Query 005205
Match_columns 709
No_of_seqs 384 out of 2827
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 19:46:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005205.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005205hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 7E-123 2E-127 1025.2 67.7 572 106-697 133-707 (716)
2 COG2274 SunT ABC-type bacterio 100.0 4E-113 8E-118 984.8 73.4 607 56-694 92-708 (709)
3 KOG0057 Mitochondrial Fe/S clu 100.0 7E-111 1E-115 900.0 61.5 580 105-697 10-589 (591)
4 KOG0056 Heavy metal exporter H 100.0 3E-113 7E-118 896.7 36.1 578 108-696 198-776 (790)
5 KOG0055 Multidrug/pheromone ex 100.0 1E-108 2E-113 958.9 70.8 572 107-695 651-1226(1228)
6 TIGR01193 bacteriocin_ABC ABC- 100.0 5E-103 1E-107 925.2 76.7 604 56-692 92-707 (708)
7 COG1132 MdlB ABC-type multidru 100.0 2E-102 3E-107 899.6 75.9 552 126-696 15-566 (567)
8 PRK11174 cysteine/glutathione 100.0 2E-102 5E-107 902.4 76.7 570 107-697 9-587 (588)
9 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2E-102 5E-107 920.2 75.8 602 56-691 92-709 (710)
10 COG5265 ATM1 ABC-type transpor 100.0 2E-105 4E-110 832.5 41.1 494 199-692 2-496 (497)
11 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4E-101 9E-106 906.1 78.4 596 56-694 78-685 (686)
12 TIGR03375 type_I_sec_LssB type 100.0 2E-100 4E-105 901.6 76.7 598 56-683 79-689 (694)
13 TIGR01846 type_I_sec_HlyB type 100.0 2.2E-98 5E-103 883.3 78.0 605 56-695 78-693 (694)
14 TIGR00958 3a01208 Conjugate Tr 100.0 3.8E-98 8E-103 881.1 75.5 563 106-691 147-711 (711)
15 KOG0055 Multidrug/pheromone ex 100.0 2E-100 4E-105 889.5 55.0 503 194-697 86-591 (1228)
16 PTZ00265 multidrug resistance 100.0 4.8E-98 1E-102 926.6 75.9 565 108-694 813-1465(1466)
17 PRK11160 cysteine/glutathione 100.0 1.5E-96 3E-101 849.2 76.2 566 109-693 5-573 (574)
18 PRK11176 lipid transporter ATP 100.0 7.8E-96 2E-100 847.2 77.3 569 105-695 10-580 (582)
19 PRK10790 putative multidrug tr 100.0 3.6E-95 8E-100 842.7 78.1 570 105-697 8-578 (592)
20 COG4988 CydD ABC-type transpor 100.0 1.9E-94 4.1E-99 786.0 70.5 549 132-696 7-557 (559)
21 PRK13657 cyclic beta-1,2-gluca 100.0 3E-93 6.6E-98 825.6 78.8 568 106-696 5-572 (588)
22 TIGR01192 chvA glucan exporter 100.0 1.8E-92 3.8E-97 816.5 78.5 566 107-695 6-571 (585)
23 TIGR02203 MsbA_lipidA lipid A 100.0 2.1E-92 4.6E-97 817.1 76.4 557 122-695 11-569 (571)
24 TIGR02868 CydC thiol reductant 100.0 7.4E-93 1.6E-97 813.0 70.3 524 110-654 3-529 (529)
25 PRK10789 putative multidrug tr 100.0 8.4E-92 1.8E-96 809.3 72.3 547 135-696 5-552 (569)
26 TIGR02204 MsbA_rel ABC transpo 100.0 1.2E-90 2.7E-95 803.0 76.3 567 108-694 6-575 (576)
27 TIGR00957 MRP_assoc_pro multi 100.0 2.9E-91 6.4E-96 874.6 74.3 495 194-693 1020-1519(1522)
28 PLN03130 ABC transporter C fam 100.0 1.5E-90 3.3E-95 867.2 75.5 506 193-705 967-1486(1622)
29 COG4987 CydC ABC-type transpor 100.0 6.9E-90 1.5E-94 737.8 65.1 555 124-693 15-572 (573)
30 TIGR02857 CydD thiol reductant 100.0 1.1E-88 2.4E-93 778.5 70.7 526 125-666 3-529 (529)
31 PLN03232 ABC transporter C fam 100.0 5.5E-89 1.2E-93 853.0 74.1 505 193-703 964-1481(1495)
32 PTZ00243 ABC transporter; Prov 100.0 1.9E-88 4.2E-93 847.2 76.0 494 199-695 1018-1547(1560)
33 TIGR01842 type_I_sec_PrtD type 100.0 2.5E-87 5.4E-92 769.0 73.3 537 123-683 4-543 (544)
34 PTZ00265 multidrug resistance 100.0 9.9E-88 2.1E-92 834.6 73.5 565 108-695 47-729 (1466)
35 KOG0054 Multidrug resistance-a 100.0 3.4E-85 7.3E-90 779.4 60.1 495 191-692 870-1373(1381)
36 TIGR01271 CFTR_protein cystic 100.0 1.9E-83 4E-88 802.0 74.1 495 194-694 940-1452(1490)
37 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.1E-81 2.3E-86 722.9 66.7 531 108-674 5-551 (555)
38 PLN03232 ABC transporter C fam 100.0 9.4E-81 2E-85 779.0 74.2 536 124-695 300-841 (1495)
39 COG4618 ArpD ABC-type protease 100.0 6.5E-81 1.4E-85 662.4 52.8 537 124-683 22-561 (580)
40 PLN03130 ABC transporter C fam 100.0 1.7E-79 3.8E-84 767.6 74.7 537 124-694 300-840 (1622)
41 PRK10522 multidrug transporter 100.0 6.3E-76 1.4E-80 674.8 67.4 523 122-682 10-539 (547)
42 TIGR00957 MRP_assoc_pro multi 100.0 4.1E-72 8.9E-77 702.1 75.1 550 106-694 306-862 (1522)
43 KOG0054 Multidrug resistance-a 100.0 1.1E-72 2.3E-77 672.4 65.4 537 124-693 200-742 (1381)
44 TIGR00954 3a01203 Peroxysomal 100.0 1.6E-71 3.4E-76 647.9 66.7 537 105-668 76-653 (659)
45 TIGR01271 CFTR_protein cystic 100.0 4.7E-68 1E-72 663.6 73.9 533 124-692 79-646 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 1.2E-65 2.5E-70 642.4 72.6 549 105-693 232-880 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.9E-58 6.3E-63 481.2 29.3 236 457-694 1-237 (275)
48 PRK14257 phosphate ABC transpo 100.0 2.5E-54 5.4E-59 462.7 27.8 223 454-683 76-314 (329)
49 cd03252 ABCC_Hemolysin The ABC 100.0 1.4E-52 3.1E-57 431.3 28.3 235 459-693 1-236 (237)
50 COG1126 GlnQ ABC-type polar am 100.0 7.4E-53 1.6E-57 406.6 22.0 215 458-684 2-227 (240)
51 cd03288 ABCC_SUR2 The SUR doma 100.0 1.7E-51 3.6E-56 428.3 29.3 238 456-694 17-256 (257)
52 cd03253 ABCC_ATM1_transporter 100.0 2.6E-51 5.7E-56 421.6 28.4 235 459-693 1-235 (236)
53 cd03254 ABCC_Glucan_exporter_l 100.0 7.5E-51 1.6E-55 416.3 27.8 228 457-684 1-228 (229)
54 COG1135 AbcC ABC-type metal io 100.0 1.4E-51 3E-56 417.0 21.6 223 459-692 2-243 (339)
55 COG1117 PstB ABC-type phosphat 100.0 1.5E-51 3.2E-56 395.5 19.3 218 458-683 7-238 (253)
56 cd03251 ABCC_MsbA MsbA is an e 100.0 1.4E-50 3E-55 415.7 27.4 232 459-690 1-233 (234)
57 COG1125 OpuBA ABC-type proline 100.0 3.6E-51 7.8E-56 402.1 19.0 213 459-683 2-226 (309)
58 cd03244 ABCC_MRP_domain2 Domai 100.0 3.9E-50 8.4E-55 408.8 26.8 219 457-676 1-220 (221)
59 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 5.4E-50 1.2E-54 412.4 27.7 235 459-693 1-237 (238)
60 PRK13631 cbiO cobalt transport 100.0 9.2E-50 2E-54 426.2 28.6 218 458-682 21-265 (320)
61 cd03245 ABCC_bacteriocin_expor 100.0 5.1E-49 1.1E-53 400.3 26.9 218 458-675 2-220 (220)
62 TIGR02314 ABC_MetN D-methionin 100.0 2.6E-49 5.6E-54 424.9 25.2 224 459-693 2-243 (343)
63 cd03261 ABC_Org_Solvent_Resist 100.0 5.2E-49 1.1E-53 404.3 23.8 218 459-688 1-232 (235)
64 cd03260 ABC_PstB_phosphate_tra 100.0 1.3E-48 2.7E-53 399.4 22.2 212 459-680 1-227 (227)
65 COG1120 FepC ABC-type cobalami 100.0 1.1E-48 2.4E-53 396.5 21.2 214 458-683 2-229 (258)
66 COG1124 DppF ABC-type dipeptid 100.0 2.5E-48 5.5E-53 382.8 21.9 224 458-692 3-243 (252)
67 COG1122 CbiO ABC-type cobalt t 100.0 2.8E-48 6E-53 393.6 22.6 215 458-683 3-229 (235)
68 cd03248 ABCC_TAP TAP, the Tran 100.0 6.2E-48 1.3E-52 394.0 25.1 216 456-671 9-226 (226)
69 COG4178 ABC-type uncharacteriz 100.0 3.1E-44 6.7E-49 398.9 56.4 454 196-667 103-587 (604)
70 PRK14269 phosphate ABC transpo 100.0 5.1E-48 1.1E-52 399.7 24.4 218 458-683 2-231 (246)
71 PRK13650 cbiO cobalt transport 100.0 6.9E-48 1.5E-52 405.6 25.1 216 458-684 4-231 (279)
72 PRK13647 cbiO cobalt transport 100.0 1.2E-47 2.5E-52 402.8 25.3 213 458-681 4-226 (274)
73 COG3839 MalK ABC-type sugar tr 100.0 6.4E-48 1.4E-52 405.4 23.0 212 458-683 3-224 (338)
74 cd03219 ABC_Mj1267_LivG_branch 100.0 1E-47 2.2E-52 394.9 24.0 222 459-683 1-233 (236)
75 COG3840 ThiQ ABC-type thiamine 100.0 7.6E-48 1.7E-52 360.6 20.3 211 459-685 2-222 (231)
76 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.6E-47 5.6E-52 384.1 25.7 202 457-677 5-207 (207)
77 cd03256 ABC_PhnC_transporter A 100.0 1.3E-47 2.9E-52 395.3 23.8 212 459-681 1-233 (241)
78 cd03291 ABCC_CFTR1 The CFTR su 100.0 9.7E-47 2.1E-51 395.7 30.4 241 431-691 15-256 (282)
79 PRK11650 ugpC glycerol-3-phosp 100.0 1.7E-47 3.6E-52 414.0 24.9 213 458-683 3-225 (356)
80 PRK11153 metN DL-methionine tr 100.0 2.2E-47 4.8E-52 412.3 25.3 223 459-692 2-242 (343)
81 COG1136 SalX ABC-type antimicr 100.0 3.2E-47 6.9E-52 378.7 24.3 205 459-673 2-222 (226)
82 PRK14242 phosphate transporter 100.0 2.6E-47 5.6E-52 396.1 24.4 218 458-683 6-238 (253)
83 cd03263 ABC_subfamily_A The AB 100.0 1.9E-47 4.1E-52 388.7 23.0 210 459-680 1-219 (220)
84 PRK13635 cbiO cobalt transport 100.0 2.8E-47 6.1E-52 400.8 24.9 218 458-686 5-233 (279)
85 PRK14250 phosphate ABC transpo 100.0 7E-47 1.5E-51 389.9 27.4 223 458-691 3-231 (241)
86 PRK14273 phosphate ABC transpo 100.0 2.6E-47 5.7E-52 396.2 24.1 218 458-683 7-239 (254)
87 TIGR00960 3a0501s02 Type II (G 100.0 1.3E-47 2.9E-52 388.8 21.0 202 459-671 2-216 (216)
88 TIGR02315 ABC_phnC phosphonate 100.0 2.8E-47 6E-52 393.5 23.8 212 459-681 2-234 (243)
89 cd03296 ABC_CysA_sulfate_impor 100.0 3.2E-47 7E-52 392.0 23.6 212 458-683 2-227 (239)
90 TIGR00972 3a0107s01c2 phosphat 100.0 2.9E-47 6.2E-52 394.3 23.3 217 459-683 2-233 (247)
91 PRK13636 cbiO cobalt transport 100.0 5.4E-47 1.2E-51 399.6 25.4 218 458-686 5-235 (283)
92 cd03224 ABC_TM1139_LivF_branch 100.0 4.3E-47 9.3E-52 386.7 23.6 217 459-682 1-221 (222)
93 PRK10744 pstB phosphate transp 100.0 7.9E-47 1.7E-51 393.9 26.1 219 457-683 12-245 (260)
94 PRK13646 cbiO cobalt transport 100.0 1.1E-46 2.3E-51 398.0 27.3 221 458-685 2-238 (286)
95 cd03258 ABC_MetN_methionine_tr 100.0 5.2E-47 1.1E-51 389.0 24.1 214 459-683 2-231 (233)
96 PRK13637 cbiO cobalt transport 100.0 4.4E-47 9.5E-52 400.9 24.2 217 458-683 2-235 (287)
97 PRK13643 cbiO cobalt transport 100.0 6.6E-47 1.4E-51 399.8 25.4 215 459-683 2-234 (288)
98 COG1127 Ttg2A ABC-type transpo 100.0 6E-47 1.3E-51 371.1 23.1 224 458-693 8-247 (263)
99 PRK13652 cbiO cobalt transport 100.0 8E-47 1.7E-51 397.2 25.4 217 458-685 3-230 (277)
100 PRK11432 fbpC ferric transport 100.0 5.3E-47 1.1E-51 409.0 24.3 212 458-683 6-227 (351)
101 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.7E-46 3.7E-51 385.9 26.7 216 459-683 2-222 (236)
102 cd03250 ABCC_MRP_domain1 Domai 100.0 8.5E-47 1.9E-51 379.5 23.8 198 459-670 1-204 (204)
103 PRK14267 phosphate ABC transpo 100.0 7.9E-47 1.7E-51 392.4 24.3 218 458-683 4-238 (253)
104 cd03259 ABC_Carb_Solutes_like 100.0 3.4E-47 7.3E-52 385.0 20.9 203 459-675 1-213 (213)
105 TIGR01186 proV glycine betaine 100.0 4.6E-47 1E-51 409.6 23.0 203 470-683 4-220 (363)
106 PRK13642 cbiO cobalt transport 100.0 1.5E-46 3.3E-51 395.2 26.0 217 458-685 4-232 (277)
107 PRK14235 phosphate transporter 100.0 1.2E-46 2.5E-51 394.0 25.1 220 456-683 17-252 (267)
108 COG1116 TauB ABC-type nitrate/ 100.0 5.5E-47 1.2E-51 376.9 21.0 198 458-672 3-212 (248)
109 cd03295 ABC_OpuCA_Osmoprotecti 100.0 7.1E-47 1.5E-51 390.2 22.2 218 459-683 1-226 (242)
110 PRK13632 cbiO cobalt transport 100.0 1.5E-46 3.3E-51 394.0 25.0 216 458-684 7-233 (271)
111 cd03226 ABC_cobalt_CbiO_domain 100.0 5.6E-47 1.2E-51 381.1 20.6 199 460-672 1-205 (205)
112 PRK13633 cobalt transporter AT 100.0 1.4E-46 3E-51 396.0 24.5 217 458-685 4-236 (280)
113 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.4E-46 3.1E-51 379.2 23.4 210 458-683 4-228 (254)
114 PRK13634 cbiO cobalt transport 100.0 3.7E-46 8E-51 394.4 27.5 217 458-684 2-237 (290)
115 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 6.5E-47 1.4E-51 384.3 20.7 202 459-671 1-218 (218)
116 COG2884 FtsE Predicted ATPase 100.0 4.3E-47 9.4E-52 358.5 17.8 208 459-677 2-221 (223)
117 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.2E-46 2.6E-51 394.2 23.0 218 460-689 26-258 (269)
118 PRK13644 cbiO cobalt transport 100.0 2.2E-46 4.8E-51 393.1 25.0 214 459-683 2-225 (274)
119 PRK14236 phosphate transporter 100.0 2.4E-46 5.2E-51 392.7 25.1 219 457-683 24-257 (272)
120 PRK14247 phosphate ABC transpo 100.0 2.3E-46 5E-51 388.3 24.5 218 458-683 3-235 (250)
121 COG4615 PvdE ABC-type sideroph 100.0 2.9E-43 6.4E-48 363.4 47.1 459 198-675 67-530 (546)
122 TIGR03265 PhnT2 putative 2-ami 100.0 1.6E-46 3.6E-51 405.8 24.2 213 458-684 4-226 (353)
123 PRK14251 phosphate ABC transpo 100.0 1.8E-46 3.8E-51 389.4 23.6 219 458-684 4-237 (251)
124 TIGR03005 ectoine_ehuA ectoine 100.0 2E-46 4.4E-51 389.2 23.9 213 459-683 1-237 (252)
125 cd03264 ABC_drug_resistance_li 100.0 1.6E-46 3.4E-51 379.6 22.5 203 459-675 1-211 (211)
126 COG3638 ABC-type phosphate/pho 100.0 1.1E-46 2.4E-51 368.2 20.6 222 458-692 3-245 (258)
127 PRK10575 iron-hydroxamate tran 100.0 2.8E-46 6E-51 390.8 25.1 222 458-692 11-246 (265)
128 PRK11629 lolD lipoprotein tran 100.0 1.8E-46 3.9E-51 385.0 23.2 208 458-676 5-228 (233)
129 PRK14248 phosphate ABC transpo 100.0 2.5E-46 5.3E-51 392.0 24.4 218 458-683 21-253 (268)
130 PRK14239 phosphate transporter 100.0 2.7E-46 5.7E-51 388.3 24.4 218 458-683 5-237 (252)
131 PRK09536 btuD corrinoid ABC tr 100.0 2.6E-46 5.6E-51 408.6 25.3 222 458-692 3-237 (402)
132 cd03218 ABC_YhbG The ABC trans 100.0 2.5E-46 5.4E-51 383.7 23.6 216 459-682 1-222 (232)
133 PRK14240 phosphate transporter 100.0 2.8E-46 6E-51 387.7 24.2 219 457-683 2-235 (250)
134 PRK14274 phosphate ABC transpo 100.0 2.9E-46 6.3E-51 389.5 24.3 218 458-683 12-244 (259)
135 PRK10851 sulfate/thiosulfate t 100.0 2.7E-46 5.8E-51 404.2 24.7 212 458-683 2-227 (353)
136 PRK14245 phosphate ABC transpo 100.0 2.4E-46 5.2E-51 388.1 23.4 218 458-683 3-235 (250)
137 PRK14237 phosphate transporter 100.0 4.1E-46 8.8E-51 389.9 25.2 219 457-683 19-252 (267)
138 cd03290 ABCC_SUR1_N The SUR do 100.0 4.3E-46 9.2E-51 378.3 24.6 210 460-670 2-218 (218)
139 PRK13640 cbiO cobalt transport 100.0 4.4E-46 9.5E-51 392.5 25.5 216 457-683 4-233 (282)
140 TIGR02673 FtsE cell division A 100.0 1.7E-46 3.7E-51 380.1 21.5 201 459-670 2-214 (214)
141 PRK11231 fecE iron-dicitrate t 100.0 3.9E-46 8.4E-51 387.7 24.7 223 459-694 3-238 (255)
142 PRK14244 phosphate ABC transpo 100.0 1.5E-46 3.3E-51 389.8 21.5 217 459-683 6-238 (251)
143 cd03266 ABC_NatA_sodium_export 100.0 3E-46 6.4E-51 379.5 23.1 205 459-675 2-218 (218)
144 cd03268 ABC_BcrA_bacitracin_re 100.0 3E-46 6.5E-51 376.7 22.7 203 459-675 1-208 (208)
145 PRK14271 phosphate ABC transpo 100.0 1E-45 2.2E-50 388.3 27.6 222 458-683 21-252 (276)
146 cd03292 ABC_FtsE_transporter F 100.0 2.4E-46 5.3E-51 378.9 21.9 202 459-671 1-214 (214)
147 TIGR02769 nickel_nikE nickel i 100.0 4.3E-46 9.2E-51 389.4 24.4 222 459-691 3-250 (265)
148 TIGR03410 urea_trans_UrtE urea 100.0 2.5E-46 5.4E-51 383.2 22.2 212 459-681 1-220 (230)
149 PRK11124 artP arginine transpo 100.0 4.4E-46 9.6E-51 384.3 24.1 218 458-683 2-231 (242)
150 PRK13648 cbiO cobalt transport 100.0 5.4E-46 1.2E-50 389.5 25.0 217 458-685 7-234 (269)
151 TIGR02211 LolD_lipo_ex lipopro 100.0 3.3E-46 7.2E-51 379.9 22.6 203 459-672 2-220 (221)
152 PRK14268 phosphate ABC transpo 100.0 4.5E-46 9.7E-51 387.8 23.9 218 458-683 12-243 (258)
153 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.2E-46 4.8E-51 380.9 21.1 203 459-677 1-218 (220)
154 cd03301 ABC_MalK_N The N-termi 100.0 3.1E-46 6.7E-51 377.9 21.9 203 459-675 1-213 (213)
155 COG3842 PotA ABC-type spermidi 100.0 1.3E-46 2.8E-51 397.6 19.7 213 458-684 5-228 (352)
156 PRK09452 potA putrescine/sperm 100.0 6.5E-46 1.4E-50 403.2 25.8 212 458-683 14-235 (375)
157 PRK14249 phosphate ABC transpo 100.0 8.9E-46 1.9E-50 384.1 25.6 218 458-683 4-236 (251)
158 PRK09493 glnQ glutamine ABC tr 100.0 5.8E-46 1.3E-50 382.9 24.0 217 459-683 2-226 (240)
159 PRK11264 putative amino-acid A 100.0 1.6E-45 3.5E-50 381.9 27.5 217 459-683 4-234 (250)
160 cd03265 ABC_DrrA DrrA is the A 100.0 5.7E-46 1.2E-50 377.9 23.7 209 459-680 1-219 (220)
161 PRK10619 histidine/lysine/argi 100.0 8.4E-46 1.8E-50 385.6 25.4 216 457-683 4-242 (257)
162 PRK14256 phosphate ABC transpo 100.0 1.1E-45 2.4E-50 383.6 25.9 219 457-683 3-237 (252)
163 PRK11000 maltose/maltodextrin 100.0 6.5E-46 1.4E-50 404.1 25.1 212 458-683 3-224 (369)
164 TIGR03411 urea_trans_UrtD urea 100.0 8.2E-46 1.8E-50 382.3 24.6 222 458-682 2-231 (242)
165 PRK15079 oligopeptide ABC tran 100.0 6.4E-46 1.4E-50 398.1 24.6 225 458-692 8-263 (331)
166 PRK11614 livF leucine/isoleuci 100.0 7.6E-46 1.6E-50 381.3 24.1 219 458-683 5-227 (237)
167 TIGR03258 PhnT 2-aminoethylpho 100.0 5.8E-46 1.2E-50 402.2 24.3 213 457-683 4-229 (362)
168 PRK14262 phosphate ABC transpo 100.0 7.6E-46 1.7E-50 384.4 24.1 218 458-683 3-235 (250)
169 PRK11831 putative ABC transpor 100.0 9.9E-46 2.1E-50 387.4 25.2 223 458-692 7-244 (269)
170 PRK13651 cobalt transporter AT 100.0 7.7E-46 1.7E-50 393.7 24.7 216 458-683 2-255 (305)
171 PRK14259 phosphate ABC transpo 100.0 1.6E-45 3.5E-50 385.7 26.6 219 457-683 12-254 (269)
172 PRK14261 phosphate ABC transpo 100.0 1.2E-45 2.6E-50 383.6 25.2 218 458-683 6-238 (253)
173 cd03247 ABCC_cytochrome_bd The 100.0 6E-46 1.3E-50 365.3 21.5 177 459-675 1-178 (178)
174 PRK13649 cbiO cobalt transport 100.0 1.9E-45 4.2E-50 387.6 26.8 219 458-683 2-235 (280)
175 PRK14254 phosphate ABC transpo 100.0 2.4E-45 5.3E-50 387.1 27.3 219 457-683 38-270 (285)
176 cd03225 ABC_cobalt_CbiO_domain 100.0 4.3E-46 9.4E-51 376.3 20.7 200 460-670 1-211 (211)
177 PRK10908 cell division protein 100.0 1.1E-45 2.3E-50 376.5 23.5 203 459-672 2-216 (222)
178 PRK14238 phosphate transporter 100.0 1.5E-45 3.4E-50 386.2 25.4 218 458-683 24-256 (271)
179 PRK13645 cbiO cobalt transport 100.0 2.1E-45 4.5E-50 389.0 26.5 221 457-683 5-241 (289)
180 PRK13638 cbiO cobalt transport 100.0 1.1E-45 2.5E-50 387.4 24.3 214 459-684 2-227 (271)
181 cd03257 ABC_NikE_OppD_transpor 100.0 1.9E-45 4.1E-50 376.0 25.2 210 459-675 2-228 (228)
182 PRK13639 cbiO cobalt transport 100.0 1E-45 2.2E-50 388.4 23.7 214 459-683 2-227 (275)
183 PRK14253 phosphate ABC transpo 100.0 1.2E-45 2.7E-50 382.6 23.9 218 458-683 3-234 (249)
184 cd03300 ABC_PotA_N PotA is an 100.0 7.7E-46 1.7E-50 380.0 21.9 211 459-683 1-221 (232)
185 PRK14243 phosphate transporter 100.0 2E-45 4.4E-50 384.0 25.3 218 458-683 10-249 (264)
186 PRK14270 phosphate ABC transpo 100.0 2.1E-45 4.5E-50 381.3 25.2 218 458-683 4-236 (251)
187 TIGR00968 3a0106s01 sulfate AB 100.0 2E-45 4.3E-50 378.1 24.7 211 459-683 1-221 (237)
188 PRK11300 livG leucine/isoleuci 100.0 2.4E-45 5.3E-50 381.7 25.5 221 458-683 5-244 (255)
189 PRK11247 ssuB aliphatic sulfon 100.0 1.7E-45 3.8E-50 382.1 24.3 204 458-678 12-219 (257)
190 PRK10895 lipopolysaccharide AB 100.0 2.1E-45 4.5E-50 379.1 24.6 218 458-683 3-227 (241)
191 PRK10070 glycine betaine trans 100.0 1.7E-45 3.7E-50 401.9 25.2 209 473-692 42-266 (400)
192 PRK10247 putative ABC transpor 100.0 1E-45 2.2E-50 377.3 21.9 209 458-678 7-223 (225)
193 PRK10584 putative ABC transpor 100.0 1.5E-45 3.3E-50 376.8 23.3 206 458-674 6-227 (228)
194 PRK14260 phosphate ABC transpo 100.0 1.5E-45 3.3E-50 384.0 23.6 218 458-683 7-244 (259)
195 PRK10771 thiQ thiamine transpo 100.0 3.4E-45 7.5E-50 375.2 25.8 210 459-684 2-221 (232)
196 TIGR03873 F420-0_ABC_ATP propo 100.0 2.1E-45 4.6E-50 382.4 24.5 221 459-692 2-235 (256)
197 cd03235 ABC_Metallic_Cations A 100.0 6.8E-46 1.5E-50 375.5 20.1 198 460-675 1-213 (213)
198 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.1E-45 4.6E-50 371.3 23.5 201 459-675 1-211 (211)
199 PRK13548 hmuV hemin importer A 100.0 4.1E-45 8.9E-50 380.4 26.0 214 458-683 2-231 (258)
200 PRK14252 phosphate ABC transpo 100.0 3.8E-45 8.3E-50 382.3 25.8 219 456-682 14-249 (265)
201 PRK15112 antimicrobial peptide 100.0 3.5E-45 7.7E-50 382.8 25.5 226 458-694 4-253 (267)
202 PRK13537 nodulation ABC transp 100.0 2.5E-45 5.5E-50 390.4 24.5 217 458-683 7-228 (306)
203 PRK14266 phosphate ABC transpo 100.0 3.6E-45 7.9E-50 379.3 25.1 218 458-683 3-235 (250)
204 PRK14241 phosphate transporter 100.0 2.6E-45 5.6E-50 382.1 24.0 218 458-683 4-243 (258)
205 PRK13641 cbiO cobalt transport 100.0 5.1E-45 1.1E-49 385.4 26.2 219 458-683 2-235 (287)
206 PRK14263 phosphate ABC transpo 100.0 4.5E-45 9.8E-50 380.5 25.3 218 458-683 8-246 (261)
207 PRK10419 nikE nickel transport 100.0 3.5E-45 7.5E-50 383.0 24.4 242 458-703 3-262 (268)
208 PRK11308 dppF dipeptide transp 100.0 5.5E-45 1.2E-49 390.6 26.3 226 458-693 5-257 (327)
209 PRK09473 oppD oligopeptide tra 100.0 7.8E-45 1.7E-49 389.9 27.4 231 458-692 12-263 (330)
210 PRK11607 potG putrescine trans 100.0 3.8E-45 8.2E-50 397.9 25.2 213 458-684 19-241 (377)
211 PRK14275 phosphate ABC transpo 100.0 5E-45 1.1E-49 385.1 25.3 219 457-683 38-271 (286)
212 cd03262 ABC_HisP_GlnQ_permease 100.0 1.8E-45 4E-50 372.2 21.0 205 459-671 1-213 (213)
213 PRK11022 dppD dipeptide transp 100.0 3.8E-45 8.3E-50 391.9 24.5 227 458-692 3-255 (326)
214 PRK10253 iron-enterobactin tra 100.0 4.6E-45 9.9E-50 381.6 24.5 222 458-692 7-242 (265)
215 TIGR01288 nodI ATP-binding ABC 100.0 4.2E-45 9.2E-50 388.9 24.1 217 458-683 4-225 (303)
216 PRK14258 phosphate ABC transpo 100.0 6.1E-45 1.3E-49 379.9 24.3 219 457-683 6-246 (261)
217 PRK14255 phosphate ABC transpo 100.0 5.3E-45 1.1E-49 378.5 23.6 218 458-683 5-237 (252)
218 PRK14272 phosphate ABC transpo 100.0 6.6E-45 1.4E-49 377.8 24.4 218 458-683 4-237 (252)
219 PRK09984 phosphonate/organopho 100.0 7.2E-45 1.6E-49 379.6 24.5 226 458-697 4-255 (262)
220 TIGR01978 sufC FeS assembly AT 100.0 5.3E-45 1.1E-49 376.4 23.1 212 459-681 1-233 (243)
221 TIGR03415 ABC_choXWV_ATP choli 100.0 5.2E-45 1.1E-49 395.3 24.1 210 471-691 36-264 (382)
222 cd03246 ABCC_Protease_Secretio 100.0 5.1E-45 1.1E-49 357.0 21.3 171 459-671 1-173 (173)
223 cd03299 ABC_ModC_like Archeal 100.0 8.4E-45 1.8E-49 373.0 23.9 210 459-683 1-220 (235)
224 TIGR01277 thiQ thiamine ABC tr 100.0 9.9E-45 2.2E-49 367.0 24.1 202 459-676 1-212 (213)
225 PRK14264 phosphate ABC transpo 100.0 1.2E-44 2.5E-49 385.5 25.7 219 457-683 44-290 (305)
226 cd03269 ABC_putative_ATPase Th 100.0 3.8E-45 8.3E-50 369.2 20.7 205 459-675 1-210 (210)
227 TIGR03522 GldA_ABC_ATP gliding 100.0 1.4E-44 3E-49 384.5 25.7 217 458-683 2-222 (301)
228 PRK14265 phosphate ABC transpo 100.0 1.9E-44 4.2E-49 378.4 26.1 219 457-683 19-259 (274)
229 PRK11701 phnK phosphonate C-P 100.0 1.6E-44 3.4E-49 376.3 25.0 225 458-689 6-249 (258)
230 PRK14246 phosphate ABC transpo 100.0 9.9E-45 2.2E-49 377.1 23.2 226 458-691 10-251 (257)
231 PRK13547 hmuV hemin importer A 100.0 1.5E-44 3.2E-49 378.2 24.3 213 459-683 2-245 (272)
232 cd03234 ABCG_White The White s 100.0 8.6E-45 1.9E-49 370.8 21.7 212 459-675 4-226 (226)
233 PRK11144 modC molybdate transp 100.0 1.5E-44 3.2E-49 391.6 24.4 211 459-684 2-220 (352)
234 PRK10418 nikD nickel transport 100.0 2.3E-44 5E-49 374.1 24.5 226 458-695 4-245 (254)
235 PRK15093 antimicrobial peptide 100.0 2.6E-44 5.7E-49 386.6 25.2 228 458-693 3-261 (330)
236 TIGR02982 heterocyst_DevA ABC 100.0 1.9E-44 4.1E-49 366.8 22.2 202 459-671 2-219 (220)
237 PRK13536 nodulation factor exp 100.0 2.9E-44 6.2E-49 386.5 24.6 217 458-683 41-262 (340)
238 TIGR01188 drrA daunorubicin re 100.0 2.5E-44 5.5E-49 382.8 21.9 204 467-683 2-214 (302)
239 PRK11248 tauB taurine transpor 100.0 5.7E-44 1.2E-48 371.0 23.2 202 459-677 2-215 (255)
240 TIGR02142 modC_ABC molybdenum 100.0 6.7E-44 1.4E-48 387.0 24.5 208 463-684 4-223 (354)
241 PRK09580 sufC cysteine desulfu 100.0 9.7E-44 2.1E-48 368.2 21.7 219 459-680 2-233 (248)
242 TIGR03740 galliderm_ABC gallid 100.0 1.6E-43 3.5E-48 360.7 22.8 205 459-679 1-210 (223)
243 cd03229 ABC_Class3 This class 100.0 1.3E-43 2.7E-48 348.7 20.9 172 459-670 1-178 (178)
244 cd03230 ABC_DR_subfamily_A Thi 100.0 1.4E-43 3E-48 346.8 21.1 170 459-671 1-173 (173)
245 PRK15056 manganese/iron transp 100.0 1.8E-43 3.9E-48 370.9 23.3 210 458-682 6-230 (272)
246 TIGR02323 CP_lyasePhnK phospho 100.0 3.4E-43 7.3E-48 365.2 24.7 218 458-683 3-239 (253)
247 cd03233 ABC_PDR_domain1 The pl 100.0 1.9E-43 4.1E-48 354.5 22.0 189 458-675 3-202 (202)
248 cd03297 ABC_ModC_molybdenum_tr 100.0 2.1E-43 4.7E-48 357.5 22.4 205 459-675 2-214 (214)
249 cd03213 ABCG_EPDR ABCG transpo 100.0 1.8E-43 3.9E-48 352.4 21.4 181 458-675 3-194 (194)
250 cd03223 ABCD_peroxisomal_ALDP 100.0 2E-43 4.3E-48 343.2 20.9 164 459-670 1-164 (166)
251 cd03232 ABC_PDR_domain2 The pl 100.0 1.8E-43 3.9E-48 351.8 20.7 180 458-675 3-192 (192)
252 cd03228 ABCC_MRP_Like The MRP 100.0 2.5E-43 5.4E-48 344.4 21.3 170 459-670 1-171 (171)
253 COG1118 CysA ABC-type sulfate/ 100.0 1.1E-43 2.4E-48 358.6 19.2 213 458-684 2-229 (345)
254 COG1131 CcmA ABC-type multidru 100.0 4.7E-43 1E-47 369.8 23.8 214 458-683 4-227 (293)
255 cd03215 ABC_Carb_Monos_II This 100.0 2.7E-43 5.8E-48 347.7 20.5 172 458-671 4-182 (182)
256 CHL00131 ycf16 sulfate ABC tra 100.0 4.8E-43 1E-47 363.8 23.3 213 458-680 7-239 (252)
257 cd03217 ABC_FeS_Assembly ABC-t 100.0 5.7E-43 1.2E-47 350.5 22.8 185 459-681 1-192 (200)
258 PRK09544 znuC high-affinity zi 100.0 9.8E-43 2.1E-47 360.6 25.3 208 458-691 4-217 (251)
259 TIGR03608 L_ocin_972_ABC putat 100.0 3.6E-43 7.8E-48 353.6 19.5 194 461-666 1-206 (206)
260 PRK03695 vitamin B12-transport 100.0 1.9E-42 4.1E-47 358.3 24.1 221 459-693 1-232 (248)
261 cd03214 ABC_Iron-Siderophores_ 100.0 6.9E-43 1.5E-47 344.1 19.5 177 460-675 1-180 (180)
262 TIGR02770 nickel_nikD nickel i 100.0 2.5E-42 5.5E-47 353.5 20.9 205 474-688 1-222 (230)
263 cd03216 ABC_Carb_Monos_I This 100.0 5.8E-42 1.3E-46 331.9 21.9 159 459-673 1-162 (163)
264 cd03231 ABC_CcmA_heme_exporter 100.0 5.5E-42 1.2E-46 343.7 22.4 195 459-666 1-198 (201)
265 TIGR01184 ntrCD nitrate transp 100.0 5.8E-42 1.3E-46 350.8 22.5 191 475-681 1-203 (230)
266 PRK13549 xylose transporter AT 100.0 6.6E-42 1.4E-46 389.6 24.0 217 458-682 5-232 (506)
267 PRK13540 cytochrome c biogenes 100.0 6.6E-42 1.4E-46 342.9 21.0 194 459-665 2-198 (200)
268 PRK15439 autoinducer 2 ABC tra 100.0 9.9E-42 2.1E-46 388.2 25.2 213 458-682 11-229 (510)
269 PRK10261 glutathione transport 100.0 1.2E-41 2.6E-46 395.3 26.1 226 458-693 313-566 (623)
270 PRK13538 cytochrome c biogenes 100.0 1.1E-41 2.5E-46 342.3 21.8 195 459-666 2-202 (204)
271 PRK09700 D-allose transporter 100.0 6.1E-42 1.3E-46 390.5 21.6 217 458-682 5-234 (510)
272 COG1123 ATPase components of v 100.0 1.1E-41 2.4E-46 374.1 22.7 225 458-692 280-530 (539)
273 COG0410 LivF ABC-type branched 100.0 3.1E-41 6.8E-46 330.5 23.3 221 458-684 3-228 (237)
