BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005205
(709 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 319 bits (817), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 156/276 (56%), Positives = 203/276 (73%), Gaps = 4/276 (1%)
Query: 428 VDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKS 487
+DM++MF LL+E+ +++D A PL + G I+F+NVHFSY R+ L VSF V G++
Sbjct: 23 IDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQT 82
Query: 488 VAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND 547
+A+VG SG+GKSTILRLLFR +D SG IRIDGQDI +VT SLR IGVVPQDTVLFND
Sbjct: 83 LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142
Query: 548 TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607
TI NIRYGR++A +EV AA+ A IHD IM FP Y T VGERGLKLSGGEKQRVA+A
Sbjct: 143 TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202
Query: 608 RAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLE 667
R LKAP I+L DEATSALD++ E I +L + NRT+I +AHRL+T + D+I+V++
Sbjct: 203 RTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIK 262
Query: 668 NGKVIEQGSHDDLLTKAGRYAQLW----GQQNNTAD 699
+G ++E+G H+ LL++ G YA +W GQ+ + D
Sbjct: 263 DGCIVERGRHEALLSRGGVYADMWQLQQGQEETSED 298
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 282 bits (722), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 176/497 (35%), Positives = 273/497 (54%), Gaps = 20/497 (4%)
Query: 209 RTIRSVSRKVFSHLHELDLRYHLSRETG-ALNRIIDRGSRAINFILSSMV---FNVVPTI 264
+ + + +K+++HL L R++ + + G ++R+I+ + +FIL+ ++ + + I
Sbjct: 91 KILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITII 150
Query: 265 LEISM-----VSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDAS 319
+ +S+ V LA F PF +T YV F + R K + ++A +
Sbjct: 151 IALSIMFFLDVKLTLAALFIFPFYILT-----VYVFFG----RLR-KLTRERSQALAEVQ 200
Query: 320 TRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALS 379
+ + VK F E EA+ +D+ + ALK R A+ N +
Sbjct: 201 GFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPI 260
Query: 380 TAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVDMKSMFQLLEE 439
+ + ++ +SG +TVG L + + QS M +FQL++E
Sbjct: 261 IVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320
Query: 440 KADIQDRDNAMPLNLKGGSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGK 498
DI++ A P+ +K G I D+V F Y E IL ++ + G++VA VG SG GK
Sbjct: 321 DYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGK 380
Query: 499 STILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL 558
ST++ L+ R +D SG I IDG +I + SLR IG+V QD +LF+DT+ NI GR
Sbjct: 381 STLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP 440
Query: 559 SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILL 618
+AT+EEV +AA+ A HD IMN P Y T VGERG+KLSGG+KQR+++AR FL PPIL+
Sbjct: 441 TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILI 500
Query: 619 CDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHD 678
DEATSALD +E+ I AL L+ +RT++ +AHRL+T D+I+V+ENG ++E G+H
Sbjct: 501 LDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHR 560
Query: 679 DLLTKAGRYAQLWGQQN 695
+L+ K G Y L+ QN
Sbjct: 561 ELIAKQGAYEHLYSIQN 577
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 243 bits (619), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 118/246 (47%), Positives = 170/246 (69%), Gaps = 3/246 (1%)
Query: 456 GGSIQFDNVHFSY--LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS 513
G +I+F +V+FSY T + L ++F +P+G + A+VG +GSGKSTI +LL+R +D
Sbjct: 15 GVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE- 73
Query: 514 GSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAA 573
G I+I G+++ + S+R IG+VPQDT+LFN+TI +NI YG+L AT+EEV A + A
Sbjct: 74 GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQ 133
Query: 574 IHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAE 633
++D I P K+ T+VG +G+KLSGGE+QR+A+AR LK P I++ DEATS+LDS TE
Sbjct: 134 LYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL 193
Query: 634 ILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQ 693
A++ L NRT I IAHRL+T + II+L GK++E+G+H DLL G YA++W
Sbjct: 194 FQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNM 253
Query: 694 QNNTAD 699
Q+ D
Sbjct: 254 QSGGND 259
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 243 bits (619), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 168/493 (34%), Positives = 254/493 (51%), Gaps = 11/493 (2%)
Query: 203 FSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVP 262
S V+ + + R++F+H + +R+ TG L I S + S + ++V
Sbjct: 89 LSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVR 148
Query: 263 TILEISMVSGILAYKFGAPFAWITSLSVVAYVV-FTLSVTQWR-TKFRKAMNKADNDAST 320
E + + G+L F + L VVA VV F +S R K + M A ++
Sbjct: 149 ---EGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTS 205
Query: 321 RAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALST 380
A L ++ V + + E +++D+ +K + + + +I S AL
Sbjct: 206 SAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFA 265
Query: 381 AMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVDMKSMFQLLEEK 440
+ L S + E+T G +V SV E + + +++F L++ +
Sbjct: 266 VLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLE 325
Query: 441 ADIQDRDNA-MPLNLKGGSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGK 498
+ RDN G + +V F+Y E+ L VSF +P GK+VA+VG SGSGK
Sbjct: 326 TE---RDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGK 382
Query: 499 STILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL 558
STI L R +D SGSI +DG D+ + L +LR+ +V Q+ LFNDTI +NI Y
Sbjct: 383 STIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE 442
Query: 559 SA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617
T E++ AAR+A + I N P TV+GE G LSGG++QRVA+ARA L+ P+L
Sbjct: 443 GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVL 502
Query: 618 LCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSH 677
+ DEATSALD+ +E I AL L N+T + IAHRL+T Q DEI+V++ G++IE+G H
Sbjct: 503 ILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562
Query: 678 DDLLTKAGRYAQL 690
DLL + G YAQL
Sbjct: 563 ADLLAQDGAYAQL 575
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 237 bits (605), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 164/521 (31%), Positives = 273/521 (52%), Gaps = 18/521 (3%)
Query: 181 VLIGYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNR 240
V+IG I R S + + S V+ + + ++ R++F H+ + + + + TG L
Sbjct: 70 VVIGLMILRGITSYIS---SYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLS 126
Query: 241 IIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAYV-VFTLS 299
I S + SS ++ + E + + G+ F ++W S+ +V + +++
Sbjct: 127 RITYDSEQVA---SSSSGALITVVREGASIIGLFIMMF--YYSWQLSIILVVLAPIVSIA 181
Query: 300 VTQWRTKFR---KAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAA 356
+ +FR K M +T A L ++ V F + E +++D+ +
Sbjct: 182 IRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQG 241
Query: 357 LKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXX 416
+K + + + +I S AL+ + S + +T G + +V
Sbjct: 242 MKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSL 301
Query: 417 XSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAM-PLNLKGGSIQFDNVHFSYLT-ERKI 474
+V + + + +++F +L+ + Q++D ++ G ++F NV F+Y E
Sbjct: 302 TNVNAQFQRGMAACQTLFAILDSE---QEKDEGKRVIDRATGDLEFRNVTFTYPGREVPA 358
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534
L ++ +PAGK+VA+VG SGSGKSTI L+ R +D G I +DG D+ E TL SLR
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418
Query: 535 IGVVPQDTVLFNDTIFHNIRYGRLSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
+ +V Q+ LFNDT+ +NI Y R + E++ +AAR A D I T++GE G
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENG 478
Query: 594 LKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHR 653
+ LSGG++QR+A+ARA L+ PIL+ DEATSALD+ +E I AL L NRTS+ IAHR
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538
Query: 654 LTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 694
L+T Q DEI+V+E+G ++E+G+H +LL + G YAQL Q
Sbjct: 539 LSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 237 bits (605), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 164/521 (31%), Positives = 273/521 (52%), Gaps = 18/521 (3%)
Query: 181 VLIGYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNR 240
V+IG I R S + + S V+ + + ++ R++F H+ + + + + TG L
Sbjct: 70 VVIGLMILRGITSYVS---SYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLS 126
Query: 241 IIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAYV-VFTLS 299
I S + SS ++ + E + + G+ F ++W S+ ++ + +++
Sbjct: 127 RITYDSEQVA---SSSSGALITVVREGASIIGLFIMMF--YYSWQLSIILIVLAPIVSIA 181
Query: 300 VTQWRTKFR---KAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAA 356
+ +FR K M +T A L ++ V F + E +++D+ R
Sbjct: 182 IRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQG 241
Query: 357 LKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXX 416
+K + + + +I S AL+ + S + +T G + +V
Sbjct: 242 MKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSL 301
Query: 417 XSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKG-GSIQFDNVHFSYLT-ERKI 474
+V + + + +++F +L+ + Q++D + + G ++F NV F+Y +
Sbjct: 302 TNVNAQFQRGMAACQTLFTILDSE---QEKDEGKRVIERATGDVEFRNVTFTYPGRDVPA 358
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534
L ++ +PAGK+VA+VG SGSGKSTI L+ R +D G I +DG D+ E TL SLR
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQ 418
Query: 535 IGVVPQDTVLFNDTIFHNIRYGRLSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
+ +V Q+ LFNDT+ +NI Y R + E++ +AAR A D I TV+GE G
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG 478
Query: 594 LKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHR 653
+ LSGG++QR+A+ARA L+ PIL+ DEATSALD+ +E I AL L NRTS+ IAHR
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538
Query: 654 LTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 694
L+T + DEI+V+E+G ++E+G+H+DLL G YAQL Q
Sbjct: 539 LSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 191/587 (32%), Positives = 279/587 (47%), Gaps = 35/587 (5%)
Query: 124 RLRVITALGFLVAAKVLNVQVPFLFKXXXXXXXXXXXXXXXXXXXXXXXXXFGTPAAVLI 183
R R+ A+GFL + V+++ PF G A L
Sbjct: 18 RRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLC---LGLSAVFLC 74
Query: 184 GYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIID 243
G +A N +R + R + + +FS + ++ + TG L I+
Sbjct: 75 G--------AAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGEL---IN 123
Query: 244 RGSRAINFILSSMVFNVVPTILEISMVS-GILAYKFGAPFAWITSLSVVAYV-VFTLSVT 301
R S + S+ N+ + + S GI F +P LSVV V + +
Sbjct: 124 RLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYG 183
Query: 302 QWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQR 361
++ K K + A+ A + + N TV+ F E E E+Y + D ++ R
Sbjct: 184 RYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKV----DHVMQLAR 239
Query: 362 SLAFLN---FGQNVIFSAALSTAMVLCSHGILSG--EMTVGDLVMVXXXXXXXXXXXXXX 416
AF FG + S L VL G+L G MTVG+L
Sbjct: 240 KEAFARAGFFGATGL-SGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGL 298
Query: 417 XSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKG--GSIQFDNVHFSYLT--ER 472
S Y E ++ L +++LLE + + + + LN K G+++F NVHF+Y E
Sbjct: 299 SSFYSELMKGLGAGGRLWELLEREPKLPFNEGVI-LNEKSFQGALEFKNVHFAYPARPEV 357
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLR 532
I S +P+G A+VG SGSGKST+L LL R +D SG+I +DG DI ++ LR
Sbjct: 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417
Query: 533 KSIGVVPQDTVLFNDTIFHNIRYG---RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVV 589
IG V Q+ +LF+ +I NI YG S T EE+ A A I NFP ++TVV
Sbjct: 418 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477
Query: 590 GERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIF 649
GE+G+ LSGG+KQR+A+ARA LK P ILL DEATSALD+ E + AL L + RT +
Sbjct: 478 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLV 537
Query: 650 IAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQLWGQQN 695
IAHRL+T + + VL+ GK+ E G H++LL+K G Y +L +Q+
Sbjct: 538 IAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 584
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 229 bits (585), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 161/505 (31%), Positives = 255/505 (50%), Gaps = 22/505 (4%)
Query: 198 LRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALN-RIIDRGSRAINFILS-- 254
++ + + A R I + +K F + ++ + + G LN R+ D S+ IN +
Sbjct: 127 IQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSK-INEGIGDK 185
Query: 255 -SMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAY-VVFTLSVTQWRTKFRKAMN 312
M F + T + G W +L ++A V LS W +
Sbjct: 186 IGMFFQAMATFFG--------GFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTD 237
Query: 313 K---ADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFG 369
K A A A + L TV F + E E+Y+ L + +K +
