322 2459999999998875321111 11
Q ss_pred HHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEE
Q 005204 602 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCV 680 (709)
Q Consensus 602 ~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v 680 (709)
....+.+++..|+.+|+++||+||+++| ++.... ...+| .|+..+.+.+|.+|.|.+.+.. .....+
T Consensus 129 ~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~-~~~~p-----~~g~~~~~~~d~~i~l~~~~~~------~r~~~~ 196 (218)
T cd01394 129 NYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGS-GSVRP-----LGGHTLEHWSKVILRLEKLRVG------TRRAVL 196 (218)
T ss_pred HHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCC-Ccccc-----cCCcchhcceeEEEEEEEcCCC------eEEEEE
Confidence 2335677788899999999999999999 544432 11222 2556789999999999987621 233447
Q ss_pred EeeeCCCccee
Q 005204 681 RKVRNKVVGTI 691 (709)
Q Consensus 681 ~K~R~g~~G~~ 691 (709)
.|.|..+.+..
T Consensus 197 ~~~~~~~~~~~ 207 (218)
T cd01394 197 EKHRFRPEGSS 207 (218)
T ss_pred eeCCCCCCCce
Confidence 77777766654
No 41
>PRK04328 hypothetical protein; Provisional
Probab=99.78 E-value=1.8e-17 Score=170.88 Aligned_cols=213 Identities=15% Similarity=0.204 Sum_probs=144.4
Q ss_pred ccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccc
Q 005204 449 FGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 526 (709)
Q Consensus 449 ~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~ 526 (709)
..++||++.||++++ +++|.+++|+|+||+|||+|++|++.+.+.+ |.+++|+|+|++++++.+++.+. |.+...
T Consensus 3 ~rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~ee~~~~i~~~~~~~--g~d~~~ 79 (249)
T PRK04328 3 KRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVALEEHPVQVRRNMRQF--GWDVRK 79 (249)
T ss_pred ceecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEeeCCHHHHHHHHHHc--CCCHHH
Confidence 458999999999996 9999999999999999999999999998877 99999999999999988776543 333221
Q ss_pred cccCCCCCCCCH-HHHHHHHH-HHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHH
Q 005204 527 ANYGGSAERMTV-EEFEQGKA-WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 604 (709)
Q Consensus 527 i~~g~~~~~l~~-e~~~~~~~-~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~ 604 (709)
.... ..+.. +.+..... ......+.+ ....+++.+...+...+.+.++++|||||+..+... + ..
T Consensus 80 ~~~~---~~l~iid~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~-----~-~~ 146 (249)
T PRK04328 80 YEEE---GKFAIVDAFTGGIGSAAKREKYVV----KDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLT-----K-PA 146 (249)
T ss_pred Hhhc---CCEEEEeccccccccccccccccc----cCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcC-----C-hH
Confidence 1100 00000 00000000 000001111 122356778888888888889999999999877532 1 12
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEeee
Q 005204 605 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 684 (709)
Q Consensus 605 ~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~R 684 (709)
...+++..|..+++++|+++++++|...... .+.| ..+++.||.||.|...+... ...+.+.|.|.|
T Consensus 147 ~~r~~~~~l~~~lk~~g~t~llt~e~~~~~~---------~~~~-~~~~~~~D~vI~L~~~~~~~---~~~R~l~I~K~R 213 (249)
T PRK04328 147 MARSIVMQLKRVLSGLGCTAIFVSQVSVGER---------GFGG-PGVEHAVDGIIRLDLDEIDG---ELKRSLIVWKMR 213 (249)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECcccccc---------ccCC-CCcEEEEEEEEEEEEEecCC---cEEEEEEEEEcc
Confidence 2346778888889999999999999432211 0112 34678899999998765321 124679999999
Q ss_pred CCCcce
Q 005204 685 NKVVGT 690 (709)
Q Consensus 685 ~g~~G~ 690 (709)
....+.
T Consensus 214 g~~~~~ 219 (249)
T PRK04328 214 GTKHSM 219 (249)
T ss_pred CCCCCC
Confidence 876554
No 42
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.77 E-value=4.6e-17 Score=166.13 Aligned_cols=197 Identities=18% Similarity=0.128 Sum_probs=140.2
Q ss_pred ccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccc
Q 005204 451 ISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN 528 (709)
Q Consensus 451 i~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~ 528 (709)
++||++.||++++ +++|++++|+|+||+|||+|+.+++.+.+.+ |.+|+|+++|++++++.+++ ...|.++.++.
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~e~~~~~i~~~~--~~~g~~~~~~~ 78 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTTEESRESIIRQA--AQFGMDFEKAI 78 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHHHH--HHhCCCHHHHh
Confidence 6899999999984 9999999999999999999999999988876 99999999999999887773 33454443221
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCcceEEec--------CCCCCCHHHHHHHHHHHHHhc--CCcEEEEccCcccccCCCC
Q 005204 529 YGGSAERMTVEEFEQGKAWLSNTFSLIRCE--------NDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPV 598 (709)
Q Consensus 529 ~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~--------~~~~~~i~~i~~~i~~~~~~~--~~~lIVID~~~~l~~~~~~ 598 (709)
. ...+.++... .....+++++...++.++.+. +++++|||++..+...
T Consensus 79 ~-------------------~~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~--- 136 (229)
T TIGR03881 79 E-------------------EGKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLD--- 136 (229)
T ss_pred h-------------------cCCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhcc---
Confidence 0 0011111000 012356888999998887765 4789999987766431
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEE
Q 005204 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQV 678 (709)
Q Consensus 599 ~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l 678 (709)
. .....+++..|+.+++++|+++++++|...... .+ ....+++.||.||.|...+... .-.+.+
T Consensus 137 -~--~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~----~~------~~~~~~~l~D~vI~L~~~~~~~---~~~R~i 200 (229)
T TIGR03881 137 -K--PAMARKYSYYLKRVLNRWNFTILLTSQYAITTS----QA------FGFGIEHVADGIIRFRKVVVDG---ELRRYL 200 (229)
T ss_pred -C--hHHHHHHHHHHHHHHHhCCCEEEEEecccccCC----CC------cccceEEEEeEEEEEEEeccCC---cEEEEE
Confidence 1 122356778899999999999999999322211 00 1124788999999998765321 224679
Q ss_pred EEEeeeCCCc
Q 005204 679 CVRKVRNKVV 688 (709)
Q Consensus 679 ~v~K~R~g~~ 688 (709)
.|.|.|....
T Consensus 201 ~i~K~R~~~~ 210 (229)
T TIGR03881 201 IVEKMRQTNH 210 (229)
T ss_pred EEEeccCCCC
Confidence 9999988644
No 43
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.77 E-value=6.4e-18 Score=167.63 Aligned_cols=169 Identities=22% Similarity=0.260 Sum_probs=100.8
Q ss_pred Ccccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHh---------cCCeEEEEECCCCHHHHHHHH
Q 005204 447 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH---------AGWKFVLCSMENKVREHARKL 515 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~---------~g~~Vly~SlE~~~~~~~~Rl 515 (709)
...+++++++.+|.+++ +++|++++|+|+||+|||+|+++++.+++.. .+.+|+|+++|++..++.+|+
T Consensus 10 ~~~~~~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl 89 (193)
T PF13481_consen 10 SFEDLDTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRL 89 (193)
T ss_dssp ---HHHS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHH
T ss_pred hhhhccCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHH
Confidence 44568899999999998 7899999999999999999999999999973 267999999999999999998
Q ss_pred HHHHcCCCccccccCCCCCCCCHHHHHHHHHHHh-cCcceEEecCCCCCCHHHHHHHHHHHHHh-cCCcEEEEccCcccc
Q 005204 516 LEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS-NTFSLIRCENDSLPSIKWVLDLAKAAVLR-HGVRGLVIDPYNELD 593 (709)
Q Consensus 516 ~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~-~~~~~i~~~~~~~~~i~~i~~~i~~~~~~-~~~~lIVID~~~~l~ 593 (709)
.....+. ...+...+..... ....++. ........+..++.+.+.+.+ +++++||||++..+.
T Consensus 90 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~ 154 (193)
T PF13481_consen 90 RALLQDY--------------DDDANLFFVDLSNWGCIRLFE-PDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLH 154 (193)
T ss_dssp HHHHTTS---------------HHHHHHHHHH--E-EE---T-TS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG-
T ss_pred HHHhccc--------------CCccceEEeeccccccceeee-cccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHh
Confidence 7765332 1112222211111 1111211 112222345566666666666 789999999999887
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCC
Q 005204 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQL 633 (709)
Q Consensus 594 ~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~ 633 (709)
.. ..+....+.+++..|+++|+++|++|++++|.+|.
T Consensus 155 ~~---~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K~ 191 (193)
T PF13481_consen 155 DG---DENSNSAVAQLMQELKRLAKEYGVAVILVHHTNKS 191 (193)
T ss_dssp -S----TT-HHHHHHHHHHHHHHHHHH--EEEEEEEE---
T ss_pred cC---CCCCHHHHHHHHHHHHHHHHHcCCEEEEEECCCCC
Confidence 64 34444555899999999999999999999995554
No 44
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=99.76 E-value=4.4e-17 Score=171.43 Aligned_cols=217 Identities=17% Similarity=0.096 Sum_probs=156.2
Q ss_pred Ccccccccchhhhhhhc---cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCC
Q 005204 447 DEFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 523 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~---l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~ 523 (709)
....++||++.||.+++ +++|.++.|+|+||+|||+|++|++.+++.. |.+|+|+++|.+...- + +...|++
T Consensus 32 ~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~-g~~~vyId~E~~~~~~--~--a~~lGvd 106 (325)
T cd00983 32 DVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL-GGTVAFIDAEHALDPV--Y--AKKLGVD 106 (325)
T ss_pred CCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEECccccHHHH--H--HHHcCCC
Confidence 44679999999999975 9999999999999999999999999999887 9999999999987642 1 2222332
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCC--CCCC-
Q 005204 524 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR--PVSQ- 600 (709)
Q Consensus 524 ~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~--~~~~- 600 (709)
.. ++++. ...+.++....++.++++..+++|||||+..+.... ....
T Consensus 107 ~~-------------------------~l~v~-----~p~~~eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~ 156 (325)
T cd00983 107 LD-------------------------NLLIS-----QPDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMG 156 (325)
T ss_pred HH-------------------------Hheec-----CCCCHHHHHHHHHHHHhccCCCEEEEcchHhhccccccccccc
Confidence 21 12222 123567778888888888899999999999887421 1111
Q ss_pred -----CHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCC---CCCCC
Q 005204 601 -----TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD---PEAGP 672 (709)
Q Consensus 601 -----~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~---~e~~~ 672 (709)
.....+.++++.|..+++++|++||+++|.+..-+.... +...-.|+..+.+.+...+.+.+.+. .+..-
T Consensus 157 ~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~ig~~~g--~~e~~~GG~~L~~~ss~rl~lrk~~~~k~~~~~~ 234 (325)
T cd00983 157 DSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKIGVMFG--NPETTTGGNALKFYSSVRLDIRRIETIKDGDEVI 234 (325)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEccccccccccC--CCccCCCchHHhhhcceEEEEEeecccccCCccc
Confidence 112346778889999999999999999995443221111 11223466779999999999988652 11112
Q ss_pred CCeEEEEEEeeeCCCcceeeeEEEEEEc
Q 005204 673 IDRVQVCVRKVRNKVVGTIGEAFLSYNR 700 (709)
Q Consensus 673 ~~~~~l~v~K~R~g~~G~~g~~~l~fd~ 700 (709)
.+.+.+.+.|||-.+.+..-.+.+.|+.
T Consensus 235 G~~~~~~v~Knk~~~p~~~~~~~i~~~~ 262 (325)
T cd00983 235 GNRTKVKVVKNKVAPPFKTAEFDILFGE 262 (325)
T ss_pred ccEEEEEEEecccCCCCCceEEEEEcCc
Confidence 3457899999999988876556666654
No 45
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=99.75 E-value=2.3e-17 Score=175.59 Aligned_cols=238 Identities=15% Similarity=0.133 Sum_probs=158.7
Q ss_pred CccceeeeccccccccccccccccchhhhhhhcccCCCcccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHH
Q 005204 410 GALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDAL 487 (709)
Q Consensus 410 e~l~~~l~~A~~~~~~~l~~~~d~~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~ql 487 (709)
+...++++.+......+..+..+++.. ......++||++.||++++ ++.|.+|.|+|+||+|||+|++|+
T Consensus 75 ~~~~ki~~~a~~~~~~~~~ta~~~~~~--------~~~~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lql 146 (344)
T PLN03187 75 AKVDKICEAAEKLLNQGFITGSDALLK--------RKSVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTL 146 (344)
T ss_pred HHHHHHHHHHHHhhcccCCcHHHHHhh--------hccCceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHH
Confidence 344555555554433344444444322 1345679999999999998 999999999999999999999999
Q ss_pred HHHHHHh-----cCCeEEEEECCC--CHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCC
Q 005204 488 ICNINEH-----AGWKFVLCSMEN--KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEND 560 (709)
Q Consensus 488 a~~~a~~-----~g~~Vly~SlE~--~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~ 560 (709)
+.+.+.. .+.+|+|+++|. +++++.+.... .|.+ .++ .+ +++++.
T Consensus 147 av~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~--~g~d--------------~~~------~l-~~I~~~----- 198 (344)
T PLN03187 147 CVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAER--FGMD--------------ADA------VL-DNIIYA----- 198 (344)
T ss_pred HHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHH--cCCC--------------hhh------hc-CeEEEe-----
Confidence 9988742 136999999998 58877665432 2221 111 11 223333
Q ss_pred CCCCHHHHHHHH---HHHHHhcCCcEEEEccCcccccCCCC--C--CCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCC
Q 005204 561 SLPSIKWVLDLA---KAAVLRHGVRGLVIDPYNELDHQRPV--S--QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQ 632 (709)
Q Consensus 561 ~~~~i~~i~~~i---~~~~~~~~~~lIVID~~~~l~~~~~~--~--~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk 632 (709)
...+.+++...+ ...+.+.++++|||||+..++..... + ..+.+.+.+++..|+++|+++|++|++++| ..+
T Consensus 199 ~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTNqv~~~ 278 (344)
T PLN03187 199 RAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIAD 278 (344)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEecEEEc
Confidence 234555544433 33455678999999999988764211 1 112345778899999999999999999999 433
Q ss_pred CCCC-CCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEeeeCCCccee
Q 005204 633 LHNW-VGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI 691 (709)
Q Consensus 633 ~~~~-~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~R~g~~G~~ 691 (709)
.... ....| ..-.|+..+.+.++..+.|.+.+. +.+.+.|.|.++.+.|..
T Consensus 279 ~~~~~~~~~~--~~pagG~~~~h~~~~Rl~l~k~~~------~~R~~~v~ksp~lp~~~~ 330 (344)
T PLN03187 279 PGGGMFISDP--KKPAGGHVLAHAATIRLMLRKGKG------EQRVCKVFDAPNLPEAEA 330 (344)
T ss_pred CCcccccCCC--CCCCCchhhheeeeEEEEEEcCCC------CeEEEEEEECCCCCCceE
Confidence 3211 00111 123467789999999999987542 246789999999887773
No 46
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=99.75 E-value=3.2e-17 Score=172.44 Aligned_cols=217 Identities=17% Similarity=0.093 Sum_probs=154.8
Q ss_pred Ccccccccchhhhhhh--c-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCC
Q 005204 447 DEFGISTGWRALNELY--N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 523 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll--~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~ 523 (709)
....++||++.||.++ | +++|.+++|+|+||+|||+|++|++.+++.+ |.+|+||++|.+.... .+...|++
T Consensus 32 ~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~-g~~v~yId~E~~~~~~----~a~~lGvd 106 (321)
T TIGR02012 32 DVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHALDPV----YARKLGVD 106 (321)
T ss_pred cCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEcccchhHHH----HHHHcCCC
Confidence 3467999999999998 4 9999999999999999999999999999987 9999999999887753 22333443
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCC--CCC--
Q 005204 524 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR--PVS-- 599 (709)
Q Consensus 524 ~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~--~~~-- 599 (709)
.. ++++. ...+.++....+..++++.++++|||||+..+.... ...
T Consensus 107 ~~-------------------------~l~v~-----~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g 156 (321)
T TIGR02012 107 ID-------------------------NLLVS-----QPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMG 156 (321)
T ss_pred HH-------------------------HeEEe-----cCCCHHHHHHHHHHHhhccCCcEEEEcchhhhccchhhccccc
Confidence 21 12222 123467777778888888899999999999876421 111
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCC---CCCCC
Q 005204 600 ----QTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD---PEAGP 672 (709)
Q Consensus 600 ----~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~---~e~~~ 672 (709)
....+.+.+++++|..+++++||+||+++|.+..-+..... ...-.|...+.+.+...+-+.|... .+...
T Consensus 157 ~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~~~g~~~~~--~e~~~GG~aL~~~ss~r~~lrr~~~iK~~~~~~ 234 (321)
T TIGR02012 157 DSHVGLQARLMSQALRKLTGALSKSNTTAIFINQIREKIGVMFGN--PETTTGGRALKFYASVRLDIRRIGQVKQGEEVV 234 (321)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeccCcccCC--CccCcCccHHHHHHhHhHhhhhhhccccCCcee
Confidence 11223456788999999999999999999955432211111 1223466668999999888877542 11112
Q ss_pred CCeEEEEEEeeeCCCcceeeeEEEEEEc
Q 005204 673 IDRVQVCVRKVRNKVVGTIGEAFLSYNR 700 (709)
Q Consensus 673 ~~~~~l~v~K~R~g~~G~~g~~~l~fd~ 700 (709)
.+.+.+.|.|||-.+.+..-.+.+.|+.
T Consensus 235 g~~~~~~v~Knk~~~p~~~~~~~i~~~~ 262 (321)
T TIGR02012 235 GNRTKVKVVKNKVAPPFKEAEFDILYGE 262 (321)
T ss_pred ccEEEEEEEECCCCCCCCceEEEEEcCC
Confidence 3468999999999888776455565553
No 47
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=99.75 E-value=4.4e-17 Score=172.35 Aligned_cols=212 Identities=12% Similarity=0.096 Sum_probs=144.6
Q ss_pred CCcccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHh-----cCCeEEEEECCCC--HHHHHHHHH
Q 005204 446 GDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH-----AGWKFVLCSMENK--VREHARKLL 516 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~-----~g~~Vly~SlE~~--~~~~~~Rl~ 516 (709)
.....++||++.||.+++ +++|.++.|+|+||+|||+|++|++.+++.. .+.+|+|+++|.+ ++++.++..
T Consensus 73 ~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~ 152 (313)
T TIGR02238 73 KKVLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAE 152 (313)
T ss_pred ccCceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 445689999999999998 9999999999999999999999999887642 2579999999985 777765542
Q ss_pred HHHcCCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHH---HHHhcCCcEEEEccCcccc
Q 005204 517 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA---AVLRHGVRGLVIDPYNELD 593 (709)
Q Consensus 517 ~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~---~~~~~~~~lIVID~~~~l~ 593 (709)
. .+.+. ++ +-+++++.+ ..+.+...+.+.. ...+.++++|||||+..++
T Consensus 153 ~--~g~d~--------------~~-------~l~~i~~~~-----~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~ 204 (313)
T TIGR02238 153 R--FGVDP--------------DA-------VLDNILYAR-----AYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALF 204 (313)
T ss_pred H--cCCCh--------------HH-------hcCcEEEec-----CCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHhh
Confidence 2 22211 11 112233332 2344544443333 3445689999999999886
Q ss_pred cCCCCC---CC-HHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCC
Q 005204 594 HQRPVS---QT-ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP 668 (709)
Q Consensus 594 ~~~~~~---~~-~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~ 668 (709)
.....+ .. +.+.+.+++..|+++|+++|++|++++| ..+......-..+...-.|+..+++.+++.|.|.+.+.
T Consensus 205 r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvitNqv~~~~~~~~~~~~~~~~p~gG~~~~h~~~~Rl~l~k~~~- 283 (313)
T TIGR02238 205 RVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFVTNQVQADPGATMTFIADPKKPIGGHVLAHASTTRILLRKGRG- 283 (313)
T ss_pred hhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEEECceEecCCcccccCCCCccCcchhhhhhheeEEEEEEecCC-
Confidence 532111 11 2234778999999999999999999999 43322100000001112466789999999999997643
Q ss_pred CCCCCCeEEEEEEeeeCCCccee
Q 005204 669 EAGPIDRVQVCVRKVRNKVVGTI 691 (709)
Q Consensus 669 e~~~~~~~~l~v~K~R~g~~G~~ 691 (709)
+.+.+.|.|..+-+.+..
T Consensus 284 -----~~R~~~~~~sp~~p~~~~ 301 (313)
T TIGR02238 284 -----EERVAKLYDSPDMPEAEA 301 (313)
T ss_pred -----CeEEEEEeeCCCCCCeEE
Confidence 246788888888777663
No 48
>PRK09354 recA recombinase A; Provisional
Probab=99.74 E-value=1e-16 Score=169.85 Aligned_cols=217 Identities=18% Similarity=0.115 Sum_probs=155.8
Q ss_pred Ccccccccchhhhhhhc---cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCC
Q 005204 447 DEFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 523 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~---l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~ 523 (709)
....++||++.||.+|+ +++|.++.|+|+||+|||+|++|++.+++.. |.+|+||++|.+...- . +...|++
T Consensus 37 ~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~-G~~~~yId~E~s~~~~---~-a~~lGvd 111 (349)
T PRK09354 37 DVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHALDPV---Y-AKKLGVD 111 (349)
T ss_pred CCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEECCccchHHH---H-HHHcCCC
Confidence 34679999999999986 9999999999999999999999999999887 9999999999987752 1 2233443
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCC--CCC--
Q 005204 524 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR--PVS-- 599 (709)
Q Consensus 524 ~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~--~~~-- 599 (709)
.. ++++. ...+.++....+..++++.++++|||||+..+.... ...
T Consensus 112 ld-------------------------~lli~-----qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~g 161 (349)
T PRK09354 112 ID-------------------------NLLVS-----QPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMG 161 (349)
T ss_pred HH-------------------------HeEEe-----cCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCcc
Confidence 21 12222 123577777888888888899999999999886421 111
Q ss_pred C----CHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCC-C--CCCC
Q 005204 600 Q----TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD-P--EAGP 672 (709)
Q Consensus 600 ~----~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~-~--e~~~ 672 (709)
. .....+.+.+++|..+++++||+||+++|.+..-+.....| ..-.|..++.+.+...+-+.|... + +...
T Consensus 162 d~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQvr~~ig~~~g~p--e~~~GG~aL~~~ss~rl~lrr~~~iK~~~~~~ 239 (349)
T PRK09354 162 DSHVGLQARLMSQALRKLTGNISKSNTTVIFINQIREKIGVMFGNP--ETTTGGNALKFYASVRLDIRRIGTIKDGDEVI 239 (349)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEEeeeeccccccCCC--CcCCCchhhHhhheeeeEEecccccccCCcee
Confidence 0 12234567788899999999999999999554321111111 123466779999999999988642 1 1112
Q ss_pred CCeEEEEEEeeeCCCcceeeeEEEEEEc
Q 005204 673 IDRVQVCVRKVRNKVVGTIGEAFLSYNR 700 (709)
Q Consensus 673 ~~~~~l~v~K~R~g~~G~~g~~~l~fd~ 700 (709)
.+.+++.+.|+|-.+.+..-.+.+.|+.
T Consensus 240 G~~~r~~vvKnk~~~p~~~a~~~i~~~~ 267 (349)
T PRK09354 240 GNRTKVKVVKNKVAPPFKQAEFDIMYGE 267 (349)
T ss_pred cceEEEEEEecccCCCCCceEEEEEcCC
Confidence 3457899999999988876556666664
No 49
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=99.73 E-value=1.4e-16 Score=163.19 Aligned_cols=209 Identities=14% Similarity=0.164 Sum_probs=136.7
Q ss_pred ccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhc-----CCeEEEEECCCCHHHHHHHHHHHHcCCC
Q 005204 451 ISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHA-----GWKFVLCSMENKVREHARKLLEKHIKKP 523 (709)
Q Consensus 451 i~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~-----g~~Vly~SlE~~~~~~~~Rl~~~~~g~~ 523 (709)
++||++.||++++ +++|+++.|.|+||+|||+|++|++.+.+... +.+|+|+++|.+.. ..|+........
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~--~~rl~~~~~~~~ 78 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFR--PERLVQIAERFG 78 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcC--HHHHHHHHHHhc
Confidence 5899999999997 99999999999999999999999998876542 37999999998521 123322221110
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhc-CCcEEEEccCcccccCCCCC---
Q 005204 524 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLVIDPYNELDHQRPVS--- 599 (709)
Q Consensus 524 ~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~-~~~lIVID~~~~l~~~~~~~--- 599 (709)
... +.+.++++++++. ....+..++..+.....+. ++++|||||+..+......+
T Consensus 79 ------------~~~-------~~~~~~i~~~~~~--~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~ 137 (235)
T cd01123 79 ------------LDP-------EEVLDNIYVARAY--NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGE 137 (235)
T ss_pred ------------cCh-------HhHhcCEEEEecC--CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCcc
Confidence 111 1122345555321 1112233444555555666 89999999998775421111
Q ss_pred -CCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEE
Q 005204 600 -QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 677 (709)
Q Consensus 600 -~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~ 677 (709)
....+.+.+++..|+++|++++++|++++| ..+............--.+...+.+.++..+.+.+... ..+.
T Consensus 138 ~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~~~~~~~~~~~~~~~~p~lG~~w~~~v~~Rl~l~~~~~------~~r~ 211 (235)
T cd01123 138 LAERQQHLAKLLRTLKRLADEFNVAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGRG------EERI 211 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEeecCCcccccCCCCeeccCccHhhCCceEEEEEEECCC------CceE
Confidence 223456788999999999999999999999 54332210000000112344678888999999987752 2467
Q ss_pred EEEEeeeCCCc
Q 005204 678 VCVRKVRNKVV 688 (709)
Q Consensus 678 l~v~K~R~g~~ 688 (709)
+.+.|.+..+.
T Consensus 212 ~~i~k~~~~~~ 222 (235)
T cd01123 212 AKIVDSPHLPE 222 (235)
T ss_pred EEEeeCCCCCC
Confidence 89999877663
No 50
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=99.73 E-value=2.7e-16 Score=166.87 Aligned_cols=209 Identities=13% Similarity=0.160 Sum_probs=142.7
Q ss_pred CCcccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHh--cC---CeEEEEECCC--CHHHHHHHHH
Q 005204 446 GDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH--AG---WKFVLCSMEN--KVREHARKLL 516 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~--~g---~~Vly~SlE~--~~~~~~~Rl~ 516 (709)
....+++||++.||.+++ +++|++++|+|+||+|||+|+++++.+++.. .| .+|+||+.|. +++++....
T Consensus 73 ~~~~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia- 151 (316)
T TIGR02239 73 QEVIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIA- 151 (316)
T ss_pred cccceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHH-
Confidence 556789999999999877 9999999999999999999999999876542 23 5899999998 465543332
Q ss_pred HHHcCCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHH---HHHhcCCcEEEEccCcccc
Q 005204 517 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA---AVLRHGVRGLVIDPYNELD 593 (709)
Q Consensus 517 ~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~---~~~~~~~~lIVID~~~~l~ 593 (709)
...+. .++. +.+++++.+ ..+.+++...+.. .....++++|||||+..++
T Consensus 152 -~~~~~--------------~~~~-------~l~~i~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~ 204 (316)
T TIGR02239 152 -ERYGL--------------NPED-------VLDNVAYAR-----AYNTDHQLQLLQQAAAMMSESRFALLIVDSATALY 204 (316)
T ss_pred -HHcCC--------------ChHH-------hhccEEEEe-----cCChHHHHHHHHHHHHhhccCCccEEEEECcHHHh
Confidence 11121 1111 112233332 2334444444433 3445689999999999886
Q ss_pred cCCCCCCC----HHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCC---CCCCCccccccCchhhhcccceEEEEeeC
Q 005204 594 HQRPVSQT----ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNW---VGEPPNLYDISGSAHFINKCDNGIVIHRN 665 (709)
Q Consensus 594 ~~~~~~~~----~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~---~~~~p~l~di~GS~~i~~~AD~vl~l~r~ 665 (709)
.....+.. +...+.+++..|+++|+++|++|++++| ..+.+.. ....+ ..=.|...+++.++..|.|.+.
T Consensus 205 r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tNqv~~~~~~~~~~~~g~~--~~p~gG~~~~h~~~~ri~l~k~ 282 (316)
T TIGR02239 205 RTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVVITNQVVAQVDGAGSMFAGDP--KKPIGGNIMAHASTTRLSLRKG 282 (316)
T ss_pred hhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceEEecCCccccccCCC--CcCCchHHHHhhccEEEEEEec
Confidence 53211111 1234678999999999999999999999 4332221 00000 0114678899999999999986
Q ss_pred CCCCCCCCCeEEEEEEeeeCCCcce
Q 005204 666 RDPEAGPIDRVQVCVRKVRNKVVGT 690 (709)
Q Consensus 666 ~~~e~~~~~~~~l~v~K~R~g~~G~ 690 (709)
+. +.+.+.+.|+++.+.+.
T Consensus 283 ~~------~~R~~~v~ksp~~p~~~ 301 (316)
T TIGR02239 283 RG------EQRICKIYDSPCLPESE 301 (316)
T ss_pred CC------CeEEEEEEECCCCCCeE
Confidence 53 25789999999999877
No 51
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=99.73 E-value=2.5e-16 Score=168.00 Aligned_cols=210 Identities=13% Similarity=0.136 Sum_probs=143.4
Q ss_pred CCcccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHh-----cCCeEEEEECCC--CHHHHHHHHH
Q 005204 446 GDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH-----AGWKFVLCSMEN--KVREHARKLL 516 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~-----~g~~Vly~SlE~--~~~~~~~Rl~ 516 (709)
....+++||++.||++++ +++|++++|+|+||+|||+|+++++.+++.. .+.+|+||++|. +++++.+...
T Consensus 100 ~~~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~ 179 (342)
T PLN03186 100 QEIIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAE 179 (342)
T ss_pred cCcceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHH
Confidence 456789999999999876 9999999999999999999999999887642 134899999998 4665543321
Q ss_pred HHHcCCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHH---HHHHhcCCcEEEEccCcccc
Q 005204 517 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAK---AAVLRHGVRGLVIDPYNELD 593 (709)
Q Consensus 517 ~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~---~~~~~~~~~lIVID~~~~l~ 593 (709)
. .+. +.++ .+ +.+++.+ ..+.+.+...+. ......++++|||||+..++
T Consensus 180 ~--~~~--------------~~~~------~l-~~i~~~~-----~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alf 231 (342)
T PLN03186 180 R--FGL--------------NGAD------VL-ENVAYAR-----AYNTDHQSELLLEAASMMAETRFALMIVDSATALY 231 (342)
T ss_pred H--cCC--------------Chhh------hc-cceEEEe-----cCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHH
Confidence 1 121 1111 11 2233332 234555444443 33456789999999999886
Q ss_pred cCCCCCC-C---HHHHHHHHHHHHHHHHHHhCcEEEEEecc-CCCCCC-CCCCCccccccCchhhhcccceEEEEeeCCC
Q 005204 594 HQRPVSQ-T---ETEYVSQMLTMVKRFAQHHACHVWFVAHP-RQLHNW-VGEPPNLYDISGSAHFINKCDNGIVIHRNRD 667 (709)
Q Consensus 594 ~~~~~~~-~---~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~-rk~~~~-~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~ 667 (709)
.....+. . +...+.+++..|+++|+++|++|++++|. .+.++. .-..|.+.. .|+..+++.++..|.|.+.+.
T Consensus 232 r~~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNqv~~~~~~~~~~~~~~~~P-~gG~~~~h~~~tRl~L~k~~~ 310 (342)
T PLN03186 232 RTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVITNQVVAQVDGSAFFAGPQLKP-IGGNIMAHASTTRLALRKGRG 310 (342)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCEEEccCCccccCCCcccc-chhHHHHhhccEEEEEEecCC
Confidence 5321111 1 12346789999999999999999999993 222211 001111111 366789999999999997542
Q ss_pred CCCCCCCeEEEEEEeeeCCCcce
Q 005204 668 PEAGPIDRVQVCVRKVRNKVVGT 690 (709)
Q Consensus 668 ~e~~~~~~~~l~v~K~R~g~~G~ 690 (709)
+.+.+.+.|+++.+.+.
T Consensus 311 ------~~R~~~v~ksp~~p~~e 327 (342)
T PLN03186 311 ------ENRICKVISSPCLPEAE 327 (342)
T ss_pred ------CeEEEEEEECCCCCCeE
Confidence 35778999999999877
No 52
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.72 E-value=1.8e-16 Score=180.46 Aligned_cols=206 Identities=12% Similarity=0.089 Sum_probs=146.6
Q ss_pred CCcccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCC
Q 005204 446 GDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 523 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~ 523 (709)
..+.+++||++.||++++ +++|.+++|+|+||+|||+|++|++.+.+.+.|.+|+|+|+|++++++.+++.+. |.+
T Consensus 8 ~~~~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~--g~d 85 (509)
T PRK09302 8 PGIEKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASF--GWD 85 (509)
T ss_pred CCCccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHc--CCC
Confidence 356789999999999994 9999999999999999999999999999986699999999999999999998763 544
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecC-------CCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCC
Q 005204 524 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN-------DSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR 596 (709)
Q Consensus 524 ~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~-------~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~ 596 (709)
+..+.. ...++++.... .+..+++.+...+..++.+.+++.|||||+..+....
T Consensus 86 ~~~~~~-------------------~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~ 146 (509)
T PRK09302 86 LQKLID-------------------EGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGF 146 (509)
T ss_pred HHHHhh-------------------CCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhc
Confidence 332210 01111111000 1223567788888888888999999999988765321
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeE
Q 005204 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRV 676 (709)
Q Consensus 597 ~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~ 676 (709)
.. ...+...+.+|.+.+++.+++++++.|...... ++...+..++.||.++.|......+ ...+
T Consensus 147 ---d~-~~~~r~~l~~L~~~Lk~~g~TvLlt~~~~~~~~---------~~~~~~~~~~laDgVI~L~~~~~~~---~~~R 210 (509)
T PRK09302 147 ---SN-EAVVRRELRRLFAWLKQKGVTAVITGERGDEYG---------PLTRYGVEEFVSDCVIILRNRLEGE---KRTR 210 (509)
T ss_pred ---cC-HHHHHHHHHHHHHHHHhCCCEEEEEECCccCcC---------CccccCceEEEeeEEEEEeEEccCC---eEEE
Confidence 11 222345566677777889999999999422211 1122223467999999998655321 2357
Q ss_pred EEEEEeeeCCCc
Q 005204 677 QVCVRKVRNKVV 688 (709)
Q Consensus 677 ~l~v~K~R~g~~ 688 (709)
.+.|.|.|....
T Consensus 211 ~l~I~K~Rg~~~ 222 (509)
T PRK09302 211 TLRILKYRGTTH 222 (509)
T ss_pred EEEEEECCCCCc
Confidence 899999997653
No 53
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=99.72 E-value=4.5e-16 Score=156.55 Aligned_cols=189 Identities=17% Similarity=0.193 Sum_probs=130.0
Q ss_pred hhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC-CHHHHHHHHHHHHcCCCccccccCCCCC
Q 005204 458 LNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFFEANYGGSAE 534 (709)
Q Consensus 458 LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~-~~~~~~~Rl~~~~~g~~~~~i~~g~~~~ 534 (709)
||++++ +++|.++.|+|+||+|||+|++|++.+.+.+ |.+|+|+++|. +++++.+.....
T Consensus 1 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~e~~~~~rl~~~~~~~---------------- 63 (209)
T TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDTEGLSPERFKQIAEDR---------------- 63 (209)
T ss_pred ChhhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCCHHHHHHHHHhC----------------
Confidence 688886 9999999999999999999999999999987 99999999995 776655433210
Q ss_pred CCCHHHHHHHHHHHhcCcceEEecCCCCCCHHH---HHHHHHHHHHhcCCcEEEEccCcccccCCCCCC--CHHHHHHHH
Q 005204 535 RMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW---VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ--TETEYVSQM 609 (709)
Q Consensus 535 ~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~---i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~--~~~~~~~~i 609 (709)
.+.+.++++++.+ .+.++ ++..+...+...++++|||||+..+........ .....+.++
T Consensus 64 ----------~~~~~~~i~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~ 128 (209)
T TIGR02237 64 ----------PERALSNFIVFEV-----FDFDEQGVAIQKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQ 128 (209)
T ss_pred ----------hHHHhcCEEEEEC-----CCHHHHHHHHHHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHH
Confidence 0112234445432 23333 344445555566899999999988754211111 123355667
Q ss_pred HHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEeeeCCCc
Q 005204 610 LTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVV 688 (709)
Q Consensus 610 ~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~R~g~~ 688 (709)
+..|+++|+++|+++++++| ...... ... .-.|+..+.+.+|.++.|.+.+ +...+.+.|.+..+.
T Consensus 129 ~~~L~~~~~~~~v~vl~t~~~~~~~~~-~~~-----~~~gg~~~~~~~d~vi~l~~~~-------~~r~~~i~k~~~~~~ 195 (209)
T TIGR02237 129 LTLLLSLARKKNLAVVITNQVYTDVNN-GTL-----RPLGGHLLEHWSKVILRLEKFR-------GRRLATLEKHRSRPE 195 (209)
T ss_pred HHHHHHHHHHcCCEEEEEcccEEecCC-CCC-----cCCCcchhheeeeEEEEEEecC-------CEEEEEEEECCCCCC
Confidence 78899999999999999999 433221 011 1235567899999999998762 245567888777766
Q ss_pred cee
Q 005204 689 GTI 691 (709)
Q Consensus 689 G~~ 691 (709)
|..
T Consensus 196 ~~~ 198 (209)
T TIGR02237 196 GES 198 (209)
T ss_pred CCe
Confidence 554
No 54
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.71 E-value=2.9e-16 Score=176.97 Aligned_cols=202 Identities=15% Similarity=0.178 Sum_probs=148.8
Q ss_pred Ccccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCc
Q 005204 447 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 524 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~ 524 (709)
....++||+++||++++ +++|.+++|.|+||+|||+|++|++.+.|.+ |.+|+|+|+|++++++..|+.. .|+++
T Consensus 241 ~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~-ge~~~y~s~eEs~~~i~~~~~~--lg~~~ 317 (484)
T TIGR02655 241 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN-KERAILFAYEESRAQLLRNAYS--WGIDF 317 (484)
T ss_pred cccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeCCHHHHHHHHHH--cCCCh
Confidence 45679999999999997 9999999999999999999999999999987 9999999999999999999743 34433
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHh-cCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHH
Q 005204 525 FEANYGGSAERMTVEEFEQGKAWLS-NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 603 (709)
Q Consensus 525 ~~i~~g~~~~~l~~e~~~~~~~~l~-~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~ 603 (709)
.. +.. ..+.++.. .....++++....+...+.+.++++|||||+..+.... ..
T Consensus 318 ~~--------------------~~~~g~l~~~~~-~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~~~----~~- 371 (484)
T TIGR02655 318 EE--------------------MEQQGLLKIICA-YPESAGLEDHLQIIKSEIADFKPARIAIDSLSALARGV----SN- 371 (484)
T ss_pred HH--------------------HhhCCcEEEEEc-ccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhc----CH-
Confidence 21 111 22333322 23345678888888888888999999999988775321 12
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEee
Q 005204 604 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 683 (709)
Q Consensus 604 ~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~ 683 (709)
....+++..|.+++++.|++++++......... ... ....+.+.||+||.|...+.... -...+.|.|.
T Consensus 372 ~~~r~~~~~l~~~lk~~~it~~~t~~~~~~~~~--~~~------~~~~~s~l~D~ii~l~~~e~~g~---~~r~i~V~K~ 440 (484)
T TIGR02655 372 NAFRQFVIGVTGYAKQEEITGFFTNTSDQFMGS--HSI------TDSHISTITDTILMLQYVEIRGE---MSRAINVFKM 440 (484)
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEeecccccccC--Ccc------CCCCeeEeeeEEEEEEEEecCCE---EEEEEEEEEc
Confidence 233567788999999999999999774332110 000 11246889999999987663221 1345888999
Q ss_pred eCCCc
Q 005204 684 RNKVV 688 (709)
Q Consensus 684 R~g~~ 688 (709)
|....
T Consensus 441 R~~~~ 445 (484)
T TIGR02655 441 RGSWH 445 (484)
T ss_pred cCCCC
Confidence 98753
No 55
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.71 E-value=3e-16 Score=159.59 Aligned_cols=198 Identities=15% Similarity=0.179 Sum_probs=130.5
Q ss_pred cchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCC
Q 005204 454 GWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGG 531 (709)
Q Consensus 454 g~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~ 531 (709)
|++.||++++ +++|.+++|+|+||+|||+|++|++.+.+.+ |.+|+|+++|++++++.+++.+. +.+..
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l~~~~~~~--~~~~~------ 71 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERILGYAKSK--GWDLE------ 71 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHHHHHc--CCChH------
Confidence 6889999985 9999999999999999999999999999887 99999999999999999887543 22111
Q ss_pred CCCCCCHHHHHHHHHHHhcCcceEEecCCC-CCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHH
Q 005204 532 SAERMTVEEFEQGKAWLSNTFSLIRCENDS-LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 610 (709)
Q Consensus 532 ~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~-~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~ 610 (709)
+.+...+++++..... ...++.+...+..++.+.++++||||++..+.... .++......+.
T Consensus 72 --------------~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~~---~~~~~~r~~l~ 134 (224)
T TIGR03880 72 --------------DYIDKSLYIVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLLETLF---DDDAERRTELF 134 (224)
T ss_pred --------------HHHhCCeEEEecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhhhc---CCHHHHHHHHH
Confidence 1122233343221100 12256677777778888899999999887662211 12222222333
Q ss_pred HHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEeeeCCCc
Q 005204 611 TMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVV 688 (709)
Q Consensus 611 ~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~R~g~~ 688 (709)
.+.+..++.|+++++++|..... +.... ...+++.||.++.|...+.... ....+.|.|.|.|....
T Consensus 135 -~l~~~lk~~~~tvll~s~~~~~~------~~~~~---~~~~~~l~D~vI~L~~~~~~~~-~~~~r~l~v~K~Rg~~~ 201 (224)
T TIGR03880 135 -RFYSSLRETGVTTILTSEADKTN------VFASK---YGLIEYLADGVIILKYVRNSDL-RDVRLAVEVVKMRRSKH 201 (224)
T ss_pred -HHHHHHHhCCCEEEEEEcccCCC------CCccC---CCceEEEEeEEEEEeeeecccC-cceEEEEEEEEccCCCC
Confidence 33333457899999999933221 11111 2347899999999964432211 11234588899998643
No 56
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=99.70 E-value=3.7e-16 Score=161.32 Aligned_cols=210 Identities=17% Similarity=0.209 Sum_probs=141.6
Q ss_pred Ccccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHh-----cCCeEEEEECCCC--HHHHHHHHHH
Q 005204 447 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH-----AGWKFVLCSMENK--VREHARKLLE 517 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~-----~g~~Vly~SlE~~--~~~~~~Rl~~ 517 (709)
....++||.+.||.+|+ ++.|.+|.|+|+||+|||.|++|++.+++.. .+.+|+||+.|.+ ++++. +
T Consensus 16 ~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~----~ 91 (256)
T PF08423_consen 16 RWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ----Q 91 (256)
T ss_dssp TS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH----H
T ss_pred cCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH----H
Confidence 34679999999999997 9999999999999999999999999988753 2678999999975 44433 2
Q ss_pred HHcCCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHH---HHhcCCcEEEEccCccccc
Q 005204 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA---VLRHGVRGLVIDPYNELDH 594 (709)
Q Consensus 518 ~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~---~~~~~~~lIVID~~~~l~~ 594 (709)
..-. + .+++++ +.++++++++ .+.+++.+.+..+ ..+.++++|||||+..++.
T Consensus 92 i~~~-------~-----~~~~~~-------~l~~I~v~~~-----~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr 147 (256)
T PF08423_consen 92 IAER-------F-----GLDPEE-------ILDNIFVIRV-----FDLEELLELLEQLPKLLSESKIKLIVIDSIAALFR 147 (256)
T ss_dssp HHHH-------T-----TS-HHH-------HHHTEEEEE------SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHH
T ss_pred Hhhc-------c-----ccccch-------hhhceeeeec-----CCHHHHHHHHHHHHhhccccceEEEEecchHHHHH
Confidence 2111 1 122221 2234555533 3456555555443 4467899999999998875
Q ss_pred CCC-C-C--CCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCC
Q 005204 595 QRP-V-S--QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669 (709)
Q Consensus 595 ~~~-~-~--~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e 669 (709)
... . + ..+...+..++..|+.+|.+++++|++++| ..+......-..+...=.++..+.+.++..|.|.+.+.
T Consensus 148 ~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~~~~~~~~~~~~PalG~~w~h~~~~Rl~l~k~~~-- 225 (256)
T PF08423_consen 148 SEFSGRGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKIDSNSLFDGDRLKPALGHSWSHAVTTRLFLSKGRG-- 225 (256)
T ss_dssp HHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT----SSTTSEEETTHHHHHHHSSEEEEEEECST--
T ss_pred HHHccchhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCCcccccccccceecCcchhhhhccEEEEEEeCCC--
Confidence 321 1 1 123467888999999999999999999999 54443210000111112467789999999999998542
Q ss_pred CCCCCeEEEEEEeeeCCCcce
Q 005204 670 AGPIDRVQVCVRKVRNKVVGT 690 (709)
Q Consensus 670 ~~~~~~~~l~v~K~R~g~~G~ 690 (709)
+.+.+.|.|...-+.+.
T Consensus 226 ----~~R~~~i~ksp~~p~~~ 242 (256)
T PF08423_consen 226 ----SERVATIVKSPSLPEGS 242 (256)
T ss_dssp ----TEEEEEEEECSSSSSEE
T ss_pred ----CeEEEEEeECCCCCCce
Confidence 25788999988877654
No 57
>PTZ00035 Rad51 protein; Provisional
Probab=99.69 E-value=5.8e-16 Score=165.69 Aligned_cols=236 Identities=14% Similarity=0.175 Sum_probs=153.0
Q ss_pred ccceeeeccccccccccccccccchhhhhhhcccCCCcccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHH
Q 005204 411 ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 411 ~l~~~l~~A~~~~~~~l~~~~d~~~~ie~~~~~~~~~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
...+++..+......+..+..++++. ......++||++.||++++ +++|+++.|.|+||+|||+|+++++
T Consensus 68 ~~~~i~~~~~~~~~~~~~ta~~~~~~--------~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~ 139 (337)
T PTZ00035 68 KVEKIKEAASKLVPMGFISATEYLEA--------RKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLC 139 (337)
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHh--------hccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHH
Confidence 44455555544433333444444332 2345789999999999997 9999999999999999999999999
Q ss_pred HHHHHh-----cCCeEEEEECCCC--HHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCC
Q 005204 489 CNINEH-----AGWKFVLCSMENK--VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDS 561 (709)
Q Consensus 489 ~~~a~~-----~g~~Vly~SlE~~--~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~ 561 (709)
...... .+.+|+|+++|.+ ++++.+.. ...+. ..+ ..+ +++++.+
T Consensus 140 ~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia--~~~g~--------------~~~------~~l-~nI~~~~----- 191 (337)
T PTZ00035 140 VTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIA--ERFGL--------------DPE------DVL-DNIAYAR----- 191 (337)
T ss_pred HHhccccccCCCCceEEEEEccCCCCHHHHHHHH--HHhCC--------------ChH------hHh-hceEEEc-----
Confidence 887531 3679999999975 55543322 11111 111 111 2233332
Q ss_pred CCCHHHHHHHHH---HHHHhcCCcEEEEccCcccccCCCCCC-C---HHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCC
Q 005204 562 LPSIKWVLDLAK---AAVLRHGVRGLVIDPYNELDHQRPVSQ-T---ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQL 633 (709)
Q Consensus 562 ~~~i~~i~~~i~---~~~~~~~~~lIVID~~~~l~~~~~~~~-~---~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~ 633 (709)
..+.++..+.+. ....+.++++|||||+..++.....+. . +.+.+.+++..|+++|+++|++|++++| ..+.
T Consensus 192 ~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtNqv~~~~ 271 (337)
T PTZ00035 192 AYNHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVITNQVMADV 271 (337)
T ss_pred cCCHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEecceEEec
Confidence 234454444433 333457899999999998765421111 1 2334678999999999999999999999 4433
Q ss_pred CCC--CCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEeeeCCCcce
Q 005204 634 HNW--VGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 690 (709)
Q Consensus 634 ~~~--~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~R~g~~G~ 690 (709)
... ....+ .--.|...+.+.+++.|.+.+.+. +.+.+.|.|.++.+.|.
T Consensus 272 ~~~~~~~~~~--~~p~gG~~~~h~~~~Rl~l~k~~~------~~R~~~i~ksp~~p~~~ 322 (337)
T PTZ00035 272 DGASMFVADP--KKPIGGHIIAHASTTRLSLRKGRG------EQRICKIYDSPNLPESE 322 (337)
T ss_pred CCccccCCCC--ccCCchHHHHhheeEEEEEEecCC------CeeEEEEEECCCCCCee
Confidence 211 00111 112466788999999999997653 24678888999988877
No 58
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=99.69 E-value=1.5e-15 Score=162.35 Aligned_cols=211 Identities=14% Similarity=0.125 Sum_probs=144.6
Q ss_pred Ccccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhc-----CCeEEEEECCC--CHHHHHHHHHH
Q 005204 447 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHA-----GWKFVLCSMEN--KVREHARKLLE 517 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~-----g~~Vly~SlE~--~~~~~~~Rl~~ 517 (709)
....++||.+.||++++ +++|.++.|+|+||+|||+|++|++.+++... +.+|+|+++|. +++++.+.+..
T Consensus 80 s~~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~ 159 (317)
T PRK04301 80 NVGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEA 159 (317)
T ss_pred cCCccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHH
Confidence 34568899999999987 99999999999999999999999999987531 35899999998 47766555422
Q ss_pred HHcCCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHh-cCCcEEEEccCcccccCC
Q 005204 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR-HGVRGLVIDPYNELDHQR 596 (709)
Q Consensus 518 ~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~-~~~~lIVID~~~~l~~~~ 596 (709)
.+. +.++ .+ ++++++++. .......+...+..++.. .++++|||||+..+....
T Consensus 160 --~g~--------------~~~~------~l-~~i~~~~~~--~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~ 214 (317)
T PRK04301 160 --LGL--------------DPDE------VL-DNIHVARAY--NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAE 214 (317)
T ss_pred --cCC--------------ChHh------hh-ccEEEEeCC--CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhh
Confidence 121 1111 12 234444321 111122344555555555 789999999999876532
Q ss_pred C-CCCC---HHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCC
Q 005204 597 P-VSQT---ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAG 671 (709)
Q Consensus 597 ~-~~~~---~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~ 671 (709)
. ...+ +.+.+.+++..|+++|+++|++||+++| ..+.....+ ......|...+.+.++..|.|.+...
T Consensus 215 ~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnqv~~~~~~~~~---~~~~~~~G~~~~~~~~~rl~l~k~~~---- 287 (317)
T PRK04301 215 YVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFG---DPTQPIGGHILGHTATFRIYLRKSKG---- 287 (317)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeceEEeccccccC---ccccCCcchHhHhheeEEEEEEecCC----
Confidence 1 1111 1234667888999999999999999999 443322111 11123455678999999999998542
Q ss_pred CCCeEEEEEEeeeCCCccee
Q 005204 672 PIDRVQVCVRKVRNKVVGTI 691 (709)
Q Consensus 672 ~~~~~~l~v~K~R~g~~G~~ 691 (709)
+.+.+.+.|++.++.|..
T Consensus 288 --~~R~~~v~k~~~~~~~~~ 305 (317)
T PRK04301 288 --NKRIARLVDSPHLPEGEA 305 (317)
T ss_pred --CceEEEEEeCCCCCCceE
Confidence 246899999999988764
No 59
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=99.68 E-value=2.5e-15 Score=160.45 Aligned_cols=211 Identities=17% Similarity=0.149 Sum_probs=142.9
Q ss_pred Ccccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHh-----cCCeEEEEECCC--CHHHHHHHHHH
Q 005204 447 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH-----AGWKFVLCSMEN--KVREHARKLLE 517 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~-----~g~~Vly~SlE~--~~~~~~~Rl~~ 517 (709)
....++|+.+.+|.+++ ++.|.+++|+|+||+|||+|++|++.+++.. .+.+|+|+++|. +++++.+.+..
T Consensus 73 s~~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~ 152 (310)
T TIGR02236 73 TIGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEA 152 (310)
T ss_pred cCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHH
Confidence 34568899999999998 9999999999999999999999999998741 134999999998 56665443321
Q ss_pred HHcCCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhc--CCcEEEEccCcccccC
Q 005204 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQ 595 (709)
Q Consensus 518 ~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~--~~~lIVID~~~~l~~~ 595 (709)
.+ ++.++ +.+++++++.. ... ..-.+++.+..++.+. .+++|||||+..+...
T Consensus 153 --~g--------------l~~~~-------~~~~i~i~~~~-~~~-~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~ 207 (310)
T TIGR02236 153 --RG--------------LDPDE-------VLKNIYVARAY-NSN-HQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRA 207 (310)
T ss_pred --cC--------------CCHHH-------HhhceEEEecC-CHH-HHHHHHHHHHHHHHhcCCCceEEEEecchHhhhH
Confidence 12 22211 12234444321 100 0112334444445444 4899999999987553
Q ss_pred CCCCCC----HHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCC
Q 005204 596 RPVSQT----ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA 670 (709)
Q Consensus 596 ~~~~~~----~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~ 670 (709)
...+.. +.+.+.+++..|+.+|+++|++|++++| ..+.....+ ......|...+++.+++.|.|.+...
T Consensus 208 e~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnqv~~~~~~~~~---~~~~~~~G~~~~h~~~~rl~l~~~~~--- 281 (310)
T TIGR02236 208 EYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFG---DPTRPIGGHILGHAATFRVYLRKGKG--- 281 (310)
T ss_pred hhcCchhHHHHHHHHHHHHHHHHHHHHHhCcEEEEeceeeecCccccC---ccccCCcchhhhhheeEEEEEEecCC---
Confidence 211111 2234667888999999999999999999 544321111 11134577889999999999998432
Q ss_pred CCCCeEEEEEEeeeCCCccee
Q 005204 671 GPIDRVQVCVRKVRNKVVGTI 691 (709)
Q Consensus 671 ~~~~~~~l~v~K~R~g~~G~~ 691 (709)
+.+.+.+.|++.++.|..