274 COG4555 NatA ABC-type Na+ tran 100.0 6E-42 1.3E-46 326.2 16.5 213 459-683 2-223 (245)
275 cd03267 ABC_NatA_like Similar 100.0 2.2E-41 4.8E-46 347.8 21.6 197 471-675 33-236 (236)
276 PRK11288 araG L-arabinose tran 100.0 3.1E-41 6.8E-46 383.6 24.8 212 458-677 4-224 (501)
277 PRK10982 galactose/methyl gala 100.0 2.2E-41 4.7E-46 384.1 23.4 213 461-681 1-222 (491)
278 PLN03211 ABC transporter G-25; 100.0 1.9E-41 4.2E-46 393.4 23.1 203 471-682 80-296 (659)
279 PRK13539 cytochrome c biogenes 100.0 3.5E-41 7.6E-46 339.5 21.9 194 459-668 3-200 (207)
280 PRK10762 D-ribose transporter 100.0 3.2E-41 7E-46 383.5 24.1 217 458-682 4-230 (501)
281 COG4175 ProV ABC-type proline/ 100.0 1.2E-41 2.7E-46 343.8 18.1 207 474-691 43-265 (386)
282 COG0444 DppD ABC-type dipeptid 100.0 5.9E-41 1.3E-45 344.9 23.2 228 459-694 2-257 (316)
283 PRK15134 microcin C ABC transp 100.0 2E-41 4.4E-46 387.6 22.0 218 458-683 275-516 (529)
284 TIGR01189 ccmA heme ABC export 100.0 3.3E-41 7.1E-46 337.3 20.6 193 459-665 1-197 (198)
285 PRK10261 glutathione transport 100.0 4.6E-41 1E-45 390.4 22.9 218 458-683 12-259 (623)
286 PRK13543 cytochrome c biogenes 100.0 9E-41 1.9E-45 338.3 22.1 196 458-668 11-212 (214)
287 PRK10938 putative molybdenum t 100.0 6.3E-41 1.4E-45 380.4 23.2 212 458-683 3-225 (490)
288 TIGR02324 CP_lyasePhnL phospho 100.0 6.3E-41 1.4E-45 341.8 20.7 198 459-666 2-222 (224)
289 TIGR00955 3a01204 The Eye Pigm 100.0 2.1E-41 4.5E-46 393.0 19.3 216 458-682 17-256 (617)
290 PRK10535 macrolide transporter 100.0 1.2E-40 2.6E-45 388.3 25.2 217 458-681 4-231 (648)
291 TIGR03771 anch_rpt_ABC anchore 100.0 6.7E-41 1.4E-45 341.3 19.8 195 480-692 1-210 (223)
292 PRK15134 microcin C ABC transp 100.0 8.8E-41 1.9E-45 382.4 22.8 218 458-683 5-247 (529)
293 TIGR01166 cbiO cobalt transpor 100.0 4.9E-41 1.1E-45 333.9 17.9 178 468-656 1-189 (190)
294 COG4172 ABC-type uncharacteriz 100.0 2.6E-40 5.7E-45 342.9 23.4 219 458-687 276-522 (534)
295 COG4619 ABC-type uncharacteriz 100.0 2.9E-41 6.2E-46 312.2 14.2 202 460-672 5-213 (223)
296 PRK13541 cytochrome c biogenes 100.0 1.2E-40 2.6E-45 332.4 19.8 189 459-664 2-193 (195)
297 COG4608 AppF ABC-type oligopep 100.0 7.8E-41 1.7E-45 337.2 18.2 195 458-693 4-212 (268)
298 TIGR02633 xylG D-xylose ABC tr 100.0 2.2E-40 4.9E-45 376.8 24.3 215 459-681 2-229 (500)
299 COG1123 ATPase components of v 100.0 1.9E-40 4.1E-45 364.4 22.0 227 458-693 5-257 (539)
300 TIGR03269 met_CoM_red_A2 methy 100.0 1.4E-40 3.1E-45 380.1 21.8 219 458-682 279-517 (520)
301 PRK13546 teichoic acids export 100.0 6.2E-40 1.3E-44 341.7 24.4 198 472-693 37-243 (264)
302 PRK13545 tagH teichoic acids e 100.0 8E-40 1.7E-44 360.9 26.0 211 458-692 21-242 (549)
303 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.2E-40 4.7E-45 337.7 19.8 194 459-675 23-224 (224)
304 TIGR03269 met_CoM_red_A2 methy 100.0 2.4E-40 5.2E-45 378.2 22.3 213 459-683 1-259 (520)
305 PRK13549 xylose transporter AT 100.0 5.6E-40 1.2E-44 373.8 22.0 217 458-681 259-493 (506)
306 KOG0060 Long-chain acyl-CoA tr 100.0 1.9E-36 4E-41 327.1 46.9 344 312-668 258-641 (659)
307 COG0411 LivG ABC-type branched 100.0 7.1E-40 1.5E-44 323.3 18.1 220 459-684 5-241 (250)
308 TIGR01257 rim_protein retinal- 100.0 2.9E-39 6.2E-44 401.9 25.6 214 458-683 928-1150(2272)
309 PRK09700 D-allose transporter 100.0 1.2E-39 2.6E-44 371.6 20.4 212 458-679 265-495 (510)
310 TIGR00956 3a01205 Pleiotropic 100.0 1.5E-39 3.3E-44 404.3 22.3 210 458-678 759-989 (1394)
311 COG4181 Predicted ABC-type tra 100.0 1.8E-39 4E-44 301.2 16.8 206 458-674 6-227 (228)
312 COG1137 YhbG ABC-type (unclass 100.0 7.3E-40 1.6E-44 311.6 13.1 223 458-684 4-230 (243)
313 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.2E-39 4.8E-44 335.6 17.5 201 462-675 4-220 (255)
314 COG1129 MglA ABC-type sugar tr 100.0 1E-38 2.2E-43 348.7 23.3 209 458-676 8-228 (500)
315 COG4559 ABC-type hemin transpo 100.0 7.4E-39 1.6E-43 307.4 19.3 213 459-683 2-231 (259)
316 cd03237 ABC_RNaseL_inhibitor_d 100.0 8.2E-39 1.8E-43 330.0 20.8 194 466-682 1-207 (246)
317 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.4E-38 3E-43 365.7 24.9 210 458-683 4-249 (552)
318 TIGR01187 potA spermidine/putr 100.0 3.3E-39 7.2E-44 346.3 18.4 181 490-683 1-191 (325)
319 TIGR02633 xylG D-xylose ABC tr 100.0 6.7E-39 1.5E-43 364.7 21.8 215 458-679 257-489 (500)
320 PRK11819 putative ABC transpor 100.0 2.7E-38 5.8E-43 363.5 26.4 210 458-683 6-251 (556)
321 PRK10762 D-ribose transporter 100.0 7.9E-39 1.7E-43 364.0 21.7 211 458-681 257-483 (501)
322 PRK15177 Vi polysaccharide exp 100.0 1E-38 2.2E-43 322.8 19.5 191 474-687 2-197 (213)
323 PRK15064 ABC transporter ATP-b 100.0 2.1E-38 4.4E-43 363.0 24.4 209 459-683 2-243 (530)
324 PRK15064 ABC transporter ATP-b 100.0 2.2E-38 4.8E-43 362.7 24.2 204 458-685 319-528 (530)
325 PRK11288 araG L-arabinose tran 100.0 5.9E-39 1.3E-43 365.0 19.1 212 458-681 257-484 (501)
326 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2E-38 4.4E-43 300.6 19.2 143 459-670 1-144 (144)
327 COG4598 HisP ABC-type histidin 100.0 9.6E-39 2.1E-43 298.3 15.4 214 458-683 6-242 (256)
328 TIGR01257 rim_protein retinal- 100.0 4.5E-38 9.7E-43 391.3 25.9 217 457-685 1936-2162(2272)
329 COG3845 ABC-type uncharacteriz 100.0 6.2E-38 1.4E-42 335.4 21.4 210 458-675 4-222 (501)
330 PRK15439 autoinducer 2 ABC tra 100.0 5.3E-38 1.1E-42 357.6 21.1 213 458-683 268-493 (510)
331 COG4161 ArtP ABC-type arginine 100.0 6.8E-38 1.5E-42 287.7 16.5 213 458-682 2-230 (242)
332 COG4148 ModC ABC-type molybdat 100.0 6.2E-38 1.3E-42 312.0 16.5 197 477-684 16-220 (352)
333 PRK10938 putative molybdenum t 100.0 1.2E-37 2.5E-42 353.7 19.0 206 458-675 260-485 (490)
334 PRK10982 galactose/methyl gala 100.0 3.9E-37 8.4E-42 349.4 23.1 211 458-678 250-476 (491)
335 COG4525 TauB ABC-type taurine 100.0 2.8E-37 6E-42 292.5 17.0 204 458-677 3-219 (259)
336 cd00267 ABC_ATPase ABC (ATP-bi 100.0 8.3E-37 1.8E-41 294.1 19.8 155 460-670 1-157 (157)
337 PLN03073 ABC transporter F fam 100.0 1.4E-36 3.1E-41 354.5 23.9 199 458-680 508-712 (718)
338 cd03222 ABC_RNaseL_inhibitor T 100.0 1.3E-36 2.8E-41 296.8 18.5 151 462-678 4-159 (177)
339 PLN03140 ABC transporter G fam 100.0 2.4E-36 5.2E-41 374.5 25.2 212 457-678 866-1106(1470)
340 PRK11819 putative ABC transpor 100.0 3.5E-36 7.7E-41 345.9 24.1 202 458-683 324-534 (556)
341 PRK10636 putative ABC transpor 100.0 1.3E-35 2.8E-40 345.2 27.1 200 458-681 312-516 (638)
342 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 7.3E-36 1.6E-40 343.2 23.5 200 458-682 322-531 (552)
343 PRK11147 ABC transporter ATPas 100.0 8.6E-36 1.9E-40 347.4 24.0 201 458-682 319-528 (635)
344 cd03238 ABC_UvrA The excision 100.0 8.2E-36 1.8E-40 290.9 18.9 161 471-675 7-176 (176)
345 PRK13409 putative ATPase RIL; 100.0 1.5E-35 3.2E-40 340.2 21.9 192 458-676 340-536 (590)
346 COG4604 CeuD ABC-type enteroch 100.0 3.3E-36 7.1E-41 285.8 13.0 221 459-692 2-234 (252)
347 TIGR00956 3a01205 Pleiotropic 100.0 1.8E-35 3.8E-40 368.1 20.7 207 472-681 74-299 (1394)
348 PRK10636 putative ABC transpor 100.0 1.3E-34 2.9E-39 336.8 25.3 209 459-683 2-237 (638)
349 COG4172 ABC-type uncharacteriz 100.0 4.8E-35 1E-39 303.8 18.9 225 458-690 6-256 (534)
350 COG1101 PhnK ABC-type uncharac 100.0 8.4E-35 1.8E-39 280.1 16.1 204 470-675 17-231 (263)
351 PLN03140 ABC transporter G fam 100.0 1.2E-34 2.6E-39 359.5 19.6 208 472-682 178-427 (1470)
352 COG4167 SapF ABC-type antimicr 100.0 2E-34 4.4E-39 270.0 16.0 214 473-697 27-256 (267)
353 PRK11147 ABC transporter ATPas 100.0 1.1E-33 2.5E-38 329.6 26.2 208 458-683 3-244 (635)
354 PRK13409 putative ATPase RIL; 100.0 1.4E-34 3E-39 332.2 15.4 193 462-669 77-287 (590)
355 COG1119 ModF ABC-type molybden 100.0 1.2E-33 2.6E-38 279.1 19.8 210 458-676 31-256 (257)
356 PLN03073 ABC transporter F fam 100.0 4.3E-33 9.4E-38 325.4 20.5 221 458-683 177-432 (718)
357 COG0396 sufC Cysteine desulfur 100.0 2E-32 4.3E-37 267.2 21.1 224 458-691 3-244 (251)
358 PF00005 ABC_tran: ABC transpo 100.0 7.3E-34 1.6E-38 266.9 10.5 136 475-624 1-137 (137)
359 KOG0061 Transporter, ABC super 100.0 6.8E-33 1.5E-37 318.8 19.4 218 457-682 24-260 (613)
360 COG4152 ABC-type uncharacteriz 100.0 6.5E-33 1.4E-37 271.6 14.4 215 458-685 2-222 (300)
361 COG1134 TagH ABC-type polysacc 100.0 4.9E-32 1.1E-36 268.2 20.5 188 472-683 40-237 (249)
362 KOG0064 Peroxisomal long-chain 100.0 2E-28 4.4E-33 261.2 49.4 332 316-667 300-682 (728)
363 COG0488 Uup ATPase components 100.0 6.2E-32 1.4E-36 302.9 23.0 210 458-684 3-242 (530)
364 COG4136 ABC-type uncharacteriz 100.0 7.4E-32 1.6E-36 245.3 14.3 196 458-677 2-210 (213)
365 cd03270 ABC_UvrA_I The excisio 100.0 1.2E-31 2.7E-36 273.4 17.3 193 470-675 6-226 (226)
366 COG4674 Uncharacterized ABC-ty 100.0 5.7E-31 1.2E-35 249.8 15.3 214 458-683 5-236 (249)
367 COG0488 Uup ATPase components 100.0 5.4E-30 1.2E-34 287.3 25.7 204 457-684 320-527 (530)
368 cd03271 ABC_UvrA_II The excisi 100.0 2.3E-31 4.9E-36 274.8 13.1 194 473-677 9-261 (261)
369 cd03278 ABC_SMC_barmotin Barmo 100.0 2.9E-30 6.3E-35 257.5 13.6 164 476-668 14-190 (197)
370 COG4586 ABC-type uncharacteriz 100.0 3.1E-30 6.8E-35 256.7 11.9 211 473-691 38-255 (325)
371 COG4107 PhnK ABC-type phosphon 100.0 2.9E-29 6.2E-34 233.7 15.8 226 458-692 6-252 (258)
372 COG4133 CcmA ABC-type transpor 100.0 8.4E-30 1.8E-34 241.5 11.6 188 460-660 4-196 (209)
373 cd03279 ABC_sbcCD SbcCD and ot 100.0 7.4E-30 1.6E-34 258.2 11.4 192 458-671 5-211 (213)
374 cd03272 ABC_SMC3_euk Eukaryoti 100.0 1.9E-29 4.1E-34 260.5 13.1 191 458-667 3-234 (243)
375 COG4778 PhnL ABC-type phosphon 99.9 5.7E-28 1.2E-32 224.4 11.8 201 458-667 4-226 (235)
376 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.8E-27 3.8E-32 247.0 12.1 185 485-670 25-247 (251)
377 KOG0059 Lipid exporter ABCA1 a 99.9 9.5E-27 2.1E-31 279.1 17.4 220 457-687 563-792 (885)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.9 4.5E-28 9.8E-33 244.4 4.7 184 458-668 5-204 (212)
379 cd03240 ABC_Rad50 The catalyti 99.9 6.1E-27 1.3E-31 235.0 12.7 163 478-668 16-197 (204)
380 PRK00635 excinuclease ABC subu 99.9 3.3E-26 7.1E-31 281.6 21.1 213 458-684 600-908 (1809)
381 PRK00349 uvrA excinuclease ABC 99.9 3E-26 6.5E-31 271.8 18.1 104 584-687 818-932 (943)
382 COG1129 MglA ABC-type sugar tr 99.9 2.7E-25 5.9E-30 243.5 19.7 215 458-678 263-486 (500)
383 KOG0927 Predicted transporter 99.9 2.1E-26 4.5E-31 247.9 10.7 194 457-673 388-586 (614)
384 COG4138 BtuD ABC-type cobalami 99.9 1.8E-26 3.9E-31 215.3 6.7 208 459-683 4-222 (248)
385 KOG0065 Pleiotropic drug resis 99.9 6.3E-26 1.4E-30 266.1 12.1 197 472-678 804-1017(1391)
386 TIGR00630 uvra excinuclease AB 99.9 1.4E-24 3E-29 257.2 20.4 97 584-680 816-923 (924)
387 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.7E-25 3.7E-30 231.5 8.9 183 486-668 23-233 (247)
388 COG3845 ABC-type uncharacteriz 99.9 1.8E-23 3.9E-28 224.6 22.2 214 457-679 256-489 (501)
389 PF00664 ABC_membrane: ABC tra 99.9 4.1E-21 8.9E-26 197.8 38.9 273 128-413 2-275 (275)
390 cd01128 rho_factor Transcripti 99.9 1.1E-23 2.3E-28 216.3 9.3 197 480-694 11-229 (249)
391 KOG0062 ATPase component of AB 99.9 1.9E-22 4.1E-27 216.4 17.8 207 457-694 361-574 (582)
392 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.1E-22 2.4E-27 203.1 13.0 169 476-670 13-192 (198)
393 KOG0066 eIF2-interacting prote 99.9 6.3E-22 1.4E-26 207.0 14.8 193 457-673 585-781 (807)
394 KOG0927 Predicted transporter 99.9 1.8E-21 3.9E-26 210.0 17.4 220 457-684 74-311 (614)
395 cd03239 ABC_SMC_head The struc 99.9 1.3E-21 2.8E-26 191.9 13.5 85 578-668 83-172 (178)
396 COG1245 Predicted ATPase, RNas 99.9 2.1E-21 4.6E-26 205.2 15.5 181 463-668 340-531 (591)
397 KOG0062 ATPase component of AB 99.9 8.9E-22 1.9E-26 211.2 9.6 203 456-684 78-287 (582)
398 COG4170 SapD ABC-type antimicr 99.8 7.1E-21 1.5E-25 182.6 11.1 207 472-688 20-255 (330)
399 cd03241 ABC_RecN RecN ATPase i 99.8 2.9E-20 6.2E-25 195.5 14.9 76 595-670 170-249 (276)
400 cd03277 ABC_SMC5_euk Eukaryoti 99.8 3.1E-20 6.6E-25 187.5 11.9 180 476-670 15-211 (213)
401 cd03280 ABC_MutS2 MutS2 homolo 99.8 2.6E-20 5.7E-25 186.6 11.0 145 475-675 17-172 (200)
402 KOG0065 Pleiotropic drug resis 99.8 4.8E-20 1E-24 217.1 13.7 205 473-682 129-351 (1391)
403 COG0178 UvrA Excinuclease ATPa 99.8 3.4E-19 7.4E-24 200.3 18.0 117 573-689 788-926 (935)
404 KOG2355 Predicted ABC-type tra 99.8 5.2E-19 1.1E-23 169.6 15.1 208 457-679 12-234 (291)
405 PRK00635 excinuclease ABC subu 99.8 1E-18 2.2E-23 216.1 19.7 211 473-684 1504-1798(1809)
406 cd03227 ABC_Class2 ABC-type Cl 99.8 1.7E-18 3.7E-23 167.5 13.1 134 480-668 16-155 (162)
407 COG2401 ABC-type ATPase fused 99.8 2.4E-18 5.3E-23 180.0 13.6 178 473-672 397-588 (593)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.7 3.3E-18 7.1E-23 173.8 10.3 153 471-676 16-175 (222)
409 cd03242 ABC_RecF RecF is a rec 99.7 4.4E-17 9.6E-22 170.8 16.4 191 476-671 13-269 (270)
410 cd00820 PEPCK_HprK Phosphoenol 99.7 3.3E-18 7.1E-23 151.5 6.2 76 472-555 2-77 (107)
411 TIGR00630 uvra excinuclease AB 99.7 3.6E-17 7.7E-22 194.5 13.5 100 584-683 475-584 (924)
412 PRK00349 uvrA excinuclease ABC 99.7 4.5E-17 9.7E-22 194.0 13.8 100 584-683 477-586 (943)
413 COG1245 Predicted ATPase, RNas 99.7 3.6E-17 7.9E-22 173.4 11.5 190 463-667 79-287 (591)
414 TIGR00606 rad50 rad50. This fa 99.7 3.9E-17 8.4E-22 204.6 13.7 119 544-667 1153-1289(1311)
415 cd03243 ABC_MutS_homologs The 99.7 9.4E-17 2E-21 161.1 9.6 154 478-681 22-178 (202)
416 cd03283 ABC_MutS-like MutS-lik 99.7 6E-17 1.3E-21 161.9 7.7 145 471-666 13-163 (199)
417 TIGR02858 spore_III_AA stage I 99.7 4.5E-16 9.7E-21 161.8 12.1 142 486-681 112-268 (270)
418 cd03284 ABC_MutS1 MutS1 homolo 99.6 5.5E-15 1.2E-19 149.6 8.7 155 471-680 17-179 (216)
419 KOG0063 RNAse L inhibitor, ABC 99.6 2.1E-14 4.7E-19 151.2 12.5 201 466-688 343-554 (592)
420 cd03282 ABC_MSH4_euk MutS4 hom 99.5 2.4E-14 5.1E-19 143.5 10.5 141 471-661 15-158 (204)
421 PHA02562 46 endonuclease subun 99.5 8.7E-15 1.9E-19 169.5 8.0 106 564-671 432-555 (562)
422 PRK00064 recF recombination pr 99.5 1.4E-13 3.1E-18 149.9 16.9 76 594-671 272-359 (361)
423 PF02463 SMC_N: RecF/RecN/SMC 99.5 3.3E-14 7.1E-19 144.5 9.8 72 595-666 136-211 (220)
424 KOG0066 eIF2-interacting prote 99.5 4.7E-14 1E-18 148.5 8.5 196 458-678 264-495 (807)
425 PRK07721 fliI flagellum-specif 99.5 1.8E-12 4E-17 143.2 17.8 177 471-678 145-339 (438)
426 PTZ00132 GTP-binding nuclear p 99.4 6.6E-13 1.4E-17 134.5 6.9 144 487-642 11-204 (215)
427 TIGR00634 recN DNA repair prot 99.4 1.8E-12 3.9E-17 149.5 10.5 77 594-670 439-519 (563)
428 cd03281 ABC_MSH5_euk MutS5 hom 99.3 7.9E-12 1.7E-16 126.4 11.5 136 473-661 17-161 (213)
429 PRK10869 recombination and rep 99.3 5.2E-12 1.1E-16 144.6 11.2 77 594-670 429-509 (553)
430 TIGR01069 mutS2 MutS2 family p 99.3 5.9E-12 1.3E-16 148.8 11.5 144 458-657 295-448 (771)
431 PRK13695 putative NTPase; Prov 99.3 5.3E-12 1.2E-16 123.6 6.7 81 591-674 74-156 (174)
432 TIGR02788 VirB11 P-type DNA tr 99.3 1E-11 2.3E-16 132.6 9.1 144 478-682 137-281 (308)
433 smart00534 MUTSac ATPase domai 99.3 5E-12 1.1E-16 125.1 5.3 77 591-670 57-138 (185)
434 TIGR00767 rho transcription te 99.2 3.5E-11 7.6E-16 129.6 11.2 83 425-512 102-195 (415)
435 PRK08533 flagellar accessory p 99.2 2.2E-10 4.7E-15 117.3 14.4 158 458-667 7-184 (230)
436 cd03287 ABC_MSH3_euk MutS3 hom 99.2 5E-11 1.1E-15 120.8 9.4 139 471-660 17-160 (222)
437 TIGR00611 recf recF protein. A 99.2 2.8E-10 6E-15 124.1 15.4 63 594-658 274-345 (365)
438 COG0178 UvrA Excinuclease ATPa 99.2 8.8E-11 1.9E-15 133.3 11.7 108 576-684 463-579 (935)
439 PRK14079 recF recombination pr 99.1 2.7E-10 5.9E-15 123.7 13.1 75 594-673 262-345 (349)
440 PRK10733 hflB ATP-dependent me 99.1 7.7E-12 1.7E-16 146.0 0.1 163 316-510 40-210 (644)
441 PRK00409 recombination and DNA 99.1 3.5E-10 7.5E-15 134.2 13.6 150 473-672 316-468 (782)
442 TIGR03238 dnd_assoc_3 dnd syst 99.1 4.8E-11 1.1E-15 130.5 4.5 67 473-542 20-87 (504)
443 PRK01156 chromosome segregatio 99.1 2.2E-10 4.7E-15 139.9 10.3 76 592-667 798-883 (895)
444 PRK06793 fliI flagellum-specif 99.1 5.8E-10 1.3E-14 122.5 12.3 167 458-675 130-304 (432)
445 KOG0063 RNAse L inhibitor, ABC 99.1 2.5E-10 5.3E-15 121.0 8.9 171 483-667 98-287 (592)
446 cd01124 KaiC KaiC is a circadi 99.1 8.5E-10 1.8E-14 108.9 12.3 84 584-667 60-163 (187)
447 cd01131 PilT Pilus retraction 99.1 2.9E-10 6.4E-15 113.7 8.3 119 487-667 3-122 (198)
448 PRK03918 chromosome segregatio 99.1 3.4E-10 7.3E-15 138.2 9.6 75 594-668 787-868 (880)
449 PRK13830 conjugal transfer pro 99.1 2.4E-09 5.3E-14 128.3 16.7 67 610-676 649-727 (818)
450 TIGR02168 SMC_prok_B chromosom 99.0 3.2E-10 7E-15 142.4 8.7 75 592-666 1086-1164(1179)
451 PRK00300 gmk guanylate kinase; 99.0 3.7E-10 7.9E-15 113.5 6.5 78 483-569 3-92 (205)
452 cd01120 RecA-like_NTPases RecA 99.0 1.3E-09 2.9E-14 104.2 9.4 129 487-657 1-140 (165)
453 smart00382 AAA ATPases associa 99.0 1.7E-08 3.7E-13 93.1 16.5 117 484-653 1-125 (148)
454 TIGR00618 sbcc exonuclease Sbc 99.0 1.1E-09 2.3E-14 135.5 10.5 76 594-669 949-1036(1042)
455 TIGR02169 SMC_prok_A chromosom 99.0 1.2E-09 2.6E-14 137.3 9.4 86 583-668 1056-1151(1164)
456 PRK06002 fliI flagellum-specif 98.8 6.8E-09 1.5E-13 114.3 8.6 85 457-542 138-229 (450)
457 PRK06067 flagellar accessory p 98.8 3.1E-08 6.6E-13 101.8 12.9 148 481-668 21-187 (234)
458 cd03286 ABC_MSH6_euk MutS6 hom 98.8 1.6E-08 3.5E-13 102.3 10.0 132 471-660 16-159 (218)
459 PRK02224 chromosome segregatio 98.8 8.6E-09 1.9E-13 125.9 9.3 76 594-669 780-869 (880)
460 PF13304 AAA_21: AAA domain; P 98.8 9.1E-09 2E-13 105.2 7.8 63 595-657 236-302 (303)
461 PRK11098 microcin B17 transpor 98.8 0.00015 3.2E-09 79.7 39.7 225 198-439 157-395 (409)
462 PRK10246 exonuclease subunit S 98.7 2E-08 4.3E-13 123.7 9.3 75 593-667 947-1031(1047)
463 PRK12369 putative transporter; 98.7 0.00018 3.9E-09 77.3 38.2 57 383-439 265-321 (326)
464 PRK13891 conjugal transfer pro 98.7 3.2E-07 7E-12 110.7 17.0 54 606-659 680-735 (852)
465 PF06472 ABC_membrane_2: ABC t 98.7 0.00022 4.9E-09 75.3 36.3 222 128-366 30-256 (281)
466 cd01130 VirB11-like_ATPase Typ 98.7 4.5E-08 9.7E-13 97.0 7.3 79 474-555 14-95 (186)
467 PRK01889 GTPase RsgA; Reviewed 98.6 1.8E-08 3.9E-13 109.7 4.4 82 474-558 184-265 (356)
468 PRK07196 fliI flagellum-specif 98.6 3E-08 6.5E-13 109.2 5.5 82 472-554 143-234 (434)
469 PRK06995 flhF flagellar biosyn 98.6 1E-07 2.2E-12 106.5 7.3 140 478-654 249-402 (484)
470 PF09818 ABC_ATPase: Predicted 98.6 1.1E-06 2.3E-11 95.5 14.8 172 464-672 227-417 (448)
471 TIGR02524 dot_icm_DotB Dot/Icm 98.5 1.2E-07 2.6E-12 103.0 7.0 87 483-571 132-233 (358)
472 TIGR01420 pilT_fam pilus retra 98.5 3.7E-07 7.9E-12 99.2 9.7 121 482-664 119-240 (343)
473 cd01125 repA Hexameric Replica 98.5 3.5E-07 7.5E-12 94.3 7.9 45 609-654 107-159 (239)
474 PRK08149 ATP synthase SpaL; Va 98.4 1.8E-07 3.9E-12 102.9 5.5 69 472-541 139-214 (428)
475 TIGR02655 circ_KaiC circadian 98.4 5.6E-08 1.2E-12 110.4 0.6 156 481-667 17-190 (484)
476 TIGR01026 fliI_yscN ATPase Fli 98.4 1.9E-06 4.1E-11 95.8 12.5 183 471-678 150-344 (440)
477 COG3910 Predicted ATPase [Gene 98.4 3.2E-06 6.9E-11 81.4 11.5 84 595-680 129-214 (233)
478 PRK09825 idnK D-gluconate kina 98.4 3.7E-07 8.1E-12 89.5 5.0 66 484-555 2-69 (176)
479 PRK10078 ribose 1,5-bisphospho 98.4 4.5E-07 9.7E-12 89.8 5.5 55 485-542 2-56 (186)
480 TIGR03881 KaiC_arch_4 KaiC dom 98.4 2.7E-07 5.8E-12 94.4 4.0 40 481-520 16-56 (229)
481 PLN03210 Resistant to P. syrin 98.3 1.8E-06 3.8E-11 108.3 10.5 143 478-667 200-349 (1153)
482 TIGR03263 guanyl_kin guanylate 98.3 3.2E-07 6.9E-12 90.1 3.0 77 485-570 1-89 (180)
483 TIGR00101 ureG urease accessor 98.3 1.4E-06 2.9E-11 87.3 7.3 104 487-600 3-108 (199)
484 cd00071 GMPK Guanosine monopho 98.3 1.7E-07 3.7E-12 88.1 0.7 72 488-568 2-86 (137)
485 cd02023 UMPK Uridine monophosp 98.3 6.4E-07 1.4E-11 89.5 4.6 107 487-628 1-113 (198)
486 PRK13898 type IV secretion sys 98.3 2.2E-05 4.8E-10 94.8 18.6 61 608-668 637-709 (800)
487 PRK06315 type III secretion sy 98.3 8.3E-07 1.8E-11 98.2 5.8 101 473-574 153-276 (442)
488 cd00009 AAA The AAA+ (ATPases 98.3 5.7E-06 1.2E-10 76.8 10.1 54 601-655 72-131 (151)
489 PLN02796 D-glycerate 3-kinase 98.2 4E-07 8.6E-12 97.1 2.3 62 472-533 79-151 (347)
490 TIGR02322 phosphon_PhnN phosph 98.2 1.9E-06 4.2E-11 84.5 6.6 62 485-547 1-78 (179)
491 PF13748 ABC_membrane_3: ABC t 98.2 0.0051 1.1E-07 62.0 30.6 36 122-157 7-42 (237)
492 PRK15494 era GTPase Era; Provi 98.2 7.7E-07 1.7E-11 96.5 3.8 54 456-509 16-76 (339)
493 TIGR02680 conserved hypothetic 98.2 2.3E-06 5E-11 107.9 7.8 61 592-654 1244-1316(1353)
494 cd01123 Rad51_DMC1_radA Rad51_ 98.2 5E-06 1.1E-10 85.2 9.0 79 481-566 15-100 (235)
495 TIGR00235 udk uridine kinase. 98.2 1.2E-06 2.7E-11 88.2 3.8 44 483-547 4-47 (207)
496 PRK03846 adenylylsulfate kinas 98.1 1.8E-06 3.8E-11 86.5 4.0 56 483-542 22-78 (198)
497 TIGR03497 FliI_clade2 flagella 98.1 2.9E-06 6.4E-11 93.6 5.7 58 468-526 121-178 (413)
498 PRK05480 uridine/cytidine kina 98.1 4.7E-06 1E-10 84.0 6.5 66 483-569 4-75 (209)
499 PRK09183 transposase/IS protei 98.1 1E-05 2.2E-10 84.4 9.0 50 460-510 73-127 (259)
500 COG0419 SbcC ATPase involved i 98.1 7.6E-06 1.7E-10 100.1 9.3 76 594-669 814-898 (908)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-123 Score=1025.16 Aligned_cols=572 Identities=30% Similarity=0.436 Sum_probs=511.2
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 005205 106 KIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGY 185 (709)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (709)
..+++++.|.+ +.++++..++++++++++..+.+|.+.+.++|.+... .+. . ..+... ...+
T Consensus 133 ~~~~rl~~l~~-----~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~-~~~--~---~~~~~~-------~~~l 194 (716)
T KOG0058|consen 133 TLLKRLLGLLK-----PEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEG-DDS--A---DALKRA-------CTIL 194 (716)
T ss_pred hHHHHHHHHhc-----hhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhc-cch--H---HHHHHH-------HHHH
Confidence 36778888887 4567778888888888899999999999999988641 111 0 011100 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005205 186 GIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (709)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (709)
.++.+..++++.+|.+++...++++..++|.++|+++++++++|||.+++||+.+|++.|+..+..-+...+...+.+++
T Consensus 195 ~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~ 274 (716)
T KOG0058|consen 195 LGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLV 274 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 12223456788999999999999999999999999999999999999999999999999999888777776666777766
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHH
Q 005205 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY 345 (709)
Q Consensus 266 ~~~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~ 345 (709)
..+..+ .++++.+|.++++.++.+|+++++...+.++.++..++.+++.++.++...|.+++|+|||+|+.|+.|.+||
T Consensus 275 ~~~g~~-~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry 353 (716)
T KOG0058|consen 275 QGFGGL-GFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRY 353 (716)
T ss_pred HHHHhH-HHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHH
Confidence 554333 4456679999999999999988888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (709)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~ 425 (709)
.+..++..+...|.....+.+....++........++++|++++..|+||.|++++|+.|..++..++..++.+++++++
T Consensus 354 ~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmk 433 (716)
T KOG0058|consen 354 NKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMK 433 (716)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888777766666666667777788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEec--CCcccceeeeeEeeCCcEEEEEcCCCccHHHHHH
Q 005205 426 SLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYL--TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (709)
Q Consensus 426 ~~~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~--~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~ 503 (709)
+.++.+|++|++|++|..+......|. ...|.|+|+||+|+|| |+.+||+|+||+|+|||+||+||||||||||+++
T Consensus 434 gvGAs~rvFel~dr~P~i~~~G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTias 512 (716)
T KOG0058|consen 434 GVGASERVFELMDRKPRIPLTGTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIAS 512 (716)
T ss_pred hcchHHHHHHHhccCCCCCCCCccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHH
Confidence 999999999999999987655222333 3468999999999999 4568999999999999999999999999999999
Q ss_pred HHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCC
Q 005205 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPA 583 (709)
Q Consensus 504 LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~ 583 (709)
||.|||+|++|+|++||+||+++++.+||++||+|.|||.||++||+|||+||.+++++|||++|||.|++||||+++|+
T Consensus 513 LL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~ 592 (716)
T KOG0058|consen 513 LLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPD 592 (716)
T ss_pred HHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeE
Q 005205 584 KYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEI 663 (709)
Q Consensus 584 G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~I 663 (709)
||||.|||+|..|||||||||||||||+|||.||||||||||||+++|..|+++|.+++++||||+||||||||++||+|
T Consensus 593 gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~I 672 (716)
T KOG0058|consen 593 GYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQI 672 (716)
T ss_pred ccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCEEEEecChHHHhhcc-cHHHHHHHhhhcc
Q 005205 664 IVLENGKVIEQGSHDDLLTKA-GRYAQLWGQQNNT 697 (709)
Q Consensus 664 ivl~~G~Ive~Gth~eLl~~~-g~Y~~l~~~q~~~ 697 (709)
+|+|+|+|+|.|+|+|||++. |.|++|+++|...