Sbjct: 238 KELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGA 297
Query: 370 QNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVD 429
++ A+ + A + ++S E ++G ++ V +
Sbjct: 298 AFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGA 357
Query: 430 MKSMFQLLEEKADIQD--RDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAG 485
+F++++ K I + P N++G +++F N+HFSY + E +IL G++ V +G
Sbjct: 358 AYEVFKIIDNKPSIDSFSKSGHKPDNIQG-NLEFKNIHFSYPSRKEVQILKGLNLKVKSG 416
Query: 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF 545
++VA+VG SG GKST ++L+ R +D G + IDGQDI + + LR+ IGVV Q+ VLF
Sbjct: 417 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476
Query: 546 NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605
TI NIRYGR T +E+ A + A +D IM P ++ T+VGERG +LSGG+KQR+A
Sbjct: 477 ATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIA 536
Query: 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIV 665
+ARA ++ P ILL DEATSALD+ +EA + AL RT+I IAHRL+T D I
Sbjct: 537 IARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAG 596
Query: 666 LENGKVIEQGSHDDLLTKAGRYAQL 690
+ G ++EQG+HD+L+ + G Y +L
Sbjct: 597 FDGGVIVEQGNHDELMREKGIYFKL 621
Score = 211 bits (537), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 139/419 (33%), Positives = 231/419 (55%), Gaps = 17/419 (4%)
Query: 282 FAWITSLSVVAYV--VFTLSVTQWRTKFRKAM-NKADNDASTR-AIDSLINYETVKYFNN 337
+ W +L ++A V + V + + +A+ +K + + S + A +++ N+ TV
Sbjct: 849 YGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTR 908
Query: 338 EAFEAEQYDEFLR-RYEDAALKTQRSLAFLNFGQNVIF---SAALSTAMVLCSHGILSGE 393
E Y + L+ Y +A K +F Q +++ +AA L + +
Sbjct: 909 EQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQL---- 964
Query: 394 MTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVDMKSMFQLLEEKADIQDRD-NAMPL 452
MT ++++V S + ++ V + +++E+ +I +
Sbjct: 965 MTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKP 1024
Query: 453 NLKGGSIQFDNVHFSYLTERKI--LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510
N+ G++QF V F+Y T I L G+S V G+++A+VG+SG GKST+++LL R +D
Sbjct: 1025 NMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD 1084
Query: 511 THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS--ATEEEVYDA 568
+GS+ +DG++I ++ ++ LR +G+V Q+ +LF+ +I NI YG S + EE+ A
Sbjct: 1085 PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRA 1144
Query: 569 ARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDS 628
A+ A IH I + P KY+T VG++G +LSGG+KQR+A+ARA ++ P ILL DEATSALD+
Sbjct: 1145 AKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204
Query: 629 TTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRY 687
+E + AL RT I IAHRL+T D I+V++NGKV E G+H LL + G Y
Sbjct: 1205 ESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIY 1263
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 229 bits (584), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 161/505 (31%), Positives = 255/505 (50%), Gaps = 22/505 (4%)
Query: 198 LRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALN-RIIDRGSRAINFILS-- 254
++ + + A R I + +K F + ++ + + G LN R+ D S+ IN +
Sbjct: 127 IQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSK-INEGIGDK 185
Query: 255 -SMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAY-VVFTLSVTQWRTKFRKAMN 312
M F + T + G W +L ++A V LS W +
Sbjct: 186 IGMFFQAMATFFG--------GFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTD 237
Query: 313 K---ADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFG 369
K A A A + L TV F + E E+Y+ L + +K +
Sbjct: 238 KELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGA 297
Query: 370 QNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVD 429
++ A+ + A + ++S E ++G ++ V +
Sbjct: 298 AFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGA 357
Query: 430 MKSMFQLLEEKADIQD--RDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAG 485
+F++++ K I + P N++G +++F N+HFSY + E +IL G++ V +G
Sbjct: 358 AYEVFKIIDNKPSIDSFSKSGHKPDNIQG-NLEFKNIHFSYPSRKEVQILKGLNLKVKSG 416
Query: 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF 545
++VA+VG SG GKST ++L+ R +D G + IDGQDI + + LR+ IGVV Q+ VLF
Sbjct: 417 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476
Query: 546 NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605
TI NIRYGR T +E+ A + A +D IM P ++ T+VGERG +LSGG+KQR+A
Sbjct: 477 ATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIA 536
Query: 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIV 665
+ARA ++ P ILL DEATSALD+ +EA + AL RT+I IAHRL+T D I
Sbjct: 537 IARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAG 596
Query: 666 LENGKVIEQGSHDDLLTKAGRYAQL 690
+ G ++EQG+HD+L+ + G Y +L
Sbjct: 597 FDGGVIVEQGNHDELMREKGIYFKL 621
Score = 211 bits (536), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/268 (41%), Positives = 172/268 (64%), Gaps = 5/268 (1%)
Query: 425 QSLVDMKSMFQLLEEKADIQDRD-NAMPLNLKGGSIQFDNVHFSYLTERKI--LDGVSFV 481
++ V + +++E+ +I + N+ G++QF V F+Y T I L G+S
Sbjct: 996 KATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLE 1055
Query: 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541
V G+++A+VG+SG GKST+++LL R +D +GS+ +DG++I ++ ++ LR +G+V Q+
Sbjct: 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQE 1115
Query: 542 TVLFNDTIFHNIRYGRLS--ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599
+LF+ +I NI YG S + EE+ AA+ A IH I + P KY+T VG++G +LSGG
Sbjct: 1116 PILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGG 1175
Query: 600 EKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ 659
+KQR+A+ARA ++ P ILL DEATSALD+ +E + AL RT I IAHRL+T
Sbjct: 1176 QKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN 1235
Query: 660 CDEIIVLENGKVIEQGSHDDLLTKAGRY 687
D I+V++NGKV E G+H LL + G Y
Sbjct: 1236 ADLIVVIQNGKVKEHGTHQQLLAQKGIY 1263
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 229 bits (584), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 189/586 (32%), Positives = 276/586 (47%), Gaps = 33/586 (5%)
Query: 124 RLRVITALGFLVAAKVLNVQVPFLFKXXXXXXXXXXXXXXXXXXXXXXXXXFGTPAAVLI 183
R R+ A+GFL + V+++ PF G A L
Sbjct: 49 RRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLC---LGLSAVFLC 105
Query: 184 GYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIID 243
G +A N +R + R + + +FS + ++ + TG L I+
Sbjct: 106 G--------AAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGEL---IN 154
Query: 244 RGSRAINFILSSMVFNVVPTILEISMVS-GILAYKFGAPFAWITSLSVVAYV-VFTLSVT 301
R S + S+ N+ + + S GI F +P LSVV V + +
Sbjct: 155 RLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYG 214
Query: 302 QWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQR 361
++ K K + A+ A + + N TV+ F E E E+Y + D ++ R
Sbjct: 215 RYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKV----DHVMQLAR 270
Query: 362 SLAFLNFG--QNVIFSAALSTAMVLCSHGILSG--EMTVGDLVMVXXXXXXXXXXXXXXX 417
AF G S L VL G+L G MTVG+L
Sbjct: 271 KEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLS 330
Query: 418 SVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKG--GSIQFDNVHFSYLT--ERK 473
S Y E ++ L +++LLE + + + + LN K G+++F NVHF+Y E
Sbjct: 331 SFYSELMKGLGAGGRLWELLEREPKLPFNEGVI-LNEKSFQGALEFKNVHFAYPARPEVP 389
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
I S +P+G A+VG SGSGKST+L LL R +D SG+I +DG DI ++ LR
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 449
Query: 534 SIGVVPQDTVLFNDTIFHNIRYG---RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590
IG V Q+ +LF+ +I NI YG S T EE+ A A I NFP ++TVVG
Sbjct: 450 KIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG 509
Query: 591 ERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFI 650
E+G+ LSGG+KQR+A+ARA LK P ILL DEATSALD+ E + AL L + RT + I
Sbjct: 510 EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVI 569
Query: 651 AHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQLWGQQN 695
AH L+T + + VL+ GK+ E G H++LL+K G Y +L +Q+
Sbjct: 570 AHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 615
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/277 (44%), Positives = 173/277 (62%), Gaps = 4/277 (1%)
Query: 433 MFQLLEEKADIQDRDNAMPLNLK-GGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVA 489
++++L+ K I A ++K G I +NVHF+Y + + IL G++ V AG++VA
Sbjct: 389 IYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVA 448
Query: 490 IVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTI 549
+VG+SG GKSTI+ LL R +D G I IDG D+ ++ LE LRK++ VV Q+ LFN TI
Sbjct: 449 LVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTI 508
Query: 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609
NI G+ T EE+ A + A I P Y+T+VG+RG +LSGG+KQR+A+ARA
Sbjct: 509 EENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARA 568
Query: 610 FLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENG 669
++ P ILL DEATSALD+ +E + AL A RT+I IAHRL+T D II +NG
Sbjct: 569 LVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNG 628
Query: 670 KVIEQGSHDDLLTKAGRYAQLWGQQNNTADAIDAAVK 706
+V+E G H L+ + G Y L Q T DA+D+A +
Sbjct: 629 QVVEVGDHRALMAQQGLYYDLVTAQTFT-DAVDSAAE 664
Score = 205 bits (522), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 157/462 (33%), Positives = 240/462 (51%), Gaps = 29/462 (6%)
Query: 248 AINFILSSMVFNVVPTILEISMVSGI-LAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTK 306
AI+F S+++ +V SMV+GI LA+ +G A + ++++ V F + R
Sbjct: 869 AIDFRFSTVITTLV------SMVAGIGLAFFYGWQMALLI-IAILPIVAFGQYLRGRRFT 921
Query: 307 FRKAMNKAD-NDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAF 365
+ + ++ D+ AI+++ N TV+ E E + E L A+K AF
Sbjct: 922 GKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKE----AF 977
Query: 366 LNFGQNVIFSAALSTAMVL--CSHG-----ILSGEMTVGDL--VMVXXXXXXXXXXXXXX 416
+ Q + + A S +L C++ I++ T+ + + V
Sbjct: 978 I---QGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFA 1034
Query: 417 XSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYL--TERKI 474
S + E ++ +F +L + + I A G + F NV F+Y E +I
Sbjct: 1035 TSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEI 1094
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534
L G+SF V G+++A+VG SG GKST++ LL R +DT G I IDG +I + E R
Sbjct: 1095 LKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154
Query: 535 IGVVPQDTVLFNDTIFHNIRYG--RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGER 592
I +V Q+ LF+ +I NI YG S T +V +AAR A IH+ I P + T VG+R
Sbjct: 1155 IAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDR 1214
Query: 593 GLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAH 652
G +LSGG+KQR+A+ARA ++ P ILL DEATSALD+ +E + AL RT I IAH
Sbjct: 1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAH 1274
Query: 653 RLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 694
RL T M D I V+ NG +IE+G+H L+++ G Y +L +Q
Sbjct: 1275 RLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQ 1316
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 135/404 (33%), Positives = 214/404 (52%), Gaps = 19/404 (4%)
Query: 303 WRTK-----FRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY---DEFLRRYED 354
W TK FRK D + + ++L+ V+ F E +E E + +E LRR
Sbjct: 182 WLTKKGNPLFRKIQESTD-EVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSII 240
Query: 355 AALKTQRSLAFLNFGQNV-IFSAALSTAMVLCSHGIL--SGEMTVGDLVMVXXXXXXXXX 411
+A + + F + IF + VL G+L + +M +G ++
Sbjct: 241 SAF------SLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMF 294
Query: 412 XXXXXXSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTE 471
++ V++ K + ++L EK I++ DNA+ L GS+ F+NV F Y
Sbjct: 295 SLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFEN 354
Query: 472 R-KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES 530
+L GV+F V G VA++G +GSGKST++ L+ R D G + +D D+ V L+
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKD 414
Query: 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590
LR I VPQ+TVLF+ TI N+++GR AT++E+ +AA+ A IHD I++ P Y + V
Sbjct: 415 LRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVE 474
Query: 591 ERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFI 650
G SGG+KQR+++ARA +K P +L+ D+ TS++D TE IL+ LK T+ I
Sbjct: 475 RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFII 534
Query: 651 AHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 694
++ TA+ D+I+VL GKV G+H +LL Y +++ Q
Sbjct: 535 TQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQ 578
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 132/375 (35%), Positives = 199/375 (53%), Gaps = 25/375 (6%)
Query: 332 VKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSH---G 388
+K F E E E++D K Q IFS L M + ++
Sbjct: 229 IKLFTREEKEMEKFDRVNESLRKVGTKAQ------------IFSGVLPPLMNMVNNLGFA 276
Query: 389 ILSG---------EMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVDMKSMFQLLEE 439