T Consensus 282 ---~~R~~~~~k~~~~~~~~~ 299 (310)
T TIGR02236 282 ---DKRIARLVDSPHLPEGEA 299 (310)
T ss_pred ---CeEEEEEEECCCCCCeeE
Confidence 257899999999998875
No 60
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.67 E-value=2.8e-15 Score=154.03 Aligned_cols=183 Identities=16% Similarity=0.131 Sum_probs=125.2
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHh-----------cCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCC
Q 005204 467 GELTIVTGVPNSGKSEWIDALICNINEH-----------AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 535 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~-----------~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~ 535 (709)
|.+.+|+|+||+|||+|++|+|+++|.. .+.+|+|+++|++..++.+|+.+.........+.. +
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~-----r 75 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGD-----R 75 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCccc-----c
Confidence 6799999999999999999999998852 26789999999999999999988766553221110 0
Q ss_pred CCHHHHHHHHHHHhcCcceEEecCCC-CCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHH
Q 005204 536 MTVEEFEQGKAWLSNTFSLIRCENDS-LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 614 (709)
Q Consensus 536 l~~e~~~~~~~~l~~~~~~i~~~~~~-~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk 614 (709)
+- ........+.+.. .. ....+.+...++. +...++++|||||+..+. . ...++...+..++..|+
T Consensus 76 l~-------~~~g~~~~l~~~~--~~~~~~~~~~~~l~~~-~~~~~~~lvviDpl~~~~-~--~~~~d~~~~~~~~~~L~ 142 (239)
T cd01125 76 LF-------IDSGRIQPISIAR--EGRIIVVPEFERIIEQ-LLIRRIDLVVIDPLVSFH-G--VSENDNGAMDAVIKALR 142 (239)
T ss_pred eE-------EeccCCCceeccc--CCcccccHHHHHHHHH-HHhcCCCEEEECChHHhC-C--CCcCCHHHHHHHHHHHH
Confidence 00 0000000111100 00 1122333333333 335789999999887762 2 12344556778999999
Q ss_pred HHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCC
Q 005204 615 RFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 669 (709)
Q Consensus 615 ~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e 669 (709)
++++++|++|++++|..|.... ...+.++.+||+++.+.++.++.+.+..+.+
T Consensus 143 ~~a~~~g~avl~v~H~~K~~~~--~~~~~~~~rGssal~~~~r~~~~l~~~~~~~ 195 (239)
T cd01125 143 RIAAQTGAAILLVHHVRKGSAK--DGDTQEAARGASALVDGARWVRALTRMTSEE 195 (239)
T ss_pred HHHHHhCCEEEEEeccCccccc--CcccccccCcHHHHhcccceEEEEeeCCHHH
Confidence 9999999999999995554332 1157788999999999999999999877543
No 61
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.67 E-value=5.6e-15 Score=151.26 Aligned_cols=200 Identities=15% Similarity=0.127 Sum_probs=138.0
Q ss_pred Ccccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCc
Q 005204 447 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 524 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~ 524 (709)
....++||++.||++++ +++|.+++|+|+||+|||+|+.|++...+.+ |.+|+|+++|++++++.+++.+ .|.+.
T Consensus 3 ~~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~~~~~~~~~~~~--~g~~~ 79 (234)
T PRK06067 3 KKEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTENTSKSYLKQMES--VKIDI 79 (234)
T ss_pred CceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCCCHHHHHHHHHH--CCCCh
Confidence 34579999999999986 9999999999999999999999999998886 9999999999999999888754 23322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHhcCcceEEec----CCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCC
Q 005204 525 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE----NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600 (709)
Q Consensus 525 ~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~----~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~ 600 (709)
.+.. ......++... .......+.+...+...+.+.++++||||++..+... .
T Consensus 80 ~~~~-------------------~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~----~ 136 (234)
T PRK06067 80 SDFF-------------------LWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY----A 136 (234)
T ss_pred hHHH-------------------hCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc----C
Confidence 2110 00111111100 0112345677777777777789999999998866431 1
Q ss_pred CHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEE
Q 005204 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCV 680 (709)
Q Consensus 601 ~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v 680 (709)
+ .+.+..++..|+.+++ .++++++++|......+ ....+.+.+|.++.|...+... .-.+.|.|
T Consensus 137 ~-~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~-----------~~~~~~~l~DgvI~L~~~~~~~---~~~r~l~i 200 (234)
T PRK06067 137 E-EDDILNFLTEAKNLVD-LGKTILITLHPYAFSEE-----------LLSRIRSICDVYLKLRAEQIGG---RYVKVLEV 200 (234)
T ss_pred C-HHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHH-----------HHHHHHhheEEEEEEEeeccCC---EEeEEEEE
Confidence 1 2335667677766665 58889988884222110 0134678899999898654321 22467999
Q ss_pred EeeeCCCc
Q 005204 681 RKVRNKVV 688 (709)
Q Consensus 681 ~K~R~g~~ 688 (709)
.|.|....
T Consensus 201 ~K~Rg~~~ 208 (234)
T PRK06067 201 VKLRGARK 208 (234)
T ss_pred EhhcCCCC
Confidence 99997654
No 62
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.66 E-value=4.6e-15 Score=168.90 Aligned_cols=202 Identities=14% Similarity=0.158 Sum_probs=145.8
Q ss_pred Ccccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCc
Q 005204 447 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 524 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~ 524 (709)
....++||++.||++++ +++|.+++|.|+||+|||+|+.|++.+.+.+ |.+|+|+++|++++++.+++.+ .|.+.
T Consensus 251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~-g~~~~yis~e~~~~~i~~~~~~--~g~~~ 327 (509)
T PRK09302 251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRR-GERCLLFAFEESRAQLIRNARS--WGIDL 327 (509)
T ss_pred ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCHHHHHHHHHH--cCCCh
Confidence 45679999999999996 9999999999999999999999999999887 9999999999999999887743 34433
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHH
Q 005204 525 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 604 (709)
Q Consensus 525 ~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~ 604 (709)
.... ..+.+.++. ......+++++...+...+.+.++++|||||+..+.... . ..
T Consensus 328 ~~~~-------------------~~g~l~i~~-~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~----~-~~ 382 (509)
T PRK09302 328 EKME-------------------EKGLLKIIC-ARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGG----S-LN 382 (509)
T ss_pred HHHh-------------------hcCCceeec-CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC----C-HH
Confidence 2110 011122221 112234567777788887888899999999998875421 1 23
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEeee
Q 005204 605 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 684 (709)
Q Consensus 605 ~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~R 684 (709)
.+.+.+..|..+++++|++++++.|...... ..... ...+.+.||.+|.|...+... .-.+.+.|.|.|
T Consensus 383 ~~~~~l~~l~~~~k~~~~t~l~t~~~~~~~g--~~~~~------~~~~~~l~D~vI~L~~~~~~~---~~~R~l~I~K~R 451 (509)
T PRK09302 383 EFRQFVIRLTDYLKSEEITGLFTNLTPDFMG--SHSIT------ESHISSLTDTWILLQYVEING---EMNRALYVLKMR 451 (509)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccccccC--CCCCC------cCceEEeeeEEEEEEEeecCC---eeEEEEEEEEcC
Confidence 4567788899999999999999998432211 00111 123678999999999765321 114568999999
Q ss_pred CCC
Q 005204 685 NKV 687 (709)
Q Consensus 685 ~g~ 687 (709)
...
T Consensus 452 g~~ 454 (509)
T PRK09302 452 GSW 454 (509)
T ss_pred CCC
Confidence 754
No 63
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.61 E-value=3.8e-14 Score=159.83 Aligned_cols=201 Identities=12% Similarity=0.079 Sum_probs=134.3
Q ss_pred cccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCcccc
Q 005204 450 GISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 527 (709)
Q Consensus 450 gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i 527 (709)
.++||++.||++++ +++|.+++|.|+||+|||+|++|++.+.+.+.|.+++|+++|++++++.+++.+. |.++...
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~--G~~~~~~ 79 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSF--GWDLQKL 79 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHc--CCCHHHH
Confidence 47999999999986 9999999999999999999999999998876589999999999999998887553 4433321
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhcCcceEEecC-------CCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCC
Q 005204 528 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN-------DSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600 (709)
Q Consensus 528 ~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~-------~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~ 600 (709)
.. .+.+.++.... .....++.+...+...+...+.+.|+||++..+.....
T Consensus 80 ~~-------------------~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~--- 137 (484)
T TIGR02655 80 VD-------------------EGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYD--- 137 (484)
T ss_pred hh-------------------cCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcC---
Confidence 10 01112211000 12335666777776777778899999998877653221
Q ss_pred CHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEE
Q 005204 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCV 680 (709)
Q Consensus 601 ~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v 680 (709)
.......++..-+ ...++.++++++++|...... . ...-+..++.||.||.|....... .-.+.+.|
T Consensus 138 ~~~~~r~~l~~Li-~~L~~~g~TvLLtsh~~~~~~------~---~~~~~~~e~laDgVI~L~~~~~~~---~~~R~l~I 204 (484)
T TIGR02655 138 AVSVVRREIFRLV-ARLKQIGVTTVMTTERIEEYG------P---IARYGVEEFVSDNVVILRNVLEGE---RRRRTLEI 204 (484)
T ss_pred chHHHHHHHHHHH-HHHHHCCCEEEEEecCccccc------c---cccCCceeEeeeeEEEEEEEecCC---EEEEEEEE
Confidence 1111222333333 333567999999999432211 0 111112378999999998654321 12467999
Q ss_pred EeeeCCC
Q 005204 681 RKVRNKV 687 (709)
Q Consensus 681 ~K~R~g~ 687 (709)
.|.|...
T Consensus 205 ~K~Rgs~ 211 (484)
T TIGR02655 205 LKLRGTS 211 (484)
T ss_pred EECCCCC
Confidence 9998653
No 64
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.59 E-value=7.4e-14 Score=137.63 Aligned_cols=180 Identities=12% Similarity=0.096 Sum_probs=116.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHHHHH
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l 548 (709)
.++|+|+||+|||+|++|++...+.+ |.+|+|+|+|++++++.+++.+. |.+...+..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~~~~~~~~~~~~--g~~~~~l~~------------------- 58 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEESPEELIENAESL--GWDLERLED------------------- 58 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCCHHHHHHHHHHc--CCChHHHHh-------------------
Confidence 37899999999999999999999987 99999999999999999887554 443322110
Q ss_pred hcCcceEEecC----CC-CCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcE
Q 005204 549 SNTFSLIRCEN----DS-LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623 (709)
Q Consensus 549 ~~~~~~i~~~~----~~-~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~ 623 (709)
.+...++.... .+ ....++++..+...+...++++||||++..+... +.......+...++.+. +.|++
T Consensus 59 ~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~-----~~~~~~~~i~~l~~~l~-~~g~t 132 (187)
T cd01124 59 EGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLM-----EQSTARLEIRRLLFALK-RFGVT 132 (187)
T ss_pred cCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhc-----ChHHHHHHHHHHHHHHH-HCCCE
Confidence 00111111000 00 0011245566666677789999999988776532 12222233444444444 45999
Q ss_pred EEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEeeeCCCc
Q 005204 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVV 688 (709)
Q Consensus 624 Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~R~g~~ 688 (709)
|++++|...... ...++..+.+.||.++.|++..... ...+.+.|.|.|..+.
T Consensus 133 vi~v~~~~~~~~---------~~~~~~~~~~~aD~ii~l~~~~~~~---~~~r~l~i~K~R~~~~ 185 (187)
T cd01124 133 TLLTSEQSGLEG---------TGFGGGDVEYLVDGVIRLRLDEEGG---RLRRSLSVVKMRGGPH 185 (187)
T ss_pred EEEEeccccCCC---------cccCcCceeEeeeEEEEEEEEccCC---EEEEEEEEEEccCCCC
Confidence 999999433211 1235567899999999999775321 1245699999997643
No 65
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=99.59 E-value=7e-14 Score=161.31 Aligned_cols=217 Identities=17% Similarity=0.108 Sum_probs=150.5
Q ss_pred Ccccccccchhhhhhhc---cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCC
Q 005204 447 DEFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 523 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~---l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~ 523 (709)
....++||++.||.+|+ +++|.+++|+|+||+|||+|++|++.+++.+ |.+|+|+++|.+...- + +...|++
T Consensus 37 ~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~-G~~v~yId~E~t~~~~--~--A~~lGvD 111 (790)
T PRK09519 37 PISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGVAAFIDAEHALDPD--Y--AKKLGVD 111 (790)
T ss_pred CCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEECCccchhHH--H--HHHcCCC
Confidence 45689999999999984 9999999999999999999999999998876 9999999999987621 2 2223443
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCccccc-CC-CCC-C
Q 005204 524 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH-QR-PVS-Q 600 (709)
Q Consensus 524 ~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~-~~-~~~-~ 600 (709)
... +++. ...+.+.+...+..++.+.++++|||||++.+.. .. ... .
T Consensus 112 l~~-------------------------llv~-----~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g 161 (790)
T PRK09519 112 TDS-------------------------LLVS-----QPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMG 161 (790)
T ss_pred hhH-------------------------eEEe-----cCCCHHHHHHHHHHHhhcCCCeEEEEcchhhhcchhhccCCCC
Confidence 221 1222 2234566777777777788899999999998874 11 111 1
Q ss_pred C----H-HHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC---CCCCCC
Q 005204 601 T----E-TEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR---DPEAGP 672 (709)
Q Consensus 601 ~----~-~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~---~~e~~~ 672 (709)
+ . .+.+.+++.+|..+++++|++||++.|.+..-+.... +...-.|...+.+.+.+-|.|.+.+ +.....
T Consensus 162 ~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQv~~~~g~~fg--~p~~~~GG~~l~h~ss~Ri~lrk~~~ik~~~~~~ 239 (790)
T PRK09519 162 DSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGVMFG--SPETTTGGKALKFYASVRMDVRRVETLKDGTNAV 239 (790)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceecCCCcCC--CCCcCCCCcccceeccEEEEeeeccccccCcccc
Confidence 1 1 2234678888999999999999999995443221111 1122347778999999999998743 111112
Q ss_pred CCeEEEEEEeeeCCCcceeeeEEEEEEccccEE
Q 005204 673 IDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 705 (709)
Q Consensus 673 ~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf 705 (709)
.+.+.+.|.|++.=+.++ ..|+..||+-
T Consensus 240 G~~~~~kv~ks~cLpe~e-----~v~~i~tG~~ 267 (790)
T PRK09519 240 GNRTRVKVVKNKCLAEGT-----RIFDPVTGTT 267 (790)
T ss_pred ceEEEEEEEECCCCCCce-----EEEEecCCCE
Confidence 346778888888754443 4466666643
No 66
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=99.59 E-value=1.4e-13 Score=141.81 Aligned_cols=216 Identities=19% Similarity=0.145 Sum_probs=151.3
Q ss_pred Ccccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC--HHHHHHHHHHHHcCC
Q 005204 447 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK--VREHARKLLEKHIKK 522 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~--~~~~~~Rl~~~~~g~ 522 (709)
....++||...||.++| ++.|.++-|+|++|+|||++|+|++.++... |..++|+..|.+ ++++
T Consensus 38 ~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~-g~~a~fIDtE~~l~p~r~----------- 105 (279)
T COG0468 38 DIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKP-GGKAAFIDTEHALDPERA----------- 105 (279)
T ss_pred ccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcC-CCeEEEEeCCCCCCHHHH-----------
Confidence 36789999999999998 9999999999999999999999999999987 889999999964 3322
Q ss_pred CccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcC--CcEEEEccCcccccCCCCC-
Q 005204 523 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG--VRGLVIDPYNELDHQRPVS- 599 (709)
Q Consensus 523 ~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~--~~lIVID~~~~l~~~~~~~- 599 (709)
.++.....+.+++.. ..+.++-...+..+..... +++|||||+..+.......
T Consensus 106 -------------------~~l~~~~~d~l~v~~-----~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~d 161 (279)
T COG0468 106 -------------------KQLGVDLLDNLLVSQ-----PDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIED 161 (279)
T ss_pred -------------------HHHHHhhhcceeEec-----CCCHHHHHHHHHHHHHhccCCCCEEEEecCcccchhhhcCc
Confidence 111111012334432 2344544455555554444 9999999999887643211
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeE
Q 005204 600 ---QTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRV 676 (709)
Q Consensus 600 ---~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~ 676 (709)
....+.+.+.+..|..+|.++|++|++++|-+..-+.... +...=-|...+...+.+.+.+.+...--....+.+
T Consensus 162 ~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~~f~--~~~~~~GG~~L~~~as~rl~l~k~~~~~~~~g~~r 239 (279)
T COG0468 162 GHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGVMFG--DPETTTGGNALKFYASVRLDLRRIESLKEDVGNKR 239 (279)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeeecCcccC--CcccCCCchHHHhhhheEEEEeeccccccccCCeE
Confidence 1234567889999999999999999999994433221111 22233477889999999999988741000023467
Q ss_pred EEEEEeeeCCCcceeeeEEEEEEc
Q 005204 677 QVCVRKVRNKVVGTIGEAFLSYNR 700 (709)
Q Consensus 677 ~l~v~K~R~g~~G~~g~~~l~fd~ 700 (709)
.+.+.|+|.-+.+..-.+.+.|+.
T Consensus 240 ~~~vvk~~~~p~~~~a~f~I~~~~ 263 (279)
T COG0468 240 RVKVVKNKVAPPFKEAEFDITYGG 263 (279)
T ss_pred EEEEEeCCCCCCCceeEEEeecCc
Confidence 899999999988865445555553
No 67
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.58 E-value=2.3e-13 Score=138.55 Aligned_cols=213 Identities=13% Similarity=0.097 Sum_probs=136.0
Q ss_pred cccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCcccc
Q 005204 450 GISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 527 (709)
Q Consensus 450 gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i 527 (709)
.+.++++.||++++ +++|++++|.|+||+|||+|++|++...+.+ |.+++|+++|+++.++.+.+.+ .|.+....
T Consensus 5 ~~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g~~~~yi~~e~~~~~~~~~~~~--~g~~~~~~ 81 (230)
T PRK08533 5 KIELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQN-GYSVSYVSTQLTTTEFIKQMMS--LGYDINKK 81 (230)
T ss_pred EEEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHH--hCCchHHH
Confidence 46778999999997 9999999999999999999999999998877 9999999999999988877632 23322110
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhcCcceEEecCC--CCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHH
Q 005204 528 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCEND--SLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 605 (709)
Q Consensus 528 ~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~--~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~ 605 (709)
. ..+.+.++...+. +....+.....+.......+++++|||++....... .+...
T Consensus 82 -----------------~--~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~----~d~~~ 138 (230)
T PRK08533 82 -----------------L--ISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISND----ASEVA 138 (230)
T ss_pred -----------------h--hcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCC----cchHH
Confidence 0 0012222221100 111123333334344445689999999988765321 12223
Q ss_pred HHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEeeeC
Q 005204 606 VSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRN 685 (709)
Q Consensus 606 ~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~R~ 685 (709)
..++++.|+.+++. |++++++++...... .....+++.||.+|.|...+.... -.+.+.|.|-|.
T Consensus 139 ~~~l~~~l~~l~~~-g~tvi~t~~~~~~~~-----------~~~~~~~~~~DgvI~L~~~~~~~~---~~R~i~V~KmR~ 203 (230)
T PRK08533 139 VNDLMAFFKRISSL-NKVIILTANPKELDE-----------SVLTILRTAATMLIRLEVKVFGGD---LKNSAKIVKYNM 203 (230)
T ss_pred HHHHHHHHHHHHhC-CCEEEEEeccccccc-----------ccceeEEEeeeEEEEEEEeecCCE---EEEEEEEEEecC
Confidence 45566667767654 777777666322211 011257899999999997664221 146688999997
Q ss_pred CCcceeeeEEEEEEcccc
Q 005204 686 KVVGTIGEAFLSYNRVTG 703 (709)
Q Consensus 686 g~~G~~g~~~l~fd~~t~ 703 (709)
.+....+.+++.+.+-.|
T Consensus 204 ~~~~~~~~~~f~i~~~~g 221 (230)
T PRK08533 204 AKGSFQKSIPFRVEPKIG 221 (230)
T ss_pred CccccCCEEEEEEcCCcc
Confidence 433322356676666554
No 68
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=99.57 E-value=1.8e-13 Score=143.73 Aligned_cols=216 Identities=15% Similarity=0.119 Sum_probs=146.9
Q ss_pred Ccccccccchhhhhhhc---cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCC
Q 005204 447 DEFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 523 (709)
Q Consensus 447 ~~~gi~tg~~~LD~ll~---l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~ 523 (709)
....++||++.||..++ +++|.++.|+|++++|||+|+++++.++... |..++|+..|..... .+ +...|++
T Consensus 30 ~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~-g~~~a~ID~e~~ld~---~~-a~~lGvd 104 (322)
T PF00154_consen 30 NIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ-GGICAFIDAEHALDP---EY-AESLGVD 104 (322)
T ss_dssp SS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-T-EEEEEESSS---H---HH-HHHTT--
T ss_pred ccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc-cceeEEecCcccchh---hH-HHhcCcc
Confidence 44679999999999985 9999999999999999999999999988776 999999999976432 22 2233654
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCC--C----
Q 005204 524 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR--P---- 597 (709)
Q Consensus 524 ~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~--~---- 597 (709)
.. +++++.+ .+.++.+..++.+++...+++|||||+..+.... .
T Consensus 105 l~-------------------------rllv~~P-----~~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e~~~~ 154 (322)
T PF00154_consen 105 LD-------------------------RLLVVQP-----DTGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELEGEIG 154 (322)
T ss_dssp GG-------------------------GEEEEE------SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHTTSTS
T ss_pred cc-------------------------ceEEecC-----CcHHHHHHHHHHHhhcccccEEEEecCcccCCHHHHhhccc
Confidence 43 2344422 2456777788888888889999999998886421 0
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC---CCCCCC
Q 005204 598 --VSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR---DPEAGP 672 (709)
Q Consensus 598 --~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~---~~e~~~ 672 (709)
......+.+++++++|..+..+.|+++|+++|.|..-+.....| .-..|..++.+.|++.|-+.+.+ +.+..-
T Consensus 155 ~~~~g~~Ar~ms~~lr~lt~~l~~~~~~~i~INQ~R~~ig~~~g~~--~~t~GG~alkfyas~rl~i~k~~~ik~~~~~i 232 (322)
T PF00154_consen 155 DQQVGLQARLMSQALRKLTPLLSKSNTTLIFINQVRDKIGVMFGNP--ETTPGGRALKFYASVRLEIRKKEQIKEGDEVI 232 (322)
T ss_dssp STSSSHHHHHHHHHHHHHHHHHHTTT-EEEEEEEESSSSSSSSSSS--SCCTSHHHHHHHCSEEEEEEEEEEEEETTCEC
T ss_pred cccCcchHHHHHHHHHHHHHHHHhhceEEEEeehHHHHHhhccCCC--cCCCCCchhhhhhhhHHhhhcccccccCCccc
Confidence 11234567889999999999999999999999766543211222 33469999999999999998754 111112
Q ss_pred CCeEEEEEEeeeCCCcceeeeEEEEEE
Q 005204 673 IDRVQVCVRKVRNKVVGTIGEAFLSYN 699 (709)
Q Consensus 673 ~~~~~l~v~K~R~g~~G~~g~~~l~fd 699 (709)
.....+.|.|||-.+.-..-.+.+.|+
T Consensus 233 G~~~~vkv~KnKva~P~k~a~~~i~y~ 259 (322)
T PF00154_consen 233 GNKIKVKVVKNKVAPPFKKAEFDIYYG 259 (322)
T ss_dssp EEEEEEEEEEESSS-TTEEEEEEEETT
T ss_pred ccEEEEEEEEcccCCCcceeEEEEecC
Confidence 336789999999976555444555554
No 69
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.56 E-value=2.2e-13 Score=141.68 Aligned_cols=207 Identities=17% Similarity=0.182 Sum_probs=142.2
Q ss_pred ccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccc
Q 005204 449 FGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 526 (709)
Q Consensus 449 ~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~ 526 (709)
..++||++.||++++ +++|.+++|.|+||+|||+|+.|++.+.+.. |.+|+|+|+|++++++.+.+.+ .|.++..
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l~~~~~~--~g~d~~~ 79 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEELLENARS--FGWDLEV 79 (260)
T ss_pred ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCCHHHHHHHHHH--cCCCHHH
Confidence 578999999999998 9999999999999999999999999999998 9999999999999999877755 3443321
Q ss_pred cc-cCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHH
Q 005204 527 AN-YGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 605 (709)
Q Consensus 527 i~-~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~ 605 (709)
.. .+ .+...+ +........... ......++.+...+..++...+...+||||+..+... .+....
T Consensus 80 ~~~~g----~l~i~d---~~~~~~~~~~~~---~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~----~~~~~~ 145 (260)
T COG0467 80 YIEKG----KLAILD---AFLSEKGLVSIV---VGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLY----LNDPAL 145 (260)
T ss_pred HhhcC----CEEEEE---cccccccccccc---ccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhhh----cCchHH
Confidence 11 00 000000 000000000000 0113456778889999999999999999998854432 122222
Q ss_pred HHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeE-EEEEEeee
Q 005204 606 VSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRV-QVCVRKVR 684 (709)
Q Consensus 606 ~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~-~l~v~K~R 684 (709)
...++..+..+.++.+++.+++.+-....... . +-.++.+|.++.|........ ... .+.+.|-|
T Consensus 146 ~r~~~~~l~~~~~~~~~t~~~~~~~~~~~~~~----~-------~~~~~~vdgvI~l~~~~~~~~---~~r~~~~i~k~r 211 (260)
T COG0467 146 VRRILLLLKRFLKKLGVTSLLTTEAPVEERGE----S-------GVEEYIVDGVIRLDLKEIEGG---GDRRYLRILKMR 211 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccCCCc----c-------ceEEEEEEEEEEEeeecccCc---eEEEEEEEEecc
Confidence 36788889999999999999998832222110 0 234568999999987664322 233 77888877
Q ss_pred CC
Q 005204 685 NK 686 (709)
Q Consensus 685 ~g 686 (709)
.-
T Consensus 212 ~~ 213 (260)
T COG0467 212 GT 213 (260)
T ss_pred cc
Confidence 64
No 70
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=99.54 E-value=5.1e-14 Score=179.14 Aligned_cols=223 Identities=17% Similarity=0.236 Sum_probs=141.8
Q ss_pred CceEEEEeeCC-CeeEEEEeccccccccccccccccccccch----------h-----h-------hccc----------
Q 005204 155 LSLSLFLDEDG-FSAVWMCFRAKCGWKGSTSALVDNNRSQSS----------L-----K-------KFSK---------- 201 (709)
Q Consensus 155 ~s~sv~i~~~~-~~~~~~Cf~~~Cg~~G~~~~~~~~~~~~~~----------~-----~-------~~~~---------- 201 (709)
.|+.|.+. | .+|.|+||+ ||.+|++++|.|....... + + ....
T Consensus 1592 ~sl~v~l~--g~~~G~w~c~~--~G~~Gd~~dli~~~~g~~F~EA~~~~~~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~ 1667 (1960)
T TIGR02760 1592 GGLKVSLT--GKYRGLWHDFS--TGEKGTLIQLIEAKKGLSFKEALNQAASLLGIPQHYQLSINIKAPQLSNTEPQKLNQ 1667 (1960)
T ss_pred CceEEEee--cccCCeEeccC--CCCCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCccccccccccccccccchhhhh
Confidence 57777776 3 389999998 9999999998876421000 0 0 0000
Q ss_pred -hhhhhhhccccccCCcC-cHHHHHHH-HhCCCCHHHHHHccc--ccc-CC----CCeeEEEEeEe-cCCEEEEEEeecC
Q 005204 202 -MKTIREITEDSLELEPL-GNELRAYF-AERLISAETLRRNRV--MQK-RH----GHEVVIAFPYW-RNGKLVNCKYRDF 270 (709)
Q Consensus 202 -~~~~~~~~~~~~~~~~l-~~~~~~YL-~~RGI~~~~~~~~~~--~~~-~~----g~~~~i~fP~~-~~G~lv~~~~R~~ 270 (709)
.+..+++|.... |+ +..+.+|| ..|||+.. ..+.+ .+. |+ .+.++++||+. .+|++++++.+.+
T Consensus 1668 ~~~~A~rl~~~a~---pi~gt~A~~YL~~~RGI~~~--~~~~LrfhP~~y~~~~~~~~Paliapv~D~~G~i~gv~rt~L 1742 (1960)
T TIGR02760 1668 LEKRAKSLFQGSQ---ELKGTLAEKYLKQHRGLASI--DNDDIRFHPTVYSSDKKNKHPALIAAARNEKGEITGIQITYL 1742 (1960)
T ss_pred HHHHHHHHHHhcC---CCCCHHHHHHHHhcCCCCCC--CccceEECcccccCCCCCcCCeEEEEEECCCCCEEEEEEEEc
Confidence 011234444332 44 56789999 99999763 33333 221 11 25689999988 7999999999997
Q ss_pred C------CcccccC-----CCCCccccccccCCCCeEEEEcChhhHHHHHHhCC--ceEEEcCCCCCCCCCCCCCCchhh
Q 005204 271 N------KKFWQEK-----DTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGF--LNCVSVPDGAPSSVSKKNVPSEEQ 337 (709)
Q Consensus 271 ~------kk~~~~~-----~~~~~lyg~~~i~~~~~viI~EG~~DaLsl~q~g~--~~~val~~G~~~~~~~~~L~~~~~ 337 (709)
+ +++..++ .+...++.+......+.++|+||++|+||+++++. .++|++ .|+++... +.
T Consensus 1743 ~p~~g~~~k~l~~~kr~~G~k~g~~v~l~~~~~~~~liiaEGiEtaLS~~~a~~~~~~vvA~-lg~~~l~~---i~---- 1814 (1960)
T TIGR02760 1743 DKDDANKDKDMDNNKRVKGSISGQFVVINKGMQGDRSYIAEGIETGLSIALANPKATVVIAV-GGKNNLSP---II---- 1814 (1960)
T ss_pred cCCCCCCCccCCCcccccccccCcEEEecCCCCCCeEEEEcCHHHHHHHHHhCCCCccEEEE-CCcccccc---cc----
Confidence 5 2333322 22333444443344567999999999999999974 457774 35543211 10
Q ss_pred hhhHHHHHhHhhhhcCcCEEEEEecCCh--h-hHHHHHHHHHHhCC--cceEEEEcCCCCCCCCCCCHHHHHHhcCCCcc
Q 005204 338 DTKYQYLWNCKMYLKQASRIILATDGDP--P-GQALAEELARRVGR--ERCWRVRWPKKNDVDHFKDANEVLMYLGPGAL 412 (709)
Q Consensus 338 ~~~~~~l~~~~~~L~~~~~Ivi~~DnD~--a-G~~aa~~~a~~l~~--~~~~iv~~P~~~~~~~~kD~ND~l~~~g~e~l 412 (709)
.+ ...++|+||+|||. + |+.|+.++++++.. ..+.++ +| .||||+ |.+++
T Consensus 1815 ----------~~--~~~~~viI~~D~D~~~a~G~~Aa~k~~~~l~~~G~~v~i~-~P--------~Dfnd~----g~~~~ 1869 (1960)
T TIGR02760 1815 ----------PK--FIPKNVVIVLDNDGEEAKSQRAIEKIINKFKQDNISARIV-FP--------DDWNDI----GEEEL 1869 (1960)
T ss_pred ----------CC--CCCceEEEEeCCCCcccchHHHHHHHHHHHHhCCCeeEEe-CC--------chhhhh----hHHHH
Confidence 01 12379999999994 5 99999999998832 245544 56 288888 44566
Q ss_pred ceeeecc
Q 005204 413 KEVVENA 419 (709)
Q Consensus 413 ~~~l~~A 419 (709)
.+.++.+
T Consensus 1870 ~~~l~~~ 1876 (1960)
T TIGR02760 1870 QKQLMRA 1876 (1960)
T ss_pred HHHHHHh
Confidence 6665544
No 71
>PRK07078 hypothetical protein; Validated
Probab=99.53 E-value=1.8e-13 Score=159.30 Aligned_cols=222 Identities=19% Similarity=0.246 Sum_probs=136.0
Q ss_pred CceEEEEeeCCCeeEEEEeccccccccccccccccccccchhhhccchhhhhhhccccccCCcCcHHHHHHHHhCCCCHH
Q 005204 155 LSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAE 234 (709)
Q Consensus 155 ~s~sv~i~~~~~~~~~~Cf~~~Cg~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~YL~~RGI~~~ 234 (709)
.||+|..... ..|.|.||+ ||.+|+++++......... ...|+ ++-.++.++|...-..+.
T Consensus 59 ~Sl~v~l~~~-~aG~W~D~a--tg~~GDlldlia~~~g~~~------~~~f~----------~~~~ea~~~lg~~~~~p~ 119 (759)
T PRK07078 59 DSLEVVLDGE-KAGLWTDRA--TGDGGDVFALIAAQLGLDV------HTDFP----------RVLDMAAELLGRARATPV 119 (759)
T ss_pred CceEEEecCC-CccceeecC--CCCCCCHHHHHHHHcCCCc------chhHH----------HHHHHHHHHhCCCCCCCC
Confidence 4888877633 489999999 8999999998765421100 00111 111233333321000000
Q ss_pred HHHHccccccCCCCeeEEEEeEe-cCCEEEEEEeecCC----Ccccc--c------CCCCCccccccccCCCCeEEEEcC
Q 005204 235 TLRRNRVMQKRHGHEVVIAFPYW-RNGKLVNCKYRDFN----KKFWQ--E------KDTEKVFYGLDDIEGESDIIIVEG 301 (709)
Q Consensus 235 ~~~~~~~~~~~~g~~~~i~fP~~-~~G~lv~~~~R~~~----kk~~~--~------~~~~~~lyg~~~i~~~~~viI~EG 301 (709)
.-+.+....... ......+||. .+|+++...+|... |.|.+ + +.....||+++.+.....|+||||
T Consensus 120 ~~~~~~~p~~~~-~~~~~~~~Y~D~~G~~~~~v~R~~~~~~~K~fr~~~g~~~~~~~~~~~pLy~lp~l~~a~~V~lvEG 198 (759)
T PRK07078 120 RKRKKSPPVDDL-GPATAKWDYLDAAGKLIAVVYRYDPPGRRKEFRPWDAKRRKMAPPEPRPLYNQPGLLSAEQVVLVEG 198 (759)
T ss_pred CcccCCCCcccC-CCceeEEEEECCCCCEEEEEEeecCCCCCceeecccCCcceecCCCCcCCcCchhhhcCCeEEEEeC
Confidence 000000000001 1234557776 78998888888762 44433 1 133567899998877789999999
Q ss_pred hhhHHHHHHhCCceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCcCEEEEEecCChhhHHHHHHHHHHh---
Q 005204 302 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV--- 378 (709)
Q Consensus 302 ~~DaLsl~q~g~~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~~~Ivi~~DnD~aG~~aa~~~a~~l--- 378 (709)
|.||.+++++|+. +++.+.|++.... +.+ +..|.+ ++|+||+|||++|+++|+++++.|
T Consensus 199 Ek~adal~~~g~~-att~~~Ga~~~~~-----------~~d-----~~~L~g-~~VvI~pD~D~~G~~~a~~va~~l~~~ 260 (759)
T PRK07078 199 EKCAQALIDAGVV-ATTAMHGANAPVD-----------KTD-----WSPLAG-KAVLIWPDRDKPGWEYADRAAQAILSA 260 (759)
T ss_pred hHHHHHHHhcCCe-EEecCCCCCCCcc-----------ccc-----ccccCC-CEEEEEcCCChHHHHHHHHHHHHHHhc
Confidence 9999999999987 4555667764211 111 233666 799999999999999999999998
Q ss_pred CCcceEEEEcCCCCCCCCCCCHHHHHHhc-CCCccceee
Q 005204 379 GRERCWRVRWPKKNDVDHFKDANEVLMYL-GPGALKEVV 416 (709)
Q Consensus 379 ~~~~~~iv~~P~~~~~~~~kD~ND~l~~~-g~e~l~~~l 416 (709)
+...|.++ +|. ..-+.++|++|++..+ +.+++....
T Consensus 261 g~~~~~v~-~p~-~~~~~~~D~aD~~~~G~~~~~~~~~~ 297 (759)
T PRK07078 261 GASSCAVL-LPP-EDLPEGWDAADAIAEGFDVAGFLAHG 297 (759)
T ss_pred CCeEEEEE-ecC-cccCcCCCHHHHHHcCCCHHHHHhhc
Confidence 34344444 453 1235788999999985 334444333
No 72
>COG4643 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.47 E-value=2e-13 Score=138.46 Aligned_cols=136 Identities=21% Similarity=0.207 Sum_probs=90.3
Q ss_pred EEEEeEecCCEEEEEEeecC--CCcccccCCCCCccccccc-cCCCCeEEEEcChhhHHHHHHhCCceEEEcCCCCCCCC
Q 005204 251 VIAFPYWRNGKLVNCKYRDF--NKKFWQEKDTEKVFYGLDD-IEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSV 327 (709)
Q Consensus 251 ~i~fP~~~~G~lv~~~~R~~--~kk~~~~~~~~~~lyg~~~-i~~~~~viI~EG~~DaLsl~q~g~~~~val~~G~~~~~ 327 (709)
.++.+.+.+|++.+.++... .|+|..++..+..++-+.. .....++||+||+..++++.++....+++. ..+.+
T Consensus 161 slip~~d~~Gel~~lq~I~~dG~Krf~~Ggr~kg~f~p~~g~~~~aa~lvi~EGyATal~i~~~~ga~v~aA-i~agN-- 237 (366)
T COG4643 161 SLIPLRDADGELTGLQLIQPDGTKRFLKGGRVKGCFIPLGGLAGPAARLVIAEGYATALSISQATGAPVAAA-IDAGN-- 237 (366)
T ss_pred ceEEEEcCCCCEeeeEEEcCCccceeccCCcccceeeecCCCcccccceEEeechhHHHHHHHHhhhhHHhh-hhccc--
Confidence 45555669999999998666 5788776544433333331 223456999999999999999864433332 22222
Q ss_pred CCCCCCchhhhhhHHHHHhHhhhhcCcCEEEEEecCCh-----hhHHHHHHHHHHhCCcceEEEEcCCCCCCCCCCCHHH
Q 005204 328 SKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDP-----PGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 402 (709)
Q Consensus 328 ~~~~L~~~~~~~~~~~l~~~~~~L~~~~~Ivi~~DnD~-----aG~~aa~~~a~~l~~~~~~iv~~P~~~~~~~~kD~ND 402 (709)
|..+.+.+...| +..+|+||.|+|. +|+..|++++...... +.+|. -..-||+|
T Consensus 238 ----ll~VA~al~~~~---------Pda~iIIaAD~D~~~~nnpG~t~A~eaA~Avng~----~~lP~----~~~adwpD 296 (366)
T COG4643 238 ----LLAVASALRKKF---------PDAQIIIAADDDINTANNPGLTKAEEAAQAVNGT----VALPP----FGPADWPD 296 (366)
T ss_pred ----HHHHHHHHHHhC---------CCcceEEEeccccccCCCcchHHHHHHHHhhCce----eecCC----CCCCcCcc
Confidence 455554443332 5579999999996 8999999999887553 44452 12269999
Q ss_pred HHHhcCCC
Q 005204 403 VLMYLGPG 410 (709)
Q Consensus 403 ~l~~~g~e 410 (709)
+....+..
T Consensus 297 ~~tq~n~l 304 (366)
T COG4643 297 GFTQFNDL 304 (366)
T ss_pred hhhhcchh
Confidence 88876543
No 73
>PF13155 Toprim_2: Toprim-like
Probab=99.39 E-value=6.4e-13 Score=116.29 Aligned_cols=85 Identities=31% Similarity=0.388 Sum_probs=59.1
Q ss_pred EEEcChhhHHHHHHhCCceE----EEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhh--cCcCEEEEEecCChhhHHH
Q 005204 297 IIVEGEMDKLSMEEAGFLNC----VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL--KQASRIILATDGDPPGQAL 370 (709)
Q Consensus 297 iI~EG~~DaLsl~q~g~~~~----val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L--~~~~~Ivi~~DnD~aG~~a 370 (709)
|||||++||||++|++..+. +++++++... . .....+| .+.++|++|+|||+||+++
T Consensus 1 ~v~Eg~iDaLS~~~~~~~~~~~~~~~l~~~~~~~------~-----------~~~~~~l~~~~~~~i~l~~DnD~aG~~~ 63 (96)
T PF13155_consen 1 VVFEGPIDALSYYQLGKENIKDNSLSLAGGGTLS------E-----------KQQIKFLKENPYKKIVLAFDNDEAGRKA 63 (96)
T ss_pred cEEeCHHHHHHHHHhCchhcCCceEEEECCchHH------H-----------HHHHHHHHhCCCCcEEEEeCCCHHHHHH
Confidence 69999999999999987542 4544333320 0 1223445 3447899999999999999
Q ss_pred HHHHHHHhCCc-----ceEEEEcCCCCCCCCCCCHHHHH
Q 005204 371 AEELARRVGRE-----RCWRVRWPKKNDVDHFKDANEVL 404 (709)
Q Consensus 371 a~~~a~~l~~~-----~~~iv~~P~~~~~~~~kD~ND~l 404 (709)
++++.+.+... .+.+..+| .+|||||+|
T Consensus 64 ~~~~~~~l~~~~~~~~~~~~~~~~------~~KD~Nd~L 96 (96)
T PF13155_consen 64 AEKLQKELKEEGFPNIKVRIEDPP------DGKDWNDYL 96 (96)
T ss_pred HHHHHHHHHhhCCCcceeeecCCC------CCcCchhhC
Confidence 99999988542 23333333 459999986
No 74
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.39 E-value=5.3e-12 Score=120.73 Aligned_cols=163 Identities=20% Similarity=0.229 Sum_probs=111.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHHHHH
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l 548 (709)
+++|.|+||+|||+|+.+++..++.+ |.+|+|++.|........++...... ..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e~~~~~~~~~~~~~~~~------------------------~~- 54 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIEEEIEELTERLIGESLK------------------------GA- 54 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCcchHHHHHHHhhhhhc------------------------cc-
Confidence 47899999999999999999999886 99999999999988776654211000 00
Q ss_pred hcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCC-CCCHHHHHHHHHHHHHHHHHHhCcEEEEE
Q 005204 549 SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV-SQTETEYVSQMLTMVKRFAQHHACHVWFV 627 (709)
Q Consensus 549 ~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~-~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v 627 (709)
.....++.. .........+...+.......++++||||++..+...... .......+.+.+..|...+++.+++|+++
T Consensus 55 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~ 133 (165)
T cd01120 55 LDNLIIVFA-TADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFT 133 (165)
T ss_pred cccEEEEEc-CCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEE
Confidence 012223221 1223334444445556667788999999988876532110 00112345678888999999999999999
Q ss_pred ec-cCCCCCCCCCCCccccccCchhhhcccceEEEEee
Q 005204 628 AH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664 (709)
Q Consensus 628 ~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r 664 (709)
+| ++...... . +.+|+..+++.||.++.+.|
T Consensus 134 ~~~~~~~~~~~----~--~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 134 LQVPSGDKGDP----R--LTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred EecCCccccCc----c--cccCccceeeecceEEEEeC
Confidence 99 44433211 1 17788999999999999864
No 75
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.35 E-value=4.5e-11 Score=115.81 Aligned_cols=211 Identities=16% Similarity=0.159 Sum_probs=146.0
Q ss_pred ccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccc
Q 005204 451 ISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN 528 (709)
Q Consensus 451 i~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~ 528 (709)
+++|-++||+-+| ++-|.|++|-|..|+|||.|.+|+++-+..+ |.+|.|+|.|++..+....+.+.-.++..
T Consensus 10 i~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~-g~~v~yvsTe~T~refi~qm~sl~ydv~~---- 84 (235)
T COG2874 10 IKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMN-GYRVTYVSTELTVREFIKQMESLSYDVSD---- 84 (235)
T ss_pred ccCCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhC-CceEEEEEechhHHHHHHHHHhcCCCchH----
Confidence 7789999999998 9999999999999999999999999999988 99999999999999998888664333211
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCcceEEecC----CCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHH
Q 005204 529 YGGSAERMTVEEFEQGKAWLSNTFSLIRCEN----DSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 604 (709)
Q Consensus 529 ~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~----~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~ 604 (709)
..+...+.++..+- .+....+.+++.+-...+...-++||||++..++.- ++.+
T Consensus 85 -----------------~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~-----~~~~ 142 (235)
T COG2874 85 -----------------FLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATY-----DSED 142 (235)
T ss_pred -----------------HHhcceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhc-----ccHH
Confidence 12334444442210 112223445555555555677899999988776531 2456
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEeee
Q 005204 605 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 684 (709)
Q Consensus 605 ~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~R 684 (709)
++.+++..++.|+. .|-.|+++.|+..-... . -.-+.+.||+.+.++..+-.. .-.-.+.+.|-|
T Consensus 143 ~vl~fm~~~r~l~d-~gKvIilTvhp~~l~e~-----~------~~rirs~~d~~l~L~~~~~Gg---~~~~~~~i~K~~ 207 (235)
T COG2874 143 AVLNFMTFLRKLSD-LGKVIILTVHPSALDED-----V------LTRIRSACDVYLRLRLEELGG---DLIKVLEIVKYR 207 (235)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEeChhhcCHH-----H------HHHHHHhhheeEEEEhhhhCC---eeeEEEEEeeec
Confidence 78899999999997 45556666664333210 1 124778999999998765221 124567888888
Q ss_pred CCCcceeeeEEEEEEcccc
Q 005204 685 NKVVGTIGEAFLSYNRVTG 703 (709)
Q Consensus 685 ~g~~G~~g~~~l~fd~~t~ 703 (709)
....+.-..+++.-+|..|
T Consensus 208 ga~~s~~~~I~F~V~P~~G 226 (235)
T COG2874 208 GARKSFQNIISFRVEPGFG 226 (235)
T ss_pred CchhhcCCceeEEecCCCc
Confidence 7654433345666666554
No 76
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=99.32 E-value=4.6e-11 Score=121.59 Aligned_cols=150 Identities=13% Similarity=0.181 Sum_probs=106.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhc---------CCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCC
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHA---------GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE 534 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~---------g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~ 534 (709)
++.|-..+|+|.+|+|||+++++++.+++... ..+|+|+|+|...+.+++|+-....++
T Consensus 86 fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~m------------ 153 (402)
T COG3598 86 FRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARM------------ 153 (402)
T ss_pred hhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHc------------
Confidence 78888899999999999999999999998752 367999999999999999987665554
Q ss_pred CCCHHHHHHHHHH-HhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHH
Q 005204 535 RMTVEEFEQGKAW-LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 613 (709)
Q Consensus 535 ~l~~e~~~~~~~~-l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~L 613 (709)
.+++.+++.+.-| +...- ...+.... .+..+......+..+++|||||+.....+. +.-+..+.++++++
T Consensus 154 gLsPadvrn~dltd~~Gaa-----~~~d~l~p-kl~rRfek~~~Q~rp~~vViDp~v~f~~G~---s~s~vqv~~fi~~~ 224 (402)
T COG3598 154 GLSPADVRNMDLTDVSGAA-----DESDVLSP-KLYRRFEKILEQKRPDFVVIDPFVAFYEGK---SISDVQVKEFIKKT 224 (402)
T ss_pred CCChHhhhheeccccccCC-----CccccccH-HHHHHHHHHHHHhCCCeEEEcchhhhcCCc---cchhHHHHHHHHHH
Confidence 3444444332110 11100 00001111 333344444556679999999988877543 23346788999999
Q ss_pred HHHHHHhCcEEEEEeccCCCC
Q 005204 614 KRFAQHHACHVWFVAHPRQLH 634 (709)
Q Consensus 614 k~lA~~~~i~Vi~v~h~rk~~ 634 (709)
+++|..++|+||.+||+.+..
T Consensus 225 rkla~~l~caIiy~hHtskss 245 (402)
T COG3598 225 RKLARNLECAIIYIHHTSKSS 245 (402)
T ss_pred HHHHHhcCCeEEEEecccccc
Confidence 999999999999999955543
No 77
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]
Probab=99.30 E-value=4.3e-12 Score=126.55 Aligned_cols=167 Identities=15% Similarity=0.136 Sum_probs=110.4
Q ss_pred ccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHh--c---CCeEEEEECCCCHHHHHHHHHHHHcC
Q 005204 449 FGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH--A---GWKFVLCSMENKVREHARKLLEKHIK 521 (709)
Q Consensus 449 ~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~--~---g~~Vly~SlE~~~~~~~~Rl~~~~~g 521 (709)
..++||...||.+++ ++.+.+|.|+|.+|+|||.|++|+++.+..- + |..++|++.|.+-. .+|+.+...-
T Consensus 82 ~~lttgc~~LD~~L~GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP--~rRL~qL~~~ 159 (351)
T KOG1564|consen 82 SKLTTGCVALDECLRGGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFP--TRRLHQLSHT 159 (351)
T ss_pred hhcccccHHHHHHhcCCcccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCc--HHHHHHHHHh
Confidence 468999999999998 9999999999999999999999999987532 2 67899999997632 3343332222
Q ss_pred CCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHH----HHHHHhcCCcEEEEccCcccccCCC
Q 005204 522 KPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLA----KAAVLRHGVRGLVIDPYNELDHQRP 597 (709)
Q Consensus 522 ~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i----~~~~~~~~~~lIVID~~~~l~~~~~ 597 (709)
.+.. ..++...-......++.++..+ .+++.++..+ -.+..+.++++|||||...++...-
T Consensus 160 ~~~r----------p~~~~~~~~~~Npgd~IFv~~~-----~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~fR~E~ 224 (351)
T KOG1564|consen 160 LPQR----------PNPEKELNYNDNPGDHIFVENV-----HDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALFRSEF 224 (351)
T ss_pred cccC----------CCcchhhhhccCCCceEEEEec-----cchhhHHHHHhhhccceeccCcceEEEEehhhHHHHHHh
Confidence 2111 0111110011111223444433 3344433333 2234567799999999988775321
Q ss_pred C---C--CCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCC
Q 005204 598 V---S--QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQ 632 (709)
Q Consensus 598 ~---~--~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk 632 (709)
. . ..+...+..+..+|+.+|.+++++|++++| ..+
T Consensus 225 d~~~Sdl~~r~~~l~rla~~Lr~LA~~~~~aVV~~NQVtd~ 265 (351)
T KOG1564|consen 225 DYNPSDLKKRARHLFRLAGKLRQLASKFDLAVVCANQVTDR 265 (351)
T ss_pred ccChhhhhhHHHHHHHHHHHHHHHHHhcCccEEEeeccccc
Confidence 1 1 123457788999999999999999999999 444
No 78
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=99.27 E-value=2.9e-11 Score=101.70 Aligned_cols=75 Identities=29% Similarity=0.372 Sum_probs=57.8
Q ss_pred CeEEEEcChhhHHHHHHhCCceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCc-CEEEEEecCChhhHHHHH
Q 005204 294 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA-SRIILATDGDPPGQALAE 372 (709)
Q Consensus 294 ~~viI~EG~~DaLsl~q~g~~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~-~~Ivi~~DnD~aG~~aa~ 372 (709)
++++||||++|+||+++.|..++|+++ |+... .++.++|.++ ++|+||+|||.+|+++++
T Consensus 1 ~~v~i~EG~~D~ls~~~~g~~~~va~~-G~~~~------------------~~~~~~L~~~~~~vii~~D~D~aG~~a~~ 61 (79)
T cd03364 1 KKVILVEGYMDVIALHQAGIKNVVASL-GTALT------------------EEQAELLKRLAKEVILAFDGDEAGQKAAL 61 (79)
T ss_pred CeEEEEeCHHHHHHHHHcCCCCEEECC-CccCc------------------HHHHHHHHhcCCeEEEEECCCHHHHHHHH
Confidence 368999999999999999998889865 55431 0224556664 899999999999999999
Q ss_pred HHHHHhCC--cceEEEE
Q 005204 373 ELARRVGR--ERCWRVR 387 (709)
Q Consensus 373 ~~a~~l~~--~~~~iv~ 387 (709)
+++++|.. ..++++.
T Consensus 62 ~~~~~l~~~g~~~~~~~ 78 (79)
T cd03364 62 RALELLLKLGLNVRVLT 78 (79)
T ss_pred HHHHHHHHCCCeEEEEe
Confidence 99999833 2455443
No 79
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.24 E-value=1.2e-11 Score=121.69 Aligned_cols=195 Identities=15% Similarity=0.199 Sum_probs=127.9
Q ss_pred CCcccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHh-----cCCeEEEEECCCCHHHHHHHHHHH
Q 005204 446 GDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH-----AGWKFVLCSMENKVREHARKLLEK 518 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~-----~g~~Vly~SlE~~~~~~~~Rl~~~ 518 (709)
.....|+||...||+++| ++.=.+|.|+|.+|+|||.+..+|+..+..- -|.+++||..|.+-. ..|+...
T Consensus 92 ~~v~~ItTgs~~lD~ILGGGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFr--pdRi~~I 169 (335)
T KOG1434|consen 92 KTVGSITTGSSALDDILGGGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFR--PDRIKDI 169 (335)
T ss_pred hccceeecchHHHhhhhcCCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccc--hHHHHHH
Confidence 556789999999999998 8888999999999999999999998876432 268899999997622 2233222
Q ss_pred HcCCCccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHh-cCCcEEEEccCcccccCCC
Q 005204 519 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR-HGVRGLVIDPYNELDHQRP 597 (709)
Q Consensus 519 ~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~-~~~~lIVID~~~~l~~~~~ 597 (709)
.-+. .+.++.. +. +..++++. +...-++.+ ..+.....+ ...++||||+++.++..+.
T Consensus 170 Ae~~------------~~d~d~~------Ld-NI~y~Ra~-~se~qmelv-~~L~~~~se~g~~rlvIVDsIma~FRvDy 228 (335)
T KOG1434|consen 170 AERF------------KVDPDFT------LD-NILYFRAY-NSEEQMELV-YLLGDFLSEHGKYRLVIVDSIMALFRVDY 228 (335)
T ss_pred HHHh------------CCCHHHH------HH-HHHHHHHc-ChHHHHHHH-HHHHHHHhhcCcEEEEEEeceehheeecc
Confidence 2111 2333221 11 12222221 111112222 222222333 4689999999999987653
Q ss_pred CC---C-CHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCC-----CCCCCccccccCchhhhcccceEEEEeeCCC
Q 005204 598 VS---Q-TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNW-----VGEPPNLYDISGSAHFINKCDNGIVIHRNRD 667 (709)
Q Consensus 598 ~~---~-~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~-----~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~ 667 (709)
.+ . .+.+.+.+++.+|.++|+++|++|++++| ..+.... .+..| .|+-.+...+-+-+.+++.+.