T Consensus 673 vvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 673 VVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred EEEcCCeEEecccHHHHhhCcccHHHHHHHHhccc
Confidence 999999999999999999986 8999999999654
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.8e-113 Score=984.85 Aligned_cols=607 Identities=31% Similarity=0.442 Sum_probs=521.1
Q ss_pred CccCceeeccCCCCcccee----cccccCC-----CcccccccccccCCCChhhhhhhHHHHHHHHHHHhcccchhHHHH
Q 005205 56 RFSPITSFLSDSASSRSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFRLR 126 (709)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 126 (709)
+.+++++++.||+.|++.+ |.+.|+| +|.++. +.. + + ....+..+++.++ +++..
T Consensus 92 ~~~~~~~~v~dp~~g~~~l~~~e~~~~~tg~~l~l~~~~~~--~~~----~-~----~~~~~~~f~~~~~-----~~~~~ 155 (709)
T COG2274 92 KIDKNKVVVLDPAKGIRRLSLEEFEKLWTGIALLLAPTASR--KFK----D-I----PPFGLSWFIPLLF-----KYRRL 155 (709)
T ss_pred EecCCeEEEEeCCCCcEEcCHHHHHHhhheeEEEEeccccc--ccc----c-c----cccchHhHHHHHH-----hhHHH
Confidence 4677789999999999998 8888887 555442 000 0 1 1112334555554 44555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 127 VITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKV 206 (709)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (709)
+.-.++..++..+++++.|++.+.++|.+...... .++..+ . +++.+..+...++..+|++++.+.
T Consensus 156 l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~-------~tL~vl----~---ig~~~~~l~~~~l~~lr~~~~~~~ 221 (709)
T COG2274 156 LFEVLLASLLLQLLALATPLFSQIVIDKVLPDASR-------STLTVL----A---IGLLLAALFEALLRLLRTYLIAHL 221 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch-------hHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777889999999999999998753211 111111 1 111122234557888999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005205 207 ALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWIT 286 (709)
Q Consensus 207 ~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~i~ 286 (709)
+.|+..++..++|+|++++|+.||+++++||+.+|+++ .+.+..+++......+..++.. ++.+.++++++|.++|++
T Consensus 222 ~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~e-l~~Ir~flt~~~l~~iiD~~~~-~i~l~vm~~ys~~L~li~ 299 (709)
T COG2274 222 GKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVRE-LEQIREFLTGSILTLIIDLLFA-LIFLAVMFLYSWKLTLIV 299 (709)
T ss_pred HHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999975 5566666655444433333222 233445667899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 287 SLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFL 366 (709)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (709)
++.+++++++..+..+..++..++..+..++.++.+.|.+.|+++||+.+.|+++..+|++...++.+...+..+.....
T Consensus 300 l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 379 (709)
T COG2274 300 LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALIL 379 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999998888888777776666666777788899999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 005205 367 NFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDR 446 (709)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~~~~~~ 446 (709)
+....++..+..++++|+|+++|++|++|+|++++|.++..++..|+..+.+++.++++...+.+|+.++++.++|.+.+
T Consensus 380 ~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~ 459 (709)
T COG2274 380 NTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 87777777788888999999999999999999999999999999999999999999999999999999999998875443
Q ss_pred CCCCCCCCCCceEEEEeEEEEecCC-cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC
Q 005205 447 DNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (709)
Q Consensus 447 ~~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~ 525 (709)
......+...|+|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+|||+|+|+|++|+|++||+|+.+
T Consensus 460 ~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~ 539 (709)
T COG2274 460 KTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLND 539 (709)
T ss_pred cccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHh
Confidence 3222233346899999999999865 569999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 005205 526 VTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (709)
Q Consensus 526 ~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRia 605 (709)
++++++|++|+||+||++||+|||+|||++|+|++++||+++||+.|++||||++||.||||+|||+|.+|||||||||+
T Consensus 540 i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrla 619 (709)
T COG2274 540 IDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLA 619 (709)
T ss_pred cCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhccc
Q 005205 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAG 685 (709)
Q Consensus 606 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g 685 (709)
|||||++||+||||||||||||++||+.|.++|.+..++||+|+||||++|+++||||+|||+|||+|+|||+||++.+|
T Consensus 620 lARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g 699 (709)
T COG2274 620 LARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGG 699 (709)
T ss_pred HHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 005205 686 RYAQLWGQQ 694 (709)
Q Consensus 686 ~Y~~l~~~q 694 (709)
.|+++|..|
T Consensus 700 ~y~~l~~~q 708 (709)
T COG2274 700 LYARLYQQQ 708 (709)
T ss_pred hHHHHHhcc
Confidence 999999887
No 3
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-111 Score=899.99 Aligned_cols=580 Identities=63% Similarity=0.955 Sum_probs=537.7
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 005205 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (709)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (709)
+...+.+..|.|.+.+|..+.+++.++++++.+-++.+.+|++++..+|.+....+. + +.+......+++
T Consensus 10 ~~~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~-------~---a~~~~~~~~~~~ 79 (591)
T KOG0057|consen 10 LKILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGN-------P---AVLSTITALLAG 79 (591)
T ss_pred hHHHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccC-------c---chhhhhhHHHHH
Confidence 677889999999999998888888888888888999999999999999987422111 1 111122345677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005205 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (709)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (709)
|+++++...+++.++...+.++.+++.++...+.|+|++.++.++|.+..+|++.+++++.++.+..++...+.+++|.+
T Consensus 80 y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~ 159 (591)
T KOG0057|consen 80 YGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTL 159 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHH
Q 005205 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (709)
Q Consensus 265 ~~~~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~ 344 (709)
+.+.++.+.+.+.+++..+++.+..+..|..+.+.+..++.+++++++++.++.+..+.|++.|.++||+||.|+++.++
T Consensus 160 ~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~ 239 (591)
T KOG0057|consen 160 FEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASR 239 (591)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHH
Confidence 88888888888888999999999998999999998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (709)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~ 424 (709)
|++...++.+...+.....++.+.++..+++...+.+++.|...+.+|.||+|+++...++.+++..|+..++..+.++.
T Consensus 240 y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~ 319 (591)
T KOG0057|consen 240 YDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELR 319 (591)
T ss_pred HHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888999889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHH
Q 005205 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRL 504 (709)
Q Consensus 425 ~~~~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~L 504 (709)
+++.+++.++...+...++.+. +.+....++.|+|+||+|+|++++++|+++||+|++||+|||||+|||||||++++
T Consensus 320 q~l~Dm~~~~~l~~~~~~i~~~--~~~i~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~ 397 (591)
T KOG0057|consen 320 QALTDMRTLFILLEVDEDIQEA--ALPIELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRL 397 (591)
T ss_pred HHHHhHHHHHhhhhhhhhhhhc--cCCcccCCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHH
Confidence 9999999998876655443332 22333345789999999999988889999999999999999999999999999999
Q ss_pred HhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCC
Q 005205 505 LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK 584 (709)
Q Consensus 505 L~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G 584 (709)
|+|||+ ++|+|+|||+||++++++++|+.|||||||..|||+||.+||.||+|.+++||+.++||.|++||.|++||+|
T Consensus 398 LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~G 476 (591)
T KOG0057|consen 398 LLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDG 476 (591)
T ss_pred HHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhcccc
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEE
Q 005205 585 YSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEII 664 (709)
Q Consensus 585 ~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Ii 664 (709)
|+|.|||+|..|||||||||+||||++|||||++||||||+||++||+.|.+++.....+||+|+|+||++|+++||+|+
T Consensus 477 Y~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~ 556 (591)
T KOG0057|consen 477 YQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKII 556 (591)
T ss_pred chhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEecChHHHhhcccHHHHHHHhhhcc
Q 005205 665 VLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNT 697 (709)
Q Consensus 665 vl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 697 (709)
|||||+++|.|||+||+++.+.|+++|..|...
T Consensus 557 ~l~nG~v~e~gth~ell~~s~~~~~~w~~~~~~ 589 (591)
T KOG0057|consen 557 VLDNGTVKEYGTHSELLAPSELYADLWTTQTSS 589 (591)
T ss_pred EEECCeeEEeccHHHHhhhhhHHHHHhcccccc
Confidence 999999999999999999999999999988543
No 4
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-113 Score=896.71 Aligned_cols=578 Identities=47% Similarity=0.753 Sum_probs=516.8
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 005205 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (709)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (709)
.+....|+|+..++..+...+.+++++.+.-++.+..|.+.++++|.+....... +. +.+..+.+-...+.
T Consensus 198 ~~~~~~ylwp~~~~alql~v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~~~-------~~--~~~~~v~L~flqg~ 268 (790)
T KOG0056|consen 198 LRTVAPYLWPTKSIALQLRVVFCLFLLIIGRLINVSLPILSKWIVDELTAPDTFQ-------YS--LVFLYVFLKFLQGG 268 (790)
T ss_pred eEEeccccccCCCcchhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcchhh-------HH--HHHHHHHHHHHhcC
Confidence 3455678887666666666777777777788889999999999999886321111 00 11111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005205 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (709)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (709)
. ....+++.+|++++..+.+-..+.+..++|+|++++++.||-++++|+..+.+++.++.+. +....++++.|.++.+
T Consensus 269 g-tgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl 346 (790)
T KOG0056|consen 269 G-TGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDL 346 (790)
T ss_pred C-ccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHh
Confidence 1 1235678899999999999999999999999999999999999999999999999888777 7778888999999888
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHH
Q 005205 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (709)
Q Consensus 268 ~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~ 347 (709)
.+.++.+.+.+++++++++++.+.+|..+.+.+..++.+.++++..+.++..+...+++-|.+|||-|+.|+++.++|.+
T Consensus 347 ~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYre 426 (790)
T KOG0056|consen 347 GVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYRE 426 (790)
T ss_pred hhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHH
Confidence 76666666667888999999999999988888889999999998888777778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSL 427 (709)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~ 427 (709)
...+|.+...|......+++..++.++.+.+++..++.+|.|..+.+|+|+++.|.+|+.++..|++.++..+..+|+..
T Consensus 427 Ail~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nf 506 (790)
T KOG0056|consen 427 AILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNF 506 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhh
Confidence 99999999888887778888888888877777777788888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhc
Q 005205 428 VDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 428 ~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
.++|+++++++++++..+.++..|.....|.|+|+||+|+|++++|+|+||||+++||+++|+|||||+||||+++||.|
T Consensus 507 iDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfR 586 (790)
T KOG0056|consen 507 IDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFR 586 (790)
T ss_pred hhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHH
Confidence 99999999999999888877766666677999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccc
Q 005205 508 SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST 587 (709)
Q Consensus 508 ly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT 587 (709)
|||.++|+|+|||+||+++..++||++||+||||..|||+||..||+||+|+|++||+++|||.|++||-|.++|+||+|
T Consensus 587 ffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t 666 (790)
T KOG0056|consen 587 FFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNT 666 (790)
T ss_pred HhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEe
Q 005205 588 VVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLE 667 (709)
Q Consensus 588 ~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~ 667 (709)
.|||||.+||||||||+||||+++|+|.|++|||||||||..||+.||.+|.++..+||.|+|||||||+-+||.|+|++
T Consensus 667 ~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~ 746 (790)
T KOG0056|consen 667 RVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVIS 746 (790)
T ss_pred hhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecChHHHhhc-ccHHHHHHHhhhc
Q 005205 668 NGKVIEQGSHDDLLTK-AGRYAQLWGQQNN 696 (709)
Q Consensus 668 ~G~Ive~Gth~eLl~~-~g~Y~~l~~~q~~ 696 (709)
+|+|||.|+||||+++ +|.|++||+.|+.
T Consensus 747 ~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 747 NGRIVERGRHEELLKRDGGAYADMWQAQQA 776 (790)
T ss_pred CCeEeecCcHHHHHhccCCcHHHHHHHHHh
Confidence 9999999999999997 8999999977644
No 5
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-108 Score=958.90 Aligned_cols=572 Identities=31% Similarity=0.426 Sum_probs=482.7
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Q 005205 107 IFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYG 186 (709)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (709)
.+.+++++.+ |++ +.++++.++.++......+..+++..++..+.....+ .+......+ ..++++++
T Consensus 651 s~~~i~k~~~----pe~-~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~--~~~~~~~~~------al~f~~l~ 717 (1228)
T KOG0055|consen 651 SFWRIFKLNK----PEW-PYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDD--ELKREVRAW------ALIFLGLG 717 (1228)
T ss_pred cHHHHHHhcc----chh-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChH--HHHHHHHHH------HHHHHHHH
Confidence 3566767766 444 4445555544443333344445666666655422111 111111111 11122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc-cChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005205 187 IARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLS-RETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (709)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~-~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (709)
+ ...+..+++.++|...++++..++|.++|+++++++++|||+ +++|.|.+|+..|...++..+..-+..++..+.
T Consensus 718 ~---~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~ 794 (1228)
T KOG0055|consen 718 I---VSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIA 794 (1228)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 2 334667889999999999999999999999999999999985 334999999999999998888777777777665
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHH
Q 005205 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY 345 (709)
Q Consensus 266 ~~~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~ 345 (709)
.+ ++..++.|.++|.++++++...|++.+..+...++.....++..+...+.+....|.+.|||||++|+.|+++.+.|
T Consensus 795 ~~-~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y 873 (1228)
T KOG0055|consen 795 AV-IIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELY 873 (1228)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHH
Confidence 43 33445677789999999888888877777766677777777777778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (709)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~ 425 (709)
.+..++..+...+...+.++.....+.+..+..++.+++|++++.+|.+++.+++-....+..-...+.+...+.+++.+
T Consensus 874 ~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~k 953 (1228)
T KOG0055|consen 874 KEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISK 953 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHH
Confidence 99999999999998888888777777777788899999999999999999999987766666666667778888899999
Q ss_pred HHHHHHHHHHHhcccccccCCC-CCCCCCCCCceEEEEeEEEEec--CCcccceeeeeEeeCCcEEEEEcCCCccHHHHH
Q 005205 426 SLVDMKSMFQLLEEKADIQDRD-NAMPLNLKGGSIQFDNVHFSYL--TERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL 502 (709)
Q Consensus 426 ~~~s~~rl~~~l~~~~~~~~~~-~~~~~~~~~g~I~f~nVsF~Y~--~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~ 502 (709)
+..++.+++++++++|.++.++ .....+...|+|+|+||+|+|| |+.+||+|+||+|++||++||||||||||||++
T Consensus 954 a~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI 1033 (1228)
T KOG0055|consen 954 AKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVI 1033 (1228)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHH
Confidence 9999999999999998665432 1111233468999999999999 567999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCC
Q 005205 503 RLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFP 582 (709)
Q Consensus 503 ~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp 582 (709)
.||.|||||++|.|.|||+||+++++++||++||+|.|||.||++||||||+||.++++++||.+|||.|++|+||.+||
T Consensus 1034 ~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP 1113 (1228)
T KOG0055|consen 1034 SLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLP 1113 (1228)
T ss_pred HHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999966699999999999999999999999
Q ss_pred CCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCe
Q 005205 583 AKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDE 662 (709)
Q Consensus 583 ~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~ 662 (709)
+||||.|||+|.+||||||||||||||++|||+||||||||||||+++|+.||++|++.+.|||+|+||||||||++||.
T Consensus 1114 ~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~ 1193 (1228)
T KOG0055|consen 1114 QGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADV 1193 (1228)
T ss_pred CcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCEEEEecChHHHhhcccHHHHHHHhhh
Q 005205 663 IIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 695 (709)
Q Consensus 663 Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 695 (709)
|+|++||+|+|+|||+||++++|.|++|+..|.
T Consensus 1194 I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1194 IAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred EEEEECCEEEecccHHHHHhCCCchHHHhhhcc
Confidence 999999999999999999999999999999885
No 6
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=5.1e-103 Score=925.22 Aligned_cols=604 Identities=25% Similarity=0.366 Sum_probs=501.3
Q ss_pred CccCceeeccCC--CCcccee----cccccCC-----CcccccccccccCCCChhhhhhhHHHHHHHHHHHhcccchhHH
Q 005205 56 RFSPITSFLSDS--ASSRSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFR 124 (709)
Q Consensus 56 ~~~~~~~~~~~~--~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 124 (709)
+.+++++++.|| +.|++.+ |++.|+| +|+++|.+. + .....+++++++++ +++
T Consensus 92 ~~~~~~~~i~dP~~~~g~~~~~~~ef~~~~~g~~l~~~~~~~~~~~---~--------~~~~~~~~~~~~~~-----~~~ 155 (708)
T TIGR01193 92 GVTKNHLIIADPDPTVGITKISKEDFYEEWTGIAIFISPTPEYKPI---K--------EKENSLLKFIPLIT-----RQK 155 (708)
T ss_pred EEeCCEEEEEcCCcccCCEEecHHHHHhhCCCEEEEEEeccccccc---c--------cccchHHHHHHHHH-----HHH
Confidence 356889999999 8999888 8899999 788777211 0 01123456666665 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 125 LRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFS 204 (709)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (709)
+.++..+++.++..++.++.|++++.++|.+..... . ..+..+. ..+++ ..++..++.+++.++..
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~-~------~~l~~~~----~~~~~---~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 156 KLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM-M------GTLGIIS----IGLII---AYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-h------HHHHHHH----HHHHH---HHHHHHHHHHHHHHHHH
Confidence 666667777777888999999999999998763211 0 0111111 11111 11233467788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 005205 205 KVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAW 284 (709)
Q Consensus 205 ~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 284 (709)
+++.++..++|.++|+|++++|+.||+++++|++.+|++ |.+.+..++.......+..++.++ +.+++++.++|++++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~l 299 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILV-IVGLFLVRQNMLLFL 299 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHH
Confidence 999999999999999999999999999999999999998 556665554443333333333222 222344556788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 285 ITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLA 364 (709)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (709)
++++.+++++++...+.+..++..++..+..++..+.+.|.++|+++||++|.|+.+.++|++..+++.+...+..+...
T Consensus 300 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (708)
T TIGR01193 300 LSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQ 379 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777776666666666677777777788889999999999999999999999999999999888888887776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 005205 365 FLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQ 444 (709)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~~~~ 444 (709)
.......++..+..++++++|++++.+|.+|+|++++|..+...+..|+..+...+.+++++..+++|+.++++.+++..
T Consensus 380 ~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 459 (708)
T TIGR01193 380 GQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI 459 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 55554444444555667778999999999999999999999999999999999999999999999999999998766543
Q ss_pred CCCCCCCCCCCCceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC
Q 005205 445 DRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (709)
Q Consensus 445 ~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~ 524 (709)
+.....+.+...+.|+|+||+|+|++++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|++
T Consensus 460 ~~~~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 539 (708)
T TIGR01193 460 NKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLK 539 (708)
T ss_pred ccccccCCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHH
Confidence 22111112223468999999999986678999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHhhcceEEEcCCCCCCchhHHHHHHcC-CCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 525 ~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g-~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+++.+++|++|+||||||+||+|||+|||++| +|+++++++++||+.|+++|||++||+||||+|||+|.+||||||||
T Consensus 540 ~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQR 619 (708)
T TIGR01193 540 DIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQR 619 (708)
T ss_pred HcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999 58899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
|+||||++++|+|||||||||+||++||+.|+++|+++ +++|+|+||||+++++.||+|+|||+|+|+|.|+|+||+++
T Consensus 620 ialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 620 IALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999999999985 78999999999999999999999999999999999999999
Q ss_pred ccHHHHHHH
Q 005205 684 AGRYAQLWG 692 (709)
Q Consensus 684 ~g~Y~~l~~ 692 (709)
+|.|+++|+
T Consensus 699 ~~~y~~l~~ 707 (708)
T TIGR01193 699 NGFYASLIH 707 (708)
T ss_pred CCcHHHHhh
Confidence 999999985
No 7
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.5e-102 Score=899.58 Aligned_cols=552 Identities=35% Similarity=0.537 Sum_probs=473.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 126 RVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSK 205 (709)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (709)
.+.++.++.++..++.+..|++++.++|.+.. ... ....+....+.+. .+..++.+...++..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~------~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~ 78 (567)
T COG1132 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALLA---DLG------ELLELLLLLLLLA-------LLGGVLRALQSYLGSR 78 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHH------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 66777777777888999999999999998751 000 0001100001111 1223456666777778
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 005205 206 VALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWI 285 (709)
Q Consensus 206 ~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~i 285 (709)
++.++..++|.++|++++++|+++|++.++|++.+++++|.+.++.++......+...++.+ +...++++..+|.++++
T Consensus 79 ~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~l~ 157 (567)
T COG1132 79 LGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLL-IGSLVLLFSLSWRLALI 157 (567)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHhHHHHHH
Confidence 88999999999999999999999999999999999999999998887766533333233222 22334455567777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 286 TSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAF 365 (709)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (709)
.++..+++.+....+.+..++..+..++..++.++.+.|.++|+++||+|+.|+.+.++|++..+.+.+...+..+..+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (567)
T COG1132 158 LLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEAL 237 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666665555555554446667777778888999999999999999999999999999999999888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q 005205 366 LNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQD 445 (709)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~~~~~ 445 (709)
..+....+..+....++++|.+.+.+|.+++|++++|+.+...+..|+..+...+..++.+..+.+|++++++.+++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 317 (567)
T COG1132 238 LAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED 317 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 77677777777777888889999999999999999999999999999999999999999999999999999998776544
Q ss_pred CCCCCCCCCCCceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC
Q 005205 446 RDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (709)
Q Consensus 446 ~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~ 525 (709)
.... .....++|+|+||+|+|++++++|+|+||+|+|||++|||||||||||||++||+|||+|++|+|++||+||++
T Consensus 318 ~~~~--~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~ 395 (567)
T COG1132 318 PPDP--LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRD 395 (567)
T ss_pred CCCC--CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhh
Confidence 3222 22234679999999999877899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 005205 526 VTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (709)
Q Consensus 526 ~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRia 605 (709)
++.++||++|++|||||+||+|||+|||+||+|++||||+++|||.|++||||+++|+||||+|||+|.+||||||||||
T Consensus 396 i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 396 ISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred cCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhccc
Q 005205 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAG 685 (709)
Q Consensus 606 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g 685 (709)
||||++|||||||||||||+||++||+.|+++++++.++||+|+||||++|+++||+|+|||+|+|+|.|+|+||++++|
T Consensus 476 iARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g 555 (567)
T COG1132 476 IARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGG 555 (567)
T ss_pred HHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCC
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q 005205 686 RYAQLWGQQNN 696 (709)
Q Consensus 686 ~Y~~l~~~q~~ 696 (709)
.|++||+.|..
T Consensus 556 ~y~~l~~~~~~ 566 (567)
T COG1132 556 LYARLYQAQGG 566 (567)
T ss_pred HHHHHHHHhhc
Confidence 99999998853
No 8
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.4e-102 Score=902.37 Aligned_cols=570 Identities=21% Similarity=0.288 Sum_probs=467.9
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Q 005205 107 IFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYG 186 (709)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (709)
.+++++++++ ++++.+++++++.++..++.+..|++++.++|.+.....+. ..+..+. ..++++
T Consensus 9 ~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~------~~~~~~~----~~~~~~- 72 (588)
T PRK11174 9 LTRWLKQQSK-----PAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPR------EALLPPF----ILLILL- 72 (588)
T ss_pred hhHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch------hHHHHHH----HHHHHH-
Confidence 3566777876 56777888888888888999999999999999764211110 0111111 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005205 187 IARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILE 266 (709)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 266 (709)
.++..++.+++.++..+++.++..++|.++|+|++++|+.+|+++++|++.+++++|.+.++.++...+..++..++.
T Consensus 73 --~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~ 150 (588)
T PRK11174 73 --FVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLV 150 (588)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 123345677888899999999999999999999999999999999999999999999999988776555555555443
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHH
Q 005205 267 ISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYD 346 (709)
Q Consensus 267 ~~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~ 346 (709)
.++. .++++.++|.+++++++++++.+++...+.+..++..++.++..++.++.+.|.++|+++||+|++|+.+.++|+
T Consensus 151 ~~~~-~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~ 229 (588)
T PRK11174 151 PLLI-LIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIR 229 (588)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHH
Confidence 3322 234455678787777666666555555555555666666677778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH---------HHHHHHHHHHHHHHHHHH
Q 005205 347 EFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDL---------VMVNGLLFQLSLPLNFLG 417 (709)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l---------~a~~~~~~~l~~pl~~l~ 417 (709)
+..+++.+...+..+..........++..+...++++++++.+ .|.+|+|++ ++++.+...+..|+..++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~ 308 (588)
T PRK11174 230 SASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLG 308 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999988887777666555554444433333333334444443 488888864 223356677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCcc
Q 005205 418 SVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSG 497 (709)
Q Consensus 418 ~~~~~l~~~~~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsG 497 (709)
..+..++++..+++|+.++++.+++..............++|+|+||+|.|++++++|+|+||+|+|||++||||+||||
T Consensus 309 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsG 388 (588)
T PRK11174 309 TFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAG 388 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCC
Confidence 99999999999999999999876532211111111112347999999998876788999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHH
Q 005205 498 KSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577 (709)
Q Consensus 498 KSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~ 577 (709)
||||++||+|+| |++|+|++||+|+++++.+++|++|+||||||+||+|||+|||+||+|+++|||+++||+.|+++||
T Consensus 389 KSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~ 467 (588)
T PRK11174 389 KTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEF 467 (588)
T ss_pred HHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHH
Q 005205 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTA 657 (709)
Q Consensus 578 I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti 657 (709)
|++||+||||.|||+|.+|||||||||+|||||++||+||||||||||||++||+.|+++|+++.+++|+|+||||++++
T Consensus 468 i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i 547 (588)
T PRK11174 468 LPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDL 547 (588)
T ss_pred HHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred hhcCeEEEEeCCEEEEecChHHHhhcccHHHHHHHhhhcc
Q 005205 658 MQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNT 697 (709)
Q Consensus 658 ~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 697 (709)
++||+|+|||+|+|+|+|+|+||++++|.|+++|..|.++
T Consensus 548 ~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~q~~~ 587 (588)
T PRK11174 548 AQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQEE 587 (588)
T ss_pred HhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999988654
No 9
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.4e-102 Score=920.25 Aligned_cols=602 Identities=25% Similarity=0.344 Sum_probs=501.2
Q ss_pred CccCceeeccCCCCcccee----cccccCC-----CcccccccccccCCCChhhhhhhHHHHHHHHHHHhcccchhHHHH
Q 005205 56 RFSPITSFLSDSASSRSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFRLR 126 (709)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 126 (709)
+.+++++++.||+.|++.+ |+..|+| +|+++|.+ +......++.++++++ ++++.
T Consensus 92 ~~~~~~~~i~dP~~g~~~~~~~e~~~~~~g~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~l~-----~~~~~ 155 (710)
T TIGR03796 92 GFRGGRVYLNDPALGPRTVSLEEFDESFTGVVLTFEPGPEFQK-----------GGRKPSLLRALWRRLR-----GSRGA 155 (710)
T ss_pred EEeCCEEEEECCCCCCEEccHHHHHhhCCCeEEEEEECccccc-----------cCcCcccHHHHHHHHH-----HHHHH
Confidence 4678899999999999987 8899999 78888721 1111134556666665 44556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 127 VITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKV 206 (709)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (709)
+...+++.++..++.++.|++++.++|.+...... ..+..+.. .++ +..++..++.+++.++..++
T Consensus 156 ~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~-------~~l~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~ 221 (710)
T TIGR03796 156 LLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ-------DWLRPLLL----GMG---LTALLQGVLTWLQLYYLRRL 221 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-------hHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHH
Confidence 66677777778888999999999999987642211 11111111 111 11123346778899999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005205 207 ALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWIT 286 (709)
Q Consensus 207 ~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~i~ 286 (709)
+.++..++|.++|+|++++|+.+|+++++|++.+|+++| ..+..++...+..++..++.+++. .++++.++|.+++++
T Consensus 222 ~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~ 299 (710)
T TIGR03796 222 QIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFY-ALLMLLYDPVLTLIG 299 (710)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887 456655544444444333333222 234455778888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 287 SLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFL 366 (709)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (709)
++.+++++++...+.+...+..++..+..++..+.+.|.++|+++||+++.|+.+.++|++...++.+...+..+.....
T Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (710)
T TIGR03796 300 IAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQIL 379 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666666666666666666777788899999999999999999999999999998888888887777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 005205 367 NFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDR 446 (709)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~~~~~~ 446 (709)
..+..++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+...+.+++++..+++|+.++++.+++....