++SG +TVG + + + +L + +F++L+
Sbjct: 277 LISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL 336
Query: 440 KADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKS 499
+ + D D A+ L G I+F NV FSY ++ +L ++F + G+ VA+VG +GSGK+
Sbjct: 337 EEEKDDPD-AVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKT 395
Query: 500 TILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS 559
TI+ LL R +D G I +DG DI ++ SLR SIG+V QDT+LF+ T+ N++YG
Sbjct: 396 TIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPG 455
Query: 560 ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLC 619
AT+EE+ +AA+ I + P Y TV+ + G LS G++Q +A+ RAFL P IL+
Sbjct: 456 ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILIL 515
Query: 620 DEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDD 679
DEATS +D+ TE I A+ L +TSI IAHRL T D IIVL +G+++E G HD+
Sbjct: 516 DEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDE 575
Query: 680 LLTKAGRYAQLWGQQ 694
L+ K G Y +L+ Q
Sbjct: 576 LIQKRGFYYELFTSQ 590
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 145/240 (60%), Gaps = 2/240 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNA 637
I Y+T+VGE+G LSGG++QR+A+ARA + P IL+ DEATSALD +E I+
Sbjct: 124 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 183
Query: 638 LKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQLWGQQNN 696
+ + RT I IAHRL+T D IIV+E GK++EQG H +LL++ Y+ L+ Q++
Sbjct: 184 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 243
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 145/240 (60%), Gaps = 2/240 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNA 637
I Y+T+VGE+G LSGG++QR+A+ARA + P IL+ DEATSALD +E I+
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 638 LKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQLWGQQNN 696
+ + RT I IAHRL+T D IIV+E GK++EQG H +LL++ Y+ L+ Q++
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 241
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 188 bits (478), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 145/240 (60%), Gaps = 2/240 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNA 637
I Y+T+VGE+G LSGG++QR+A+ARA + P IL+ DEATSALD +E I+
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 638 LKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQLWGQQNN 696
+ + RT I IAHRL+T D IIV+E GK++EQG H +LL++ Y+ L+ Q++
Sbjct: 188 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 247
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 145/240 (60%), Gaps = 2/240 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG +GSGKST+ +L+ R + +G +
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNA 637
I Y+T+VGE+G LSGG++QR+A+ARA + P IL+ DEATSALD +E I+
Sbjct: 124 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 183
Query: 638 LKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQLWGQQNN 696
+ + RT I IAHRL+T D IIV+E GK++EQG H +LL++ Y+ L+ Q++
Sbjct: 184 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 243
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 187 bits (474), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 145/240 (60%), Gaps = 2/240 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNA 637
I Y+T+VGE+G LSGG++QR+A+ARA + P IL+ D+ATSALD +E I+
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRN 187
Query: 638 LKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQLWGQQNN 696
+ + RT I IAHRL+T D IIV+E GK++EQG H +LL++ Y+ L+ Q++
Sbjct: 188 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 247
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 144/240 (60%), Gaps = 2/240 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNA 637
I Y+T+VGE+G LSGG++QR+A+ARA + P IL+ DEATSALD +E I+
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 638 LKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQLWGQQNN 696
+ + RT I IA RL+T D IIV+E GK++EQG H +LL++ Y+ L+ Q++
Sbjct: 182 MHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 241
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 184 bits (467), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/240 (41%), Positives = 144/240 (60%), Gaps = 2/240 (0%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNA 637
I Y+T+VGE+G LSGG++QR+A+ARA + P IL+ DEATSALD +E I+
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 638 LKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQLWGQQNN 696
+ + RT I IA RL+T D IIV+E GK++EQG H +LL++ Y+ L+ Q++
Sbjct: 188 MHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 247
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 179 bits (453), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/233 (40%), Positives = 141/233 (60%), Gaps = 1/233 (0%)
Query: 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522
+V F+Y +IL +SF +A G SG GKSTI LL R + +G I IDGQ
Sbjct: 6 HVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65
Query: 523 ICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNF 581
I ++LE+ R IG V QD+ + TI N+ YG T+E+++ A + N
Sbjct: 66 IDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 582 PAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL 641
P + +T VGERG+K+SGG++QR+A+ARAFL+ P IL+ DEAT++LDS +E+ + AL SL
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL 185
Query: 642 ANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 694
RT++ IAHRL+T + D+I +E G++ G H++L+ YA+ +Q
Sbjct: 186 MKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 137/242 (56%), Gaps = 6/242 (2%)
Query: 451 PLNLKGGSIQFDNVHFSYLTER--KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508
PLN+KG ++F +V F+Y ++L G++F + GK A+VG +GSGKST+ LL
Sbjct: 10 PLNMKG-LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68
Query: 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL-SATEEEVYD 567
+ G + +DG+ + + L + V Q+ +LF + NI YG + T EE+
Sbjct: 69 YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITA 128
Query: 568 AARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALD 627
A + HD I FP Y T VGE G +LSGG++Q VALARA ++ P +L+ D+ATSALD
Sbjct: 129 VAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALD 188
Query: 628 STTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAG 685
+ + + L +RT + I H+L+ A + I+ L+ G V EQG+H L+ + G
Sbjct: 189 AGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
Query: 686 RY 687
Y
Sbjct: 249 CY 250
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 135/242 (55%), Gaps = 6/242 (2%)
Query: 451 PLNLKGGSIQFDNVHFSYLTER--KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508
PLN+KG ++F +V F+Y ++L G++F + GK A+VG +GSGKST+ LL
Sbjct: 10 PLNMKG-LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68
Query: 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL-SATEEEVYD 567
+ G + +DG+ + + L + V Q+ +LF + NI YG + T EE+
Sbjct: 69 YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITA 128
Query: 568 AARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALD 627
A + HD I FP Y T VGE G +LSGG++Q VALARA ++ P +L+ D ATSALD
Sbjct: 129 VAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188
Query: 628 STTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAG 685
+ + + L +RT + I +L+ A + I+ L+ G V EQG+H L+ + G
Sbjct: 189 AGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
Query: 686 RY 687
Y
Sbjct: 249 CY 250
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 134/242 (55%), Gaps = 6/242 (2%)
Query: 451 PLNLKGGSIQFDNVHFSYLTER--KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508
PLN+KG ++F +V F+Y ++L G++F + GK A+VG +GSGKST+ LL
Sbjct: 10 PLNMKG-LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68
Query: 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL-SATEEEVYD 567
+ G + +DG+ + + L + V Q+ +LF + NI YG + T EE+
Sbjct: 69 YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITA 128
Query: 568 AARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALD 627
A + HD I FP Y T VGE G +L+ G++Q VALARA ++ P +L+ D ATSALD
Sbjct: 129 VAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALD 188
Query: 628 STTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAG 685
+ + + L +RT + I +L+ A + I+ L+ G V EQG+H L+ + G
Sbjct: 189 AGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
Query: 686 RY 687
Y
Sbjct: 249 CY 250
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 139/257 (54%), Gaps = 9/257 (3%)
Query: 451 PLNLKGGSIQFDNVHFSYLTERKIL--DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508
PL+L+G +QF +V F+Y +L G++F + G+ A+VG +GSGKST+ LL
Sbjct: 8 PLHLEG-LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL 66
Query: 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG-RLSATEEEVYD 567
+ G + +DG+ + + L + + V Q+ +F ++ NI YG T EE+
Sbjct: 67 YQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITA 126
Query: 568 AARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALD 627
AA ++ H I P Y T V E G +LSGG++Q VALARA ++ P +L+ D+ATSALD
Sbjct: 127 AAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALD 186
Query: 628 STTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAG 685
+ ++ ++ L +R+ + I L+ Q D I+ LE G + E G+H L+ K G
Sbjct: 187 ANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKG 246
Query: 686 RYAQLWGQQNNTADAID 702
Y W ADA +
Sbjct: 247 CY---WAMVQAPADAPE 260
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 123/237 (51%), Gaps = 20/237 (8%)
Query: 458 SIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516
SI N F++ ++ L+G++F +P G VA+VG G GKS++L L D G +
Sbjct: 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 517 RIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRA-AIH 575
I G S+ VPQ + ND++ NI +G EE Y + +A A+
Sbjct: 63 AIKG-------------SVAYVPQQAWIQNDSLRENILFG--CQLEEPYYRSVIQACALL 107
Query: 576 DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL 635
+ P+ T +GE+G+ LSGG+KQRV+LARA I L D+ SA+D+ I
Sbjct: 108 PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 167
Query: 636 NAL---KSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQ 689
+ K + N+T I + H ++ Q D IIV+ GK+ E GS+ +LL + G +A+
Sbjct: 168 ENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAE 224
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 8/228 (3%)
Query: 446 RDNAMPLNLKGGSIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503
+D+ P GG + ++ Y TE IL+ +SF + G+ V ++G +GSGKST+L
Sbjct: 10 KDDIWP---SGGQMTVKDLTAKY-TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLS 65
Query: 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEE 563
R +T G I+IDG +TLE RK+ GV+PQ +F+ T N+ + +++
Sbjct: 66 AFLRLLNT-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQ 123
Query: 564 EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEAT 623
E++ A + I FP K V+ + G LS G KQ + LAR+ L ILL DE +
Sbjct: 124 EIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPS 183
Query: 624 SALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKV 671
+ LD T I LK + T I R+ ++CD+ +V+E KV
Sbjct: 184 AHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKV 231
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 115/209 (55%), Gaps = 16/209 (7%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLESL 531
L+ VS VPAG+ ++G SG+GKST++R + GS+ +DGQ++ E L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 532 RKSIGVVPQD-TVLFNDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVV 589
R+ IG++ Q +L + T+F N+ L T ++ + RR +++ K+ +
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD--EVKRRVTELLSLVGLGDKHDSYP 138
Query: 590 GERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---T 646
LSGG+KQRVA+ARA P +LLCDEATSALD T IL LK + N R T
Sbjct: 139 S----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI-NRRLGLT 193
Query: 647 SIFIAHRLTTAMQ-CDEIIVLENGKVIEQ 674
+ I H + + CD + V+ NG++IEQ
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQ 222
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 115/209 (55%), Gaps = 16/209 (7%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLESL 531
L+ VS VPAG+ ++G SG+GKST++R + GS+ +DGQ++ E L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 532 RKSIGVVPQD-TVLFNDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVV 589
R+ IG++ Q +L + T+F N+ L T ++ + RR +++ K+ +
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD--EVKRRVTELLSLVGLGDKHDSYP 161
Query: 590 GERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---T 646
LSGG+KQRVA+ARA P +LLCD+ATSALD T IL LK + N R T
Sbjct: 162 S----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI-NRRLGLT 216
Query: 647 SIFIAHRLTTAMQ-CDEIIVLENGKVIEQ 674
+ I H + + CD + V+ NG++IEQ
Sbjct: 217 ILLITHEMDVVKRICDCVAVISNGELIEQ 245
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 113/209 (54%), Gaps = 16/209 (7%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLESL 531