T Consensus 229 ~grgeLseRqqkLn~ml~kl~~laeefnvAVfltNQvttdpga~~~f~s~~~kp-----~gGh~~aHAsttRlilrkgrg 303 (335)
T KOG1434|consen 229 DGRGELSERQQKLNQMLQKLNKLAEEFNVAVFLTNQVTTDPGAGMTFASQDLKP-----AGGHSWAHASTTRLILRKGRG 303 (335)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccEEEEEecceecCCcccccccccccCc-----cccchhhhhhheeEEEEcCCc
Confidence 31 1 13457788999999999999999999999 5444321 12222 456677788888888887763
Q ss_pred C
Q 005204 668 P 668 (709)
Q Consensus 668 ~ 668 (709)
+
T Consensus 304 ~ 304 (335)
T KOG1434|consen 304 D 304 (335)
T ss_pred c
Confidence 3
No 80
>PF13362 Toprim_3: Toprim domain
Probab=99.23 E-value=4.1e-11 Score=104.83 Aligned_cols=91 Identities=31% Similarity=0.350 Sum_probs=67.4
Q ss_pred eEEEEcChhhHHHH-HHhCCceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCcCEEEEEecCChh--hHHHH
Q 005204 295 DIIIVEGEMDKLSM-EEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP--GQALA 371 (709)
Q Consensus 295 ~viI~EG~~DaLsl-~q~g~~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~~~Ivi~~DnD~a--G~~aa 371 (709)
+++|+||++|+||+ .+....+++++. |+++ |.. +....+.++|+|+.|||.+ |++++
T Consensus 1 tl~i~EG~etals~~~~~~~~~~~a~~-~~~n------l~~-------------~~~~~~~~~vii~~D~D~~~~G~~~a 60 (96)
T PF13362_consen 1 TLIIAEGIETALSIAQQATGVPVVAAL-GAGN------LKN-------------VAIPEPGRRVIIAADNDKANEGQKAA 60 (96)
T ss_pred CEEEEEhHHHHHHHHHhcCCCeEEEEE-Chhh------hhh-------------hcCCCCCCeEEEEECCCCchhhHHHH
Confidence 48999999999999 666666778754 5544 221 1111467899999999999 99999
Q ss_pred HHHHHHhCCc--ceEEEEcCCCCCCCCCCCHHHHHHhcCCC
Q 005204 372 EELARRVGRE--RCWRVRWPKKNDVDHFKDANEVLMYLGPG 410 (709)
Q Consensus 372 ~~~a~~l~~~--~~~iv~~P~~~~~~~~kD~ND~l~~~g~e 410 (709)
.++++++... .+.++. | +..++||||+|+.+|.|
T Consensus 61 ~~~~~~~~~~g~~~~~~~-p----~~~g~D~ND~l~~~G~e 96 (96)
T PF13362_consen 61 EKAAERLEAAGIAVSIVE-P----GPEGKDWNDLLQARGKE 96 (96)
T ss_pred HHHHHHHHhCCCeEEEEC-C----CCCCchHHHHHHhhCCC
Confidence 9999998432 344444 3 24678999999998864
No 81
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=99.06 E-value=4.3e-10 Score=95.09 Aligned_cols=71 Identities=35% Similarity=0.597 Sum_probs=49.2
Q ss_pred CeEEEEcChhhHHHHHHhCCceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcC-cCEEEEEecCChhhHHHHH
Q 005204 294 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ-ASRIILATDGDPPGQALAE 372 (709)
Q Consensus 294 ~~viI~EG~~DaLsl~q~g~~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~-~~~Ivi~~DnD~aG~~aa~ 372 (709)
+.++||||++|+++++++|+++++++.+|... +. .+.. ...+.. .++|+||+|+|.+|++++.
T Consensus 1 k~viIvEG~~D~~~l~~~g~~~~v~~~g~~~~-------~~-~~~~--------~~~~~~~~~~Vii~~D~D~~G~~~a~ 64 (81)
T PF13662_consen 1 KEVIIVEGEFDAIALEQAGYKNVVAVLGGNLS-------PL-DQIL--------REKLEKKVKEVIIAFDNDKAGEKAAQ 64 (81)
T ss_dssp --EEEESSHHHHHHHHHTT-TTEEEESSSS----------H-HHHH--------HHHHH---SEEEEEEESSHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHhCCCeEEEECCCCCC-------hH-HHhC--------hHhhhccCceEEEEeCcCHHHHHHHH
Confidence 46899999999999999999999986543321 11 1111 122222 5899999999999999999
Q ss_pred HHHHHhCC
Q 005204 373 ELARRVGR 380 (709)
Q Consensus 373 ~~a~~l~~ 380 (709)
++++.|..
T Consensus 65 ~i~~~l~~ 72 (81)
T PF13662_consen 65 KIAKKLLP 72 (81)
T ss_dssp HHHHHHG-
T ss_pred HHHHHHHh
Confidence 99998843
No 82
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=99.02 E-value=1.2e-09 Score=91.94 Aligned_cols=68 Identities=32% Similarity=0.431 Sum_probs=53.2
Q ss_pred CeEEEEcChhhHHHHHHhCCceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCc-CEEEEEecCChhhHHHHH
Q 005204 294 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA-SRIILATDGDPPGQALAE 372 (709)
Q Consensus 294 ~~viI~EG~~DaLsl~q~g~~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~-~~Ivi~~DnD~aG~~aa~ 372 (709)
+.++||||++|+||+++.|..+++++ .|+.+. + +.+..+.+. ++|+||+|||.+|+++++
T Consensus 1 ~~v~i~EG~~Dals~~~~~~~~~~~~-~g~~~~------~------------~~~~~l~~~~~~vii~~D~D~~G~~~~~ 61 (79)
T cd01029 1 DEVIIVEGYMDVLALHQAGIKNVVAA-LGTANT------E------------EQLRLLKRFARTVILAFDNDEAGKKAAA 61 (79)
T ss_pred CEEEEEeCHHHHHHHHHcCCCCEEEC-CCccCc------H------------HHHHHHHhcCCEEEEEECCCHHHHHHHH
Confidence 36899999999999999999778885 466541 1 123444554 899999999999999999
Q ss_pred HHHHHhCC
Q 005204 373 ELARRVGR 380 (709)
Q Consensus 373 ~~a~~l~~ 380 (709)
++.+.+..
T Consensus 62 ~~~~~~~~ 69 (79)
T cd01029 62 RALELLLA 69 (79)
T ss_pred HHHHHHHH
Confidence 99888743
No 83
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=98.98 E-value=7.3e-11 Score=103.03 Aligned_cols=64 Identities=25% Similarity=0.383 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhcCcccccccCCceeeeecCCCCCCCCCCCceEEEEeeCCCeeEEEEecccccccccccccccccc
Q 005204 116 SWEILKIKLKQLGLDIGRCAPGVENRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNR 191 (709)
Q Consensus 116 ~~~~l~~~L~~~Gi~~~~~~~G~~~~~~CPfc~~~~~~~~s~sv~i~~~~~~~~~~Cf~~~Cg~~G~~~~~~~~~~ 191 (709)
...+|.++++.+ +.++ +.|++++++||||+++ +|||+|+.+ ++.|+||+ ||.+|++++|++...
T Consensus 11 ~~~~i~~v~~~~-~~l~--~~G~~~~~~CPfH~d~---~pS~~i~~~----k~~~~Cf~--Cg~~Gd~i~~v~~~~ 74 (97)
T PF01807_consen 11 SRIDIVDVIERY-IKLK--RRGREYRCLCPFHDDK---TPSFSINPD----KNRFKCFG--CGKGGDVIDFVMKYE 74 (97)
T ss_dssp HCS-HHHHHCCC-S--E--EETTEEEE--SSS--S---S--EEEETT----TTEEEETT--T--EE-HHHHHHHHH
T ss_pred HhCCHHHHHHHh-cccc--ccCCeEEEECcCCCCC---CCceEEECC----CCeEEECC--CCCCCcHHhHHHHHh
Confidence 346677788887 6666 4699999999999984 577777766 89999998 999999999997653
No 84
>smart00400 ZnF_CHCC zinc finger.
Probab=98.78 E-value=2.7e-09 Score=82.86 Aligned_cols=43 Identities=26% Similarity=0.467 Sum_probs=36.9
Q ss_pred eeeecCCCCCCCCCCCceEEEEeeCCCeeEEEEecccccccccccccccccc
Q 005204 140 NRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWKGSTSALVDNNR 191 (709)
Q Consensus 140 ~~~~CPfc~~~~~~~~s~sv~i~~~~~~~~~~Cf~~~Cg~~G~~~~~~~~~~ 191 (709)
++++||||+++ +|||+|+.. ++.||||+ ||.+|++++|++...
T Consensus 1 ~~~~cPfh~d~---~pSf~v~~~----kn~~~Cf~--cg~gGd~i~fv~~~~ 43 (55)
T smart00400 1 YKGLCPFHGEK---TPSFSVSPD----KQFFHCFG--CGAGGNVISFLMKYD 43 (55)
T ss_pred CcccCcCCCCC---CCCEEEECC----CCEEEEeC--CCCCCCHHHHHHHHH
Confidence 35689999985 788888876 89999998 999999999998653
No 85
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=98.77 E-value=7.2e-08 Score=101.36 Aligned_cols=204 Identities=11% Similarity=0.109 Sum_probs=127.6
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 543 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~ 543 (709)
...|...+|-|.||+|||+|++.++..+.. ..+|+|+|.-.+...+.+.+......++...+ +..
T Consensus 7 ~~~G~TLLIKG~PGTGKTtfaLelL~~l~~--~~~v~YISTRVd~d~vy~~y~~~~~~i~~~~v-------------lDa 71 (484)
T PF07088_consen 7 QEPGQTLLIKGEPGTGKTTFALELLNSLKD--HGNVMYISTRVDQDTVYEMYPWIEESIDPTNV-------------LDA 71 (484)
T ss_pred CCCCcEEEEecCCCCCceeeehhhHHHHhc--cCCeEEEEeccCHHHHHHhhhhhccccChhhh-------------hhh
Confidence 567999999999999999999998887765 58899999998887766555322222221100 000
Q ss_pred HHHHHh-cCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCc
Q 005204 544 GKAWLS-NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHAC 622 (709)
Q Consensus 544 ~~~~l~-~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i 622 (709)
..+.+. .....+ ......++.+.+.++++......-+|++||.-.++..-....+..+.+..+...|.+||++.++
T Consensus 72 tQd~~~~~~~~~v---p~~~l~~ds~~~f~~~i~~~~k~~iI~~DSWdaiieyla~~~~~~ed~e~l~~dLv~lard~g~ 148 (484)
T PF07088_consen 72 TQDPFELPLDKDV---PFERLDIDSFRDFVDKINEAGKKPIIAFDSWDAIIEYLAEEHDEPEDIETLTNDLVELARDMGI 148 (484)
T ss_pred ccchhhccccccC---cccccCHHHHHHHHHHhhhcccCcEEEEecHHHHHHHhhhhhcCcHHHHHHHHHHHHHHhhcCc
Confidence 011110 000000 1123346777777765543456779999984433321111122233366788888899999999
Q ss_pred EEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCCCCCCCCCCeEEEEEEeeeCCCcceeeeEEEEEEccc
Q 005204 623 HVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVT 702 (709)
Q Consensus 623 ~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~~~e~~~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t 702 (709)
.+|++....+.. .+++.+|-|+.|.-..+ +++ .-.+.|.+.|.|.=..+.. ..-|--..
T Consensus 149 ~LIlVsEsa~~~----------------~LdYivDGVVTL~v~~d-erG-R~~R~L~LeKLRGV~I~q~---~Y~fTL~n 207 (484)
T PF07088_consen 149 NLILVSESAENE----------------PLDYIVDGVVTLQVKND-ERG-RTRRYLRLEKLRGVRIKQR---LYPFTLAN 207 (484)
T ss_pred eEEEEEecCCCC----------------cchheeeeEEEEEeccc-cCC-ceEEEEEehhhcCcccCCc---cceEEeeC
Confidence 999999865443 37899999999953332 332 3368899999997544442 13355567
Q ss_pred cEEE
Q 005204 703 GEYM 706 (709)
Q Consensus 703 ~rf~ 706 (709)
|||.
T Consensus 208 GrF~ 211 (484)
T PF07088_consen 208 GRFR 211 (484)
T ss_pred CEEE
Confidence 7774
No 86
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=98.58 E-value=1.9e-07 Score=77.67 Aligned_cols=71 Identities=37% Similarity=0.451 Sum_probs=49.1
Q ss_pred CeEEEEcChhhHHHHHHhCCc--eEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCcCEEEEEecCChhhHHHH
Q 005204 294 SDIIIVEGEMDKLSMEEAGFL--NCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALA 371 (709)
Q Consensus 294 ~~viI~EG~~DaLsl~q~g~~--~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~~~Ivi~~DnD~aG~~aa 371 (709)
++++||||++|++++++++.. .++++ .|+.. +.. .+....+.... .+|+||+|+|.+|++++
T Consensus 1 ~~l~ivEg~~da~~~~~~~~~~~~~~~~-~G~~~-------~~~-------~~~~l~~~~~~-~~Iii~~D~D~~G~~~~ 64 (76)
T smart00493 1 KVLIIVEGPADAIALEKAGGFGGNVVAL-GGHLL-------KKE-------IIKLLKRLAKK-KEVILATDPDREGEAIA 64 (76)
T ss_pred CEEEEEcCHHHHHHHHHhcCCCEEEEEE-eeeec-------HHH-------HHHHHHHHhcC-CEEEEEcCCChhHHHHH
Confidence 368999999999999999984 44553 34432 110 11111122222 68999999999999999
Q ss_pred HHHHHHhCC
Q 005204 372 EELARRVGR 380 (709)
Q Consensus 372 ~~~a~~l~~ 380 (709)
+++++.+..
T Consensus 65 ~~i~~~l~~ 73 (76)
T smart00493 65 WKLAELLKP 73 (76)
T ss_pred HHHHHHhhh
Confidence 999998754
No 87
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=98.56 E-value=6.3e-07 Score=82.40 Aligned_cols=112 Identities=19% Similarity=0.266 Sum_probs=73.3
Q ss_pred CCeEEEEcChhhHHHHHHhCCceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhh-cCcCEEEEEecCC------h
Q 005204 293 ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL-KQASRIILATDGD------P 365 (709)
Q Consensus 293 ~~~viI~EG~~DaLsl~q~g~~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L-~~~~~Ivi~~DnD------~ 365 (709)
.-+|+||||..-|.++.+.|+. ++++| |..+......-.. ......+|...+..| .+.++|+||||.| .
T Consensus 10 ~~pi~ItEG~kKA~al~s~G~~-aIalp-GV~~~~~~~~~~~--~~~~~~~L~p~L~~~~~~gr~v~iaFD~D~~~~Tn~ 85 (130)
T PF12965_consen 10 NIPIWITEGAKKAGALLSQGYP-AIALP-GVNNGYRWPKDEG--DKIGKRRLIPELAKLAKPGREVYIAFDADTKPKTNK 85 (130)
T ss_pred CccEEEEechHHHHHHHcCCce-EEEeC-ceecccccccccc--ccccchhcchhHHHhccCCceEEEEecCCCccchhH
Confidence 4579999999999999999876 78987 5544321100000 000001111223333 3568999999999 3
Q ss_pred hhHHHHHHHHHHhCC--cceEEEEcCCCCCCCCCCCHHHHHHhcCCCcc
Q 005204 366 PGQALAEELARRVGR--ERCWRVRWPKKNDVDHFKDANEVLMYLGPGAL 412 (709)
Q Consensus 366 aG~~aa~~~a~~l~~--~~~~iv~~P~~~~~~~~kD~ND~l~~~g~e~l 412 (709)
.=.+|.+++++.|.. -.+.++.||. ..+|=++|+|.++|+++|
T Consensus 86 ~V~~a~~~l~~~L~~~G~~v~~~~w~~----~~~KGiDD~l~~~G~~~f 130 (130)
T PF12965_consen 86 NVRRAIKRLGKLLKEAGCKVKIITWPP----GEGKGIDDLLAAKGPDAF 130 (130)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEeCC----CCCCCHhHHHHhcCcccC
Confidence 445667777777722 3678889983 578899999999998764
No 88
>PRK04031 DNA primase; Provisional
Probab=98.56 E-value=1.1e-07 Score=101.14 Aligned_cols=101 Identities=26% Similarity=0.414 Sum_probs=75.2
Q ss_pred cCCCCeEEEEcChhhHHHHHHhCCceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCcCEEEEEecCChhhHH
Q 005204 290 IEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQA 369 (709)
Q Consensus 290 i~~~~~viI~EG~~DaLsl~q~g~~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~~~Ivi~~DnD~aG~~ 369 (709)
+.+.+.++||||++|+++|+++|+.|+|++ .|+. ++.. ...|.+.++|++|+|+|.+|+.
T Consensus 166 i~k~~~iIVVEG~~DVi~L~~aGi~nvVAt-~GT~-------l~~~------------i~~l~k~~~Vil~~DgD~aGe~ 225 (408)
T PRK04031 166 VDDSDAIIVVEGRADVLNLLRYGIKNAIAV-EGTN-------VPET------------IIELSKKKTVTAFLDGDRGGEL 225 (408)
T ss_pred cccCCeEEEEeCHHHHHHHHhcccceEEEe-CCcc-------cHHH------------HHHHhcCCCEEEEECCCHHHHH
Confidence 445678999999999999999999999995 5774 3321 2223346899999999999999
Q ss_pred HHHHHHHHhCCcceEEEEcCCCCCCCCCCCHHHHHHhcCCCccceeeeccccc
Q 005204 370 LAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 422 (709)
Q Consensus 370 aa~~~a~~l~~~~~~iv~~P~~~~~~~~kD~ND~l~~~g~e~l~~~l~~A~~~ 422 (709)
+.+.+.+ .+ ...++.+.| .++|+.++ ..+++.++|.++.|.
T Consensus 226 I~k~l~~-v~-~~d~VaraP------~G~dVE~l----s~eeI~kAL~~~~p~ 266 (408)
T PRK04031 226 ILKELLQ-VA-DIDYVARAP------PGKEVEEL----TKKEIAKALRNKVPV 266 (408)
T ss_pred HHHHHHh-hc-ceeEEecCC------CCCChhhC----CHHHHHHHHHhcCCH
Confidence 9888876 43 245666766 35888887 355777788777663
No 89
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=98.54 E-value=2.6e-07 Score=77.64 Aligned_cols=68 Identities=25% Similarity=0.429 Sum_probs=52.8
Q ss_pred CeEEEEcChhhHHHHHHhCC-ceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcC-cCEEEEEecCChhhHHHH
Q 005204 294 SDIIIVEGEMDKLSMEEAGF-LNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ-ASRIILATDGDPPGQALA 371 (709)
Q Consensus 294 ~~viI~EG~~DaLsl~q~g~-~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~-~~~Ivi~~DnD~aG~~aa 371 (709)
+.++||||..|+.+++++|. .++++. .|+.. +.. +.+.+.. .+.|+|++|+|.+|++++
T Consensus 2 ~~vIiVEG~~D~~~l~~~g~~~~~i~t-~Gt~~-------~~~-----------~~~~l~~~~~~VIiltD~D~aG~~i~ 62 (81)
T cd01027 2 GEVIIVEGKNDTESLKKLGIEAEIIET-NGSII-------NKE-----------TIELIKKAYRGVIILTDPDRKGEKIR 62 (81)
T ss_pred CeEEEEEchHHHHHHHHhCCCccEEEE-CCCcC-------CHH-----------HHHHHHHhCCEEEEEECCCHHHHHHH
Confidence 46899999999999999998 777874 56653 321 1222222 589999999999999999
Q ss_pred HHHHHHhCC
Q 005204 372 EELARRVGR 380 (709)
Q Consensus 372 ~~~a~~l~~ 380 (709)
.++.+.|..
T Consensus 63 ~~~~~~l~~ 71 (81)
T cd01027 63 KKLSEYLSG 71 (81)
T ss_pred HHHHHHhcc
Confidence 999999853
No 90
>PRK04296 thymidine kinase; Provisional
Probab=98.43 E-value=2.1e-06 Score=84.95 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=87.9
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC--CCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHH
Q 005204 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM--ENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 543 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl--E~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~ 543 (709)
.|.+++++|++|+||||++++++..++.. |.+|+++.. +.... ..++ ....|++...
T Consensus 1 ~g~i~litG~~GsGKTT~~l~~~~~~~~~-g~~v~i~k~~~d~~~~--~~~i-~~~lg~~~~~----------------- 59 (190)
T PRK04296 1 MAKLEFIYGAMNSGKSTELLQRAYNYEER-GMKVLVFKPAIDDRYG--EGKV-VSRIGLSREA----------------- 59 (190)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHHHHc-CCeEEEEecccccccc--CCcE-ecCCCCcccc-----------------
Confidence 37899999999999999999999999876 999999943 43211 1111 1111211100
Q ss_pred HHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcE
Q 005204 544 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 623 (709)
Q Consensus 544 ~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~ 623 (709)
+.+ ...+++...+.. ...++++||||....+ . + .++ .+|.+.++..+++
T Consensus 60 ---------~~~-------~~~~~~~~~~~~--~~~~~dvviIDEaq~l-~-------~----~~v-~~l~~~l~~~g~~ 108 (190)
T PRK04296 60 ---------IPV-------SSDTDIFELIEE--EGEKIDCVLIDEAQFL-D-------K----EQV-VQLAEVLDDLGIP 108 (190)
T ss_pred ---------eEe-------CChHHHHHHHHh--hCCCCCEEEEEccccC-C-------H----HHH-HHHHHHHHHcCCe
Confidence 000 223455544444 3457899999966322 1 1 112 3355566789999
Q ss_pred EEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 624 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 624 Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
|+++.....-.+. .+.++..+...||.|..|..--
T Consensus 109 vi~tgl~~~~~~~--------~f~~~~~L~~~aD~V~~l~~vC 143 (190)
T PRK04296 109 VICYGLDTDFRGE--------PFEGSPYLLALADKVTELKAIC 143 (190)
T ss_pred EEEEecCcccccC--------cCchHHHHHHhcCeEEEeeEEc
Confidence 9999884333221 1446678889999999987654
No 91
>PF08275 Toprim_N: DNA primase catalytic core, N-terminal domain; InterPro: IPR013264 This is the N-terminal, catalytic core domain of DNA primases. DNA primase (2.7.7 from EC) is a nucleotidyltransferase which synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork. It can also prime the leading strand and has been implicated in cell division []. ; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A 2AU3_A.
Probab=98.26 E-value=1.1e-06 Score=80.95 Aligned_cols=70 Identities=24% Similarity=0.408 Sum_probs=49.0
Q ss_pred HHHHHHHHhCCCCHHHHHHcccccc--CC---------------------------------CCeeEEEEeEe-cCCEEE
Q 005204 220 NELRAYFAERLISAETLRRNRVMQK--RH---------------------------------GHEVVIAFPYW-RNGKLV 263 (709)
Q Consensus 220 ~~~~~YL~~RGI~~~~~~~~~~~~~--~~---------------------------------g~~~~i~fP~~-~~G~lv 263 (709)
.++++||.+|||++++++.|+++-. .+ -+.++|+||+. ..|+||
T Consensus 12 ~~a~~YL~~Rgl~~e~i~~F~lGyap~~~~~l~~~l~~~~~~~~~l~~~GL~~~~~~~~~~d~F~~RiifPI~d~~G~vv 91 (128)
T PF08275_consen 12 KEALEYLKKRGLSDETIKKFQLGYAPGNWDSLLEYLKKKGFSLEELLEAGLIRKNENGGYYDFFRGRIIFPIRDERGRVV 91 (128)
T ss_dssp HHHHHHHHHTT--HHHHHHTT-EEE-SCSCHHHHHHCCCCHHHHHHCCTTCEECCTTTEEEETTTTEEEEEEE-TTS-EE
T ss_pred HHHHHHHHHcCCCHHHHHHhCCCcccCcHHHHHHHHHhccccHHHHHHCCCcEEcCCCCcccccCCeEEEEEEcCCCCEE
Confidence 3599999999999999999987411 10 03589999998 889999
Q ss_pred EEEeecC----CCcccccC-----CCCCccccccc
Q 005204 264 NCKYRDF----NKKFWQEK-----DTEKVFYGLDD 289 (709)
Q Consensus 264 ~~~~R~~----~kk~~~~~-----~~~~~lyg~~~ 289 (709)
+|.+|.+ .+||.+++ .++..|||++.
T Consensus 92 gF~gR~l~~~~~pKYlNs~et~if~K~~~Lyg~~~ 126 (128)
T PF08275_consen 92 GFGGRRLDDENPPKYLNSPETPIFKKSRILYGLDQ 126 (128)
T ss_dssp EEEEEESSSSSS-SEEE---BTTB-GGG-EETHHH
T ss_pred EEecccCCCCCCCceECCCCCccccCCceecCccc
Confidence 9999999 35898866 56788998764
No 92
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=98.17 E-value=1.4e-05 Score=84.30 Aligned_cols=163 Identities=20% Similarity=0.224 Sum_probs=97.4
Q ss_pred CCcccccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCC
Q 005204 446 GDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 523 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~ 523 (709)
....-++||...||++++ +..|.++.|.|+||+|||.|++.++...-. -...++|+..|-. .+ ..|+.......
T Consensus 88 ~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~g-ge~~~l~IDs~s~-~~-~~~~~~ia~~~- 163 (326)
T KOG1433|consen 88 SELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTCGG-GEGKVLYIDTEST-FR-LERLTEIAGRS- 163 (326)
T ss_pred ccceeeccchhhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHhccC-CcceEEEEecchh-cc-cchhhhhhhhh-
Confidence 455678999999999998 999999999999999999999777665422 2578999998864 11 11211111110
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCH-
Q 005204 524 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTE- 602 (709)
Q Consensus 524 ~~~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~- 602 (709)
+ +...+ ..+.+.-. ..+ ....+... ...+.....+....++++|+...+......+..+
T Consensus 164 ------~-----~~~~~---~~~~l~~~-~~~----~~~~~l~~-~~~a~~~~~~~~~~l~~vds~ta~~~~~~~g~~~~ 223 (326)
T KOG1433|consen 164 ------G-----LRGRD---TLSNLMLA-RAY----NLDHQLQL-IQEAEIMINQSRVKLLIVDSATALYRTTFKGRGEL 223 (326)
T ss_pred ------h-----hhhHH---HHHHHHHH-HHH----hhHHHHHH-HHHHHHHhhccceeEEEecccccccccccccccch
Confidence 0 00000 10111000 000 00011111 1122222334467899999998887654222111
Q ss_pred ---HHHHHHHHHHHHHHHHHhCcEEEEEec-cCC
Q 005204 603 ---TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQ 632 (709)
Q Consensus 603 ---~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk 632 (709)
..-....++.|++++.+++++||+.+| .+.
T Consensus 224 ~a~~~~~~~~~~~l~~la~~~g~~vvitn~v~~~ 257 (326)
T KOG1433|consen 224 SARQMLLAKFLRSLKKLADEFGVAVVITNQVTAQ 257 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceEEEecccccc
Confidence 123456888999999999999999999 443
No 93
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.15 E-value=1.2e-05 Score=77.90 Aligned_cols=43 Identities=26% Similarity=0.384 Sum_probs=33.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHH-HHHHHH
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR-EHARKL 515 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~-~~~~Rl 515 (709)
+++|.|++|+|||+||.+++.. . +.+++|++.+.+.. ++.+|+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~-~~~~~y~at~~~~d~em~~rI 44 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---L-GGPVTYIATAEAFDDEMAERI 44 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---c-CCCeEEEEccCcCCHHHHHHH
Confidence 5789999999999999999865 3 78999998886632 344443
No 94
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.07 E-value=4.3e-05 Score=70.28 Aligned_cols=117 Identities=24% Similarity=0.322 Sum_probs=77.5
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhc----CCeEEEEECCC--CHHHHHHHHHHHHcCCCccccccCCCCCCCCHH
Q 005204 466 PGELTIVTGVPNSGKSEWIDALICNINEHA----GWKFVLCSMEN--KVREHARKLLEKHIKKPFFEANYGGSAERMTVE 539 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~----g~~Vly~SlE~--~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e 539 (709)
.+.+++|.|+||+|||+++.+++....... ..+++|+.... +...+...+...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------------------- 61 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEA--------------------- 61 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHH---------------------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHH---------------------
Confidence 467899999999999999999999887531 46677776532 233443333222
Q ss_pred HHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005204 540 EFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 619 (709)
Q Consensus 540 ~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~ 619 (709)
+.... ....+.+++.+.+.+...+.+..+||||.+..+. -.+++..|+.++.+
T Consensus 62 --------l~~~~-------~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~------------~~~~l~~l~~l~~~ 114 (131)
T PF13401_consen 62 --------LGLPL-------KSRQTSDELRSLLIDALDRRRVVLLVIDEADHLF------------SDEFLEFLRSLLNE 114 (131)
T ss_dssp --------HT-SS-------SSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHH------------THHHHHHHHHHTCS
T ss_pred --------hCccc-------cccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcC------------CHHHHHHHHHHHhC
Confidence 11100 1134567777777777777777899999766542 15678888999999
Q ss_pred hCcEEEEEecc
Q 005204 620 HACHVWFVAHP 630 (709)
Q Consensus 620 ~~i~Vi~v~h~ 630 (709)
.++.||++.++
T Consensus 115 ~~~~vvl~G~~ 125 (131)
T PF13401_consen 115 SNIKVVLVGTP 125 (131)
T ss_dssp CBEEEEEEESS
T ss_pred CCCeEEEEECh
Confidence 99999999985
No 95
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=97.97 E-value=0.00013 Score=71.16 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=97.8
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHh-----cCCeEEEEECCCC--HHHHHHHHHHHHcCCCccccccCCCCCCC
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEH-----AGWKFVLCSMENK--VREHARKLLEKHIKKPFFEANYGGSAERM 536 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~-----~g~~Vly~SlE~~--~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l 536 (709)
...|.++.|.||.|+|||.++.|++.+...- -++-|+++.++-. ..++++-+...+...+..+.-- ..-.
T Consensus 35 ~daG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~---~~c~ 111 (293)
T KOG2859|consen 35 ADAGTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIA---AKCP 111 (293)
T ss_pred cccCcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhhhhhhh---hcCC
Confidence 4579999999999999999999999988753 2578999999855 3333322222222221111100 0123
Q ss_pred CHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHH---HHHH-HhcCCcEEEEccCcccccCCCC-----CCCHHHHHH
Q 005204 537 TVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLA---KAAV-LRHGVRGLVIDPYNELDHQRPV-----SQTETEYVS 607 (709)
Q Consensus 537 ~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i---~~~~-~~~~~~lIVID~~~~l~~~~~~-----~~~~~~~~~ 607 (709)
+++..+++...-..++.+++|... +++...+ +..+ ...++-++++|++....-.+.. .......+.
T Consensus 112 te~~~eEi~~~Cm~Rf~~v~C~~s-----~~ll~sL~~l~y~i~~~p~~cll~~DslsaFyW~Dr~~~le~~n~~~~~lr 186 (293)
T KOG2859|consen 112 TEEQLEEIAGECMSRFRFVNCFAS-----DDLLTSLIDLRYAIINDPGICLLAMDSLSAFYWLDRPKILEKRNSMYRHLR 186 (293)
T ss_pred cHhHHHHHHHHHHhhEEEEEeecc-----HHHHHHHHHHHHHHhcCCceeEEeecchhhheeecccchHhhhhhHHHHHH
Confidence 444446666555567888877421 2333322 3333 3445889999988765432211 111223456
Q ss_pred HHHHHHHHHHHHhCcEEEEEec
Q 005204 608 QMLTMVKRFAQHHACHVWFVAH 629 (709)
Q Consensus 608 ~i~~~Lk~lA~~~~i~Vi~v~h 629 (709)
.+.+.|+++.+.+-..++.+.+
T Consensus 187 ~~~q~LeKL~~d~~lv~~aT~~ 208 (293)
T KOG2859|consen 187 LLQQRLEKLCKDAILVGMATVE 208 (293)
T ss_pred HHHHHHHHHHhhheeeeeeehh
Confidence 7889999999999888888877
No 96
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.94 E-value=0.00023 Score=71.50 Aligned_cols=175 Identities=18% Similarity=0.223 Sum_probs=92.7
Q ss_pred chhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC---CCHHHHHHHHHHHHcCCCccccccC
Q 005204 455 WRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKPFFEANYG 530 (709)
Q Consensus 455 ~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE---~~~~~~~~Rl~~~~~g~~~~~i~~g 530 (709)
...|+.+-- +.+||++.|.||+|||||||+.-++. +..-.+..|.+...+ ++..+ ...+-....|.-++...-
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~-ld~pt~G~v~i~g~d~~~l~~~~-~~~~R~~~iGfvFQ~~nL- 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG-LDKPTSGEVLINGKDLTKLSEKE-LAKLRRKKIGFVFQNFNL- 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc-ccCCCCceEEECCEEcCcCCHHH-HHHHHHHhEEEECccCCC-
Confidence 445655544 99999999999999999999765543 322235555555422 33322 223333444443332110
Q ss_pred CCCCCCCHHHH---------------HHHHHHHhcCcce---EEecCCCCCCHH--HHHHHHHHHHHhcCCcEEEEccCc
Q 005204 531 GSAERMTVEEF---------------EQGKAWLSNTFSL---IRCENDSLPSIK--WVLDLAKAAVLRHGVRGLVIDPYN 590 (709)
Q Consensus 531 ~~~~~l~~e~~---------------~~~~~~l~~~~~~---i~~~~~~~~~i~--~i~~~i~~~~~~~~~~lIVID~~~ 590 (709)
.+.++..|- .+....+.+.+-+ ....+....+-. +=++.++.+ -.+|++|+-|-
T Consensus 95 --l~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL--~~~P~iilADE-- 168 (226)
T COG1136 95 --LPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARAL--INNPKIILADE-- 168 (226)
T ss_pred --CCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHH--hcCCCeEEeeC--
Confidence 012232221 1111111111000 000111122222 222333333 36789999992
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEe
Q 005204 591 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 663 (709)
Q Consensus 591 ~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~ 663 (709)
+. +.-+.+.-.+++.-|++++++.|.+||+|+|... +...||.++.+.
T Consensus 169 -----PT-gnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~-------------------lA~~~dr~i~l~ 216 (226)
T COG1136 169 -----PT-GNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE-------------------LAKYADRVIELK 216 (226)
T ss_pred -----cc-ccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-------------------HHHhCCEEEEEe
Confidence 21 2223344567899999999999999999999422 345677777775
No 97
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.92 E-value=0.00017 Score=73.88 Aligned_cols=173 Identities=21% Similarity=0.223 Sum_probs=96.6
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC---CCCHHHHHHHHHH--HHcCCCc----cc
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM---ENKVREHARKLLE--KHIKKPF----FE 526 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl---E~~~~~~~~Rl~~--~~~g~~~----~~ 526 (709)
-|+++-- +++|+++.|.||.|+||||++.-++--+.-. ...|.+-.- +++..++++++.- +....++ .+
T Consensus 17 il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~-~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d 95 (258)
T COG1120 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK-SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYE 95 (258)
T ss_pred EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEee
Confidence 3455544 9999999999999999999988776654433 334433321 2455555555421 1111110 00
Q ss_pred -cccC-----CCCCCCCHHHHHHHHHHHh--------cCcceEEecCCCCCCHH--HHHHHHHHHHHhcCCcEEEEccCc
Q 005204 527 -ANYG-----GSAERMTVEEFEQGKAWLS--------NTFSLIRCENDSLPSIK--WVLDLAKAAVLRHGVRGLVIDPYN 590 (709)
Q Consensus 527 -i~~g-----~~~~~l~~e~~~~~~~~l~--------~~~~~i~~~~~~~~~i~--~i~~~i~~~~~~~~~~lIVID~~~ 590 (709)
+..| .+....+.++.+.+...+. ++. + ...+=. +....++. -..+++++++|.=+
T Consensus 96 ~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~--~-----~~LSGGerQrv~iArA--LaQ~~~iLLLDEPT 166 (258)
T COG1120 96 LVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP--V-----DELSGGERQRVLIARA--LAQETPILLLDEPT 166 (258)
T ss_pred hHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc--c-----cccChhHHHHHHHHHH--HhcCCCEEEeCCCc
Confidence 0011 1223445555444432222 222 1 111112 22222222 23578999999322
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 591 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 591 ~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
+.. +-..+-++++-+++++++.|.+||++.| ..- ....||.++.|...+
T Consensus 167 -------s~L-Di~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-------------------A~ryad~~i~lk~G~ 216 (258)
T COG1120 167 -------SHL-DIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-------------------AARYADHLILLKDGK 216 (258)
T ss_pred -------ccc-CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-------------------HHHhCCEEEEEECCe
Confidence 222 2344568999999999999999999999 321 246788888887644
No 98
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.91 E-value=0.00014 Score=70.23 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=87.3
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC---HHHHHHHHHHHHcCCC-------ccc
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK---VREHARKLLEKHIKKP-------FFE 526 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~---~~~~~~Rl~~~~~g~~-------~~~ 526 (709)
+|++-- +++|.+|.|.||.|+||||++.-++. +.......|.+=..|+. ..++++++ +.+.... ..+
T Consensus 17 l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sR-L~~~d~G~i~i~g~~~~~~~s~~LAk~l-SILkQ~N~i~~rlTV~d 94 (252)
T COG4604 17 LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSR-LLKKDSGEITIDGLELTSTPSKELAKKL-SILKQENHINSRLTVRD 94 (252)
T ss_pred eccceeeecCCceeEEECCCCccHHHHHHHHHH-hccccCceEEEeeeecccCChHHHHHHH-HHHHhhchhhheeEHHH
Confidence 455444 99999999999999999998765444 44333566666666654 45566554 2221111 111
Q ss_pred c----ccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHH------HHHHHHHHHhcCCcEEEEccCcccccCC
Q 005204 527 A----NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWV------LDLAKAAVLRHGVRGLVIDPYNELDHQR 596 (709)
Q Consensus 527 i----~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i------~~~i~~~~~~~~~~lIVID~~~~l~~~~ 596 (709)
+ |+..+.++++.+++..+.+.+.- +.+ ++-....++++ ++.+ .++...+.+.|++|-=+
T Consensus 95 Lv~FGRfPYSqGRlt~eD~~~I~~aiey-l~L---~~l~dryLd~LSGGQrQRAfI-AMVlaQdTdyvlLDEPL------ 163 (252)
T COG4604 95 LVGFGRFPYSQGRLTKEDRRIINEAIEY-LHL---EDLSDRYLDELSGGQRQRAFI-AMVLAQDTDYVLLDEPL------ 163 (252)
T ss_pred HhhcCCCcccCCCCchHHHHHHHHHHHH-hcc---cchHHHhHHhcccchhhhhhh-heeeeccCcEEEecCcc------
Confidence 1 11134568888877655333321 000 00000001111 1111 11223567888888211
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec
Q 005204 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 629 (709)
Q Consensus 597 ~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h 629 (709)
... +-.--.++|+-|+++|.++|-+|++|-|
T Consensus 164 -NNL-DmkHsv~iMk~Lrrla~el~KtiviVlH 194 (252)
T COG4604 164 -NNL-DMKHSVQIMKILRRLADELGKTIVVVLH 194 (252)
T ss_pred -ccc-chHHHHHHHHHHHHHHHHhCCeEEEEEe
Confidence 111 2223357999999999999999999999
No 99
>PF13479 AAA_24: AAA domain
Probab=97.90 E-value=9.8e-05 Score=74.47 Aligned_cols=147 Identities=16% Similarity=0.121 Sum_probs=83.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHHHHH
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 548 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l 548 (709)
-++|+|+||+|||+|+..+ .+++++++|.....+... .+.+...
T Consensus 5 ~~lIyG~~G~GKTt~a~~~---------~k~l~id~E~g~~~~~~~-----~~~~~i~---------------------- 48 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL---------PKPLFIDTENGSDSLKFL-----DDGDVIP---------------------- 48 (213)
T ss_pred EEEEECCCCCCHHHHHHhC---------CCeEEEEeCCCccchhhh-----cCCCeeC----------------------
Confidence 5789999999999998876 578999999763321100 0111100
Q ss_pred hcCcceEEecCCCCCCHHHHHHHHHHHHH-hcCCcEEEEccCcccccC-------------CC-CC---CCHHHHHHH-H
Q 005204 549 SNTFSLIRCENDSLPSIKWVLDLAKAAVL-RHGVRGLVIDPYNELDHQ-------------RP-VS---QTETEYVSQ-M 609 (709)
Q Consensus 549 ~~~~~~i~~~~~~~~~i~~i~~~i~~~~~-~~~~~lIVID~~~~l~~~-------------~~-~~---~~~~~~~~~-i 609 (709)
-.+++++.+.+..+.. ..+.+.||||++..+... .. .. ...+..+.+ +
T Consensus 49 -------------i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~ 115 (213)
T PF13479_consen 49 -------------ITSWEDFLEALDELEEDEADYDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEF 115 (213)
T ss_pred -------------cCCHHHHHHHHHHHHhccCCCCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHH
Confidence 1145555555544322 356788888877754210 00 01 223444444 4
Q ss_pred HHHHHHHHHHhCcEEEEEeccCCCCC-CCC----CCCccccccCchhhhcccceEEEEeeC
Q 005204 610 LTMVKRFAQHHACHVWFVAHPRQLHN-WVG----EPPNLYDISGSAHFINKCDNGIVIHRN 665 (709)
Q Consensus 610 ~~~Lk~lA~~~~i~Vi~v~h~rk~~~-~~~----~~p~l~di~GS~~i~~~AD~vl~l~r~ 665 (709)
.+.++.+....+++||+++|...... ..+ -.|.+.. +-...+...+|.|..+...
T Consensus 116 ~~~i~~l~~~~~~~VI~tah~~~~~~~~~~~~~~~~~~l~~-k~~~~l~~~~D~V~~l~~~ 175 (213)
T PF13479_consen 116 MRFIDKLLNALGKNVIFTAHAKEEEDEDGGKYTRYKPKLGK-KVRNELPGWFDVVGRLRVE 175 (213)
T ss_pred HHHHHHHHHHCCCcEEEEEEEEEEEcCCCCceeEEeeccCh-hHHhhhhecccEEEEEEEE
Confidence 44444466679999999999332221 111 1233322 3345689999999777643
No 100
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.90 E-value=0.00017 Score=73.51 Aligned_cols=174 Identities=17% Similarity=0.155 Sum_probs=94.1
Q ss_pred hhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhc---------------CCeEEEEEC----C----CCHHHH
Q 005204 456 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHA---------------GWKFVLCSM----E----NKVREH 511 (709)
Q Consensus 456 ~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~---------------g~~Vly~Sl----E----~~~~~~ 511 (709)
+.|+++.- +.+|+++.|.||.|+|||||+.-++=-+--.. +.+|.|+.= + .++.+
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d- 96 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKD- 96 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHH-
Confidence 35666655 99999999999999999999776543221111 124555521 1 11222
Q ss_pred HHHHHHHHcCCCccccccCCCCCCCCHHHHHHHHHHHhcC-cceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCc
Q 005204 512 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT-FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 590 (709)
Q Consensus 512 ~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~-~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~ 590 (709)
+... |.- ....+...++..+.+++.+.|..- +.-++...-+..+=.+....+-.-+-..+++++++|-=.
T Consensus 97 ---~V~~--g~~----~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~ 167 (254)
T COG1121 97 ---VVLL--GRY----GKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPF 167 (254)
T ss_pred ---HHHc--cCc----ccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCc
Confidence 2211 110 011122345555555554444321 111111111222323322222111234679999999211
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 591 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 591 ~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
.+.+ .....++++-|+++.++ |++|++++|.=. .....+|.|+.|.+.-
T Consensus 168 -------~gvD-~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~------------------~v~~~~D~vi~Ln~~~ 216 (254)
T COG1121 168 -------TGVD-VAGQKEIYDLLKELRQE-GKTVLMVTHDLG------------------LVMAYFDRVICLNRHL 216 (254)
T ss_pred -------ccCC-HHHHHHHHHHHHHHHHC-CCEEEEEeCCcH------------------HhHhhCCEEEEEcCee
Confidence 2222 23346788889999999 999999999311 1457889999998754
No 101
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.89 E-value=0.00036 Score=69.31 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=33.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
++++.|++|+||||.+..+|.+...+ |.+|+.+|++--
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~ 40 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTY 40 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCC
Confidence 78999999999999999999999988 999999999843
No 102
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.89 E-value=0.00031 Score=66.24 Aligned_cols=165 Identities=15% Similarity=0.132 Sum_probs=90.7
Q ss_pred ccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC----CCHHHHHHHHHHHHcCCCc---
Q 005204 453 TGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME----NKVREHARKLLEKHIKKPF--- 524 (709)
Q Consensus 453 tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE----~~~~~~~~Rl~~~~~g~~~--- 524 (709)
++-+-||.+-- +++||...|+||+|+|||+|+.++|.-..- .--++||-.| ..++.+..++......-.+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp--~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC--CCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 34455666644 999999999999999999999988775554 2345666655 3466666665433222111
Q ss_pred --c-------ccccCCCCCCCCHHHHHHHHHHHhcCcceEEecCCC-CCCHHHHHHHHHHHHHhcCCcEEEEccCccccc
Q 005204 525 --F-------EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDS-LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH 594 (709)
Q Consensus 525 --~-------~i~~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~-~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~ 594 (709)
. .++.. +..+.........+.-.-.++...... ...-.+.++.++.+ ++.++++.+|..+..+.
T Consensus 92 tVeDNlifP~~~r~r----r~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~L--q~~P~ILLLDE~TsALD 165 (223)
T COG4619 92 TVEDNLIFPWQIRNR----RPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNL--QFMPKILLLDEITSALD 165 (223)
T ss_pred chhhccccchHHhcc----CCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHh--hcCCceEEecCchhhcC
Confidence 0 11111 222222222222221111222111011 11123455555554 57899999997665543
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCC
Q 005204 595 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQL 633 (709)
Q Consensus 595 ~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~ 633 (709)
. +..+.+.+|+ .++..+.+++|+-+.|.+..
T Consensus 166 ~-----~nkr~ie~mi---~~~v~~q~vAv~WiTHd~dq 196 (223)
T COG4619 166 E-----SNKRNIEEMI---HRYVREQNVAVLWITHDKDQ 196 (223)
T ss_pred h-----hhHHHHHHHH---HHHhhhhceEEEEEecChHH
Confidence 2 2233444444 34555889999999995433
No 103
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.84 E-value=0.0005 Score=66.76 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=34.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
++++.|+||+|||+++..++..++.+ |.+|++++.+.-
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK-GKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCC
Confidence 68899999999999999999998887 999999998854
No 104
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.79 E-value=0.00012 Score=67.13 Aligned_cols=43 Identities=28% Similarity=0.448 Sum_probs=35.7
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHH
Q 005204 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 510 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~ 510 (709)
+..++|.|+||+|||+++..++..+... +..++|++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~~~~~ 44 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGEDILEE 44 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEECCEEcccc
Confidence 6789999999999999999998887664 457999998876543
No 105
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00028 Score=75.86 Aligned_cols=41 Identities=10% Similarity=0.106 Sum_probs=37.2
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
+.+|.+++|.|++|+||||++..++..+..+ |.+|++++.+
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~~-g~~V~lItaD 243 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQ-NRTVGFITTD 243 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCC
Confidence 5678999999999999999999999887766 9999999987
No 106
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.75 E-value=0.00028 Score=73.53 Aligned_cols=61 Identities=18% Similarity=0.149 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEe
Q 005204 562 LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 628 (709)
Q Consensus 562 ~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~ 628 (709)
..+...+...+..+.+..+++++|||.+..++.++ ...+.+++..||.|+.++++++|++.
T Consensus 127 ~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs------~~~qr~~Ln~LK~L~NeL~ipiV~vG 187 (302)
T PF05621_consen 127 RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS------YRKQREFLNALKFLGNELQIPIVGVG 187 (302)
T ss_pred CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc------HHHHHHHHHHHHHHhhccCCCeEEec
Confidence 34456666777777888999999999998887643 33467899999999999999999875
No 107
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.75 E-value=0.00048 Score=69.34 Aligned_cols=153 Identities=19% Similarity=0.211 Sum_probs=82.5
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHHHH
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAW 547 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~ 547 (709)
.+++|+|+||+|||++|.+++ .+.++++.+.+...+ .|.....
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~--------~~~~~~~~d~~~~~l--------~g~~~~~--------------------- 55 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP--------GKTLVLSFDMSSKVL--------IGDENVD--------------------- 55 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC--------CCCEEEeccccchhc--------cCCCCCc---------------------
Confidence 479999999999999988762 357788888764432 1111100
Q ss_pred HhcCcceEEecCCCCCCHHHHHHHHHHHH-HhcCCcEEEEccCccccc------CC--CCC---CCHHHHHH-HHHHHHH
Q 005204 548 LSNTFSLIRCENDSLPSIKWVLDLAKAAV-LRHGVRGLVIDPYNELDH------QR--PVS---QTETEYVS-QMLTMVK 614 (709)
Q Consensus 548 l~~~~~~i~~~~~~~~~i~~i~~~i~~~~-~~~~~~lIVID~~~~l~~------~~--~~~---~~~~~~~~-~i~~~Lk 614 (709)
+++. +...+.+.+.+.+..+. ...+++.||||++..+.. .. ..+ ...+..+. .++..|+
T Consensus 56 ------v~~~--d~~~~~~~~~d~l~~~~~~~~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~ 127 (220)
T TIGR01618 56 ------IADH--DDMPPIQAMVEFYVMQNIQAVKYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLT 127 (220)
T ss_pred ------eeec--CCCCCHHHHHHHHHHHHhccccCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHH
Confidence 0100 11222344444443322 134578899998876643 11 111 11222232 3555666
Q ss_pred HHHHHhCcEEEEEecc--CCCCCCCCCCCccc--cccC--chhhhcccceEEEEeeCC
Q 005204 615 RFAQHHACHVWFVAHP--RQLHNWVGEPPNLY--DISG--SAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 615 ~lA~~~~i~Vi~v~h~--rk~~~~~~~~p~l~--di~G--S~~i~~~AD~vl~l~r~~ 666 (709)
.|. +.+..||+++|. +......+...+.. ++++ ...+...+|+|.-+.-+.
T Consensus 128 ~L~-~~g~nII~tAhe~~~~~~de~G~~~~r~~P~i~~K~~n~l~G~~DvV~rl~i~~ 184 (220)
T TIGR01618 128 VLK-ESNKNIYATAWELTNQSSGESGQIYNRYQPDIREKVLNAFLGLTDVVGRIVLNG 184 (220)
T ss_pred HHH-hCCCcEEEEEeeccccccCCCCCCcceechhhhhhHHHhhcccccEEEEEEEcc
Confidence 664 499999999993 33322112211111 2332 123777889999887443
No 108
>cd00188 TOPRIM Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from bacterial and archaea, and bacterial DNA repair proteins of the RecR/M family. This domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases and in strand joining in topoisomerases and, as a general acid in strand cleavage by topisomerases and nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=97.73 E-value=0.00011 Score=60.99 Aligned_cols=68 Identities=32% Similarity=0.430 Sum_probs=47.7
Q ss_pred eEEEEcChhhHHHHHHhCCc--eEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcC-cCEEEEEecCChhhHHHH
Q 005204 295 DIIIVEGEMDKLSMEEAGFL--NCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ-ASRIILATDGDPPGQALA 371 (709)
Q Consensus 295 ~viI~EG~~DaLsl~q~g~~--~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~-~~~Ivi~~DnD~aG~~aa 371 (709)
.++||||+.|++++.+++.. .++++ .|.... +. ...+..+.+ ..+|++++|+|.+|+..+
T Consensus 2 ~viivEg~~d~~~l~~~~~~~~~~~~~-~G~~~~------~~----------~~~~~~~~~~~~~v~i~~D~D~~g~~~~ 64 (83)
T cd00188 2 KLIIVEGPSDALALAQAGGYGGAVVAL-GGHALN------KT----------RELLKRLLGEAKEVIIATDADREGEAIA 64 (83)
T ss_pred EEEEEecHHHHHHHHHHcCCCEEEEEE-ccEEcH------HH----------HHHHHHHhcCCCEEEEEcCCChhHHHHH
Confidence 68999999999999999873 56664 354431 00 011222323 489999999999999888
Q ss_pred HHHHHHhC
Q 005204 372 EELARRVG 379 (709)
Q Consensus 372 ~~~a~~l~ 379 (709)
..+.+.+.
T Consensus 65 ~~~~~~~~ 72 (83)
T cd00188 65 LRLLELLK 72 (83)
T ss_pred HHHHHHHH
Confidence 77777663
No 109
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.72 E-value=0.00032 Score=74.21 Aligned_cols=177 Identities=18% Similarity=0.187 Sum_probs=94.1
Q ss_pred chhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCH--HHHHHHHHHHHcCCCccccccCC
Q 005204 455 WRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV--REHARKLLEKHIKKPFFEANYGG 531 (709)
Q Consensus 455 ~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~--~~~~~Rl~~~~~g~~~~~i~~g~ 531 (709)
...|+.+-. +.+|+++.|.|++|+||||++.-++--+-. ....|.+...+... .++.+++ +.+...+.
T Consensus 18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p-~~G~i~i~G~~~~~~~~~~~~~i-gy~~~~~~------- 88 (293)
T COG1131 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP-TSGEILVLGYDVVKEPAKVRRRI-GYVPQEPS------- 88 (293)
T ss_pred CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEEcCEeCccCHHHHHhhe-EEEccCCC-------
Confidence 345666655 999999999999999999997755543332 35666666544433 2222221 11111111
Q ss_pred CCCCCCHHHHHHHHHHHh---------------cCcceEE--ecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCccccc
Q 005204 532 SAERMTVEEFEQGKAWLS---------------NTFSLIR--CENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH 594 (709)
Q Consensus 532 ~~~~l~~e~~~~~~~~l~---------------~~~~~i~--~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~ 594 (709)
-...+|..|.-+....+. +.+-+-. ...-...+...-....-..+--.+|+++|+|
T Consensus 89 ~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLD------- 161 (293)
T COG1131 89 LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILD------- 161 (293)
T ss_pred CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEEC-------
Confidence 011344433322211110 1011100 0000112221111111111234679999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 595 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 595 ~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
.+..+.+ .....++.+.|++++++.+.+|++.+|.-. .+++.||.|++|.+-+
T Consensus 162 EPt~GLD-p~~~~~~~~~l~~l~~~g~~tvlissH~l~------------------e~~~~~d~v~il~~G~ 214 (293)
T COG1131 162 EPTSGLD-PESRREIWELLRELAKEGGVTILLSTHILE------------------EAEELCDRVIILNDGK 214 (293)
T ss_pred CCCcCCC-HHHHHHHHHHHHHHHhCCCcEEEEeCCcHH------------------HHHHhCCEEEEEeCCE
Confidence 2223333 344567899999999999999999999321 2456788888887644
No 110
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.72 E-value=0.00014 Score=74.07 Aligned_cols=177 Identities=20% Similarity=0.226 Sum_probs=92.4
Q ss_pred hhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC----CHHHHHHHHHHHHcCCCcc-----
Q 005204 456 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN----KVREHARKLLEKHIKKPFF----- 525 (709)
Q Consensus 456 ~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~----~~~~~~~Rl~~~~~g~~~~----- 525 (709)
+.|+++-- +.+|+.++|.|++|+||||++..++-=+--. ...|.+..... +..++.++ .|.-++
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~-~G~v~~~g~~~~~~~~~~~~~~~-----vG~VfQnpd~q 91 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT-SGEVLVDGLDTSSEKSLLELRQK-----VGLVFQNPDDQ 91 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC-CCEEEECCeeccchhhHHHhhcc-----eEEEEECcccc
Confidence 34545444 9999999999999999999988765433222 34452222221 12222222 222211
Q ss_pred --------ccccCCCCCCCCHHHHHHHHH-HHhc-CcceEEecCCCCCCH--HHHHHHHHHHHHhcCCcEEEEccCcccc
Q 005204 526 --------EANYGGSAERMTVEEFEQGKA-WLSN-TFSLIRCENDSLPSI--KWVLDLAKAAVLRHGVRGLVIDPYNELD 593 (709)
Q Consensus 526 --------~i~~g~~~~~l~~e~~~~~~~-~l~~-~~~~i~~~~~~~~~i--~~i~~~i~~~~~~~~~~lIVID~~~~l~ 593 (709)
++..|-....++.++..+... .+.. .+.-+........+- .+..+.+- +-..+++++|+|-=+
T Consensus 92 ~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~--vLa~~P~iliLDEPt--- 166 (235)
T COG1122 92 LFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAG--VLAMGPEILLLDEPT--- 166 (235)
T ss_pred cccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhH--HHHcCCCEEEEcCCC---
Confidence 112221122345544433322 2211 000000000001111 11112111 234679999999322
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 594 ~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
++. +.....++++.|+++.++.+.+||+++|.-.. +...||.++.+...+
T Consensus 167 ----a~L-D~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~------------------~~~~ad~v~vl~~G~ 216 (235)
T COG1122 167 ----AGL-DPKGRRELLELLKKLKEEGGKTIIIVTHDLEL------------------VLEYADRVVVLDDGK 216 (235)
T ss_pred ----CCC-CHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH------------------HHhhCCEEEEEECCE
Confidence 222 33445788999999999999999999994322 457789999987533
No 111
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.65 E-value=0.00028 Score=68.41 Aligned_cols=122 Identities=15% Similarity=0.204 Sum_probs=68.0
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHHH
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA 546 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~-~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~ 546 (709)
.+++|.|+||+|||+||.+++... +.+++|++...+ .++..+|+.......