T Consensus 380 ~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~ 459 (710)
T TIGR03796 380 GVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLE 459 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 66555555566667778899999999999999999999999999999999999999999999999999999876553322
Q ss_pred C------CCCCCCCCCceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEEC
Q 005205 447 D------NAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (709)
Q Consensus 447 ~------~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~id 519 (709)
. ...+.+...+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 460 ~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 539 (710)
T TIGR03796 460 EEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFD 539 (710)
T ss_pred cccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 1 00110122468999999999985 4689999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChH
Q 005205 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599 (709)
Q Consensus 520 G~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 599 (709)
|+|+++++.+++|++|+||||||+||+|||||||++++|+++++++++||+.++++++|.+||+||||+|||+|.+||||
T Consensus 540 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGG 619 (710)
T TIGR03796 540 GIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGG 619 (710)
T ss_pred CEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHH
Q 005205 600 EKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDD 679 (709)
Q Consensus 600 QrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~e 679 (709)
|||||+|||||+++|+||||||||||||++||+.|.++|++ .++|+|+||||+++++.||+|+|||+|+|+|.|+|+|
T Consensus 620 QrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 620 QRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred HHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999999987 5899999999999999999999999999999999999
Q ss_pred HhhcccHHHHHH
Q 005205 680 LLTKAGRYAQLW 691 (709)
Q Consensus 680 Ll~~~g~Y~~l~ 691 (709)
|++++|.|++||
T Consensus 698 Ll~~~~~y~~l~ 709 (710)
T TIGR03796 698 LWAVGGAYARLI 709 (710)
T ss_pred HHHcCCcHHHHh
Confidence 999999999987
No 10
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-105 Score=832.53 Aligned_cols=494 Identities=56% Similarity=0.886 Sum_probs=471.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005205 199 RTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKF 278 (709)
Q Consensus 199 ~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (709)
|..++..+++...+.+..+.|.|+++|++.||.++.+|.+.+.+.+..+.++.+....+.+++|.++.+.++++++.+.+
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 45567788888889999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 005205 279 GAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALK 358 (709)
Q Consensus 279 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~ 358 (709)
+|+.+.+.++.+.+|.++.....-++..+++.++++.++.++...+++-|.++||.|+.|+.+..+|++..+.|.+...|
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 88888888888889999888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005205 359 TQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLE 438 (709)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~ 438 (709)
......+++.++..++...+..++..+...+..|++|+|+++....++.+++.|++.++..+.++.++..++++.+++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 99888999999999999888888889999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCC-CCCceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEE
Q 005205 439 EKADIQDRDNAMPLN-LKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517 (709)
Q Consensus 439 ~~~~~~~~~~~~~~~-~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~ 517 (709)
.+.+..+.+..++.+ ...|.|.|+||+|.|.+.+|+|+++||++++|+++||||+||+||||+.+||.||||+++|.|.
T Consensus 242 ~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~ 321 (497)
T COG5265 242 VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT 321 (497)
T ss_pred cchhhccCCCCccccccccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEE
Confidence 988776665555554 3457899999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCC
Q 005205 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLS 597 (709)
Q Consensus 518 idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LS 597 (709)
+||+|+++...+++|+.||+||||..|||+||..||.||+|++|+||++.|++.|++|+||+++|+||||.|||+|-.||
T Consensus 322 id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklS 401 (497)
T COG5265 322 IDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLS 401 (497)
T ss_pred EcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecCh
Q 005205 598 GGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSH 677 (709)
Q Consensus 598 GGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth 677 (709)
||||||+||||++||+|+||+|||||||||+.||+.||.+|++..+++|+++||||||||-+||+|+||++|+|+|.|+|
T Consensus 402 ggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h 481 (497)
T COG5265 402 GGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTH 481 (497)
T ss_pred CchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccHHHHHHH
Q 005205 678 DDLLTKAGRYAQLWG 692 (709)
Q Consensus 678 ~eLl~~~g~Y~~l~~ 692 (709)
+||++++|.|++||.
T Consensus 482 ~~ll~~~g~ya~mw~ 496 (497)
T COG5265 482 EELLAAGGLYAEMWR 496 (497)
T ss_pred HHHHHcCChHHHHhc
Confidence 999999999999996
No 11
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=4e-101 Score=906.08 Aligned_cols=596 Identities=26% Similarity=0.350 Sum_probs=491.6
Q ss_pred CccCceeeccCCCCccc-ee----cccccCC-----CcccccccccccCCCChhhhhhhHHHHHHHHHH-HhcccchhHH
Q 005205 56 RFSPITSFLSDSASSRS-IL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASY-LWMKDNFEFR 124 (709)
Q Consensus 56 ~~~~~~~~~~~~~~~~~-~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~ 124 (709)
+.+++++++.||+.|++ .+ |+.. +| +|+ |. . ++ ..++.++++ ++ +++
T Consensus 78 ~~~~~~~~i~dP~~g~~~~~~~~e~~~~-~g~~~~~~~~--~~----~-----~~-----~~~~~~~~~~~~-----~~~ 135 (686)
T TIGR03797 78 PVSRGGYEIFDPATGTRRRVDAAMAATL-APEAYMFYRP--LP----D-----KA-----LGLRDLLRFALR-----GAR 135 (686)
T ss_pred EEcCCEEEEECCCCCCCcccCHHHHHhc-CCEEEEEecC--Cc----c-----cc-----ccHHHHHHHHHh-----hHH
Confidence 46888999999999997 55 5555 55 343 41 0 10 113334344 22 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 125 LRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFS 204 (709)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (709)
+.++..+++.++..++.++.|++++.++|.+...... ..+..+. ..+++ ..++..++.+++.++..
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~-------~~l~~~~----~~~~~---~~~~~~~~~~~~~~~~~ 201 (686)
T TIGR03797 136 RDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADR-------SLLVQIA----LALLA---AAVGAAAFQLAQSLAVL 201 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCh-------hHHHHHH----HHHHH---HHHHHHHHHHHHHHHHH
Confidence 6667777777888899999999999999988632110 1111111 11111 11223467788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 005205 205 KVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAW 284 (709)
Q Consensus 205 ~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 284 (709)
+++.++..++|.++|+|++++|+.||+++++|++.++++ +.+.+..++...+...+..++..+ +..++++.++|.+++
T Consensus 202 ~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~l 279 (686)
T TIGR03797 202 RLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFAL-LNLGLMFYYSWKLAL 279 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887 466666655443333333332222 233445566788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 285 ITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLA 364 (709)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (709)
++++++++++++.....+...+..++..+..++..+.+.|.++|+++||+++.|+++.++|++..+++.+...+..+...
T Consensus 280 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (686)
T TIGR03797 280 VAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIEN 359 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666655566666666666677777888999999999999999999999999999999999888888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 005205 365 FLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQ 444 (709)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~~~~ 444 (709)
.......++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+...+.+++++..+++|+.++++.+++..
T Consensus 360 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 439 (686)
T TIGR03797 360 LLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD 439 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 66655555555666677788999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCCCCCCCCceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeC
Q 005205 445 DRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI 523 (709)
Q Consensus 445 ~~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di 523 (709)
+.. ..+ ....+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+
T Consensus 440 ~~~-~~~-~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i 517 (686)
T TIGR03797 440 EAK-TDP-GKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDL 517 (686)
T ss_pred cCc-CCC-CCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEc
Confidence 211 111 112357999999999974 56899999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 524 CEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 524 ~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
++++.+++|++||||||||+||+|||+|||++|+| +++||+++||+.|+++++|++||+||||+|||+|.+||||||||
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQR 596 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQR 596 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
|+|||||++||+|||||||||+||++||++|+++|+++ ++|+|+||||+++++.||+|+|||+|+|+|.|+|+||+++
T Consensus 597 ialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 597 LLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999999986 6899999999999999999999999999999999999999
Q ss_pred ccHHHHHHHhh
Q 005205 684 AGRYAQLWGQQ 694 (709)
Q Consensus 684 ~g~Y~~l~~~q 694 (709)
+|.|+++|..|
T Consensus 675 ~~~y~~l~~~q 685 (686)
T TIGR03797 675 EGLFAQLARRQ 685 (686)
T ss_pred CcHHHHHHHhc
Confidence 99999999876
No 12
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.8e-100 Score=901.63 Aligned_cols=598 Identities=24% Similarity=0.329 Sum_probs=494.2
Q ss_pred CccCce-eeccCCCCc--ccee----cccccCC-----CcccccccccccCCCChhhhhhhHHHHHHHHHHHhcccchhH
Q 005205 56 RFSPIT-SFLSDSASS--RSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEF 123 (709)
Q Consensus 56 ~~~~~~-~~~~~~~~~--~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 123 (709)
+.++++ +++.||+.| ++.+ |+..|+| +|.++|.+.. . +.+ ....++.++++++ ++
T Consensus 79 ~~~~~~~~~i~DP~~g~~~~~~~~~e~~~~~~g~~l~~~~~~~~~~~~---~-~~~----~~~~~~~~~~~~~-----~~ 145 (694)
T TIGR03375 79 GIDEDGKARVLLPETGDGEQELSLDALEALYSGYAIFVRPQFRFDARA---D-ELI----SPRPKHWFWSTLK-----ES 145 (694)
T ss_pred EEcCCCcEEEEccCCCCCceEecHHHHHhhcCCeEEEEeccccccccc---c-ccc----ccccchHHHHHHH-----HH
Confidence 456776 999999999 8877 7788888 6877772110 0 000 1123445666665 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (709)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (709)
++.+...+++.++..++.++.|++++.++|.+..... . ..+..+. +++ ++ ..++..++.+++.++.
T Consensus 146 ~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~-~------~~l~~~~---~~~-~~---~~~~~~~~~~~~~~~~ 211 (694)
T TIGR03375 146 WPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA-F------ETLWVLA---IGV-AL---AIVFDFVLKTLRSYFL 211 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-H------hHHHHHH---HHH-HH---HHHHHHHHHHHHHHHH
Confidence 6666677777777888999999999999998753211 1 0111110 111 11 1123346788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 005205 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (709)
Q Consensus 204 ~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 283 (709)
.+.+.++..++|.++|+|++++|+.| +++++|++.+|+ +|.+.++.++.......+..++.+++. .++++.++|.++
T Consensus 212 ~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~ 288 (694)
T TIGR03375 212 DVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLF-LLVIAIIGGPLV 288 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHhHHH
Confidence 99999999999999999999999998 788999999888 577777776554443333333333222 234455678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 284 WITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSL 363 (709)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (709)
+++++.+++++++...+.+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+..
T Consensus 289 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (694)
T TIGR03375 289 WVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLS 368 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777776666666666666667777788888999999999999999999999999999999999988888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 005205 364 AFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADI 443 (709)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~~~ 443 (709)
........++..+..++++++|++++.+|.+|+|++++|+.+...+..|+..+...+.+++++..+++|+.++++.+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 448 (694)
T TIGR03375 369 NLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVER 448 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 76666655555556666778899999999999999999999999999999999999999999999999999999887653
Q ss_pred cCCCCCCCCCCCCceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEe
Q 005205 444 QDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522 (709)
Q Consensus 444 ~~~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~d 522 (709)
++.....+.+...+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|
T Consensus 449 ~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 528 (694)
T TIGR03375 449 PEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD 528 (694)
T ss_pred CCCCCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 322111111222467999999999985 4689999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHH
Q 005205 523 ICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (709)
Q Consensus 523 i~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQ 602 (709)
+++++++++|++|+||||||+||+|||+|||++++|+++++|+++|++.++++|+|++||+||||.+||+|.+|||||||
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ 608 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhh
Q 005205 603 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 603 RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
||+||||++++|+|||||||||+||++||+.|+++|+++.+++|+|+||||+++++.||+|+|||+|+|+|+|+|+||++
T Consensus 609 RlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999987
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
+
T Consensus 689 ~ 689 (694)
T TIGR03375 689 A 689 (694)
T ss_pred H
Confidence 5
No 13
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.2e-98 Score=883.29 Aligned_cols=605 Identities=28% Similarity=0.420 Sum_probs=501.3
Q ss_pred CccCceeeccCCCCc-ccee----cccccCC-----CcccccccccccCCCChhhhhhhHHHHHHHHHHHhcccchhHHH
Q 005205 56 RFSPITSFLSDSASS-RSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFRL 125 (709)
Q Consensus 56 ~~~~~~~~~~~~~~~-~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 125 (709)
+++++++++.||+.| ++.+ |+..|+| +|++ +. ++ + +...++.++++++ +++.
T Consensus 78 ~~~~~~~~i~Dp~~g~~~~i~~~e~~~~~~g~~l~~~~~~-~~----~~----~----~~~~~~~~~~~~~-----~~~~ 139 (694)
T TIGR01846 78 KLTANGVTIYDPPGDAPEVLSREVLEALWSGTVILLATRS-VA----GK----A----LKFGFSWFIPAII-----RYRK 139 (694)
T ss_pred EEcCCEEEEEcCCCCCceeeCHHHHHhhCCCeEEEEecCc-cc----cc----c----ccCcHHHHHHHHH-----HHHH
Confidence 467889999999998 6666 8888888 5654 41 10 0 0112445556655 3455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 126 RVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSK 205 (709)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (709)
.+...+++.++..++.++.|++++.++|.+...... ..+..+. +.+++ ..++..++.+++.++..+
T Consensus 140 ~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~-------~~l~~l~----~~~~~---~~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 140 QFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGL-------STLSVLA----LAMLA---VAIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh-------hHHHHHH----HHHHH---HHHHHHHHHHHHHHHHHH
Confidence 666677777778888999999999999987632111 1111111 11111 112334678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 005205 206 VALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWI 285 (709)
Q Consensus 206 ~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~i 285 (709)
++.++..++|.++|+|++++|+.||+++++|++.+|++ |.+.+..++......++..++..++. .++++.++|.++++
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl~-d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li 283 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARVR-ELEQIRNFLTGSALTVVLDLLFVVVF-LAVMFFYSPTLTGV 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999884 77777766544333333333222222 23445568888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 286 TSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAF 365 (709)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (709)
+++.+++++++...+.+..++..++..+..++.++.+.|.++|+++||++|.|+.+.++|++..+++.+...+..+..+.
T Consensus 284 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR01846 284 VIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNI 363 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776766666665655555555556667778889999999999999999999999999999999998888888777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q 005205 366 LNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQD 445 (709)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~~~~~ 445 (709)
......++..+..++++++|++++.+|.+|+|++++|..+...+..|+..+...+..++++..+++|+.++++.+++...
T Consensus 364 ~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 443 (694)
T TIGR01846 364 AGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS 443 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 66666555556666777889999999999999999999999999999999999999999999999999999987665322
Q ss_pred CCCCCCCCCCCceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC
Q 005205 446 RDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (709)
Q Consensus 446 ~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~ 524 (709)
. ...+.+...+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|++
T Consensus 444 ~-~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~ 522 (694)
T TIGR01846 444 A-GLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLA 522 (694)
T ss_pred C-CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehh
Confidence 1 11111222468999999999975 467999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 525 ~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
+++.+++|++|+||||||++|++||+|||++++|+++++++++||+.++++|+|++||+||||.+||+|.+|||||||||
T Consensus 523 ~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 523 IADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred hCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
+||||++++|+|||||||||+||++||+.|.+.|+++.+++|+|+||||+++++.||+|+||++|+|+|.|+|+||++++
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~ 682 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ 682 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcC
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhh
Q 005205 685 GRYAQLWGQQN 695 (709)
Q Consensus 685 g~Y~~l~~~q~ 695 (709)
|.|+++|+.|.
T Consensus 683 ~~y~~l~~~~~ 693 (694)
T TIGR01846 683 GLYARLWQQQS 693 (694)
T ss_pred ChHHHHHHhhc
Confidence 99999998763
No 14
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.8e-98 Score=881.14 Aligned_cols=563 Identities=27% Similarity=0.388 Sum_probs=471.3
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 005205 106 KIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGY 185 (709)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (709)
..+++++++++ +.++.++..+++.++.+++.+..|++++.++|.+..... .. .+...+. ++.
T Consensus 147 ~~~~~l~~~~~-----~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~-~~------~~~~~~~----~~~-- 208 (711)
T TIGR00958 147 DLLFRLLGLSG-----RDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG-PP------ALASAIF----FMC-- 208 (711)
T ss_pred hHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HH------HHHHHHH----HHH--
Confidence 35667777776 445667777778888889999999999999998753211 11 1111111 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005205 186 GIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (709)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (709)
+..++..++.+++.+++..++.++..++|.++|++++++|+.||++.++|++.+++++|.+.+...+...+..++..++
T Consensus 209 -~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~ 287 (711)
T TIGR00958 209 -LLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLV 287 (711)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112234567788888999999999999999999999999999999999999999999998888776655555555544
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHH
Q 005205 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY 345 (709)
Q Consensus 266 ~~~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~ 345 (709)
.+++.+ ++++.++|.++++.++.+++..++...+.+..++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|
T Consensus 288 ~~i~~~-~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~ 366 (711)
T TIGR00958 288 MLLGLL-GFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRF 366 (711)
T ss_pred HHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHH
Confidence 333322 3344567777777766666666666656666666666777777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (709)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~ 425 (709)
++..++..+...+.....+.......++..+..++++++|++++.+|.+|+|+++++..|..++..|+..++..+.++++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~ 446 (711)
T TIGR00958 367 KEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQ 446 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887776655554444444444445556667899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecC--CcccceeeeeEeeCCcEEEEEcCCCccHHHHHH
Q 005205 426 SLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (709)
Q Consensus 426 ~~~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~ 503 (709)
+..+.+|++++++.+++.++.....+ ....+.|+|+||+|+||+ ++++|+|+||+|+|||++|||||||||||||++
T Consensus 447 ~~~a~~ri~~~l~~~~~~~~~~~~~~-~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~ 525 (711)
T TIGR00958 447 AVGASEKVFEYLDRKPNIPLTGTLAP-LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAA 525 (711)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCC-CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999999988765432221111 122467999999999984 468999999999999999999999999999999
Q ss_pred HHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCC
Q 005205 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPA 583 (709)
Q Consensus 504 LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~ 583 (709)
+|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||+|||||||+||+|+++||++++|++.|++++||++||+
T Consensus 526 lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~ 605 (711)
T TIGR00958 526 LLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPN 605 (711)
T ss_pred HHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeE
Q 005205 584 KYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEI 663 (709)
Q Consensus 584 G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~I 663 (709)
||||.+||+|.+||||||||||||||+++||+||||||||||||++||+.|++ . ...++||+|+||||+++++.||+|
T Consensus 606 GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~I 683 (711)
T TIGR00958 606 GYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQI 683 (711)
T ss_pred ccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999 3 345789999999999999999999
Q ss_pred EEEeCCEEEEecChHHHhhcccHHHHHH
Q 005205 664 IVLENGKVIEQGSHDDLLTKAGRYAQLW 691 (709)
Q Consensus 664 ivl~~G~Ive~Gth~eLl~~~g~Y~~l~ 691 (709)
+|||+|+|+|+|+|+||++++|.|++|+
T Consensus 684 ivL~~G~ive~Gt~~eL~~~~~~y~~lv 711 (711)
T TIGR00958 684 LVLKKGSVVEMGTHKQLMEDQGCYKHLV 711 (711)
T ss_pred EEEECCEEEEeeCHHHHHhCCCchHhcC
Confidence 9999999999999999999999999863
No 15
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2e-100 Score=889.53 Aligned_cols=503 Identities=32% Similarity=0.457 Sum_probs=447.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 194 AFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGI 273 (709)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 273 (709)
...+++..++.+.++|...++|.++++.+++++++|||.+.+|++..++++|.+.++..++.-+..++..+.+++ ...+
T Consensus 86 ~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi-~g~i 164 (1228)
T KOG0055|consen 86 ISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFI-AGFV 164 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 566788899999999999999999999999999999999999999999999999998887766655555444332 3345
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHH
Q 005205 274 LAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYE 353 (709)
Q Consensus 274 l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~ 353 (709)
+.|...|.++++.+...|+..+....+.+...+...+.++..++..+.+.|.+.++|||.+|+.|+.+.++|.+..+...
T Consensus 165 i~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~ 244 (1228)
T KOG0055|consen 165 IGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENAL 244 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHH
Confidence 56667889999888888877777777777777777777888888999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 354 DAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSM 433 (709)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl 433 (709)
+...+...+.++......++.....+..+|+|+.++.++..+.|+++.....+..-...+.+....+..+..+.+++.++
T Consensus 245 k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I 324 (1228)
T KOG0055|consen 245 KFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRI 324 (1228)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHH
Confidence 88888777776665555566667788889999999999999999887665544444455666667778889999999999
Q ss_pred HHHhcccccccCCC-CCCCCCCCCceEEEEeEEEEecC--CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 434 FQLLEEKADIQDRD-NAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 434 ~~~l~~~~~~~~~~-~~~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
+++++..|.+.... .........|.|||+||+|+||. +.++|+|+||+||+||+|||||||||||||+++||.|||+
T Consensus 325 ~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd 404 (1228)
T KOG0055|consen 325 FETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD 404 (1228)
T ss_pred HHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99999988765432 12223334689999999999994 4589999999999999999999999999999999999999
Q ss_pred CCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCcccccc
Q 005205 511 THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590 (709)
Q Consensus 511 p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vG 590 (709)
|++|+|+|||.|+++++.++||++||+|.|||.||++||+|||+||+|++|++|+.+|||.|++|+||.+||+||||.||
T Consensus 405 P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vg 484 (1228)
T KOG0055|consen 405 PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVG 484 (1228)
T ss_pred CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCE
Q 005205 591 ERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGK 670 (709)
Q Consensus 591 e~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~ 670 (709)
|+|..|||||||||||||||++||+||+|||||||||+++|+.||++|++.++|||+|+||||||||++||+|+||++|+
T Consensus 485 e~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~ 564 (1228)
T KOG0055|consen 485 ERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGK 564 (1228)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChHHHhhcccHHHHHHHhhhcc
Q 005205 671 VIEQGSHDDLLTKAGRYAQLWGQQNNT 697 (709)
Q Consensus 671 Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 697 (709)
|||+|+|+||++.+|.|.+|++.|...
T Consensus 565 IvE~G~h~ELi~~~G~Y~~lv~~Q~~~ 591 (1228)
T KOG0055|consen 565 IVEQGTHDELIALGGIYSSLVRLQELE 591 (1228)
T ss_pred EEEecCHHHHHhccchHHHHHHHHhhh
Confidence 999999999999999999999999443
No 16
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.8e-98 Score=926.61 Aligned_cols=565 Identities=27% Similarity=0.374 Sum_probs=455.2
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 005205 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (709)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (709)
+++++++++ ++++.+++++++.++..++..+.|++++.++|.+.... . +......+.+ +++++++
T Consensus 813 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~---~~~~~~~~~l------~~~~~~i 877 (1466)
T PTZ00265 813 LRIVYREIF-----SYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFA-N---LEANSNKYSL------YILVIAI 877 (1466)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-H---HHHHHHHHHH------HHHHHHH
Confidence 445566665 44555677776777777788889999999999764211 0 0000111111 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--cChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005205 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLS--RETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (709)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~--~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (709)
+..++.+++.+++.++++++..++|.++|+|++++|++||++ +++|++.+++++|.+.++.++...+..++..++
T Consensus 878 ---~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~ 954 (1466)
T PTZ00265 878 ---AMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIV 954 (1466)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223567788999999999999999999999999999999986 889999999999999988776665555555554
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-----------------HHHHHHHHHHHHHHHHc
Q 005205 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTK-FRKA-----------------MNKADNDASTRAIDSLI 327 (709)
Q Consensus 266 ~~~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~-~~~~-----------------~~~~~~~~~~~~~e~l~ 327 (709)
.+++ ++++++.++|.+++++++ +++++...+.+..+. ..++ .++..++.+..++|.++
T Consensus 955 ~~i~-~~~~~~~~~~~l~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~ 1030 (1466)
T PTZ00265 955 LFLV-SMVMSFYFCPIVAAVLTG---TYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFY 1030 (1466)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHh
Confidence 4332 223445556665554332 222222222221111 1111 12234566789999999
Q ss_pred hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Q 005205 328 NYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLF 407 (709)
Q Consensus 328 ~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~ 407 (709)
|+++||+|+.|+++.++|++..+.+.+...+.....+....+...+..+..++++++|++++.+|.+|+|++++++.++.
T Consensus 1031 gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~ 1110 (1466)
T PTZ00265 1031 NMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFL 1110 (1466)
T ss_pred cHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999888887777776666666665555566677888999999999999999999887765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC-CCCC---CCCCCceEEEEeEEEEecC--CcccceeeeeE
Q 005205 408 QLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRD-NAMP---LNLKGGSIQFDNVHFSYLT--ERKILDGVSFV 481 (709)
Q Consensus 408 ~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~~~~~~~-~~~~---~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~ 481 (709)
....++..+...+.+++++.++++|++++++.+++++... .... .+...+.|+|+||+|+||+ +.+||+|+||+
T Consensus 1111 ~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~ 1190 (1466)
T PTZ00265 1111 FTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFS 1190 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEE
Confidence 5556788899999999999999999999998865432111 1111 1122468999999999983 45899999999
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCCCC--------------------------------------------------
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDT-------------------------------------------------- 511 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-------------------------------------------------- 511 (709)
|+||++||||||||||||||++||+|||+|
T Consensus 1191 i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1270 (1466)
T PTZ00265 1191 CDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDS 1270 (1466)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999
Q ss_pred ----CCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccc
Q 005205 512 ----HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST 587 (709)
Q Consensus 512 ----~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT 587 (709)
++|+|++||+|+++++.++||++||||||||+||+|||||||+||+|++++||+++||+.|++||||++||+||||
T Consensus 1271 ~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT 1350 (1466)
T PTZ00265 1271 TVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDT 1350 (1466)
T ss_pred ccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhhcCeEEE
Q 005205 588 VVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQCDEIIV 665 (709)
Q Consensus 588 ~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~aD~Iiv 665 (709)
.|||+|.+|||||||||||||||+|||+||||||||||||++||+.|+++|+++. ++||+|+||||++|+++||+|+|
T Consensus 1351 ~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivv 1430 (1466)
T PTZ00265 1351 NVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVV 1430 (1466)
T ss_pred ccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999999999984 69999999999999999999999
Q ss_pred EeC----CEEE-EecChHHHhh-cccHHHHHHHhh
Q 005205 666 LEN----GKVI-EQGSHDDLLT-KAGRYAQLWGQQ 694 (709)
Q Consensus 666 l~~----G~Iv-e~Gth~eLl~-~~g~Y~~l~~~q 694 (709)
|++ |++| |+|||+||++ ++|.|++||..|
T Consensus 1431 l~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1431 FNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred EeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 999 9955 9999999998 599999999876
No 17
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.5e-96 Score=849.15 Aligned_cols=566 Identities=23% Similarity=0.314 Sum_probs=469.2
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 005205 109 RTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIA 188 (709)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 188 (709)
++++++++ ++++.+++++++.++..++.+..|+++++++|....... .. ...+. ..+. .+.++++.+
T Consensus 5 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~-~~----~~~~~-~~~~-~~~~~~~~~- 71 (574)
T PRK11160 5 LPFLKLYK-----RHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGL-AG----LYSFN-YMLP-AAGVRGAAI- 71 (574)
T ss_pred HHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc----hhhHH-HHhH-HHHHHHHHH-
Confidence 34556665 456777788888888888999999999999997542111 00 00000 0000 111111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 189 RTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEIS 268 (709)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 268 (709)
+..++.+++.++..+.+.++..++|.++|+|++++|+.+|++.++|++.+++++|.+.++.++...+..++..++.++
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~ 149 (574)
T PRK11160 72 --GRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVIL 149 (574)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234567788888899999999999999999999999999999999999999999999998887666555555554433
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHH
Q 005205 269 MVSGILAYKFGAPFAWITSLSVVAYVVF-TLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (709)
Q Consensus 269 ~~~~~l~~~~~~~l~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~ 347 (709)
+. .++++.++|.++++++++++++.++ .....+..++..++.++..++.++.+.|.++|+++||+|+.|+++.++|++
T Consensus 150 ~~-~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~ 228 (574)
T PRK11160 150 VL-TIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQ 228 (574)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHH
Confidence 32 2344556788877765555444332 233445545566667778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 005205 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQ-LSLPLNFLGSVYRETVQS 426 (709)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~-l~~pl~~l~~~~~~l~~~ 426 (709)
..+++.+...+..+..+.......++..+..++++++|++. .+|.+|+|.++++..|... ...|+..+...+..++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~ 307 (574)
T PRK11160 229 TEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQV 307 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888887777666666555555556666778777 4899999999999887654 456888889999999999
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecCC-cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHH
Q 005205 427 LVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLL 505 (709)
Q Consensus 427 ~~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL 505 (709)
..+++|+.++++.+++..++....+ ....+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|
T Consensus 308 ~~s~~ri~~ll~~~~~~~~~~~~~~-~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll 386 (574)
T PRK11160 308 IASARRINEITEQKPEVTFPTTSTA-AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLL 386 (574)
T ss_pred HHHHHHHHHHHhCCCCCCCCcccCC-CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 9999999999988765332211111 1224579999999999853 6899999999999999999999999999999999
Q ss_pred hcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCc
Q 005205 506 FRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKY 585 (709)
Q Consensus 506 ~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~ 585 (709)
+|+|+|++|+|++||+|+++++.+++|++|+||||||+||++||+|||++++|+++++++++|++.+++++||++ |+||
T Consensus 387 ~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~Gl 465 (574)
T PRK11160 387 TRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGL 465 (574)
T ss_pred hcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-cccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEE
Q 005205 586 STVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIV 665 (709)
Q Consensus 586 dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iiv 665 (709)
||+|||+|.+|||||||||+||||+++||+|||||||||+||++||+.|+++|+++.+++|+|+||||+++++.||+|++
T Consensus 466 dT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~ 545 (574)
T PRK11160 466 NAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICV 545 (574)
T ss_pred CchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred EeCCEEEEecChHHHhhcccHHHHHHHh
Q 005205 666 LENGKVIEQGSHDDLLTKAGRYAQLWGQ 693 (709)
Q Consensus 666 l~~G~Ive~Gth~eLl~~~g~Y~~l~~~ 693 (709)
|++|+|+|.|+|+||++++|.|+++|+.
T Consensus 546 l~~G~i~~~g~~~~l~~~~g~y~~l~~~ 573 (574)
T PRK11160 546 MDNGQIIEQGTHQELLAQQGRYYQLKQR 573 (574)
T ss_pred EeCCeEEEeCCHHHHHhcCcHHHHHHhh
Confidence 9999999999999999999999999964
No 18
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=7.8e-96 Score=847.17 Aligned_cols=569 Identities=31% Similarity=0.425 Sum_probs=473.4
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 005205 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (709)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (709)
++.++.++++++ ++++.+++.+++.++..+..+..|++++.++|.+.... .. ..+..+ ...+++
T Consensus 10 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~------~~~~~~----~~~~~~ 73 (582)
T PRK11176 10 WQTFRRLWPTIA-----PFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKA-DR------SVLKWM----PLVVIG 73 (582)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ch------hHHHHH----HHHHHH
Confidence 344566667665 34556666666666777777888999999999765311 00 011111 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005205 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (709)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (709)
+.+ +..++.+++.++..+++.++..++|.++|+|+.++|..+|++.++|++.+++++|.+.+...+...+..++..+
T Consensus 74 ~~l---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T PRK11176 74 LMI---LRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 22355667778888899999999999999999999999999999999999999998888776655555555555
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHH
Q 005205 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (709)
Q Consensus 265 ~~~~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~ 344 (709)
+.+++.++ +++.++|.+++++++++++..++.....+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++
T Consensus 151 ~~~~~~~~-~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~ 229 (582)
T PRK11176 151 ASIIGLFI-MMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKR 229 (582)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHH
Confidence 44433333 33446777777766666555555555555555666666677778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (709)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~ 424 (709)
|++..+++.+...+..+.......+..++..+...+++++|++.+.+|.+|+|+++++..++..+..|+..+...+..++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~ 309 (582)
T PRK11176 230 FDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 309 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888877766666666655555666667788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHH
Q 005205 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (709)
Q Consensus 425 ~~~~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~ 503 (709)
++..+++|+.++++.+++...... ..++..+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||++
T Consensus 310 ~~~~~~~ri~~~~~~~~~~~~~~~--~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ 387 (582)
T PRK11176 310 RGMAACQTLFAILDLEQEKDEGKR--VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHHHHHHHHHHhcCCCcCCCCCc--CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHH
Confidence 999999999999986644221111 11122357999999999985 478999999999999999999999999999999
Q ss_pred HHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCC-CCHHHHHHHHHHHchHHHHHhCC
Q 005205 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS-ATEEEVYDAARRAAIHDTIMNFP 582 (709)
Q Consensus 504 LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~-~s~~ei~~A~~~a~l~~~I~~Lp 582 (709)
+|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|+|||+|||++|+|+ ++|+|+++|++.++++++|++||
T Consensus 388 ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp 467 (582)
T PRK11176 388 LLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMD 467 (582)
T ss_pred HHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999765 79999999999999999999999
Q ss_pred CCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCe
Q 005205 583 AKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDE 662 (709)
Q Consensus 583 ~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~ 662 (709)
+||||.+||+|.+|||||||||+|||||+++|+||||||||||||++||+.|.++|+++.++||+|+||||+++++.||+
T Consensus 468 ~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~ 547 (582)
T PRK11176 468 NGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADE 547 (582)
T ss_pred cccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred EEEEeCCEEEEecChHHHhhcccHHHHHHHhhh
Q 005205 663 IIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 695 (709)
Q Consensus 663 Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 695 (709)
|++||+|+|+|.|+|+||+++++.|+++|..|.
T Consensus 548 Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~~~ 580 (582)
T PRK11176 548 ILVVEDGEIVERGTHAELLAQNGVYAQLHKMQF 580 (582)
T ss_pred EEEEECCEEEEeCCHHHHHhCCChHHHHHHHHh
Confidence 999999999999999999999999999998774
No 19
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.6e-95 Score=842.68 Aligned_cols=570 Identities=26% Similarity=0.366 Sum_probs=461.9
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 005205 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (709)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (709)
++.++++..|+. ++++.+++.+++.++.+++.+..|++++.++|.+...... ... .++.. + +.