L+ VS VPAG+ ++G SG+GKST++R + GS+ +DGQ++ E L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 532 RKSIGVVPQD-TVLFNDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVV 589
R+ IG + Q +L + T+F N+ L T ++ + RR +++ K+ +
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKD--EVKRRVTELLSLVGLGDKHDSYP 161
Query: 590 GERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR---T 646
LSGG+KQRVA+ARA P +LLCD+ATSALD T IL LK + N R T
Sbjct: 162 S----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI-NRRLGLT 216
Query: 647 SIFIAHRLTTAMQ-CDEIIVLENGKVIEQ 674
+ I H + CD + V+ NG++IEQ
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQ 245
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 112/224 (50%), Gaps = 23/224 (10%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLES 530
++L G++ + G+ V ++G SGSGKST LR L D G I IDG ++ + L
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 76
Query: 531 LRKSIGVV-------PQDTVLFNDTIFH-NIRYGRLSATEEEVYDAARRAAIHDTIMNFP 582
+R+ +G+V P TVL N T+ +R E + + + + D +P
Sbjct: 77 VREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP 136
Query: 583 AKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA 642
LSGG+ QRVA+ARA P I+L DE TSALD E+L+ +K LA
Sbjct: 137 DS-----------LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 185
Query: 643 N-NRTSIFIAHRLTTAMQC-DEIIVLENGKVIEQGSHDDLLTKA 684
N T + + H + A + D ++ ++ G +IE+G +DL +
Sbjct: 186 NEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 229
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 112/224 (50%), Gaps = 23/224 (10%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLES 530
++L G++ + G+ V ++G SGSGKST LR L D G I IDG ++ + L
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 97
Query: 531 LRKSIGVV-------PQDTVLFNDTIFH-NIRYGRLSATEEEVYDAARRAAIHDTIMNFP 582
+R+ +G+V P TVL N T+ +R E + + + + D +P
Sbjct: 98 VREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP 157
Query: 583 AKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA 642
LSGG+ QRVA+ARA P I+L DE TSALD E+L+ +K LA
Sbjct: 158 DS-----------LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA 206
Query: 643 N-NRTSIFIAHRLTTAMQC-DEIIVLENGKVIEQGSHDDLLTKA 684
N T + + H + A + D ++ ++ G +IE+G +DL +
Sbjct: 207 NEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 124/233 (53%), Gaps = 13/233 (5%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
+I+F V Y + + GVSF + G+ V ++G SGSGK+TILRL+ G +
Sbjct: 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYG-RLSATEEEVYDAARRAAIH 575
I G+ + + L ++++G+V Q+ LF T++ N+ +G R ++ DA R
Sbjct: 74 IGGKRVTD--LPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVR---- 127
Query: 576 DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL 635
++ F + + +LSGG++QRVALARA P +LL DE +A+D+ E+
Sbjct: 128 -ELLRF-MRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR 185
Query: 636 NALKSLANNR--TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTKAG 685
++ + + TS+F+ H A++ D ++VL G V + G+ +++ K G
Sbjct: 186 TFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 114/224 (50%), Gaps = 23/224 (10%)
Query: 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526
Y + K +DGVSF V G+ VA++G SG GK+T L +L + SG I D D+
Sbjct: 11 KYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD--DVLVN 68
Query: 527 TLESLRKSIGVVPQDTVLFND-TIFHNI----RYGRLSATEEE--VYDAARRAAIHDTIM 579
+ + +G+V Q+ L+ T+F NI R R+S E E V + AR+ I + +
Sbjct: 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLD 128
Query: 580 NFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALK 639
P + LSGG++QRVALARA +K P +LL DE S LD+ + +K
Sbjct: 129 RKPTQ-----------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIK 177
Query: 640 SLANNR--TSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDL 680
L TS+++ H AM I V GK+++ G+ D++
Sbjct: 178 HLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 24/231 (10%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534
LD +S V +G+ I+G +G+GK+ L L+ SG I +DG+D+ +++ E +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 535 IGVVPQDTVLFND-TIFHNIRYG-RLSATEE--EVYDAARRAAIHDTIMNFPAKYSTVVG 590
I V Q+ LF + N+ +G R+ ++ V D AR I + P
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-------- 125
Query: 591 ERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEA---EILNALKSLANNRTS 647
L LSGGE+QRVALARA + P ILL DE SALD T+ E+L+ L N T
Sbjct: 126 ---LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK-KNKLTV 181
Query: 648 IFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTKA--GRYAQLWGQQN 695
+ I H T A + D I V+ +GK+I+ G +++ K GR A G +N
Sbjct: 182 LHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVGFEN 232
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 22/215 (10%)
Query: 490 IVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-T 548
++G +G+GKS L L+ G +R++G DI + E R+ IG VPQD LF +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 549 IFHNIRYG----RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604
++ NI YG + V + A + I + PA+ LSGGE+QRV
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----------LSGGERQRV 135
Query: 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLT-TAMQCD 661
ALARA + P +LL DE SA+D T+ ++ L+ + + + + H L AM D
Sbjct: 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195
Query: 662 EIIVLENGKVIEQGSHDDLLT-KAGRYAQLWGQQN 695
E+ V+ NG+++E+G +L + K G A+ +N
Sbjct: 196 EVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARN 230
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 129/245 (52%), Gaps = 25/245 (10%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534
L+ ++ + G+ +A++G SGSGKST+L + + SG I D +D+ E L ++
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTE--LPPKDRN 76
Query: 535 IGVVPQDTVLFND-TIFHNIRYGR--LSATEEEVYDAARRAA--IH-DTIMN-FPAKYST 587
+G+V Q+ L+ T++ NI + A EE+ R A +H D ++N +P
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP----- 131
Query: 588 VVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR-- 645
+LSGG++QRVA+ARA +K P +LL DE S LD+ E+ LK L
Sbjct: 132 ------WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI 185
Query: 646 TSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWG-QQNNTADAIDA 703
T++++ H A+ D I V+ G++++ G+ D++ K +Y + G N + ++A
Sbjct: 186 TTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP-KYKFVGGFLGNPPMNFVEA 244
Query: 704 AVKLG 708
V+ G
Sbjct: 245 KVEDG 249
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 17/222 (7%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI +G +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 580 NFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL-NAL 638
F + +TV+GE G+ LSGG++ R++LARA K + L D LD TE ++ + +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 639 KSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDL 680
L N+T I + ++ + D+I++L G G+ +L
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 17/222 (7%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI +G +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 580 NFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL-NAL 638
F + +TV+GE G+ LSGG++ R++LARA K + L D LD TE ++ + +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 639 KSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDL 680
L N+T I + ++ + D+I++L G G+ +L
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
+L ++F + G+ +A+ G++G+GK+++L ++ + G I+ G+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 82
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I Q + + TI NI +G +S E + + + I F K + V+GE G
Sbjct: 83 -ISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 140
Query: 594 LKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL-NALKSLANNRTSIFIAH 652
+ LSGG++ R++LARA K + L D LD TE EI + + L N+T I +
Sbjct: 141 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 200
Query: 653 RLTTAMQCDEIIVLENGKVIEQGSHDDL 680
++ + D+I++L G G+ +L
Sbjct: 201 KMEHLKKADKILILHEGSSYFYGTFSEL 228
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 17/222 (7%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI G +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIIRG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 580 NFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL-NAL 638
F + +TV+GE G+ LSGG++ R++LARA K + L D LD TE ++ + +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 639 KSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDL 680
L N+T I + ++ + D+I++L G G+ +L
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 17/222 (7%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI G +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIISG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 580 NFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL-NAL 638
F + +TV+GE G+ LSGG++ R++LARA K + L D LD TE ++ + +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 639 KSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDL 680
L N+T I + ++ + D+I++L G G+ +L
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
+L ++F + G+ +A+ G++G+GK+++L ++ + G I+ G+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I Q + + TI NI +G +S E + + + I F K + V+GE G
Sbjct: 71 -ISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128
Query: 594 LKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL-NALKSLANNRTSIFIAH 652
+ LSGG++ R++LARA K + L D LD TE EI + + L N+T I +
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
Query: 653 RLTTAMQCDEIIVLENGKVIEQGSHDDL 680
++ + D+I++L G G+ +L
Sbjct: 189 KMEHLKKADKILILHEGSSYFYGTFSEL 216
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 17/236 (7%)
Query: 457 GSIQFDNV----HFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH 512
G I+ NV H E+K L+ VS V+ G+ + + G +GSGKST+L+++ +
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 513 SGSIRIDGQDICEVTLESLRKSIGVV---PQDTVLFNDTIFHNIRYGRLSATEEEVYDAA 569
SG + DG+ +R++IG+ P+D F + +F + + + +
Sbjct: 63 SGDVLYDGE---RKKGYEIRRNIGIAFQYPEDQ-FFAERVFDEVAFAVKNFYPDRDPVPL 118
Query: 570 RRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDST 629
+ A+ ++F + V LSGGEK+RVA+A + P IL+ DE LD
Sbjct: 119 VKKAMEFVGLDFDSFKDRV----PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 174
Query: 630 TEAEILNALKSLAN-NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 683
+ ++L ++ +T I I+H + T + D ++VLE GK + G+ + L K
Sbjct: 175 GKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 114/232 (49%), Gaps = 29/232 (12%)
Query: 459 IQFDNVHFSYLTERKI---LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515
++ NV +Y +I L V+ + G+ V+I+G SGSGKST+L ++ G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 516 IRIDG---QDICEVTLESLRKS-IG-------VVPQDTVLFNDTIFHNIRY-GRLSATE- 562
+ ID D+ + L +R+ IG ++P T L N + +Y G +S E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 563 -EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDE 621
+ + + A + + N +LSGG++QRVA+ARA PPI+L D+
Sbjct: 122 RKRALECLKMAELEERFANHKPN----------QLSGGQQQRVAIARALANNPPIILADQ 171
Query: 622 ATSALDSTTEAEILNALKSL--ANNRTSIFIAHRLTTAMQCDEIIVLENGKV 671
T ALDS T +I+ LK L + +T + + H + A + II L++G+V
Sbjct: 172 PTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 18/224 (8%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
S+ F N FS L +L ++F + G+ +A+ G++G+GK+++L ++ + G I+
Sbjct: 40 SLSFSN--FSLLG-TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
G+ I Q + + TI NI G +S E + + +
Sbjct: 97 HSGR-------------ISFCSQFSWIMPGTIKENIIAG-VSYDEYRYRSVIKACQLEED 142
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL-N 636
I F K + V+GE G+ LSGG++ R++LARA K + L D LD TE EI +
Sbjct: 143 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 202
Query: 637 ALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDL 680
+ L N+T I + ++ + D+I++L G G+ +L
Sbjct: 203 CVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 13/224 (5%)
Query: 465 HFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524
H E+K L+ VS V+ G+ + + G +GSGKST+L+++ + SG + DG+
Sbjct: 13 HRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE--- 69
Query: 525 EVTLESLRKSIGVV---PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNF 581
+R++IG+ P+D F + +F + + + + + A+ ++F
Sbjct: 70 RKKGYEIRRNIGIAFQYPEDQ-FFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF 128
Query: 582 PAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL 641
+ V LSGGEK+RVA+A + P IL+ DE LD + ++L ++
Sbjct: 129 DSFKDRV----PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW 184
Query: 642 AN-NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 683
+T I I+H + T + D ++VLE GK + G+ + L K
Sbjct: 185 KTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 83.2 bits (204), Expect = 5e-16, Method: Composition-based stats.
Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 29/232 (12%)
Query: 459 IQFDNVHFSYLTERKI---LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515
I+ NV +Y +I L V+ + G+ V+I+G SGSGKST+L ++ G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 516 IRIDG---QDICEVTLESLRK--------SIGVVPQDTVLFNDTIFHNIRY-GRLSATE- 562
+ ID D+ + L +R+ ++P T L N + +Y G +S E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 563 -EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDE 621
+ + + A + + N +LSGG++QRVA+ARA PPI+L D+
Sbjct: 122 RKRALECLKMAELEERFANHKPN----------QLSGGQQQRVAIARALANNPPIILADQ 171
Query: 622 ATSALDSTTEAEILNALKSL--ANNRTSIFIAHRLTTAMQCDEIIVLENGKV 671
T ALDS T +I+ LK L + +T + + H + A + II L++G+V
Sbjct: 172 PTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 19/224 (8%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
S+ F N FS L +L ++F + G+ +A+ G++G+GK+++L ++ + G I+
Sbjct: 40 SLSFSN--FSLLG-TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
G+ I Q++ + TI NI +S E + + +
Sbjct: 97 HSGR-------------ISFCSQNSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEED 141
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL-N 636
I F K + V+GE G+ LSGG++ R++LARA K + L D LD TE EI +
Sbjct: 142 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 201
Query: 637 ALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDL 680
+ L N+T I + ++ + D+I++L G G+ +L
Sbjct: 202 CVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 110/227 (48%), Gaps = 16/227 (7%)
Query: 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518
++ + ++++Y L G++ + G+ AI+G +G GKST+ + SG I
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 519 DGQ--DICEVTLESLRKSIGVVPQD--TVLFNDTIFHNIRYG--RLSATEEEVYDAARRA 572
D + D + LR+SIG+V QD LF+ +++ ++ +G + E+E+ A
Sbjct: 68 DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNA 127
Query: 573 AIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEA 632
I + K + LS G+K+RVA+A + P +L+ DE T+ LD +
Sbjct: 128 LKRTGIEHLKDKPTHC-------LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVS 180
Query: 633 EILNALKSLANNR--TSIFIAHRL-TTAMQCDEIIVLENGKVIEQGS 676
EI+ L + T I H + + CD + V++ G+VI QG+
Sbjct: 181 EIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 100/208 (48%), Gaps = 16/208 (7%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
+L ++F + G+ +A+ G++G+GK+++L ++ + G I+ G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I Q++ + TI NI +S E + + + I F K + V+GE G
Sbjct: 101 -ISFCSQNSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 594 LKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL-NALKSLANNRTSIFIAH 652
+ LSGG++ R++LARA K + L D LD TE EI + + L N+T I +
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 653 RLTTAMQCDEIIVLENGKVIEQGSHDDL 680
++ + D+I++L G G+ +L
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 18/222 (8%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENII--GVSYDEYRYKSVVKACQLQQDIT 143
Query: 580 NFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL-NAL 638
F + +TV+GE G+ LSGG++ R++LARA K + L D LD TE ++ + +
Sbjct: 144 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 203
Query: 639 KSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDL 680
L N+T I + ++ + D+I++L G G+ +L
Sbjct: 204 CKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 245
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 114/244 (46%), Gaps = 36/244 (14%)
Query: 459 IQFDNVHFSYLTER---KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH--- 512
I+ +++ YL K DG+S + AIVG S SGKSTI+ + ++ +
Sbjct: 5 IRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRI 64
Query: 513 -SGSIRIDGQDICEVTLESLRK----SIGVVPQDTVL-----------FNDTI-FHNIRY 555
SG + G+D+ + E LRK I +VPQ F DT+ H +R+
Sbjct: 65 LSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRW 124
Query: 556 GRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615
S E+ + R ++ V+ L+LSGG KQRV +A A L P
Sbjct: 125 SH-SELIEKASEKLRMVRLNP---------EAVLNSYPLQLSGGMKQRVLIALALLLDPV 174
Query: 616 ILLCDEATSALDSTTEAEILNALKSLANNR--TSIFIAHRLTTAMQ-CDEIIVLENGKVI 672
+L+ DE TSALD T+A I+ LK L T IF+ H + A + D++ V+ G ++
Sbjct: 175 VLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLV 234
Query: 673 EQGS 676
E S
Sbjct: 235 EYNS 238
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 29/232 (12%)
Query: 459 IQFDNVHFSYLTERKI---LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515
I+ NV +Y +I L V+ + G+ V+I G SGSGKST L ++ G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 516 IRIDG---QDICEVTLESLRK--------SIGVVPQDTVLFNDTIFHNIRYGRLSATEEE 564
+ ID D+ + L +R+ ++P T L N + +Y + EE
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 565 ---VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDE 621
+ + A + + N +LSGG++QRVA+ARA PPI+L DE
Sbjct: 122 RKRALECLKXAELEERFANHKPN----------QLSGGQQQRVAIARALANNPPIILADE 171
Query: 622 ATSALDSTTEAEILNALKSL--ANNRTSIFIAHRLTTAMQCDEIIVLENGKV 671
T ALDS T +I LK L + +T + + H + A + II L++G+V
Sbjct: 172 PTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 16/208 (7%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
+L ++F + G+ +A+ G++G+GK+++L ++ + G I+ G+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I Q + + TI NI +S E + + + I F K + V+GE G
Sbjct: 71 -ISFCSQFSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 127
Query: 594 LKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL-NALKSLANNRTSIFIAH 652
+ LSGG++ R++LARA K + L D LD TE EI + + L N+T I +
Sbjct: 128 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 187
Query: 653 RLTTAMQCDEIIVLENGKVIEQGSHDDL 680
++ + D+I++L G G+ +L
Sbjct: 188 KMEHLKKADKILILHEGSSYFYGTFSEL 215
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 107/223 (47%), Gaps = 25/223 (11%)
Query: 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL 528
+ +++IL G+SF + G+ ++G +G+GK+T LR++ SG + + G+++ E
Sbjct: 25 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPH 84
Query: 529 ESLRKSIGVVPQDTVLFNDTIFHNIRYGRL---------SATEEEVYDAARRAAIHDTIM 579
E +RK I +P++ + + I Y R S EE V A A + + I
Sbjct: 85 E-VRKLISYLPEEAGAYRN--MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK 141
Query: 580 NFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALK 639
+ + YS G +++ +ARA + P + + DE TS LD E+ LK
Sbjct: 142 DRVSTYSK-----------GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK 190
Query: 640 SLANNRTSIFIA--HRLTTAMQCDEIIVLENGKVIEQGSHDDL 680
+ +I ++ + L CD I ++ NG ++E G+ ++L
Sbjct: 191 QASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 100/208 (48%), Gaps = 15/208 (7%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
+L ++F + G+ +A+ G++G+GK+++L ++ + G I+ G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I Q + + TI NI +G +S E + + + I F K + V+GE G
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 594 LKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL-NALKSLANNRTSIFIAH 652
+ LS G++ +++LARA K + L D LD TE EI + + L N+T I +
Sbjct: 159 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 653 RLTTAMQCDEIIVLENGKVIEQGSHDDL 680
++ + D+I++L G G+ +L
Sbjct: 219 KMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 113/233 (48%), Gaps = 18/233 (7%)
Query: 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518
++ ++H+ ++ ++ +++ VS + +G+ VAI+G +G+GKST+LRLL G +
Sbjct: 12 LEASHLHY-HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHL 70
Query: 519 DGQDICEVTLESLRKSIGVVPQDTVL-FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
GQ++ ++L ++ V+ Q + L F ++ I+ GR + A ++
Sbjct: 71 LGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTD 130
Query: 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK------APPILLCDEATSALDSTTE 631
+ + V LSGGE+QRV LAR + P L DE TSALD +
Sbjct: 131 CLALAQRDYRV-------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQ 183
Query: 632 AEILNALKSLANNRT--SIFIAHRLT-TAMQCDEIIVLENGKVIEQGSHDDLL 681
L L+ L + H L A+ D I++L GK++ G+ +++L
Sbjct: 184 QHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 24/219 (10%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLESL 531
LD V+ + G+ I+G SG+GK+T +R++ +G + D + + ++ +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 532 RKSIGVVPQDTVLF-NDTIFHNIRYG--RLSATEEE----VYDAARRAAIHDTIMNFPAK 584
+ IG+V Q L+ N T F NI + + ++EE V + A+ IH + +FP +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE 140
Query: 585 YSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN- 643
LSGG++QRVALARA +K P +LL DE S LD+ +K + +
Sbjct: 141 -----------LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189
Query: 644 -NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 680
T + ++H D + VL GK+++ G +DL
Sbjct: 190 LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 16/208 (7%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
+L ++F + G+ +A+ G++G+GK+++L ++ + G I+ G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I Q + + TI NI +S E + + + I F K + V+GE G
Sbjct: 101 -ISFCSQFSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 594 LKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL-NALKSLANNRTSIFIAH 652
+ LS G++ +++LARA K + L D LD TE EI + + L N+T I +
Sbjct: 158 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 653 RLTTAMQCDEIIVLENGKVIEQGSHDDL 680
++ + D+I++L G G+ +L
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 11/206 (5%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI---CEVTLE 529
+IL G+S V G+ V+I+G SGSGKST+L +L G + ++G+++ E L
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77
Query: 530 SLR-KSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST 587
LR + +G V Q L + T N+ L + + +A R + + K S
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPK-KEAKERGEYLLSELGLGDKLS- 135
Query: 588 VVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTS 647
+ +LSGGE+QRVA+ARA P +L DE T LDS +++ + TS
Sbjct: 136 ---RKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTS 192
Query: 648 I-FIAHRLTTAMQCDEIIVLENGKVI 672
I + H A + +++GKV+
Sbjct: 193 IVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 117/229 (51%), Gaps = 19/229 (8%)
Query: 464 VHFSYLTER----KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+H +L++ +L+ +S + G+ + I+G SG GK+T+LR L SG I +
Sbjct: 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLS 64
Query: 520 GQDICE--VTLESLRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHD 576
G+ I L + +G + Q+ VLF T++ NI YG + + R A+ +
Sbjct: 65 GKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLE 124
Query: 577 TIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEI-- 634
S + G +LSGG++QR ALARA P ++L DE SALD +I
Sbjct: 125 L-----TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRE 179
Query: 635 --LNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 680
+ AL+ AN ++++F++H A+Q D I V++ G++++ S +L
Sbjct: 180 DMIAALR--ANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 105/227 (46%), Gaps = 10/227 (4%)
Query: 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518
++ ++H Y I G+ VP G+ V ++G +G+GK+T L + G I
Sbjct: 7 LEVQSLHVYYGAIHAI-KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 519 DGQDICEVTLESL-RKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHD 576
+GQDI + R I +VP+ +F + T++ N+ G + ++E +R +
Sbjct: 66 NGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKE---GIKRDL--E 120
Query: 577 TIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILN 636
I + + + + G LSGGE+Q +A+ RA P +L DE + L +E+
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFE 180
Query: 637 ALKSLANNRTSIFIAHR--LTTAMQCDEIIVLENGKVIEQGSHDDLL 681
++ + T+I + + L VLE G+++ +G +LL
Sbjct: 181 VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 114/228 (50%), Gaps = 14/228 (6%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
S+Q NV ++ E + ++ + G+ V VG SG GKST+LR++ SG +
Sbjct: 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYG-RLSATEEEVYDAARRAAIH 575
I + + + + +G+V Q L+ ++ N+ +G +L+ ++EV + R +
Sbjct: 62 IGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ-RVNQVA 118
Query: 576 DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL 635
+ + + + ++ + LSGG++QRVA+ R + P + L DE S LD+ ++
Sbjct: 119 EVL-----QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 173
Query: 636 NALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 680
+ L RT I++ H AM D+I+VL+ G+V + G +L
Sbjct: 174 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 114/228 (50%), Gaps = 14/228 (6%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
S+Q NV ++ E + ++ + G+ V VG SG GKST+LR++ SG +
Sbjct: 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYG-RLSATEEEVYDAARRAAIH 575
I + + + + +G+V Q L+ ++ N+ +G +L+ ++EV + R +
Sbjct: 62 IGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ-RVNQVA 118
Query: 576 DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL 635
+ + + + ++ + LSGG++QRVA+ R + P + L DE S LD+ ++