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~----~~~~~~iat~~~~~~e~~~ri~~h~~~R------------------------ 53 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS----GLQVLYIATAQPFDDEMAARIAHHRQRR------------------------ 53 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc----CCCcEeCcCCCCChHHHHHHHHHHHhcC------------------------
Confidence 478999999999999999887642 667888887644 344555543221111
Q ss_pred HHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEE
Q 005204 547 WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 626 (709)
Q Consensus 547 ~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~ 626 (709)
...+..+ +...++..+ +... ..+.++|+||++..+....-. .++.......+..|...-++.++++|+
T Consensus 54 --~~~w~t~----E~~~~l~~~---i~~~--~~~~~~VlID~Lt~~~~n~l~-~~~~~~~~~~l~~li~~L~~~~~tvVl 121 (170)
T PRK05800 54 --PAHWQTV----EEPLDLAEL---LRAD--AAPGRCVLVDCLTTWVTNLLF-EEGEEAIAAEIDALLAALQQLPAKIIL 121 (170)
T ss_pred --CCCCeEe----cccccHHHH---HHhh--cCCCCEEEehhHHHHHHHHhc-ccchHHHHHHHHHHHHHHHcCCCCEEE
Confidence 1122222 112223332 2221 234679999988877542100 011122233344444444458889999
Q ss_pred Eec
Q 005204 627 VAH 629 (709)
Q Consensus 627 v~h 629 (709)
|+.
T Consensus 122 Vs~ 124 (170)
T PRK05800 122 VTN 124 (170)
T ss_pred EEc
Confidence 887
No 112
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.63 E-value=0.0011 Score=65.44 Aligned_cols=174 Identities=18% Similarity=0.188 Sum_probs=92.8
Q ss_pred hhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCcccccc-----
Q 005204 456 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANY----- 529 (709)
Q Consensus 456 ~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~----- 529 (709)
..|+.+-- +.+|++++|.||+|+|||||+.- ++.......--+++..+......-.+.+....|+-++...-
T Consensus 16 ~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRc--lN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlT 93 (240)
T COG1126 16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRC--LNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLT 93 (240)
T ss_pred EEecCcceeEcCCCEEEEECCCCCCHHHHHHH--HHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccch
Confidence 34555444 99999999999999999999873 33333222223444443211110112223334444332110
Q ss_pred -------C-CCCCCCCHHHH-HHHHHHHhc-----CcceEEecCCCCCC--HHHHHHHHHHHHHhcCCcEEEEccCcccc
Q 005204 530 -------G-GSAERMTVEEF-EQGKAWLSN-----TFSLIRCENDSLPS--IKWVLDLAKAAVLRHGVRGLVIDPYNELD 593 (709)
Q Consensus 530 -------g-~~~~~l~~e~~-~~~~~~l~~-----~~~~i~~~~~~~~~--i~~i~~~i~~~~~~~~~~lIVID~~~~l~ 593 (709)
+ -....++.++. +.+.+.|.. +...+ ....+ -.+=.+.++.+ ..+++++..|--+.
T Consensus 94 vleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~y----P~qLSGGQqQRVAIARAL--aM~P~vmLFDEPTS-- 165 (240)
T COG1126 94 VLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAY----PAQLSGGQQQRVAIARAL--AMDPKVMLFDEPTS-- 165 (240)
T ss_pred HHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhC----ccccCcHHHHHHHHHHHH--cCCCCEEeecCCcc--
Confidence 0 00012333333 334444432 11111 22222 12222333333 36789999993322
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeC
Q 005204 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665 (709)
Q Consensus 594 ~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~ 665 (709)
.-+.+.+.+++.-++.+|+ .|.++++|+| -+= ....||.|+++..-
T Consensus 166 ------ALDPElv~EVL~vm~~LA~-eGmTMivVTHEM~F-------------------Ar~VadrviFmd~G 212 (240)
T COG1126 166 ------ALDPELVGEVLDVMKDLAE-EGMTMIIVTHEMGF-------------------AREVADRVIFMDQG 212 (240)
T ss_pred ------cCCHHHHHHHHHHHHHHHH-cCCeEEEEechhHH-------------------HHHhhheEEEeeCC
Confidence 2345678889999999997 4699999999 321 24678999998753
No 113
>PRK10867 signal recognition particle protein; Provisional
Probab=97.62 E-value=0.0012 Score=73.09 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=36.0
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
.++++.|++|+||||++..+|..++.+.|.+|++++++.-
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 5999999999999999999999888755899999999853
No 114
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.62 E-value=0.00037 Score=81.07 Aligned_cols=36 Identities=33% Similarity=0.533 Sum_probs=31.8
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINE 493 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~ 493 (709)
|+.+.| +.+|+++.|.|++|+||||++.-++-....
T Consensus 46 L~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~ 82 (613)
T KOG0061|consen 46 LKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNG 82 (613)
T ss_pred eeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccC
Confidence 566777 999999999999999999999988887764
No 115
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00078 Score=73.64 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=36.3
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005204 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
.++.+++|.|++|+||||++.++|.......|.+|++++++.
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 346789999999999999999999987554599999999885
No 116
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.0016 Score=61.75 Aligned_cols=155 Identities=19% Similarity=0.308 Sum_probs=90.3
Q ss_pred hccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHH-------HHHHHHHHcCCCccccccCC---
Q 005204 462 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH-------ARKLLEKHIKKPFFEANYGG--- 531 (709)
Q Consensus 462 l~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~-------~~Rl~~~~~g~~~~~i~~g~--- 531 (709)
+.+.|||+.-|.|.+|+||||++.-++.+++-. ...|.|-.-...+.++ .++++...+|+--+..+.|-
T Consensus 27 F~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~-~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~ 105 (258)
T COG4107 27 FDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD-AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQ 105 (258)
T ss_pred eeecCCcEEEEEecCCCcHHhHHHHHhcccCCC-CCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceee
Confidence 338999999999999999999999888888765 5667777633322222 23444445555333333220
Q ss_pred -CC-CCCCHH-----------HHHHHHHHHhcC-cceEEecCCCCC-----CHHHHHHHHHHHHHhcCCcEEEEccCccc
Q 005204 532 -SA-ERMTVE-----------EFEQGKAWLSNT-FSLIRCENDSLP-----SIKWVLDLAKAAVLRHGVRGLVIDPYNEL 592 (709)
Q Consensus 532 -~~-~~l~~e-----------~~~~~~~~l~~~-~~~i~~~~~~~~-----~i~~i~~~i~~~~~~~~~~lIVID~~~~l 592 (709)
+. ..+.+. --+++.+|+.+- +-.-+. ++.+ .+.+-++.++.++ ..+++|+.|.-
T Consensus 106 VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~Ri--DD~PrtFSGGMqQRLQiARnLV--t~PrLvfMDEP--- 178 (258)
T COG4107 106 VSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRI--DDLPRTFSGGMQQRLQIARNLV--TRPRLVFMDEP--- 178 (258)
T ss_pred eccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccc--cCcccccchHHHHHHHHHHHhc--cCCceEEecCC---
Confidence 00 111111 113456787651 111111 1111 1233333333333 46899999921
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec
Q 005204 593 DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 629 (709)
Q Consensus 593 ~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h 629 (709)
. +.-+-..+..++.-|+.+..+++.++++|.|
T Consensus 179 ----T-GGLDVSVQARLLDllrgLv~~l~la~viVTH 210 (258)
T COG4107 179 ----T-GGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210 (258)
T ss_pred ----C-CCcchhhHHHHHHHHHHHHHhcCceEEEEec
Confidence 1 1223334567888999999999999999999
No 117
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.56 E-value=0.0017 Score=72.02 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=35.5
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
.++++.|++|+||||++..+|..+..+.|.+|++++++.-
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 5999999999999999999999986434999999999954
No 118
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.002 Score=69.86 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=49.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcC-CeEEEEECCCC---HHHHHHHHHHHHcCCCccccc
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-WKFVLCSMENK---VREHARKLLEKHIKKPFFEAN 528 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g-~~Vly~SlE~~---~~~~~~Rl~~~~~g~~~~~i~ 528 (709)
+..|++++|.|++|+||||++..|+..++..+| .+|++++.+.- ..+.. +.++...|++.....
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL-~~~a~~~gv~~~~~~ 201 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQL-RIFGKILGVPVHAVK 201 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHH-HHHHHHcCCceEecC
Confidence 678999999999999999999999999876556 68999998753 22222 445566788776543
No 119
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.001 Score=71.82 Aligned_cols=39 Identities=8% Similarity=0.111 Sum_probs=34.9
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005204 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
+..+.|.|++|+||||++..||..+..+ |.+|++++.+-
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~-GkkVglI~aDt 279 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDH 279 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHc-CCcEEEEecCC
Confidence 3589999999999999999999988765 99999999873
No 120
>PRK14974 cell division protein FtsY; Provisional
Probab=97.53 E-value=0.0022 Score=68.90 Aligned_cols=39 Identities=21% Similarity=0.412 Sum_probs=34.1
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005204 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
+.++++.|+||+||||.+..+|..+... |.+|++++.+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~~V~li~~Dt 178 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKN-GFSVVIAAGDT 178 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCc
Confidence 4699999999999999999999877654 89999998773
No 121
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.52 E-value=0.0034 Score=65.71 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=35.7
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005204 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
++.++++.|++|+||||.+..+|..++.. |.+|+.++.+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~-g~~V~li~~D~ 110 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ-GKSVLLAAGDT 110 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeCCC
Confidence 45688899999999999999999988766 99999999885
No 122
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.00047 Score=70.73 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=42.8
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|--+ .+.+ ......+.+.|++++++.+.+||+++|.... +...||
T Consensus 160 ~~~p~llllDEPt-------~~LD-~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~------------------~~~~~d 213 (241)
T cd03256 160 MQQPKLILADEPV-------ASLD-PASSRQVMDLLKRINREEGITVIVSLHQVDL------------------AREYAD 213 (241)
T ss_pred hcCCCEEEEeCcc-------ccCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCC
Confidence 3578999999322 2222 3345678888888888889999999994221 456789
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 214 ~v~~l~~ 220 (241)
T cd03256 214 RIVGLKD 220 (241)
T ss_pred EEEEEEC
Confidence 9888863
No 123
>PF13173 AAA_14: AAA domain
Probab=97.52 E-value=0.00076 Score=62.12 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=35.1
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHH
Q 005204 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 509 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~ 509 (709)
+.+++|.|+.|+||||++.|++.... ...+++|++++....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPRD 42 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHHH
Confidence 46899999999999999999998876 267899999987544
No 124
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=0.0015 Score=69.18 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=42.8
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|.-+ .+. +......+.+.|+.++++.|.+||+++|.-.. +...||
T Consensus 161 ~~~P~llllDEPt-------~~L-D~~~~~~l~~~L~~l~~~~g~tviiitHd~~~------------------~~~~~d 214 (290)
T PRK13634 161 AMEPEVLVLDEPT-------AGL-DPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED------------------AARYAD 214 (290)
T ss_pred HcCCCEEEEECCc-------ccC-CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCC
Confidence 3579999999332 222 23445678888899998899999999994221 345678
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 215 rv~~l~~ 221 (290)
T PRK13634 215 QIVVMHK 221 (290)
T ss_pred EEEEEEC
Confidence 8777753
No 125
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.43 E-value=0.0013 Score=73.03 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=36.9
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHH-HhcCCeEEEEECCC
Q 005204 465 LPGELTIVTGVPNSGKSEWIDALICNIN-EHAGWKFVLCSMEN 506 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a-~~~g~~Vly~SlE~ 506 (709)
..|.+++|.|++|+||||++..||..++ ...|.+|++++++.
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4578999999999999999999999988 44479999999875
No 126
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.0027 Score=64.98 Aligned_cols=61 Identities=10% Similarity=0.021 Sum_probs=42.2
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|--. .+.+ ......+++.|++++++.+.+||+++|.... +...||
T Consensus 152 ~~~p~llllDEPt-------~~LD-~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~------------------~~~~~d 205 (235)
T cd03261 152 ALDPELLLYDEPT-------AGLD-PIASGVIDDLIRSLKKELGLTSIMVTHDLDT------------------AFAIAD 205 (235)
T ss_pred hcCCCEEEecCCc-------ccCC-HHHHHHHHHHHHHHHHhcCcEEEEEecCHHH------------------HHHhcC
Confidence 3579999999322 2222 3345677888888888789999999994221 346788
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 206 ~v~~l~~ 212 (235)
T cd03261 206 RIAVLYD 212 (235)
T ss_pred EEEEEEC
Confidence 8888864
No 127
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.41 E-value=0.0032 Score=64.21 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=43.3
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|--+ .+. +......+.+.|++++++.+.+||+++|... .+...||
T Consensus 130 ~~~p~lllLDEPt-------~gL-D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~------------------~~~~~~d 183 (230)
T TIGR01184 130 SIRPKVLLLDEPF-------GAL-DALTRGNLQEELMQIWEEHRVTVLMVTHDVD------------------EALLLSD 183 (230)
T ss_pred HcCCCEEEEcCCC-------cCC-CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHHhcC
Confidence 3578999999322 222 2334567888888888888999999999422 1456788
Q ss_pred eEEEEeeC
Q 005204 658 NGIVIHRN 665 (709)
Q Consensus 658 ~vl~l~r~ 665 (709)
.++.|.+-
T Consensus 184 ~v~~l~~G 191 (230)
T TIGR01184 184 RVVMLTNG 191 (230)
T ss_pred EEEEEeCC
Confidence 88888653
No 128
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.39 E-value=0.0042 Score=62.49 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=42.1
Q ss_pred cCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccce
Q 005204 579 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 658 (709)
Q Consensus 579 ~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~ 658 (709)
.+++++++|.-+. +. +......+.+.|+++.++.+.+||+++|.... +...+|.
T Consensus 145 ~~p~llllDEPt~-------~L-D~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~------------------~~~~~d~ 198 (213)
T TIGR01277 145 RPNPILLLDEPFS-------AL-DPLLREEMLALVKQLCSERQRTLLMVTHHLSD------------------ARAIASQ 198 (213)
T ss_pred cCCCEEEEcCCCc-------cC-CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHhhcCe
Confidence 5789999993221 22 23345678888888888789999999995322 3467888
Q ss_pred EEEEee
Q 005204 659 GIVIHR 664 (709)
Q Consensus 659 vl~l~r 664 (709)
++.|..
T Consensus 199 v~~l~~ 204 (213)
T TIGR01277 199 IAVVSQ 204 (213)
T ss_pred EEEEEC
Confidence 888864
No 129
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.39 E-value=0.002 Score=71.02 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=34.5
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
.++++.|++|+||||.+..+|..+..+ |.+|+.++.+-
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~kV~lV~~D~ 138 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRK-GFKPCLVCADT 138 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEcCcc
Confidence 599999999999999999999987765 99999999874
No 130
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.38 E-value=0.003 Score=61.80 Aligned_cols=153 Identities=20% Similarity=0.200 Sum_probs=79.8
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC---CCHHHHHHHHHHHHcCCCccccccCCCC
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKPFFEANYGGSA 533 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE---~~~~~~~~Rl~~~~~g~~~~~i~~g~~~ 533 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-..-.. ...|.+-.-+ .+......++ +.... -+..
T Consensus 15 l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~-~G~v~~~g~~~~~~~~~~~~~~i-~~~~q----~l~~---- 84 (180)
T cd03214 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDGKDLASLSPKELARKI-AYVPQ----ALEL---- 84 (180)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCcCCHHHHHHHH-hHHHH----HHHH----
Confidence 444433 8999999999999999999987665433222 3445432111 1222222111 10000 0000
Q ss_pred CCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHH--HHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHH
Q 005204 534 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLT 611 (709)
Q Consensus 534 ~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~--i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~ 611 (709)
-.+ .+++.... ...+-.+ -+..++. -..+++++++|.-. .+.+ .+....+.+
T Consensus 85 ~gl--------~~~~~~~~--------~~LS~G~~qrl~lara--l~~~p~llllDEP~-------~~LD-~~~~~~~~~ 138 (180)
T cd03214 85 LGL--------AHLADRPF--------NELSGGERQRVLLARA--LAQEPPILLLDEPT-------SHLD-IAHQIELLE 138 (180)
T ss_pred cCC--------HhHhcCCc--------ccCCHHHHHHHHHHHH--HhcCCCEEEEeCCc-------cCCC-HHHHHHHHH
Confidence 000 01111111 1122222 2222232 23578999999322 1222 233456777
Q ss_pred HHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEee
Q 005204 612 MVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664 (709)
Q Consensus 612 ~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r 664 (709)
.|++++++.+.+||+++|.... +...||.++.+..
T Consensus 139 ~l~~~~~~~~~tiii~sh~~~~------------------~~~~~d~~~~l~~ 173 (180)
T cd03214 139 LLRRLARERGKTVVMVLHDLNL------------------AARYADRVILLKD 173 (180)
T ss_pred HHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEEC
Confidence 7778877778999999995322 3467788888763
No 131
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.38 E-value=0.0021 Score=66.50 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=74.4
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcC-------CeEEEEECCCCHHH-HHHHHHHHHcCCCccccc
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-------WKFVLCSMENKVRE-HARKLLEKHIKKPFFEAN 528 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g-------~~Vly~SlE~~~~~-~~~Rl~~~~~g~~~~~i~ 528 (709)
|+.+-- +.+|+.+.|.|++|+|||||+.-++--..-..| ..+.|+.-+..... +...+.... .. .
T Consensus 20 l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~-~~-----~ 93 (251)
T PRK09544 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFL-RL-----R 93 (251)
T ss_pred EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHH-hc-----c
Confidence 444433 899999999999999999998876543221112 13445443311000 000010000 00 0
Q ss_pred cCCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHH
Q 005204 529 YGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 608 (709)
Q Consensus 529 ~g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~ 608 (709)
. ....+++.++.+.+.-.- +.. ......+-.+....+-..+-..+++++++|.-+ .+.+ ......
T Consensus 94 ~-----~~~~~~~~~~l~~~gl~~-~~~-~~~~~LSgGq~qrv~laral~~~p~lllLDEPt-------~~LD-~~~~~~ 158 (251)
T PRK09544 94 P-----GTKKEDILPALKRVQAGH-LID-APMQKLSGGETQRVLLARALLNRPQLLVLDEPT-------QGVD-VNGQVA 158 (251)
T ss_pred c-----cccHHHHHHHHHHcCChH-HHh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC-------cCCC-HHHHHH
Confidence 0 122233333333321100 000 001122333322211111233578999999322 2222 333456
Q ss_pred HHHHHHHHHHHhCcEEEEEecc
Q 005204 609 MLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 609 i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
+.+.|++++++++.+||+++|.
T Consensus 159 l~~~L~~~~~~~g~tiiivsH~ 180 (251)
T PRK09544 159 LYDLIDQLRRELDCAVLMVSHD 180 (251)
T ss_pred HHHHHHHHHHhcCCEEEEEecC
Confidence 7788888888889999999994
No 132
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.37 E-value=0.001 Score=68.38 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=41.6
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++|--+ .+.+ ......+.+.|++++++.+.+||+++|.... +.+.||
T Consensus 161 ~~~p~llllDEPt-------~~LD-~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~------------------~~~~~d 214 (243)
T TIGR02315 161 AQQPDLILADEPI-------ASLD-PKTSKQVMDYLKRINKEDGITVIINLHQVDL------------------AKKYAD 214 (243)
T ss_pred hcCCCEEEEeCCc-------ccCC-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH------------------HHHhcC
Confidence 3578999999322 2222 2334567777888887778999999995322 346788
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|.+
T Consensus 215 ~v~~l~~ 221 (243)
T TIGR02315 215 RIVGLKA 221 (243)
T ss_pred eEEEEEC
Confidence 8888864
No 133
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.37 E-value=0.0046 Score=62.15 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=42.0
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++|.-+ .+. +......+++.|++++++.+.+||+++|.... +.+.+|
T Consensus 146 ~~~p~llllDEPt-------~~L-D~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~------------------~~~~~d 199 (213)
T cd03301 146 VREPKVFLMDEPL-------SNL-DAKLRVQMRAELKRLQQRLGTTTIYVTHDQVE------------------AMTMAD 199 (213)
T ss_pred hcCCCEEEEcCCc-------ccC-CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH------------------HHHhcC
Confidence 3578999999322 222 23445678888888988889999999994221 346678
Q ss_pred eEEEEe
Q 005204 658 NGIVIH 663 (709)
Q Consensus 658 ~vl~l~ 663 (709)
.++.|.
T Consensus 200 ~i~~l~ 205 (213)
T cd03301 200 RIAVMN 205 (213)
T ss_pred eEEEEE
Confidence 888775
No 134
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.37 E-value=0.0016 Score=68.76 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=29.3
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.|+++-- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5666655 9999999999999999999988776543
No 135
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.37 E-value=0.0043 Score=62.41 Aligned_cols=61 Identities=11% Similarity=0.163 Sum_probs=42.6
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|- +..+.+ ......+++.|++++++.+.+||+++|... .+...||
T Consensus 146 ~~~p~~lllDE-------Pt~~LD-~~~~~~l~~~l~~~~~~~~~tii~~sH~~~------------------~~~~~~d 199 (213)
T cd03259 146 AREPSLLLLDE-------PLSALD-AKLREELREELKELQRELGITTIYVTHDQE------------------EALALAD 199 (213)
T ss_pred hcCCCEEEEcC-------CcccCC-HHHHHHHHHHHHHHHHHcCCEEEEEecCHH------------------HHHHhcC
Confidence 35789999992 222222 344567888888888878999999999522 1456788
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|.+
T Consensus 200 ~v~~l~~ 206 (213)
T cd03259 200 RIAVMNE 206 (213)
T ss_pred EEEEEEC
Confidence 8888863
No 136
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.37 E-value=0.00091 Score=65.35 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=40.8
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|--. .+. +......+.+.|++++++.+.++|+++|.... +...+|
T Consensus 116 ~~~p~llilDEP~-------~~L-D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~------------------~~~~~d 169 (178)
T cd03229 116 AMDPDVLLLDEPT-------SAL-DPITRREVRALLKSLQAQLGITVVLVTHDLDE------------------AARLAD 169 (178)
T ss_pred HCCCCEEEEeCCc-------ccC-CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhcC
Confidence 3578999999221 222 23344577788888888778999999995321 345678
Q ss_pred eEEEEe
Q 005204 658 NGIVIH 663 (709)
Q Consensus 658 ~vl~l~ 663 (709)
.++.+.
T Consensus 170 ~i~~l~ 175 (178)
T cd03229 170 RVVVLR 175 (178)
T ss_pred EEEEEe
Confidence 887775
No 137
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.36 E-value=0.0033 Score=67.66 Aligned_cols=162 Identities=17% Similarity=0.125 Sum_probs=79.8
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC---CHHHHHHHHHHHHcCCCcccc----c
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN---KVREHARKLLEKHIKKPFFEA----N 528 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~---~~~~~~~Rl~~~~~g~~~~~i----~ 528 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++--.-- ....|.|-.-+. +..++.. + ....++-++.. .
T Consensus 30 ~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p-~~G~i~~~g~~l~~~~~~~~~~-~-r~~i~~v~Q~~~~~l~ 106 (327)
T PRK11308 30 ALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP-TGGELYYQGQDLLKADPEAQKL-L-RQKIQIVFQNPYGSLN 106 (327)
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCcEEEECCEEcCcCCHHHHHH-H-hCCEEEEEcCchhhcC
Confidence 4555544 999999999999999999998876543322 234454433222 2222111 0 01111111110 0
Q ss_pred ----------cCC-CCCCCCHHHH-HHHHHHHhcC-c--ceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccc
Q 005204 529 ----------YGG-SAERMTVEEF-EQGKAWLSNT-F--SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 593 (709)
Q Consensus 529 ----------~g~-~~~~l~~e~~-~~~~~~l~~~-~--~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~ 593 (709)
... ....+...+. +++.+.+..- + .... .+....+-.+....+-..+-..+++++|.|.-+.
T Consensus 107 p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts-- 183 (327)
T PRK11308 107 PRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYD-RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVS-- 183 (327)
T ss_pred CccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhc-CCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCc--
Confidence 000 0001222222 2223333220 0 0111 1122333333222222222346789999993322
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 594 ~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
+. +.....++++.|+++.++.+.+||+++|.
T Consensus 184 -----~L-D~~~~~~i~~lL~~l~~~~g~til~iTHd 214 (327)
T PRK11308 184 -----AL-DVSVQAQVLNLMMDLQQELGLSYVFISHD 214 (327)
T ss_pred -----cC-CHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 22 23345678888999999999999999993
No 138
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.36 E-value=0.0026 Score=63.70 Aligned_cols=174 Identities=14% Similarity=0.131 Sum_probs=92.3
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC---CHHHHHHHHHHHHcCCCccc-------
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN---KVREHARKLLEKHIKKPFFE------- 526 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~---~~~~~~~Rl~~~~~g~~~~~------- 526 (709)
||.+-- +++|+++.|.|++|+|||+++..++--..-. ...|.++.-+. +.++.. -+..-.|+-++.
T Consensus 24 ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~-~GeI~i~G~~i~~ls~~~~~--~ir~r~GvlFQ~gALFssl 100 (263)
T COG1127 24 LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD-KGEILIDGEDIPQLSEEELY--EIRKRMGVLFQQGALFSSL 100 (263)
T ss_pred ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC-CCeEEEcCcchhccCHHHHH--HHHhheeEEeecccccccc
Confidence 455533 9999999999999999999998877665543 45566655442 222221 011112222110
Q ss_pred -cccC-----CCCCCCCHHHHHHHH-HHHhc---C---cceEEecCCCCC--CHHHHHHHHHHHHHhcCCcEEEEccCcc
Q 005204 527 -ANYG-----GSAERMTVEEFEQGK-AWLSN---T---FSLIRCENDSLP--SIKWVLDLAKAAVLRHGVRGLVIDPYNE 591 (709)
Q Consensus 527 -i~~g-----~~~~~l~~e~~~~~~-~~l~~---~---~~~i~~~~~~~~--~i~~i~~~i~~~~~~~~~~lIVID~~~~ 591 (709)
+.++ ....++++..++++. .++.- + ...+ ..+. .+..=.+.++. ...++++++.|
T Consensus 101 tV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~----PsELSGGM~KRvaLARA--ialdPell~~D---- 170 (263)
T COG1127 101 TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY----PSELSGGMRKRVALARA--IALDPELLFLD---- 170 (263)
T ss_pred chhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC----chhhcchHHHHHHHHHH--HhcCCCEEEec----
Confidence 0000 012356776666642 33321 1 1111 1111 12221122222 24678999999
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 592 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 592 l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
.+..+.+.- ....+..-++.+-..+++++++|+|.-.. +...||.+++|..-+
T Consensus 171 ---EPtsGLDPI-~a~~~~~LI~~L~~~lg~T~i~VTHDl~s------------------~~~i~Drv~~L~~gk 223 (263)
T COG1127 171 ---EPTSGLDPI-SAGVIDELIRELNDALGLTVIMVTHDLDS------------------LLTIADRVAVLADGK 223 (263)
T ss_pred ---CCCCCCCcc-hHHHHHHHHHHHHHhhCCEEEEEECChHH------------------HHhhhceEEEEeCCE
Confidence 222233221 12344555556667899999999994211 345678888887543
No 139
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.36 E-value=0.0049 Score=65.86 Aligned_cols=41 Identities=24% Similarity=0.299 Sum_probs=36.9
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005204 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
.+|++++|.|++|+||||++..+|..+... |.+|+.++.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEEEecCc
Confidence 467899999999999999999999998865 89999998875
No 140
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.35 E-value=0.0034 Score=65.56 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=41.9
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|.-. .+.+ ......+.+.|++++++.+.+||+++|.... +...+|
T Consensus 165 ~~~p~lllLDEPt-------~~LD-~~~~~~l~~~l~~~~~~~g~tviivsH~~~~------------------~~~~~d 218 (267)
T PRK15112 165 ILRPKVIIADEAL-------ASLD-MSMRSQLINLMLELQEKQGISYIYVTQHLGM------------------MKHISD 218 (267)
T ss_pred HhCCCEEEEcCCc-------ccCC-HHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH------------------HHHhcC
Confidence 3579999999322 2222 2334577888888888889999999995321 345678
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 219 ~i~~l~~ 225 (267)
T PRK15112 219 QVLVMHQ 225 (267)
T ss_pred EEEEEEC
Confidence 8877764
No 141
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.35 E-value=0.0018 Score=59.68 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=33.7
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005204 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
.+..++|.|+||+|||+++..++..+... +.++.|++...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~ 57 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASD 57 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhh
Confidence 36789999999999999999998888754 78888887643
No 142
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.34 E-value=0.0015 Score=68.75 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=37.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcC-CeEEEEECCC
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-WKFVLCSMEN 506 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g-~~Vly~SlE~ 506 (709)
+..|.+++|.|++|+||||++..++..++..+| .+|++++++.
T Consensus 191 ~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 191 LEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 346789999999999999999999999987544 8999999885
No 143
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.34 E-value=0.006 Score=62.41 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=32.3
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++|.-. .+. +......+.+.|++++++.+.+||+++|.
T Consensus 148 ~~~p~llllDEP~-------~~L-D~~~~~~l~~~l~~~~~~~~~tiii~sH~ 192 (236)
T TIGR03864 148 LHRPALLLLDEPT-------VGL-DPASRAAIVAHVRALCRDQGLSVLWATHL 192 (236)
T ss_pred hcCCCEEEEcCCc-------cCC-CHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 3678999999322 222 23345678888888887778999999995
No 144
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.33 E-value=0.0039 Score=63.07 Aligned_cols=61 Identities=11% Similarity=0.213 Sum_probs=42.2
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++|.-+ .+.+ ......+.+.|+.++++++.+||+++|.... +.+.+|
T Consensus 147 ~~~p~llllDEPt-------~~LD-~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~------------------~~~~~d 200 (220)
T cd03265 147 VHRPEVLFLDEPT-------IGLD-PQTRAHVWEYIEKLKEEFGMTILLTTHYMEE------------------AEQLCD 200 (220)
T ss_pred hcCCCEEEEcCCc-------cCCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCC
Confidence 4679999999322 2222 3334567788888888889999999994221 456778
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 201 ~i~~l~~ 207 (220)
T cd03265 201 RVAIIDH 207 (220)
T ss_pred EEEEEeC
Confidence 8888853
No 145
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.0056 Score=61.90 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=42.0
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|-- ..+. +......+.+.|++++++.+.+||+++|.... +...||
T Consensus 147 ~~~p~lllLDEP-------t~~L-D~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~------------------~~~~~d 200 (220)
T cd03293 147 AVDPDVLLLDEP-------FSAL-DALTREQLQEELLDIWRETGKTVLLVTHDIDE------------------AVFLAD 200 (220)
T ss_pred HcCCCEEEECCC-------CCCC-CHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH------------------HHHhCC
Confidence 357899999932 2222 23344567778888888889999999994321 456789
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|.+
T Consensus 201 ~i~~l~~ 207 (220)
T cd03293 201 RVVVLSA 207 (220)
T ss_pred EEEEEEC
Confidence 8888863
No 146
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.0014 Score=69.02 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=41.5
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|.-+. +. +......+++.|++++++.+.+|++++|.-.. +...||
T Consensus 157 ~~~p~lLilDEPt~-------gL-D~~~~~~l~~~l~~l~~~~g~tillvsH~~~~------------------~~~~~d 210 (283)
T PRK13636 157 VMEPKVLVLDEPTA-------GL-DPMGVSEIMKLLVEMQKELGLTIIIATHDIDI------------------VPLYCD 210 (283)
T ss_pred HcCCCEEEEeCCcc-------CC-CHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH------------------HHHhCC
Confidence 46799999993322 22 23344577888888888889999999994211 345677
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|.+
T Consensus 211 ri~~l~~ 217 (283)
T PRK13636 211 NVFVMKE 217 (283)
T ss_pred EEEEEEC
Confidence 7777754
No 147
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.00039 Score=69.67 Aligned_cols=63 Identities=16% Similarity=0.242 Sum_probs=48.8
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
...++++|.|--+..+ +...+.+++.-|..+.+++|.+.++++|.- +.+++.||
T Consensus 157 ~~~PklLIlDEptSaL--------D~siQa~IlnlL~~l~~~~~lt~l~IsHdl------------------~~v~~~cd 210 (252)
T COG1124 157 IPEPKLLILDEPTSAL--------DVSVQAQILNLLLELKKERGLTYLFISHDL------------------ALVEHMCD 210 (252)
T ss_pred ccCCCEEEecCchhhh--------cHHHHHHHHHHHHHHHHhcCceEEEEeCcH------------------HHHHHHhh
Confidence 3578999999433322 334467899999999999999999999952 23679999
Q ss_pred eEEEEeeCC
Q 005204 658 NGIVIHRNR 666 (709)
Q Consensus 658 ~vl~l~r~~ 666 (709)
.++++++..
T Consensus 211 Ri~Vm~~G~ 219 (252)
T COG1124 211 RIAVMDNGQ 219 (252)
T ss_pred heeeeeCCe
Confidence 999998755
No 148
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.30 E-value=0.0051 Score=59.99 Aligned_cols=30 Identities=37% Similarity=0.442 Sum_probs=25.1
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDAL 487 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~ql 487 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-+
T Consensus 11 l~~isl~i~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 444433 999999999999999999999755
No 149
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=0.0061 Score=62.18 Aligned_cols=61 Identities=13% Similarity=0.275 Sum_probs=42.3
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|.-. .+. +......+.+.|+.++++.+.+||+++|... .+...||
T Consensus 156 ~~~p~lllLDEP~-------~~L-D~~~~~~l~~~l~~~~~~~~~tvii~sH~~~------------------~~~~~~d 209 (233)
T cd03258 156 ANNPKVLLCDEAT-------SAL-DPETTQSILALLRDINRELGLTIVLITHEME------------------VVKRICD 209 (233)
T ss_pred hcCCCEEEecCCC-------CcC-CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH------------------HHHHhCC
Confidence 3678999999322 222 2334457788888888888999999999422 1456788
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|.+
T Consensus 210 ~i~~l~~ 216 (233)
T cd03258 210 RVAVMEK 216 (233)
T ss_pred EEEEEEC
Confidence 8888863
No 150
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.29 E-value=0.0061 Score=63.26 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=42.0
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++|-- ..+.+ ......+.+.|++++++.+.+||+++|.... +...||
T Consensus 144 ~~~p~lllLDEP-------t~~LD-~~~~~~l~~~L~~~~~~~g~tviivsH~~~~------------------~~~~~d 197 (255)
T PRK11248 144 AANPQLLLLDEP-------FGALD-AFTREQMQTLLLKLWQETGKQVLLITHDIEE------------------AVFMAT 197 (255)
T ss_pred hcCCCEEEEeCC-------CccCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCC
Confidence 357999999932 22222 3345567777888877779999999995322 456788
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 198 ~i~~l~~ 204 (255)
T PRK11248 198 ELVLLSP 204 (255)
T ss_pred EEEEEeC
Confidence 8888863
No 151
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.29 E-value=0.00094 Score=64.32 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=26.5
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 16 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998866543
No 152
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.28 E-value=0.0054 Score=66.12 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=33.1
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++|.|--+ ++. +.....++++.|+++.++++.+||+++|.
T Consensus 177 ~~~P~llilDEPt-------s~L-D~~~~~~i~~lL~~l~~~~~~til~iTHd 221 (331)
T PRK15079 177 ILEPKLIICDEPV-------SAL-DVSIQAQVVNLLQQLQREMGLSLIFIAHD 221 (331)
T ss_pred hcCCCEEEEeCCC-------ccC-CHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4679999999322 222 23345678888888888889999999993
No 153
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.28 E-value=0.0056 Score=61.71 Aligned_cols=33 Identities=27% Similarity=0.543 Sum_probs=26.9
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
-|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3455433 99999999999999999999887664
No 154
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.27 E-value=0.0066 Score=62.61 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=42.6
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|--+ .+. +......+.+.|++++++.+.+||+++|.... +.+.||
T Consensus 131 ~~~p~llllDEPt-------~~L-D~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~------------------~~~~~d 184 (246)
T cd03237 131 SKDADIYLLDEPS-------AYL-DVEQRLMASKVIRRFAENNEKTAFVVEHDIIM------------------IDYLAD 184 (246)
T ss_pred hcCCCEEEEeCCc-------ccC-CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCC
Confidence 4578999999322 222 23345577888888888889999999995221 456788
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 185 ~i~~l~~ 191 (246)
T cd03237 185 RLIVFEG 191 (246)
T ss_pred EEEEEcC
Confidence 8888754
No 155
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.27 E-value=0.0091 Score=64.27 Aligned_cols=45 Identities=11% Similarity=0.202 Sum_probs=33.7
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++|.|--+ ++. +.....++++.|+++.++.+.+||+++|.
T Consensus 169 ~~~P~llilDEPt-------s~L-D~~~~~~il~lL~~l~~~~g~til~iTHd 213 (326)
T PRK11022 169 ACRPKLLIADEPT-------TAL-DVTIQAQIIELLLELQQKENMALVLITHD 213 (326)
T ss_pred HhCCCEEEEeCCC-------CCC-CHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3679999999322 222 23445678888999998899999999993
No 156
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.27 E-value=0.0079 Score=61.45 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=26.3
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 16 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred ecCceEEecCCcEEEEECCCCCCHHHHHHHHcC
Confidence 444433 89999999999999999999887654
No 157
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.26 E-value=0.0019 Score=64.51 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=26.7
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 16 l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 444433 899999999999999999998876543
No 158
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.26 E-value=0.0042 Score=62.36 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=26.6
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 444433 899999999999999999998866543
No 159
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.25 E-value=0.00081 Score=61.57 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=26.2
Q ss_pred EEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005204 470 TIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 470 ~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
++|.|+||+|||+++..++..+ +.+++.++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----~~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----GFPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----TSEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhc----cccccccccc
Confidence 5799999999999988887764 6778777654
No 160
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.25 E-value=0.0013 Score=65.49 Aligned_cols=165 Identities=16% Similarity=0.182 Sum_probs=88.4
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHH--
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF-- 541 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~-- 541 (709)
+.+|+++.|.|+.|+||||++..++-.+-.. ...|.|-.-+.+.....+|...-++-+|..+- =...||.+|=
T Consensus 26 v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~-~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~----iF~~LTVeENL~ 100 (237)
T COG0410 26 VERGEIVALLGRNGAGKTTLLKTIMGLVRPR-SGRIIFDGEDITGLPPHERARLGIAYVPEGRR----IFPRLTVEENLL 100 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeeEEECCeecCCCCHHHHHhCCeEeCccccc----chhhCcHHHHHh
Confidence 8899999999999999999988765443222 44555544443322222333222222222110 0112333321
Q ss_pred ----------------HHH---HHHHhcCcceEEecCCCCCC--HHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCC
Q 005204 542 ----------------EQG---KAWLSNTFSLIRCENDSLPS--IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 600 (709)
Q Consensus 542 ----------------~~~---~~~l~~~~~~i~~~~~~~~~--i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~ 600 (709)
+++ +-.|.++.. ..-+..+ -.+.++..+.+ ..+|+++++|- +.-+
T Consensus 101 ~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~----~~aG~LSGGEQQMLAiaRAL--m~~PklLLLDE-------Ps~G- 166 (237)
T COG0410 101 LGAYARRDKEAQERDLEEVYELFPRLKERRN----QRAGTLSGGEQQMLAIARAL--MSRPKLLLLDE-------PSEG- 166 (237)
T ss_pred hhhhcccccccccccHHHHHHHChhHHHHhc----CcccCCChHHHHHHHHHHHH--hcCCCEEEecC-------CccC-
Confidence 111 111111100 0011111 12344444433 35789999992 1111
Q ss_pred CHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeC
Q 005204 601 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665 (709)
Q Consensus 601 ~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~ 665 (709)
-....+.++.+.++.+.++.+++|++|-||-.. .-..||...++.+-
T Consensus 167 LaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~------------------Al~iaDr~yvle~G 213 (237)
T COG0410 167 LAPKIVEEIFEAIKELRKEGGMTILLVEQNARF------------------ALEIADRGYVLENG 213 (237)
T ss_pred cCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH------------------HHHhhCEEEEEeCC
Confidence 123457789999999999999999999996322 23467887777653
No 161
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.25 E-value=0.0023 Score=65.22 Aligned_cols=61 Identities=11% Similarity=0.130 Sum_probs=41.8
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++|.-. .+.+ ......+.+.|++++++.+.+||+++|.-.. +...+|
T Consensus 141 ~~~p~vllLDEPt-------~~LD-~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~------------------~~~~~d 194 (230)
T TIGR02770 141 LLEPPFLIADEPT-------TDLD-VVNQARVLKLLRELRQLFGTGILLITHDLGV------------------VARIAD 194 (230)
T ss_pred hcCCCEEEEcCCc-------cccC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCC
Confidence 3578999999322 2222 3334567788888888789999999994211 446678
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|.+
T Consensus 195 ~i~~l~~ 201 (230)
T TIGR02770 195 EVAVMDD 201 (230)
T ss_pred EEEEEEC
Confidence 8888864
No 162
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.0034 Score=66.09 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=27.6
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 25 vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 59 (280)
T PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL 59 (280)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4555544 999999999999999999998776643
No 163
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.24 E-value=0.0044 Score=62.22 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=42.3
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|.-. .+. +......+++.|++++++.+.+||+++|.... +.+.||
T Consensus 144 ~~~p~llllDEP~-------~~L-D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~------------------~~~~~d 197 (211)
T cd03298 144 VRDKPVLLLDEPF-------AAL-DPALRAEMLDLVLDLHAETKMTVLMVTHQPED------------------AKRLAQ 197 (211)
T ss_pred hcCCCEEEEcCCc-------ccC-CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH------------------HHhhhC
Confidence 3578999999322 222 23334567888888888889999999994321 446788
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|.+
T Consensus 198 ~i~~l~~ 204 (211)
T cd03298 198 RVVFLDN 204 (211)
T ss_pred EEEEEEC
Confidence 8888864
No 164
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.24 E-value=0.0067 Score=61.21 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=27.4
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
-|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3455433 999999999999999999998876643
No 165
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.24 E-value=0.0047 Score=64.14 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=32.2
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++|-- ..+.+ ......+.+.|++++++.+.+||+++|.
T Consensus 149 ~~~p~lllLDEP-------t~~LD-~~~~~~l~~~L~~~~~~~~~tviivsHd 193 (257)
T PRK11247 149 IHRPGLLLLDEP-------LGALD-ALTRIEMQDLIESLWQQHGFTVLLVTHD 193 (257)
T ss_pred hcCCCEEEEeCC-------CCCCC-HHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 357899999932 22222 3345577788888888889999999995
No 166
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.23 E-value=0.0061 Score=62.41 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=42.0
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|.-. .+. +......+.+.|++++++.+.+||+++|.... +...||
T Consensus 169 ~~~p~llllDEPt-------~~L-D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~------------------~~~~~d 222 (236)
T cd03267 169 LHEPEILFLDEPT-------IGL-DVVAQENIRNFLKEYNRERGTTVLLTSHYMKD------------------IEALAR 222 (236)
T ss_pred hcCCCEEEEcCCC-------CCC-CHHHHHHHHHHHHHHHhcCCCEEEEEecCHHH------------------HHHhCC
Confidence 4578999999322 222 23445678888888888788999999995322 346678
Q ss_pred eEEEEe
Q 005204 658 NGIVIH 663 (709)
Q Consensus 658 ~vl~l~ 663 (709)
.++.|.
T Consensus 223 ~i~~l~ 228 (236)
T cd03267 223 RVLVID 228 (236)
T ss_pred EEEEEe
Confidence 888885
No 167
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.23 E-value=0.0077 Score=62.72 Aligned_cols=41 Identities=7% Similarity=0.102 Sum_probs=36.6
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005204 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
+|+.+++.|++|+|||+++..++..+..+ +.+|.+++.+-.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~-~~~v~~i~~D~~ 114 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHS 114 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEecCCC
Confidence 67899999999999999999999888765 899999998743
No 168
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.0045 Score=62.07 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=26.7
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 899999999999999999998877643
No 169
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.22 E-value=0.0013 Score=68.57 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=32.3
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++|.-. .+. +......+.+.|+.++++.+.+||+++|.
T Consensus 163 ~~~p~lllLDEPt-------~~L-D~~~~~~~~~~l~~l~~~~~~tiii~sH~ 207 (265)
T PRK10575 163 AQDSRCLLLDEPT-------SAL-DIAHQVDVLALVHRLSQERGLTVIAVLHD 207 (265)
T ss_pred hcCCCEEEEcCCc-------ccC-CHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4689999999322 222 23344577888888888789999999994
No 170
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.22 E-value=0.0068 Score=61.89 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=42.0
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|.-. .+.+ ......+.+.|+.++++.+.+||+++|.... +...+|
T Consensus 146 ~~~p~llllDEP~-------~gLD-~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~------------------~~~~~d 199 (232)
T cd03300 146 VNEPKVLLLDEPL-------GALD-LKLRKDMQLELKRLQKELGITFVFVTHDQEE------------------ALTMSD 199 (232)
T ss_pred hcCCCEEEEcCCc-------ccCC-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH------------------HHHhcC
Confidence 4578999999322 2222 3334567788888888789999999994321 456788
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 200 ~i~~l~~ 206 (232)
T cd03300 200 RIAVMNK 206 (232)
T ss_pred EEEEEEC
Confidence 8888864
No 171
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.22 E-value=0.0055 Score=66.47 Aligned_cols=45 Identities=11% Similarity=0.195 Sum_probs=32.8
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++|--+ .+.+ ......+.+.|++++++.+.+||+++|.
T Consensus 156 ~~~p~iLlLDEPt-------s~LD-~~~~~~l~~~L~~l~~~~g~tiilvtH~ 200 (343)
T PRK11153 156 ASNPKVLLCDEAT-------SALD-PATTRSILELLKDINRELGLTIVLITHE 200 (343)
T ss_pred HcCCCEEEEeCCc-------ccCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4579999999322 2222 3344578888888888889999999994
No 172
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.22 E-value=0.0032 Score=61.50 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=26.5
Q ss_pred hhhhhccCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYNVLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
++..+.+.+|+++.|.|++|+|||||+.-++-.
T Consensus 16 l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 16 LVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EccCcEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 444444899999999999999999998865543
No 173
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.21 E-value=0.0046 Score=64.24 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=42.4
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++|.-+ .+.+ ......+.+.|+.++++++.+||+++|.... +...||
T Consensus 167 ~~~p~llllDEPt-------~~LD-~~~~~~l~~~l~~~~~~~~~tii~isH~~~~------------------~~~~~d 220 (258)
T PRK11701 167 VTHPRLVFMDEPT-------GGLD-VSVQARLLDLLRGLVRELGLAVVIVTHDLAV------------------ARLLAH 220 (258)
T ss_pred hcCCCEEEEcCCc-------ccCC-HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH------------------HHHhcC
Confidence 3579999999322 2222 3345577788888888889999999995322 345678
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.+.+
T Consensus 221 ~i~~l~~ 227 (258)
T PRK11701 221 RLLVMKQ 227 (258)
T ss_pred EEEEEEC
Confidence 8888864
No 174
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.21 E-value=0.003 Score=61.42 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=26.5
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 16 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 899999999999999999998866543
No 175
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.21 E-value=0.011 Score=60.09 Aligned_cols=62 Identities=13% Similarity=0.245 Sum_probs=42.7
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++|.-. .+.+ ......+.+.|+.++++.+.+||+++|.... +. .||
T Consensus 153 ~~~p~llllDEPt-------~~LD-~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~------------------~~-~~d 205 (225)
T PRK10247 153 QFMPKVLLLDEIT-------SALD-ESNKHNVNEIIHRYVREQNIAVLWVTHDKDE------------------IN-HAD 205 (225)
T ss_pred hcCCCEEEEeCCc-------ccCC-HHHHHHHHHHHHHHHHhcCCEEEEEECChHH------------------HH-hCC
Confidence 3578999999322 2222 2335577788888888889999999995321 33 489
Q ss_pred eEEEEeeCC
Q 005204 658 NGIVIHRNR 666 (709)
Q Consensus 658 ~vl~l~r~~ 666 (709)
.++.|.++.
T Consensus 206 ~i~~l~~~~ 214 (225)
T PRK10247 206 KVITLQPHA 214 (225)
T ss_pred EEEEEeccc
Confidence 998886543
No 176
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.0011 Score=64.30 Aligned_cols=142 Identities=18% Similarity=0.129 Sum_probs=92.1
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHH
Q 005204 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG 544 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~ 544 (709)
..|.|.+++|+=++|||+-+++-+.+.... |.+|+.|.......... ..+....|....
T Consensus 2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~~~-g~~v~vfkp~iD~R~~~-~~V~Sr~G~~~~------------------- 60 (201)
T COG1435 2 KMGWLEFIYGPMFSGKTEELLRRARRYKEA-GMKVLVFKPAIDTRYGV-GKVSSRIGLSSE------------------- 60 (201)
T ss_pred ceEEEEEEEccCcCcchHHHHHHHHHHHHc-CCeEEEEeccccccccc-ceeeeccCCccc-------------------
Confidence 357899999999999999999999999887 99999998775433111 111111221111
Q ss_pred HHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEE
Q 005204 545 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624 (709)
Q Consensus 545 ~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~V 624 (709)
-..+ ++-.++.+.|........+++|+||-...+ . .+++..|.++|.++|++|
T Consensus 61 -------A~~i-------~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~-~------------~~~v~~l~~lad~lgi~V 113 (201)
T COG1435 61 -------AVVI-------PSDTDIFDEIAALHEKPPVDCVLIDEAQFF-D------------EELVYVLNELADRLGIPV 113 (201)
T ss_pred -------ceec-------CChHHHHHHHHhcccCCCcCEEEEehhHhC-C------------HHHHHHHHHHHhhcCCEE
Confidence 1222 133556666655443444899999943322 1 257888999999999999
Q ss_pred EEEeccCCCCCCCCCCCccccccCchhhhcccceEEEE
Q 005204 625 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVI 662 (709)
Q Consensus 625 i~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l 662 (709)
|+-.=...-.+ + -+.||..+-..||.+.-|
T Consensus 114 i~~GL~~DFrg----e----pFe~s~~Lla~ADkv~kL 143 (201)
T COG1435 114 ICYGLDTDFRG----E----PFEGSKYLLAIADKVTKL 143 (201)
T ss_pred EEecccccccc----C----CCccHHHHHHHHHHHHHH
Confidence 98654222211 1 266888888888875433
No 177
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.0028 Score=67.01 Aligned_cols=34 Identities=32% Similarity=0.339 Sum_probs=28.1
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl 56 (287)
T PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4555544 999999999999999999998877643
No 178
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.19 E-value=0.009 Score=61.36 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=41.4
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++|.-. .+.+ ......+.+.|++++++.+.+||+++|... .+...||
T Consensus 151 ~~~p~llllDEPt-------~~LD-~~~~~~l~~~L~~~~~~~g~tvii~sH~~~------------------~~~~~~d 204 (242)
T cd03295 151 AADPPLLLMDEPF-------GALD-PITRDQLQEEFKRLQQELGKTIVFVTHDID------------------EAFRLAD 204 (242)
T ss_pred hcCCCEEEecCCc-------ccCC-HHHHHHHHHHHHHHHHHcCCEEEEEecCHH------------------HHHHhCC
Confidence 3578999999322 2222 233456778888888877899999999421 1346778
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|.+
T Consensus 205 ~i~~l~~ 211 (242)
T cd03295 205 RIAIMKN 211 (242)
T ss_pred EEEEEEC
Confidence 8888764
No 179
>PF05729 NACHT: NACHT domain
Probab=97.19 E-value=0.0031 Score=60.02 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=25.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhc
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHA 495 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~ 495 (709)
+++|.|.||+|||+++..++..++.+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 789999999999999999999999873
No 180
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.19 E-value=0.0068 Score=65.35 Aligned_cols=45 Identities=11% Similarity=0.228 Sum_probs=33.6
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++|.|--+ ++. +.....+++..|+++.++++.+||+++|.
T Consensus 177 ~~~P~llilDEPt-------s~L-D~~~~~~i~~lL~~l~~~~g~til~iTHd 221 (330)
T PRK09473 177 LCRPKLLIADEPT-------TAL-DVTVQAQIMTLLNELKREFNTAIIMITHD 221 (330)
T ss_pred HcCCCEEEEeCCC-------ccC-CHHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 4679999999322 222 23445678888999999999999999993
No 181
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.19 E-value=0.0062 Score=64.98 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=28.1
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+++-- +.+|+++.|.|++|+||||++.-++--
T Consensus 22 ~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4555544 999999999999999999998877643
No 182
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.18 E-value=0.0045 Score=62.86 Aligned_cols=33 Identities=27% Similarity=0.251 Sum_probs=26.8
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 38 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998876653
No 183
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.18 E-value=0.009 Score=60.63 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=42.4
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++|.-. .+.+ ......+.+.|++++++.+.+||+++|... .+.+.||
T Consensus 161 ~~~p~lllLDEPt-------~~LD-~~~~~~l~~~l~~~~~~~~~tii~~sH~~~------------------~~~~~~d 214 (228)
T cd03257 161 ALNPKLLIADEPT-------SALD-VSVQAQILDLLKKLQEELGLTLLFITHDLG------------------VVAKIAD 214 (228)
T ss_pred hcCCCEEEecCCC-------CCCC-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH------------------HHHHhcC
Confidence 3578999999322 2222 333457888888888877999999999422 1456788
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 215 ~i~~l~~ 221 (228)
T cd03257 215 RVAVMYA 221 (228)
T ss_pred eEEEEeC
Confidence 8888863
No 184
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.18 E-value=0.0048 Score=65.72 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=26.7
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3555534 99999999999999999999876553
No 185
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.18 E-value=0.0029 Score=63.60 Aligned_cols=171 Identities=17% Similarity=0.181 Sum_probs=94.5
Q ss_pred cchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhc-C-----CeEEE-E------ECCCCHHHHHHHHHHHH
Q 005204 454 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHA-G-----WKFVL-C------SMENKVREHARKLLEKH 519 (709)
Q Consensus 454 g~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~-g-----~~Vly-~------SlE~~~~~~~~Rl~~~~ 519 (709)
.+..|+++-- +.+|+-+-|.|.+|+||||++.=++- +..-. | .+|.+ + ..|++..+-+ ++.+.+
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaG-i~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi-~l~~~~ 116 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG-IYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENI-YLRGLI 116 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhC-ccCCCCceEEEcceEehhhhcccCCCcccchHHHH-HHHHHH
Confidence 3456666655 99999999999999999998664443 32221 1 22221 1 2233322222 344555
Q ss_pred cCCCccccccCCCCCCC-CHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCC
Q 005204 520 IKKPFFEANYGGSAERM-TVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 598 (709)
Q Consensus 520 ~g~~~~~i~~g~~~~~l-~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~ 598 (709)
.|....++..- + .-.++.++-+++..++-. .+..-....+-..+....+++++||-.+..