T Consensus 8 ~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~-------~~~-~~~~~-~---~~ 70 (592)
T PRK10790 8 WPTLKRLLAYGS-----PWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNL-------PLG-LVAGL-A---AA 70 (592)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------chh-HHHHH-H---HH
Confidence 344555555554 4566667777777788889999999999999987532110 000 01110 0 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005205 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (709)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (709)
+.+..++..++.+++.++...++.++..++|.++|+|++++|.++|+++++|++.+++++|.+.+..++......++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~ 150 (592)
T PRK10790 71 YVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111223456788889999999999999999999999999999999999999999999999988877665555555554
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHH
Q 005205 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (709)
Q Consensus 265 ~~~~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~ 344 (709)
+.++ +.+++++.++|.++++.++++++.+++.....+..++..++.++..++..+.+.|.+.|+++||+|+.|+.+.++
T Consensus 151 ~~~~-~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~ 229 (592)
T PRK10790 151 ALIG-AMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGER 229 (592)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHH
Confidence 3332 222334446777777666555554444444444445555555566677888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 345 YDEFLRRYEDAALKTQRSLAFL-NFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRET 423 (709)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l 423 (709)
|.+..+++.+...+..+..+.. .....++..+...++++++++ +..|.+|+|.++++..|+..+..|+..++..+..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~ 308 (592)
T PRK10790 230 MGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSML 308 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888777766665544432 222222222222222233333 67899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHH
Q 005205 424 VQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (709)
Q Consensus 424 ~~~~~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~ 503 (709)
+++..+++|+.++++.+++.... .. .+...++|+|+||+|+|++++++|+|+||+|+|||++||||+||||||||++
T Consensus 309 ~~~~~s~~ri~~~l~~~~~~~~~-~~--~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~ 385 (592)
T PRK10790 309 QQAVVAGERVFELMDGPRQQYGN-DD--RPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLAS 385 (592)
T ss_pred HHHHHHHHHHHHHhcCCCccCCC-Cc--cCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999999999875432111 11 1122357999999999986678999999999999999999999999999999
Q ss_pred HHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCC
Q 005205 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPA 583 (709)
Q Consensus 504 LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~ 583 (709)
+|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||+|||+|||++|+ +++|+++++||+.++++++|++||+
T Consensus 386 lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~ 464 (592)
T PRK10790 386 LLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPD 464 (592)
T ss_pred HHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999998 6899999999999999999999999
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeE
Q 005205 584 KYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEI 663 (709)
Q Consensus 584 G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~I 663 (709)
||||.+||+|.+|||||||||+|||||++||||||||||||+||++||+.|.+.|+++.++||+|+||||+++++.||+|
T Consensus 465 Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~i 544 (592)
T PRK10790 465 GLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTI 544 (592)
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred EEEeCCEEEEecChHHHhhcccHHHHHHHhhhcc
Q 005205 664 IVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNT 697 (709)
Q Consensus 664 ivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 697 (709)
++||+|+|+|.|+|+||+++++.|+++++.|...
T Consensus 545 i~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~~~~ 578 (592)
T PRK10790 545 LVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQLAG 578 (592)
T ss_pred EEEECCEEEEEcCHHHHHhCCCHHHHHHHHHhhh
Confidence 9999999999999999999999999999988443
No 20
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-94 Score=786.03 Aligned_cols=549 Identities=27% Similarity=0.350 Sum_probs=469.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 132 GFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKVALRTI 211 (709)
Q Consensus 132 ~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (709)
++.+++.++.+...+++...++.+..... .. .+... +..+++..+ +..++.+.+..+..+.+.++.
T Consensus 7 ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~~------~l~~~----~~~l~~~~~---lRa~l~~~~~~~~~~aa~~~~ 72 (559)
T COG4988 7 LLAVLSGIAIIAQAALLADILTKLIEGQL-FQ------SLLPL----LILLLIALV---LRAFLAWLRERLGYRAAAKVR 72 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-HH------HHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555566667777776653211 10 11111 111222222 334667788888889999999
Q ss_pred HHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 005205 212 RSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVV 291 (709)
Q Consensus 212 ~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~i~~~~~~ 291 (709)
.++|+++++|+.++++.+-.+.++|+..+.+.+..+.++.++...++..+.+++.-.+ +.+.++.++|.-++++++++|
T Consensus 73 ~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~-i~i~v~~~~w~aalIllit~P 151 (559)
T COG4988 73 ASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLL-ILIAIFFFNWAAALILLITAP 151 (559)
T ss_pred HHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888777766655543222 223445568888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 292 AYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQN 371 (709)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (709)
+.+++++.+....++..+++.+....+++.+.|.++|+.|+|.|+..+...++..+..+++++..++..+..-.......
T Consensus 152 lIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLe 231 (559)
T COG4988 152 LIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLE 231 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888877777778888889999999999999999999999999999999999999999998886655566666
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCC-
Q 005205 372 VIFSAALSTAMVLCSHGILS-GEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRDNA- 449 (709)
Q Consensus 372 ~~~~~~~~~~l~~g~~~v~~-g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~~~~~~~~~- 449 (709)
++..+..+.+.++.+...+. |++|....+.++.+...++.|++.++..++.-+.+.++.+.++.+++.+++..+....
T Consensus 232 ffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~ 311 (559)
T COG4988 232 FFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKA 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccc
Confidence 66666666666665566666 8999999999999999999999999999999999999999999999987764433221
Q ss_pred CCCCCCCceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH
Q 005205 450 MPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE 529 (709)
Q Consensus 450 ~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~ 529 (709)
...+....+|+++|++|.||+++++++|+||+++||+++||||+||||||||+++|+||++|++|+|.+||+|+++++.+
T Consensus 312 ~~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~ 391 (559)
T COG4988 312 EVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPE 391 (559)
T ss_pred ccccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHH
Confidence 11122233566679999999877999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 005205 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 530 ~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
+||+++++|+|+|+||+|||||||++++|+++|||+++|++.+++.||+.. |+|+||++||+|.+|||||+||+++|||
T Consensus 392 ~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARA 470 (559)
T COG4988 392 AWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARA 470 (559)
T ss_pred HHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccHHHH
Q 005205 610 FLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQ 689 (709)
Q Consensus 610 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~ 689 (709)
|+++++++|||||||+||.|||+.|+++|.++.++||+|+||||++.+++||+|+|||+|+++|+|+|+||++++|.|++
T Consensus 471 ll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~ 550 (559)
T COG4988 471 LLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYAN 550 (559)
T ss_pred hcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhc
Q 005205 690 LWGQQNN 696 (709)
Q Consensus 690 l~~~q~~ 696 (709)
|+..|.+
T Consensus 551 l~~~q~~ 557 (559)
T COG4988 551 LLKQQEG 557 (559)
T ss_pred HHHHHhc
Confidence 9998865
No 21
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3e-93 Score=825.59 Aligned_cols=568 Identities=32% Similarity=0.443 Sum_probs=463.6
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 005205 106 KIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGY 185 (709)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (709)
+.+++++++++ +++..+++.+++.++..++.+..|++++.++|.+.... . ... ++.. +++.
T Consensus 5 ~~~~~l~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~---~-----~~~--~~~~----~~~~ 65 (588)
T PRK13657 5 RLYARVLQYLG-----AEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG---D-----IFP--LLAA----WAGF 65 (588)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---c-----HHH--HHHH----HHHH
Confidence 34555666664 45666677777777888899999999999999764311 0 010 0000 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005205 186 GIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (709)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (709)
.+. ..+..++..++..++..++...++.++|+|++++|+.+|++.++|++.+++++|.+.+...+...+..++..++
T Consensus 66 ~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~ 142 (588)
T PRK13657 66 GLF---NIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLV 142 (588)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11233444555556666777778889999999999999999999999999999888776554444444444433
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHH
Q 005205 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY 345 (709)
Q Consensus 266 ~~~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~ 345 (709)
..+ +..++++.++|.++++++++++++.++...+.+..++..++..+..++..+.+.|.+.|+++||.|+.++.+.++|
T Consensus 143 ~~~-~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~ 221 (588)
T PRK13657 143 ALV-VLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQAL 221 (588)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHH
Confidence 222 2223344566777776666655555555555555555566666677788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (709)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~ 425 (709)
.+..++..+...+..+..........++..+...+++++|++++.+|.+|+|+++++..++..+..|+..+...+..+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~ 301 (588)
T PRK13657 222 RDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFM 301 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887777666655555444444455566677899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHH
Q 005205 426 SLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLL 505 (709)
Q Consensus 426 ~~~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL 505 (709)
+..+++|+.++++.+++.++.....+.+...+.|+|+||+|+||+++++|+|+||+|+|||++||||+||||||||+++|
T Consensus 302 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL 381 (588)
T PRK13657 302 AAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLL 381 (588)
T ss_pred HHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999999887554322111111111235799999999998657899999999999999999999999999999999
Q ss_pred hcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCc
Q 005205 506 FRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKY 585 (709)
Q Consensus 506 ~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~ 585 (709)
+|+|+|++|+|++||+|+++++.+++|++|+||||||+||+|||+|||++++|+++|+|+++|++.++++++|.++|+|+
T Consensus 382 ~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gl 461 (588)
T PRK13657 382 QRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGY 461 (588)
T ss_pred hcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEE
Q 005205 586 STVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIV 665 (709)
Q Consensus 586 dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iiv 665 (709)
||.+||+|.+|||||||||+|||||+++|+|||||||||+||++||+.|.+.|+++.+++|+|+||||+++++.||+|++
T Consensus 462 dt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~ 541 (588)
T PRK13657 462 DTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILV 541 (588)
T ss_pred cchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred EeCCEEEEecChHHHhhcccHHHHHHHhhhc
Q 005205 666 LENGKVIEQGSHDDLLTKAGRYAQLWGQQNN 696 (709)
Q Consensus 666 l~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~ 696 (709)
|++|+++|.|+|+||+++++.|++++..|..
T Consensus 542 l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~ 572 (588)
T PRK13657 542 FDNGRVVESGSFDELVARGGRFAALLRAQGM 572 (588)
T ss_pred EECCEEEEeCCHHHHHHCCChHHHHHHHhhc
Confidence 9999999999999999999999999987743
No 22
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.8e-92 Score=816.50 Aligned_cols=566 Identities=30% Similarity=0.429 Sum_probs=471.0
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Q 005205 107 IFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYG 186 (709)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (709)
.+++++++++ ++++.+++.+++.++..++.+..|++++.++|.+.... . ....++. . ++..
T Consensus 6 ~~~~l~~~l~-----~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~--~-------~~~~~~~----~-~~~~ 66 (585)
T TIGR01192 6 VYVRALSYLN-----VHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKS--D-------VLPTLAL----W-AGFG 66 (585)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--c-------HHHHHHH----H-HHHH
Confidence 3556777775 56777777888888888999999999999999764311 0 0000100 0 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 005205 187 IARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILE 266 (709)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 266 (709)
+ +..+..+++.++..++..++..++|.++|+|++++|++||+++++|++.+++++|.+.+..++...+..++..++.
T Consensus 67 ~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~ 143 (585)
T TIGR01192 67 V---FNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVA 143 (585)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1223445556666677777778888899999999999999999999999999999888877665555555544443
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHH
Q 005205 267 ISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYD 346 (709)
Q Consensus 267 ~~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~ 346 (709)
++++ +++++.++|.+++++++.+++++++...+.+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|+
T Consensus 144 ~~~~-~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~ 222 (585)
T TIGR01192 144 LFLL-IPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALK 222 (585)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHH
Confidence 3222 233455678888877766666666555555555555666666777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 347 EFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQS 426 (709)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~ 426 (709)
+..+++.+...+..+..+.......++..+..++++++|++++.+|.+|+|+++++..++..+..|+..+...+..++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~ 302 (585)
T TIGR01192 223 QFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEA 302 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888777766665555555444444555666778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHh
Q 005205 427 LVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (709)
Q Consensus 427 ~~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~ 506 (709)
..+++|+.++++.+++..+.....+.+...+.|+|+||+|+|++++++|+|+||+|++||++|||||||||||||+++|+
T Consensus 303 ~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~ 382 (585)
T TIGR01192 303 RAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQ 382 (585)
T ss_pred HHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 99999999999876543221111111112357999999999986668999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCcc
Q 005205 507 RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYS 586 (709)
Q Consensus 507 rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~d 586 (709)
|+|+|++|+|++||+|+++++.+++|++++||||||++|++||+|||++++|+++++++++|++.+++++++.++|+|||
T Consensus 383 g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~ 462 (585)
T TIGR01192 383 RVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYD 462 (585)
T ss_pred cCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEE
Q 005205 587 TVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVL 666 (709)
Q Consensus 587 T~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl 666 (709)
|.+||+|.+|||||||||+|||||+++|+|||||||||+||++||+.|.+.|+++.+++|+|+||||+++++.||+|++|
T Consensus 463 t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l 542 (585)
T TIGR01192 463 TLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFL 542 (585)
T ss_pred chhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred eCCEEEEecChHHHhhcccHHHHHHHhhh
Q 005205 667 ENGKVIEQGSHDDLLTKAGRYAQLWGQQN 695 (709)
Q Consensus 667 ~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 695 (709)
++|+++|.|+|+||++++|.|+++|..|.
T Consensus 543 ~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 571 (585)
T TIGR01192 543 DQGRLIEKGSFQELIQKDGRFYKLLRRSG 571 (585)
T ss_pred ECCEEEEECCHHHHHHCCChHHHHHHhCc
Confidence 99999999999999999999999999884
No 23
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.1e-92 Score=817.10 Aligned_cols=557 Identities=30% Similarity=0.461 Sum_probs=474.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 122 EFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTA 201 (709)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (709)
++++.+++++++.++..++.+..|++++.++|....... . ..+..+ ...++++. ++..++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~------~~~~~~----~~~~~~~~---i~~~~~~~~~~~ 76 (571)
T TIGR02203 11 PYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD-R------SVLWWV----PLVVIGLA---VLRGICSFVSTY 76 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-h------hHHHHH----HHHHHHHH---HHHHHHHHHHHH
Confidence 456667777778888888899999999999997653211 0 111111 11111111 123456778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005205 202 VFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAP 281 (709)
Q Consensus 202 ~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (709)
+..+.+.++...+|..+|+|+.+.|.++|++.++|++.+++++|.+.+..++...+..++..++.+++.+ ++++.++|.
T Consensus 77 ~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~ 155 (571)
T TIGR02203 77 LLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLF-IVLLYYSWQ 155 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHH
Confidence 9999999999999999999999999999999999999999999988888776655555555444433333 334456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 282 FAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQR 361 (709)
Q Consensus 282 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~ 361 (709)
++++.++.+++.+++.....+..++..++..+..++..+.+.|.++|+++||+++.|+.+.++|++..+++.+...+..+
T Consensus 156 l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (571)
T TIGR02203 156 LTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTS 235 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666666666666666666677777888899999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 005205 362 SLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKA 441 (709)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~ 441 (709)
..+....+..++..+..++++++|++.+.+|.+|+|+++++..++..+..|+..+...+..++++..+.+|+.++++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 315 (571)
T TIGR02203 236 AGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPP 315 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77666666555555566667778999999999999999999999999999999999999999999999999999998765
Q ss_pred cccCCCCCCCCCCCCceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 005205 442 DIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (709)
Q Consensus 442 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG 520 (709)
+...... +.....++|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 316 ~~~~~~~--~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g 393 (571)
T TIGR02203 316 EKDTGTR--AIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG 393 (571)
T ss_pred CCCCCCC--CCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC
Confidence 4322211 11122357999999999975 46899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCC-CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChH
Q 005205 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599 (709)
Q Consensus 521 ~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~-~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 599 (709)
+|+++++.+++|++|+||||+|+||+|||+|||++++| +++++++++|++.+++++++.+||+||||+|||+|.+||||
T Consensus 394 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 394 HDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred EeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 99999999999999999999999999999999999987 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHH
Q 005205 600 EKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDD 679 (709)
Q Consensus 600 QrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~e 679 (709)
|||||+||||++++|||||||||||+||++||+.|.+.|++..++||+|+||||++.++.||+|++|++|+++|.|+|+|
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HhhcccHHHHHHHhhh
Q 005205 680 LLTKAGRYAQLWGQQN 695 (709)
Q Consensus 680 Ll~~~g~Y~~l~~~q~ 695 (709)
|++.++.|+++++.|.
T Consensus 554 l~~~~~~~~~~~~~~~ 569 (571)
T TIGR02203 554 LLARNGLYAQLHNMQF 569 (571)
T ss_pred HHHcCCHHHHHHHHhh
Confidence 9999999999988763
No 24
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=7.4e-93 Score=813.02 Aligned_cols=524 Identities=24% Similarity=0.301 Sum_probs=430.5
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 005205 110 TLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIAR 189 (709)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 189 (709)
+++++++ ++++.+++.+++.++.+++.+..|+++++++|.+.... .. .... . .+..++++.
T Consensus 3 ~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~-----~~~~---~-~~~~~~~~~--- 63 (529)
T TIGR02868 3 RILPLLQ-----PRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMP--PV-----LYLS---V-AAVAVRAFG--- 63 (529)
T ss_pred hHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hh-----HHHH---H-HHHHHHHHH---
Confidence 3455554 45666677777778888899999999999999764211 00 0000 0 011111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 190 TTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISM 269 (709)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 269 (709)
++..++.+++.++..+++.++..++|.++|+|++++|..||++.++|++.+++++|.+.++..+...+..++..++.+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~ 143 (529)
T TIGR02868 64 IGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSA 143 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345677888888899999999999999999999999999999999999999999998887766555544444433322
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHH
Q 005205 270 VSGILAYKFGAPFAWITSLSVVAYVVFTLSVT-QWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEF 348 (709)
Q Consensus 270 ~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~ 348 (709)
..++++.++|.+++++++.+++++++...+. +..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++.
T Consensus 144 -~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~ 222 (529)
T TIGR02868 144 -AVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAA 222 (529)
T ss_pred -HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHH
Confidence 2234455677777766655555444433333 33344445556677788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 349 LRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLV 428 (709)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~ 428 (709)
.+++.+...+..+..+.......++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+...+..++++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (529)
T TIGR02868 223 DRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRA 302 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888777776666555555556666677899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCC--CCCCCCCceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHh
Q 005205 429 DMKSMFQLLEEKADIQDRDNA--MPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (709)
Q Consensus 429 s~~rl~~~l~~~~~~~~~~~~--~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~ 506 (709)
+.+|+.++++.+++.++...+ .+.++..+.|+|+||+|+|++++++|+|+||+|+|||++|||||||||||||++||+
T Consensus 303 ~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 303 AAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred HHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 999999999876543221111 111112357999999999987678999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCcc
Q 005205 507 RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYS 586 (709)
Q Consensus 507 rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~d 586 (709)
|+|+|++|+|++||+|++++ .+++|++|+||||||+||+|||+|||++|+|+++|||+++||+.|+++|||++||+|||
T Consensus 383 g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~Gld 461 (529)
T TIGR02868 383 GLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLD 461 (529)
T ss_pred cCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCccccc
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCc
Q 005205 587 TVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRL 654 (709)
Q Consensus 587 T~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRl 654 (709)
|+|||+|.+||||||||||||||+++|||||||||||||||++||+.|+++|+++.+++|+|+||||+
T Consensus 462 T~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 462 TVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred chhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999998999999999996
No 25
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=8.4e-92 Score=809.35 Aligned_cols=547 Identities=25% Similarity=0.371 Sum_probs=453.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 135 VAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKVALRTIRSV 214 (709)
Q Consensus 135 ~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 214 (709)
++..++.+..|++++.++|.+....... ..... + ++++++.. ++..++.+++.++..+++.++..++
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~------~~~~~--~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l 71 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTT------GQILM--W--IGTMVLIA---VVVYLLRYVWRVLLFGASYQLAVEL 71 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcch------hHHHH--H--HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677789999999999764211010 00110 0 01111111 1223556777888888999999999
Q ss_pred HHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 005205 215 SRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAYV 294 (709)
Q Consensus 215 r~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~i~~~~~~~~~ 294 (709)
|.++|+|++++|+.+|+++++|++.+++++|.+.+.......+..++..++..++.++++++.++|.+++++++++++++
T Consensus 72 r~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~ 151 (569)
T PRK10789 72 REDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMA 151 (569)
T ss_pred HHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888765544444444433322222222333567777777666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 295 VFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIF 374 (709)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (709)
++.....+...+..++.++..++..+.+.|.+.|+++||+|+.|+.+.++|++..+++.+...+..+..+..........
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (569)
T PRK10789 152 IMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAI 231 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554555555555556667778889999999999999999999999999999999888888877776665555444444
Q ss_pred HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCC
Q 005205 375 SAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNL 454 (709)
Q Consensus 375 ~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~~~~~~~~~~~~~~ 454 (709)
.....+++++|++++.+|.+|+|+++++..|...+..|+..++..+..++++..+.+|+.++++.+++.++... +.+.
T Consensus 232 ~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~--~~~~ 309 (569)
T PRK10789 232 GMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE--PVPE 309 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC--CCCC
Confidence 44555566788999999999999999999999999999999999999999999999999999987654322111 1112
Q ss_pred CCceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhc
Q 005205 455 KGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533 (709)
Q Consensus 455 ~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~ 533 (709)
..+.|+|+||+|+|++ ++++|+|+||+|+||+++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|+
T Consensus 310 ~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 389 (569)
T PRK10789 310 GRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389 (569)
T ss_pred CCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHh
Confidence 2357999999999985 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 534 ~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
+|+||||+|+||++||+|||++++|+++++++++|++.+++++++.++|+||||.+||+|.+|||||||||+||||++++
T Consensus 390 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~ 469 (569)
T PRK10789 390 RLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN 469 (569)
T ss_pred heEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHHHHh
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQ 693 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~ 693 (709)
|+|||||||||+||+++|+.|.+.|+++.+++|+|+||||+++++.||+|++|++|+|+|.|+|+||++++|.|+++|..
T Consensus 470 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 549 (569)
T PRK10789 470 AEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRY 549 (569)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999997
Q ss_pred hhc
Q 005205 694 QNN 696 (709)
Q Consensus 694 q~~ 696 (709)
|..
T Consensus 550 ~~~ 552 (569)
T PRK10789 550 QQL 552 (569)
T ss_pred hhh
Confidence 744
No 26
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.2e-90 Score=803.01 Aligned_cols=567 Identities=30% Similarity=0.464 Sum_probs=467.3
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 005205 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (709)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (709)
++.++++++ .+++.+.+.+++.++..++.+..|++++.++|.+..... . ..+..++. +++++.+
T Consensus 6 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~------~~~~~~~~----~~~~~~~ 69 (576)
T TIGR02204 6 LAALWPFVR-----PYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS-S------GLLNRYFA----FLLVVAL 69 (576)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc-H------HHHHHHHH----HHHHHHH
Confidence 455666665 445666677777778888999999999999997542211 0 01111111 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005205 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (709)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (709)
+...+.+++.++..+++.++..++|.++|+|++++|..+|++.++|++.+++++|.+.+..++...+..++..++.+
T Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~ 146 (576)
T TIGR02204 70 ---VLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMC 146 (576)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22345667888889999999999999999999999999999999999999999898888777655444444444333
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHH
Q 005205 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (709)
Q Consensus 268 ~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~ 347 (709)
++ ..++++.++|.+++++++.+++.+++.....+..++..+...+..++..+.+.|.++|+++||+++.|+.+.++|++
T Consensus 147 ~~-~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~ 225 (576)
T TIGR02204 147 IG-GLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGG 225 (576)
T ss_pred HH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHH
Confidence 22 22334455677777666655555444444555555556666677778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSL 427 (709)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~ 427 (709)
..+++.+...+..+...........+.....++++++|++.+.+|.+|+|+++++..+...+..|+..+...+.+++++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~ 305 (576)
T TIGR02204 226 AVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAA 305 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877766665555544444444444455566778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCC-CCCCCCceEEEEeEEEEecCC--cccceeeeeEeeCCcEEEEEcCCCccHHHHHHH
Q 005205 428 VDMKSMFQLLEEKADIQDRDNAM-PLNLKGGSIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRL 504 (709)
Q Consensus 428 ~s~~rl~~~l~~~~~~~~~~~~~-~~~~~~g~I~f~nVsF~Y~~~--~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~L 504 (709)
.+++|+.++++.+++.+...... ...+..+.|+|+||+|+||++ +++|+|+||+|+|||++||||+||||||||+++
T Consensus 306 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlkl 385 (576)
T TIGR02204 306 GAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQL 385 (576)
T ss_pred HHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHH
Confidence 99999999998765422211111 111123579999999999842 689999999999999999999999999999999
Q ss_pred HhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCC
Q 005205 505 LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK 584 (709)
Q Consensus 505 L~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G 584 (709)
|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|+|||+|||++++|++++++++++++.++++++++++|+|
T Consensus 386 L~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~g 465 (576)
T TIGR02204 386 LLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEG 465 (576)
T ss_pred HHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEE
Q 005205 585 YSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEII 664 (709)
Q Consensus 585 ~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Ii 664 (709)
+||++||+|.+|||||||||+||||++++|+|||||||||+||++||+.|.+.|+++.+++|+|+||||++.++.||+|+
T Consensus 466 l~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi 545 (576)
T TIGR02204 466 YDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIV 545 (576)
T ss_pred CCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred EEeCCEEEEecChHHHhhcccHHHHHHHhh
Q 005205 665 VLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 694 (709)
Q Consensus 665 vl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q 694 (709)
+|++|+++|.|+|+||+++++.|++|++.|
T Consensus 546 ~l~~g~~~~~g~~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 546 VMDQGRIVAQGTHAELIAKGGLYARLARLQ 575 (576)
T ss_pred EEECCEEEeeecHHHHHHcCChHHHHHhhc
Confidence 999999999999999999999999999876
No 27
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.9e-91 Score=874.64 Aligned_cols=495 Identities=21% Similarity=0.279 Sum_probs=406.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 194 AFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGI 273 (709)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 273 (709)
++.+++.+++...+.+...++|.++|++++++|++||+++++|++.+|+++|.+.++..+...+..++..++.++..+++
T Consensus 1020 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~ 1099 (1522)
T TIGR00957 1020 FAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIV 1099 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888899999999999999999999999999999999999999999999888776666666555444333322
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHH
Q 005205 274 LAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYE 353 (709)
Q Consensus 274 l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~ 353 (709)
+ +..+|.+.++++..++++.++...+.+..+...+...+..+.+.+.+.|+++|+++||+|++|+++.+++.+..+...
T Consensus 1100 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~ 1178 (1522)
T TIGR00957 1100 I-LLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQ 1178 (1522)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 2 333443322222222222222222222223333334445567789999999999999999999999999888777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 354 DAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGIL-SGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKS 432 (709)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~-~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~r 432 (709)
+..........+......++. ..++++++++.+. .|.+++|.+.+++.|+..+..|+..+...+.++++++.+++|
T Consensus 1179 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eR 1255 (1522)
T TIGR00957 1179 KAYYPSIVANRWLAVRLECVG---NCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVER 1255 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665444333333333332221 1222333444444 588999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccC---CCCCCCCCCCCceEEEEeEEEEecCC-cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC
Q 005205 433 MFQLLEEKADIQD---RDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 433 l~~~l~~~~~~~~---~~~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+.++++.+++... ...+.+.++..|.|+|+||+|+|+++ ++||+|+||+|+|||++||||+||||||||+++|+|+
T Consensus 1256 i~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl 1335 (1522)
T TIGR00957 1256 LKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI 1335 (1522)
T ss_pred HHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 9999987655321 11111123445789999999999854 5899999999999999999999999999999999999
Q ss_pred CCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCcccc
Q 005205 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTV 588 (709)
Q Consensus 509 y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~ 588 (709)
|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||.+.. +++|||+++|++.|+++|||.++|+||||+
T Consensus 1336 ~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~ 1414 (1522)
T TIGR00957 1336 NESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHE 1414 (1522)
T ss_pred ccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCce
Confidence 9999999999999999999999999999999999999999999998544 689999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeC
Q 005205 589 VGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLEN 668 (709)
Q Consensus 589 vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~ 668 (709)
|||+|.+|||||||||||||||+++|+||||||||||||++||+.|+++|++..++||+|+||||++|+++||||+|||+
T Consensus 1415 v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1415 CAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDK 1494 (1522)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecChHHHhhcccHHHHHHHh
Q 005205 669 GKVIEQGSHDDLLTKAGRYAQLWGQ 693 (709)
Q Consensus 669 G~Ive~Gth~eLl~~~g~Y~~l~~~ 693 (709)
|+|+|.|+|+||++++|.|++|++.
T Consensus 1495 G~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1495 GEVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred CEEEEECCHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999999975
No 28
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.5e-90 Score=867.16 Aligned_cols=506 Identities=21% Similarity=0.293 Sum_probs=390.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 193 SAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSG 272 (709)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 272 (709)
.++.+++.+++...+.+...++|.++|++++++|+.||+++++|++.+|+++|.+.++..+...+..++..++.++..++
T Consensus 967 ~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i 1046 (1622)
T PLN03130 967 VLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFV 1046 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888999999999999999999999999999999999999999999999988776666666665554433333
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHH
Q 005205 273 ILAYKFGAPFAWITSLSVVAYVVF-TLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRR 351 (709)
Q Consensus 273 ~l~~~~~~~l~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~ 351 (709)
++.+ +++ +.+++++++++.+.+ ...+.+..+...+......+...+.+.|+++|+++||+|+.++++.+++.+..+.
T Consensus 1047 ~i~~-~~~-~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~ 1124 (1622)
T PLN03130 1047 LIGI-VST-ISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDN 1124 (1622)
T ss_pred HHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHH
Confidence 2222 233 222222221111111 1111122222222233344567788999999999999999998776666554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCC-cC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 352 YEDAALKTQRSLAFLNFGQNVIFSAALSTAMV-LCSHGILSGE-MT-----VGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (709)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~~v~~g~-lt-----vG~l~a~~~~~~~l~~pl~~l~~~~~~l~ 424 (709)
.. +.....................++++ .+.+.+..+. .+ .+.+..++++...+..++..+...+..++
T Consensus 1125 ~~----~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e 1200 (1622)
T PLN03130 1125 NI----RFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAE 1200 (1622)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 22222111111111111111111222 2333344332 11 23333444466677778888888888999
Q ss_pred HHHHHHHHHHHHhcccccccCC---CCCCCCCCCCceEEEEeEEEEecCC-cccceeeeeEeeCCcEEEEEcCCCccHHH
Q 005205 425 QSLVDMKSMFQLLEEKADIQDR---DNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKST 500 (709)
Q Consensus 425 ~~~~s~~rl~~~l~~~~~~~~~---~~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKST 500 (709)
+++.+++|+.++++.+++.+.. ..+.+.++..|.|+|+||+|+|+++ ++||+|+||+|+|||+|||||+|||||||
T Consensus 1201 ~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKST 1280 (1622)
T PLN03130 1201 NSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSS 1280 (1622)
T ss_pred HHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHH
Confidence 9999999999999876653221 1112223445789999999999754 58999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHh
Q 005205 501 ILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMN 580 (709)
Q Consensus 501 L~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~ 580 (709)
|+++|+|+|+|++|+|+|||+|+++++++++|++|++|||||+||+|||||||.+++ +++|+|+++||+.|+++|||++
T Consensus 1281 Ll~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~ 1359 (1622)
T PLN03130 1281 MLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRR 1359 (1622)
T ss_pred HHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999997 5899999999999999999999
Q ss_pred CCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhc
Q 005205 581 FPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQC 660 (709)
Q Consensus 581 Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~a 660 (709)
||+||||+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++..++||+|+||||++|+++|
T Consensus 1360 lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~ 1439 (1622)
T PLN03130 1360 NSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1439 (1622)
T ss_pred CccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCEEEEecChHHHhhc-ccHHHHHHHhhhc-chhHHHHHH
Q 005205 661 DEIIVLENGKVIEQGSHDDLLTK-AGRYAQLWGQQNN-TADAIDAAV 705 (709)
Q Consensus 661 D~Iivl~~G~Ive~Gth~eLl~~-~g~Y~~l~~~q~~-~~~~~~~~~ 705 (709)
|||+|||+|+|+|.|+|+||+++ +|.|++|++.+.. .++.+.+.|
T Consensus 1440 DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~~~~~~l~~~a 1486 (1622)
T PLN03130 1440 DRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAANAQYLRSLV 1486 (1622)
T ss_pred CEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcChhhhHHHHHHH
Confidence 99999999999999999999987 6999999987633 344555444
No 29
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-90 Score=737.77 Aligned_cols=555 Identities=24% Similarity=0.374 Sum_probs=443.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (709)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (709)
|+.+.+++++.++..+.++..-.+.+|+|-.-... +. .... -+..+.+.+-++++.|.+. .|......
T Consensus 15 ~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAia-g~-------~~~f-~~~~p~a~VR~~aI~Rt~~---RY~ERlvs 82 (573)
T COG4987 15 KFGLLLGIVLAILTLLASIGLLTLSGWFISASAIA-GL-------AYIF-NVMLPSAGVRGLAILRTAA---RYVERLVS 82 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc-cH-------HHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHhh
Confidence 45556666665555555555556777777532111 00 0111 1223455566677777544 45555677
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 005205 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (709)
Q Consensus 204 ~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 283 (709)
+....++..++|.++|+++..+++.-..+.++||+.+|+..|++.++.++-..+.-.+..++.+.++ .+..-+++|+++
T Consensus 83 H~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~-~i~L~f~~~~~A 161 (573)
T COG4987 83 HDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVV-TIGLSFFSIPLA 161 (573)
T ss_pred hHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHH-HHHHHHhhHHHH
Confidence 7899999999999999999999999999999999999999999998877543332222222212111 222224567666
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 284 WITSLSVVA-YVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRS 362 (709)
Q Consensus 284 ~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 362 (709)
+.+.+.+.+ .+++.....+..++..++..+..+.+.+.+.|.+.|....+.||.++.+.+.+.+..+.+.+...+.++.