Sbjct: 119 EVL-----QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 173
Query: 636 NALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 680
+ L RT I++ H AM D+I+VL+ G+V + G +L
Sbjct: 174 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 25/222 (11%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV------ 526
++L GVS AG ++I+G+SGSGKST LR + G+I ++GQ+I V
Sbjct: 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 79
Query: 527 -------TLESLRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTI 578
L LR + +V Q L++ T+ N+ + +DA RA
Sbjct: 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA------ 133
Query: 579 MNFPAKYST---VVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL 635
+ + AK G+ + LSGG++QRV++ARA P +LL DE TSALD E+L
Sbjct: 134 LKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL 193
Query: 636 NALKSLANN-RTSIFIAHRLTTAMQC-DEIIVLENGKVIEQG 675
++ LA +T + + H + A +I L GK+ E+G
Sbjct: 194 RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 23/230 (10%)
Query: 459 IQFDNVHFSYLTER----KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG 514
I+ V LT+R ++ ++ + G+ + ++G SG GK+T LR++ + G
Sbjct: 7 IKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 66
Query: 515 SIRIDGQDIC-----EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAA 569
I +D+ + + + +S V P TV N I+ ++ V AA
Sbjct: 67 RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 126
Query: 570 RRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDST 629
I + + +PA+ LSGG++QRVA+ARA + P +LL DE S LD+
Sbjct: 127 ELLQIEELLNRYPAQ-----------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 175
Query: 630 TEAEILNALKSLANNR--TSIFIAHRLTTAMQC-DEIIVLENGKVIEQGS 676
+ +K L T+I++ H AM D I V+ G++++ GS
Sbjct: 176 LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 225
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 23/230 (10%)
Query: 459 IQFDNVHFSYLTER----KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG 514
I+ V LT+R ++ ++ + G+ + ++G SG GK+T LR++ + G
Sbjct: 8 IKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 67
Query: 515 SIRIDGQDIC-----EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAA 569
I +D+ + + + +S V P TV N I+ ++ V AA
Sbjct: 68 RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 127
Query: 570 RRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDST 629
I + + +PA+ LSGG++QRVA+ARA + P +LL DE S LD+
Sbjct: 128 ELLQIEELLNRYPAQ-----------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 176
Query: 630 TEAEILNALKSLANNR--TSIFIAHRLTTAMQC-DEIIVLENGKVIEQGS 676
+ +K L T+I++ H AM D I V+ G++++ GS
Sbjct: 177 LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 226
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 24/219 (10%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLESL 531
LD V+ + G+ I+G SG+GK+T +R++ +G + D + + ++ +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 532 RKSIGVVPQDTVLF-NDTIFHNIRYG--RLSATEEE----VYDAARRAAIHDTIMNFPAK 584
+ IG+V Q L+ N T F NI + + ++EE V + A+ IH + +FP +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE 140
Query: 585 YSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN- 643
LSG ++QRVALARA +K P +LL DE S LD+ +K + +
Sbjct: 141 -----------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189
Query: 644 -NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 680
T + ++H D + VL GK+++ G +DL
Sbjct: 190 LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 28/233 (12%)
Query: 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526
Y E K LDGVS V G I+G +GSGKST++ ++ G + + +DI
Sbjct: 15 KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK 74
Query: 527 TLESLRKSIGVV-----PQD----TVLFN---------DTIFHNIRYGRLSATEEEVYDA 568
L G+V PQ TVL N ++ +++ Y + EEE+ +
Sbjct: 75 EPAELY-HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEK 133
Query: 569 ARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDS 628
A + I+ F K S + + +LSGG+ + V + RA + P +++ DE + +
Sbjct: 134 AFK------ILEF-LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186
Query: 629 TTEAEILNALKSL-ANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDD 679
+I N + L A T + I HRL + D + V+ NG++I +G ++
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 28/233 (12%)
Query: 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526
Y E K LDGVS V G I+G +GSGKST++ ++ G + + +DI
Sbjct: 15 KYFGEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK 74
Query: 527 TLESLRKSIGVV-----PQD----TVLFN---------DTIFHNIRYGRLSATEEEVYDA 568
L G+V PQ TVL N ++ +++ Y + EEE+ +
Sbjct: 75 EPAELY-HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEK 133
Query: 569 ARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDS 628
A + I+ F K S + + +LSGG+ + V + RA + P +++ DE + +
Sbjct: 134 AFK------ILEF-LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186
Query: 629 TTEAEILNALKSL-ANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDD 679
+I N + L A T + I HRL + D + V+ NG++I +G ++
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 114/228 (50%), Gaps = 14/228 (6%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
S+Q NV ++ E + ++ + G+ V VG SG GKST+LR++ SG +
Sbjct: 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYG-RLSATEEEVYDAARRAAIH 575
I + + + + +G+V Q L+ ++ N+ +G +L+ ++EV + R +
Sbjct: 62 IGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ-RVNQVA 118
Query: 576 DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL 635
+ + + + ++ + LSGG++QRVA+ R + P + L D+ S LD+ ++
Sbjct: 119 EVL-----QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMR 173
Query: 636 NALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 680
+ L RT I++ H AM D+I+VL+ G+V + G +L
Sbjct: 174 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 28/233 (12%)
Query: 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526
Y E K LDGVS V G I+G +GSGKST++ ++ G + + +DI
Sbjct: 15 KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK 74
Query: 527 TLESLRKSIGVV-----PQD----TVLFN---------DTIFHNIRYGRLSATEEEVYDA 568
L G+V PQ TVL N ++ +++ Y + EEE+ +
Sbjct: 75 EPAELY-HYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEK 133
Query: 569 ARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDS 628
A + I+ F K S + + +LSGG+ + V + RA + P +++ D+ + +
Sbjct: 134 AFK------ILEF-LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAP 186
Query: 629 TTEAEILNALKSL-ANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDD 679
+I N + L A T + I HRL + D + V+ NG++I +G ++
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 108/234 (46%), Gaps = 25/234 (10%)
Query: 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518
I+ ++V F Y + +L V+ GK +VG +GSGK+T+L++L +G I +
Sbjct: 12 IELNSVSFRYNGDY-VLKDVNAEFETGKIYVVVGKNGSGKTTLLKIL-AGLLAAAGEIFL 69
Query: 519 DGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSAT-EEEVYDAARRAAIHDT 577
DG L RK++G V F N + AT EE+V + + ++
Sbjct: 70 DGSPADPFLL---RKNVGYV-----------FQNPSSQIIGATVEEDVAFSLEIMGLDES 115
Query: 578 IM-NFPAKYSTVVGERGL------KLSGGEKQRVALARAFLKAPPILLCDEATSALDSTT 630
M K +VG GL LSGG+KQR+A+A + L DE S LD +
Sbjct: 116 EMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPS 175
Query: 631 EAEILNALKSLAN-NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK 683
+ EI L+SL N + I + H L D I+ + NG + GS ++ + +
Sbjct: 176 QREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVER 229
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 103/216 (47%), Gaps = 15/216 (6%)
Query: 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----VTLESLRK 533
+S V G+ + ++G SG GK+T LR++ + G I I + + + + + +
Sbjct: 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81
Query: 534 SIGVVPQDTVLFND-TIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGE 591
I +V Q L+ T++ NI + +L + D R ++ + ++
Sbjct: 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAE--LLGL----TELLNR 135
Query: 592 RGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR--TSIF 649
+ +LSGG++QRVAL RA ++ P + L DE S LD+ + LK L T+I+
Sbjct: 136 KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY 195
Query: 650 IAHRLTTAMQCDEIIVLENGKVIEQ-GSHDDLLTKA 684
+ H AM + I + N V++Q GS D++ K
Sbjct: 196 VTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKP 231
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 15/216 (6%)
Query: 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----VTLESLRK 533
+S + G+ + ++G SG GK+T LR + + G I I+ + + V + +
Sbjct: 25 LSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPKER 84
Query: 534 SIGVVPQDTVLF-NDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGE 591
+ V Q L+ + T++ NI + +L ++ D R + + ++
Sbjct: 85 DVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGL------TELLNR 138
Query: 592 RGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR--TSIF 649
+ +LSGG++QRVAL RA ++ P + L DE S LD+ + LK L T+I+
Sbjct: 139 KPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIY 198
Query: 650 IAH-RLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA 684
+ H ++ D I V G++ + G+ D++ K
Sbjct: 199 VTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKP 234
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 29/234 (12%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
++ +N+ F Y E + ++F + G +A++G +G GKST+L LL G I
Sbjct: 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 518 IDGQDICEVTLESLRKSIGVVPQD-TVLFNDTIFHNIRYGR------LSATEEEVYDAAR 570
+ +SIG VPQ + F ++ + GR + + Y A
Sbjct: 64 V-------------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110
Query: 571 RAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTT 630
+A + + + + T LSGG++Q + +ARA ++L DE TSALD
Sbjct: 111 QALDYLNLTHLAKREFT-------SLSGGQRQLILIARAIASECKLILLDEPTSALDLAN 163
Query: 631 EAEILNALKSLA--NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLT 682
+ +L+ L LA N T +F H+ + +L N + + G ++LT
Sbjct: 164 QDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILT 217
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 33/225 (14%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF--RSFDTHSGSIRIDGQDICEVTL-ES 530
IL GV+ VVP G+ A++G +G+GKST+ ++L + G I +DG++I E++ E
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 531 LRKSIGVVPQDTVLFNDTIFHNI-------RYGRLSATEEEVYDAARRAAIHDTIMNFPA 583
RK + + Q V N + GR E + + D ++ +
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS 137
Query: 584 KYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN 643
+Y SGGEK+R + + + P + DE S LD ++ALK +A
Sbjct: 138 RYLNE------GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD-------IDALKVVAR 184
Query: 644 --------NRTSIFIAH--RLTTAMQCDEIIVLENGKVIEQGSHD 678
N ++ I H R+ +Q D++ V+ +G+V+ G +
Sbjct: 185 GVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 26/228 (11%)
Query: 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV--TLE 529
+ IL +S+ + G + G +G+GK+T+L +L SG++ + G+ +V + E
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAE 93
Query: 530 SLRKSIGVVP-------QDTVLFNDTI----FHNIRYGRLSATEEEVYDAARRAAIHDTI 578
++R+ IG V Q+ D + F +I G ++E+ + A + +
Sbjct: 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI--GVYQDIDDEIRNEAHQLL---KL 148
Query: 579 MNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNAL 638
+ AK +G LS GEKQRV +ARA P +L+ DE + LD +L+ L
Sbjct: 149 VGXSAKAQQYIG----YLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSIL 204
Query: 639 KSLANNRTS---IFIAHRLTT-AMQCDEIIVLENGKVIEQGSHDDLLT 682
SL+++ + I++ H + +I++L++G+ I+QG+ +D+LT
Sbjct: 205 DSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 109/236 (46%), Gaps = 26/236 (11%)
Query: 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI--CEV 526
+ E L +S V AG+ + +VG +G+GKST+L + + GSI+ GQ +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA-GMTSGKGSIQFAGQPLEAWSA 68
Query: 527 TLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY-DAARRAAIHDTIMNFPAKY 585
T +L ++ + Q T F ++H + + T E+ D A A+ D +
Sbjct: 69 TKLALHRAY-LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL------- 120
Query: 586 STVVGERGLKLSGGEKQRVALARAFLKAPP-------ILLCDEATSALDSTTEAEILNAL 638
G +LSGGE QRV LA L+ P +LL D+ ++LD ++ + L
Sbjct: 121 ----GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKIL 176
Query: 639 KSLANNRTSIFI-AHRLT-TAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWG 692
+L+ +I + +H L T +L+ GK++ G +++LT AQ +G
Sbjct: 177 SALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP-NLAQAYG 231
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 26/236 (11%)
Query: 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI--CEV 526
+ E L +S V AG+ + +VG +G+GKST+L + + GSI+ GQ +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA-GMTSGKGSIQFAGQPLEAWSA 68
Query: 527 TLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY-DAARRAAIHDTIMNFPAKY 585
T +L ++ + Q T F ++H + + T E+ D A A+ D +