T Consensus 117 ~G~~~~ei~~~-----~~eIieFaELG~fi~~Pvkt--------YSSGM~aRLaFsia~~~~pdILllDEvlav------ 177 (249)
T COG1134 117 LGLTRKEIDEK-----VDEIIEFAELGDFIDQPVKT--------YSSGMYARLAFSVATHVEPDILLLDEVLAV------ 177 (249)
T ss_pred hCccHHHHHHH-----HHHHHHHHHHHHHhhCchhh--------ccHHHHHHHHHhhhhhcCCCEEEEehhhhc------
Confidence 55544433210 0 001122222333322211 111111122223345568999999954333
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 599 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 599 ~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
.+...+.....++..+.++. .+||+|+|.-. .+.+.||.++.|+.-+
T Consensus 178 --GD~~F~~K~~~rl~e~~~~~-~tiv~VSHd~~------------------~I~~~Cd~~i~l~~G~ 224 (249)
T COG1134 178 --GDAAFQEKCLERLNELVEKN-KTIVLVSHDLG------------------AIKQYCDRAIWLEHGQ 224 (249)
T ss_pred --CCHHHHHHHHHHHHHHHHcC-CEEEEEECCHH------------------HHHHhcCeeEEEeCCE
Confidence 23455667788888887765 88999999522 3679999999998643
No 186
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.17 E-value=0.0082 Score=61.67 Aligned_cols=61 Identities=8% Similarity=0.110 Sum_probs=42.2
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++|--. .+.+ ......+.+.|+.++++.+.+||+++|.... +...||
T Consensus 147 ~~~p~llllDEPt-------~~LD-~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~------------------~~~~~d 200 (241)
T PRK14250 147 ANNPEVLLLDEPT-------SALD-PTSTEIIEELIVKLKNKMNLTVIWITHNMEQ------------------AKRIGD 200 (241)
T ss_pred hcCCCEEEEeCCc-------ccCC-HHHHHHHHHHHHHHHHhCCCEEEEEeccHHH------------------HHHhCC
Confidence 3578999999322 2222 2334567788888888779999999995321 446788
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 201 ~i~~l~~ 207 (241)
T PRK14250 201 YTAFLNK 207 (241)
T ss_pred EEEEEeC
Confidence 8888864
No 187
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.17 E-value=0.0062 Score=58.78 Aligned_cols=146 Identities=13% Similarity=0.062 Sum_probs=83.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC-----CCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHH
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME-----NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 543 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE-----~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~ 543 (709)
++.|.+++|.|||+.|+-+++.++.+ |.+|+++-+= ......+.++ ++.+.....+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~-g~~v~ivQFlKg~~~~GE~~~l~~~-----~~~~~~~g~g------------- 67 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGH-GKKVGVIQFIKGAWPNGERAAFEPH-----GVEFQVMGTG------------- 67 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCcccChHHHHHhc-----CcEEEECCCC-------------
Confidence 77788889999999999999999986 9999877331 2223333331 4433332221
Q ss_pred HHHHHhcCcceEEecCC-CCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCc
Q 005204 544 GKAWLSNTFSLIRCEND-SLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHAC 622 (709)
Q Consensus 544 ~~~~l~~~~~~i~~~~~-~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i 622 (709)
+.+...+.. ......+..+.++..+....+++||+|-++..+.-. -.++ .++++-|+. +--++
T Consensus 68 --------~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~g--li~~----~~v~~lL~~--rp~~~ 131 (173)
T TIGR00708 68 --------FTWETQNREADTAIAKAAWQHAKEMLADPELDLVLLDELTYALKYG--YLDV----EEVVEALQE--RPGHQ 131 (173)
T ss_pred --------CeecCCCcHHHHHHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCC--CcCH----HHHHHHHHh--CCCCC
Confidence 111100000 000122334445555556789999999877655421 1222 244444433 45578
Q ss_pred EEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 623 HVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 623 ~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
.||++.++-. ..+...||.|--|..-+
T Consensus 132 evVlTGR~~p-----------------~~l~e~AD~VTEm~~vK 158 (173)
T TIGR00708 132 HVIITGRGCP-----------------QDLLELADLVTEMRPVK 158 (173)
T ss_pred EEEEECCCCC-----------------HHHHHhCceeeeecccc
Confidence 8898766321 24778899987776544
No 188
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.17 E-value=0.0078 Score=67.68 Aligned_cols=182 Identities=20% Similarity=0.170 Sum_probs=96.5
Q ss_pred hhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHh---cCCeEEEEECC---CCHHHHHHHHHHHHcCCCccccc
Q 005204 456 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEH---AGWKFVLCSME---NKVREHARKLLEKHIKKPFFEAN 528 (709)
Q Consensus 456 ~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~---~g~~Vly~SlE---~~~~~~~~Rl~~~~~g~~~~~i~ 528 (709)
..++++-- +.+||.+.|.|.+|+|||++++.+.--.-.. .+..|+|-.-| ++..+. +++.....++-+++..
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~-r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREM-RKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHH-HHhccccEEEEecCch
Confidence 44555544 9999999999999999999988655433221 13455444332 222221 2222221222111110
Q ss_pred cCCCC---------------CCC-CHHHHHHHHHHHhc-----CcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Q 005204 529 YGGSA---------------ERM-TVEEFEQGKAWLSN-----TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 587 (709)
Q Consensus 529 ~g~~~---------------~~l-~~e~~~~~~~~l~~-----~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID 587 (709)
.-.+. ... ..+..+++.+.+.. +... ..+.+..+=..-...+-..+...+++++|.|
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~--~~yPheLSGG~rQRv~iAmALa~~P~LLIaD 179 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR--DRYPHQLSGGMRQRVMIAMALALKPKLLIAD 179 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh--ccCCcccCchHHHHHHHHHHHhCCCCEEEEC
Confidence 00000 001 11222333444432 1111 0112222222211122222345689999999
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 588 PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 588 ~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
- +.... +.....++++.|+.+.+++|+++++++|.=. -+.+.||.|++|++-+
T Consensus 180 E-------PTTaL-Dvt~q~qIL~llk~l~~e~g~a~l~ITHDl~------------------Vva~~aDrv~Vm~~G~ 232 (539)
T COG1123 180 E-------PTTAL-DVTTQAQILDLLKDLQRELGMAVLFITHDLG------------------VVAELADRVVVMYKGE 232 (539)
T ss_pred C-------Ccccc-CHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH------------------HHHHhcCeEEEEECCE
Confidence 3 22222 3345678999999999999999999999421 3678999999998754
No 189
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.17 E-value=0.014 Score=65.00 Aligned_cols=140 Identities=17% Similarity=0.171 Sum_probs=76.4
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHH--HHHHHHHcCCCccccccCCCCCCCCHHH-HHH
Q 005204 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA--RKLLEKHIKKPFFEANYGGSAERMTVEE-FEQ 543 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~--~Rl~~~~~g~~~~~i~~g~~~~~l~~e~-~~~ 543 (709)
..+++++|.+|+||||.+..+|..+..+ |++|++++.+.-..... .+.++...++++..... .-.+.+ ..+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~-----~~d~~~i~~~ 168 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKK-GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPD-----NKDAVEIAKE 168 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCC-----ccCHHHHHHH
Confidence 4589999999999999999999988876 99999999985311111 12234556666532211 112222 333
Q ss_pred HHHHHhc-CcceEEecCCCCCCH-HHHHHHHHHHHHh--cCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005204 544 GKAWLSN-TFSLIRCENDSLPSI-KWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 619 (709)
Q Consensus 544 ~~~~l~~-~~~~i~~~~~~~~~i-~~i~~~i~~~~~~--~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~ 619 (709)
+.+.+.. ..+++ +..+.... +.+.+.+..+... ...-++|+|... +. +.+...+.|...
T Consensus 169 al~~~~~~DvVII--DTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~--------gq-------~av~~a~~F~~~ 231 (437)
T PRK00771 169 GLEKFKKADVIIV--DTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATI--------GQ-------QAKNQAKAFHEA 231 (437)
T ss_pred HHHHhhcCCEEEE--ECCCcccchHHHHHHHHHHHHHhcccceeEEEeccc--------cH-------HHHHHHHHHHhc
Confidence 4444433 34444 32332322 3445555444332 234577778311 11 222333445555
Q ss_pred hCcEEEEEec
Q 005204 620 HACHVWFVAH 629 (709)
Q Consensus 620 ~~i~Vi~v~h 629 (709)
.++..++++.
T Consensus 232 l~i~gvIlTK 241 (437)
T PRK00771 232 VGIGGIIITK 241 (437)
T ss_pred CCCCEEEEec
Confidence 6666666665
No 190
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.16 E-value=0.0053 Score=61.66 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=24.2
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+.+|+++.|.|++|+|||||+.-++-.
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999998877643
No 191
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.16 E-value=0.0067 Score=62.88 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=41.1
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|.-. .+.+ ......+...|++++++.+.+||+++|.... +...+|
T Consensus 156 ~~~p~lLlLDEPt-------~~LD-~~~~~~l~~~L~~~~~~~g~til~~sH~~~~------------------~~~~~d 209 (254)
T PRK10418 156 LCEAPFIIADEPT-------TDLD-VVAQARILDLLESIVQKRALGMLLVTHDMGV------------------VARLAD 209 (254)
T ss_pred hcCCCEEEEeCCC-------cccC-HHHHHHHHHHHHHHHHhcCcEEEEEecCHHH------------------HHHhCC
Confidence 3678999999322 2222 2334567788888888889999999994211 345667
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 210 ~v~~l~~ 216 (254)
T PRK10418 210 DVAVMSH 216 (254)
T ss_pred EEEEEEC
Confidence 7777753
No 192
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.16 E-value=0.003 Score=64.77 Aligned_cols=61 Identities=11% Similarity=0.181 Sum_probs=41.6
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|.-+. +. +......+.+.|++++++.+.+||+++|.... +...||
T Consensus 146 ~~~p~llllDEP~~-------~L-D~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~------------------~~~~~d 199 (237)
T TIGR00968 146 AVEPQVLLLDEPFG-------AL-DAKVRKELRSWLRKLHDEVHVTTVFVTHDQEE------------------AMEVAD 199 (237)
T ss_pred hcCCCEEEEcCCcc-------cC-CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHhhcC
Confidence 35789999993221 22 23345667788888888779999999994321 345678
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 200 ~i~~l~~ 206 (237)
T TIGR00968 200 RIVVMSN 206 (237)
T ss_pred EEEEEEC
Confidence 8887763
No 193
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.16 E-value=0.0065 Score=60.56 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=29.0
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHH-hcCCeE
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINE-HAGWKF 499 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~-~~g~~V 499 (709)
+..|++++|.|++|+|||||+..++..+.. +.|.+|
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v 58 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPV 58 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEE
Confidence 667899999999999999999999876632 226554
No 194
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.16 E-value=0.0043 Score=61.51 Aligned_cols=34 Identities=35% Similarity=0.546 Sum_probs=27.5
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+-- +.+|+.+.|.|++|+|||||+.-++--
T Consensus 24 ~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3445444 999999999999999999998877653
No 195
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=0.0034 Score=65.62 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=26.8
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 25 l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 444434 999999999999999999998766543
No 196
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.16 E-value=0.0093 Score=56.89 Aligned_cols=144 Identities=13% Similarity=0.067 Sum_probs=79.9
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC-----CCCHHHHHHHHHHHHcCCCccccccCCCC-CCCCHHHHH
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM-----ENKVREHARKLLEKHIKKPFFEANYGGSA-ERMTVEEFE 542 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl-----E~~~~~~~~Rl~~~~~g~~~~~i~~g~~~-~~l~~e~~~ 542 (709)
++.|..++|.|||+.|.-+++.++.+ |.+|+++-+ +........++ -++.......+... ....+++..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~~v~~vQFlKg~~~~gE~~~l~~l----~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGH-GYRVGVVQFLKGGWKYGELKALERL----PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEEeCCCCccCHHHHHHhC----CCcEEEECCCCCccCCCChHHHHH
Confidence 78888888999999999999999987 999999543 22233333333 23333222111000 000000000
Q ss_pred HHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCc
Q 005204 543 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHAC 622 (709)
Q Consensus 543 ~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i 622 (709)
. .....+.++..+....+++||+|-++..+.-. .-.. .+++.-|++ +--++
T Consensus 79 ~---------------------a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~g---li~~---~~v~~ll~~--rp~~~ 129 (159)
T cd00561 79 A---------------------AAEGWAFAKEAIASGEYDLVILDEINYALGYG---LLDV---EEVVDLLKA--KPEDL 129 (159)
T ss_pred H---------------------HHHHHHHHHHHHhcCCCCEEEEechHhHhhCC---CCCH---HHHHHHHHc--CCCCC
Confidence 0 11223344445556679999999777665421 1122 334444443 34468
Q ss_pred EEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEe
Q 005204 623 HVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 663 (709)
Q Consensus 623 ~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~ 663 (709)
.||++.++-. ..+...||.|--+.
T Consensus 130 evIlTGr~~p-----------------~~l~e~AD~VTEm~ 153 (159)
T cd00561 130 ELVLTGRNAP-----------------KELIEAADLVTEMR 153 (159)
T ss_pred EEEEECCCCC-----------------HHHHHhCceeeecc
Confidence 8888776311 23667788775543
No 197
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.0048 Score=63.27 Aligned_cols=61 Identities=13% Similarity=0.208 Sum_probs=41.4
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++|.-. .+.+ ......+.+.|++++++.+.+||+++|... .+...||
T Consensus 152 ~~~p~llllDEP~-------~~LD-~~~~~~l~~~l~~~~~~~~~tvii~sH~~~------------------~~~~~~d 205 (239)
T cd03296 152 AVEPKVLLLDEPF-------GALD-AKVRKELRRWLRRLHDELHVTTVFVTHDQE------------------EALEVAD 205 (239)
T ss_pred hcCCCEEEEcCCc-------ccCC-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH------------------HHHHhCC
Confidence 3578999999322 2222 333456777788888877999999999422 1346678
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 206 ~i~~l~~ 212 (239)
T cd03296 206 RVVVMNK 212 (239)
T ss_pred EEEEEEC
Confidence 8888853
No 198
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.15 E-value=0.0068 Score=61.85 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=41.9
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|.-. .+. +......+.+.|+.++++.+.+||+++|.... +...+|
T Consensus 145 ~~~p~lllLDEP~-------~gL-D~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~------------------~~~~~d 198 (232)
T PRK10771 145 VREQPILLLDEPF-------SAL-DPALRQEMLTLVSQVCQERQLTLLMVSHSLED------------------AARIAP 198 (232)
T ss_pred hcCCCEEEEeCCc-------ccC-CHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH------------------HHHhCC
Confidence 3578999999322 222 23334567788888888889999999995332 346778
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 199 ~i~~l~~ 205 (232)
T PRK10771 199 RSLVVAD 205 (232)
T ss_pred EEEEEEC
Confidence 8888864
No 199
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.15 E-value=0.0042 Score=60.87 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=27.9
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.|+.+.- +.+|+.+.|.|++|+|||||+.-++-..
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555544 9999999999999999999987666443
No 200
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.14 E-value=0.0037 Score=68.99 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=26.9
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 19 L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl 52 (402)
T PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT 52 (402)
T ss_pred EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 444433 999999999999999999998877643
No 201
>PRK08181 transposase; Validated
Probab=97.14 E-value=0.0039 Score=64.96 Aligned_cols=40 Identities=25% Similarity=0.487 Sum_probs=35.9
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
+..++-++|.|+||+|||.++..++..++.+ |.+|+|++.
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-g~~v~f~~~ 142 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALIEN-GWRVLFTRT 142 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHHHc-CCceeeeeH
Confidence 4567789999999999999999999988877 999999975
No 202
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.14 E-value=0.0072 Score=63.50 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=27.6
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3455444 999999999999999999998877643
No 203
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.14 E-value=0.008 Score=62.83 Aligned_cols=61 Identities=15% Similarity=0.261 Sum_probs=42.2
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|.-. .+.+ ......+.+.|+.++++.+.+||+++|.... +...||
T Consensus 167 ~~~p~lllLDEPt-------~~LD-~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~------------------i~~~~d 220 (268)
T PRK10419 167 AVEPKLLILDEAV-------SNLD-LVLQAGVIRLLKKLQQQFGTACLFITHDLRL------------------VERFCQ 220 (268)
T ss_pred hcCCCEEEEeCCC-------cccC-HHHHHHHHHHHHHHHHHcCcEEEEEECCHHH------------------HHHhCC
Confidence 3678999999322 2222 3334567888888888889999999995322 446778
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 221 ~i~~l~~ 227 (268)
T PRK10419 221 RVMVMDN 227 (268)
T ss_pred EEEEEEC
Confidence 8888864
No 204
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.14 E-value=0.004 Score=66.36 Aligned_cols=35 Identities=29% Similarity=0.480 Sum_probs=28.4
Q ss_pred hhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 456 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 456 ~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+.|+++.- +.+|+++.|.|++|+|||||+.-++--
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 35666544 999999999999999999998776643
No 205
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.14 E-value=0.0032 Score=68.36 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=32.0
Q ss_pred cCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 579 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 579 ~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..++++++|--. ++. +.....++...|+++.++.++++|+++|.
T Consensus 153 ~~P~lLLLDEP~-------s~L-D~~~r~~l~~~l~~l~~~~g~tii~vTHd 196 (351)
T PRK11432 153 LKPKVLLFDEPL-------SNL-DANLRRSMREKIRELQQQFNITSLYVTHD 196 (351)
T ss_pred cCCCEEEEcCCc-------ccC-CHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 578999999222 222 23334567888888888999999999994
No 206
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.13 E-value=0.0011 Score=72.67 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=32.2
Q ss_pred cCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 579 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 579 ~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
.+++++++|-=. ++.+ ......+...|+++.++.+++||+++|.
T Consensus 161 ~~P~llLLDEP~-------s~LD-~~~r~~l~~~L~~l~~~~g~tiI~vTHd 204 (375)
T PRK09452 161 NKPKVLLLDESL-------SALD-YKLRKQMQNELKALQRKLGITFVFVTHD 204 (375)
T ss_pred cCCCEEEEeCCC-------CcCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 578999999221 2222 2334568888889999999999999994
No 207
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.12 E-value=0.0038 Score=68.03 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=32.5
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++|--+ ++. +......+...|+++.++.+++||+++|.
T Consensus 150 ~~~P~llLLDEP~-------s~L-D~~~r~~l~~~l~~l~~~~g~tii~vTHd 194 (356)
T PRK11650 150 VREPAVFLFDEPL-------SNL-DAKLRVQMRLEIQRLHRRLKTTSLYVTHD 194 (356)
T ss_pred hcCCCEEEEeCCc-------ccC-CHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3579999999322 222 23334567888888988899999999994
No 208
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.12 E-value=0.0096 Score=62.98 Aligned_cols=34 Identities=32% Similarity=0.244 Sum_probs=27.5
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3555434 999999999999999999998877643
No 209
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.11 E-value=0.0036 Score=66.21 Aligned_cols=34 Identities=32% Similarity=0.305 Sum_probs=27.8
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC
Confidence 4555444 999999999999999999998876643
No 210
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.017 Score=65.03 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=37.7
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhc-CCeEEEEECCC
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSMEN 506 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~-g~~Vly~SlE~ 506 (709)
+..|++++|.|++|+||||++..|+..++..+ +.+|.+++.+.
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDt 390 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDT 390 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccc
Confidence 56799999999999999999999999888764 57899998864
No 211
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.11 E-value=0.0061 Score=61.26 Aligned_cols=33 Identities=30% Similarity=0.500 Sum_probs=26.8
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 15 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 454433 999999999999999999998866543
No 212
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.10 E-value=0.0061 Score=65.40 Aligned_cols=38 Identities=24% Similarity=0.614 Sum_probs=33.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
|+++.|.||+||||++..++..+....|++|++++.+.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd 38 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDD 38 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccc
Confidence 57899999999999999999888754599999999885
No 213
>PRK12377 putative replication protein; Provisional
Probab=97.10 E-value=0.0039 Score=64.15 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=33.5
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
.-++|.|+||+|||.++..++..+..+ |..|+|++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~-g~~v~~i~~~ 138 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK-GRSVIVVTVP 138 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEHH
Confidence 578999999999999999999999876 9999999875
No 214
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.10 E-value=0.013 Score=61.16 Aligned_cols=61 Identities=15% Similarity=0.251 Sum_probs=41.9
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++|.-+ .+.+ ......+.+.|++++++.+.+||+++|.... +...||
T Consensus 166 ~~~p~illLDEPt-------~~LD-~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~------------------~~~~~d 219 (265)
T TIGR02769 166 AVKPKLIVLDEAV-------SNLD-MVLQAVILELLRKLQQAFGTAYLFITHDLRL------------------VQSFCQ 219 (265)
T ss_pred hcCCCEEEEeCCc-------ccCC-HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH------------------HHHHhc
Confidence 3578999999322 2222 2334578888888888789999999994221 345778
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|.+
T Consensus 220 ~i~~l~~ 226 (265)
T TIGR02769 220 RVAVMDK 226 (265)
T ss_pred EEEEEeC
Confidence 8888864
No 215
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.09 E-value=0.012 Score=59.19 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=26.6
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 444433 899999999999999999998776643
No 216
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.09 E-value=0.012 Score=60.78 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=41.7
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|.-. .+.+ ......+...|++++++.+.+||+++|.... +...+|
T Consensus 162 ~~~p~llllDEP~-------~~LD-~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~------------------~~~~~d 215 (252)
T TIGR03005 162 AMRPKVMLFDEVT-------SALD-PELVGEVLNVIRRLASEHDLTMLLVTHEMGF------------------AREFAD 215 (252)
T ss_pred HcCCCEEEEeCCc-------ccCC-HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH------------------HHHhcC
Confidence 3578999999322 2222 2334577888888888889999999994321 345678
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 216 ~i~~l~~ 222 (252)
T TIGR03005 216 RVCFFDK 222 (252)
T ss_pred EEEEEEC
Confidence 8888764
No 217
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.09 E-value=0.0056 Score=66.62 Aligned_cols=45 Identities=11% Similarity=0.103 Sum_probs=32.5
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++|.-. ++.+ ......+.+.|+++.+++++++|+++|.
T Consensus 152 ~~~P~llLLDEP~-------s~LD-~~~r~~l~~~L~~l~~~~g~tii~vTHd 196 (353)
T PRK10851 152 AVEPQILLLDEPF-------GALD-AQVRKELRRWLRQLHEELKFTSVFVTHD 196 (353)
T ss_pred hcCCCEEEEeCCC-------ccCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3578999999322 2222 2334567888888988899999999994
No 218
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.09 E-value=0.0067 Score=65.63 Aligned_cols=82 Identities=13% Similarity=0.151 Sum_probs=61.6
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHH-HhcCCeEEEEECCC----CHHHHHHHHHHHHcCCCccccccCCCCCCCCHH
Q 005204 465 LPGELTIVTGVPNSGKSEWIDALICNIN-EHAGWKFVLCSMEN----KVREHARKLLEKHIKKPFFEANYGGSAERMTVE 539 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a-~~~g~~Vly~SlE~----~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e 539 (709)
.+|.+++|.||+|+||||-+..||.... .....+|.+++++- ..+|+ +.++...++|+... .++.
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQL--k~Ya~im~vp~~vv--------~~~~ 270 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQL--KTYADIMGVPLEVV--------YSPK 270 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHH--HHHHHHhCCceEEe--------cCHH
Confidence 4488999999999999999999999999 33368899999983 23333 45677888887653 4667
Q ss_pred HHHHHHHHHhc-CcceEE
Q 005204 540 EFEQGKAWLSN-TFSLIR 556 (709)
Q Consensus 540 ~~~~~~~~l~~-~~~~i~ 556 (709)
+++++...+.+ .+++++
T Consensus 271 el~~ai~~l~~~d~ILVD 288 (407)
T COG1419 271 ELAEAIEALRDCDVILVD 288 (407)
T ss_pred HHHHHHHHhhcCCEEEEe
Confidence 88877776665 355553
No 219
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.08 E-value=0.0053 Score=58.93 Aligned_cols=183 Identities=16% Similarity=0.241 Sum_probs=89.0
Q ss_pred ccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCc----
Q 005204 451 ISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF---- 524 (709)
Q Consensus 451 i~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~---- 524 (709)
+.+-+..+.-.+. ++.|+.+.|.|++|+||||++.-+|--..-+ ...+..-.-+++...-.+|=.+++..-..
T Consensus 7 V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~-~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaH 85 (231)
T COG3840 7 VRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA-SGEILINGVDHTASPPAERPVSMLFQENNLFAH 85 (231)
T ss_pred eEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC-CceEEEcCeecCcCCcccCChhhhhhccccchh
Confidence 3344444444444 9999999999999999999976555433322 33333332233322112221111100000
Q ss_pred ----cccccC-CCCCCCCHHHHHHHHHHHhcC---cceEEecCCCCCC--HHHHHHHHHHHHHhcCCcEEEEcc-Ccccc
Q 005204 525 ----FEANYG-GSAERMTVEEFEQGKAWLSNT---FSLIRCENDSLPS--IKWVLDLAKAAVLRHGVRGLVIDP-YNELD 593 (709)
Q Consensus 525 ----~~i~~g-~~~~~l~~e~~~~~~~~l~~~---~~~i~~~~~~~~~--i~~i~~~i~~~~~~~~~~lIVID~-~~~l~ 593 (709)
..+--| .+.-+++.++.+++...+... -+.-+. .+..+ -.+=.+.++-+++.. .+..+|- +..+
T Consensus 86 LtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RL--P~~LSGGqRQRvALARclvR~~--PilLLDEPFsAL- 160 (231)
T COG3840 86 LTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRL--PGELSGGQRQRVALARCLVREQ--PILLLDEPFSAL- 160 (231)
T ss_pred hhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhC--ccccCchHHHHHHHHHHHhccC--CeEEecCchhhc-
Confidence 000001 011256666655543332210 000000 11111 122233444444433 4666772 2122
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 594 ~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
+. ..-.+|..-+.+++.+.+.++++|+| +.. ....||.++++.+-+
T Consensus 161 -------dP-~LR~eMl~Lv~~l~~E~~~TllmVTH~~~D-------------------a~~ia~~~~fl~~Gr 207 (231)
T COG3840 161 -------DP-ALRAEMLALVSQLCDERKMTLLMVTHHPED-------------------AARIADRVVFLDNGR 207 (231)
T ss_pred -------CH-HHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-------------------HHHhhhceEEEeCCE
Confidence 11 11235677778899999999999999 422 346778888887543
No 220
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.003 Score=62.61 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=79.1
Q ss_pred cCCCcE-EEEEccCCCChHHHHHHHHHHHHHh----cCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCH
Q 005204 464 VLPGEL-TIVTGVPNSGKSEWIDALICNINEH----AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTV 538 (709)
Q Consensus 464 l~~G~L-~ii~G~pG~GKT~~a~qla~~~a~~----~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~ 538 (709)
+..|.+ +++.|+|++||||++..+|..++.. -+.+|+.+. ++. +++ +...|++....
T Consensus 133 y~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiD--ers-EIa----g~~~gvpq~~~----------- 194 (308)
T COG3854 133 YQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIID--ERS-EIA----GCLNGVPQHGR----------- 194 (308)
T ss_pred HhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEe--ccc-hhh----ccccCCchhhh-----------
Confidence 677888 9999999999999999999998875 356787774 221 222 23334433221
Q ss_pred HHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 005204 539 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQ 618 (709)
Q Consensus 539 e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~ 618 (709)
..++.+. +..+-.+-++. +++.+-+++||||-+-.. .+ ...+. -|-
T Consensus 195 ----------g~R~dVl----d~cpk~~gmmm----aIrsm~PEViIvDEIGt~--------~d---~~A~~-----ta~ 240 (308)
T COG3854 195 ----------GRRMDVL----DPCPKAEGMMM----AIRSMSPEVIIVDEIGTE--------ED---ALAIL-----TAL 240 (308)
T ss_pred ----------hhhhhhc----ccchHHHHHHH----HHHhcCCcEEEEeccccH--------HH---HHHHH-----HHH
Confidence 1122222 23333333333 345678999999932211 11 11222 234
Q ss_pred HhCcEEEEEec-cCCCCCCCCCCCccccccC
Q 005204 619 HHACHVWFVAH-PRQLHNWVGEPPNLYDISG 648 (709)
Q Consensus 619 ~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~G 648 (709)
+.|+-++.++| ++-.+- .++|++.|+-|
T Consensus 241 ~~GVkli~TaHG~~iedl--~krp~lkdlv~ 269 (308)
T COG3854 241 HAGVKLITTAHGNGIEDL--IKRPTLKDLVE 269 (308)
T ss_pred hcCcEEEEeeccccHHHh--hcChhHHHHHh
Confidence 57999999999 654432 47788888764
No 221
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.013 Score=59.87 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=41.7
Q ss_pred HhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhccc
Q 005204 577 LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKC 656 (709)
Q Consensus 577 ~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~A 656 (709)
-..+++++++|.-+ .+. +......+.+.|+.++.+.+.+||+++|.... +...+
T Consensus 144 l~~~p~llllDEPt-------~gL-D~~~~~~l~~~l~~~~~~~~~tili~tH~~~~------------------~~~~~ 197 (235)
T cd03299 144 LVVNPKILLLDEPF-------SAL-DVRTKEKLREELKKIRKEFGVTVLHVTHDFEE------------------AWALA 197 (235)
T ss_pred HHcCCCEEEECCCc-------ccC-CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH------------------HHHhC
Confidence 34678999999322 122 23334577888888888889999999994221 34567
Q ss_pred ceEEEEee
Q 005204 657 DNGIVIHR 664 (709)
Q Consensus 657 D~vl~l~r 664 (709)
|.++.|..
T Consensus 198 d~i~~l~~ 205 (235)
T cd03299 198 DKVAIMLN 205 (235)
T ss_pred CEEEEEEC
Confidence 88888764
No 222
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.06 E-value=0.0029 Score=62.48 Aligned_cols=32 Identities=28% Similarity=0.273 Sum_probs=25.8
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 444433 99999999999999999999876543
No 223
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.06 E-value=0.011 Score=61.20 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=26.8
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 21 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998866654
No 224
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.014 Score=61.16 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=41.9
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++|- +..+. +......+.+.|+.++++.+.+||+++|.... +...+|
T Consensus 176 ~~~p~illLDE-------Pt~~L-D~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~------------------~~~~~d 229 (269)
T cd03294 176 AVDPDILLMDE-------AFSAL-DPLIRREMQDELLRLQAELQKTIVFITHDLDE------------------ALRLGD 229 (269)
T ss_pred hcCCCEEEEcC-------CCccC-CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhcC
Confidence 36789999992 22222 23345577778888887778999999994221 346788
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 230 ~v~~l~~ 236 (269)
T cd03294 230 RIAIMKD 236 (269)
T ss_pred EEEEEEC
Confidence 8888864
No 225
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.05 E-value=0.014 Score=60.24 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=26.5
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK11264 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINL 51 (250)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 444434 99999999999999999999886654
No 226
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.05 E-value=0.012 Score=59.67 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=24.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+.+|+++.|.|++|+|||||+.-++-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999998866643
No 227
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.0039 Score=65.44 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=26.7
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 17 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~G 50 (275)
T PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNG 50 (275)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3444433 99999999999999999999886654
No 228
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.011 Score=64.75 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=32.2
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++|--+ ++.+ ......+...|+++.++.+.+||+++|.
T Consensus 149 ~~~P~lLLLDEPt-------s~LD-~~~~~~l~~~L~~l~~~~g~tvI~vTHd 193 (369)
T PRK11000 149 VAEPSVFLLDEPL-------SNLD-AALRVQMRIEISRLHKRLGRTMIYVTHD 193 (369)
T ss_pred hcCCCEEEEeCCc-------ccCC-HHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 3579999999322 2222 3334567788888888889999999994
No 229
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.03 E-value=0.004 Score=65.50 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=33.4
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
-.+++++++|.-+ .+.+ ......+++.|++++++.+.+||+++|.
T Consensus 156 ~~~p~lLlLDEPt-------~~LD-~~~~~~l~~~l~~l~~~~g~tilivtH~ 200 (279)
T PRK13650 156 AMRPKIIILDEAT-------SMLD-PEGRLELIKTIKGIRDDYQMTVISITHD 200 (279)
T ss_pred HcCCCEEEEECCc-------ccCC-HHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4578999999322 2222 3445678888999988889999999994
No 230
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.0082 Score=65.73 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=34.8
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHh---cCCeEEEEECCC
Q 005204 467 GELTIVTGVPNSGKSEWIDALICNINEH---AGWKFVLCSMEN 506 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~---~g~~Vly~SlE~ 506 (709)
+.++++.|++|+||||.+..+|..+... +|.+|++++.+-
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence 4599999999999999999999888743 378999999984
No 231
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.02 E-value=0.014 Score=63.20 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=28.2
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+-- +.+|+++.|.|++|+||||++.-++--
T Consensus 56 ~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4566544 999999999999999999998877653
No 232
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.02 E-value=0.013 Score=59.07 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=26.3
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 21 l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 444433 89999999999999999999876654
No 233
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=97.01 E-value=0.0034 Score=62.77 Aligned_cols=165 Identities=15% Similarity=0.131 Sum_probs=83.2
Q ss_pred cccccchhhhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHh---cCCeEEEEECCCCHHHHHHHHHHHHcCCCc
Q 005204 450 GISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH---AGWKFVLCSMENKVREHARKLLEKHIKKPF 524 (709)
Q Consensus 450 gi~tg~~~LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~---~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~ 524 (709)
.++.|......-+. +....-++|+|.||+|||+++..++..++.. ....+..+.+-.. .+ +.+.+.+.
T Consensus 19 ~i~~g~~~~~~~v~~dl~~~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~--~l-----~~~~~~~~ 91 (205)
T PF01580_consen 19 PIPVGVDQRGDPVVLDLKKNPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKGS--DL-----APLADLPH 91 (205)
T ss_dssp EEEEEEETTS-EEEEEGGGS-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS--CC-----GGGTT-TT
T ss_pred EEEecccCCCCEEEEEcCCCceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCcc--cc-----chhhhhhh
Confidence 44445444333222 5555579999999999999999999999983 2555656655422 11 11111111
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHh----cCcceEEecCCCCCCHHHHHHHHHHHHH---------hcCCcEEEEccCcc
Q 005204 525 FEANYGGSAERMTVEEFEQGKAWLS----NTFSLIRCENDSLPSIKWVLDLAKAAVL---------RHGVRGLVIDPYNE 591 (709)
Q Consensus 525 ~~i~~g~~~~~l~~e~~~~~~~~l~----~~~~~i~~~~~~~~~i~~i~~~i~~~~~---------~~~~~lIVID~~~~ 591 (709)
. ..+ ...-+.++..++.+++. .+.-++.. .+..+++........+.. ....-+++||.+..
T Consensus 92 ~--~~~--~~~~~~~~~~~~l~~l~~em~~R~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~iDe~~~ 165 (205)
T PF01580_consen 92 V--AAV--AVATDPEEILRLLEELVEEMERRQALLRE--AGVRNIDDYNEERGELPDDIFADPWLKELPPIFIVIDEFAA 165 (205)
T ss_dssp B--SS---S-B-SHHHHHHHHHHHHHHHHHHHHHHHH--CT-SSHHHHHHHHHHHHHTT----B-----EEEEEECTHHH
T ss_pred h--ccc--cccccHHHHHHHHHHHHHHHHHHHHHHHH--cCccchhhHHHHhhhhccccccccccccCchHHHHhhhHHH
Confidence 1 000 00124445444433332 22222211 233344442223222211 24567899999888
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec
Q 005204 592 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 629 (709)
Q Consensus 592 l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h 629 (709)
+..... ......+.+.+.+|.+.++..|+++|+.+|
T Consensus 166 l~~~~~--~~~~~~~~~~l~~i~~~gR~~Gi~li~~~Q 201 (205)
T PF01580_consen 166 LRDSAP--DDSKKEIMDLLARIARKGRAAGIHLILATQ 201 (205)
T ss_dssp HHHHHH--HH----HHHHHHHHHHHCGGGTEEEEEEES
T ss_pred HHhhcc--hhhHHHHHHHHHHHHHHHHhcCEEEEEEeC
Confidence 865321 001234567777888889999999999999
No 234
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.01 E-value=0.0032 Score=66.99 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=42.6
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
-|+++.. ..++.++.|.|+||+|||||+..++..+... |.+|.+++++.+
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~-~~~v~~i~~D~~ 73 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR-GLKVAVIAVDPS 73 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 3455544 6788999999999999999999999988876 999999998854
No 235
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.01 E-value=0.014 Score=60.96 Aligned_cols=45 Identities=11% Similarity=0.100 Sum_probs=32.2
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++|-- ..+.+ ......+.+.|++++++.+.+||+++|.
T Consensus 159 ~~~p~lllLDEP-------t~~LD-~~~~~~l~~~l~~~~~~~g~tiiivsH~ 203 (269)
T PRK11831 159 ALEPDLIMFDEP-------FVGQD-PITMGVLVKLISELNSALGVTCVVVSHD 203 (269)
T ss_pred hcCCCEEEEcCC-------CccCC-HHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 357899999932 12222 3445677888888888789999999994
No 236
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.012 Score=58.97 Aligned_cols=166 Identities=20% Similarity=0.241 Sum_probs=85.8
Q ss_pred ccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC---CHHHHHHHHHHHHcCCCccc
Q 005204 451 ISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN---KVREHARKLLEKHIKKPFFE 526 (709)
Q Consensus 451 i~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~---~~~~~~~Rl~~~~~g~~~~~ 526 (709)
++.|-..|+++-- +.+||++.|.|++|+|||||+..+.--.=...| .+.+-..+. ...+ .+++ ....|+-++.
T Consensus 13 yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G-~i~~~g~~i~~~~~k~-lr~~-r~~iGmIfQ~ 89 (258)
T COG3638 13 YPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG-EILFNGVQITKLKGKE-LRKL-RRDIGMIFQQ 89 (258)
T ss_pred cCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcc-eEEecccchhccchHH-HHHH-HHhceeEecc
Confidence 3345556666644 999999999999999999999877652211112 333222221 1111 1111 1222222211
Q ss_pred c---c---------cC---C------CCCCCCHHHHHHHHHHHhcC----cceEEecCCCCCCHHHHHHHHHHHHHhcCC
Q 005204 527 A---N---------YG---G------SAERMTVEEFEQGKAWLSNT----FSLIRCENDSLPSIKWVLDLAKAAVLRHGV 581 (709)
Q Consensus 527 i---~---------~g---~------~~~~l~~e~~~~~~~~l~~~----~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~ 581 (709)
. . .| . -.+-++.++...+.+.|..- .-+-+.+ .-...-.+=.+.++.++ .++
T Consensus 90 ~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-~LSGGQQQRVaIARaL~--Q~p 166 (258)
T COG3638 90 FNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-TLSGGQQQRVAIARALV--QQP 166 (258)
T ss_pred CCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc-cCCcchhHHHHHHHHHh--cCC
Confidence 0 0 00 0 01235566666665554331 0011111 00111122223333333 568
Q ss_pred cEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 582 RGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 582 ~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
++|.=|- +..+. +......+|+.|++++++.|++||+.-|.
T Consensus 167 kiILADE-------PvasL-Dp~~a~~Vm~~l~~in~~~g~Tvi~nLH~ 207 (258)
T COG3638 167 KIILADE-------PVASL-DPESAKKVMDILKDINQEDGITVIVNLHQ 207 (258)
T ss_pred CEEecCC-------ccccc-ChhhHHHHHHHHHHHHHHcCCEEEEEech
Confidence 9998882 11122 23345689999999999999999999993
No 237
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.00 E-value=0.0093 Score=61.70 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=41.3
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|.-+ .+.+ ......+.+.|++++++.+.+||+++|.... +...+|
T Consensus 164 ~~~p~vlllDEP~-------~~LD-~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~------------------~~~~~d 217 (253)
T TIGR02323 164 VTRPRLVFMDEPT-------GGLD-VSVQARLLDLLRGLVRDLGLAVIIVTHDLGV------------------ARLLAQ 217 (253)
T ss_pred hcCCCEEEEcCCC-------ccCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhcC
Confidence 4679999999322 1222 2334567777888888889999999994221 345678
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 218 ~~~~l~~ 224 (253)
T TIGR02323 218 RLLVMQQ 224 (253)
T ss_pred EEEEEEC
Confidence 8888764
No 238
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=0.015 Score=64.19 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=32.2
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++|--. .+.+ ......+.+.|+++.++.+.+||+++|.
T Consensus 180 ~~~P~iLLLDEPt-------s~LD-~~~r~~l~~~L~~l~~~~g~TIIivTHd 224 (400)
T PRK10070 180 AINPDILLMDEAF-------SALD-PLIRTEMQDELVKLQAKHQRTIVFISHD 224 (400)
T ss_pred hcCCCEEEEECCC-------ccCC-HHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3578999999322 2222 3344577888888888889999999993
No 239
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.99 E-value=0.011 Score=64.41 Aligned_cols=44 Identities=11% Similarity=0.152 Sum_probs=32.2
Q ss_pred cCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 579 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 579 ~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
.+++++++|--. ++. +.....++...|+++.++.+++||+++|.
T Consensus 151 ~~P~llLLDEP~-------s~L-D~~~r~~l~~~L~~l~~~~~~tvi~vTHd 194 (353)
T TIGR03265 151 TSPGLLLLDEPL-------SAL-DARVREHLRTEIRQLQRRLGVTTIMVTHD 194 (353)
T ss_pred cCCCEEEEcCCc-------ccC-CHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 578999999322 222 23334578888888989999999999994
No 240
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=0.0063 Score=63.02 Aligned_cols=61 Identities=13% Similarity=0.218 Sum_probs=42.0
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|.-+ .+. +......+.+.|++++++.+++||+++|.... +...+|
T Consensus 169 ~~~p~llllDEPt-------~~L-D~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~------------------~~~~~d 222 (255)
T PRK11300 169 VTQPEILMLDEPA-------AGL-NPKETKELDELIAELRNEHNVTVLLIEHDMKL------------------VMGISD 222 (255)
T ss_pred hcCCCEEEEcCCc-------cCC-CHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH------------------HHHhCC
Confidence 4678999999322 222 23344567778888888789999999994221 456778
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|.+
T Consensus 223 ~i~~l~~ 229 (255)
T PRK11300 223 RIYVVNQ 229 (255)
T ss_pred EEEEEEC
Confidence 8888864
No 241
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.98 E-value=0.006 Score=61.98 Aligned_cols=35 Identities=29% Similarity=0.472 Sum_probs=28.1
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
-|+.+.- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 22 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3455433 9999999999999999999988776543
No 242
>PRK10908 cell division protein FtsE; Provisional
Probab=96.98 E-value=0.0063 Score=61.62 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=26.9
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 899999999999999999998877643
No 243
>PF13245 AAA_19: Part of AAA domain
Probab=96.98 E-value=0.0019 Score=53.63 Aligned_cols=50 Identities=22% Similarity=0.332 Sum_probs=38.3
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhc---CCeEEEEECCCC-HHHHHHHH
Q 005204 466 PGELTIVTGVPNSGKSEWIDALICNINEHA---GWKFVLCSMENK-VREHARKL 515 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~---g~~Vly~SlE~~-~~~~~~Rl 515 (709)
.+.+.+|.|+||+|||+.+.+.+.++.... +.+|+++++-.. .+++.+|+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 356899999999999999999999888531 678999988744 33444454
No 244
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.97 E-value=0.0061 Score=62.10 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=26.9
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred eccceeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998877643
No 245
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.97 E-value=0.012 Score=61.71 Aligned_cols=33 Identities=24% Similarity=0.167 Sum_probs=26.7
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
-|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 16 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3455433 99999999999999999999886654
No 246
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.97 E-value=0.014 Score=60.81 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=28.2
Q ss_pred hhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 456 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 456 ~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+.|+.+-- +.+|+.+.|.|++|+|||||+.-++--
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34555444 999999999999999999998876654
No 247
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.017 Score=58.02 Aligned_cols=61 Identities=18% Similarity=0.113 Sum_probs=42.4
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++|.-+ .+.+ ......+.+.|++++++.+.+||+++|.... +...+|
T Consensus 147 ~~~p~llllDEPt-------~~LD-~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~------------------~~~~~d 200 (214)
T cd03297 147 AAQPELLLLDEPF-------SALD-RALRLQLLPELKQIKKNLNIPVIFVTHDLSE------------------AEYLAD 200 (214)
T ss_pred hcCCCEEEEcCCc-------ccCC-HHHHHHHHHHHHHHHHHcCcEEEEEecCHHH------------------HHHhcC
Confidence 3578999999322 2222 3345677888888888889999999994321 456778
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|.+
T Consensus 201 ~i~~l~~ 207 (214)
T cd03297 201 RIVVMED 207 (214)
T ss_pred EEEEEEC
Confidence 8888863
No 248
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.97 E-value=0.018 Score=58.86 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=27.4
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3555433 999999999999999999998876643
No 249
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.97 E-value=0.015 Score=58.47 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=25.9
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 18 l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 444433 99999999999999999999876553
No 250
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.96 E-value=0.0065 Score=63.76 Aligned_cols=33 Identities=30% Similarity=0.269 Sum_probs=27.1
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 20 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (274)
T PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG 53 (274)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3555444 99999999999999999999887664
No 251
>PRK06921 hypothetical protein; Provisional
Probab=96.96 E-value=0.008 Score=62.69 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=33.9
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005204 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
.+.-++|.|+||+|||.|+..++..+..+.|..|+|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 356789999999999999999998887654899999985
No 252
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.96 E-value=0.016 Score=63.14 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=32.4
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++|--+ ++.+ ......+.+.|++++++.+.+||+++|.
T Consensus 144 ~~~p~llLLDEPt-------s~LD-~~~~~~l~~~L~~l~~~~g~tii~vTHd 188 (352)
T PRK11144 144 LTAPELLLMDEPL-------ASLD-LPRKRELLPYLERLAREINIPILYVSHS 188 (352)
T ss_pred HcCCCEEEEcCCc-------ccCC-HHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 3578999999322 2222 2334577888888988889999999994
No 253
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.96 E-value=0.0052 Score=64.68 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=32.9
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++|--+ .+.+ ......+++.|++++++.+.+||+++|.
T Consensus 156 ~~~p~lllLDEPt-------~gLD-~~~~~~l~~~l~~l~~~~~~tilivsH~ 200 (279)
T PRK13635 156 ALQPDIIILDEAT-------SMLD-PRGRREVLETVRQLKEQKGITVLSITHD 200 (279)
T ss_pred HcCCCEEEEeCCc-------ccCC-HHHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 4678999999322 2222 3345678888888988889999999994
No 254
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.96 E-value=0.0073 Score=58.43 Aligned_cols=166 Identities=14% Similarity=0.138 Sum_probs=86.7
Q ss_pred cccccchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCH---HHHHHHHHHHHcCCCcc
Q 005204 450 GISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV---REHARKLLEKHIKKPFF 525 (709)
Q Consensus 450 gi~tg~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~---~~~~~Rl~~~~~g~~~~ 525 (709)
.++.|-+.|+++.- +++||++.|+|++|+|||||+.-+.... +-....+.+...+.+. .++ -++-+..|+-++
T Consensus 10 ~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e-~pt~G~i~~~~~dl~~l~~~~i--P~LRR~IGvVFQ 86 (223)
T COG2884 10 AYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-RPTRGKILVNGHDLSRLKGREI--PFLRRQIGVVFQ 86 (223)
T ss_pred hcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh-cCCCceEEECCeeccccccccc--chhhheeeeEee
Confidence 45567668888866 9999999999999999999977554433 2235566666555431 111 123334455444
Q ss_pred ccccCC------------CCCCCCHHHHHH----HHHHHh--cCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Q 005204 526 EANYGG------------SAERMTVEEFEQ----GKAWLS--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 587 (709)
Q Consensus 526 ~i~~g~------------~~~~l~~e~~~~----~~~~l~--~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID 587 (709)
+.+--. ...-.++.++++ +.+|+. ++...+ +.....=++-+-.|.+++ -+.|.+++=|
T Consensus 87 D~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~l---P~~LSGGEQQRvaIARAi-V~~P~vLlAD 162 (223)
T COG2884 87 DFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARAL---PSQLSGGEQQRVAIARAI-VNQPAVLLAD 162 (223)
T ss_pred eccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcC---ccccCchHHHHHHHHHHH-ccCCCeEeec
Confidence 332100 000123334433 233432 222221 111112233344444433 3578999988
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccC
Q 005204 588 PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPR 631 (709)
Q Consensus 588 ~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~r 631 (709)
-=+. .. +.....++++-+..+ ...|.+|++.+|+.
T Consensus 163 EPTG-------NL-Dp~~s~~im~lfeei-nr~GtTVl~ATHd~ 197 (223)
T COG2884 163 EPTG-------NL-DPDLSWEIMRLFEEI-NRLGTTVLMATHDL 197 (223)
T ss_pred CCCC-------CC-ChHHHHHHHHHHHHH-hhcCcEEEEEeccH
Confidence 3222 22 222233455444444 34799999999954
No 255
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.96 E-value=0.014 Score=62.16 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=27.1
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~G 52 (303)
T TIGR01288 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLG 52 (303)
T ss_pred EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3555544 99999999999999999999887654
No 256
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=96.95 E-value=0.0044 Score=64.31 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 17 VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 444433 899999999999999999998877653
No 257
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.95 E-value=0.018 Score=58.46 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.8
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+.+|+++.|.|++|+|||||+.-++-.
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 678999999999999999998876653
No 258
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.95 E-value=0.0056 Score=61.28 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=27.2
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
-|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 15 ~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444433 899999999999999999998877643
No 259
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.94 E-value=0.009 Score=60.73 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=32.5
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++|.-. .+.+ ......+.+.|++++++.+.+||+++|.
T Consensus 162 ~~~p~llllDEPt-------~~LD-~~~~~~l~~~l~~~~~~~~~tii~~sH~ 206 (228)
T PRK10584 162 NGRPDVLFADEPT-------GNLD-RQTGDKIADLLFSLNREHGTTLILVTHD 206 (228)
T ss_pred hcCCCEEEEeCCC-------CCCC-HHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 3579999999322 2222 3345577888888888889999999994
No 260
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.94 E-value=0.0088 Score=64.19 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=28.2
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+.- +.+|+++.|.|++|+|||||+.-++--
T Consensus 41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl 75 (320)
T PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4666544 999999999999999999998876643
No 261
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.94 E-value=0.019 Score=58.03 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=27.3
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
-|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444433 999999999999999999998876543
No 262
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.93 E-value=0.039 Score=60.04 Aligned_cols=142 Identities=16% Similarity=0.193 Sum_probs=95.2
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC--HHHHHHHHHHHHcCCCccccccCCCCCCCCHHHH-HH
Q 005204 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK--VREHARKLLEKHIKKPFFEANYGGSAERMTVEEF-EQ 543 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~--~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~-~~ 543 (709)
-.+++++|=-|+||||.+..||..+... |.+|+.++.+.- +..-..+.++...++++..... .-++-++ .+
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~-----~~~Pv~Iak~ 173 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKK-GKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGT-----EKDPVEIAKA 173 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHc-CCceEEEecccCChHHHHHHHHHHHHcCCceecCCC-----CCCHHHHHHH
Confidence 3589999999999999999999999995 999999999943 2222345577788888875422 2334333 44
Q ss_pred HHHHHhcC-cceEEecCCCCCCHH-HHHHHHHHHHHhcCCc--EEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005204 544 GKAWLSNT-FSLIRCENDSLPSIK-WVLDLAKAAVLRHGVR--GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 619 (709)
Q Consensus 544 ~~~~l~~~-~~~i~~~~~~~~~i~-~i~~~i~~~~~~~~~~--lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~ 619 (709)
+.+..... +-++..+.-+...+| ++.+.++.+.....|+ ++|||. +++ + +.+..-+.|-..
T Consensus 174 al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa---m~G-----Q-------dA~~~A~aF~e~ 238 (451)
T COG0541 174 ALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA---MIG-----Q-------DAVNTAKAFNEA 238 (451)
T ss_pred HHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec---ccc-----h-------HHHHHHHHHhhh
Confidence 55555442 333334555666665 5777787777666665 888883 222 1 223344556677
Q ss_pred hCcEEEEEec
Q 005204 620 HACHVWFVAH 629 (709)
Q Consensus 620 ~~i~Vi~v~h 629 (709)
.+++-++++-
T Consensus 239 l~itGvIlTK 248 (451)
T COG0541 239 LGITGVILTK 248 (451)
T ss_pred cCCceEEEEc
Confidence 8898888887
No 263
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.93 E-value=0.009 Score=60.81 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=41.3
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|.-+ .+. +......+.+.|.+++++.+.+||+++|.-. .+...+|
T Consensus 147 ~~~p~illlDEPt-------~~L-D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~------------------~~~~~~d 200 (230)
T TIGR03410 147 VTRPKLLLLDEPT-------EGI-QPSIIKDIGRVIRRLRAEGGMAILLVEQYLD------------------FARELAD 200 (230)
T ss_pred hcCCCEEEecCCc-------ccC-CHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH------------------HHHHhCC
Confidence 3578999999322 222 2333456777788888777899999999422 1456778
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.+.+
T Consensus 201 ~v~~l~~ 207 (230)
T TIGR03410 201 RYYVMER 207 (230)
T ss_pred EEEEEEC
Confidence 8888864
No 264
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.025 Score=66.50 Aligned_cols=114 Identities=13% Similarity=0.137 Sum_probs=69.9
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcC-CeEEEEECCCCH--HHHHHHHHHHHcCCCccccccCCCCCCCCHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-WKFVLCSMENKV--REHARKLLEKHIKKPFFEANYGGSAERMTVEE 540 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g-~~Vly~SlE~~~--~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~ 540 (709)
+..|+++.|.|++|+||||.+..|+..+...+| .+|++++.+-.. ..-.-+.++...++++... .++++
T Consensus 182 ~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~--------~~~~~ 253 (767)
T PRK14723 182 LAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAV--------KDAAD 253 (767)
T ss_pred cCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcccc--------CCHHH
Confidence 456889999999999999999999998865556 589999988432 1112244556667766432 25667
Q ss_pred HHHHHHHHhcC-cceEEecCCCC-CCHHHHHHHHHHHHHhcC--CcEEEEc
Q 005204 541 FEQGKAWLSNT-FSLIRCENDSL-PSIKWVLDLAKAAVLRHG--VRGLVID 587 (709)
Q Consensus 541 ~~~~~~~l~~~-~~~i~~~~~~~-~~i~~i~~~i~~~~~~~~--~~lIVID 587 (709)
+.++...+.+. .++| +..+. +.-..+.+.+..+..... -.++|+|
T Consensus 254 l~~al~~~~~~D~VLI--DTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLs 302 (767)
T PRK14723 254 LRFALAALGDKHLVLI--DTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLN 302 (767)
T ss_pred HHHHHHHhcCCCEEEE--eCCCCCccCHHHHHHHHHHhccCCCCeEEEEEC
Confidence 77766666553 3444 22331 122335555544432222 2467777
No 265
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.93 E-value=0.023 Score=57.74 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=28.1
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444433 9999999999999999999988776554
No 266
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.93 E-value=0.012 Score=62.11 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=27.6
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
-|+++-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 22 ~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~G 55 (287)
T PRK13641 22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNA 55 (287)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4555544 99999999999999999999887664
No 267
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=96.92 E-value=0.012 Score=67.91 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=28.5
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 24 ~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~ 59 (529)
T PRK15134 24 VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL 59 (529)
T ss_pred eeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4555544 9999999999999999999988776543
No 268
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.92 E-value=0.01 Score=67.77 Aligned_cols=34 Identities=26% Similarity=0.203 Sum_probs=27.8
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
-|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 18 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~ 52 (490)
T PRK10938 18 TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE 52 (490)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3555544 999999999999999999998776654
No 269
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.92 E-value=0.0069 Score=60.49 Aligned_cols=35 Identities=37% Similarity=0.580 Sum_probs=28.0
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++--.