T Consensus 162 lll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~ 241 (573)
T COG4987 162 LLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARF 241 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654443333 3333344455566777777778888889999999999999999999999999999998888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccc
Q 005205 363 LAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLG-SVYRETVQSLVDMKSMFQLLEEKA 441 (709)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~-~~~~~l~~~~~s~~rl~~~l~~~~ 441 (709)
..+......++....++..+++.+..+-.|..+.-...++....+....++..+. ..+.++.+...|++|+.+++++++
T Consensus 242 ~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~ 321 (573)
T COG4987 242 TGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKP 321 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCc
Confidence 7777766655544444433444444455677765444444444455666666666 777899999999999999999988
Q ss_pred cccCCCCCCCCCCCCceEEEEeEEEEecCC-cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 005205 442 DIQDRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (709)
Q Consensus 442 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG 520 (709)
+...+..+.+ ..+..++++||||+||+. .++|+|+||++++||+|||+|+||||||||++||.|.|+|++|+|.++|
T Consensus 322 e~~~~~~~~~--~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g 399 (573)
T COG4987 322 EVTFPDEQTA--TTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG 399 (573)
T ss_pred ccCCCccccC--CccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECC
Confidence 7654411111 112279999999999964 4899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHH
Q 005205 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (709)
Q Consensus 521 ~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 600 (709)
.|++.++.+.+|+.|++++|.++||++|+|||+++++|++||||+|+|++++|+++++++.|+||+|.+||+|.+|||||
T Consensus 400 ~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE 479 (573)
T COG4987 400 VEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGE 479 (573)
T ss_pred cChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHH
Q 005205 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDL 680 (709)
Q Consensus 601 rQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eL 680 (709)
|||+||||+|++|.|++||||||.+||++||++|++.|.+..+|||+|+||||+.-++.||||+|||+|+|+|+|+|+||
T Consensus 480 ~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~L 559 (573)
T COG4987 480 RRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAEL 559 (573)
T ss_pred HHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHh
Q 005205 681 LTKAGRYAQLWGQ 693 (709)
Q Consensus 681 l~~~g~Y~~l~~~ 693 (709)
++++|.|+++++.
T Consensus 560 l~~~g~~~~l~q~ 572 (573)
T COG4987 560 LANNGRYKRLYQL 572 (573)
T ss_pred hccccHHHHHhcc
Confidence 9999999999863
No 30
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.1e-88 Score=778.55 Aligned_cols=526 Identities=25% Similarity=0.353 Sum_probs=430.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 125 LRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFS 204 (709)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (709)
+.+.+++++.++.+++.+..|+++++++|.+....... ..+... +..+++.. ++...+.+++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~------~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~ 69 (529)
T TIGR02857 3 RALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPL------AELLPA----LGALALAV---LLRALLGWLGERAAA 69 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCh------HHHHHH----HHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34556666777788899999999999999874111110 011111 11111111 123456788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 005205 205 KVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAW 284 (709)
Q Consensus 205 ~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 284 (709)
+++.++..++|.++|+|++++|..+|+++++|++.+++++|.+.++.++...+..++..++.+++ ..++++.++|.+++
T Consensus 70 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~ 148 (529)
T TIGR02857 70 RAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLA-ILAAVFPADWISGL 148 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999998887765544444443332222 22334456777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 285 ITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLA 364 (709)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (709)
++++.+++.+++.....+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+...
T Consensus 149 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (529)
T TIGR02857 149 ILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAF 228 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555544444444444445555666777888999999999999999999999999999999988888777766665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 005205 365 FLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQ 444 (709)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~~~~ 444 (709)
.......++..+...++++++++.+.+|.+|+|.++++..+...+..|+..+...+..++++..+++|+.++++.+++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~ 308 (529)
T TIGR02857 229 LSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA 308 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 55555444444444444456667777999999999999999999999999999999999999999999999998543221
Q ss_pred CCCCCCCCCCCCceEEEEeEEEEecCC-cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeC
Q 005205 445 DRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI 523 (709)
Q Consensus 445 ~~~~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di 523 (709)
+. .+.+ ....+.|+|+||+|+||+. +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+
T Consensus 309 ~~-~~~~-~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i 386 (529)
T TIGR02857 309 GK-APVT-AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPL 386 (529)
T ss_pred CC-cCCC-CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeh
Confidence 11 1111 1123579999999999864 4899999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 524 CEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 524 ~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
++++.+++|++|+||||||++|++||+|||++++|+++|+++++|++.+++++||+++|+||||++||+|.+||||||||
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qr 466 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQR 466 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEE
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVL 666 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl 666 (709)
|+||||+++||+|||||||||+||++||+.|+++|+++.+++|+|+||||+++++.||+|+||
T Consensus 467 i~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 467 LALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999999999998899999999999999999999986
No 31
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.5e-89 Score=853.03 Aligned_cols=505 Identities=20% Similarity=0.309 Sum_probs=392.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 193 SAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSG 272 (709)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 272 (709)
.++.+++.+++...+.+...++|.++|++++++|+.||+++++|++.+|+++|.+.++..+...+..++..++.++..++
T Consensus 964 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i 1043 (1495)
T PLN03232 964 VAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFA 1043 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888999999999999999999999999999999999999999999999988776655555554443332222
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHH
Q 005205 273 ILAYKFGAPFAWITSLSVVAYVVFTLSVT-QWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRR 351 (709)
Q Consensus 273 ~l~~~~~~~l~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~ 351 (709)
++.+ +.+ +.+++++++++...+..... +..+...+......+...+.+.|+++|+++||+|+.++++.+++++..+.
T Consensus 1044 ~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~ 1121 (1495)
T PLN03232 1044 LIGT-VST-ISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDN 1121 (1495)
T ss_pred HHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHH
Confidence 2222 222 12222221111111111111 22222333334455667788999999999999999998877766665444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 352 YEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGIL-SGEM----T-VGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (709)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~-~g~l----t-vG~l~a~~~~~~~l~~pl~~l~~~~~~l~~ 425 (709)
..+..........+...... .....++++.+.+.+. .|.+ + .+.+..++.++..+..|+..+...+.+++.
T Consensus 1122 ~~~~~~~~~~~~~wl~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~ 1198 (1495)
T PLN03232 1122 NIRFTLANTSSNRWLTIRLE---TLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAEN 1198 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332221111111111111 1111111222333443 2332 1 233344677888899999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCC--C-CCCCCCCCCceEEEEeEEEEecCC-cccceeeeeEeeCCcEEEEEcCCCccHHHH
Q 005205 426 SLVDMKSMFQLLEEKADIQDR--D-NAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTI 501 (709)
Q Consensus 426 ~~~s~~rl~~~l~~~~~~~~~--~-~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL 501 (709)
++.+++|+.++++.+++.+.. . .+.+.++..|.|+|+||+|+|+++ ++||+|+||+|+|||+|||||+||||||||
T Consensus 1199 ~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL 1278 (1495)
T PLN03232 1199 SLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSM 1278 (1495)
T ss_pred HHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHH
Confidence 999999999999876654321 1 111223345789999999999754 689999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhC
Q 005205 502 LRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNF 581 (709)
Q Consensus 502 ~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~L 581 (709)
+++|+|+|+|++|+|+|||+|++++++++||++|++|||||+||+|||||||++++ +++|+|+++|++.|+++|||+++
T Consensus 1279 ~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~l 1357 (1495)
T PLN03232 1279 LNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRN 1357 (1495)
T ss_pred HHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999987 69999999999999999999999
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcC
Q 005205 582 PAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCD 661 (709)
Q Consensus 582 p~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD 661 (709)
|+||||+|||+|.+|||||||||||||||+++|+||||||||||||++||+.|+++|++..++||+|+||||++|+++||
T Consensus 1358 p~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~D 1437 (1495)
T PLN03232 1358 PFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCD 1437 (1495)
T ss_pred cCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCEEEEecChHHHhhcc-cHHHHHHHhhhcc-hhHHHH
Q 005205 662 EIIVLENGKVIEQGSHDDLLTKA-GRYAQLWGQQNNT-ADAIDA 703 (709)
Q Consensus 662 ~Iivl~~G~Ive~Gth~eLl~~~-g~Y~~l~~~q~~~-~~~~~~ 703 (709)
+|+|||+|+|+|.|+|+||++++ |.|++|++.+... ++.+++
T Consensus 1438 rIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~~~~~~~~~ 1481 (1495)
T PLN03232 1438 KILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPANAQYLSN 1481 (1495)
T ss_pred EEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChhhhHHHHH
Confidence 99999999999999999999886 5999999887432 334443
No 32
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.9e-88 Score=847.19 Aligned_cols=494 Identities=21% Similarity=0.295 Sum_probs=397.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005205 199 RTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKF 278 (709)
Q Consensus 199 ~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (709)
+.+.....+.+..+++|.++|++++++|+.||+++++|++.+|+++|.+.++..+...+..++..++.++..+++ ++..
T Consensus 1018 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~-~~~~ 1096 (1560)
T PTZ00243 1018 RFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILV-TSAS 1096 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 334444555666789999999999999999999999999999999999999887766655555555444333222 2323
Q ss_pred hhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 005205 279 GAPFAWITSLSVV-AYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAAL 357 (709)
Q Consensus 279 ~~~l~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~ 357 (709)
+|.+ +++++++. ++..+...+.+..+..++......+.+.+.+.|++.|+++||+|+.|+.+.++|.+..+...+...
T Consensus 1097 ~p~~-~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~ 1175 (1560)
T PTZ00243 1097 QPFV-LVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSY 1175 (1560)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 3322 11111111 111111112222233333344556677899999999999999999999999999998888777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 358 KTQRSLAFLNFGQNVIFSAALSTAMVLCSHG--ILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQ 435 (709)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~--v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~ 435 (709)
+......+......++..+..+++.+++.+. ...+.+++|.+.+++++...+..|+..+...+.++++++.+++|+.+
T Consensus 1176 ~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~ 1255 (1560)
T PTZ00243 1176 LENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLY 1255 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444444333333333322333333333 23456899999999999999999999999999999999999999999
Q ss_pred Hhccccccc-C--------------------------CCCCC---CCCCCCceEEEEeEEEEecCC-cccceeeeeEeeC
Q 005205 436 LLEEKADIQ-D--------------------------RDNAM---PLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPA 484 (709)
Q Consensus 436 ~l~~~~~~~-~--------------------------~~~~~---~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~ 484 (709)
+++..++.+ . +..+. +.++..|.|+|+||+|+|+++ ++||+||||+|+|
T Consensus 1256 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~ 1335 (1560)
T PTZ00243 1256 YTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAP 1335 (1560)
T ss_pred HHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECC
Confidence 986432211 0 00000 112234689999999999865 4699999999999
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHH
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEE 564 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~e 564 (709)
||+|||||+||||||||+++|+|+|+|++|+|+|||+|++++++++||++|+||||||+||+|||||||.+++ +++|+|
T Consensus 1336 GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-~~sdee 1414 (1560)
T PTZ00243 1336 REKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-EASSAE 1414 (1560)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-CCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998875 689999
Q ss_pred HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC
Q 005205 565 VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA-PPILLCDEATSALDSTTEAEILNALKSLAN 643 (709)
Q Consensus 565 i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~-p~ILILDEaTSaLD~~tE~~I~~~L~~l~~ 643 (709)
+++||+.|+++|||.+||+||||.|||+|.+|||||||||||||||+++ |+||||||||||||++||+.|+++|++..+
T Consensus 1415 I~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~ 1494 (1560)
T PTZ00243 1415 VWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS 1494 (1560)
T ss_pred HHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999996 899999999999999999999999999999
Q ss_pred CCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhc-ccHHHHHHHhhh
Q 005205 644 NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK-AGRYAQLWGQQN 695 (709)
Q Consensus 644 ~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~-~g~Y~~l~~~q~ 695 (709)
+||+|+||||++|+++||+|+|||+|+|+|.|+|+||+++ +|.|++|++.+.
T Consensus 1495 ~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1495 AYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred CCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 9999999999999999999999999999999999999985 899999998774
No 33
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.5e-87 Score=769.04 Aligned_cols=537 Identities=25% Similarity=0.326 Sum_probs=438.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 123 FRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAV 202 (709)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (709)
+++.++..+++.++..++.++.|++++.++|.+..... . ..+..+. + ++++ ..++..++.+++.++
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~-~------~~l~~~~---~-~~~~---~~~~~~~~~~~~~~~ 69 (544)
T TIGR01842 4 NKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS-V------PTLLMLT---V-LALG---LYLFLGLLDALRSFV 69 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-h------hHHHHHH---H-HHHH---HHHHHHHHHHHHHHH
Confidence 45566667777777888999999999999997753211 0 0111110 1 1111 112234667888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005205 203 FSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSS-MVFNVVPTILEISMVSGILAYKFGAP 281 (709)
Q Consensus 203 ~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (709)
..+++.++..++|.++|+|++++|+.. .++..+++.+|.+.++.++.. ....++..++.++ . .++++.++|.
T Consensus 70 ~~~~~~~~~~~lr~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~-~~~l~~~~~~ 142 (544)
T TIGR01842 70 LVRIGEKLDGALNQPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-Y-LLVCFLLHPW 142 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-H-HHHHHHHhhH
Confidence 999999999999999999999999842 244455666777777766543 2333333322222 2 2344556777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 282 FAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQR 361 (709)
Q Consensus 282 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~ 361 (709)
+++++++.+++++++.....+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+
T Consensus 143 l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 222 (544)
T TIGR01842 143 IGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASD 222 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655555444444444555555666677778888999999999999999999999999999999988888777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 005205 362 SLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKA 441 (709)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~ 441 (709)
..+.......++..+...+++++|++++.+|.+|+|+++++..++..+..|+..+...+..++++..+.+|+.++++.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 302 (544)
T TIGR01842 223 RAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYP 302 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 66555554444444455566678999999999999999999999999999999999999999999999999999998765
Q ss_pred cccCCCCCCCCCCCCceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 005205 442 DIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (709)
Q Consensus 442 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG 520 (709)
+..+. . +.+...+.|+++||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 303 ~~~~~-~--~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 379 (544)
T TIGR01842 303 SRDPA-M--PLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDG 379 (544)
T ss_pred cccCC-C--CCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 43221 1 11122357999999999985 46899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHH
Q 005205 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (709)
Q Consensus 521 ~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 600 (709)
+|+++++.+++|++++||||||++|++||+|||++++++++++++++|++.+++++++++||+||||.+||+|.+|||||
T Consensus 380 ~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq 459 (544)
T TIGR01842 380 ADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQ 459 (544)
T ss_pred EehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHH
Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHH
Q 005205 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDD 679 (709)
Q Consensus 601 rQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~e 679 (709)
||||+||||+++||+|||||||||+||+++|+.|.+.|+++. +++|+|+||||+++++.||+|++|++|+++|.|+|+|
T Consensus 460 ~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~ 539 (544)
T TIGR01842 460 RQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDE 539 (544)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHH
Confidence 999999999999999999999999999999999999999885 6899999999999999999999999999999999999
Q ss_pred Hhhc
Q 005205 680 LLTK 683 (709)
Q Consensus 680 Ll~~ 683 (709)
|+++
T Consensus 540 l~~~ 543 (544)
T TIGR01842 540 VLAK 543 (544)
T ss_pred Hhhc
Confidence 9864
No 34
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=9.9e-88 Score=834.57 Aligned_cols=565 Identities=25% Similarity=0.329 Sum_probs=468.9
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 005205 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (709)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (709)
+..+++|.- +.++..+++++++.++..++..+.|++++.++|.+... .. ...+.+ .++.+++
T Consensus 47 ~~~~~~~~~----~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~--~~------~~~~~~------~~~~~~i 108 (1466)
T PTZ00265 47 FFLPFKCLP----ASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG--EN------VNDIIF------SLVLIGI 108 (1466)
T ss_pred HHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ch------HHHHHH------HHHHHHH
Confidence 455666654 35566777777787778888888999999999976311 00 001010 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005205 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (709)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (709)
+..++.+++.+++.++++++.+++|.++|+|++++|+.||+++.+|++.++++.|.+.++..+...+..++..++.+
T Consensus 109 ---~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~ 185 (1466)
T PTZ00265 109 ---FQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAF 185 (1466)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22356788999999999999999999999999999999999999999999999998888877666555555555443
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHH
Q 005205 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (709)
Q Consensus 268 ~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~ 347 (709)
+ ...++++.++|.+++++++++|+++++...+.+..++..+..++..++.++.+.|.++|+++||+|+.|+.+.++|++
T Consensus 186 i-~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~ 264 (1466)
T PTZ00265 186 L-GLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNL 264 (1466)
T ss_pred H-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHH
Confidence 2 333455667899998888777777766666666666666666667778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSG--------EMTVGDLVMVNGLLFQLSLPLNFLGSV 419 (709)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g--------~ltvG~l~a~~~~~~~l~~pl~~l~~~ 419 (709)
..+.+.+...+.....+.......++..+..++++|+|++++.+| .+|+|+++++..+......++..+...
T Consensus 265 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~ 344 (1466)
T PTZ00265 265 SEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPN 344 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888887777766665555555666777888999999875 589999988776665555566667777
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecC--CcccceeeeeEeeCCcEEEEEcCCCcc
Q 005205 420 YRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSG 497 (709)
Q Consensus 420 ~~~l~~~~~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vaIVG~SGsG 497 (709)
+..++.+..+++|++++++.+++..+.......+ ..+.|+|+||+|+|++ +.++|+|+||+|+|||++|||||||||
T Consensus 345 ~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsG 423 (1466)
T PTZ00265 345 ITEYMKSLEATNSLYEIINRKPLVENNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCG 423 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCC
Confidence 8899999999999999999877543221111111 1247999999999984 347999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCEEEE-CCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCC------------------
Q 005205 498 KSTILRLLFRSFDTHSGSIRI-DGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL------------------ 558 (709)
Q Consensus 498 KSTL~~LL~rly~p~~G~I~i-dG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~------------------ 558 (709)
||||+++|+|+|+|++|+|++ ||+|+++++..++|++||||+|+|.||++||+|||++|.+
T Consensus 424 KSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~ 503 (1466)
T PTZ00265 424 KSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGND 503 (1466)
T ss_pred HHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccc
Confidence 999999999999999999999 6799999999999999999999999999999999999741
Q ss_pred ---------------------------------------CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChH
Q 005205 559 ---------------------------------------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599 (709)
Q Consensus 559 ---------------------------------------~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 599 (709)
+++++++++||+.+++++||.+||+||||.||++|.+||||
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGG 583 (1466)
T PTZ00265 504 SQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGG 583 (1466)
T ss_pred ccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHH
Confidence 35789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhhcCeEEEEeCC--------
Q 005205 600 EKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQCDEIIVLENG-------- 669 (709)
Q Consensus 600 QrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~aD~Iivl~~G-------- 669 (709)
|||||+|||||+++|+|||||||||+||+++|+.|++.|+++. +++|+|+||||+++++.||+|+||++|
T Consensus 584 QkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~ 663 (1466)
T PTZ00265 584 QKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDV 663 (1466)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccc
Confidence 9999999999999999999999999999999999999999986 489999999999999999999999986
Q ss_pred ---------------------------------------EEEEecChHHHhh-cccHHHHHHHhhh
Q 005205 670 ---------------------------------------KVIEQGSHDDLLT-KAGRYAQLWGQQN 695 (709)
Q Consensus 670 ---------------------------------------~Ive~Gth~eLl~-~~g~Y~~l~~~q~ 695 (709)
+|||+|||+||++ ++|.|+.|+..|.
T Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 664 DIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 5999999999998 7999999998874
No 35
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.4e-85 Score=779.43 Aligned_cols=495 Identities=24% Similarity=0.388 Sum_probs=404.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 191 TASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMV 270 (709)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 270 (709)
+..++..+|++.+...+.+..+.|++++++++++.|+.|||..++|.|.+|.+.|.+.++..+...+..++..++.++.+
T Consensus 870 ~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~ 949 (1381)
T KOG0054|consen 870 ASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGI 949 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34456678999999999999999999999999999999999999999999999999999888777766666666655544
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHH
Q 005205 271 SGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAM----NKADNDASTRAIDSLINYETVKYFNNEAFEAEQYD 346 (709)
Q Consensus 271 ~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~ 346 (709)
++++.+. .|++ +++++++ .++.+.+.++..+..++. ....+-..+.+.|++.|+.|||+|+.|+++.+++.
T Consensus 950 ~~vi~~~-~P~f---li~~~pl-~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~ 1024 (1381)
T KOG0054|consen 950 LVVISYV-TPWF---LIAIIPL-GVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQEND 1024 (1381)
T ss_pred HHHhhHH-hHHH---HHHHHHH-HHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHH
Confidence 4443332 2222 2222222 222222222222222222 22334466899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 347 EFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQS 426 (709)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~ 426 (709)
...+.+.+...-.....-++..-..++..+.+.++.++.. +...+.++.|.+...++|..++...++++.+...++...
T Consensus 1025 ~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~v-l~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~ 1103 (1381)
T KOG0054|consen 1025 ELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAV-LLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENN 1103 (1381)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9888877664443322222222223222222221111111 111222778999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccc---CCCCCCCCCCCCceEEEEeEEEEecCC-cccceeeeeEeeCCcEEEEEcCCCccHHHHH
Q 005205 427 LVDMKSMFQLLEEKADIQ---DRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTIL 502 (709)
Q Consensus 427 ~~s~~rl~~~l~~~~~~~---~~~~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~ 502 (709)
+.|+||+.++.+.++|.+ +...+++.||..|+|+|+|++.+|.++ ++|||||||+|+|||+|||||+||||||||+
T Consensus 1104 m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~ 1183 (1381)
T KOG0054|consen 1104 MVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLI 1183 (1381)
T ss_pred chhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHH
Confidence 999999999998665511 112245567888999999999999864 7899999999999999999999999999999
Q ss_pred HHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCC
Q 005205 503 RLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFP 582 (709)
Q Consensus 503 ~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp 582 (709)
+.|.|+.+|.+|+|.|||+||.++++++||++++++||||.||+||||.||...+ +.+|+|||+|+++|++.++|+++|
T Consensus 1184 ~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~-e~sD~~IW~ALe~~~Lk~~v~~~p 1262 (1381)
T KOG0054|consen 1184 LALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD-EYSDDEIWEALERCQLKDVVSSLP 1262 (1381)
T ss_pred HHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc-ccCHHHHHHHHHHhChHHHHhhCC
Confidence 9999999999999999999999999999999999999999999999999998876 589999999999999999999999
Q ss_pred CCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCe
Q 005205 583 AKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDE 662 (709)
Q Consensus 583 ~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~ 662 (709)
+|+|++|.|+|.|+|-||||.+||||||||+++||||||||+++|++|+..||++|++..++||||.||||++|+.+|||
T Consensus 1263 ~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~Dr 1342 (1381)
T KOG0054|consen 1263 GGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDR 1342 (1381)
T ss_pred cCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCEEEEecChHHHhhc-ccHHHHHHH
Q 005205 663 IIVLENGKVIEQGSHDDLLTK-AGRYAQLWG 692 (709)
Q Consensus 663 Iivl~~G~Ive~Gth~eLl~~-~g~Y~~l~~ 692 (709)
|+|||+|+|+|.|++++|+++ ++.|+++..
T Consensus 1343 VlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1343 VLVLDAGRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred EEEeeCCeEeecCChHHHHhCCcchHHHHHH
Confidence 999999999999999999976 677765543
No 36
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.9e-83 Score=802.02 Aligned_cols=495 Identities=21% Similarity=0.319 Sum_probs=394.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 194 AFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGI 273 (709)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 273 (709)
.+.+++.+++.+.+.+..+++|.++|+++++.|+.||++.++|++.+|+++|.+.++..+...+..++..++.++..+++
T Consensus 940 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~ 1019 (1490)
T TIGR01271 940 ALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFV 1019 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888999999999999999999999999999999999999999999999887766666655555444333322
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHH
Q 005205 274 LAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYE 353 (709)
Q Consensus 274 l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~ 353 (709)
+ +.++|.+.++++..+++++++...+.+..+...+......+.+.+.+.|++.|+.+||+|++|+.+.++|.+..+...
T Consensus 1020 i-~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~ 1098 (1490)
T TIGR01271 1020 V-SVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHT 1098 (1490)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 2 333443322211111111111112222223333333445566778999999999999999999999999999887654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 354 DAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSM 433 (709)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl 433 (709)
+..........+......++.......+.++ .+....++.|.+..+++|+..+..++..+...+.+++.++.+++|+
T Consensus 1099 ~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l---~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi 1175 (1490)
T TIGR01271 1099 ANWFLYLSTLRWFQMRIDIIFVFFFIAVTFI---AIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRV 1175 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433332222222222222221111111111 1112235666677777788888999999999999999999999999
Q ss_pred HHHhcccccccCCCC-----------------CCCCCCCCceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCC
Q 005205 434 FQLLEEKADIQDRDN-----------------AMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSG 495 (709)
Q Consensus 434 ~~~l~~~~~~~~~~~-----------------~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SG 495 (709)
.++++.+++...... +++.++..|.|+|+||+|+|++ .+++|+|+||+|+|||+|||||+||
T Consensus 1176 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSG 1255 (1490)
T TIGR01271 1176 FKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTG 1255 (1490)
T ss_pred HHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCC
Confidence 999976654321100 0112344578999999999985 4789999999999999999999999
Q ss_pred ccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchH
Q 005205 496 SGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIH 575 (709)
Q Consensus 496 sGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~ 575 (709)
||||||+++|+|+|+ ++|+|+|||+|+++++++++|++|+||||||+||+|||||||.+++ +++|+++|+|++.++++
T Consensus 1256 sGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~aL~~~~L~ 1333 (1490)
T TIGR01271 1256 SGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWKVAEEVGLK 1333 (1490)
T ss_pred CCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHHHHHHCCCH
Confidence 999999999999997 8999999999999999999999999999999999999999998765 58999999999999999
Q ss_pred HHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 005205 576 DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 655 (709)
Q Consensus 576 ~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRls 655 (709)
++|.++|+||||+|||+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++..++||+|+||||++
T Consensus 1334 ~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ 1413 (1490)
T TIGR01271 1334 SVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVE 1413 (1490)
T ss_pred HHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHHHHhh
Q 005205 656 TAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 694 (709)
Q Consensus 656 ti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q 694 (709)
|+.+||+|+|||+|+|+|.|+|+||++++|.|++|++.+
T Consensus 1414 ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~ 1452 (1490)
T TIGR01271 1414 ALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAA 1452 (1490)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHh
Confidence 999999999999999999999999999899999999865
No 37
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.1e-81 Score=722.93 Aligned_cols=531 Identities=17% Similarity=0.172 Sum_probs=413.6
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 005205 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (709)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (709)
+++++++++ .++++.+++++++.++.++..+..|++++.++|.... ... ..+ .+. +++.+
T Consensus 5 ~~~l~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~--~~~------~~~---~~~-~~~~~---- 64 (555)
T TIGR01194 5 IGEILALLR----SPFPAITAFSIALGLAGGLAIIALLASINNAIHEENF--LGQ------GSL---FSF-GGLCL---- 64 (555)
T ss_pred HHHHHHHHh----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--ccc------hHH---HHH-HHHHH----
Confidence 445555554 1457777888888888888889999988888774210 000 001 000 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005205 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (709)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (709)
+..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++.++.. +..++..++.+
T Consensus 65 ---~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~ 140 (555)
T TIGR01194 65 ---LALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIF 140 (555)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHH
Confidence 12245667788888999999999999999999999999999999999999999999999877653 33344443333
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchH--HHHHHH
Q 005205 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEA--FEAEQY 345 (709)
Q Consensus 268 ~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~--~~~~~~ 345 (709)
+ ++.++++.++|.+++++++.+++.+++..+..+..++..++.++..++.++.+.|.+.|+++||+|+.++ .+.++|
T Consensus 141 ~-~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 219 (555)
T TIGR01194 141 F-FCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAI 219 (555)
T ss_pred H-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHh
Confidence 2 2233445567777777665555544444444444444455566677788899999999999999999954 567888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (709)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~ 425 (709)
++..+++.+...+.............++..+..+++++++++ .|.+|+|++++|..++..+..|+..++..+..+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~ 296 (555)
T TIGR01194 220 QESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQ 296 (555)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777766555444333332222222222223333333 37999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccc--cc-C-CC-CCC---CCCCCCceEEEEeEEEEecCC----cccceeeeeEeeCCcEEEEEcC
Q 005205 426 SLVDMKSMFQLLEEKAD--IQ-D-RD-NAM---PLNLKGGSIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGT 493 (709)
Q Consensus 426 ~~~s~~rl~~~l~~~~~--~~-~-~~-~~~---~~~~~~g~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vaIVG~ 493 (709)
+.++++|+.++++.+.+ .. + +. ... +.....+.|+|+||+|+|++. +++|+|+||+|++||++|||||
T Consensus 297 a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~ 376 (555)
T TIGR01194 297 AQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGE 376 (555)
T ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECC
Confidence 99999999999763211 11 0 00 000 111123579999999999752 3699999999999999999999
Q ss_pred CCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHc
Q 005205 494 SGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAA 573 (709)
Q Consensus 494 SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~ 573 (709)
||||||||+++|+|+|+|++|+|++||+|+++++.+++|++++||+||++||++|+++|+ .|++++++++++++.++
T Consensus 377 sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~ 453 (555)
T TIGR01194 377 NGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLE 453 (555)
T ss_pred CCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999995 46789999999999999
Q ss_pred hHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hh-cCCCeEEEEe
Q 005205 574 IHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALK-SL-ANNRTSIFIA 651 (709)
Q Consensus 574 l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~-~l-~~~~TvIvIa 651 (709)
++++++++|+||||. .+|||||||||+||||+++||+|||||||||+||++||+.|++.+. .+ .+++|+|+||
T Consensus 454 l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiis 528 (555)
T TIGR01194 454 IADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIIS 528 (555)
T ss_pred CchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 999999999999994 7999999999999999999999999999999999999999998864 34 4689999999
Q ss_pred cCchHHhhcCeEEEEeCCEEEEe
Q 005205 652 HRLTTAMQCDEIIVLENGKVIEQ 674 (709)
Q Consensus 652 HRlsti~~aD~Iivl~~G~Ive~ 674 (709)
||+++++.||+|+||++|+|+|.
T Consensus 529 H~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 529 HDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred ccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999974
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.4e-81 Score=778.96 Aligned_cols=536 Identities=20% Similarity=0.269 Sum_probs=417.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (709)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (709)
++.++.+.++.++..++.++.|++++.++|.+.... .. .. .+.. ++++++ ..++..++.....+..
T Consensus 300 ~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~--~~------~~-~~~~--~~~l~~---~~~~~~~~~~~~~~~~ 365 (1495)
T PLN03232 300 GGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGD--PA------WV-GYVY--AFLIFF---GVTFGVLCESQYFQNV 365 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cc------ch-HHHH--HHHHHH---HHHHHHHHHHHHHHHH
Confidence 455566666777788899999999999999764211 10 00 0000 011111 1111122222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 005205 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (709)
Q Consensus 204 ~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 283 (709)
.+++.++...++..+|+|+++++..++++.++|++.++++.|.+.++.+.. .+..++...+.+++.+.++ .+.++
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~~~l----~~~lg 440 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSMVLL----YQQLG 440 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----HHHHh
Confidence 578889999999999999999999999999999999999999998887653 3333333333222221111 12233
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 005205 284 WITSLSV---VAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQ 360 (709)
Q Consensus 284 ~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~ 360 (709)
+..++.+ ++++++...+.+..++..++..+..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+..
T Consensus 441 ~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~ 520 (1495)
T PLN03232 441 VASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQ 520 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222221 2222233344555666667777777888899999999999999999999999999887776666555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005205 361 RSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEK 440 (709)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~ 440 (709)
...+........ ...++.++++|++.+.+|.+|+|.+++++.++..+..|+..++..+..+.++.++++|+.++++.+
T Consensus 521 ~~~~~~~~~~~~--~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~ 598 (1495)
T PLN03232 521 LLSAFNSFILNS--IPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSE 598 (1495)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 433332221111 112233456788888999999999999999999999999999999999999999999999999876
Q ss_pred ccccCCCCCCCCCCCCceEEEEeEEEEecC--CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEE
Q 005205 441 ADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518 (709)
Q Consensus 441 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~i 518 (709)
++..+... +.....+.|+|+||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|.+.
T Consensus 599 ~~~~~~~~--~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~- 675 (1495)
T PLN03232 599 ERILAQNP--PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV- 675 (1495)
T ss_pred cccccccC--CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE-
Confidence 54222111 11112247999999999984 46899999999999999999999999999999999999999999763
Q ss_pred CCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCCh
Q 005205 519 DGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSG 598 (709)
Q Consensus 519 dG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSG 598 (709)
.+|++|+||||+|+||+|||||||+||+| ++++++++|++.|+++++++.||+|+||.|||+|.+|||
T Consensus 676 -----------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSG 743 (1495)
T PLN03232 676 -----------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISG 743 (1495)
T ss_pred -----------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCH
Confidence 46889999999999999999999999986 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecCh
Q 005205 599 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNA-LKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSH 677 (709)
Q Consensus 599 GQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~-L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth 677 (709)
|||||||||||+++||+||||||||||||++||++|.+. ++...++||+|+||||+++++.||+|++|++|+|+|+|+|
T Consensus 744 GQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~ 823 (1495)
T PLN03232 744 GQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTF 823 (1495)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCH
Confidence 999999999999999999999999999999999999765 6667789999999999999999999999999999999999
Q ss_pred HHHhhcccHHHHHHHhhh
Q 005205 678 DDLLTKAGRYAQLWGQQN 695 (709)
Q Consensus 678 ~eLl~~~g~Y~~l~~~q~ 695 (709)
+||+++++.|++++..+.
T Consensus 824 ~eL~~~~~~~~~l~~~~~ 841 (1495)
T PLN03232 824 AELSKSGSLFKKLMENAG 841 (1495)
T ss_pred HHHHhcchhHHHHHHhcc
Confidence 999999999999987653
No 39
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=6.5e-81 Score=662.38 Aligned_cols=537 Identities=27% Similarity=0.352 Sum_probs=441.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (709)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (709)
+..++...++..+..++.+..|+++-.+.|.+...... +++..+..+ .+ .+.++..+++.+|+..+
T Consensus 22 r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~-------~TLv~Ltvl---al----~ly~~~glLd~iR~~~l 87 (580)
T COG4618 22 RRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSV-------PTLVMLTVL---AL----GLYAFQGLLDAIRSRVL 87 (580)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCc-------chHHHHHHH---HH----HHHHHHHHHHHHHHHHH
Confidence 34455555666667788899999999999999754321 222222111 11 12224457899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005205 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSS-MVFNVVPTILEISMVSGILAYKFGAPF 282 (709)
Q Consensus 204 ~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l 282 (709)
.+++.++...+..++|....+.+..- +..|+=.+-+ +|.+.+..|++. ....++..-. .-+...++|.++|++
T Consensus 88 ~Rig~~lD~~L~~~v~~a~~~~~l~~---~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW--~P~yl~v~fl~Hp~l 161 (580)
T COG4618 88 VRIGERLDRQLNGPVFAASFSAPLLR---RGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPW--MPLYLAVIFLFHPWL 161 (580)
T ss_pred HHHHHHHHHHhccHHHHHHHhhHHhh---cCCCccccch-hhHHHHHHHHcCCCcchhcCCch--HHHHHHHHHHHHHHH
Confidence 99999999999999999998776543 3334222223 355666666554 2222222111 112234556678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 283 AWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRS 362 (709)
Q Consensus 283 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 362 (709)
.++.++.+++++.+.+...+..++-.++..+...+.+.....+..|.++|++.|+.....++|.+.+..+.+...+..-.