Sbjct: 69 TKLALHRAY-LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL------- 120
Query: 586 STVVGERGLKLSGGEKQRVALARAFLKAPP-------ILLCDEATSALDSTTEAEILNAL 638
G +LSGGE QRV LA L+ P +LL D+ +LD ++ + L
Sbjct: 121 ----GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKIL 176
Query: 639 KSLANNRTSIFI-AHRLT-TAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWG 692
+L+ +I + +H L T +L+ GK++ G +++LT AQ +G
Sbjct: 177 SALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP-NLAQAYG 231
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 20/229 (8%)
Query: 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF--RSFDTHSGSIRIDG 520
++H S + ++ IL G+S V G+ AI+G +GSGKST+ L ++ G++ G
Sbjct: 6 DLHVS-VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 64
Query: 521 QDICEVTLESLRKSIGV---------VPQ-DTVLFNDTIFHNIRYGRLSATEEEVYDAAR 570
+D+ ++ E R G+ +P F T + +R R T + +D
Sbjct: 65 KDLLALSPED-RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDR-FDFQD 122
Query: 571 RAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTT 630
++ P T G SGGEK+R + + + P + + DE+ S LD
Sbjct: 123 LMEEKIALLKMPEDLLTRSVNVGF--SGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 180
Query: 631 EAEILNALKSLANNRTS-IFIAH--RLTTAMQCDEIIVLENGKVIEQGS 676
+ + + SL + + S I + H R+ ++ D + VL G++++ G
Sbjct: 181 LKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 20/228 (8%)
Query: 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF--RSFDTHSGSIRIDG 520
++H S + ++ IL G+S V G+ AI+G +GSGKST+ L ++ G++ G
Sbjct: 25 DLHVS-VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 83
Query: 521 QDICEVTLESLRKSIGV---------VPQ-DTVLFNDTIFHNIRYGRLSATEEEVYDAAR 570
+D+ ++ E R G+ +P F T + +R R T + +D
Sbjct: 84 KDLLALSPED-RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDR-FDFQD 141
Query: 571 RAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTT 630
++ P T G SGGEK+R + + + P + + DE+ S LD
Sbjct: 142 LMEEKIALLKMPEDLLTRSVNVGF--SGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 199
Query: 631 EAEILNALKSLANNRTS-IFIAH--RLTTAMQCDEIIVLENGKVIEQG 675
+ + + SL + + S I + H R+ ++ D + VL G++++ G
Sbjct: 200 LKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 30/238 (12%)
Query: 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS--GSIRIDGQDI--C 524
+ E L +S V AG+ + +VG +G+GKST LL R S GSI+ GQ +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAW 66
Query: 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY-DAARRAAIHDTIMNFPA 583
T +L ++ + Q T F ++H + + T E+ D A A+ D +
Sbjct: 67 SATKLALHRAY-LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL----- 120
Query: 584 KYSTVVGERGLKLSGGEKQRVALARAFLKAPP-------ILLCDEATSALDSTTEAEILN 636
G +LSGGE QRV LA L+ P +LL DE ++LD ++ +
Sbjct: 121 ------GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDK 174
Query: 637 ALKSLANNRTSIFI-AHRLT-TAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWG 692
L +L+ +I +H L T +L+ GK + G +++LT AQ +G
Sbjct: 175 ILSALSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPP-NLAQAYG 231
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 106/238 (44%), Gaps = 30/238 (12%)
Query: 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS--GSIRIDGQDI--C 524
+ E L +S V AG+ + +VG +G+GKST LL R S GSI+ GQ +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAW 66
Query: 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY-DAARRAAIHDTIMNFPA 583
T +L ++ + Q T F ++H + + T E+ D A A+ D +
Sbjct: 67 SATKLALHRAY-LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL----- 120
Query: 584 KYSTVVGERGLKLSGGEKQRVALARAFLKAPP-------ILLCDEATSALDSTTEAEILN 636
G +LSGGE QRV LA L+ P +LL DE ++LD ++ +
Sbjct: 121 ------GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDK 174
Query: 637 ALKSLANNRTSIFI-AHRLT-TAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWG 692
L +L +I +H L T +L+ GK + G +++LT AQ +G
Sbjct: 175 ILSALCQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPP-NLAQAYG 231
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 32/194 (16%)
Query: 463 NVHFSYLTERKIL-DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG- 520
N FS KIL + + + I G +G GKST++R + ++DG
Sbjct: 438 NCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG--------QVDGF 489
Query: 521 --QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTI 578
Q+ C + I DT + D +F + T+E + D D +
Sbjct: 490 PTQEECRTVY--VEHDIDGTHSDTSVL-DFVFES-----GVGTKEAIKDKLIEFGFTDEM 541
Query: 579 MNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNAL 638
+ P LSGG K ++ALARA L+ ILL DE T+ LD+ A ++N L
Sbjct: 542 IAMPIS----------ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 591
Query: 639 KSLANNRTSIFIAH 652
+ TSI I+H
Sbjct: 592 NTCG--ITSITISH 603
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 596 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 655
LSGG+K ++ LA + P +++ DE T+ LD + + ALK I I H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 656 -TAMQCDEIIVLENGKVIEQG 675
T +E+ +++G++ G
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSG 980
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 459 IQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516
++ N+ F Y T + + ++F +A++G +G+GKST++ +L SG +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 32/208 (15%)
Query: 488 VAIVGTSGSGKSTILRLLFRSFDTHSGSIRID-GQDICEVTLESLRKSIGVVPQDTVLFN 546
+ ++G +G+GK+T+++LL +G+++ D GQDI ++ + K + P+
Sbjct: 381 LVMMGENGTGKTTLIKLL-------AGALKPDEGQDIPKLNVSM--KPQKIAPKFPGTVR 431
Query: 547 DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606
F IR L+ T + P + ++ + LSGGE QRVA+
Sbjct: 432 QLFFKKIRGQFLNPQ-------------FQTDVVKPLRIDDIIDQEVQHLSGGELQRVAI 478
Query: 607 ARAFLKAPPILLCDEATSALDSTTEAEILNALKS--LANNRTSIFIAHRLTTAMQ-CDEI 663
A I L DE ++ LDS ++ L N +T+ + H A D++
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKV 538
Query: 664 IVLENGKVIEQGSH----DDLLTKAGRY 687
IV E + + +H + LLT R+
Sbjct: 539 IVFEG--IPSKNAHARAPESLLTGCNRF 564
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 595 KLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTE---AEILNALKSLANNRTSIFIA 651
KLSGGE QR A+ + ++ + + DE +S LD A+I+ +L LA + I +
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL--LAPTKYVICVE 278
Query: 652 HRLTT 656
H L+
Sbjct: 279 HDLSV 283
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 80/194 (41%), Gaps = 32/194 (16%)
Query: 463 NVHFSYLTERKIL-DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG- 520
N FS KIL + + + I G +G GKST+ R + ++DG
Sbjct: 438 NCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANG--------QVDGF 489
Query: 521 --QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTI 578
Q+ C + I DT + D +F + T+E + D D
Sbjct: 490 PTQEECRTVY--VEHDIDGTHSDTSVL-DFVFES-----GVGTKEAIKDKLIEFGFTDEX 541
Query: 579 MNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNAL 638
+ P LSGG K ++ALARA L+ ILL DE T+ LD+ A ++N L
Sbjct: 542 IAXPIS----------ALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 591
Query: 639 KSLANNRTSIFIAH 652
+ TSI I+H
Sbjct: 592 NTCG--ITSITISH 603
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 596 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 655
LSGG+K ++ LA + P +++ DE T+ LD + + ALK I I H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 656 -TAMQCDEIIVLENGKVIEQG 675
T +E+ +++G+ G
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSG 980
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 459 IQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516
++ N F Y T + + ++F +A++G +G+GKST++ +L SG +
Sbjct: 672 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 80/194 (41%), Gaps = 32/194 (16%)
Query: 463 NVHFSYLTERKIL-DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG- 520
N FS KIL + + + I G +G GKST+ R + ++DG
Sbjct: 432 NCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANG--------QVDGF 483
Query: 521 --QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTI 578
Q+ C + I DT + D +F + T+E + D D
Sbjct: 484 PTQEECRTVY--VEHDIDGTHSDTSVL-DFVFES-----GVGTKEAIKDKLIEFGFTDEX 535
Query: 579 MNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNAL 638
+ P LSGG K ++ALARA L+ ILL DE T+ LD+ A ++N L
Sbjct: 536 IAXPIS----------ALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 585
Query: 639 KSLANNRTSIFIAH 652
+ TSI I+H
Sbjct: 586 NTCG--ITSITISH 597
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 596 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 655
LSGG+K ++ LA + P +++ DE T+ LD + + ALK I I H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 656 -TAMQCDEIIVLENGKVIEQG 675
T +E+ +++G+ G
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSG 974
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 459 IQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516
++ N F Y T + + ++F +A++G +G+GKST++ +L SG +
Sbjct: 666 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 28/204 (13%)
Query: 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL 544
G+ + IVG +G GK+T +++L + G + D ++ PQ
Sbjct: 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTVAYKPQ---- 424
Query: 545 FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604
+ + Y LS + + + + T + P + LSGGE QRV
Sbjct: 425 YIKAEYEGTVYELLSKID----SSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRV 480
Query: 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL--ANNRTSIFIAHR-LTTAMQCD 661
A+A L+ I L DE ++ LD + A++ L N +T++ + H L D
Sbjct: 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 540
Query: 662 EIIVLENGKVIEQGSHDDLLTKAG 685
+IV E E G H L G
Sbjct: 541 RLIVFEG----EPGRHGRALPPMG 560
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 595 KLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAH 652
+LSGGE QRVA+A A L+ DE +S LD ++ ++ LAN ++ +
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 285
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 28/204 (13%)
Query: 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL 544
G+ + IVG +G GK+T +++L + G + D ++ PQ
Sbjct: 368 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTVAYKPQ---- 410
Query: 545 FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604
+ + Y LS + + + + T + P + LSGGE QRV
Sbjct: 411 YIKAEYEGTVYELLSKID----SSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRV 466
Query: 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL--ANNRTSIFIAHR-LTTAMQCD 661
A+A L+ I L DE ++ LD + A++ L N +T++ + H L D
Sbjct: 467 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 526
Query: 662 EIIVLENGKVIEQGSHDDLLTKAG 685
+IV E E G H L G
Sbjct: 527 RLIVFEG----EPGRHGRALPPMG 546
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 595 KLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAH 652
+LSGGE QRVA+A A L+ DE +S LD ++ ++ LAN ++ +
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 271
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 83/208 (39%), Gaps = 30/208 (14%)
Query: 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541
+ G+ + IVG +G GK+T ++ L + G I D ++ PQ
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD-------------LTVAYKPQ- 354
Query: 542 TVLFNDTIFHNIRYGRLSATEEEVYDAAR-RAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600
+ + Y LS DA++ + + T + P + +LSGGE
Sbjct: 355 ---YIKADYEGTVYELLSKI-----DASKLNSNFYKTELLKPLGIIDLYDREVNELSGGE 406
Query: 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHR-LTTA 657
QRVA+A L+ I L DE ++ LD + A++ L N +T++ + H L
Sbjct: 407 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXID 466
Query: 658 MQCDEIIVLENGKVIEQGSHDDLLTKAG 685
D + V E E G + L G
Sbjct: 467 YVSDRLXVFEG----EPGKYGRALPPXG 490
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 81/193 (41%), Gaps = 16/193 (8%)
Query: 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSF--------DTHSGSIRIDGQDICEVTLESLR 532
VV G V IVG +G+GKST +++L D+ G IR + + E L
Sbjct: 43 VVKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKL- 101
Query: 533 KSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGER 592
K+ + P + D I ++ G++ E + A + + + + V+
Sbjct: 102 KNGEIRPVVKPQYVDLIPKAVK-GKVI---ELLKKADETGKLEEVVKAL--ELENVLERE 155
Query: 593 GLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIA- 651
LSGGE QRVA+A A L+ DE +S LD A++ L+ S+ +
Sbjct: 156 IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215
Query: 652 HRLTTAMQCDEII 664
H L +II
Sbjct: 216 HDLAVLDYLSDII 228
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 41/204 (20%), Positives = 85/204 (41%), Gaps = 26/204 (12%)
Query: 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515
G ++ ++ Y ++ +L+ ++ + G V G +G GK+T+L+ + G
Sbjct: 8 GSKLEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 516 IRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNI------RYGRLSATEEEVYDAA 569
I +G I +V + I +P++ ++ + YG + + E+ DA
Sbjct: 66 IIYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYG-VKVNKNEIMDAL 119