T Consensus 22 il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred eeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 3455444 9999999999999999999988766543
No 270
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=96.91 E-value=0.019 Score=62.58 Aligned_cols=45 Identities=16% Similarity=0.247 Sum_probs=32.6
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++|--. .+. +......+.+.|++++++.+.+||+++|.
T Consensus 147 ~~~p~lllLDEPt-------s~L-D~~~~~~l~~~L~~l~~~~g~tiiivtH~ 191 (354)
T TIGR02142 147 LSSPRLLLMDEPL-------AAL-DDPRKYEILPYLERLHAEFGIPILYVSHS 191 (354)
T ss_pred HcCCCEEEEcCCC-------cCC-CHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 3578999999322 222 23344578888888988889999999993
No 271
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=96.91 E-value=0.019 Score=56.09 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=36.9
Q ss_pred cchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005204 454 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 454 g~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
....++++.- ...|+++-|.|+.|+||||++.-++.-+.-. ..+|..-+++
T Consensus 14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~-~G~v~idg~d 65 (245)
T COG4555 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD-SGKVTIDGVD 65 (245)
T ss_pred HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC-CceEEEeecc
Confidence 3345666655 9999999999999999999988776655433 4555555554
No 272
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=96.91 E-value=0.0045 Score=64.58 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=26.8
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 23 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 23 AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred eeecceEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 444433 999999999999999999998866543
No 273
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.90 E-value=0.0084 Score=60.63 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=26.4
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3444433 99999999999999999999875543
No 274
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.014 Score=57.45 Aligned_cols=175 Identities=21% Similarity=0.196 Sum_probs=94.9
Q ss_pred hhhhh-ccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC---CCHHHHHHHHHH--HHc--CCCcc--c-
Q 005204 458 LNELY-NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLE--KHI--KKPFF--E- 526 (709)
Q Consensus 458 LD~ll-~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE---~~~~~~~~Rl~~--~~~--g~~~~--~- 526 (709)
||.+- .+++||+..|.||.|+||||++..+.=.+.-. +..|.|+... .++++++++..- +.+ ..+|. +
T Consensus 17 l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~-~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eV 95 (259)
T COG4559 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD-SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEV 95 (259)
T ss_pred ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC-CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHH
Confidence 34442 39999999999999999999999887777643 5677777654 456666554311 111 11111 1
Q ss_pred cccCC---CCCCCCHHHH---HHHHH-----HHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcC----CcEEEEccCcc
Q 005204 527 ANYGG---SAERMTVEEF---EQGKA-----WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG----VRGLVIDPYNE 591 (709)
Q Consensus 527 i~~g~---~~~~l~~e~~---~~~~~-----~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~----~~lIVID~~~~ 591 (709)
++-|. ..+.-++++- ++++. -+..+.|..- ...-.+=...++-+++... .+.+++|-
T Consensus 96 V~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~L-----SGGEqQRVqlARvLaQl~~~v~~~r~L~LDE--- 167 (259)
T COG4559 96 VQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTL-----SGGEQQRVQLARVLAQLWPPVPSGRWLFLDE--- 167 (259)
T ss_pred HHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhc-----CchHHHHHHHHHHHHHccCCCCCCceEEecC---
Confidence 11110 0112211221 22221 1233333210 1111122333444444433 35889982
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 592 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 592 l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
+.+..+ -.-+..+++..++||++- +.|++|-| ..- ..++||.++.|++-+
T Consensus 168 ----PtsaLD-i~HQ~~tl~laR~la~~g-~~V~~VLHDLNL-------------------AA~YaDrivll~~Gr 218 (259)
T COG4559 168 ----PTSALD-IAHQHHTLRLARQLAREG-GAVLAVLHDLNL-------------------AAQYADRIVLLHQGR 218 (259)
T ss_pred ----Cccccc-hHHHHHHHHHHHHHHhcC-CcEEEEEccchH-------------------HHHhhheeeeeeCCe
Confidence 222222 223456888889999876 88888888 321 247889999988654
No 275
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.90 E-value=0.0092 Score=61.14 Aligned_cols=139 Identities=17% Similarity=0.192 Sum_probs=78.1
Q ss_pred chhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC---CCHHHHHHHHHHHHcCCCccccccC
Q 005204 455 WRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKPFFEANYG 530 (709)
Q Consensus 455 ~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE---~~~~~~~~Rl~~~~~g~~~~~i~~g 530 (709)
...+|++-- +.+|+..-|.|.+|+||||++.-++- +..-.+..|.|=.-+ ++.++..+++...+..+..
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~-L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl------ 98 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILG-LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGL------ 98 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHc-CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCC------
Confidence 345666544 99999999999999999999876543 322224555443222 2222333333333322221
Q ss_pred CCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHH
Q 005204 531 GSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 610 (709)
Q Consensus 531 ~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~ 610 (709)
.++ .+..-++-+ .+.. -+=+..++. ...++++||-|-....+ +.....+++
T Consensus 99 ------~~~-------~~~ryPhel----SGGQ--rQRi~IARA--Lal~P~liV~DEpvSaL--------DvSiqaqIl 149 (268)
T COG4608 99 ------PEE-------FLYRYPHEL----SGGQ--RQRIGIARA--LALNPKLIVADEPVSAL--------DVSVQAQIL 149 (268)
T ss_pred ------CHH-------HhhcCCccc----Cchh--hhhHHHHHH--HhhCCcEEEecCchhhc--------chhHHHHHH
Confidence 111 111111111 1111 111122222 23679999999444333 233456889
Q ss_pred HHHHHHHHHhCcEEEEEec
Q 005204 611 TMVKRFAQHHACHVWFVAH 629 (709)
Q Consensus 611 ~~Lk~lA~~~~i~Vi~v~h 629 (709)
.-|+.+-+++|++.++++|
T Consensus 150 nLL~dlq~~~~lt~lFIsH 168 (268)
T COG4608 150 NLLKDLQEELGLTYLFISH 168 (268)
T ss_pred HHHHHHHHHhCCeEEEEEE
Confidence 9999999999999999999
No 276
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.89 E-value=0.0076 Score=65.75 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=27.1
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 20 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 53 (362)
T TIGR03258 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAG 53 (362)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3555434 89999999999999999999887764
No 277
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.88 E-value=0.0041 Score=64.72 Aligned_cols=61 Identities=11% Similarity=0.202 Sum_probs=41.8
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++|.-. .+. +......+.+.|++++++.+.+||+++|.... +...||
T Consensus 168 ~~~p~llllDEPt-------~~L-D~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~------------------~~~~~d 221 (262)
T PRK09984 168 MQQAKVILADEPI-------ASL-DPESARIVMDTLRDINQNDGITVVVTLHQVDY------------------ALRYCE 221 (262)
T ss_pred hcCCCEEEecCcc-------ccC-CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCC
Confidence 3578999999322 222 23445678888888888789999999995321 345677
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|.+
T Consensus 222 ~i~~l~~ 228 (262)
T PRK09984 222 RIVALRQ 228 (262)
T ss_pred EEEEEEC
Confidence 7777764
No 278
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.87 E-value=0.008 Score=63.34 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=32.8
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++|.-. .+. +......+.+.|++++++.+.+||+++|.
T Consensus 159 ~~~P~llllDEPt-------~gL-D~~~~~~l~~~l~~l~~~~g~tvli~tH~ 203 (282)
T PRK13640 159 AVEPKIIILDEST-------SML-DPAGKEQILKLIRKLKKKNNLTVISITHD 203 (282)
T ss_pred HcCCCEEEEECCc-------ccC-CHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 4679999999322 222 23345678888888888889999999994
No 279
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.86 E-value=0.0044 Score=65.19 Aligned_cols=34 Identities=29% Similarity=0.264 Sum_probs=27.4
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3555544 999999999999999999998766543
No 280
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.86 E-value=0.0081 Score=62.42 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=26.7
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 899999999999999999998766653
No 281
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.86 E-value=0.026 Score=57.92 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=24.2
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+.+|+.+.|.|++|+|||||+.-++-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999998876643
No 282
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.85 E-value=0.0066 Score=57.86 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.7
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
+.+|+++.|.|++|+|||||+.-++-
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g 47 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 89999999999999999999887654
No 283
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.85 E-value=0.0067 Score=70.52 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=80.2
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC---HHHHHHHHHHHHcCCCccccccCCCCCCCCHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK---VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~---~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~ 540 (709)
-....+++|.+|.|.||||++.|++. .+.. |..|.|+|++++ +.+++.++++.+..+-. .+.++.
T Consensus 34 ~~~~RL~li~APAGfGKttl~aq~~~-~~~~-~~~v~Wlslde~dndp~rF~~yLi~al~~~~p----------~~~~~a 101 (894)
T COG2909 34 ANDYRLILISAPAGFGKTTLLAQWRE-LAAD-GAAVAWLSLDESDNDPARFLSYLIAALQQATP----------TLGDEA 101 (894)
T ss_pred CCCceEEEEeCCCCCcHHHHHHHHHH-hcCc-ccceeEeecCCccCCHHHHHHHHHHHHHHhCc----------cccHHH
Confidence 44567999999999999999999998 5554 899999999866 66777777765543311 222221
Q ss_pred HHHHHHHHhcCcceEEecCCCCCCHHHHHHHH-HHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005204 541 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLA-KAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 619 (709)
Q Consensus 541 ~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i-~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~ 619 (709)
...+..+. ..++..+++.+ ..+..-.++=++|||.|.-+-.+ .+.+-++.|-+-+=
T Consensus 102 ----~~l~q~~~---------~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~---------~l~~~l~fLl~~~P- 158 (894)
T COG2909 102 ----QTLLQKHQ---------YVSLESLLSSLLNELASYEGPLYLVLDDYHLISDP---------ALHEALRFLLKHAP- 158 (894)
T ss_pred ----HHHHHhcc---------cccHHHHHHHHHHHHHhhcCceEEEeccccccCcc---------cHHHHHHHHHHhCC-
Confidence 11222211 12344444333 33344467889999988766422 12333333332222
Q ss_pred hCcEEEEEeccC
Q 005204 620 HACHVWFVAHPR 631 (709)
Q Consensus 620 ~~i~Vi~v~h~r 631 (709)
.|++.|+++.++
T Consensus 159 ~~l~lvv~SR~r 170 (894)
T COG2909 159 ENLTLVVTSRSR 170 (894)
T ss_pred CCeEEEEEeccC
Confidence 367777777644
No 284
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.85 E-value=0.013 Score=58.53 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=26.6
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+.+.|.|++|+|||||+.-++--
T Consensus 14 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 444433 899999999999999999998876643
No 285
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.84 E-value=0.017 Score=55.41 Aligned_cols=31 Identities=39% Similarity=0.460 Sum_probs=26.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHh
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEH 494 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~ 494 (709)
+..+.+++|.|+.|+|||+++..++..+...
T Consensus 18 ~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~ 48 (162)
T cd03227 18 FGEGSLTIITGPNGSGKSTILDAIGLALGGA 48 (162)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3345699999999999999999988888765
No 286
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=96.84 E-value=0.011 Score=69.50 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=29.7
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
-|+++-+ +.+|+++.|.|++|+|||||+.-++-..
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~ 75 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS 75 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4677777 9999999999999999999988776543
No 287
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.83 E-value=0.0092 Score=65.46 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=31.8
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++++|.-+ ++. +......+...|+++.++.++++|+++|.
T Consensus 165 ~~~P~lLLLDEP~-------s~L-D~~~r~~l~~~l~~l~~~~g~tii~vTHd 209 (377)
T PRK11607 165 AKRPKLLLLDEPM-------GAL-DKKLRDRMQLEVVDILERVGVTCVMVTHD 209 (377)
T ss_pred hcCCCEEEEeCCc-------ccC-CHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 3578999999322 122 22334567778888888899999999993
No 288
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.83 E-value=0.012 Score=55.28 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.2
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
+.+|+++.|.|++|+|||||+.-++-
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 99999999999999999999876543
No 289
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.0081 Score=62.94 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=47.5
Q ss_pred HHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcc
Q 005204 576 VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINK 655 (709)
Q Consensus 576 ~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~ 655 (709)
+....++++|=|- ++.. -+...+.++++-|+++.+++|+++|+++|.=. -+.+.
T Consensus 167 ala~~P~LlIADE-------PTTA-LDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~------------------vva~~ 220 (316)
T COG0444 167 ALALNPKLLIADE-------PTTA-LDVTVQAQILDLLKELQREKGTALILITHDLG------------------VVAEI 220 (316)
T ss_pred HHhCCCCEEEeCC-------Ccch-hhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHHh
Confidence 3456899999992 2222 23445678999999999999999999999421 24578
Q ss_pred cceEEEEeeCC
Q 005204 656 CDNGIVIHRNR 666 (709)
Q Consensus 656 AD~vl~l~r~~ 666 (709)
||.|.+++.-+
T Consensus 221 aDri~VMYaG~ 231 (316)
T COG0444 221 ADRVAVMYAGR 231 (316)
T ss_pred cceEEEEECcE
Confidence 88888887543
No 290
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=96.83 E-value=0.027 Score=60.99 Aligned_cols=44 Identities=11% Similarity=0.249 Sum_probs=32.7
Q ss_pred cCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 579 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 579 ~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
.++++++.|--+ ++. +......+++.|+++.++.+++||+++|.
T Consensus 157 ~~P~iLLlDEPt-------s~L-D~~t~~~i~~lL~~l~~~~g~tiiliTH~ 200 (343)
T TIGR02314 157 SNPKVLLCDEAT-------SAL-DPATTQSILELLKEINRRLGLTILLITHE 200 (343)
T ss_pred hCCCEEEEeCCc-------ccC-CHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 578999999322 222 23344678888899999999999999993
No 291
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.82 E-value=0.01 Score=57.61 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=24.4
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+.+|+++.|.|++|+|||||+.-++-.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 899999999999999999998877654
No 292
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.82 E-value=0.0058 Score=71.94 Aligned_cols=123 Identities=9% Similarity=0.104 Sum_probs=82.2
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFE 542 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~-~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~ 542 (709)
+.+|+-..|.+|||+|||||.+-+++-+|.+ |.+++|+-.--+ +.|...|+....-+.....++.. -...|+..+.+
T Consensus 94 ~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k-gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~eke 171 (1187)
T COG1110 94 LVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK-GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKE 171 (1187)
T ss_pred HHcCCceEEEcCCCCchhHHHHHHHHHHHhc-CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHH
Confidence 8899999999999999999999999999998 888888765443 66777887655433331111111 11356777888
Q ss_pred HHHHHHhc-CcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccC
Q 005204 543 QGKAWLSN-TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQ 595 (709)
Q Consensus 543 ~~~~~l~~-~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~ 595 (709)
++.+.+.+ .+.++- .|..-+....+.+. ++++++|+||..-.++..
T Consensus 172 e~le~i~~gdfdIli------tTs~FL~k~~e~L~-~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 172 EALERIESGDFDILI------TTSQFLSKRFEELS-KLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred HHHHHHhcCCccEEE------EeHHHHHhhHHHhc-ccCCCEEEEccHHHHHhc
Confidence 88887765 333321 12222333344433 368999999987766654
No 293
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.82 E-value=0.027 Score=57.67 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 899999999999999999998876654
No 294
>PRK08727 hypothetical protein; Validated
Probab=96.81 E-value=0.0091 Score=61.06 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=32.3
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
..++|.|++|+|||.++..++..+..+ |.+|.|++++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~-~~~~~y~~~~ 78 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA-GRSSAYLPLQ 78 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEeHH
Confidence 469999999999999999988887766 9999999853
No 295
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.81 E-value=0.015 Score=65.61 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=27.2
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 40 L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 555544 999999999999999999998876643
No 296
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.81 E-value=0.003 Score=59.78 Aligned_cols=37 Identities=35% Similarity=0.583 Sum_probs=33.3
Q ss_pred EEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005204 470 TIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 470 ~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
+.+.|.+|+|||+++.+++..+... |.+|+++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~-g~~v~ii~~D~~ 38 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRAR-GKRVAVLAIDPS 38 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeCCC
Confidence 5788999999999999999988876 999999998864
No 297
>PRK08116 hypothetical protein; Validated
Probab=96.81 E-value=0.019 Score=59.93 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=32.3
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
.-++|.|++|+|||.|+..++..+..+ |.+|+|++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~~ 150 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVNF 150 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEH
Confidence 357899999999999999999999887 999999984
No 298
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.80 E-value=0.012 Score=59.87 Aligned_cols=35 Identities=17% Similarity=0.387 Sum_probs=26.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
-++|.|++|+|||++++.+..+.... ...+|+..+
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~--f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHK--FDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhccc--CCEEEEEec
Confidence 47899999999999999999886653 444444444
No 299
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.019 Score=67.45 Aligned_cols=36 Identities=31% Similarity=0.270 Sum_probs=29.3
Q ss_pred hhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 456 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 456 ~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
+.|+++-- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll 66 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL 66 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34566544 9999999999999999999988776543
No 300
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.038 Score=59.62 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=34.0
Q ss_pred HhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 577 LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 577 ~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
-..+++++|+|--+ ++.+ .....++++.|+++.++.+++||+++|.
T Consensus 173 L~~~P~llilDEPt-------s~LD-~~~~~~i~~lL~~l~~~~g~tii~itHd 218 (330)
T PRK15093 173 LANQPRLLIADEPT-------NAME-PTTQAQIFRLLTRLNQNNNTTILLISHD 218 (330)
T ss_pred HHCCCCEEEEeCCC-------CcCC-HHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 34679999999322 2222 3445678888899988899999999994
No 301
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.79 E-value=0.015 Score=56.76 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=27.6
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 18 l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred eEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 444433 9999999999999999999988776543
No 302
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.78 E-value=0.021 Score=58.59 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=27.3
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 19 l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 19 VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444433 9999999999999999999988776543
No 303
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.78 E-value=0.047 Score=55.95 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=26.8
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EeccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998877653
No 304
>PRK13768 GTPase; Provisional
Probab=96.78 E-value=0.01 Score=61.55 Aligned_cols=38 Identities=21% Similarity=0.423 Sum_probs=34.8
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
++++.|++|+||||++.+++..++.+ |.+|+++.++..
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~-g~~v~~i~~D~~ 41 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQ-GYDVAIVNLDPA 41 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhc-CCceEEEECCCc
Confidence 78999999999999999999999876 999999998854
No 305
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.0083 Score=61.24 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=27.6
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.++.+-- +.+|+++.|.|++|+|||||+.-++--.
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3444433 9999999999999999999988665443
No 306
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.77 E-value=0.012 Score=71.93 Aligned_cols=148 Identities=14% Similarity=0.192 Sum_probs=80.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhc---CCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHA---GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~---g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~ 540 (709)
+...--++|+|.||+|||+++..|++.++..+ ..++..+..-+. ++ ....+++-....- --+.++
T Consensus 1007 Lak~PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~v--EL-----s~ye~LPHl~~~V-----vtD~ek 1074 (1355)
T PRK10263 1007 LAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKML--EL-----SVYEGIPHLLTEV-----VTDMKD 1074 (1355)
T ss_pred cccCCcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCcc--ch-----hhhccCcccccee-----ecCHHH
Confidence 55556789999999999999999999988752 344555554432 21 1111221000000 001122
Q ss_pred HHHHHHHH----hcCcceEEecCCCCCCHHHHHHHHHHHHH------------------------hcCCcEEEEccCccc
Q 005204 541 FEQGKAWL----SNTFSLIRCENDSLPSIKWVLDLAKAAVL------------------------RHGVRGLVIDPYNEL 592 (709)
Q Consensus 541 ~~~~~~~l----~~~~~~i~~~~~~~~~i~~i~~~i~~~~~------------------------~~~~~lIVID~~~~l 592 (709)
..++..|+ ..+.-++.. .+-.++....+.+....+ ....-+||||.+..|
T Consensus 1075 a~~aLr~lV~EMeRRy~Lla~--~GVrnI~~YN~k~~e~~r~grp~pd~~~~~g~s~~~~~p~l~~LP~IVVIIDE~AdL 1152 (1355)
T PRK10263 1075 AANALRWCVNEMERRYKLMSA--LGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADL 1152 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHhhhccccccccccccccccccccccccCCCeEEEEEcChHHH
Confidence 22222222 122111110 122233333333222111 111238999999888
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cC
Q 005204 593 DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PR 631 (709)
Q Consensus 593 ~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~r 631 (709)
+... ...+.+.+.+|.+.++..||++|+.+| +.
T Consensus 1153 m~~~------~kevE~lI~rLAqkGRAaGIHLILATQRPs 1186 (1355)
T PRK10263 1153 MMTV------GKKVEELIARLAQKARAAGIHLVLATQRPS 1186 (1355)
T ss_pred Hhhh------hHHHHHHHHHHHHHhhhcCeEEEEEecCcc
Confidence 7521 234667888899999999999999999 54
No 307
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.011 Score=58.35 Aligned_cols=32 Identities=38% Similarity=0.607 Sum_probs=26.6
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 23 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEccEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 444433 89999999999999999999887763
No 308
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.016 Score=56.24 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=26.5
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
++.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 18 l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 18 LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 444433 999999999999999999998766553
No 309
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.76 E-value=0.016 Score=65.22 Aligned_cols=176 Identities=20% Similarity=0.161 Sum_probs=95.6
Q ss_pred chhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC--CCHHHH--HHHHHHHHcCCCcccccc
Q 005204 455 WRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME--NKVREH--ARKLLEKHIKKPFFEANY 529 (709)
Q Consensus 455 ~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE--~~~~~~--~~Rl~~~~~g~~~~~i~~ 529 (709)
...+|+.-- +.+||..-|.|.+|+||||++.-++--.-- .+..+.|..-+ ++..+. .+|-.+....-++..+.
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P-~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLn- 381 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP-SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLN- 381 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEeCcccccccchhhhhhhheEEEEeCcccccC-
Confidence 455666644 999999999999999999998865543322 35666665533 231111 11111111111111110
Q ss_pred CCCCCCCCH----------------HHHHHHHHHHhc----Cc-ceEEecCCCCCCHHHH--HHHHHHHHHhcCCcEEEE
Q 005204 530 GGSAERMTV----------------EEFEQGKAWLSN----TF-SLIRCENDSLPSIKWV--LDLAKAAVLRHGVRGLVI 586 (709)
Q Consensus 530 g~~~~~l~~----------------e~~~~~~~~l~~----~~-~~i~~~~~~~~~i~~i--~~~i~~~~~~~~~~lIVI 586 (709)
++++. .+.++...++-+ .. +.-+ +.++.+=.+- +..++ +....|++||.
T Consensus 382 ----Pr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~r--yP~elSGGQrQRvaIAR--ALa~~P~lli~ 453 (539)
T COG1123 382 ----PRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR--YPHELSGGQRQRVAIAR--ALALEPKLLIL 453 (539)
T ss_pred ----ccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhc--CchhcCcchhHHHHHHH--HHhcCCCEEEe
Confidence 01111 111111111111 10 1111 1222221221 12222 23467999999
Q ss_pred ccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 587 DPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 587 D~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
|--...+ +..-..++++-|+++-+++|++.++++|.-. .+.+.||.|.++++-+
T Consensus 454 DEp~SaL--------Dvsvqa~VlnLl~~lq~e~g~t~lfISHDl~------------------vV~~i~drv~vm~~G~ 507 (539)
T COG1123 454 DEPVSAL--------DVSVQAQVLNLLKDLQEELGLTYLFISHDLA------------------VVRYIADRVAVMYDGR 507 (539)
T ss_pred cCCcccc--------CHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH------------------HHHhhCceEEEEECCe
Confidence 9443332 2334568999999999999999999999422 3578999999998755
No 310
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.76 E-value=0.016 Score=61.78 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=26.9
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 17 ~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3555434 99999999999999999999886654
No 311
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.026 Score=57.16 Aligned_cols=171 Identities=14% Similarity=0.100 Sum_probs=86.7
Q ss_pred chhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeE--------------EEEECCCC--HHHHHHHHHH
Q 005204 455 WRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKF--------------VLCSMENK--VREHARKLLE 517 (709)
Q Consensus 455 ~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~V--------------ly~SlE~~--~~~~~~Rl~~ 517 (709)
...|+++-- +.+||++.|.|+||+||||++.-+|=-. ......| .|+-=+.. ++..+..-+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~-~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV- 93 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE-KPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNV- 93 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhh-
Confidence 445555543 9999999999999999999976544322 1112222 23322211 221111111
Q ss_pred HHcCCCccccccCCCCCCCCHHHHHHHHHHHhcC-cceEEecCCCCC--CHHHHHHHHHHHHHhcCCcEEEEccCccccc
Q 005204 518 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT-FSLIRCENDSLP--SIKWVLDLAKAAVLRHGVRGLVIDPYNELDH 594 (709)
Q Consensus 518 ~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~l~~~-~~~i~~~~~~~~--~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~ 594 (709)
..+.... + ....+....+.+++..- +--+...+.... .+.+=.+.++.+ ...++++..|-=.
T Consensus 94 -~l~l~~~----~----~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL--~~~P~lLLlDEPF---- 158 (248)
T COG1116 94 -ALGLELR----G----KSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARAL--ATRPKLLLLDEPF---- 158 (248)
T ss_pred -eehhhcc----c----cchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHH--hcCCCEEEEcCCc----
Confidence 1111111 0 11222223344444320 000000111222 233433444443 3578999999211
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEee
Q 005204 595 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664 (709)
Q Consensus 595 ~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r 664 (709)
+.. +..--..+-+.|.++.++++.+|++|+|+=.. ....||.|++|..
T Consensus 159 ---gAL-DalTR~~lq~~l~~lw~~~~~TvllVTHdi~E------------------Av~LsdRivvl~~ 206 (248)
T COG1116 159 ---GAL-DALTREELQDELLRLWEETRKTVLLVTHDVDE------------------AVYLADRVVVLSN 206 (248)
T ss_pred ---chh-hHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH------------------HHhhhCEEEEecC
Confidence 111 12222356677888999999999999995322 2468899988874
No 312
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=96.75 E-value=0.0075 Score=62.28 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=26.3
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 12 l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~G 44 (248)
T PRK03695 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAG 44 (248)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 444433 99999999999999999999886654
No 313
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=96.74 E-value=0.01 Score=52.08 Aligned_cols=80 Identities=29% Similarity=0.348 Sum_probs=51.4
Q ss_pred eEEEEcChhhHHHHHHhCC---ceEEEcCCCCCCCCCCCCCCchhh-hhhHHHHHhHhhhhcCcCEEEEEecCChhhHHH
Q 005204 295 DIIIVEGEMDKLSMEEAGF---LNCVSVPDGAPSSVSKKNVPSEEQ-DTKYQYLWNCKMYLKQASRIILATDGDPPGQAL 370 (709)
Q Consensus 295 ~viI~EG~~DaLsl~q~g~---~~~val~~G~~~~~~~~~L~~~~~-~~~~~~l~~~~~~L~~~~~Ivi~~DnD~aG~~a 370 (709)
+|+||||..|+-++.++.. ..+++ ..|...... .+.... ..+...+....+.+.+..+|++|+|.|..|+..
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~-~~Ghl~~~~---~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EGe~I 76 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIA-TSGHLLELA---KPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREGELI 76 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEE-ESSSSEEST---TSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHHHHH
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEE-eCCcccccc---cccccccccccccchhhHHHhhhccEeeecCCCChHHHHH
Confidence 4899999999999999976 33444 345442211 111000 011112233345556789999999999999999
Q ss_pred HHHHHHHh
Q 005204 371 AEELARRV 378 (709)
Q Consensus 371 a~~~a~~l 378 (709)
+..+.+.+
T Consensus 77 a~~i~~~~ 84 (100)
T PF01751_consen 77 AWEIIELL 84 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998877
No 314
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.015 Score=57.28 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=25.0
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDAL 487 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~ql 487 (709)
.|.++.- ++++.+|.+.||+|+|||||+.-+
T Consensus 22 aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~l 53 (253)
T COG1117 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCL 53 (253)
T ss_pred hhccCceeccCCceEEEECCCCcCHHHHHHHH
Confidence 3444444 899999999999999999998743
No 315
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.73 E-value=0.02 Score=59.44 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=27.2
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeE
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKF 499 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~V 499 (709)
+.+|+++.|.|++|+|||||+.-++--.... ...|
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~-~G~I 57 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPN-LGKF 57 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCC-CceE
Confidence 7899999999999999999987665554333 3444
No 316
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=96.73 E-value=0.023 Score=57.48 Aligned_cols=60 Identities=12% Similarity=0.314 Sum_probs=41.4
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|.-+. +.+ ......+...|++++++.+.+||+++|... +...||
T Consensus 157 ~~~p~illlDEP~~-------~LD-~~~~~~l~~~l~~~~~~~~~tii~~sh~~~-------------------~~~~~d 209 (220)
T TIGR02982 157 VHRPKLVLADEPTA-------ALD-SKSGRDVVELMQKLAREQGCTILIVTHDNR-------------------ILDVAD 209 (220)
T ss_pred hcCCCEEEEeCCCC-------cCC-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-------------------HHhhCC
Confidence 35789999993322 222 334457888888888878999999999521 124678
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 210 ~v~~l~~ 216 (220)
T TIGR02982 210 RIVHMED 216 (220)
T ss_pred EEEEEEC
Confidence 8888753
No 317
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.73 E-value=0.0062 Score=62.35 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=26.9
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 3455444 99999999999999999999886654
No 318
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.72 E-value=0.014 Score=59.92 Aligned_cols=34 Identities=38% Similarity=0.613 Sum_probs=27.5
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444444 999999999999999999998876654
No 319
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.72 E-value=0.0061 Score=59.56 Aligned_cols=59 Identities=27% Similarity=0.364 Sum_probs=42.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccC
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYG 530 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g 530 (709)
+++|+|..|+|||||+.+++. ....|.+++++-.|+....+-..++... +.+...+..|
T Consensus 2 v~ii~GfLGsGKTTli~~ll~--~~~~~~~~~vI~ne~g~~~iD~~~l~~~-~~~v~~l~~g 60 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK--RNRQGERVAVIVNEFGEVNIDAELLQED-GVPVVELNNG 60 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTTS-EEEEECSTTSTHHHHHHHHTT-T-EEEEECTT
T ss_pred EEEEEcCCCCCHHHHHHHHHH--HhcCCceeEEEEccccccccchhhhccc-ceEEEEecCC
Confidence 689999999999999999998 3334999999999988655555555432 5555555544
No 320
>PRK13409 putative ATPase RIL; Provisional
Probab=96.71 E-value=0.02 Score=66.68 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=42.6
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|- +..+. +......+++.|++++++.+.+||+++|.... +.+.||
T Consensus 469 ~~~p~llLLDE-------Pt~~L-D~~~~~~l~~~l~~l~~~~g~tviivsHD~~~------------------~~~~aD 522 (590)
T PRK13409 469 SRDADLYLLDE-------PSAHL-DVEQRLAVAKAIRRIAEEREATALVVDHDIYM------------------IDYISD 522 (590)
T ss_pred hcCCCEEEEeC-------CccCC-CHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH------------------HHHhCC
Confidence 46799999992 22222 23445678888999999889999999994221 345677
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.+..
T Consensus 523 rvivl~~ 529 (590)
T PRK13409 523 RLMVFEG 529 (590)
T ss_pred EEEEEcC
Confidence 7777753
No 321
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.71 E-value=0.0092 Score=59.79 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=26.6
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 555433 899999999999999999997765543
No 322
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.70 E-value=0.013 Score=61.62 Aligned_cols=34 Identities=26% Similarity=0.217 Sum_probs=27.7
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4555544 999999999999999999998866643
No 323
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.69 E-value=0.014 Score=61.00 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=27.2
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3555544 999999999999999999998765543
No 324
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.68 E-value=0.0042 Score=64.75 Aligned_cols=35 Identities=34% Similarity=0.465 Sum_probs=27.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
|++|+|.||+|||+++.+|...+... ++.|.+++-
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~-~~~v~~i~~ 37 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEK-GKEVVIISD 37 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHT-T--EEEE-T
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc-CCEEEEEcc
Confidence 89999999999999999999998876 899999983
No 325
>PLN03211 ABC transporter G-25; Provisional
Probab=96.68 E-value=0.023 Score=67.05 Aligned_cols=34 Identities=38% Similarity=0.520 Sum_probs=28.9
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
-|+++-. +++|+++.|.|++|+|||||+.-++-.
T Consensus 83 iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~ 117 (659)
T PLN03211 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGR 117 (659)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC
Confidence 4666666 999999999999999999998877643
No 326
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.66 E-value=0.06 Score=55.99 Aligned_cols=61 Identities=8% Similarity=0.058 Sum_probs=42.3
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
-.+++++++|.-+ .+. +......+.+.|+.++++.+.+||+++|... .+...||
T Consensus 166 ~~~p~vllLDEP~-------~~L-D~~~~~~l~~~l~~l~~~~~~tiiivsH~~~------------------~i~~~~d 219 (261)
T PRK14258 166 AVKPKVLLMDEPC-------FGL-DPIASMKVESLIQSLRLRSELTMVIVSHNLH------------------QVSRLSD 219 (261)
T ss_pred hcCCCEEEEeCCC-------ccC-CHHHHHHHHHHHHHHHHhCCCEEEEEECCHH------------------HHHHhcC
Confidence 3578999999322 222 2334456777888887767899999999422 2567889
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.++.|..
T Consensus 220 ~i~~l~~ 226 (261)
T PRK14258 220 FTAFFKG 226 (261)
T ss_pred EEEEEcc
Confidence 9888875
No 327
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.028 Score=64.65 Aligned_cols=175 Identities=22% Similarity=0.275 Sum_probs=92.2
Q ss_pred chhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCC----------
Q 005204 455 WRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP---------- 523 (709)
Q Consensus 455 ~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~---------- 523 (709)
.+-|+++.- ++||+.+.+.||+|+||||++. +..++-.-.+..|+.=. .+..++-.+.+....|.-
T Consensus 481 ~~Vlk~lsfti~pGe~vALVGPSGsGKSTias-LL~rfY~PtsG~IllDG--~~i~~~~~~~lr~~Ig~V~QEPvLFs~s 557 (716)
T KOG0058|consen 481 VPVLKNLSFTIRPGEVVALVGPSGSGKSTIAS-LLLRFYDPTSGRILLDG--VPISDINHKYLRRKIGLVGQEPVLFSGS 557 (716)
T ss_pred chhhcCceeeeCCCCEEEEECCCCCCHHHHHH-HHHHhcCCCCCeEEECC--eehhhcCHHHHHHHeeeeeccceeeccc
Confidence 345666655 9999999999999999999865 44444433355554321 223333333333333332
Q ss_pred -ccccccCCCCCCCCHHHHHHHH------HHHhcCcceEEec-CCC--CCC--HHHHHHHHHHHHHhcCCcEEEEccCcc
Q 005204 524 -FFEANYGGSAERMTVEEFEQGK------AWLSNTFSLIRCE-NDS--LPS--IKWVLDLAKAAVLRHGVRGLVIDPYNE 591 (709)
Q Consensus 524 -~~~i~~g~~~~~l~~e~~~~~~------~~l~~~~~~i~~~-~~~--~~~--i~~i~~~i~~~~~~~~~~lIVID~~~~ 591 (709)
...|.+|. ...++|++..+. +++.+-..-++.. ++. ..+ -.+=++.++.++ .+|.++|+|--+.
T Consensus 558 I~eNI~YG~--~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl--r~P~VLILDEATS 633 (716)
T KOG0058|consen 558 IRENIAYGL--DNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL--RNPRVLILDEATS 633 (716)
T ss_pred HHHHHhcCC--CCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh--cCCCEEEEechhh
Confidence 12345553 256778877653 3333311111110 010 111 233334444444 4789999995443
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 592 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 592 l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
..+ .++|. .+=+.|.++.++ -+|++++| ..- .+.||.|.++.+-+
T Consensus 634 ALD----aeSE~----lVq~aL~~~~~~--rTVlvIAHRLST--------------------V~~Ad~Ivvi~~G~ 679 (716)
T KOG0058|consen 634 ALD----AESEY----LVQEALDRLMQG--RTVLVIAHRLST--------------------VRHADQIVVIDKGR 679 (716)
T ss_pred hcc----hhhHH----HHHHHHHHhhcC--CeEEEEehhhhH--------------------hhhccEEEEEcCCe
Confidence 332 12221 122334444444 88999999 421 35678888887544
No 328
>PTZ00293 thymidine kinase; Provisional
Probab=96.65 E-value=0.011 Score=58.88 Aligned_cols=138 Identities=13% Similarity=0.089 Sum_probs=79.7
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHH
Q 005204 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG 544 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~ 544 (709)
..|.|.++.|+-++|||+-+++.+.+.... |.+|+.+-.-...+ . .+...-.-+.| +
T Consensus 2 ~~G~i~vi~GpMfSGKTteLLr~i~~y~~a-g~kv~~~kp~~DtR-----~----~~~~~I~Sh~g-----~-------- 58 (211)
T PTZ00293 2 YRGTISVIIGPMFSGKTTELMRLVKRFTYS-EKKCVVIKYSKDTR-----Y----SDEQNISSHDK-----Q-------- 58 (211)
T ss_pred CceEEEEEECCCCChHHHHHHHHHHHHHHc-CCceEEEEeccccc-----C----CCCCcEEecCC-----C--------
Confidence 468899999999999999888877777665 88988886543221 1 00000000000 0
Q ss_pred HHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEE
Q 005204 545 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 624 (709)
Q Consensus 545 ~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~V 624 (709)
....+.+ ..+.++.+.+ .++++|+||-... +.++..-...+ ...|++|
T Consensus 59 ----~~~a~~v-------~~~~e~~~~~------~~~dvI~IDEaQF--------------f~~i~~~~~~l-~~~g~~V 106 (211)
T PTZ00293 59 ----MLKAIKV-------SKLKEVLETA------KNYDVIAIDEGQF--------------FPDLVEFSEAA-ANLGKIV 106 (211)
T ss_pred ----cceeEEc-------CCHHHHHHhc------cCCCEEEEEchHh--------------hHhHHHHHHHH-HHCCCeE
Confidence 0000111 1233333222 4689999993322 22333333333 3689999
Q ss_pred EEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeC
Q 005204 625 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665 (709)
Q Consensus 625 i~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~ 665 (709)
++..-...-.+ .-+.++..+...||.|.-|..-
T Consensus 107 ivaGLd~Df~~--------~~F~~~~~Ll~~AD~V~kl~ai 139 (211)
T PTZ00293 107 IVAALDGTFQR--------KPFGQILNLIPLAERVTKLTAV 139 (211)
T ss_pred EEEecCccccc--------CcCccHHHHHHhhCEEEEcceE
Confidence 98776333322 1267888999999999877643
No 329
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.65 E-value=0.0073 Score=64.75 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=36.7
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCC
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQL 633 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~ 633 (709)
..++.+++||-+...++ + .....+++.|.++|++.+++++++.|....
T Consensus 523 aerpn~~~iDEF~AhLD-------~-~TA~rVArkiselaRe~giTlivvThrpEv 570 (593)
T COG2401 523 AERPNVLLIDEFAAHLD-------E-LTAVRVARKISELAREAGITLIVVTHRPEV 570 (593)
T ss_pred hcCCCcEEhhhhhhhcC-------H-HHHHHHHHHHHHHHHHhCCeEEEEecCHHH
Confidence 46789999996655542 2 223568999999999999999999995433
No 330
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.65 E-value=0.0069 Score=64.46 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=35.7
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCH
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~ 508 (709)
.+++++|.-|+||||++..+|.++|.. |.+|+.+|++-..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~-G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR-GKRTLLVSTDPAH 41 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT-TS-EEEEESSTTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC-CCCeeEeecCCCc
Confidence 378999999999999999999999997 9999999999653
No 331
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.64 E-value=0.017 Score=59.12 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=28.4
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 4555544 9999999999999999999988766543
No 332
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.63 E-value=0.017 Score=58.27 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=26.7
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444434 999999999999999999998766643
No 333
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.62 E-value=0.027 Score=62.21 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=37.4
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhc-CCeEEEEECCC--CHHHHHHHHHHHH
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSMEN--KVREHARKLLEKH 519 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~-g~~Vly~SlE~--~~~~~~~Rl~~~~ 519 (709)
..++|.|+||+|||+++..++.++.... +..++|++... +...+..+++..+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 110 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQL 110 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHh
Confidence 3578999999999999999998876652 47788887642 3444555554443
No 334
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.61 E-value=0.032 Score=56.43 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=30.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHh-cCCeEEEEECC
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEH-AGWKFVLCSME 505 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~-~g~~Vly~SlE 505 (709)
.+.|.|++|+|||.++..++..+... .+.+|+|++.+
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~ 73 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE 73 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH
Confidence 57899999999999999988888764 37889999865
No 335
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=96.60 E-value=0.007 Score=55.02 Aligned_cols=72 Identities=21% Similarity=0.294 Sum_probs=52.7
Q ss_pred CeEEEEcChhhHHHHHHhCCceEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCcCEEEEEecCChhhHHHHHH
Q 005204 294 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEE 373 (709)
Q Consensus 294 ~~viI~EG~~DaLsl~q~g~~~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~~~Ivi~~DnD~aG~~aa~~ 373 (709)
+.++||||--|..++.+++...++.+.+++-+. ... + +-+......+.|+|++|.|..|.+-++.
T Consensus 10 ~~vIVVEGK~D~~~l~~~~~~~~i~~~g~~i~~------~~~--------i-e~i~~~~~~k~VIILTD~D~~Ge~Irk~ 74 (127)
T COG1658 10 KEVIVVEGKDDTASLKRLGDAGVIITNGSAINS------LET--------I-ELIKKAQKYKGVIILTDPDRKGERIRKK 74 (127)
T ss_pred CceEEEeCCcHHHHHHHhcCCceEEEcCCccch------HHH--------H-HHHHHhhccCCEEEEeCCCcchHHHHHH
Confidence 579999999999999999988777654333221 000 0 0112223468899999999999999999
Q ss_pred HHHHhCC
Q 005204 374 LARRVGR 380 (709)
Q Consensus 374 ~a~~l~~ 380 (709)
+.+.|+.
T Consensus 75 l~~~l~~ 81 (127)
T COG1658 75 LKEYLPG 81 (127)
T ss_pred HHHHhcc
Confidence 9999865
No 336
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=96.60 E-value=0.006 Score=61.15 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=34.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHH
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 509 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~ 509 (709)
+.+..+..|+||||++.++|..++...|.+|+.+.++....
T Consensus 38 i~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~ 78 (207)
T TIGR03018 38 IMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRP 78 (207)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCCh
Confidence 44445688999999999999999974599999999997643
No 337
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.60 E-value=0.033 Score=56.09 Aligned_cols=27 Identities=22% Similarity=0.103 Sum_probs=24.0
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+.+|+++.|.|++|+|||||+.-++--
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999998766643
No 338
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.59 E-value=0.043 Score=54.49 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=26.8
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+.+.|.|++|+|||||+.-++-.
T Consensus 16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 16 FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998866553
No 339
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.59 E-value=0.03 Score=54.94 Aligned_cols=148 Identities=16% Similarity=0.083 Sum_probs=86.3
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC-----CHHHHHHHHHHHHcCCCccccccCCCCCCCCHHH
Q 005204 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-----KVREHARKLLEKHIKKPFFEANYGGSAERMTVEE 540 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~-----~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~ 540 (709)
...++.|.+++|.|||+.|+-+++.++.+ |.+|+++-|=- .....+.+ ..++.+.....+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~-G~~V~ivQFlKg~~~~GE~~~l~~----l~~v~~~~~g~~---------- 85 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH-GKKVGVVQFIKGAWSTGERNLLEF----GGGVEFHVMGTG---------- 85 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCCccCHHHHHhc----CCCcEEEECCCC----------
Confidence 34599999999999999999999999987 99999986632 22222222 223332221111
Q ss_pred HHHHHHHHhcCcceEEecCCCC---CCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHH
Q 005204 541 FEQGKAWLSNTFSLIRCENDSL---PSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFA 617 (709)
Q Consensus 541 ~~~~~~~l~~~~~~i~~~~~~~---~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA 617 (709)
+.+.. . +.. .......+.++..+.....++||+|-++..+... -. + ..+++..|+.
T Consensus 86 -----------~~~~~-~-~~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~g--li-~---~eevi~~L~~-- 144 (191)
T PRK05986 86 -----------FTWET-Q-DRERDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYG--YL-D---VEEVLEALNA-- 144 (191)
T ss_pred -----------CcccC-C-CcHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCC--Cc-c---HHHHHHHHHc--
Confidence 00100 0 000 0112234445555566779999999877665421 12 2 2345555543
Q ss_pred HHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 618 QHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 618 ~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
+--++.||++.++- +..+...||.|--+..-+
T Consensus 145 rp~~~evVlTGR~~-----------------p~~Lie~ADlVTEm~~vK 176 (191)
T PRK05986 145 RPGMQHVVITGRGA-----------------PRELIEAADLVTEMRPVK 176 (191)
T ss_pred CCCCCEEEEECCCC-----------------CHHHHHhCchheeccccc
Confidence 55678889876631 124678888887665443
No 340
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.59 E-value=0.024 Score=58.67 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=26.5
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 18 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred EeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 899999999999999999998877643
No 341
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.59 E-value=0.021 Score=66.64 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=88.7
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC---CCHHHHHHHHHHHHcCCCc---ccc--
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKPF---FEA-- 527 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE---~~~~~~~~Rl~~~~~g~~~---~~i-- 527 (709)
-|+.+-- +++|+.+.|.|++|+|||||+.-++--.--. ...|.+-..+ .+...+..+ ++....-+. ..+
T Consensus 358 il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~-~G~I~i~g~~i~~~~~~~~~~~-i~~v~Q~~~lf~~Ti~~ 435 (582)
T PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID-EGEILLDGHDLRDYTLASLRNQ-VALVSQNVHLFNDTIAN 435 (582)
T ss_pred cccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC-CceEEECCEEhhhcCHHHHHhh-ceEEccCceeecchHHH
Confidence 3555444 9999999999999999999987665543322 4445432222 222332222 222111110 111
Q ss_pred --ccCCCCCCCCHHHHHHHHHH------Hhc---CcceEEecCCCCCCHHHH--HHHHHHHHHhcCCcEEEEccCccccc
Q 005204 528 --NYGGSAERMTVEEFEQGKAW------LSN---TFSLIRCENDSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDH 594 (709)
Q Consensus 528 --~~g~~~~~l~~e~~~~~~~~------l~~---~~~~i~~~~~~~~~i~~i--~~~i~~~~~~~~~~lIVID~~~~l~~ 594 (709)
..+. ....+++++.++.+. +.. .....-.+.....+-.+- +..++.+. .+++++++|--+.-
T Consensus 436 Ni~~~~-~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall--~~~~ililDEptsa-- 510 (582)
T PRK11176 436 NIAYAR-TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALL--RDSPILILDEATSA-- 510 (582)
T ss_pred HHhcCC-CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHH--hCCCEEEEECcccc--
Confidence 1111 113577777665432 222 111111111122233332 22333332 47899999943322
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEee
Q 005204 595 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664 (709)
Q Consensus 595 ~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r 664 (709)
.+. +....+.+.|+++. .+.+||+++|.-. ....||.++.|..
T Consensus 511 -----LD~-~t~~~i~~~l~~~~--~~~tvI~VtHr~~-------------------~~~~~D~Ii~l~~ 553 (582)
T PRK11176 511 -----LDT-ESERAIQAALDELQ--KNRTSLVIAHRLS-------------------TIEKADEILVVED 553 (582)
T ss_pred -----CCH-HHHHHHHHHHHHHh--CCCEEEEEecchH-------------------HHHhCCEEEEEEC
Confidence 222 22245677777664 3699999999421 2356899999864
No 342
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.58 E-value=0.03 Score=57.28 Aligned_cols=174 Identities=16% Similarity=0.162 Sum_probs=90.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHHHHHHcCCCccccccC---------CCC
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYG---------GSA 533 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~-~~~~~~Rl~~~~~g~~~~~i~~g---------~~~ 533 (709)
+++|+++.+.|+.|+||||.+--+. -...-.+.+|-.-+.+-- ..+-+.|-+....|.-..-...- .-.
T Consensus 47 IP~G~ivgflGaNGAGKSTtLKmLT-Gll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~I 125 (325)
T COG4586 47 IPKGEIVGFLGANGAGKSTTLKMLT-GLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLI 125 (325)
T ss_pred cCCCcEEEEEcCCCCcchhhHHHHh-CccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHH
Confidence 9999999999999999999865333 222223566665555422 22222333333333322111000 000
Q ss_pred CCCCHHHHHHHHHHHhcCcce---EEecCCCCCCHHH-HHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHH
Q 005204 534 ERMTVEEFEQGKAWLSNTFSL---IRCENDSLPSIKW-VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQM 609 (709)
Q Consensus 534 ~~l~~e~~~~~~~~l~~~~~~---i~~~~~~~~~i~~-i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i 609 (709)
....++++.+-.+.+.+-+-+ ++ .+-...+..+ ....+ .+.--++++++++|--+ -+. +-.....+
T Consensus 126 y~Ipd~~F~~r~~~l~eiLdl~~~lk-~~vr~LSlGqRmraeL-aaaLLh~p~VLfLDEpT-------vgL-DV~aq~~i 195 (325)
T COG4586 126 YEIPDDEFAERLDFLTEILDLEGFLK-WPVRKLSLGQRMRAEL-AAALLHPPKVLFLDEPT-------VGL-DVNAQANI 195 (325)
T ss_pred HhCCHHHHHHHHHHHHHHhcchhhhh-hhhhhccchHHHHHHH-HHHhcCCCcEEEecCCc-------cCc-chhHHHHH
Confidence 122333444433333221100 00 0001112221 11111 11234789999999321 111 22233456
Q ss_pred HHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 610 LTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 610 ~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
-+-|+...++++++|++++|.=. .|++.||.|+.|..-+
T Consensus 196 r~Flke~n~~~~aTVllTTH~~~------------------di~~lc~rv~~I~~Gq 234 (325)
T COG4586 196 REFLKEYNEERQATVLLTTHIFD------------------DIATLCDRVLLIDQGQ 234 (325)
T ss_pred HHHHHHHHHhhCceEEEEecchh------------------hHHHhhhheEEeeCCc
Confidence 67778899999999999999411 3789999999998765
No 343
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.58 E-value=0.0067 Score=65.09 Aligned_cols=36 Identities=17% Similarity=0.381 Sum_probs=29.7
Q ss_pred cchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 454 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 454 g~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
+...+|++-- +.+||++.|-||+||||||++.-+|=
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4566777655 99999999999999999999876654
No 344
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=96.57 E-value=0.036 Score=63.84 Aligned_cols=61 Identities=20% Similarity=0.317 Sum_probs=43.2
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|--+ .+. +......+++.|++++++.+.+||+++|.... +...||
T Consensus 441 ~~~p~llllDEPt-------~~L-D~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~------------------~~~~~d 494 (529)
T PRK15134 441 ILKPSLIILDEPT-------SSL-DKTVQAQILALLKSLQQKHQLAYLFISHDLHV------------------VRALCH 494 (529)
T ss_pred hCCCCEEEeeCCc-------ccc-CHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH------------------HHHhcC
Confidence 3679999999322 222 23445678888888988889999999994221 346788
Q ss_pred eEEEEee
Q 005204 658 NGIVIHR 664 (709)
Q Consensus 658 ~vl~l~r 664 (709)
.+++|..
T Consensus 495 ~i~~l~~ 501 (529)
T PRK15134 495 QVIVLRQ 501 (529)
T ss_pred eEEEEEC
Confidence 8888863
No 345
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.56 E-value=0.014 Score=58.14 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=25.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNIN 492 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a 492 (709)
+.+|++++|+|+.|+|||||+..++....
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i~~~~~ 54 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSIGLAVL 54 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHHHHHHH
Confidence 66789999999999999999999985543
No 346
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.56 E-value=0.031 Score=56.35 Aligned_cols=184 Identities=15% Similarity=0.180 Sum_probs=94.8
Q ss_pred cchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC---CCHHHHHHHHHHHHcCCC--cccc
Q 005204 454 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKP--FFEA 527 (709)
Q Consensus 454 g~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE---~~~~~~~~Rl~~~~~g~~--~~~i 527 (709)
|+..+|+..- +.+|+++.|.||.|+||||+..=+.-.+ +-....|.|-.-+ +++.+++++=++.-.... +..+
T Consensus 16 Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~-~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~l 94 (250)
T COG0411 16 GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-KPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGL 94 (250)
T ss_pred CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc-cCCCceEEECCcccCCCCHHHHHhccceeecccccccCCC
Confidence 5667777765 9999999999999999999865433222 2223444333221 445554333211100000 0000
Q ss_pred ----------------ccCCCCCCC---CHHHHHHHHHHHhcC-cceEEecCCCCCCH--HHHHHHHHHHHHhcCCcEEE
Q 005204 528 ----------------NYGGSAERM---TVEEFEQGKAWLSNT-FSLIRCENDSLPSI--KWVLDLAKAAVLRHGVRGLV 585 (709)
Q Consensus 528 ----------------~~g~~~~~l---~~e~~~~~~~~l~~~-~~~i~~~~~~~~~i--~~i~~~i~~~~~~~~~~lIV 585 (709)
....+.... ..+..+++..+|..- +.-.....-+..+- ...++.++.+ ..++++++
T Consensus 95 TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArAL--a~~P~lLL 172 (250)
T COG0411 95 TVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARAL--ATQPKLLL 172 (250)
T ss_pred cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHH--hcCCCEEE
Confidence 000000000 112223344444320 00000001111221 2233333333 36799999
Q ss_pred EccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeC
Q 005204 586 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665 (709)
Q Consensus 586 ID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~ 665 (709)
+|- +..+.+. .+..++.+.++++.++.+++|+++-|.=+ -+.+.||.+++|..-
T Consensus 173 LDE-------PaAGln~-~e~~~l~~~i~~i~~~~g~tillIEHdM~------------------~Vm~l~dri~Vl~~G 226 (250)
T COG0411 173 LDE-------PAAGLNP-EETEELAELIRELRDRGGVTILLIEHDMK------------------LVMGLADRIVVLNYG 226 (250)
T ss_pred ecC-------ccCCCCH-HHHHHHHHHHHHHHhcCCcEEEEEEeccH------------------HHhhhccEEEeccCC
Confidence 992 2223332 34567888888888899999999999422 245788999988764
Q ss_pred C
Q 005204 666 R 666 (709)
Q Consensus 666 ~ 666 (709)
+
T Consensus 227 ~ 227 (250)
T COG0411 227 E 227 (250)
T ss_pred c
Confidence 4
No 347
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.56 E-value=0.074 Score=59.79 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=45.8
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCC-eEEEEECCCC---HHHHHHHHHHHHcCCCccc
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGW-KFVLCSMENK---VREHARKLLEKHIKKPFFE 526 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~-~Vly~SlE~~---~~~~~~Rl~~~~~g~~~~~ 526 (709)
+..|.++.|.|++|+||||.+..|+..+...+|. +|.+++.+-. ..+ ..+.++...|++...