T Consensus 162 G~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~ 241 (580)
T COG4618 162 GLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDR 241 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 88888877777777666555555555555566666777888899999999999999999999999999888887776655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 005205 363 LAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKAD 442 (709)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~~ 442 (709)
.+.+..+...+-......++.+|+|++++|++|.|.+++-..++++...|+......|.++..+..+++|+.+++++.|.
T Consensus 242 ~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~ 321 (580)
T COG4618 242 NGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPA 321 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 55566555555556677788899999999999999999999999999999999999999999999999999999987664
Q ss_pred ccCCCCCCCCCCCCceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCE
Q 005205 443 IQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ 521 (709)
Q Consensus 443 ~~~~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~ 521 (709)
..+ ..+.+.+.|.+.+|+|++.=|+ ++|+|+|+||+++|||-+|||||||||||||+++|.|.++|.+|.|++||-
T Consensus 322 ~~~---~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga 398 (580)
T COG4618 322 AAE---RMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGA 398 (580)
T ss_pred ccC---CCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecch
Confidence 322 2334445689999999997664 469999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHH
Q 005205 522 DICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEK 601 (709)
Q Consensus 522 di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQr 601 (709)
|+++++.+.+-++|||.|||..||+|||+|||+=..+++++|.|.+|++.|+.||.|.+||+||||.|||+|..||||||
T Consensus 399 ~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQR 478 (580)
T COG4618 399 DLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQR 478 (580)
T ss_pred hhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHH
Confidence 99999999999999999999999999999999766678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHH
Q 005205 602 QRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDL 680 (709)
Q Consensus 602 QRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eL 680 (709)
|||+||||||.||.+++||||-|+||.+-|+.+.++|.+.+ +|+|+|+||||.|.+..+|+|+||++|++-..|+-+|.
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eV 558 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEV 558 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHH
Confidence 99999999999999999999999999999999999998765 78999999999999999999999999999999999999
Q ss_pred hhc
Q 005205 681 LTK 683 (709)
Q Consensus 681 l~~ 683 (709)
+++
T Consensus 559 La~ 561 (580)
T COG4618 559 LAK 561 (580)
T ss_pred HHH
Confidence 875
No 40
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.7e-79 Score=767.63 Aligned_cols=537 Identities=22% Similarity=0.302 Sum_probs=412.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (709)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (709)
++.+++.+++.++..++.++.|++++.++|.+.... .. ....... +.++++. +...+ ....+.+. .
T Consensus 300 ~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~--~~---~~~~~~~-----~~l~~~~-~~~~~-~~~~~~~~--~ 365 (1622)
T PLN03130 300 GGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGE--PA---WIGYIYA-----FSIFVGV-VLGVL-CEAQYFQN--V 365 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cc---hHHHHHH-----HHHHHHH-HHHHH-HHHHHHHH--H
Confidence 455666777777788899999999999999774321 00 0001110 1111111 11100 11122222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 005205 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (709)
Q Consensus 204 ~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 283 (709)
.+++.++...++..+|+|+++++..++++.++|++.++++.|.+.++.+... +..++...+.+++.++++...+.+ .+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~~~lg~-~~ 443 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLYQQLGV-AS 443 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 4788899999999999999999999999999999999999999998877543 333333333332222222211111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 284 WITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSL 363 (709)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (709)
++.++++++.+++...+.+..++..++..+..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+.....
T Consensus 444 l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~ 523 (1622)
T PLN03130 444 LIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLS 523 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222333333444455556666666777788899999999999999999999999999886666554444333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 005205 364 AFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADI 443 (709)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~~~ 443 (709)
+....... ....++.++++|++.+..|.+|+|.++++++++..+..|+..++..+..+.++.++++|+.++++.++..
T Consensus 524 ~~~~~~~~--~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~ 601 (1622)
T PLN03130 524 AFNSFILN--SIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERV 601 (1622)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 22221111 1112334556788888899999999999999999999999999999999999999999999999765432
Q ss_pred cCCCCCCCCCCCCceEEEEeEEEEecC--CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCC-CEEEECC
Q 005205 444 QDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS-GSIRIDG 520 (709)
Q Consensus 444 ~~~~~~~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~-G~I~idG 520 (709)
..... +.....+.|+|+||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++ |+|.+
T Consensus 602 ~~~~~--~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-- 677 (1622)
T PLN03130 602 LLPNP--PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-- 677 (1622)
T ss_pred cccCC--cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE--
Confidence 11111 11111247999999999974 4689999999999999999999999999999999999999999 99974
Q ss_pred EeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHH
Q 005205 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (709)
Q Consensus 521 ~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 600 (709)
|++|+||+|+|+||+|||||||+||+| .+++++++|++.|+++++|+.||+|+||.|||+|.+|||||
T Consensus 678 -----------~~~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQ 745 (1622)
T PLN03130 678 -----------RGTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQ 745 (1622)
T ss_pred -----------cCeEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHH
Confidence 568999999999999999999999997 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHH
Q 005205 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILN-ALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDD 679 (709)
Q Consensus 601 rQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~-~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~e 679 (709)
||||+||||+|+||+|+||||||||||+++|++|.+ .++...++||+|+||||+++++.||+|++|++|+|+|+|+|+|
T Consensus 746 KQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~e 825 (1622)
T PLN03130 746 KQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEE 825 (1622)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 999999999999999999999999999999999875 5677778999999999999999999999999999999999999
Q ss_pred HhhcccHHHHHHHhh
Q 005205 680 LLTKAGRYAQLWGQQ 694 (709)
Q Consensus 680 Ll~~~g~Y~~l~~~q 694 (709)
|+++++.|++++..+
T Consensus 826 L~~~~~~~~~l~~~~ 840 (1622)
T PLN03130 826 LSNNGPLFQKLMENA 840 (1622)
T ss_pred HHhcchhHHHHHHhc
Confidence 999999999998765
No 41
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=6.3e-76 Score=674.76 Aligned_cols=523 Identities=17% Similarity=0.205 Sum_probs=386.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 122 EFRLRVITALGFLVAAKVLNVQ-VPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRT 200 (709)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~-~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (709)
++++.+++.+++.++..++.+. .|++.+.++|.+.. .. ..+.. + ++++++. .++.+++.
T Consensus 10 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~---~~------~~~~~-~---~~~~~~~-------~~~~~~~~ 69 (547)
T PRK10522 10 QYRWPFISVMALSLASAALGIGLIAFINQRLIETADT---SL------LVLPE-F---LGLLLLL-------MAVTLGSQ 69 (547)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cc------hHHHH-H---HHHHHHH-------HHHHHHHH
Confidence 4466667777777777777776 47788888886421 00 00100 0 0011111 12445677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005205 201 AVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGA 280 (709)
Q Consensus 201 ~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (709)
++..+++.++..++|.++|+|++++|+++|+++++|++.+++++|.+.+..++.. +..++..++.+++ ..++++.++|
T Consensus 70 ~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~-~~~~l~~~~~ 147 (547)
T PRK10522 70 LALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTLG-SAAYLAWLSP 147 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHhH
Confidence 8888899999999999999999999999999999999999999998887765432 3334444333322 2234455678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcch---HHHHHHHHHHHHHHHHHHH
Q 005205 281 PFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNE---AFEAEQYDEFLRRYEDAAL 357 (709)
Q Consensus 281 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e---~~~~~~~~~~~~~~~~~~~ 357 (709)
.+++++++.+++.+++.....+..++..++.++..++.++.+.|.++|+++++ ++.+ +.+.++|++..+++.+...
T Consensus 148 ~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (547)
T PRK10522 148 KMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHII 226 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhH
Confidence 77777666666655555555555555566667778888999999999999996 4443 4567788887777776655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005205 358 KTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLL 437 (709)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l 437 (709)
+.............++.....++.+++++.. +..+.+.+.++..++..+..|+..+...+.+++++..+.+|+.+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~ 303 (547)
T PRK10522 227 RADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLA 303 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5544333222222111111111122222211 1233444444444555677899999999999999999999999997
Q ss_pred cccccccCCCCCCCCCCCCceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEE
Q 005205 438 EEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517 (709)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~ 517 (709)
+.+++.+.+ ...+.+ ..+.|+|+||+|+|++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 304 ~~~~~~~~~-~~~~~~-~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~ 381 (547)
T PRK10522 304 LAPYKAEFP-RPQAFP-DWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 (547)
T ss_pred ccccccccc-cccccC-cCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 654322111 111111 124799999999998667899999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCC
Q 005205 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLS 597 (709)
Q Consensus 518 idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LS 597 (709)
+||+|+++++.+++|++|+||||||++|++||+|| + +++++++++++++.+++++++. +|+|. .+|.+||
T Consensus 382 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~LS 451 (547)
T PRK10522 382 LDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR-----ISNLKLS 451 (547)
T ss_pred ECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-----CCCCCCC
Confidence 99999999999999999999999999999999999 3 4677888888887777766654 24442 2489999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhhcCeEEEEeCCEEEEe-
Q 005205 598 GGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQ- 674 (709)
Q Consensus 598 GGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~- 674 (709)
|||||||+||||+++||+|||||||||+||+++|+.|.+.|.+.. +++|+|+||||+++++.||+|++|++|+++|.
T Consensus 452 gGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 452 KGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999987654 48999999999999999999999999999987
Q ss_pred cChHHHhh
Q 005205 675 GSHDDLLT 682 (709)
Q Consensus 675 Gth~eLl~ 682 (709)
|+|.+-..
T Consensus 532 ~~~~~~~~ 539 (547)
T PRK10522 532 GEERDAAS 539 (547)
T ss_pred CCchhhhh
Confidence 66655443
No 42
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.1e-72 Score=702.10 Aligned_cols=550 Identities=21% Similarity=0.286 Sum_probs=417.6
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 005205 106 KIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGY 185 (709)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (709)
+.++.+++.+ ++.++..+++.++..++.++.|++++.++|.+..... . .....++ .+++++.
T Consensus 306 sl~~~l~~~~--------~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~--~-----~~~g~~~--~~~~~~~- 367 (1522)
T TIGR00957 306 SLFKVLYKTF--------GPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMA--P-----DWQGYFY--TGLLFVC- 367 (1522)
T ss_pred cHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--c-----cchHHHH--HHHHHHH-
Confidence 4555555544 3455666667777888999999999999997743211 0 0000000 0111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005205 186 GIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (709)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (709)
.++..++.....+...+++.++...++..+|+|+++++..++++..+|++.++++.|.+.+..+.. .+..++...+
T Consensus 368 ---~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~ 443 (1522)
T TIGR00957 368 ---ACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLAT-YINMIWSAPL 443 (1522)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH
Confidence 111223333344556788999999999999999999999999999999999999999888766543 2333333333
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHH
Q 005205 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY 345 (709)
Q Consensus 266 ~~~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~ 345 (709)
.+++.+.++.....+ .++..++++++++++...+.+..++..++..+..++..+.+.|.++||++||.+++|+.+.+++
T Consensus 444 ~i~~~~~ll~~~~g~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i 522 (1522)
T TIGR00957 444 QVILALYFLWLNLGP-SVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKV 522 (1522)
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333222222222121 2223333334444455555566666677777777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILS--GEMTVGDLVMVNGLLFQLSLPLNFLGSVYRET 423 (709)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~--g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l 423 (709)
++..++..+...+......... .... ....++.++.++.+.+.. +.++.+..++.++++..+..|+..++..+..+
T Consensus 523 ~~~r~~e~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~ 600 (1522)
T TIGR00957 523 EGIRQEELKVLKKSAYLHAVGT-FTWV-CTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSI 600 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877665544433333222211 1111 111122223355566653 57899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCCCCCC-CCCceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHH
Q 005205 424 VQSLVDMKSMFQLLEEKADIQDRDNAMPLN-LKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTI 501 (709)
Q Consensus 424 ~~~~~s~~rl~~~l~~~~~~~~~~~~~~~~-~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL 501 (709)
+++..+++|+.++++.+++..+........ ...+.|+++|++|+|++ ++++|+|+||+|++||+++||||||||||||
T Consensus 601 ~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTL 680 (1522)
T TIGR00957 601 VQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSL 680 (1522)
T ss_pred HHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHH
Confidence 999999999999997654321110001111 11237999999999985 4689999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhC
Q 005205 502 LRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNF 581 (709)
Q Consensus 502 ~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~L 581 (709)
+++|+|+++|++|+|.+|| +|+||||+|++|++||+|||.+|.+ .++++..++++.+++.+++..+
T Consensus 681 l~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~ 746 (1522)
T TIGR00957 681 LSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEIL 746 (1522)
T ss_pred HHHHhCCCccCCcEEEECC-------------EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhc
Confidence 9999999999999999998 5999999999999999999999975 5778888999999999999999
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH---hcCCCeEEEEecCchHHh
Q 005205 582 PAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKS---LANNRTSIFIAHRLTTAM 658 (709)
Q Consensus 582 p~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~---l~~~~TvIvIaHRlsti~ 658 (709)
|+|+||.+||+|.+|||||||||+||||++++|+|+||||||||||+++++.|++.+.+ +.+++|+|+|||+++.++
T Consensus 747 ~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~ 826 (1522)
T TIGR00957 747 PSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLP 826 (1522)
T ss_pred CCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhh
Confidence 99999999999999999999999999999999999999999999999999999999853 457899999999999999
Q ss_pred hcCeEEEEeCCEEEEecChHHHhhcccHHHHHHHhh
Q 005205 659 QCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 694 (709)
Q Consensus 659 ~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q 694 (709)
.||+|++|++|+|+++|+|+|++++++.|++++..+
T Consensus 827 ~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 862 (1522)
T TIGR00957 827 QVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTY 862 (1522)
T ss_pred hCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhh
Confidence 999999999999999999999999999999988744
No 43
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-72 Score=672.45 Aligned_cols=537 Identities=23% Similarity=0.321 Sum_probs=421.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (709)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (709)
++.+++..++..+......+.|.++..+++.+.... .. .++...++ +++.+..++.+++.....+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~--~~--~~~g~~~a---------~~lf~~~~l~~l~~~~~~~~~ 266 (1381)
T KOG0054|consen 200 GRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKR--LP--LNNGYLLA---------VLLFLASLLQSLLLHQYFFVS 266 (1381)
T ss_pred HHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCC--cc--cchhHHHH---------HHHHHHHHHHHHHHhHHHHHH
Confidence 344555555555555568889999999999774321 10 01111111 111122233444555455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 005205 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (709)
Q Consensus 204 ~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 283 (709)
.+.+.++...+...+|+|.++++...-....+|++.+.++.|.+.+..+.... ..+....+.+++.+.++...+++ -+
T Consensus 267 ~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~-h~~w~~Plqi~~~l~lLy~~LG~-sa 344 (1381)
T KOG0054|consen 267 FRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFL-HLLWSAPLQIILALYLLYGLLGP-SA 344 (1381)
T ss_pred HhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCh-HH
Confidence 78999999999999999999999888778899999999999998887765432 33344444444443333333332 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 284 WITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSL 363 (709)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (709)
+..++++++++++..++.+..++++++..+..++....+.|.++||++||.|+||+.+.++.++.-++-.+.-.|.
T Consensus 345 ~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~---- 420 (1381)
T KOG0054|consen 345 LAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKS---- 420 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4445556666777777788888888888777788888999999999999999999999888877555433333333
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005205 364 AFLNFGQNVI--FSAALSTAMVLCSHG-ILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEK 440 (709)
Q Consensus 364 ~~~~~~~~~~--~~~~~~~~l~~g~~~-v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~ 440 (709)
+....+..++ +...++.++.++++. ...+.+|....++.++++..+..|+..++..+..+.++.++++|+.+++..+
T Consensus 421 ~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~ 500 (1381)
T KOG0054|consen 421 AYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSE 500 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3322222221 222333334455555 5567889989999999999999999999999999999999999999999775
Q ss_pred ccccCCCCCCCCCCCCceEEEEeEEEEecC--CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEE
Q 005205 441 ADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518 (709)
Q Consensus 441 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~i 518 (709)
+...+.....+.......|+++|.+|++++ ..+.|+||||+|++|+.+||||+.|||||+|+..|+|..+..+|+|.+
T Consensus 501 e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v 580 (1381)
T KOG0054|consen 501 ELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAV 580 (1381)
T ss_pred ccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEE
Confidence 432222111122223347999999999985 346999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCCh
Q 005205 519 DGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSG 598 (709)
Q Consensus 519 dG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSG 598 (709)
+| .+|||||+||||||||||||.||.| .+++...++++.|++.++++.||.|..|.|||+|.||||
T Consensus 581 ~g-------------siaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSG 646 (1381)
T KOG0054|consen 581 NG-------------SVAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSG 646 (1381)
T ss_pred cC-------------eEEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcH
Confidence 99 4999999999999999999999997 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecCh
Q 005205 599 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNA-LKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSH 677 (709)
Q Consensus 599 GQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~-L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth 677 (709)
||||||+||||+|+|++|++||+|.||+|+++.++|++. |+.+.++||+|+|||.++.+++||+|+||+||+|+|+|||
T Consensus 647 GQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty 726 (1381)
T KOG0054|consen 647 GQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTY 726 (1381)
T ss_pred hHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCH
Confidence 999999999999999999999999999999999999965 8888899999999999999999999999999999999999
Q ss_pred HHHhhcccHHHHHHHh
Q 005205 678 DDLLTKAGRYAQLWGQ 693 (709)
Q Consensus 678 ~eLl~~~g~Y~~l~~~ 693 (709)
+||++.++.|.++..+
T Consensus 727 ~el~~~~~~~~~l~~~ 742 (1381)
T KOG0054|consen 727 EELLKSGGDFAELAHE 742 (1381)
T ss_pred HHHHhcchhHHHHhhc
Confidence 9999999999998543
No 44
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.6e-71 Score=647.88 Aligned_cols=537 Identities=17% Similarity=0.151 Sum_probs=418.5
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 005205 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (709)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (709)
.+.++++++++++....+-...+++.++++++.+++.+..|++.+.++|.+.... .. .+...++..+++++
T Consensus 76 ~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~--~~------~f~~~l~~~~l~~~- 146 (659)
T TIGR00954 76 LGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRS--PR------NFAWILFKWFLIAP- 146 (659)
T ss_pred HHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC--HH------HHHHHHHHHHHHHH-
Confidence 3446667777762211111225666777777888999999999999999876321 11 01000111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005205 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (709)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (709)
+..++..+..+++.++...+..++.++++.+.|++....++.+|++ ++|++.+|+++|.+.+...+...+..++..+
T Consensus 147 --~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~ 223 (659)
T TIGR00954 147 --PASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPI 223 (659)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222344567778888889999999999999999999999999987 7899999999999998887777777777666
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHH
Q 005205 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (709)
Q Consensus 265 ~~~~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~ 344 (709)
+.++..++.+...++|.+++++++.+++..++...+.+...+..++.++..++..+.+.|.++|+++||+|+.|+.+.++
T Consensus 224 ~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~ 303 (659)
T TIGR00954 224 LDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKET 303 (659)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHH
Confidence 65544333333335666666555555555555555666666777777788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHh-c----CCcCHHHHHH-HHHH---HHHHHHHH
Q 005205 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAA-LSTAM-VLCSHGIL-S----GEMTVGDLVM-VNGL---LFQLSLPL 413 (709)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l-~~g~~~v~-~----g~ltvG~l~a-~~~~---~~~l~~pl 413 (709)
|++..+++.+...+..+..+...++..++.... ..+++ +.|...+. . |.+|+|.+++ |+.+ +..+..|+
T Consensus 304 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~ 383 (659)
T TIGR00954 304 VMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADAL 383 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888887777766665543321 22222 23332222 2 7899998776 5554 56779999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccCC--------C--CC-------------CCCCCCCceEEEEeEEEEecC
Q 005205 414 NFLGSVYRETVQSLVDMKSMFQLLEEKADIQDR--------D--NA-------------MPLNLKGGSIQFDNVHFSYLT 470 (709)
Q Consensus 414 ~~l~~~~~~l~~~~~s~~rl~~~l~~~~~~~~~--------~--~~-------------~~~~~~~g~I~f~nVsF~Y~~ 470 (709)
..++..+.+++++.++.+|++++++.+++..+. . +. .......+.|+++||+|+|++
T Consensus 384 ~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~ 463 (659)
T TIGR00954 384 GRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN 463 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC
Confidence 999999999999999999999999765432110 0 00 001112356999999999986
Q ss_pred CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHH
Q 005205 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (709)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIr 550 (709)
++++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|.+|+ |++++||||+|++|++|++
T Consensus 464 ~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~ 532 (659)
T TIGR00954 464 GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLR 532 (659)
T ss_pred CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHH
Confidence 66899999999999999999999999999999999999999999999874 6789999999999999999
Q ss_pred HHHHcCC-------CCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 005205 551 HNIRYGR-------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEAT 623 (709)
Q Consensus 551 eNI~~g~-------~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaT 623 (709)
|||.++. ++.++++++++++.+++++++.+ |.||||..+ .+.+||||||||++||||++++|++|||||||
T Consensus 533 eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpt 610 (659)
T TIGR00954 533 DQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECT 610 (659)
T ss_pred HHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 9999974 45678999999999999999988 999999987 46799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeC
Q 005205 624 SALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLEN 668 (709)
Q Consensus 624 SaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~ 668 (709)
|+||+++|+.+.+.+++ .++|+|+||||+++++.||+|++|++
T Consensus 611 s~LD~~~~~~l~~~l~~--~~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 611 SAVSVDVEGYMYRLCRE--FGITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred cCCCHHHHHHHHHHHHH--cCCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999999999999987 38999999999999999999999973
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.7e-68 Score=663.63 Aligned_cols=533 Identities=18% Similarity=0.237 Sum_probs=410.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (709)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (709)
++.+++..++.++..++.++.|++++.+++.+.... ... ......+ .++++ +..++..++.....+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~-~~~-----~~~~~~l--~~~~~----~~~~~~~l~~~~~~~~~ 146 (1490)
T TIGR01271 79 FWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFN-APE-----REIAYYL--ALGLC----LLFIVRTLLLHPAIFGL 146 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCc-----hhHHHHH--HHHHH----HHHHHHHHHHHHHHHHH
Confidence 444555555566777889999999999999863211 000 0000000 01111 11122234444556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 005205 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (709)
Q Consensus 204 ~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 283 (709)
.+++.++...+...+|+|+++++...+++..+|++.++++.|++.+....... ..++...+.+++.++++...++ +.+
T Consensus 147 ~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G-~~~ 224 (1490)
T TIGR01271 147 HHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLE-VNG 224 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 77888899999999999999999999999999999999999998887765432 2233333333333333333333 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 284 WITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSL 363 (709)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (709)
++.++++++++++...+.+...+.+++..+..++..+.+.|.++||++||.|++|+.+.+++++..++..+...+.....
T Consensus 225 l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~ 304 (1490)
T TIGR01271 225 FCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLR 304 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555566666677777777777788888899999999999999999999999888886655444444433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 005205 364 AFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPL-NFLGSVYRETVQSLVDMKSMFQLLEEKAD 442 (709)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl-~~l~~~~~~l~~~~~s~~rl~~~l~~~~~ 442 (709)
....... .....++.++.+++|.+..+ ++++.++++++++..+..|+ ..++..+..+.++.++++||.++|..++.
T Consensus 305 ~~~~~~~--~~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~ 381 (1490)
T TIGR01271 305 YFYSSAF--FFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEY 381 (1490)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 2211111 12223334445666766654 78999999999999998897 47999999999999999999999976543
Q ss_pred ccCCCCCCCCCCCCceEEEEeEEEEecC---------------------------------CcccceeeeeEeeCCcEEE
Q 005205 443 IQDRDNAMPLNLKGGSIQFDNVHFSYLT---------------------------------ERKILDGVSFVVPAGKSVA 489 (709)
Q Consensus 443 ~~~~~~~~~~~~~~g~I~f~nVsF~Y~~---------------------------------~~~vL~~isl~I~~Ge~va 489 (709)
..... . .....|+++|++|.|+. .+++|+|+||+|++|+.++
T Consensus 382 ~~~~~---~--~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~ 456 (1490)
T TIGR01271 382 KTLEY---N--LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLA 456 (1490)
T ss_pred ccccc---c--CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEE
Confidence 21110 0 11235999999999952 1368999999999999999
Q ss_pred EEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHH
Q 005205 490 IVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAA 569 (709)
Q Consensus 490 IVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~ 569 (709)
|+||+|||||||+++|+|+++|++|+|.+|| +|+||+|+|+||++||+|||.||.+ .++++..+++
T Consensus 457 I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~ 522 (1490)
T TIGR01271 457 VAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVI 522 (1490)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHH
Confidence 9999999999999999999999999999998 5999999999999999999999975 5667778888
Q ss_pred HHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCeEE
Q 005205 570 RRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNA-LKSLANNRTSI 648 (709)
Q Consensus 570 ~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~-L~~l~~~~TvI 648 (709)
+.+++++++..+|+|++|.|||+|.+|||||||||+||||++++|+|+||||||||||+++++.|++. ++++.+++|+|
T Consensus 523 ~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvi 602 (1490)
T TIGR01271 523 KACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRI 602 (1490)
T ss_pred HHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999985 67777899999
Q ss_pred EEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHHHH
Q 005205 649 FIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWG 692 (709)
Q Consensus 649 vIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~ 692 (709)
+|||+++.++.||+|++|++|+|++.|+|+|+.+.++.|.+.+.
T Consensus 603 lvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~ 646 (1490)
T TIGR01271 603 LVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLL 646 (1490)
T ss_pred EEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcChHHHHHHh
Confidence 99999999999999999999999999999999988788877763
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.2e-65 Score=642.44 Aligned_cols=549 Identities=21% Similarity=0.296 Sum_probs=415.8
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 005205 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (709)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (709)
.+.++.+++.+ ++.+++.+++.++..++.++.|++++.+++.+... .. .+...+. ++++
T Consensus 232 ~~l~~~l~~~~--------~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~--~~------~~~~g~~-----l~~~ 290 (1560)
T PTZ00243 232 LSLLRTLFAAL--------PYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDAD--NA------TWGRGLG-----LVLT 290 (1560)
T ss_pred cHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--Cc------chhHHHH-----HHHH
Confidence 44555555544 45556677777888899999999999999876321 11 0100000 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc--ccChhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 005205 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHL--SRETGALNRIIDRGSRAINFILSSMVFNVVP 262 (709)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~--~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~ 262 (709)
+.+..++..++...+.+...+.+.++...+...+|+|+++++...+. +..+|++.++++.|.+.+..+.... ..++.
T Consensus 291 l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~-~~l~~ 369 (1560)
T PTZ00243 291 LFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYC-MYLWS 369 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHH
Confidence 11222334456666777888999999999999999999999987776 5688999999999999888776443 33444
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHH
Q 005205 263 TILEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEA 342 (709)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~ 342 (709)
..+.+++.++++....+| .+++.++++++.+++...+.+...+.+++..+..++..+.+.|.++||++||.+++|+.+.
T Consensus 370 ~Pl~li~~~~lL~~~lG~-~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~ 448 (1560)
T PTZ00243 370 SPMVLLLSILLLSRLVGW-CALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFV 448 (1560)
T ss_pred HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443333333333232 3334444444444555555666666677777777788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 343 EQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRE 422 (709)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~ 422 (709)
+++++..++..+...+......+...+... ...+..++.+++|.+..|.+|++.+++++.++..+..|+..++..+..
T Consensus 449 ~ri~~~R~~El~~l~~~~~~~~~~~~~~~~--~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~ 526 (1560)
T PTZ00243 449 ANIEDKRARELRYLRDVQLARVATSFVNNA--TPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTT 526 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999886665555443433333222221111 112223335667778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccc-------cCC-----------C------C-------C--CC------------------
Q 005205 423 TVQSLVDMKSMFQLLEEKADI-------QDR-----------D------N-------A--MP------------------ 451 (709)
Q Consensus 423 l~~~~~s~~rl~~~l~~~~~~-------~~~-----------~------~-------~--~~------------------ 451 (709)
+.++.++++||.++|+.++.. .+. . + + .+
T Consensus 527 ~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (1560)
T PTZ00243 527 VLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLC 606 (1560)
T ss_pred HHHHHHHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcc
Confidence 999999999999999754310 000 0 0 0 00
Q ss_pred -------CCCCCceEEEEeEEEEec---------------------------------------CCcccceeeeeEeeCC
Q 005205 452 -------LNLKGGSIQFDNVHFSYL---------------------------------------TERKILDGVSFVVPAG 485 (709)
Q Consensus 452 -------~~~~~g~I~f~nVsF~Y~---------------------------------------~~~~vL~~isl~I~~G 485 (709)
.+...+.+.++|++|+++ +++++|+|+||+|++|
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G 686 (1560)
T PTZ00243 607 CEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRG 686 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCC
Confidence 000113578888888643 1246899999999999
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHH
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEV 565 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei 565 (709)
++++|+||||||||||+++|+|+++|++|+|.++ ++||||||+|++|++||+|||.++.+ .+++++
T Consensus 687 ~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~ 752 (1560)
T PTZ00243 687 KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDE-EDAARL 752 (1560)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCCh-hhHHHH
Confidence 9999999999999999999999999999999863 47999999999999999999999875 456678
Q ss_pred HHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCC
Q 005205 566 YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNA-LKSLANN 644 (709)
Q Consensus 566 ~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~-L~~l~~~ 644 (709)
.++++.++++++++.+|+|++|.+||+|.+|||||||||+||||++.+|+|||||||||+||+++++.+.+. +....++
T Consensus 753 ~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~ 832 (1560)
T PTZ00243 753 ADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAG 832 (1560)
T ss_pred HHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCC
Confidence 889999999999999999999999999999999999999999999999999999999999999999988865 4445578
Q ss_pred CeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHHHHh
Q 005205 645 RTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQ 693 (709)
Q Consensus 645 ~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~ 693 (709)
+|+|+|||+++.++.||+|++|++|+|+++|+|+|+++. +.|.++...
T Consensus 833 ~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~-~~~~~~~~~ 880 (1560)
T PTZ00243 833 KTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT-SLYATLAAE 880 (1560)
T ss_pred CEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC-hHHHHHHHh
Confidence 999999999999999999999999999999999999974 568777654
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.9e-58 Score=481.16 Aligned_cols=236 Identities=31% Similarity=0.519 Sum_probs=223.9
Q ss_pred ceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 457 g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
|.|+|+||+|+|++ +.++|+|+||+|++||+++|||+||||||||+++|+|+++ ++|+|++||+++..++...+|+.|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 46999999999973 5679999999999999999999999999999999999998 799999999999999999999999
Q ss_pred EEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 536 ~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
+||||+|.+|++|++||+.+..+ .++++++++++.+++++++.++|+||||.++|+|.+||||||||++||||++++|+
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred EEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999975433 57889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHHHHhh
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 694 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q 694 (709)
||||||||++||+.+.+.+++.|++..+++|+|+||||+++++.||+|+||++|+|+|.|++++|++.++.|++++...
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 237 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPS 237 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhc
Confidence 9999999999999999999999998888999999999999999999999999999999999999999888888887654
No 48
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-54 Score=462.75 Aligned_cols=223 Identities=30% Similarity=0.481 Sum_probs=199.4
Q ss_pred CCCceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCC--C
Q 005205 454 LKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDIC--E 525 (709)
Q Consensus 454 ~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-----p~~G~I~idG~di~--~ 525 (709)
+..+.|+|+||+|+|++ .+++|+|+||+|++||++||||+||||||||+++|+|+++ |++|+|.+||+|+. .
T Consensus 76 ~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred CcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34568999999999973 4589999999999999999999999999999999999997 57999999999997 4
Q ss_pred CCHHHhhcceEEEcCCCCCCchhHHHHHHcCCC--CCCHHHHHH-----HHHHHchHHHHHhCCCCccccccCCCCCCCh
Q 005205 526 VTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SATEEEVYD-----AARRAAIHDTIMNFPAKYSTVVGERGLKLSG 598 (709)
Q Consensus 526 ~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~--~~s~~ei~~-----A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSG 598 (709)
++...+|+.++||||+|++|++||+|||.|+.. ..++++.++ +++.++ |++++++.++++|.+|||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNALSG 228 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccCCH
Confidence 566789999999999999999999999998742 244555433 344444 455677899999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecCh
Q 005205 599 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSH 677 (709)
Q Consensus 599 GQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth 677 (709)
|||||++||||++++|+|||||||||+||+++.+.+++.|+++.+++|+|+|||++.++.. ||+|+||++|+|+|.|++
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999999889999999999999988 999999999999999999
Q ss_pred HHHhhc
Q 005205 678 DDLLTK 683 (709)
Q Consensus 678 ~eLl~~ 683 (709)
+++...
T Consensus 309 ~~l~~~ 314 (329)
T PRK14257 309 KTIFIH 314 (329)
T ss_pred HHHhcC
Confidence 999864
No 49
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.4e-52 Score=431.29 Aligned_cols=235 Identities=45% Similarity=0.721 Sum_probs=221.8
Q ss_pred EEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 459 IQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 459 I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
|+++||+++|+. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 579999999974 4679999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 005205 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (709)
Q Consensus 538 V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~IL 617 (709)
|||++.+|+.|++|||.++.+..+.+++.++++..++++++..+|.|+++.....+.+||||||||++||||++.+|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999999876555677788888889999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHHHHh
Q 005205 618 LCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQ 693 (709)
Q Consensus 618 ILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~ 693 (709)
||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++++..+.|+.++..