Query: 570 RRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDST 629
+ D +GE LS G +RV LA L I + D+ A+D
Sbjct: 120 ESVEVLD--------LKKKLGE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 167
Query: 630 TEAEILNALKSLANNRTSIFIAHR 653
++ ++L ++ + + + I+ R
Sbjct: 168 SKHKVLKSILEILKEKGIVIISSR 191
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 589 VGERGLKLSGGEKQRVALARAFLK---APPILLCDEATSALDSTTEAEILNALKSLANN- 644
+G+ LSGGE QRV LA + + + DE T+ L A +L+ L L +N
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 596
Query: 645 RTSIFIAHRLTTAMQCDEIIVL------ENGKVIEQGSHDDLL----TKAGRY 687
T + I H L D II L G+++ G+ +++ + GRY
Sbjct: 597 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRY 649
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSF 509
L VS +P G VA+ G SGSGKST++ +L+++
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKAL 373
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 596 LSGGEKQRVALARAFLK--APPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAH 652
LSGGE QR+ LA + + DE + L ++ LKS+ + T I + H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 653 RLTTAMQCDEIIVLENGKVIEQGS 676
T + D +I + G I G
Sbjct: 263 DEDTMLAADYLIDIGPGAGIHGGE 286
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 596 LSGGEKQRVALARAF--LKAPPILLC--DEATSALDSTTEAEILNALKSLANNRTSIFIA 651
LSGGE+ A+A F LK P+ C DE +ALD LK +++ I I
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 652 HRLTTAMQCD 661
HR T + D
Sbjct: 389 HRKGTMEEAD 398
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 589 VGERGLKLSGGEKQRVALARAFLK---APPILLCDEATSALDSTTEAEILNALKSLANN- 644
+G+ LSGGE QRV LA + + + DE T+ L A +L+ L L +N
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 645 RTSIFIAHRLTTAMQCDEIIVL------ENGKVIEQGSHDDLL----TKAGRY 687
T + I H L D II L G+++ G+ +++ + GRY
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRY 951
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSF 509
L VS +P G VA+ G SGSGKST++ +L+++
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKAL 675
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 589 VGERGLKLSGGEKQRVALARAFLK---APPILLCDEATSALDSTTEAEILNALKSLANN- 644
+G+ LSGGE QRV LA + + + DE T+ L A +L+ L L +N
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 645 RTSIFIAHRLTTAMQCDEIIVL------ENGKVIEQGSHDDLL----TKAGRY 687
T + I H L D II L G+++ G+ +++ + GRY
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRY 951
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSF 509
L VS +P G VA+ G SGSGKST++ +L+++
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKAL 675
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 589 VGERGLKLSGGEKQRVALARAFLK---APPILLCDEATSALDSTTEAEILNALKSLAN-N 644
+G+ LSGGE QRV LA K + + DE T+ L ++LN + L +
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKG 916
Query: 645 RTSIFIAHRLTTAMQCDEIIVLENGK------VIEQGSHDDLLTKAGRY 687
T I I H L D II L V+ QG+ +D+ Y
Sbjct: 917 NTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAVPASY 965
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 596 LSGGEKQRVALARAFLKA--PPILLCDEATSAL---DSTTEAEILNALKSLANNRTSIFI 650
LSGGE QR+ LA + + DE + L D+ E L L+ L N T I +
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGN--TLIVV 579
Query: 651 AHRLTTAMQCDEIIVL------ENGKVIEQGSHDDLL 681
H T D I+ + G+++ G +D+LL
Sbjct: 580 EHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 22/186 (11%)
Query: 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL 544
G+ + I+G +G GK+T R+L GS+ + Q + G V Q
Sbjct: 294 GEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ---- 349
Query: 545 FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604
N LS + + +R +H + + V + LSGGE Q++
Sbjct: 350 ----YLENASKDALSTSSWFFEEVTKRLNLHRLL-------ESNVND----LSGGELQKL 394
Query: 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSI--FIAHRLTT-AMQCD 661
+A K + + D+ +S LD + A+K + R ++ I H L+ D
Sbjct: 395 YIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIAD 454
Query: 662 EIIVLE 667
IIV +
Sbjct: 455 RIIVFK 460
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 596 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRL 654
LSGG QR+ +A + L+ + + D+ +S LD + A++ L N+ I + H L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 589 VGERGLKLSGGEKQRVALARAFLK---APPILLCDEATSAL---DSTTEAEILNALKSLA 642
+G+ LSGGE QR+ LA K + + DE T L D E+L+ L
Sbjct: 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858
Query: 643 NNRTSIFIAHRLTTAMQCDEIIVL------ENGKVIEQGSHDDLLTKAGRY 687
N T I I H L D II L E G ++ G+ +++ Y
Sbjct: 859 N--TVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSY 907
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 596 LSGGEKQRVALARAFLKA--PPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAH 652
LSGGE QR+ LA I + DE T L ++ LK L + T I + H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 653 RLTTAMQCDEIIVL------ENGKVIEQGSHDDLL 681
D II + G+V+ QG+ D+LL
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 26/203 (12%)
Query: 459 IQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515
IQ NV + ER L+ ++ V G+ V I+G +GSGK+T+LR + +SG+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAI-SGLLPYSGN 59
Query: 516 IRIDGQDICEVTLESLRKSIGVVPQD---TVLFNDTIFHNIRYGRLSATEEEVYDAARRA 572
I I+G ++ ++ +R S +P+ V ND ++ Y L + +++ +A
Sbjct: 60 IFINGMEVRKIR-NYIRYSTN-LPEAYEIGVTVNDIVYL---YEELKGLDRDLFLEMLKA 114
Query: 573 AIHDTIMNFPAKYSTVVGERGL-KLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTE 631
K + R L KLS G+ V + A P I+ DE +D+
Sbjct: 115 ----------LKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164
Query: 632 AEILNALKSLANNRTSIFIAHRL 654
I +K + I + H L
Sbjct: 165 HVISRYIKEYG--KEGILVTHEL 185
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 589 VGERGLKLSGGEKQRVALA---RAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-N 644
+G+ +LSGGE QR+ LA R + + + DE T+ L + L L +
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 645 RTSIFIAHRLTTAMQCDEIIVL------ENGKVIEQGSHDDLLTKAG 685
T I + H++ D ++ + + G+++ QG+ ++ AG
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAG 830
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 23/105 (21%)
Query: 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSFDTH------------------ 512
R LD + P G ++ G SGSGKST++ + L + H
Sbjct: 510 RNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADH 569
Query: 513 -SGSIRIDGQDICEVT--LESLRKSIGVVPQDTVLFNDTIFHNIR 554
+GS R+ G D+ ++T + +K IG P+ + +F +R
Sbjct: 570 TAGSARLGG-DLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVR 613
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 596 LSGGEKQRVALARAF----LKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIA 651
LSGGEK V LA F +K P + DE S LD LK + + I I
Sbjct: 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVIT 279
Query: 652 HR------------LTTAMQCDEIIVLENGKVIEQGS 676
H +T I+ +E K++E GS
Sbjct: 280 HNKIVMEAADLLHGVTMVNGVSAIVPVEVEKILEVGS 316
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 187 IARTTASAFNELRTAVFSKVALRTIRSVSRK----------VFSHLHELDLRYHLSRETG 236
I + SA + L ++S ++ ++I + R+ V L + RYH E+
Sbjct: 196 IEKKIKSAISNLLN-IYSTLSGQSIEELERQYVFKADLAQVVIETLRPIQERYHHWMESE 254
Query: 237 ALNRIIDRGSRAINFILSSMV 257
L+R++D G+ N + S MV
Sbjct: 255 ELDRVLDEGAEKANRVASEMV 275
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 272 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 315
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 596 LSGGEKQRVALARAFLKAP------PILLCDEATSALDSTTEAEILNALKSLAN-NRTSI 648
LSGGE+ ++++ A A DE S+LD+ + +I + LK L N+ +
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
Query: 649 FIAHRLTTAMQCDEIIVLENGKVIEQ 674
FI H + D + + G V+ +
Sbjct: 340 FITHDREFSEAFDRKLRITGGVVVNE 365
>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 280
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 225 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 268
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In A Closed, Pre-Transition State
Conformation
pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp And Tryptophanamide In A
Pre-Transition State Conformation
pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
Trna Synthetase In Complex With Adenosine Tetraphosphate
Length = 328
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 218 VFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 276 VIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 315
>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 293
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 238 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 281
>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 300
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 245 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 288
>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 292
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 237 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 280
>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 297
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 242 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 285
>pdb|4H8P|A Chain A, Neat5 Domain Of Isdx2, A B. Anthracis Hemophore In Complex
With Heme
Length = 129
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 293 YVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAF 340
Y+ TL ++W TKF+ N DA + D N V++ N+ F
Sbjct: 51 YIAMTLKNSEWITKFQTEKNGGFADAKVVSEDKAANTRVVEFEANDLF 98
>pdb|4H8Q|A Chain A, Structure Of The Q29t Isdx2-neat5 Mutant In Complex With
Heme
Length = 129
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 293 YVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAF 340
Y+ TL ++W TKF+ N DA + D N V++ N+ F
Sbjct: 51 YIAMTLKNSEWITKFQTEKNGGFADAKVVSEDKAANTRVVEFEANDLF 98
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 596 LSGGEKQRVALARAFLKAP------PILLCDEATSALDSTTEAEILNALKSLAN-NRTSI 648
LSGGE+ ++++ A A DE S+LD+ + +I + LK L N+ +
Sbjct: 280 LSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
Query: 649 FIAHRLTTAMQCDEIIVLENGKVIEQ 674
FI H + D + + G V+ +
Sbjct: 340 FITHDREFSEAFDRKLRITGGVVVNE 365
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 448 NAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507
N + L ++ G+IQ LT I D + + + +VA+ G +GSGKS+ + L
Sbjct: 40 NLIELRMRAGNIQ--------LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91
Query: 508 SFDTHSGSIRIDGQDICEVTLE 529
+ G+ + + EVT+E
Sbjct: 92 IGNEEEGAAK---TGVVEVTME 110
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 448 NAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507
N + L ++ G+IQ LT I D + + + +VA+ G +GSGKS+ + L
Sbjct: 40 NLIELRMRKGNIQ--------LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91
Query: 508 SFDTHSGSIRIDGQDICEVTLE 529
+ G+ + + EVT+E
Sbjct: 92 IGNEEEGAAK---TGVVEVTME 110
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 448 NAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507
N + L ++ G+IQ LT I D + + + +VA+ G +GSGKS+ + L
Sbjct: 40 NLIELRMRKGNIQ--------LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91
Query: 508 SFDTHSGSIRIDGQDICEVTLE 529
+ G+ + + EVT+E
Sbjct: 92 IGNEEEGAAK---TGVVEVTME 110
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 448 NAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507
N + L ++ G+IQ LT I D + + + +VA+ G +GSGKS+ + L
Sbjct: 40 NLIELRMRKGNIQ--------LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91
Query: 508 SFDTHSGSIRIDGQDICEVTLE 529
+ G+ + + EVT+E
Sbjct: 92 IGNEEEGAAK---TGVVEVTME 110
>pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC6|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
Length = 314
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 443 IQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSG 497
I RDN N G+IQF V +Y+ + K D V+ P+GK + T SG
Sbjct: 115 IIKRDNIYDEN---GNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSG 166
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSG-----------SIRIDGQDICEVTLESLRKS 534
+ V + G SG+GKST+L+ LF+ + G DG+D VT E +++
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 64
Query: 535 IGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAAR 570
I D I H G L T +E A +
Sbjct: 65 IAA--------GDFIEHAEFSGNLYGTSKEAVRAVQ 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,284,816
Number of Sequences: 62578
Number of extensions: 644499
Number of successful extensions: 4224
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3951
Number of HSP's gapped (non-prelim): 184
length of query: 709
length of database: 14,973,337
effective HSP length: 106
effective length of query: 603
effective length of database: 8,340,069
effective search space: 5029061607
effective search space used: 5029061607
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)