T Consensus 253 ~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~E-QLr~~AeilGVpv~~ 318 (484)
T PRK06995 253 LDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHE-QLRIYGKILGVPVHA 318 (484)
T ss_pred ccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHH-HHHHHHHHhCCCeec
Confidence 4578899999999999999999999988765564 8999988743 112 124456666766543
No 348
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.55 E-value=0.047 Score=56.76 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=28.0
Q ss_pred cchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHH
Q 005204 454 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 454 g~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
.++.++++-- ++.|+++.+.|++|+||||++.-||
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIA 49 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIA 49 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHh
Confidence 3555665544 9999999999999999999977554
No 349
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.55 E-value=0.051 Score=62.51 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=27.9
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 16 l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 444433 9999999999999999999988777653
No 350
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=96.55 E-value=0.075 Score=55.47 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=27.5
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 35 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444433 9999999999999999999988776543
No 351
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.55 E-value=0.0081 Score=60.09 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=26.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINE 493 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~ 493 (709)
...|++++|.|++|+|||+++..++.....
T Consensus 26 ~~~~~~~~l~G~n~~GKstll~~i~~~~~l 55 (204)
T cd03282 26 RGSSRFHIITGPNMSGKSTYLKQIALLAIM 55 (204)
T ss_pred eCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 667899999999999999999988766554
No 352
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.54 E-value=0.012 Score=58.52 Aligned_cols=40 Identities=33% Similarity=0.448 Sum_probs=30.0
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHH
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 509 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~ 509 (709)
.+++|+|++|+||||++..++..+... ...-+++.|.+.+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~e~~~E 41 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTIEDPIE 41 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEEcCCcc
Confidence 389999999999999998887776543 2233456777654
No 353
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.54 E-value=0.037 Score=56.07 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=30.8
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEE
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly 501 (709)
-|+.+.- +.+|+++.|.|++|+|||||+.-++--.-- ....|.|
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~ 67 (224)
T TIGR02324 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP-DSGRILV 67 (224)
T ss_pred EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEE
Confidence 3455433 999999999999999999998866543222 2344544
No 354
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=96.53 E-value=0.0073 Score=62.63 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=36.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 507 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~ 507 (709)
+++++|.+|+|||+.+.++|..+|.. |.+|+.++++..
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~-g~~vLlvd~D~~ 39 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQ-GKKVLLVSTDPA 39 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHC-CCCceEEeCCCc
Confidence 78999999999999999999999987 999999999985
No 355
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.52 E-value=0.012 Score=63.85 Aligned_cols=45 Identities=31% Similarity=0.423 Sum_probs=32.9
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 510 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~ 510 (709)
..++++++|+|++|+||||++..++..+....+.+ +++.|.+.+.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~--i~tiEdp~E~ 163 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGH--IITIEDPIEY 163 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCE--EEEEcCChhh
Confidence 45678999999999999999988877654322334 4456877654
No 356
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.52 E-value=0.016 Score=57.78 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+.+.|.|++|+|||||+.-++-.
T Consensus 16 l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred eeccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998876654
No 357
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.51 E-value=0.019 Score=61.60 Aligned_cols=39 Identities=13% Similarity=0.213 Sum_probs=34.4
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005204 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
.+.-.+|.|+||+|||.++.-+|..+... |..|+|++..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~-g~~V~y~t~~ 220 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR-GKSVIYRTAD 220 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEEHH
Confidence 35679999999999999999999988876 9999999864
No 358
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.51 E-value=0.031 Score=58.61 Aligned_cols=33 Identities=33% Similarity=0.511 Sum_probs=26.7
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 899999999999999999998866543
No 359
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.51 E-value=0.013 Score=67.89 Aligned_cols=175 Identities=13% Similarity=0.103 Sum_probs=84.3
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC---CCHHHHHHHHHHHHcCCCc---ccccc
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKPF---FEANY 529 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE---~~~~~~~~Rl~~~~~g~~~---~~i~~ 529 (709)
.|+++-- +++|+.+.|.|++|+|||||+.-++- ........|.+-..+ .+...+.+++ +....-+. ..++.
T Consensus 338 ~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g-~~~~~~G~i~~~g~~~~~~~~~~~~~~i-~~v~q~~~lf~~ti~~ 415 (547)
T PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTG-LYQPQSGEILLDGKPVTAEQPEDYRKLF-SAVFTDFHLFDQLLGP 415 (547)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-CCCCCCeEEEECCEECCCCCHHHHhhhe-EEEecChhHHHHhhcc
Confidence 3555444 99999999999999999999865543 222223344432222 2233332221 11000000 00111
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCcceEEecC---CCCCCHHHH--HHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHH
Q 005204 530 GGSAERMTVEEFEQGKAWLSNTFSLIRCEN---DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 604 (709)
Q Consensus 530 g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~---~~~~~i~~i--~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~ 604 (709)
. ....+++++.++.+.+.-...+-..+. ....+-.+- +..++.+ -.+++++++|.-+. +.+. +
T Consensus 416 n--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal--~~~~~ililDE~ts-------~LD~-~ 483 (547)
T PRK10522 416 E--GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLAL--AEERDILLLDEWAA-------DQDP-H 483 (547)
T ss_pred c--cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEECCCC-------CCCH-H
Confidence 1 112344444444443321111100000 112232332 2222222 35799999994332 2222 2
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEee
Q 005204 605 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664 (709)
Q Consensus 605 ~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r 664 (709)
.-..+.+.|.+..++.+.+||+++|.-. ....||.++.+..
T Consensus 484 ~~~~i~~~l~~~~~~~~~tvi~itH~~~-------------------~~~~~d~i~~l~~ 524 (547)
T PRK10522 484 FRREFYQVLLPLLQEMGKTIFAISHDDH-------------------YFIHADRLLEMRN 524 (547)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEechH-------------------HHHhCCEEEEEEC
Confidence 2235666666555556899999999421 2346888888864
No 360
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.51 E-value=0.011 Score=55.77 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=29.1
Q ss_pred EEEEccCCCChHHHHHHHHHHHHHhcCCeEEEE-ECCC
Q 005204 470 TIVTGVPNSGKSEWIDALICNINEHAGWKFVLC-SMEN 506 (709)
Q Consensus 470 ~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~-SlE~ 506 (709)
+.|+|+||+||||+++.++..+... |.+|.=| +-|.
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t~EV 44 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFITPEV 44 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEeeee
Confidence 6799999999999999999887776 8887644 4444
No 361
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.51 E-value=0.028 Score=59.23 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=33.7
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
-++++.|-.|+||||-+..+|..+..+ |.+|+....+
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~~-g~~VllaA~D 176 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQQ-GKSVLLAAGD 176 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHHC-CCeEEEEecc
Confidence 499999999999999999999999877 9999988765
No 362
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=96.51 E-value=0.037 Score=55.67 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.8
Q ss_pred CCCcEEEEEccCCCChHHHHHHHH
Q 005204 465 LPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
..|++++|.|++|+||||++.-++
T Consensus 26 ~~~~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 26 DNNGLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred CccCEEEEECCCCCCHHHHHHHhe
Confidence 347899999999999999987664
No 363
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=96.51 E-value=0.13 Score=53.60 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=27.1
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 36 l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 444433 999999999999999999998877654
No 364
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.50 E-value=0.04 Score=64.73 Aligned_cols=45 Identities=9% Similarity=0.203 Sum_probs=33.5
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..+++++|+|--+ ++. +.....++++.|++++++++.+||+++|.
T Consensus 479 ~~~p~llllDEPt-------s~L-D~~~~~~i~~ll~~l~~~~g~tvi~isHd 523 (623)
T PRK10261 479 ALNPKVIIADEAV-------SAL-DVSIRGQIINLLLDLQRDFGIAYLFISHD 523 (623)
T ss_pred hcCCCEEEEeCCc-------ccC-CHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3689999999322 222 23445678888889988899999999994
No 365
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.50 E-value=0.038 Score=57.45 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=27.8
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 28 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3555433 999999999999999999998887654
No 366
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.49 E-value=0.013 Score=67.06 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=26.8
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
-|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 26 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G 59 (510)
T PRK15439 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG 59 (510)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3455444 99999999999999999999876654
No 367
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.49 E-value=0.014 Score=60.71 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=33.0
Q ss_pred cCCC-cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEE-EECCCCHHHHHHHH
Q 005204 464 VLPG-ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL-CSMENKVREHARKL 515 (709)
Q Consensus 464 l~~G-~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly-~SlE~~~~~~~~Rl 515 (709)
+.++ .+++|.|++|+|||+++..++..+... +..+.+ +....+..++...+
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~~~~~~~~~~~~~~~~l~~i 91 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLKRLDQE-RVVAAKLVNTRVDAEDLLRMV 91 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-CeEEeeeeCCCCCHHHHHHHH
Confidence 4443 489999999999999999987665432 333333 33445555555443
No 368
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.48 E-value=0.035 Score=55.33 Aligned_cols=33 Identities=36% Similarity=0.520 Sum_probs=26.9
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 21 l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 21 LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 444433 999999999999999999998876554
No 369
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.48 E-value=0.025 Score=58.27 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=26.0
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
++.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred ecceeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 444333 99999999999999999999887653
No 370
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.48 E-value=0.12 Score=53.66 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=26.9
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 28 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 444433 899999999999999999998877643
No 371
>PLN03140 ABC transporter G family member; Provisional
Probab=96.47 E-value=0.038 Score=70.60 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=29.5
Q ss_pred hhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 456 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 456 ~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.-|+++-+ +.+|+++.|.|++|+|||||+.-|+-.
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~ 929 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR 929 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCC
Confidence 34666666 999999999999999999998877654
No 372
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.47 E-value=0.046 Score=54.44 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=26.0
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+.+.|.|++|+|||||+.-++-
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (201)
T cd03231 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 444433 89999999999999999999776554
No 373
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.47 E-value=0.13 Score=53.10 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=27.1
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 20 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 444433 999999999999999999998877654
No 374
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.46 E-value=0.013 Score=61.48 Aligned_cols=34 Identities=29% Similarity=0.227 Sum_probs=27.6
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+++-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3555444 999999999999999999998877643
No 375
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.45 E-value=0.035 Score=57.25 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=27.2
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 19 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 444434 899999999999999999998877654
No 376
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.45 E-value=0.043 Score=63.85 Aligned_cols=175 Identities=21% Similarity=0.245 Sum_probs=88.9
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC---CCCHHHHHHHHHHHHcCCC-------cc
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM---ENKVREHARKLLEKHIKKP-------FF 525 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl---E~~~~~~~~Rl~~~~~g~~-------~~ 525 (709)
.|+++-- +++|+.+.|.|++|+||||++.-++.-.--+ ...+++-.. +.+...+.+++ +....-+ ..
T Consensus 344 vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~-~G~I~idg~dI~~i~~~~lr~~I-~~V~Qd~~LF~~TI~~ 421 (567)
T COG1132 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT-SGEILIDGIDIRDISLDSLRKRI-GIVSQDPLLFSGTIRE 421 (567)
T ss_pred cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCeEEECCEehhhcCHHHHHHhc-cEEcccceeecccHHH
Confidence 3555544 9999999999999999999977655443332 455555111 13333333332 2111111 01
Q ss_pred ccccCCCCCCCCHHHHHHHHH------HHhcC---cceEEecCCCCCCHH--HHHHHHHHHHHhcCCcEEEEccCccccc
Q 005204 526 EANYGGSAERMTVEEFEQGKA------WLSNT---FSLIRCENDSLPSIK--WVLDLAKAAVLRHGVRGLVIDPYNELDH 594 (709)
Q Consensus 526 ~i~~g~~~~~l~~e~~~~~~~------~l~~~---~~~i~~~~~~~~~i~--~i~~~i~~~~~~~~~~lIVID~~~~l~~ 594 (709)
.+..| ....+++++.++.+ ++... ....--+.....+-. +.+..++.+. .+++++|+|--+.-.
T Consensus 422 NI~~g--~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall--~~~~ILILDEaTSal- 496 (567)
T COG1132 422 NIALG--RPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL--RNPPILILDEATSAL- 496 (567)
T ss_pred HHhcC--CCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh--cCCCEEEEecccccc-
Confidence 22333 22367888777643 33221 111111111122222 3334444333 457999999433222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 595 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 595 ~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
+.+.-..+.+.++++.+. -++++++|.-.. +.+ ||.+++++.-+
T Consensus 497 -------D~~tE~~I~~~l~~l~~~--rT~iiIaHRlst------------------i~~-aD~IiVl~~G~ 540 (567)
T COG1132 497 -------DTETEALIQDALKKLLKG--RTTLIIAHRLST------------------IKN-ADRIIVLDNGR 540 (567)
T ss_pred -------CHHhHHHHHHHHHHHhcC--CEEEEEeccHhH------------------HHh-CCEEEEEECCE
Confidence 111123455666655533 377778883111 334 89999997544
No 377
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.44 E-value=0.018 Score=59.47 Aligned_cols=36 Identities=28% Similarity=0.524 Sum_probs=31.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
|++|+|.||+||||++.+++..+... |.+|.+++.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~-~~~v~~i~~D 36 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK-NIDVIILGTD 36 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc-CCceEEEccH
Confidence 58999999999999999999888765 8889888764
No 378
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.44 E-value=0.0046 Score=60.12 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=35.3
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005204 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
++|++++|.|.||+||||++..++..+... |..+.++..+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~-g~~v~~id~D 41 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREA-GYPVEVLDGD 41 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEcCc
Confidence 579999999999999999999999988765 8888888764
No 379
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.44 E-value=0.02 Score=58.48 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=27.4
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++--.
T Consensus 17 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 17 LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 444433 8999999999999999999988776543
No 380
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.42 E-value=0.04 Score=63.33 Aligned_cols=60 Identities=10% Similarity=0.184 Sum_probs=43.3
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccc
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 657 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD 657 (709)
..+++++++|- +..+. +......+++.|++++++++.+||+++|.... +...||
T Consensus 443 ~~~p~lLllDE-------Pt~~L-D~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~------------------~~~~~d 496 (520)
T TIGR03269 443 IKEPRIVILDE-------PTGTM-DPITKVDVTHSILKAREEMEQTFIIVSHDMDF------------------VLDVCD 496 (520)
T ss_pred hcCCCEEEEeC-------CcccC-CHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH------------------HHHhCC
Confidence 35799999993 22222 23445678888888988889999999995322 446789
Q ss_pred eEEEEe
Q 005204 658 NGIVIH 663 (709)
Q Consensus 658 ~vl~l~ 663 (709)
.++.|.
T Consensus 497 ~i~~l~ 502 (520)
T TIGR03269 497 RAALMR 502 (520)
T ss_pred EEEEEE
Confidence 888886
No 381
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.42 E-value=0.17 Score=52.23 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=26.6
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 22 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHh
Confidence 444433 99999999999999999999887764
No 382
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.42 E-value=0.017 Score=62.41 Aligned_cols=57 Identities=9% Similarity=0.256 Sum_probs=42.7
Q ss_pred ccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhc-CCeEEEEECCCCHH
Q 005204 453 TGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSMENKVR 509 (709)
Q Consensus 453 tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~-g~~Vly~SlE~~~~ 509 (709)
++...+|-++-+.+|+=.+|.|+||+|||+++.+++.++..++ +..+.|+...+..+
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~ 176 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPE 176 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCC
Confidence 4555677777688999999999999999999999999988763 22344545554433
No 383
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.41 E-value=0.022 Score=61.80 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=40.8
Q ss_pred cccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhc
Q 005204 450 GISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHA 495 (709)
Q Consensus 450 gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~ 495 (709)
..+++...+|-++-+.+|+=.+|.|+||+|||+++.+++.++..++
T Consensus 152 ~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~nh 197 (416)
T PRK09376 152 PEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTNH 197 (416)
T ss_pred CcccceeeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhhc
Confidence 3677888888888899999999999999999999999999888763
No 384
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.41 E-value=0.027 Score=61.72 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=32.2
Q ss_pred hcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec
Q 005204 578 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 629 (709)
Q Consensus 578 ~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h 629 (709)
..+++++++|--. ++. +.....++.+.|.++.++.+.+||+++|
T Consensus 180 a~~P~ILLlDEPt-------s~L-D~~~r~~l~~~L~~l~~~~~~TII~iTH 223 (382)
T TIGR03415 180 AMDADILLMDEPF-------SAL-DPLIRTQLQDELLELQAKLNKTIIFVSH 223 (382)
T ss_pred hcCCCEEEEECCC-------ccC-CHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3689999999322 222 2333457888888888888999999999
No 385
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.40 E-value=0.026 Score=64.54 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=27.2
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
-|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 53 (501)
T PRK10762 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI 53 (501)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3555544 999999999999999999998766543
No 386
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.038 Score=61.42 Aligned_cols=176 Identities=16% Similarity=0.113 Sum_probs=88.8
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC---CHHHHHHHHHHHHcCCC---cccccc
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN---KVREHARKLLEKHIKKP---FFEANY 529 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~---~~~~~~~Rl~~~~~g~~---~~~i~~ 529 (709)
.|+.+-- +.+||=+.|.|++|+||||++.-++-..--+ ...+..-..|+ ++..+.+.+ +.+.... ...+++
T Consensus 353 ~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~-~G~i~~~g~~~~~l~~~~~~e~i-~vl~Qr~hlF~~Tlr~ 430 (573)
T COG4987 353 ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ-QGSITLNGVEIASLDEQALRETI-SVLTQRVHLFSGTLRD 430 (573)
T ss_pred hhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC-CCeeeECCcChhhCChhhHHHHH-hhhccchHHHHHHHHH
Confidence 3555433 9999999999999999999987776544333 23343333332 232233333 2111111 111221
Q ss_pred C--CCCCCCCHHHHHHHHHHH------hcC---c-ceEEecCCCCCCHHHHHH-HHHHHHHhcCCcEEEEccCcccccCC
Q 005204 530 G--GSAERMTVEEFEQGKAWL------SNT---F-SLIRCENDSLPSIKWVLD-LAKAAVLRHGVRGLVIDPYNELDHQR 596 (709)
Q Consensus 530 g--~~~~~l~~e~~~~~~~~l------~~~---~-~~i~~~~~~~~~i~~i~~-~i~~~~~~~~~~lIVID~~~~l~~~~ 596 (709)
+ ...+..++|++.++.+.+ .+. . -++. +.....+=.+... .+.++- -++..++++|-=+
T Consensus 431 NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lg-e~G~~LSGGE~rRLAlAR~L-L~dapl~lLDEPT------ 502 (573)
T COG4987 431 NLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLG-EGGRRLSGGERRRLALARAL-LHDAPLWLLDEPT------ 502 (573)
T ss_pred HHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhc-cCCCcCCchHHHHHHHHHHH-HcCCCeEEecCCc------
Confidence 1 123457888877664322 111 1 1121 1111122223322 223322 3488999999222
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 597 ~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
.+.+. .--.++++.|..-++ +-++++++| -+.. ..+|.|+++..-+
T Consensus 503 -egLD~-~TE~~vL~ll~~~~~--~kTll~vTHrL~~l--------------------e~~drIivl~~Gk 549 (573)
T COG4987 503 -EGLDP-ITERQVLALLFEHAE--GKTLLMVTHRLRGL--------------------ERMDRIIVLDNGK 549 (573)
T ss_pred -ccCCh-hhHHHHHHHHHHHhc--CCeEEEEecccccH--------------------hhcCEEEEEECCe
Confidence 12221 111355666544444 778888888 4433 3568888887543
No 387
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.40 E-value=0.021 Score=69.71 Aligned_cols=152 Identities=17% Similarity=0.165 Sum_probs=81.2
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC------HHHHHHHHHHHHcCCCcccccc
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK------VREHARKLLEKHIKKPFFEANY 529 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~------~~~~~~Rl~~~~~g~~~~~i~~ 529 (709)
=|+...| +.||-||.|.|.+|+|||||+.=||-.. ...|++.|+. .++.++|....-...+.+-
T Consensus 806 LL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~------t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~--- 876 (1391)
T KOG0065|consen 806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK------TGGYIEGDILISGFPKDQETFARVSGYVEQQDIHS--- 876 (1391)
T ss_pred hhhcCceEecCCceeehhcCCCCchHHHHHHHhcCc------ccceEEeEEEECCeeCchhhhccccceeecccccC---
Confidence 3577778 9999999999999999999976555433 4456666643 2255556543322222221
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHH------HHH--------------------hcCC-c
Q 005204 530 GGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA------AVL--------------------RHGV-R 582 (709)
Q Consensus 530 g~~~~~l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~------~~~--------------------~~~~-~ 582 (709)
+.+|..|--+...+|..+..+- .+ +...-+|+|++.++. ++- .-+| -
T Consensus 877 ----~~~TVrESL~fSA~LRlp~~v~-~~-ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ 950 (1391)
T KOG0065|consen 877 ----PELTVRESLRFSAALRLPKEVS-DE-EKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSS 950 (1391)
T ss_pred ----cccchHHHHHHHHHHcCCCcCC-HH-HHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCce
Confidence 1344444433333443211000 00 000012222221110 000 0134 4
Q ss_pred EEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCC
Q 005204 583 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQ 632 (709)
Q Consensus 583 lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk 632 (709)
+|++| .+.++. +.+..-.+++.||++|. .|-+|+++.| |..
T Consensus 951 ilFLD-------EPTSGL-DsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~ 992 (1391)
T KOG0065|consen 951 ILFLD-------EPTSGL-DSQAAAIVMRFLRKLAD-TGQTILCTIHQPSI 992 (1391)
T ss_pred eEEec-------CCCCCc-cHHHHHHHHHHHHHHHh-cCCeEEEEecCCcH
Confidence 55555 333343 45556679999999998 8888888877 753
No 388
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.40 E-value=0.021 Score=61.23 Aligned_cols=40 Identities=33% Similarity=0.458 Sum_probs=35.8
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCH
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 508 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~ 508 (709)
-++.|.|+||+|||||+..++..+... |++|.+++.+.+.
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l~~~-g~~v~vi~~Dp~s 96 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHLIEQ-GHKVAVLAVDPSS 96 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeCCCc
Confidence 488999999999999999999888766 9999999998754
No 389
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.40 E-value=0.12 Score=53.25 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=23.7
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
+.+|+++.|.|++|+|||||+.-++
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14245 26 IEEKSVVAFIGPSGCGKSTFLRLFN 50 (250)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHh
Confidence 8999999999999999999988776
No 390
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.39 E-value=0.043 Score=54.56 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=26.6
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
-|+.+-- +.+|+.+.|.|++|+|||||+.-++-
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3444433 99999999999999999999886554
No 391
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.39 E-value=0.077 Score=54.73 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=26.2
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 444333 89999999999999999999887764
No 392
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.39 E-value=0.032 Score=64.34 Aligned_cols=155 Identities=21% Similarity=0.145 Sum_probs=77.2
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCcc----------
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF---------- 525 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~---------- 525 (709)
.|+++-- +++|+.+.|.|++|+||||++.-++- ........+.+-..+ ..++ ..-+....+.-.+
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g-~~~p~~G~I~i~g~~--i~~~-~~~lr~~i~~V~Q~~~lF~~TI~ 425 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTG-LLDPLQGEVTLDGVS--VSSL-QDELRRRISVFAQDAHLFDTTVR 425 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEECCEE--hhhH-HHHHHhheEEEccCcccccccHH
Confidence 3555544 99999999999999999999865543 332223445433222 2233 2222222222111
Q ss_pred -ccccCCCCCCCCHHHHHHHHHH------HhcC---cceEEecCCCCCCHHH--HHHHHHHHHHhcCCcEEEEccCcccc
Q 005204 526 -EANYGGSAERMTVEEFEQGKAW------LSNT---FSLIRCENDSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELD 593 (709)
Q Consensus 526 -~i~~g~~~~~l~~e~~~~~~~~------l~~~---~~~i~~~~~~~~~i~~--i~~~i~~~~~~~~~~lIVID~~~~l~ 593 (709)
.+..| ....+++++.++.+. +... ....-.+.....+-.+ -+..++.+. .+++++++|--+.-
T Consensus 426 eNI~~g--~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall--~~~~iliLDE~TSa- 500 (529)
T TIGR02868 426 DNLRLG--RPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALL--ADAPILLLDEPTEH- 500 (529)
T ss_pred HHHhcc--CCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHh--cCCCEEEEeCCccc-
Confidence 11222 234577777666433 2221 1111001111223232 223333332 57899999933322
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec
Q 005204 594 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 629 (709)
Q Consensus 594 ~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h 629 (709)
.+ .+.-..+.+.|.++. .+.+||+++|
T Consensus 501 ------LD-~~te~~I~~~l~~~~--~~~TvIiItH 527 (529)
T TIGR02868 501 ------LD-AGTESELLEDLLAAL--SGKTVVVITH 527 (529)
T ss_pred ------CC-HHHHHHHHHHHHHhc--CCCEEEEEec
Confidence 22 222245666666542 4689999998
No 393
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=96.38 E-value=0.062 Score=68.76 Aligned_cols=34 Identities=38% Similarity=0.630 Sum_probs=29.4
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
-|+++-+ +.+|++++|.|+||+|||||+.-++-.
T Consensus 76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~ 110 (1394)
T TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASN 110 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC
Confidence 4667667 999999999999999999998877654
No 394
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=96.38 E-value=0.0023 Score=45.69 Aligned_cols=32 Identities=38% Similarity=0.994 Sum_probs=18.8
Q ss_pred eeeecCCCCCCCCCCCceEEEEeeCCCeeEEEEeccccc
Q 005204 140 NRMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCG 178 (709)
Q Consensus 140 ~~~~CPfc~~~~~~~~s~sv~i~~~~~~~~~~Cf~~~Cg 178 (709)
.+..||.|+.+ ..|+|+.+.++ ++.|+|+. |+
T Consensus 2 ~h~pCP~CGG~----DrFri~~d~~~-~G~~~C~~--C~ 33 (40)
T PF08273_consen 2 KHGPCPICGGK----DRFRIFDDKDG-RGTWICRQ--CG 33 (40)
T ss_dssp EEE--TTTT-T----TTEEEETT-----S-EEETT--TT
T ss_pred CCCCCCCCcCc----cccccCcCccc-CCCEECCC--CC
Confidence 46799999885 56777765444 89999998 94
No 395
>PRK09183 transposase/IS protein; Provisional
Probab=96.37 E-value=0.0047 Score=64.16 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=35.7
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
+..|+.++|.|+||+|||+++..++..++.+ |..|+|++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~-G~~v~~~~~ 138 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRA-GIKVRFTTA 138 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEeH
Confidence 7789999999999999999999998777665 999999974
No 396
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.37 E-value=0.095 Score=56.51 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=27.9
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+-- +.+|+++.|.|++|+|||+|+.-++-.
T Consensus 97 ~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~ 131 (329)
T PRK14257 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQL 131 (329)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3555444 999999999999999999998877643
No 397
>PRK07773 replicative DNA helicase; Validated
Probab=96.36 E-value=0.0047 Score=75.27 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=48.7
Q ss_pred ccCchhhhcccceEEEEeeCCCC--CCCCCCeEEEEEEeeeCCCcceeeeEEEEEEccccEEEcC
Q 005204 646 ISGSAHFINKCDNGIVIHRNRDP--EAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 708 (709)
Q Consensus 646 i~GS~~i~~~AD~vl~l~r~~~~--e~~~~~~~~l~v~K~R~g~~G~~g~~~l~fd~~t~rf~~~ 708 (709)
|--...|+|.||.|++|+|++.. +....+.++++|.|+|||++|.+ .+.|++++.||.+.
T Consensus 822 ~~~hn~i~~dAD~v~~l~r~~~y~~~~~~~g~~e~ii~K~R~g~~g~~---~~~~~~~~~~f~~~ 883 (886)
T PRK07773 822 IIVHNSIEQDADVVILLYRPDYYDRDDPRGGEAEFIVAKHRNGPTGTV---TLAFQLHLSRFANL 883 (886)
T ss_pred eEecCceeccCCEEEEEechhhcCCCCCCCCceEEEEeccCCCCCceE---EEEEecCcceeecc
Confidence 33445799999999999997732 22234789999999999998875 79999999999875
No 398
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.36 E-value=0.078 Score=54.55 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=26.9
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.|+++-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3444433 99999999999999999999887664
No 399
>PRK04017 hypothetical protein; Provisional
Probab=96.36 E-value=0.0092 Score=54.58 Aligned_cols=69 Identities=25% Similarity=0.350 Sum_probs=50.7
Q ss_pred CCeEEEEcChhhHHHHHHhCCc-eEEEcCCCCCCCCCCCCCCchhhhhhHHHHHhHhhhhcCcCEEEEEecCChhhHHHH
Q 005204 293 ESDIIIVEGEMDKLSMEEAGFL-NCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALA 371 (709)
Q Consensus 293 ~~~viI~EG~~DaLsl~q~g~~-~~val~~G~~~~~~~~~L~~~~~~~~~~~l~~~~~~L~~~~~Ivi~~DnD~aG~~aa 371 (709)
.+.++||||--|.-++.++|+. +++. .+|.. +.... +. + ....+.|+|++|.|.+|.+-+
T Consensus 22 ~g~vIVVEGk~D~~~L~~lGv~~~iI~-t~g~~-------~~~~~-----e~----i--a~~~r~VIILTD~D~~GekIr 82 (132)
T PRK04017 22 AGAPIIVEGKRDVESLRKLGVEGEIIK-VSRTP-------LAEIA-----EL----I--ASRGKEVIILTDFDRKGEELA 82 (132)
T ss_pred CCCEEEEeCccHHHHHHHcCCCccEEE-ECCee-------cchHH-----HH----H--HhcCCeEEEEECCCcchHHHH
Confidence 4578999999999999999985 3443 34443 22211 00 1 246689999999999999999
Q ss_pred HHHHHHhCC
Q 005204 372 EELARRVGR 380 (709)
Q Consensus 372 ~~~a~~l~~ 380 (709)
.++.+.|..
T Consensus 83 ~~l~~~l~~ 91 (132)
T PRK04017 83 KKLSEYLQG 91 (132)
T ss_pred HHHHHHHHh
Confidence 999998844
No 400
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.36 E-value=0.023 Score=57.21 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=24.3
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+.+|+++.|.|++|+|||||+.-++--
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 899999999999999999998877653
No 401
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.36 E-value=0.026 Score=66.00 Aligned_cols=172 Identities=15% Similarity=0.111 Sum_probs=90.9
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC---CCCHHHHHHHHHHHHcCCCc-------c
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM---ENKVREHARKLLEKHIKKPF-------F 525 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl---E~~~~~~~~Rl~~~~~g~~~-------~ 525 (709)
.|+++-- +++|+.+.|.|++|+||||++.-++--. -. ...+.+-.- +.+.+.+.++ ++....-+. .
T Consensus 365 vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~-~G~I~i~g~~i~~~~~~~lr~~-i~~v~Q~~~LF~~TI~e 441 (588)
T PRK11174 365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY-QGSLKINGIELRELDPESWRKH-LSWVGQNPQLPHGTLRD 441 (588)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC-CcEEEECCEecccCCHHHHHhh-eEEecCCCcCCCcCHHH
Confidence 3555433 9999999999999999999988766655 33 344543322 2344444332 221111111 1
Q ss_pred ccccCCCCCCCCHHHHHHHHHH------HhcC---cceEEecCCCCCCHHH--HHHHHHHHHHhcCCcEEEEccCccccc
Q 005204 526 EANYGGSAERMTVEEFEQGKAW------LSNT---FSLIRCENDSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDH 594 (709)
Q Consensus 526 ~i~~g~~~~~l~~e~~~~~~~~------l~~~---~~~i~~~~~~~~~i~~--i~~~i~~~~~~~~~~lIVID~~~~l~~ 594 (709)
.+..| .+..+++++.++.+. +... ....--+.....+-.+ -+..++.+. .+++++++|.-+.-+
T Consensus 442 NI~~g--~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll--~~~~IliLDE~TSaL- 516 (588)
T PRK11174 442 NVLLG--NPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALL--QPCQLLLLDEPTASL- 516 (588)
T ss_pred HhhcC--CCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCccCC-
Confidence 12222 235788887776432 3221 1111011111222222 223333333 478999999433222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEee
Q 005204 595 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664 (709)
Q Consensus 595 ~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r 664 (709)
+ .+.-..+.+.|+++. .+.++|+++|.-. ....||.++.+..
T Consensus 517 ------D-~~te~~i~~~l~~~~--~~~TvIiItHrl~-------------------~i~~aD~Iivl~~ 558 (588)
T PRK11174 517 ------D-AHSEQLVMQALNAAS--RRQTTLMVTHQLE-------------------DLAQWDQIWVMQD 558 (588)
T ss_pred ------C-HHHHHHHHHHHHHHh--CCCEEEEEecChH-------------------HHHhCCEEEEEeC
Confidence 2 222245666676664 3688999999421 1346899999864
No 402
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.022 Score=57.85 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=28.2
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
-++.+-- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3455434 9999999999999999999988776543
No 403
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.35 E-value=0.026 Score=67.19 Aligned_cols=170 Identities=18% Similarity=0.154 Sum_probs=86.1
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC---CCHHHHHHHHHHHHcCCCc-------c
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKPF-------F 525 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE---~~~~~~~~Rl~~~~~g~~~-------~ 525 (709)
.|+++-- +++|+.+.|.|++|+||||++.-++--..-. ...|.+-.-+ .+...+.++ ++....-+. .
T Consensus 468 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~-i~~v~Q~~~lf~gTI~e 545 (686)
T TIGR03797 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE-SGSVFYDGQDLAGLDVQAVRRQ-LGVVLQNGRLMSGSIFE 545 (686)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEEcCcCCHHHHHhc-cEEEccCCccCcccHHH
Confidence 3554433 9999999999999999999876555443322 4455443322 233333322 211111110 1
Q ss_pred ccccCCCCCCCCHHHHHHHHHH------HhcCc---ceEEecCCCCCCHHH--HHHHHHHHHHhcCCcEEEEccCccccc
Q 005204 526 EANYGGSAERMTVEEFEQGKAW------LSNTF---SLIRCENDSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDH 594 (709)
Q Consensus 526 ~i~~g~~~~~l~~e~~~~~~~~------l~~~~---~~i~~~~~~~~~i~~--i~~~i~~~~~~~~~~lIVID~~~~l~~ 594 (709)
.+..+ . ..+++++.++.+. +...+ ...-.+.....+-.+ -+..++.+ -.+++++++|--+.
T Consensus 546 Ni~~~--~-~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAl--l~~p~iLiLDEpTS--- 617 (686)
T TIGR03797 546 NIAGG--A-PLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL--VRKPRILLFDEATS--- 617 (686)
T ss_pred HHhcC--C-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCcc---
Confidence 11122 1 1567776665432 22211 111001111223333 22333333 25789999993322
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEee
Q 005204 595 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664 (709)
Q Consensus 595 ~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r 664 (709)
..+. ..-..+.+.|+++ +.++|+++|.-. ....||.++.|..
T Consensus 618 ----~LD~-~te~~i~~~L~~~----~~T~IiItHr~~-------------------~i~~~D~Iivl~~ 659 (686)
T TIGR03797 618 ----ALDN-RTQAIVSESLERL----KVTRIVIAHRLS-------------------TIRNADRIYVLDA 659 (686)
T ss_pred ----CCCH-HHHHHHHHHHHHh----CCeEEEEecChH-------------------HHHcCCEEEEEEC
Confidence 2222 2223566666654 579999999311 1245899999864
No 404
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.34 E-value=0.017 Score=59.10 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=27.3
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 18 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 444433 8999999999999999999988776443
No 405
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=96.34 E-value=0.045 Score=70.01 Aligned_cols=35 Identities=31% Similarity=0.547 Sum_probs=29.4
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
-|+++.. +.+|+++.|.|++|+|||||+.-|+-..
T Consensus 778 iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~ 813 (1394)
T TIGR00956 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERV 813 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4666666 9999999999999999999988766543
No 406
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.34 E-value=0.042 Score=58.50 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=33.0
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
.-.+|.|++|+|||.++..++..++.+ |.+|.|+++.
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~-g~~v~~~~~~ 193 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKK-GVSSTLLHFP 193 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEEHH
Confidence 457899999999999999999999976 9999999763
No 407
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.34 E-value=0.065 Score=58.43 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=26.6
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+++-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl 42 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL 42 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 444433 999999999999999999998766543
No 408
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=96.33 E-value=0.17 Score=52.91 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=24.0
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
+.+|+++.|.|++|+|||||+.-++-
T Consensus 48 i~~Ge~~~I~G~nGsGKSTLl~~laG 73 (272)
T PRK14236 48 IPKNRVTAFIGPSGCGKSTLLRCFNR 73 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 89999999999999999999887764
No 409
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.32 E-value=0.054 Score=52.22 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=26.8
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 444433 899999999999999999998876654
No 410
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.30 E-value=0.055 Score=54.01 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=26.4
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 17 FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred EecceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998765543
No 411
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.30 E-value=0.024 Score=65.06 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=26.9
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+++-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 21 l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 54 (510)
T PRK09700 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI 54 (510)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 455444 999999999999999999998766543
No 412
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.30 E-value=0.017 Score=62.84 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=42.5
Q ss_pred cchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcC--CeEEEEECC--CCHHHHHHHH
Q 005204 454 GWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAG--WKFVLCSME--NKVREHARKL 515 (709)
Q Consensus 454 g~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g--~~Vly~SlE--~~~~~~~~Rl 515 (709)
+...+|-.+-+.+|+.++|.|+||+|||+++..++..+..++- ..+++++-| ..+.++.+.+
T Consensus 155 ~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsI 220 (415)
T TIGR00767 155 STRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSV 220 (415)
T ss_pred ceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHh
Confidence 4455566666999999999999999999999988887766521 224444434 3444554444
No 413
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.27 E-value=0.16 Score=52.50 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=26.8
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred ecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 444433 999999999999999999998876543
No 414
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.27 E-value=0.042 Score=55.49 Aligned_cols=34 Identities=32% Similarity=0.381 Sum_probs=27.6
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3555434 999999999999999999998876644
No 415
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.27 E-value=0.042 Score=52.47 Aligned_cols=142 Identities=16% Similarity=0.167 Sum_probs=77.5
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhc-CCeEEEEECCCC-HHHHHHHHHHHHcCC--CccccccCCCCCCCCHHHH
Q 005204 466 PGELTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSMENK-VREHARKLLEKHIKK--PFFEANYGGSAERMTVEEF 541 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~-g~~Vly~SlE~~-~~~~~~Rl~~~~~g~--~~~~i~~g~~~~~l~~e~~ 541 (709)
.|+-.++.|++|+|||+.+.-.+++...+. ...++|+..... .++...++....... ....+ .+ ..+..
T Consensus 13 ~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~----~~~~~-- 85 (169)
T PF00270_consen 13 SGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLL-HG----GQSIS-- 85 (169)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEE-ST----TSCHH--
T ss_pred cCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccc-cc----ccccc--
Confidence 567799999999999999998888877652 237888887644 445555554443331 11211 11 22221
Q ss_pred HHHHHHHhc-CcceEEecCCCCCCHHHHHHHHHHHH-HhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 005204 542 EQGKAWLSN-TFSLIRCENDSLPSIKWVLDLAKAAV-LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 619 (709)
Q Consensus 542 ~~~~~~l~~-~~~~i~~~~~~~~~i~~i~~~i~~~~-~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~ 619 (709)
.....++.. ..+++ .|++.+...+.... .-..+++||||-...+... .....+..+++.++. .
T Consensus 86 ~~~~~~~~~~~~ilv-------~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-----~~~~~~~~i~~~~~~---~ 150 (169)
T PF00270_consen 86 EDQREVLSNQADILV-------TTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-----TFRAMLKSILRRLKR---F 150 (169)
T ss_dssp HHHHHHHHTTSSEEE-------EEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-----THHHHHHHHHHHSHT---T
T ss_pred ccccccccccccccc-------cCcchhhccccccccccccceeeccCcccccccc-----cHHHHHHHHHHHhcC---C
Confidence 112233332 33333 24565555554310 1133899999966655431 122233334433322 2
Q ss_pred hCcEEEEEec
Q 005204 620 HACHVWFVAH 629 (709)
Q Consensus 620 ~~i~Vi~v~h 629 (709)
.++.+++++-
T Consensus 151 ~~~~~i~~SA 160 (169)
T PF00270_consen 151 KNIQIILLSA 160 (169)
T ss_dssp TTSEEEEEES
T ss_pred CCCcEEEEee
Confidence 2688888776
No 416
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.26 E-value=0.16 Score=52.32 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=26.4
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 20 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14270 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 444333 89999999999999999999887764
No 417
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.12 Score=53.86 Aligned_cols=158 Identities=18% Similarity=0.171 Sum_probs=88.7
Q ss_pred cchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHh-cCCeEEEEE---CCCCHHHHHHHHHHHHcCCCccccc
Q 005204 454 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEH-AGWKFVLCS---MENKVREHARKLLEKHIKKPFFEAN 528 (709)
Q Consensus 454 g~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~-~g~~Vly~S---lE~~~~~~~~Rl~~~~~g~~~~~i~ 528 (709)
.+..||+.-- +++|+++-|.|++|+||||++. +.+.... ....|.+-. ...+...+ |-..+..|+-++...
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR--~iN~Le~PtsG~v~v~G~di~~l~~~~L--r~~R~~IGMIFQhFn 93 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLR--LINLLERPTSGSVFVDGQDLTALSEAEL--RQLRQKIGMIFQHFN 93 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHH--HHhccCCCCCceEEEcCEecccCChHHH--HHHHhhccEEecccc
Confidence 4567777655 9999999999999999999976 2333322 355676665 33443332 333333444333221
Q ss_pred c------------CCCCCCCCHHHHHH-HHHHHh-----cCcceEEecCCCCCC--HHHHHHHHHHHHHhcCCcEEEEcc
Q 005204 529 Y------------GGSAERMTVEEFEQ-GKAWLS-----NTFSLIRCENDSLPS--IKWVLDLAKAAVLRHGVRGLVIDP 588 (709)
Q Consensus 529 ~------------g~~~~~l~~e~~~~-~~~~l~-----~~~~~i~~~~~~~~~--i~~i~~~i~~~~~~~~~~lIVID~ 588 (709)
- .-....++.++.++ ..+++. ++..-+ ..+.+ -.+-...++.+ ..+|++++-|-
T Consensus 94 LLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~y----P~qLSGGQKQRVaIARAL--a~~P~iLL~DE 167 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRY----PAQLSGGQKQRVAIARAL--ANNPKILLCDE 167 (339)
T ss_pred ccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccC----chhcCcchhhHHHHHHHH--hcCCCEEEecC
Confidence 0 00001133333332 233322 111111 11111 23444444444 36799999995
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec
Q 005204 589 YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 629 (709)
Q Consensus 589 ~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h 629 (709)
-+..++ .+--..+++-|+.+-+++|++|++++|
T Consensus 168 aTSALD--------P~TT~sIL~LL~~In~~lglTIvlITH 200 (339)
T COG1135 168 ATSALD--------PETTQSILELLKDINRELGLTIVLITH 200 (339)
T ss_pred ccccCC--------hHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 443332 233467899999999999999999999
No 418
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.25 E-value=0.044 Score=64.61 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=27.8
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
|+++-- +.+|+.+.|.|++|+|||||+.-++-..
T Consensus 328 l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 362 (638)
T PRK10636 328 LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL 362 (638)
T ss_pred eccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 454434 9999999999999999999988777543
No 419
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.25 E-value=0.065 Score=55.15 Aligned_cols=33 Identities=36% Similarity=0.435 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 17 LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 444433 899999999999999999998866654
No 420
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.25 E-value=0.043 Score=62.90 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=26.9
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 311 (510)
T PRK15439 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYG 311 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 555543 99999999999999999999877664
No 421
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.25 E-value=0.067 Score=52.55 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=24.1
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHH-hcCCeE
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINE-HAGWKF 499 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~-~~g~~V 499 (709)
+++|+|+.++|||+|+.+++..... +.|..|
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v 32 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFV 32 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCe
Confidence 4689999999999999999966653 335544
No 422
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24 E-value=0.047 Score=54.72 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=25.5
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
-|+.+-- +.+| ++.|.|++|+|||||+.-++-
T Consensus 15 ~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhC
Confidence 3444433 8889 999999999999999887664
No 423
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.24 E-value=0.014 Score=60.04 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=40.9
Q ss_pred hhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCC-e-EEEEECC--CCHHHHHHHH
Q 005204 457 ALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGW-K-FVLCSME--NKVREHARKL 515 (709)
Q Consensus 457 ~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~-~-Vly~SlE--~~~~~~~~Rl 515 (709)
.+|-++.+.+|+-++|.|++|+|||+++..++.++..+++. . +++++.| ....++.+.+
T Consensus 6 ~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 6 VVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred heeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh
Confidence 35556668899999999999999999998888777554222 2 3344555 4455555444
No 424
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.005 Score=63.92 Aligned_cols=124 Identities=16% Similarity=0.182 Sum_probs=70.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEE-EECCCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL-CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFE 542 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly-~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~ 542 (709)
+.-..|+++.||||+|||+++-.+|-++.-+...+--| .-.|.+...++.++.+
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFs------------------------- 228 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFS------------------------- 228 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHh-------------------------
Confidence 66678999999999999999988887776431111000 0124444444444432
Q ss_pred HHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCC-cEEEEccCcccccCC----CC--CCCHHHHHHHHHHHHHH
Q 005204 543 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV-RGLVIDPYNELDHQR----PV--SQTETEYVSQMLTMVKR 615 (709)
Q Consensus 543 ~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~-~lIVID~~~~l~~~~----~~--~~~~~~~~~~i~~~Lk~ 615 (709)
+ +.-.+..+.+.|..++...|+ =.|.||-.-.+-... .+ ..+.-+.+..++.+|.+
T Consensus 229 -------E----------SgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr 291 (423)
T KOG0744|consen 229 -------E----------SGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR 291 (423)
T ss_pred -------h----------hhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH
Confidence 1 111133334444444443332 244455332222111 00 11233567789999999
Q ss_pred HHHHhCcEEEEEec
Q 005204 616 FAQHHACHVWFVAH 629 (709)
Q Consensus 616 lA~~~~i~Vi~v~h 629 (709)
+-+..|+.+++++.
T Consensus 292 lK~~~NvliL~TSN 305 (423)
T KOG0744|consen 292 LKRYPNVLILATSN 305 (423)
T ss_pred hccCCCEEEEeccc
Confidence 99999998888887
No 425
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.24 E-value=0.052 Score=55.98 Aligned_cols=32 Identities=13% Similarity=0.339 Sum_probs=26.2
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 19 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 444433 89999999999999999999886663
No 426
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.24 E-value=0.081 Score=54.90 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=26.5
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 28 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 444433 99999999999999999999887764
No 427
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.062 Score=57.98 Aligned_cols=151 Identities=15% Similarity=0.185 Sum_probs=80.0
Q ss_pred ccccccchhhhhhhc-----cCCCcEEEEEccCCCChHHHHHHHHHHHHHh-------cCCeEEEE--------ECCCCH
Q 005204 449 FGISTGWRALNELYN-----VLPGELTIVTGVPNSGKSEWIDALICNINEH-------AGWKFVLC--------SMENKV 508 (709)
Q Consensus 449 ~gi~tg~~~LD~ll~-----l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~-------~g~~Vly~--------SlE~~~ 508 (709)
.++.+|++.-+-++. +....-+.|.||.|+|||||+.-+.-.+--+ |-.+|.|| ..|+++
T Consensus 590 H~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp 669 (807)
T KOG0066|consen 590 HDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETP 669 (807)
T ss_pred ccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCH
Confidence 355677877666654 4555778999999999999988766544322 23556666 345555
Q ss_pred HHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHHHHH--HhcCcceEEe-cCCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 005204 509 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAW--LSNTFSLIRC-ENDSLPSIKWVLDLAKAAVLRHGVRGLV 585 (709)
Q Consensus 509 ~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~~~~--l~~~~~~i~~-~~~~~~~i~~i~~~i~~~~~~~~~~lIV 585 (709)
.+...|. ...++ ++.++.... |..+.+.|.. +-.+..-.. +. +..+ .-.+++++|
T Consensus 670 ~EyLqr~----FNlpy--------------q~ARK~LG~fGL~sHAHTikikdLSGGQKaR--Va-laeL-al~~PDvlI 727 (807)
T KOG0066|consen 670 VEYLQRK----FNLPY--------------QEARKQLGTFGLASHAHTIKIKDLSGGQKAR--VA-LAEL-ALGGPDVLI 727 (807)
T ss_pred HHHHHHh----cCCCh--------------HHHHHHhhhhhhhhccceEeeeecCCcchHH--HH-HHHH-hcCCCCEEE
Confidence 5554443 23322 222222111 2223333322 111111111 11 1111 235799999
Q ss_pred EccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCC
Q 005204 586 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQL 633 (709)
Q Consensus 586 ID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~ 633 (709)
+|.-+.- -+-+ -+..|..-..+|+-.||+|+| .|-.
T Consensus 728 LDEPTNN--------LDIE----SIDALaEAIney~GgVi~VsHDeRLi 764 (807)
T KOG0066|consen 728 LDEPTNN--------LDIE----SIDALAEAINEYNGGVIMVSHDERLI 764 (807)
T ss_pred ecCCCCC--------cchh----hHHHHHHHHHhccCcEEEEeccccee
Confidence 9932211 1222 233444455789999999999 5543
No 428
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.23 E-value=0.0059 Score=55.23 Aligned_cols=29 Identities=31% Similarity=0.572 Sum_probs=24.0
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEE
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly 501 (709)
+++|.|+||+||||++.+|+..+ |.+++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~----~~~~i~ 29 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL----GFPVIS 29 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH----TCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCeEEE
Confidence 47899999999999999888765 666653
No 429
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.23 E-value=0.0079 Score=64.20 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.8
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
+..||+++|.||+|+||||++.-+|
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 8999999999999999999987554
No 430
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.23 E-value=0.024 Score=66.85 Aligned_cols=176 Identities=20% Similarity=0.191 Sum_probs=91.6
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccc-------cc
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE-------AN 528 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~-------i~ 528 (709)
.|+++-- +++|+.+.|.|++|+||||++.-+.--.-- ....+.+=..+.+ ++-.+-+.+..|+-.++ ++
T Consensus 488 vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p-~~G~I~~dg~dl~--~i~~~~lR~~ig~V~Q~~~Lf~gSI~ 564 (709)
T COG2274 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP-QQGRILLDGVDLN--DIDLASLRRQVGYVLQDPFLFSGSIR 564 (709)
T ss_pred hhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEeHH--hcCHHHHHhheeEEcccchhhcCcHH
Confidence 4555433 999999999999999999997654432222 2344554433322 22222222222322111 11
Q ss_pred cC--CCCCCCCHHHHHHHH------HHHhcCcceEE---ecCCCCCC--HHHHHHHHHHHHHhcCCcEEEEccCcccccC
Q 005204 529 YG--GSAERMTVEEFEQGK------AWLSNTFSLIR---CENDSLPS--IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQ 595 (709)
Q Consensus 529 ~g--~~~~~l~~e~~~~~~------~~l~~~~~~i~---~~~~~~~~--i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~ 595 (709)
++ ......+.|++.++. +.+...+.=+. -+.....+ -.+.+..++.+ -.+++++++|--+.-+
T Consensus 565 eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaL--l~~P~ILlLDEaTSaL-- 640 (709)
T COG2274 565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL--LSKPKILLLDEATSAL-- 640 (709)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHh--ccCCCEEEEeCccccc--
Confidence 11 122345656665543 33333221110 01111112 23444444443 3679999999332222
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 596 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 596 ~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
+.+.-..+.+.|.++.+ ++++|+++|... ....||.+++++..+
T Consensus 641 ------D~~sE~~I~~~L~~~~~--~~T~I~IaHRl~-------------------ti~~adrIiVl~~Gk 684 (709)
T COG2274 641 ------DPETEAIILQNLLQILQ--GRTVIIIAHRLS-------------------TIRSADRIIVLDQGK 684 (709)
T ss_pred ------CHhHHHHHHHHHHHHhc--CCeEEEEEccch-------------------HhhhccEEEEccCCc
Confidence 12223467777777664 488999999422 235789999988665
No 431
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.21 E-value=0.015 Score=60.11 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=76.2
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHh-cCCeEEEEECCC---CHHHHHHHHHHHHcCCCccccccCC---CCCCCCHHHH
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEH-AGWKFVLCSMEN---KVREHARKLLEKHIKKPFFEANYGG---SAERMTVEEF 541 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~-~g~~Vly~SlE~---~~~~~~~Rl~~~~~g~~~~~i~~g~---~~~~l~~e~~ 541 (709)
+.+|.||+|+|||.|+.++...-..+ ....|.||+.|- ++++....-.+.. .-.+.--..|+ ....+.++-+
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~-EgNY~~~~~gTi~P~t~t~~P~Fv 167 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLC-EGNYDCGPDGTIVPQTGTFRPKFV 167 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHH-hcCCCCCCCCeeccccccccccce
Confidence 88999999999999999887654433 367799999983 4666554433322 21121111110 1123333222
Q ss_pred HHHHHHH-hcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHH-HHHHHHHHH
Q 005204 542 EQGKAWL-SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQML-TMVKRFAQH 619 (709)
Q Consensus 542 ~~~~~~l-~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~-~~Lk~lA~~ 619 (709)
+-..+.+ .+..+=+ .+.+.|... +.+.|+=.||+|--|+-+.+ ..+-....-++= +-..++++=
T Consensus 168 ~msy~e~t~~~NldI-------~~p~NiF~~----Aa~~GPiaIImDECMe~Lg~---~~~is~fFHAlPSKL~~rfp~C 233 (369)
T PF02456_consen 168 EMSYDEATSPENLDI-------TNPNNIFAQ----AAKKGPIAIIMDECMEKLGS---HKSISKFFHALPSKLHDRFPKC 233 (369)
T ss_pred eecHhhhCCccccCC-------CCchHHHHH----HHhcCCEEEEhHHHHHHhcC---CCChhHHHhcCcHHHhhhccCC
Confidence 2222221 1111111 122344333 24578999999955543332 122222222222 223447777
Q ss_pred hCcEEEEEec
Q 005204 620 HACHVWFVAH 629 (709)
Q Consensus 620 ~~i~Vi~v~h 629 (709)
++..|++|-|
T Consensus 234 Tgy~VfVVLH 243 (369)
T PF02456_consen 234 TGYYVFVVLH 243 (369)
T ss_pred ceeEEEEEec
Confidence 8899999999
No 432
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.21 E-value=0.016 Score=58.62 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.8
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHH
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINE 493 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~ 493 (709)
++++|.|++|+|||+|+..++.....
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l 56 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALL 56 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHH
Confidence 79999999999999999999865543
No 433
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=96.21 E-value=0.0063 Score=59.05 Aligned_cols=49 Identities=29% Similarity=0.483 Sum_probs=35.8
Q ss_pred cchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE
Q 005204 454 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 503 (709)
Q Consensus 454 g~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S 503 (709)
||..|+++.- +.+|+|-+|.||.|+|||||+--+.-..-- ....|+|-.
T Consensus 17 GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp-~~G~v~f~g 66 (249)
T COG4674 17 GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP-QEGEVLFDG 66 (249)
T ss_pred ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC-CcceEEEcC
Confidence 7888888877 999999999999999999997544332211 134555544
No 434
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.19 E-value=0.031 Score=56.72 Aligned_cols=34 Identities=32% Similarity=0.417 Sum_probs=27.6
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 29 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3555544 999999999999999999998866543
No 435
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.19 E-value=0.032 Score=64.31 Aligned_cols=44 Identities=25% Similarity=0.356 Sum_probs=31.1
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEE
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 501 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly 501 (709)
-|+++-- +++|+.+.|.|++|+|||||+.-++--.--. ...|.+
T Consensus 337 il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~I~~ 381 (529)
T TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT-EGSIAV 381 (529)
T ss_pred cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEE
Confidence 3555544 9999999999999999999977665433222 345544
No 436
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.18 E-value=0.096 Score=53.17 Aligned_cols=163 Identities=16% Similarity=0.117 Sum_probs=80.6
Q ss_pred cchhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC---CCCHHHHHHHHHHHHcCCCcc---c
Q 005204 454 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM---ENKVREHARKLLEKHIKKPFF---E 526 (709)
Q Consensus 454 g~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl---E~~~~~~~~Rl~~~~~g~~~~---~ 526 (709)
+...+|++.- +..|+++++.|++|+||||++. |...+.......+++..- ++++.++.+++=....+..+. .
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLk-MINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~T 91 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLK-MINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLT 91 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHH-HHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCcc
Confidence 3445666655 9999999999999999998754 455555443344443322 244666666653333333221 1
Q ss_pred cccC-C---CCCCCCHHHHHHHHH----HHhcCc--ceEEecCCCCCC--HHHHHHHHHHHHHhcCCcEEEEccCccccc
Q 005204 527 ANYG-G---SAERMTVEEFEQGKA----WLSNTF--SLIRCENDSLPS--IKWVLDLAKAAVLRHGVRGLVIDPYNELDH 594 (709)
Q Consensus 527 i~~g-~---~~~~l~~e~~~~~~~----~l~~~~--~~i~~~~~~~~~--i~~i~~~i~~~~~~~~~~lIVID~~~~l~~ 594 (709)
+.++ . .-..-+.++.++-.+ .+.-.. +.-+ +....+ -.+=+-.++.++ .++.++..|-=...++
T Consensus 92 v~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~R--yP~eLSGGQQQRVGv~RALA--adP~ilLMDEPFgALD 167 (309)
T COG1125 92 VAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADR--YPHELSGGQQQRVGVARALA--ADPPILLMDEPFGALD 167 (309)
T ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhc--CchhcCcchhhHHHHHHHHh--cCCCeEeecCCccccC
Confidence 1100 0 000112222222111 111111 1111 111111 122233344433 4678888883222221
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec
Q 005204 595 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 629 (709)
Q Consensus 595 ~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h 629 (709)
+ .++ .++-..++++-++++.+||+|+|
T Consensus 168 p----I~R----~~lQ~e~~~lq~~l~kTivfVTH 194 (309)
T COG1125 168 P----ITR----KQLQEEIKELQKELGKTIVFVTH 194 (309)
T ss_pred h----hhH----HHHHHHHHHHHHHhCCEEEEEec
Confidence 1 122 24455677788999999999999
No 437
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.18 E-value=0.031 Score=66.66 Aligned_cols=174 Identities=17% Similarity=0.154 Sum_probs=87.3
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC---CCHHHHHHHHHHHHcCCC---ccccccC
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKP---FFEANYG 530 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE---~~~~~~~~Rl~~~~~g~~---~~~i~~g 530 (709)
|+.+-- +++|+.+.|.|++|+||||++.-++-..--. ...|.+-..+ .+...+.+++ +.....+ ...++++
T Consensus 473 l~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~-~G~I~idg~~i~~~~~~~~r~~i-~~v~q~~~lf~~ti~eN 550 (694)
T TIGR01846 473 LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ-HGQVLVDGVDLAIADPAWLRRQM-GVVLQENVLFSRSIRDN 550 (694)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEehhhCCHHHHHHhC-eEEccCCeehhhhHHHH
Confidence 444433 9999999999999999999877655543332 4445443222 2233332221 1100000 0001110
Q ss_pred --CCCCCCCHHHHHHHHHH------HhcC---cceEEecCCCCCCHHHH--HHHHHHHHHhcCCcEEEEccCcccccCCC
Q 005204 531 --GSAERMTVEEFEQGKAW------LSNT---FSLIRCENDSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 597 (709)
Q Consensus 531 --~~~~~l~~e~~~~~~~~------l~~~---~~~i~~~~~~~~~i~~i--~~~i~~~~~~~~~~lIVID~~~~l~~~~~ 597 (709)
......+++++.++.+. +... ....-.+.....+-.+- +..++.+ -.+++++++|.-+.
T Consensus 551 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARal--l~~~~ililDEpts------ 622 (694)
T TIGR01846 551 IALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARAL--VGNPRILIFDEATS------ 622 (694)
T ss_pred HhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHH--HhCCCEEEEECCCc------
Confidence 01124566776655332 2221 11111111222333332 2333333 35789999994332
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEee
Q 005204 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664 (709)
Q Consensus 598 ~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r 664 (709)
+.+ .+.-..+.+.|+++. .+.++|+++|.-.. + ..||.++.+..
T Consensus 623 -~LD-~~~~~~i~~~l~~~~--~~~t~i~itH~~~~------------------~-~~~d~ii~l~~ 666 (694)
T TIGR01846 623 -ALD-YESEALIMRNMREIC--RGRTVIIIAHRLST------------------V-RACDRIIVLEK 666 (694)
T ss_pred -CCC-HHHHHHHHHHHHHHh--CCCEEEEEeCChHH------------------H-HhCCEEEEEeC
Confidence 222 222345677777664 47899999994211 2 35899988864
No 438
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.18 E-value=0.0072 Score=59.09 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=32.2
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 504 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl 504 (709)
+..|.=.+|.|+||+|||.+|..++..++.. |.+|+|++.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~~v~f~~~ 83 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRK-GYSVLFITA 83 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccC-CcceeEeec
Confidence 6678889999999999999999999999886 999999974
No 439
>COG1158 Rho Transcription termination factor [Transcription]
Probab=96.18 E-value=0.027 Score=58.91 Aligned_cols=48 Identities=13% Similarity=0.245 Sum_probs=39.5
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC-CCCHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM-ENKVREH 511 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl-E~~~~~~ 511 (709)
+.+|+=.+|.+||.+|||+++.++|..++.+|....+++-+ ++.++++
T Consensus 170 IGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEV 218 (422)
T COG1158 170 IGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEV 218 (422)
T ss_pred cCCCceeeEecCCCCCchHHHHHHHHHHhcCCCceEEEEEEecCCchHH
Confidence 88999999999999999999999999999987665555544 5556654
No 440
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.17 E-value=0.052 Score=56.93 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=28.2
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 491 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~ 491 (709)
.|+++-- +.+|+++.|.|++|+|||||+.-++--.
T Consensus 19 ~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 3555444 9999999999999999999988776554
No 441
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=96.17 E-value=0.0028 Score=44.39 Aligned_cols=32 Identities=28% Similarity=0.752 Sum_probs=23.9
Q ss_pred eeecCCCCCCCCCCCceEEEEeeCCCeeEEEEeccccccc
Q 005204 141 RMLCPKCNGGDSEELSLSLFLDEDGFSAVWMCFRAKCGWK 180 (709)
Q Consensus 141 ~~~CPfc~~~~~~~~s~sv~i~~~~~~~~~~Cf~~~Cg~~ 180 (709)
+..||.|+.+ ..|+ +++..+.+.|+|+. |+.+
T Consensus 3 ~~pCP~CGG~----DrFr--~~d~~g~G~~~C~~--Cg~g 34 (37)
T smart00778 3 HGPCPNCGGS----DRFR--FDDKDGRGTWFCSV--CGAG 34 (37)
T ss_pred ccCCCCCCCc----cccc--cccCCCCcCEEeCC--CCCC
Confidence 5689999885 4566 44444589999998 9874
No 442
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.16 E-value=0.063 Score=53.17 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=24.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
+.+|+++.|.|++|+||||++.-++-.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999998766554
No 443
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.14 E-value=0.27 Score=50.65 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 20 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 444433 899999999999999999998877654
No 444
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.13 E-value=0.072 Score=58.19 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=38.3
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhc-C----CeEEEEECCC--CHHHHHHHHHHHHc
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHA-G----WKFVLCSMEN--KVREHARKLLEKHI 520 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~-g----~~Vly~SlE~--~~~~~~~Rl~~~~~ 520 (709)
..++|.|+||+|||+++..++.++.... + .+++|+.... +...+..++...+.
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 100 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLR 100 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999888775431 2 5788888642 34566666666554
No 445
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=96.13 E-value=0.065 Score=55.86 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=26.6
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 26 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 444433 99999999999999999999887764
No 446
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.13 E-value=0.076 Score=55.73 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 37 l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 444433 899999999999999999998877653
No 447
>PRK13695 putative NTPase; Provisional
Probab=96.13 E-value=0.051 Score=52.75 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=26.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEE-EEE
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFV-LCS 503 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vl-y~S 503 (709)
-++|.|++|+|||||+..++..+.. .|.++. |+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~~ 36 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFYT 36 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEc
Confidence 3689999999999999998877655 377755 443
No 448
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.13 E-value=0.032 Score=64.02 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=27.6
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 312 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV 312 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3555533 999999999999999999998877643
No 449
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.13 E-value=0.082 Score=52.60 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=26.9
Q ss_pred cCCC-cEEEEEccCCCChHHHHHHHHHHHH-HhcCCe
Q 005204 464 VLPG-ELTIVTGVPNSGKSEWIDALICNIN-EHAGWK 498 (709)
Q Consensus 464 l~~G-~L~ii~G~pG~GKT~~a~qla~~~a-~~~g~~ 498 (709)
+.+| ++++|+|+.|+|||||+..++.... .+.|..
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~ 60 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLP 60 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCC
Confidence 6777 4999999999999999999984433 333433
No 450
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.12 E-value=0.21 Score=51.75 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=26.8
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 23 l~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 444333 899999999999999999998877753
No 451
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.054 Score=62.45 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=26.7
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 335 l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G 367 (530)
T PRK15064 335 FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG 367 (530)
T ss_pred ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 455433 99999999999999999999887664
No 452
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.11 E-value=0.038 Score=61.39 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=31.9
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhc-CCeEEEEECC
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSME 505 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~-g~~Vly~SlE 505 (709)
...+|.|+||+|||.++..++..+..+. +..|+|++.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 4678999999999999998888877643 6889999865
No 453
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.11 E-value=0.014 Score=59.10 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=26.9
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHh
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEH 494 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~ 494 (709)
...+++++|.|++|+|||+++.+++......
T Consensus 27 ~~~~~~~~l~G~n~~GKstll~~i~~~~~la 57 (222)
T cd03285 27 RGKSRFLIITGPNMGGKSTYIRQIGVIVLMA 57 (222)
T ss_pred ecCCeEEEEECCCCCChHHHHHHHHHHHHHH
Confidence 5678999999999999999999999776543
No 454
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.041 Score=62.94 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=26.9
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
++.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 269 l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~ 302 (501)
T PRK11288 269 REPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA 302 (501)
T ss_pred ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC
Confidence 444433 999999999999999999998877644
No 455
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.076 Score=59.85 Aligned_cols=178 Identities=17% Similarity=0.167 Sum_probs=88.6
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEE---CCCCHHHHHHHHHHHHcCCCc---ccccc
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS---MENKVREHARKLLEKHIKKPF---FEANY 529 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~S---lE~~~~~~~~Rl~~~~~g~~~---~~i~~ 529 (709)
.+.++.- +++|+++.|.|++|+||||++.-++--..-. ...+.+=. -+.+.+.+.+.+ +.....++ ..++.
T Consensus 336 ~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~-~G~I~vng~~l~~l~~~~~~k~i-~~v~Q~p~lf~gTire 413 (559)
T COG4988 336 ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT-QGEIRVNGIDLRDLSPEAWRKQI-SWVSQNPYLFAGTIRE 413 (559)
T ss_pred ccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC-CceEEECCccccccCHHHHHhHe-eeeCCCCccccccHHH
Confidence 3444434 9999999999999999999976655444322 22222221 133344333332 22222221 11111
Q ss_pred C--CCCCCCCHHHHHHHHH------HHhc--CcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCC
Q 005204 530 G--GSAERMTVEEFEQGKA------WLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 599 (709)
Q Consensus 530 g--~~~~~l~~e~~~~~~~------~l~~--~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~ 599 (709)
+ --....+++++.++.+ ++.. .....--+.....+..+....+-.-+--.+.++++.|--+. .
T Consensus 414 Ni~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA-------~ 486 (559)
T COG4988 414 NILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA-------H 486 (559)
T ss_pred HhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCcc-------C
Confidence 1 0112356777766532 2322 11111111122234444332221111234589999993222 2
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 600 ~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
.+ .+.-..+.+.|.+++++ -+|++++| .- ....+|.|+.+..-+
T Consensus 487 LD-~etE~~i~~~l~~l~~~--ktvl~itHrl~--------------------~~~~~D~I~vld~G~ 531 (559)
T COG4988 487 LD-AETEQIILQALQELAKQ--KTVLVITHRLE--------------------DAADADRIVVLDNGR 531 (559)
T ss_pred CC-HhHHHHHHHHHHHHHhC--CeEEEEEcChH--------------------HHhcCCEEEEecCCc
Confidence 21 11123567777778876 77888888 31 235678888887544
No 456
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.09 E-value=0.24 Score=54.79 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=44.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcC-CeEEEEECCCC---HHHHHHHHHHHHcCCCccc
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-WKFVLCSMENK---VREHARKLLEKHIKKPFFE 526 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g-~~Vly~SlE~~---~~~~~~Rl~~~~~g~~~~~ 526 (709)
+..|+++.|.|++|+||||++..|+......++ .+|.++..+.- ..+ ..+.++...|++...
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalE-QL~~~a~ilGvp~~~ 253 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHE-QLRIYGKLLGVSVRS 253 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHH-HHHHHHHHcCCceec
Confidence 467899999999999999999999987655433 67777776642 111 133456666777653
No 457
>PF09807 DUF2348: Uncharacterized conserved protein (DUF2348); InterPro: IPR018627 Members of this family of putative uncharacterised proteins have no known function.
Probab=96.09 E-value=0.086 Score=54.35 Aligned_cols=191 Identities=15% Similarity=0.238 Sum_probs=116.1
Q ss_pred chhhhhhhc-----cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCcccccc
Q 005204 455 WRALNELYN-----VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANY 529 (709)
Q Consensus 455 ~~~LD~ll~-----l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~ 529 (709)
|++||.+++ .++|.+++|... ++-=|+++.+++....+. |.+|+++++..+.... .+. ++-.|+++...+.
T Consensus 2 f~eln~ll~~~~~~~~~g~~ili~d~-~~dgsFLlh~~L~~~Lk~-~~~V~fv~~~q~~~HY-~~v-~~KLG~NL~~~~~ 77 (249)
T PF09807_consen 2 FPELNSLLNWSPDSVPPGKLILIEDC-ETDGSFLLHHFLSQYLKA-GCKVCFVAFSQSFSHY-NNV-AQKLGVNLSAAKE 77 (249)
T ss_pred chHHHHHhcCCCCCCCCCeEEEEEcC-CCCchhHHHHHHHHHhcC-CCcEEEEEccCCHHHH-HHH-HHhhEecchHhcc
Confidence 466776664 889999999999 888899988888888886 9999999999986632 232 3334665543321
Q ss_pred CCCCCCCCH-HHHHHHHHHHhc--------CcceEEecCCCCCCHHHHHHHHHHHHHh---cCCcEEEEccCcccccCCC
Q 005204 530 GGSAERMTV-EEFEQGKAWLSN--------TFSLIRCENDSLPSIKWVLDLAKAAVLR---HGVRGLVIDPYNELDHQRP 597 (709)
Q Consensus 530 g~~~~~l~~-e~~~~~~~~l~~--------~~~~i~~~~~~~~~i~~i~~~i~~~~~~---~~~~lIVID~~~~l~~~~~ 597 (709)
. +++.- +-+....+.+-+ ..-+++ + +....+..+.+.|+..+.. .+.-+||||.+.-|...
T Consensus 78 ~---gql~fiD~l~~~~~~l~~~~~~~~~~~~~~l~-~-~~~~~L~~L~~~I~~~l~~~~~~~~~~liIDdls~Ll~l-- 150 (249)
T PF09807_consen 78 K---GQLVFIDGLKSSLDLLFDEDSSDEPNPLKFLR-E-DNASSLRSLYEFIQEALSPADSNGSVVLIIDDLSVLLSL-- 150 (249)
T ss_pred C---CcEEEeehhhhhhhhhhccccccCCccccccc-c-CCcchHHHHHHHHHHHHhhccCCCCeEEEEeCHHHHHHc--
Confidence 1 11110 111111112111 011221 1 2223466777777665543 34689999988877642
Q ss_pred CCCCHHHHHHHHHHHHH-HHHHHhCcEEEEEec-cCCCCCCCCCCCccccccCchhhhcccceEEEEeeC
Q 005204 598 VSQTETEYVSQMLTMVK-RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 665 (709)
Q Consensus 598 ~~~~~~~~~~~i~~~Lk-~lA~~~~i~Vi~v~h-~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~ 665 (709)
+.+. ..+-.++..++ .++.+.++.++++.| .-.... .... .+ ...+.+.||.+|.+..-
T Consensus 151 -G~s~-~~vldF~~ycra~l~~~~~~~lVvl~h~d~~~~~---e~~~--~l--~~~L~h~a~l~i~v~~L 211 (249)
T PF09807_consen 151 -GVSS-NDVLDFIHYCRATLCSESNGSLVVLVHCDIDDED---EEND--LL--LNSLAHMADLVITVEPL 211 (249)
T ss_pred -CCCH-HHHHHHHHHHHHHhccccCCCEEEEEecCCCCcc---chHH--HH--HHHHHHHhcEEEEecCC
Confidence 2222 34668889998 588888888887777 322211 1111 01 34688999999998753
No 458
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.09 E-value=0.028 Score=64.09 Aligned_cols=33 Identities=12% Similarity=0.359 Sum_probs=26.9
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 296 (491)
T PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFG 296 (491)
T ss_pred ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcC
Confidence 3555433 99999999999999999999877653
No 459
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.09 E-value=0.019 Score=58.16 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=28.9
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHHHHHH-hcCCeE
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALICNINE-HAGWKF 499 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~~~a~-~~g~~V 499 (709)
+..|++++|.|++|+|||+++..++..... +.|..|
T Consensus 28 ~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v 64 (222)
T cd03287 28 AEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFV 64 (222)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 678999999999999999999999985443 335443
No 460
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.08 E-value=0.044 Score=62.73 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=27.2
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
-|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 19 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 52 (501)
T PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSG 52 (501)
T ss_pred EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3555544 99999999999999999999887664
No 461
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.08 E-value=0.028 Score=64.12 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=26.8
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
-|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 13 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~G 46 (491)
T PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFG 46 (491)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 3455433 99999999999999999999876654
No 462
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.07 E-value=0.086 Score=54.92 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=26.3
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 32 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 64 (265)
T PRK14252 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNR 64 (265)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 444433 89999999999999999999887653
No 463
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.07 E-value=0.07 Score=61.06 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=26.5
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 268 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G 300 (501)
T PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYG 300 (501)
T ss_pred cccceEEEcCCcEEEEecCCCCCHHHHHHHHhC
Confidence 555433 99999999999999999999876653
No 464
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.05 E-value=0.17 Score=52.58 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 26 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~ 59 (257)
T PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL 59 (257)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444434 899999999999999999998877644
No 465
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.05 E-value=0.031 Score=65.35 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=26.1
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+++-- +.+|+.+.|.|++|+|||||+.-++-
T Consensus 351 L~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred ecceeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 555444 99999999999999999999865543
No 466
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.04 E-value=0.036 Score=63.71 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=32.6
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHh-cCCeEEEEECCC
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEH-AGWKFVLCSMEN 506 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~-~g~~Vly~SlE~ 506 (709)
-++|.|++|+|||.|+..++..+... .|.+|+|++.+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 47999999999999999999887753 389999999764
No 467
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.03 E-value=0.043 Score=63.88 Aligned_cols=173 Identities=20% Similarity=0.192 Sum_probs=86.9
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC---CCHHHHHHHHHHHHcCCC---ccccccC
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKP---FFEANYG 530 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE---~~~~~~~~Rl~~~~~g~~---~~~i~~g 530 (709)
|+.+-- +++|+.+.|.|++|+|||||+.-++--.-- ....|.+-.-+ .+...+..+ ++....-+ ...++++
T Consensus 348 l~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~-~~G~I~i~g~~i~~~~~~~~~~~-i~~v~Q~~~lf~~Ti~~N 425 (571)
T TIGR02203 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP-DSGQILLDGHDLADYTLASLRRQ-VALVSQDVVLFNDTIANN 425 (571)
T ss_pred ccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCEeHHhcCHHHHHhh-ceEEccCcccccccHHHH
Confidence 444333 999999999999999999998766544322 24455443322 222222222 11111111 0111111
Q ss_pred ---CCCCCCCHHHHHHHHHH------HhcC---cceEEecCCCCCCHHH--HHHHHHHHHHhcCCcEEEEccCcccccCC
Q 005204 531 ---GSAERMTVEEFEQGKAW------LSNT---FSLIRCENDSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQR 596 (709)
Q Consensus 531 ---~~~~~l~~e~~~~~~~~------l~~~---~~~i~~~~~~~~~i~~--i~~~i~~~~~~~~~~lIVID~~~~l~~~~ 596 (709)
+.....+++++.++.+. +.+. ....-.+.....+-.+ -+..++.+. .+++++++|--+
T Consensus 426 i~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall--~~~~illLDEpt------ 497 (571)
T TIGR02203 426 IAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALL--KDAPILILDEAT------ 497 (571)
T ss_pred HhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh--cCCCEEEEeCcc------
Confidence 01114667777665433 2221 1111011112233333 223333333 478999999322
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEe
Q 005204 597 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 663 (709)
Q Consensus 597 ~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~ 663 (709)
+..+ ...-..+++.|+++++ +.+||+++|... +...||.++.+.
T Consensus 498 -s~LD-~~~~~~i~~~L~~~~~--~~tiIiitH~~~-------------------~~~~~D~ii~l~ 541 (571)
T TIGR02203 498 -SALD-NESERLVQAALERLMQ--GRTTLVIAHRLS-------------------TIEKADRIVVMD 541 (571)
T ss_pred -ccCC-HHHHHHHHHHHHHHhC--CCEEEEEehhhH-------------------HHHhCCEEEEEe
Confidence 2222 2223456777776643 589999999421 235678888885
No 468
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.03 E-value=0.047 Score=63.84 Aligned_cols=157 Identities=15% Similarity=0.092 Sum_probs=78.4
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC---CHHHHHHHHHHHHcCCCc-------c
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN---KVREHARKLLEKHIKKPF-------F 525 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~---~~~~~~~Rl~~~~~g~~~-------~ 525 (709)
-|+++-- +++|+.+.|.|++|+||||++.-++--.--. +..|.+-.-+. +...+.+++ +.....+. .
T Consensus 356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~-~G~I~idg~~i~~~~~~~l~~~i-~~v~Q~~~lF~~Ti~~ 433 (592)
T PRK10790 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT-EGEIRLDGRPLSSLSHSVLRQGV-AMVQQDPVVLADTFLA 433 (592)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-CceEEECCEEhhhCCHHHHHhhe-EEEccCCccccchHHH
Confidence 3555444 9999999999999999999877654433222 44554433222 223322222 11111110 1
Q ss_pred ccccCCCCCCCCHHHHHHHHHH------Hhc---CcceEEecCCCCCCHHH--HHHHHHHHHHhcCCcEEEEccCccccc
Q 005204 526 EANYGGSAERMTVEEFEQGKAW------LSN---TFSLIRCENDSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDH 594 (709)
Q Consensus 526 ~i~~g~~~~~l~~e~~~~~~~~------l~~---~~~~i~~~~~~~~~i~~--i~~~i~~~~~~~~~~lIVID~~~~l~~ 594 (709)
.+..+ ...+++++.++.+. +.. .......+.....+-.+ -+..++.+. .+++++++|.-+
T Consensus 434 NI~~~---~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl--~~~~illlDEpt---- 504 (592)
T PRK10790 434 NVTLG---RDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV--QTPQILILDEAT---- 504 (592)
T ss_pred HHHhC---CCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH--hCCCEEEEeCCc----
Confidence 11222 13566776665432 221 11111011112233333 223334333 468999999322
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 595 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 595 ~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
+..+. +.-..+.+.|+++.. +++||+++|.
T Consensus 505 ---s~LD~-~t~~~i~~~l~~~~~--~~tvIivtHr 534 (592)
T PRK10790 505 ---ANIDS-GTEQAIQQALAAVRE--HTTLVVIAHR 534 (592)
T ss_pred ---ccCCH-HHHHHHHHHHHHHhC--CCEEEEEecc
Confidence 22222 223466777777654 5899999994
No 469
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.03 E-value=0.067 Score=56.07 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=26.0
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALI 488 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla 488 (709)
|+.+-- +.+|+.+.|.|++|+|||||+.-++
T Consensus 36 l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~ 67 (274)
T PRK14265 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFN 67 (274)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 444433 9999999999999999999988766
No 470
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.02 E-value=0.041 Score=61.71 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=31.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhc-CCeEEEEECC
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSME 505 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~-g~~Vly~SlE 505 (709)
-.+|.|+||+|||.++..++..+..++ +..|+|++.+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 489999999999999999998887653 5789999865
No 471
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.02 E-value=0.0074 Score=59.04 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=32.4
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
++.|+|.||+|||||+.+++..+... |.++..++++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~-~~~~~~i~~Dd 37 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN-GIGPVVISLDD 37 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEehhh
Confidence 47899999999999999999888765 88899998873
No 472
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.01 E-value=0.049 Score=70.44 Aligned_cols=175 Identities=18% Similarity=0.165 Sum_probs=91.1
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC---CCHHHHHHHHHHHHcCCCc---ccccc
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKPF---FEANY 529 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE---~~~~~~~~Rl~~~~~g~~~---~~i~~ 529 (709)
.|+++.- +++|+-+.|.|++|+||||++.-+..-. .-....+.+-..+ .+...+..++ +....-+. ..+++
T Consensus 1301 vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~-~~~~G~I~IdG~dI~~i~~~~LR~~i-~iVpQdp~LF~gTIr~ 1378 (1522)
T TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN-ESAEGEIIIDGLNIAKIGLHDLRFKI-TIIPQDPVLFSGSLRM 1378 (1522)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-cCCCCeEEECCEEccccCHHHHHhcC-eEECCCCcccCccHHH
Confidence 3444433 9999999999999999999987665433 2224455444333 2333333332 21111111 11222
Q ss_pred C-CCCCCCCHHHHHHHHHH------Hhc---CcceEEecCCCCCCHH--HHHHHHHHHHHhcCCcEEEEccCcccccCCC
Q 005204 530 G-GSAERMTVEEFEQGKAW------LSN---TFSLIRCENDSLPSIK--WVLDLAKAAVLRHGVRGLVIDPYNELDHQRP 597 (709)
Q Consensus 530 g-~~~~~l~~e~~~~~~~~------l~~---~~~~i~~~~~~~~~i~--~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~ 597 (709)
+ +.....+++++.++.+. +.. .....-.+.....+.. +.+..++.+. .+++++|+|--+.-++
T Consensus 1379 NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALL--r~~~ILiLDEaTSalD--- 1453 (1522)
T TIGR00957 1379 NLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALL--RKTKILVLDEATAAVD--- 1453 (1522)
T ss_pred HcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHH--cCCCEEEEECCcccCC---
Confidence 2 11235778887666432 221 1111111111233333 4555555544 4689999994332221
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEee
Q 005204 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664 (709)
Q Consensus 598 ~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r 664 (709)
.+++ ..+.+.|++.. .+++||+++|.-. ....+|.|++|..
T Consensus 1454 ---~~Te--~~Iq~~l~~~~--~~~TvI~IAHRl~-------------------ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1454 ---LETD--NLIQSTIRTQF--EDCTVLTIAHRLN-------------------TIMDYTRVIVLDK 1494 (1522)
T ss_pred ---HHHH--HHHHHHHHHHc--CCCEEEEEecCHH-------------------HHHhCCEEEEEEC
Confidence 1222 23455555443 3699999999311 1235799999964
No 473
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.01 E-value=0.056 Score=59.72 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=25.9
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|..+-- +.+|+..-|.||+|+||||++.-++-
T Consensus 352 l~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred eecceeEecCCceEEEECCCCccHHHHHHHHHc
Confidence 444433 89999999999999999999886553
No 474
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.00 E-value=0.057 Score=58.80 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=40.7
Q ss_pred cEEEEEccCCCChHHHHHHHHHHH--HHhcCCeEEEEECCCCHHHHHHHHHHH
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNI--NEHAGWKFVLCSMENKVREHARKLLEK 518 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~--a~~~g~~Vly~SlE~~~~~~~~Rl~~~ 518 (709)
.+++|.|.||+|||.+|++++..+ ... +..++|++.--+.....+..+..
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~-~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEE-GKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhcccc-CCceEEEEecchHHHHHHHHHhh
Confidence 589999999999999999999999 554 88899999887766655555443
No 475
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.00 E-value=0.026 Score=56.86 Aligned_cols=142 Identities=15% Similarity=0.274 Sum_probs=66.7
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC-CCCHHHHHHHHHHHHcCCCccccccCCCCCCCCHHHHHHH
Q 005204 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM-ENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG 544 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl-E~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~~~~ 544 (709)
++..++|.|+.|+|||+++.+++...-.. +..++|+.. +.........+.. .... .+.+.+.
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~------~~~~----------~~~l~~~ 81 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEK-GYKVVYIDFLEESNESSLRSFIE------ETSL----------ADELSEA 81 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT---EECCCHHCCTTBSHHHHHHHHHH------HHHH----------HCHCHHH
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CCcEEEEecccchhhhHHHHHHH------HHHH----------HHHHHHH
Confidence 35799999999999999988887766332 456666655 4444433333322 0000 0011111
Q ss_pred -HHHHhcC-cceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccc-cCCCCCCCHHHHHHHHHHHHHHHHHHhC
Q 005204 545 -KAWLSNT-FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD-HQRPVSQTETEYVSQMLTMVKRFAQHHA 621 (709)
Q Consensus 545 -~~~l~~~-~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~-~~~~~~~~~~~~~~~i~~~Lk~lA~~~~ 621 (709)
...+... ..-+. ..........+...++.+.....--+||||.+..+. .. ......+..+...+...+...+
T Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 82 LGISIPSITLEKIS-KDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIAS----EEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HHHHCCTSTTEEEE-CTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCT----TTTHHHHHHHHHHHHH----TT
T ss_pred Hhhhcccccchhhh-hcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcc----cchHHHHHHHHHHHhhccccCC
Confidence 1111110 10010 001111123333444444443334899999888876 21 1223444555555555556667
Q ss_pred cEEEEEec
Q 005204 622 CHVWFVAH 629 (709)
Q Consensus 622 i~Vi~v~h 629 (709)
+.+|++..
T Consensus 157 ~~~v~~~S 164 (234)
T PF01637_consen 157 VSIVITGS 164 (234)
T ss_dssp EEEEEEES
T ss_pred ceEEEECC
Confidence 76666554
No 476
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=95.99 E-value=0.22 Score=47.71 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=27.8
Q ss_pred EEEccCCCChHHHHHHHHHHHHHhcCCeEEEE
Q 005204 471 IVTGVPNSGKSEWIDALICNINEHAGWKFVLC 502 (709)
Q Consensus 471 ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~ 502 (709)
+.+-.+|+|||++++.++..++++ |.+|+|+
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~-g~~V~~~ 32 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKA-GYSVGYY 32 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHC-CCcEEEE
Confidence 455679999999999999999987 9999997
No 477
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.98 E-value=0.053 Score=56.31 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=50.2
Q ss_pred CCcccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHH
Q 005204 446 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 511 (709)
Q Consensus 446 ~~~~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~ 511 (709)
.....+.||+..+|-++-+.+|+=..|.|++|+|||++++++..+.+. .+..++|....+..++.
T Consensus 48 ~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~GKt~L~l~~i~~~~~-~~v~~V~~~iGer~~ev 112 (274)
T cd01132 48 SVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG-KKVYCIYVAIGQKASTV 112 (274)
T ss_pred CcccccccCCEEeeccCCcccCCEEEeeCCCCCCccHHHHHHHHHhcC-CCeEEEEEecccchHHH
Confidence 344578899999999888999999999999999999997765554432 25555777777765553
No 478
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.98 E-value=0.068 Score=63.96 Aligned_cols=172 Identities=17% Similarity=0.154 Sum_probs=85.3
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC---CCHHHHHHHHHHHHcCCCc---cccccC
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKPF---FEANYG 530 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE---~~~~~~~~Rl~~~~~g~~~---~~i~~g 530 (709)
|+++-- +++|+.+.|.|++|+|||||+.-++--..-. ...|.+-..+ .+...+.++ ++....-+. ..++++
T Consensus 495 L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~-i~~v~Q~~~lf~gTi~eN 572 (710)
T TIGR03796 495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW-SGEILFDGIPREEIPREVLANS-VAMVDQDIFLFEGTVRDN 572 (710)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEeHHHCCHHHHHhh-eeEEecCChhhhccHHHH
Confidence 555433 9999999999999999999986554433222 3444432222 222222222 111111100 011111
Q ss_pred --CCCCCCCHHHHHHHHHH------Hhc---CcceEEecCCCCCCHHH--HHHHHHHHHHhcCCcEEEEccCcccccCCC
Q 005204 531 --GSAERMTVEEFEQGKAW------LSN---TFSLIRCENDSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQRP 597 (709)
Q Consensus 531 --~~~~~l~~e~~~~~~~~------l~~---~~~~i~~~~~~~~~i~~--i~~~i~~~~~~~~~~lIVID~~~~l~~~~~ 597 (709)
......+++++.++.+. +.. .....-.+.....+-.+ -+..++.+. .+++++++|.-+.
T Consensus 573 i~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall--~~p~iliLDEptS------ 644 (710)
T TIGR03796 573 LTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV--RNPSILILDEATS------ 644 (710)
T ss_pred hhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh--hCCCEEEEECccc------
Confidence 01124567777665432 222 11111111112223232 233333333 5789999994332
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEee
Q 005204 598 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664 (709)
Q Consensus 598 ~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r 664 (709)
..+. +.-..+.+.|++ .+.++|+++|.-. ....||.++.|..
T Consensus 645 -~LD~-~te~~i~~~l~~----~~~T~IiitHrl~-------------------~i~~~D~Iivl~~ 686 (710)
T TIGR03796 645 -ALDP-ETEKIIDDNLRR----RGCTCIIVAHRLS-------------------TIRDCDEIIVLER 686 (710)
T ss_pred -cCCH-HHHHHHHHHHHh----cCCEEEEEecCHH-------------------HHHhCCEEEEEeC
Confidence 2222 222456666654 5899999999421 1245899999854
No 479
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.98 E-value=0.033 Score=62.39 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=31.7
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
-.+|.|++|+|||.|+..++..+..+ |.+|+|++.+
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~-~~~v~yi~~~ 178 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRES-GGKILYVRSE 178 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEeeHH
Confidence 46899999999999999998888766 8999999865
No 480
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.98 E-value=0.093 Score=64.55 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=40.8
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCC---HHHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK---VREHARKLLEKH 519 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~---~~~~~~Rl~~~~ 519 (709)
.|.+.+. .....+++|.||+|.||||++.+++. +.+ +|.|++++.. +..+...++..+
T Consensus 21 rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~----~~~-~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 21 RLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAA----GKN-NLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred HHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHH----hCC-CeEEEecCcccCCHHHHHHHHHHHH
Confidence 3444444 45567999999999999999999874 225 8999999743 444555555443
No 481
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.97 E-value=0.031 Score=55.93 Aligned_cols=34 Identities=32% Similarity=0.294 Sum_probs=27.3
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
.|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 23 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred cccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3444433 999999999999999999998876543
No 482
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=95.97 E-value=0.084 Score=56.83 Aligned_cols=179 Identities=17% Similarity=0.207 Sum_probs=94.3
Q ss_pred chhhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC-CC---HH--HHHHHHHHHHcCCCcccc
Q 005204 455 WRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME-NK---VR--EHARKLLEKHIKKPFFEA 527 (709)
Q Consensus 455 ~~~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE-~~---~~--~~~~Rl~~~~~g~~~~~i 527 (709)
+...|.+-- +++|+..-|.|.+|+||||+.+.+..=+..+ | .+ +|..+ .. .. +-.+|-++....-|+..+
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G-~I-~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSL 376 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-G-EI-RFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSL 376 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-c-eE-EECCccccccChhhhhhhhhhceEEEeCCCCCC
Confidence 344455533 9999999999999999999998876654432 2 22 22222 11 11 111221222222222111
Q ss_pred ----------ccC--CCCCCCCHHHH-HHHHHHHhc----C--cceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEcc
Q 005204 528 ----------NYG--GSAERMTVEEF-EQGKAWLSN----T--FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDP 588 (709)
Q Consensus 528 ----------~~g--~~~~~l~~e~~-~~~~~~l~~----~--~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~ 588 (709)
.+| .....++..+. +++.+.+.+ . ..-+-++-.+. -.+=++.++.++ .++++|++|-
T Consensus 377 sPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGG--QRQRIAIARAli--LkP~~i~LDE 452 (534)
T COG4172 377 SPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGG--QRQRIAIARALI--LKPELILLDE 452 (534)
T ss_pred CcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcc--hhhHHHHHHHHh--cCCcEEEecC
Confidence 001 01123333332 233333332 1 11111111111 122223333333 5789999992
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEeeCC
Q 005204 589 YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 666 (709)
Q Consensus 589 ~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r~~ 666 (709)
+.+ .-+..-..+++.-|++|-+++|.+-++++|.=+. +...||.||++..-+
T Consensus 453 -------PTS-ALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~V------------------vrAl~~~viVm~~Gk 504 (534)
T COG4172 453 -------PTS-ALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAV------------------VRALCHRVIVMRDGK 504 (534)
T ss_pred -------Cch-HhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH------------------HHHhhceEEEEeCCE
Confidence 211 2234456789999999999999999999993221 446789999987543
No 483
>PRK09694 helicase Cas3; Provisional
Probab=95.96 E-value=0.12 Score=62.47 Aligned_cols=151 Identities=19% Similarity=0.204 Sum_probs=79.9
Q ss_pred CcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEEC-CCC-HHHHHHHHHHH---HcCCCccccccCCCC--------
Q 005204 467 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM-ENK-VREHARKLLEK---HIKKPFFEANYGGSA-------- 533 (709)
Q Consensus 467 G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~Sl-E~~-~~~~~~Rl~~~---~~g~~~~~i~~g~~~-------- 533 (709)
+.+++|.+++|+|||..++.++..++...+..-+||.+ -+. ..+++.|+... ..+.+.-.+..|...
T Consensus 301 pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~ 380 (878)
T PRK09694 301 PGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSL 380 (878)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhh
Confidence 45999999999999999999988877652334445544 442 56777776532 222111111111000
Q ss_pred ------CCCCHHHHHHHHHHHhc--CcceEEecCCCCCCHHHHHHHHHHH----HHhcC--CcEEEEccCcccccCCCCC
Q 005204 534 ------ERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAA----VLRHG--VRGLVIDPYNELDHQRPVS 599 (709)
Q Consensus 534 ------~~l~~e~~~~~~~~l~~--~~~~i~~~~~~~~~i~~i~~~i~~~----~~~~~--~~lIVID~~~~l~~~~~~~ 599 (709)
..-.++.+.....|+.+ +..+. .+-.-.|+++++..+-.. .+..+ -++||||-+....
T Consensus 381 ~~~~~~~~~~~~~~~~~~~w~~~~~kr~ll--api~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAyD------ 452 (878)
T PRK09694 381 KSRAATEQGQEEAWVQCCEWLSQSNKRVFL--GQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAYD------ 452 (878)
T ss_pred hcccccccccchhhhHHHHHHhhhhhhhhc--CCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhCC------
Confidence 00011222333467652 11111 011235788877544221 12222 4699999544331
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCcEEEEEec
Q 005204 600 QTETEYVSQMLTMVKRFAQHHACHVWFVAH 629 (709)
Q Consensus 600 ~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h 629 (709)
. ++..++..+-++..+++++||+++-
T Consensus 453 --~--ym~~lL~~~L~~l~~~g~~vIllSA 478 (878)
T PRK09694 453 --A--YMYGLLEAVLKAQAQAGGSVILLSA 478 (878)
T ss_pred --H--HHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 1 2445555555555668888888876
No 484
>PRK13409 putative ATPase RIL; Provisional
Probab=95.96 E-value=0.046 Score=63.63 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=23.1
Q ss_pred cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 464 VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 464 l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
+.+|+++.|.|++|+||||++.-++-
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G 121 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSG 121 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999866554
No 485
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.95 E-value=0.054 Score=56.84 Aligned_cols=120 Identities=10% Similarity=0.076 Sum_probs=64.6
Q ss_pred CCCcEEEEEccCCCChHHHHHHHHHHHHHhcC-CeEEEEECCCC--HHHHHHHHHHHHcCCCccccccCCCCCCCCHHHH
Q 005204 465 LPGELTIVTGVPNSGKSEWIDALICNINEHAG-WKFVLCSMENK--VREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 541 (709)
Q Consensus 465 ~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g-~~Vly~SlE~~--~~~~~~Rl~~~~~g~~~~~i~~g~~~~~l~~e~~ 541 (709)
....++.|.|.+|+|||++|.+++.+.-.++. ..++|+++... ..++...++..+... ....
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~-~~~~-------------- 81 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP-DSSI-------------- 81 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC--STS--------------
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccc-cccc--------------
Confidence 45679999999999999999999977553322 35777777533 344444443322221 1000
Q ss_pred HHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhC
Q 005204 542 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHA 621 (709)
Q Consensus 542 ~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~ 621 (709)
....+.+++...+...... +.-++|+|++... ..+.++...+. ....+
T Consensus 82 ------------------~~~~~~~~~~~~l~~~L~~-~~~LlVlDdv~~~-----------~~~~~l~~~~~--~~~~~ 129 (287)
T PF00931_consen 82 ------------------SDPKDIEELQDQLRELLKD-KRCLLVLDDVWDE-----------EDLEELREPLP--SFSSG 129 (287)
T ss_dssp ------------------SCCSSHHHHHHHHHHHHCC-TSEEEEEEEE-SH-----------HHH-------H--CHHSS
T ss_pred ------------------ccccccccccccchhhhcc-ccceeeeeeeccc-----------ccccccccccc--ccccc
Confidence 1233445555555544333 3679999954322 12223333322 23468
Q ss_pred cEEEEEeccC
Q 005204 622 CHVWFVAHPR 631 (709)
Q Consensus 622 i~Vi~v~h~r 631 (709)
+.||++++++
T Consensus 130 ~kilvTTR~~ 139 (287)
T PF00931_consen 130 SKILVTTRDR 139 (287)
T ss_dssp -EEEEEESCG
T ss_pred cccccccccc
Confidence 9999999854
No 486
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.95 E-value=0.062 Score=61.58 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=27.8
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
-|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 20 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (506)
T PRK13549 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV 54 (506)
T ss_pred eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4555544 999999999999999999998876653
No 487
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.94 E-value=0.037 Score=55.77 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=25.7
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHH-HhcCCeEE
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNIN-EHAGWKFV 500 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a-~~~g~~Vl 500 (709)
..++|+|+.|+|||+|+.+++.... .+.|..|.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~ 63 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVP 63 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeE
Confidence 6899999999999999999996543 22366553
No 488
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.94 E-value=0.031 Score=58.57 Aligned_cols=33 Identities=33% Similarity=0.402 Sum_probs=26.6
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 490 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~ 490 (709)
|+++-- +.+|+++.|.|++|+|||||+.-++--
T Consensus 23 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 899999999999999999998866543
No 489
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.94 E-value=0.033 Score=66.48 Aligned_cols=172 Identities=18% Similarity=0.195 Sum_probs=86.0
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC---CCHHHHHHHHHHHHcCCC-------ccc
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKP-------FFE 526 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE---~~~~~~~~Rl~~~~~g~~-------~~~ 526 (709)
|+++-- +++|+.+.|.|++|+||||++.-++--.--. ...+.+-..+ .+...+.+.+ +....-+ ...
T Consensus 481 L~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~l~~~~~~~lr~~i-~~v~Q~~~lf~~TI~eN 558 (694)
T TIGR03375 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT-EGSVLLDGVDIRQIDPADLRRNI-GYVPQDPRLFYGTLRDN 558 (694)
T ss_pred eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEhhhCCHHHHHhcc-EEECCChhhhhhhHHHH
Confidence 444433 9999999999999999999986555333222 3344432211 2222222211 1100000 001
Q ss_pred cccCCCCCCCCHHHHHHHHH------HHhcC---cceEEecCCCCCCHHH--HHHHHHHHHHhcCCcEEEEccCcccccC
Q 005204 527 ANYGGSAERMTVEEFEQGKA------WLSNT---FSLIRCENDSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQ 595 (709)
Q Consensus 527 i~~g~~~~~l~~e~~~~~~~------~l~~~---~~~i~~~~~~~~~i~~--i~~~i~~~~~~~~~~lIVID~~~~l~~~ 595 (709)
+..+ ....+++++.++.+ ++... ....--+.....+-.+ -+..++.+. .+++++++|.-+.
T Consensus 559 i~~~--~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall--~~p~iliLDE~Ts---- 630 (694)
T TIGR03375 559 IALG--APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL--RDPPILLLDEPTS---- 630 (694)
T ss_pred HhCC--CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCC----
Confidence 1111 12356777766533 23221 1111011111223222 333334333 5789999993322
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEeccCCCCCCCCCCCccccccCchhhhcccceEEEEee
Q 005204 596 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 664 (709)
Q Consensus 596 ~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~rk~~~~~~~~p~l~di~GS~~i~~~AD~vl~l~r 664 (709)
+.+ .+.-..+.+.|+++.+ +.++|+++|.-. ....||.++.|..
T Consensus 631 ---~LD-~~te~~i~~~l~~~~~--~~T~iiItHrl~-------------------~~~~~D~iivl~~ 674 (694)
T TIGR03375 631 ---AMD-NRSEERFKDRLKRWLA--GKTLVLVTHRTS-------------------LLDLVDRIIVMDN 674 (694)
T ss_pred ---CCC-HHHHHHHHHHHHHHhC--CCEEEEEecCHH-------------------HHHhCCEEEEEeC
Confidence 222 2223456666766654 789999999421 2357899999864
No 490
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.94 E-value=0.044 Score=61.78 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=32.8
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhc-CCeEEEEECCC
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSMEN 506 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~-g~~Vly~SlE~ 506 (709)
.-++|.|+||+|||.++..++..+..+. +..|+|++.+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 4589999999999999999998887653 67899998653
No 491
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.93 E-value=0.038 Score=56.70 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=31.5
Q ss_pred cCCcEEEEccCc-ccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecc
Q 005204 579 HGVRGLVIDPYN-ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 579 ~~~~lIVID~~~-~l~~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~Vi~v~h~ 630 (709)
..++++..|-=. .|.. ..-.+++--|.++.++.++||+-|+|+
T Consensus 145 t~P~LLLmDEPLaSLD~---------~RK~EilpylERL~~e~~IPIlYVSHS 188 (352)
T COG4148 145 TAPELLLMDEPLASLDL---------PRKREILPYLERLRDEINIPILYVSHS 188 (352)
T ss_pred cCCCeeeecCchhhccc---------chhhHHHHHHHHHHHhcCCCEEEEecC
Confidence 568999999322 2211 123578888889999999999999994
No 492
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.93 E-value=0.0068 Score=59.20 Aligned_cols=33 Identities=30% Similarity=0.613 Sum_probs=28.5
Q ss_pred EEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEE
Q 005204 469 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC 502 (709)
Q Consensus 469 L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~ 502 (709)
|++++|.||+|||||+.+++..+-.. ++.|...
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~-i~~vi~l 35 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE-IWRVIHL 35 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh-hhhcccc
Confidence 89999999999999999999888776 7776544
No 493
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.92 E-value=0.01 Score=60.70 Aligned_cols=40 Identities=10% Similarity=0.210 Sum_probs=35.0
Q ss_pred CCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005204 466 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 466 ~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
.+...+|.|+||+|||+++..++..+..+ |..|.|++++.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-~~~v~y~~~~~ 83 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQR-GRAVGYVPLDK 83 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEHHH
Confidence 34588999999999999999998888766 99999999875
No 494
>PRK06696 uridine kinase; Validated
Probab=95.92 E-value=0.01 Score=60.17 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=32.4
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECC
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 505 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE 505 (709)
-++.|+|+||+|||||+.+|+..+... |.+|+.++++
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~-g~~v~~~~~D 59 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKR-GRPVIRASID 59 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeccc
Confidence 399999999999999999999888654 8888888876
No 495
>PHA00520 packaging NTPase P4
Probab=95.92 E-value=0.058 Score=55.33 Aligned_cols=118 Identities=18% Similarity=0.241 Sum_probs=75.6
Q ss_pred hhhhhc--cCCCcEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHHHHcCCCccccccCCCCCC
Q 005204 458 LNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 535 (709)
Q Consensus 458 LD~ll~--l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~~~~g~~~~~i~~g~~~~~ 535 (709)
.-++.+ +..| +.++.|.+|+|||-|+..++-.+.. +.+...+.+.++.+-
T Consensus 114 v~~~~~~ri~SG-v~vvvG~t~sGKT~~~na~a~~vgg--~d~y~vIR~GEp~~~------------------------- 165 (330)
T PHA00520 114 VHRWIGHRIESG-VEVVVGGTGSGKTPLLNALAPDVGG--GDKYAVIRWGEPLEG------------------------- 165 (330)
T ss_pred hhhhcccccccc-eEEEEccCCCCCchhhhhhhhhhcC--CCceeEEEecCcccc-------------------------
Confidence 344455 5556 9999999999999999988666654 455666655544220
Q ss_pred CCHHHHHHHHHHHhcCcceEEecCCCCCCHHHHHHHHHHHHHhcCCcEEEEccCcccccCCC---CCCCHHHHHHHHHHH
Q 005204 536 MTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP---VSQTETEYVSQMLTM 612 (709)
Q Consensus 536 l~~e~~~~~~~~l~~~~~~i~~~~~~~~~i~~i~~~i~~~~~~~~~~lIVID~~~~l~~~~~---~~~~~~~~~~~i~~~ 612 (709)
++. + .+-+ .+..+.....+++|+|||+-.++..-. ....-....-.++..
T Consensus 166 Y~t-d------------------------~~~~--~~~~l~aml~v~VvvvDSlr~vl~~~~GnatsGGISr~~~~~LTd 218 (330)
T PHA00520 166 YDT-D------------------------LHVF--AALILAAMLDVDVVVVDSLRNVLFELGGNATSGGISRGAYGLLTD 218 (330)
T ss_pred cCc-h------------------------hHHH--HHHHHHHHhhceEEEEechHHHHhhhccCCCCCcchHHHHHHHHH
Confidence 000 0 0000 111222334678999999887765321 222233455678999
Q ss_pred HHHHHHHhCcEEEEEecc
Q 005204 613 VKRFAQHHACHVWFVAHP 630 (709)
Q Consensus 613 Lk~lA~~~~i~Vi~v~h~ 630 (709)
|-++|.++||.||+...|
T Consensus 219 l~~iaas~gc~vV~~lNP 236 (330)
T PHA00520 219 LGNIAASRGCRVVATLNP 236 (330)
T ss_pred HHHHHHHcCcEEEEEcCC
Confidence 999999999999998875
No 496
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.91 E-value=0.056 Score=55.52 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=37.2
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHHHH
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 517 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~~~~~~~~Rl~~ 517 (709)
..++|.|+||+|||.++..++.++..+ |.+|+|++. .++..++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~-g~~v~~it~----~~l~~~l~~ 144 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR-GKSVLIITV----ADIMSAMKD 144 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEH----HHHHHHHHH
Confidence 478999999999999999999999887 999999964 445555443
No 497
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.91 E-value=0.042 Score=62.03 Aligned_cols=63 Identities=11% Similarity=0.217 Sum_probs=51.2
Q ss_pred ccccccchhhhhhhccCCCcEEEEEccCCCChHHHHHHHHHHHHHhc-CCeEEEEECCCCHHHH
Q 005204 449 FGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSMENKVREH 511 (709)
Q Consensus 449 ~gi~tg~~~LD~ll~l~~G~L~ii~G~pG~GKT~~a~qla~~~a~~~-g~~Vly~SlE~~~~~~ 511 (709)
..+.+|+..+|-++-+-+|+=.+|.|+||+|||+++..|+..++.++ ...|.|+-..+.++++
T Consensus 398 e~~~~giRvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEV 461 (672)
T PRK12678 398 EPKKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEV 461 (672)
T ss_pred CcccccceeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhH
Confidence 35778888999888899999999999999999999999988888753 3445566667776665
No 498
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.91 E-value=0.07 Score=56.33 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=26.5
Q ss_pred hhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 458 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 458 LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
|+++-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 55 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 444433 99999999999999999999887764
No 499
>PRK07667 uridine kinase; Provisional
Probab=95.91 E-value=0.011 Score=58.45 Aligned_cols=38 Identities=21% Similarity=0.451 Sum_probs=34.3
Q ss_pred cEEEEEccCCCChHHHHHHHHHHHHHhcCCeEEEEECCC
Q 005204 468 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 506 (709)
Q Consensus 468 ~L~ii~G~pG~GKT~~a~qla~~~a~~~g~~Vly~SlE~ 506 (709)
-++.|+|+||+||||++..++..+... |.+|..++++.
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~-~~~~~~i~~Dd 55 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQE-GIPFHIFHIDD 55 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEEcCc
Confidence 488999999999999999999888765 89999999985
No 500
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=95.90 E-value=0.087 Score=60.25 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=27.3
Q ss_pred hhhhhhc-cCCCcEEEEEccCCCChHHHHHHHHH
Q 005204 457 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 489 (709)
Q Consensus 457 ~LD~ll~-l~~G~L~ii~G~pG~GKT~~a~qla~ 489 (709)
-|+.+-- +.+|+++.|.|++|+|||||+.-++-
T Consensus 16 il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G 49 (500)
T TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG 49 (500)
T ss_pred eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3555544 99999999999999999999887664
Done!