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 236 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQL 236 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHHhc
Confidence 9999999999999999999999988889999999999999999999999999999999999999999999988753
No 50
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-53 Score=406.60 Aligned_cols=215 Identities=35% Similarity=0.601 Sum_probs=190.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeC-CCCCHHHhhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI-CEVTLESLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di-~~~~~~~lR~~i~ 536 (709)
-|+++||+.+|. +..||+||||+|++||.++|+||||||||||+++|.+|-+|++|+|.+||.++ ...+...+|+++|
T Consensus 2 mi~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 489999999995 56899999999999999999999999999999999999999999999999877 3348899999999
Q ss_pred EEcCCCCCCc-hhHHHHHHcCCC---CCCHHH----HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 537 VVPQDTVLFN-DTIFHNIRYGRL---SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 537 ~V~Q~~~LF~-gTIreNI~~g~~---~~s~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
+|+|+..||. -|+.|||.++.- ..+.+| -.+.+++.|+.|-....| .+|||||+||+||||
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIAR 149 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIAR 149 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHHH
Confidence 9999999996 599999998731 223333 334556667777666665 579999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhcc
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
||.-+|+++++|||||||||+.-..+.+.++++. .|.|.|+|||.+...++ ||||+.||+|+|+|+|+++|+..+.
T Consensus 150 ALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 150 ALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 9999999999999999999999999999998886 57899999999999988 8999999999999999999998753
No 51
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.7e-51 Score=428.28 Aligned_cols=238 Identities=32% Similarity=0.551 Sum_probs=222.5
Q ss_pred CceEEEEeEEEEecCC-cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcc
Q 005205 456 GGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (709)
Q Consensus 456 ~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~ 534 (709)
.+.|+++||+++|++. +++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|++||.++.+++...+|+.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 4689999999999753 579999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 535 IGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 535 i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
|+||+|++.+|++|++||+.+... ..+++++++++.+++++++..+|.|++|.+++.+.+||||||||++||||++++|
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999976532 3466788899999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhc-ccHHHHHHHh
Q 005205 615 PILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK-AGRYAQLWGQ 693 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~-~g~Y~~l~~~ 693 (709)
++|||||||++||+++++.+.+.|+++.+++|+|++||+++.+..||+|++|++|+|++.|+++++++. ++.|+++|..
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 255 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHhc
Confidence 999999999999999999999999988789999999999999999999999999999999999999875 5778888765
Q ss_pred h
Q 005205 694 Q 694 (709)
Q Consensus 694 q 694 (709)
|
T Consensus 256 ~ 256 (257)
T cd03288 256 D 256 (257)
T ss_pred c
Confidence 4
No 52
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-51 Score=421.64 Aligned_cols=235 Identities=66% Similarity=1.019 Sum_probs=222.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+++|++++++|+|+||+|++|+++||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 57999999997556799999999999999999999999999999999999999999999999999999998999999999
Q ss_pred cCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 005205 539 PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILL 618 (709)
Q Consensus 539 ~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILI 618 (709)
+|++.+|++|++||+.++.+..+++++.++++..++.+.+..+|.|+++.+..+...||||||||++|||||+++|++||
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~lll 160 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILL 160 (236)
T ss_pred CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999876667778888888889999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHHHHh
Q 005205 619 CDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQ 693 (709)
Q Consensus 619 LDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~ 693 (709)
|||||++||+++.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++.+..+.|++++..
T Consensus 161 lDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~ 235 (236)
T cd03253 161 LDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKA 235 (236)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHHhc
Confidence 999999999999999999999887789999999999999999999999999999999999999888888887764
No 53
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-51 Score=416.30 Aligned_cols=228 Identities=52% Similarity=0.828 Sum_probs=215.6
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
+.|+++|++|+|++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 ~~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 1 GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred CeEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 36899999999975567999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 005205 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (709)
Q Consensus 537 ~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~I 616 (709)
|++|++.+|++|++||+.++.+...++++.++++..++.++++.+|.|+++.++.....||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998766667788888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 617 LLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 617 LILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.++.||+|++|++|++++.|+.++++++.
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhhC
Confidence 99999999999999999999999987789999999999999999999999999999999999887654
No 54
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-51 Score=417.01 Aligned_cols=223 Identities=36% Similarity=0.595 Sum_probs=192.3
Q ss_pred EEEEeEEEEecC----CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC---HHHh
Q 005205 459 IQFDNVHFSYLT----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT---LESL 531 (709)
Q Consensus 459 I~f~nVsF~Y~~----~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~---~~~l 531 (709)
|+|+|||+.|+. ...+|+||||+|++||+.||||+||+|||||++++-+|-.|++|+|.+||+|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 899999999985 247999999999999999999999999999999999999999999999998887777 5567
Q ss_pred hcceEEEcCCCCCCc-hhHHHHHHcCCC--CCCHH----HHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 532 RKSIGVVPQDTVLFN-DTIFHNIRYGRL--SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 532 R~~i~~V~Q~~~LF~-gTIreNI~~g~~--~~s~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
|++||+++|++-|++ .|+.|||+|.-. ..+.+ ++.+.++..|+.|.-.+. -.+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~y-----------P~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRY-----------PAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccC-----------chhcCcchhhHH
Confidence 789999999999998 799999998531 23333 445566666666555444 478999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHh
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl 681 (709)
+|||||..+|+||+.|||||||||+|-+.|.+-|+++. -|-|+++|||-++.++. |||+.|||+|+|||+|+-.|+.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999987764 47899999999999998 9999999999999999999987
Q ss_pred hcc--cHHHHHHH
Q 005205 682 TKA--GRYAQLWG 692 (709)
Q Consensus 682 ~~~--g~Y~~l~~ 692 (709)
... ..-+++..
T Consensus 231 ~~Pk~~~t~~fi~ 243 (339)
T COG1135 231 ANPKHAITQEFIG 243 (339)
T ss_pred cCcchHHHHHHHH
Confidence 643 33455554
No 55
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-51 Score=395.54 Aligned_cols=218 Identities=32% Similarity=0.531 Sum_probs=199.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCC-----CEEEECCEeCCC--CCHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS-----GSIRIDGQDICE--VTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~-----G~I~idG~di~~--~~~~~ 530 (709)
.++++|++|.|. ++.+|+|||++|++++.+|++|||||||||+++.+-|+.+..+ |+|.+||+||.+ ++.-.
T Consensus 7 ~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 7 AIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred eeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 689999999995 6789999999999999999999999999999999999999987 999999999976 57999
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCC------CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~------~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
+|++||+|+|.|--|..||+||++||-. ..-||-++++++.|+++|-+.. .+.+.+..|||||+||+
T Consensus 86 lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQRL 158 (253)
T COG1117 86 LRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQRL 158 (253)
T ss_pred HHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHHHH
Confidence 9999999999999999999999999931 1224567899999999998764 24567889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||||||.-+|+||+||||||||||.+-.+|.+.|.+++++-|+|+|||.+... +-+|+...|-.|++||.|+-+++..+
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~ 238 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999865 55899999999999999999888754
No 56
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-50 Score=415.71 Aligned_cols=232 Identities=54% Similarity=0.873 Sum_probs=218.1
Q ss_pred EEEEeEEEEecCC-cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 459 I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
|+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5799999999743 379999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 005205 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (709)
Q Consensus 538 V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~IL 617 (709)
++|++.+|+.|++||+.++.+..+.+++.++++..+++++++.+|.|+++.++.....||||||||++|||||+++|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999986656667788888888999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHH
Q 005205 618 LCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 690 (709)
Q Consensus 618 ILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l 690 (709)
||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+.+++.+..+.|+.+
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhhh
Confidence 9999999999999999999999988899999999999999999999999999999999999999887777654
No 57
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-51 Score=402.07 Aligned_cols=213 Identities=33% Similarity=0.565 Sum_probs=190.8
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+|+|||+.|. ++.+++|+||+|++||.+.++|||||||||++|+|.||.+|++|+|+|||.|+++++...||++||||
T Consensus 2 I~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 2 IEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred ceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 79999999996 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCc-hhHHHHHHcCC--CCCCH----HHHHHHHHHHchH--HHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 005205 539 PQDTVLFN-DTIFHNIRYGR--LSATE----EEVYDAARRAAIH--DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 539 ~Q~~~LF~-gTIreNI~~g~--~~~s~----~ei~~A~~~a~l~--~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
-|..-||. -||.|||++-- ...+. +++.+.++..+++ +|..+.| ..|||||+||+.+|||
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~RA 149 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVARA 149 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHHHH
Confidence 99999995 69999998641 12333 4455666666664 3666555 5799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCch-HHhhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 610 FLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLT-TAMQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 610 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRls-ti~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
|..+|+||++|||.|||||.|.+++|+-+.++.+ ++|+|+|||++. .++-||||.||++|+|++.|+++|++++
T Consensus 150 LAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 150 LAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 9999999999999999999999999998877653 699999999987 5778999999999999999999999986
No 58
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.9e-50 Score=408.79 Aligned_cols=219 Identities=41% Similarity=0.633 Sum_probs=208.3
Q ss_pred ceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 457 g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
|.|+++|++|+|++ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 36899999999974 35899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 536 ~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
+|++|++.+|++|++|||.+..+ .+.+++.++++..++.+++..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred EEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987653 56788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecC
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGS 676 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gt 676 (709)
+|||||||++||+.+.+.+.+.|+++.+++|+|++||++..+..||+|++|++|++++.|+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999999877899999999999999999999999999999886
No 59
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=5.4e-50 Score=412.39 Aligned_cols=235 Identities=53% Similarity=0.836 Sum_probs=218.1
Q ss_pred EEEEeEEEEecC--CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 459 IQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 459 I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
|+++|+++.|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 578999999974 357999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 005205 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (709)
Q Consensus 537 ~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~I 616 (709)
|++|++.+|+.|++||+.++.+..+.+++.++++..++.+++..+|.|+++.+.....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998665566777788888899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHHHHh
Q 005205 617 LLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQ 693 (709)
Q Consensus 617 LILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~ 693 (709)
|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|+.+++....+.+++++..
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 237 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKA 237 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHhhc
Confidence 99999999999999999999999887789999999999999999999999999999999999998877777766543
No 60
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-50 Score=426.23 Aligned_cols=218 Identities=28% Similarity=0.444 Sum_probs=188.4
Q ss_pred eEEEEeEEEEecCC----cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC-------
Q 005205 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV------- 526 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~------- 526 (709)
-|+++||+|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 59999999999742 4699999999999999999999999999999999999999999999999998753
Q ss_pred ---------CHHHhhcceEEEcCCC--CCCchhHHHHHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCcc-ccccCC
Q 005205 527 ---------TLESLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGER 592 (709)
Q Consensus 527 ---------~~~~lR~~i~~V~Q~~--~LF~gTIreNI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~ 592 (709)
+...+|+.|+||+|+| .+|+.||+|||.++.. ..+.++..+ . +.+++..+ |++ ....+.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcCC
Confidence 3567899999999998 7999999999998732 234444322 2 23445554 454 456778
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHH-hhcCeEEEEeCCE
Q 005205 593 GLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQCDEIIVLENGK 670 (709)
Q Consensus 593 G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti-~~aD~Iivl~~G~ 670 (709)
+.+||||||||++|||||+++|+|||||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+ +.||+|+||++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999998764 579999999999977 5699999999999
Q ss_pred EEEecChHHHhh
Q 005205 671 VIEQGSHDDLLT 682 (709)
Q Consensus 671 Ive~Gth~eLl~ 682 (709)
|++.|+|+|+.+
T Consensus 254 i~~~g~~~~~~~ 265 (320)
T PRK13631 254 ILKTGTPYEIFT 265 (320)
T ss_pred EEEeCCHHHHhc
Confidence 999999997643
No 61
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=5.1e-49 Score=400.31 Aligned_cols=218 Identities=44% Similarity=0.685 Sum_probs=204.7
Q ss_pred eEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
+|+++|++++|++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 5899999999974 357999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 005205 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (709)
Q Consensus 537 ~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~I 616 (709)
|++|++.+|..|++||+.++.+..+++++.++++..++.+.+..+|.|++|.+.+....||||||||++||||++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655566778889999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEec
Q 005205 617 LLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQG 675 (709)
Q Consensus 617 LILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~G 675 (709)
|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999987678999999999999999999999999998765
No 62
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.6e-49 Score=424.87 Aligned_cols=224 Identities=33% Similarity=0.538 Sum_probs=193.4
Q ss_pred EEEEeEEEEecC---CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH---hh
Q 005205 459 IQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR 532 (709)
Q Consensus 459 I~f~nVsF~Y~~---~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~---lR 532 (709)
|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++.++ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999963 247999999999999999999999999999999999999999999999999999987655 58
Q ss_pred cceEEEcCCCCCCc-hhHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 005205 533 KSIGVVPQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (709)
Q Consensus 533 ~~i~~V~Q~~~LF~-gTIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRia 605 (709)
+.|+||||++.+|. .|++|||.++.. ..+. +++.++++..++.+..... ...||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-----------~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY-----------PSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999995 799999987531 2232 3455666666666554433 4689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhh
Q 005205 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 606 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
|||||+.+|+|||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.++. ||+|++|++|+|+|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998854 7899999999999865 99999999999999999999986
Q ss_pred c--ccHHHHHHHh
Q 005205 683 K--AGRYAQLWGQ 693 (709)
Q Consensus 683 ~--~g~Y~~l~~~ 693 (709)
. ...++++...
T Consensus 231 ~p~~~~~~~~~~~ 243 (343)
T TIGR02314 231 HPKTPLAQKFIRS 243 (343)
T ss_pred CCCcHHHHHHHhh
Confidence 4 3445555554
No 63
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-49 Score=404.30 Aligned_cols=218 Identities=36% Similarity=0.563 Sum_probs=187.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH---HHhhcce
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESLRKSI 535 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~---~~lR~~i 535 (709)
|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|+.|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 57899999996 4679999999999999999999999999999999999999999999999999988764 6788999
Q ss_pred EEEcCCCCCCch-hHHHHHHcCCC---CCCHHH----HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 005205 536 GVVPQDTVLFND-TIFHNIRYGRL---SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (709)
Q Consensus 536 ~~V~Q~~~LF~g-TIreNI~~g~~---~~s~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIA 607 (709)
+||||++.+|.. |++||+.++.. ..+.++ +.++++..++.++. .....+||||||||++||
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ia 148 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVALA 148 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHH
Confidence 999999999986 99999987621 233333 34444444443332 233358999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhcc
Q 005205 608 RAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 608 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
|||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++++..
T Consensus 149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 228 (235)
T cd03261 149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASD 228 (235)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCCC
Confidence 999999999999999999999999999999998753 7899999999998765 9999999999999999999998765
Q ss_pred cHHH
Q 005205 685 GRYA 688 (709)
Q Consensus 685 g~Y~ 688 (709)
..|.
T Consensus 229 ~~~~ 232 (235)
T cd03261 229 DPLV 232 (235)
T ss_pred Chhh
Confidence 5453
No 64
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.3e-48 Score=399.36 Aligned_cols=212 Identities=35% Similarity=0.581 Sum_probs=185.6
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCC-----CCCCCEEEECCEeCCCCC--HHHh
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF-----DTHSGSIRIDGQDICEVT--LESL 531 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly-----~p~~G~I~idG~di~~~~--~~~l 531 (709)
|+++||+|+|++ +++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|.++.+++ ...+
T Consensus 1 i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGD-KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 578999999964 57999999999999999999999999999999999999 999999999999998877 6678
Q ss_pred hcceEEEcCCCCCCchhHHHHHHcCCCC--C-----CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 532 RKSIGVVPQDTVLFNDTIFHNIRYGRLS--A-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 532 R~~i~~V~Q~~~LF~gTIreNI~~g~~~--~-----s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
|++++||+|++.+|+.|++||+.++... . .++++.++++..++.+.+.+.++ +.+||||||||+
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~qrv 150 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQRL 150 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHHHH
Confidence 8999999999999989999999875321 1 13455666666666555444321 578999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHH
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDL 680 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eL 680 (709)
+|||||+++|++|||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++|+
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999866689999999999876 5999999999999999998764
No 65
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.1e-48 Score=396.53 Aligned_cols=214 Identities=36% Similarity=0.582 Sum_probs=194.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.++++|++|+|+ ++++|+|+||+|++||+++|+||+|||||||+|.|+|+.+|.+|+|++||+|+.+++.+++.+.+||
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 479999999996 6899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCC-CCCchhHHHHHHcCC-CC---------CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 005205 538 VPQDT-VLFNDTIFHNIRYGR-LS---------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (709)
Q Consensus 538 V~Q~~-~LF~gTIreNI~~g~-~~---------~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaI 606 (709)
|||++ .-|.-|++|=+.+|+ |. .+++.+.+|++..++.++..+. -..||||||||+.|
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv~i 149 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRVLI 149 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHHHH
Confidence 99996 557889999999996 21 1233578889999998876542 35799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCch-HHhhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 607 ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLT-TAMQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 607 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRls-ti~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||||.++|+||+||||||+||....-+|++.++++. +++|+|+|.|+++ ..+.||++++|++|+|+.+|+++|.+..
T Consensus 150 ArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 150 ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 999999999999999999999999999999999886 3699999999997 5778999999999999999999999865
No 66
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-48 Score=382.78 Aligned_cols=224 Identities=34% Similarity=0.553 Sum_probs=188.5
Q ss_pred eEEEEeEEEEecCCc---ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC-CHHHhhc
Q 005205 458 SIQFDNVHFSYLTER---KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV-TLESLRK 533 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~---~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~-~~~~lR~ 533 (709)
-++++|+++.|+..+ ++|+||||+|.+||++||||+||||||||+++|+|+-+|++|+|++||.++... .....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999998554 699999999999999999999999999999999999999999999999766543 3447889
Q ss_pred ceEEEcCCCCC-Cc--hhHHHHH----HcCCCCCCHHHHHHHHHHHchHH-HHHhCCCCccccccCCCCCCChHHHHHHH
Q 005205 534 SIGVVPQDTVL-FN--DTIFHNI----RYGRLSATEEEVYDAARRAAIHD-TIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (709)
Q Consensus 534 ~i~~V~Q~~~L-F~--gTIreNI----~~g~~~~s~~ei~~A~~~a~l~~-~I~~Lp~G~dT~vGe~G~~LSGGQrQRia 605 (709)
.|-+|+|||+- +| -||++=| ..+.-+-.+++++++++..++.+ |..+.| ..||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 99999999973 22 3555544 32212234566889999888864 334444 579999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhh
Q 005205 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR--TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 606 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~--TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
|||||.-+|++|||||||||||+...++|++-|.++.+++ |.|+|||+++.+.+ ||||+|||+|+|||.++-+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999999888766 99999999999987 99999999999999999999987
Q ss_pred c-ccHHH-HHHH
Q 005205 683 K-AGRYA-QLWG 692 (709)
Q Consensus 683 ~-~g~Y~-~l~~ 692 (709)
. .-.|. +|.+
T Consensus 232 ~~~h~ytr~Ll~ 243 (252)
T COG1124 232 HPSHPYTRELLE 243 (252)
T ss_pred CCccHHHHHHHH
Confidence 6 34453 4443
No 67
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-48 Score=393.59 Aligned_cols=215 Identities=34% Similarity=0.591 Sum_probs=196.4
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC-CCCHHHhhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC-EVTLESLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~-~~~~~~lR~~i~ 536 (709)
-|+++|++|+|+++.++|+|+||+|++|+.++|+|+||||||||+++|.|++.|++|.|.+||.++. +.+...+|+++|
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 4899999999987679999999999999999999999999999999999999999999999999998 588999999999
Q ss_pred EEcCCC--CCCchhHHHHHHcCCCC--CCHHH----HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 537 VVPQDT--VLFNDTIFHNIRYGRLS--ATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 537 ~V~Q~~--~LF~gTIreNI~~g~~~--~s~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
||+|+| ++|..||.|.++||..+ .+.+| +.+|++.++++++-.+.| .+||||||||+|||.
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaIA~ 151 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAIAG 151 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHhhH
Confidence 999999 89999999999999542 44444 667777788877744433 589999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC--CeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLANN--RTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~--~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
+|..+|+|||||||||+||+...+.+.+.++++.+. +|+|+|||++..+.. ||+++||++|+++.+|+++|+.+.
T Consensus 152 vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 152 VLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999998754 799999999999988 999999999999999999888865
No 68
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=6.2e-48 Score=393.97 Aligned_cols=216 Identities=42% Similarity=0.675 Sum_probs=200.7
Q ss_pred CceEEEEeEEEEecCC--cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhc
Q 005205 456 GGSIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533 (709)
Q Consensus 456 ~g~I~f~nVsF~Y~~~--~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~ 533 (709)
.+.|+++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 3579999999999742 47999999999999999999999999999999999999999999999999998888888899
Q ss_pred ceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 534 ~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
.++||+|++.+|+.|++||+.++....+.+++.+.++..+++++++.+|.|+++.+.+...+||||||||++|||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999987654555666667777788999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEE
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKV 671 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~I 671 (709)
|++|||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999998778999999999999999999999999975
No 69
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=3.1e-44 Score=398.86 Aligned_cols=454 Identities=20% Similarity=0.247 Sum_probs=327.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhH------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 196 NELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGA------LNRIIDRGSRAINFILSSMVFNVVPTILEISM 269 (709)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~------l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 269 (709)
...+.++...+..+....|...+.++.++..-.|+. ...|. .-.|++.|..........+...++.++++++.
T Consensus 103 ~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l-~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islis 181 (604)
T COG4178 103 NVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRL-AQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLIS 181 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH-HhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345667777777788888888888888887744433 33321 23677777655444434444555555555444
Q ss_pred HHHHHHHHhhh-----------hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHH
Q 005205 270 VSGILAYKFGA-----------PFAWITSLSVVAYVVFTLS----VTQWRTKFRKAMNKADNDASTRAIDSLINYETVKY 334 (709)
Q Consensus 270 ~~~~l~~~~~~-----------~l~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa 334 (709)
..+++. ..+. ......+.++++|+++... +.+...++.-..++..+.....+.-.-.+.+.|-.
T Consensus 182 F~~iLw-~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAl 260 (604)
T COG4178 182 FTGILW-SLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIAL 260 (604)
T ss_pred HHHHHH-HccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 333332 0010 1111112222333333222 22222233333444555666677778888999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH
Q 005205 335 FNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLN 414 (709)
Q Consensus 335 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~ 414 (709)
|+-|+.+.++.++......+...+...+...+.........+...+.+.+++-....|+++.|+++.....+.++...++
T Consensus 261 y~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~ssls 340 (604)
T COG4178 261 YRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLS 340 (604)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHH
Confidence 99999998887776666655544433333333322222222222333345666678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc------ccccCCCCCCC--CCCCCceEEEEeEEEEecCCcccceeeeeEeeCCc
Q 005205 415 FLGSVYRETVQSLVDMKSMFQLLEEK------ADIQDRDNAMP--LNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGK 486 (709)
Q Consensus 415 ~l~~~~~~l~~~~~s~~rl~~~l~~~------~~~~~~~~~~~--~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge 486 (709)
.+...+..+.+-.+.+.|+.++.+.- ++......... .......|+|+||+..-|++.+.|+++||+|+||+
T Consensus 341 wfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~ 420 (604)
T COG4178 341 WFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGE 420 (604)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCCeeeccceeeeCCCC
Confidence 99999999999999999999986321 11111100000 00013579999999999887899999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCC--CCHHH
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS--ATEEE 564 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~--~s~~e 564 (709)
.+-|.|+||||||||++.|+|+||.-+|+|-.-. -..+-|+||.|++=.||+||=|+|-++. .+|+|
T Consensus 421 ~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~ 489 (604)
T COG4178 421 RLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAE 489 (604)
T ss_pred EEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHH
Confidence 9999999999999999999999999999986531 1248999999999999999999998654 89999
Q ss_pred HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC
Q 005205 565 VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANN 644 (709)
Q Consensus 565 i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~ 644 (709)
+.+++.++++.+++++|.+--+ =..-||+|||||||+||.++++|++++|||||||||+++|..+.+.+++...+
T Consensus 490 l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~ 564 (604)
T COG4178 490 LVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPD 564 (604)
T ss_pred HHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCC
Confidence 9999999999999999754222 34689999999999999999999999999999999999999999999998899
Q ss_pred CeEEEEecCchHHhhcCeEEEEe
Q 005205 645 RTSIFIAHRLTTAMQCDEIIVLE 667 (709)
Q Consensus 645 ~TvIvIaHRlsti~~aD~Iivl~ 667 (709)
.|+|-|+||.+.....++.+-++
T Consensus 565 ~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 565 ATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred CEEEEeccchhhHHHHhhheeec
Confidence 99999999999988888866654
No 70
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-48 Score=399.67 Aligned_cols=218 Identities=30% Similarity=0.497 Sum_probs=192.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC---CCCCEEEECCEeCCCCCHHHhhcc
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD---THSGSIRIDGQDICEVTLESLRKS 534 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~---p~~G~I~idG~di~~~~~~~lR~~ 534 (709)
.|+++||++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+|+.+.+...+|+.
T Consensus 2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 388999999996 4689999999999999999999999999999999999985 699999999999999888889999
Q ss_pred eEEEcCCCCCCchhHHHHHHcCCC--------CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 005205 535 IGVVPQDTVLFNDTIFHNIRYGRL--------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (709)
Q Consensus 535 i~~V~Q~~~LF~gTIreNI~~g~~--------~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaI 606 (709)
|+|+||++.+|+.|++|||.++.. ...++++.++++..++++++.. ...+.+.+||||||||++|
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRLCI 153 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHHHH
Confidence 999999999999999999987631 1122345566676666555443 3455678999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhc
Q 005205 607 ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 607 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++|++..
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999877899999999999875 5999999999999999999999864
No 71
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-48 Score=405.58 Aligned_cols=216 Identities=34% Similarity=0.527 Sum_probs=192.6
Q ss_pred eEEEEeEEEEecC--CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 458 SIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 458 ~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
-|+++||+++|++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 4899999999974 24699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcCCC--CCCchhHHHHHHcCCC--CCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 005205 536 GVVPQDT--VLFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (709)
Q Consensus 536 ~~V~Q~~--~LF~gTIreNI~~g~~--~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIA 607 (709)
+||+|+| .++..||+|||.++.. ..+ ++++.++++..++.++....| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 4677899999998732 123 245667777777776655544 58999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 608 RAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 608 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+..||+|++|++|++++.|+.+++.+..
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 999999999999999999999999999999998753 79999999999999899999999999999999999987653
No 72
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-47 Score=402.83 Aligned_cols=213 Identities=29% Similarity=0.516 Sum_probs=190.4
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+|+|++.+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.+.+...+++.|+|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 48999999999755679999999999999999999999999999999999999999999999999998888899999999
Q ss_pred EcCCC--CCCchhHHHHHHcCCC--CCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 005205 538 VPQDT--VLFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 538 V~Q~~--~LF~gTIreNI~~g~~--~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
|+|+| .+|..|++|||.++.. ..+ ++++.++++..++.++..+.| ..||||||||++||||
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~lara 152 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAGV 152 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99998 6889999999998632 122 245667777777777665555 3899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHh
Q 005205 610 FLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 610 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl 681 (709)
|+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+.+++.
T Consensus 153 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 999999999999999999999999999998875 479999999999998 569999999999999999987653
No 73
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.4e-48 Score=405.38 Aligned_cols=212 Identities=32% Similarity=0.554 Sum_probs=193.1
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+.+|++.. +|+|+||+|+.||.++||||||||||||+++|+||.+|++|+|+|||.|+.+++++. +.||+
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEEE
Confidence 599999999997544 999999999999999999999999999999999999999999999999999999877 78999
Q ss_pred EcCCCCCCch-hHHHHHHcCCCC------CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 538 VPQDTVLFND-TIFHNIRYGRLS------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~~------~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|+|+..||.- ||+|||+|+-.. --++++.++++..++.+.+++.| ..||||||||+||||||
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHHH
Confidence 9999999976 999999998432 22677888999999999888877 47999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
+++|++++||||+|+||+.........|+++.+ +.|+|.|||+...+ .-||||+||++|+|.+.|++.|+..+
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 999999999999999999999999888887654 57999999997654 45999999999999999999999875
No 74
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1e-47 Score=394.92 Aligned_cols=222 Identities=25% Similarity=0.441 Sum_probs=188.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHh-hcceEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGV 537 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~l-R~~i~~ 537 (709)
|+++||+|+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+ |+.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 57899999996 4679999999999999999999999999999999999999999999999999998887664 577999
Q ss_pred EcCCCCCCch-hHHHHHHcCCCCCCHHHH-------HHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 005205 538 VPQDTVLFND-TIFHNIRYGRLSATEEEV-------YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~~~s~~ei-------~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
|||++.+|.+ |++|||.++........+ ........+++.++.+ |++.........||||||||++||||
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~a 157 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIARA 157 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHHHH
Confidence 9999999987 999999886421110000 0011112334555554 56656667778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 610 FLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 610 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
|+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+++++++.
T Consensus 158 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 158 LATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 999999999999999999999999999998876 67999999999999865 999999999999999999998753
No 75
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7.6e-48 Score=360.58 Aligned_cols=211 Identities=36% Similarity=0.551 Sum_probs=188.8
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|.+++|.|+|.... -.++++|++||+|||+||||||||||++|++||..|.+|+|.|+|+|....++.+ +-++++
T Consensus 2 l~L~~V~~~y~~~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVSML 76 (231)
T ss_pred ccccceEEeeCcce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChhhh
Confidence 56889999996321 3688999999999999999999999999999999999999999999998887754 679999
Q ss_pred cCCCCCCch-hHHHHHHcCC-CC-----CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 539 PQDTVLFND-TIFHNIRYGR-LS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 539 ~Q~~~LF~g-TIreNI~~g~-~~-----~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
+||.-||.- ||++||.+|. |. ...+.+..|+...|+.+|..+||. .||||||||+||||+|+
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHh
Confidence 999999965 9999999994 43 245678899999999999999994 69999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhccc
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTKAG 685 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~~g 685 (709)
|+.|||+||||.|||||.-.+....-+.++. ++.|+++|||.++-++ .+|+++++|+|||+++|+-++++...+
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 9999999999999999999999888877765 5689999999998765 599999999999999999999987543
No 76
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.6e-47 Score=384.14 Aligned_cols=202 Identities=42% Similarity=0.656 Sum_probs=184.6
Q ss_pred ceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 457 g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
+.|+++|++++|+. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 57999999999974 35899999999999999999999999999999999999999999999999999999988899999
Q ss_pred EEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 536 ~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
+||+|++.+|++|++|||.+.++ .+++++.++++ +.+....|||||+||++||||++.+|+
T Consensus 85 ~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 85 TIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999987653 44555544443 345678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecCh
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSH 677 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth 677 (709)
+|||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+..||++++|++|++++.|++
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999998778999999999999988999999999999998863
No 77
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-47 Score=395.31 Aligned_cols=212 Identities=33% Similarity=0.559 Sum_probs=183.6
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC---HHHhhcce
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT---LESLRKSI 535 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~---~~~lR~~i 535 (709)
|+++||+++|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 578999999964368999999999999999999999999999999999999999999999999998877 56788899
Q ss_pred EEEcCCCCCCc-hhHHHHHHcCCCC--------------CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHH
Q 005205 536 GVVPQDTVLFN-DTIFHNIRYGRLS--------------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (709)
Q Consensus 536 ~~V~Q~~~LF~-gTIreNI~~g~~~--------------~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 600 (709)
+||||++.+|. .|++||+.++... ..++++.++++..++ +.........|||||
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~ 149 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL-----------LDKAYQRADQLSGGQ 149 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCC-----------hhhhCCCcccCCHHH
Confidence 99999999887 6999999875321 112233344444433 333445667999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecCh
Q 005205 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSH 677 (709)
Q Consensus 601 rQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth 677 (709)
|||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 150 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 229 (241)
T cd03256 150 QQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPP 229 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCH
Confidence 999999999999999999999999999999999999999875 3799999999999988 6999999999999999999
Q ss_pred HHHh
Q 005205 678 DDLL 681 (709)
Q Consensus 678 ~eLl 681 (709)
+++.
T Consensus 230 ~~~~ 233 (241)
T cd03256 230 AELT 233 (241)
T ss_pred HHhh
Confidence 9874
No 78
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=9.7e-47 Score=395.72 Aligned_cols=241 Identities=27% Similarity=0.451 Sum_probs=208.6
Q ss_pred HHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 431 KSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 431 ~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
+.+.+++..+++..+. . +.+...+.|+++||++. ++++|+|+||+|++||++||+|+||||||||+++|+|+++
T Consensus 15 ~~~~~~~~~~~~~~~~-~--~~~~~~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~ 88 (282)
T cd03291 15 EGFGELLEKAKQENND-R--KHSSDDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred HHHHHHHhcccccccc-c--ccCCCCCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4566666665442221 1 12223357999999995 3579999999999999999999999999999999999999
Q ss_pred CCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCcccccc
Q 005205 511 THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590 (709)
Q Consensus 511 p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vG 590 (709)
|++|+|.+|| .|+||+|++.+|++|++||+.++.. ..+.++.++++.+++.+.+..+|.+++|.++
T Consensus 89 p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~ 154 (282)
T cd03291 89 PSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLG 154 (282)
T ss_pred CCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceec
Confidence 9999999998 3999999999999999999998743 3445667778888999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCCeEEEEecCchHHhhcCeEEEEeCC
Q 005205 591 ERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNAL-KSLANNRTSIFIAHRLTTAMQCDEIIVLENG 669 (709)
Q Consensus 591 e~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L-~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G 669 (709)
+.+..||||||||++|||||+++|+||||||||++||+++...+.+.+ +++.+++|+|+|||++..+..||+|++|++|
T Consensus 155 ~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G 234 (282)
T cd03291 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234 (282)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999998754 5666789999999999999999999999999
Q ss_pred EEEEecChHHHhhcccHHHHHH
Q 005205 670 KVIEQGSHDDLLTKAGRYAQLW 691 (709)
Q Consensus 670 ~Ive~Gth~eLl~~~g~Y~~l~ 691 (709)
++++.|+++++.+....|.+.+
T Consensus 235 ~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 235 SSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred EEEEECCHHHHHhcchHHHHHH
Confidence 9999999999987656676555
No 79
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-47 Score=414.03 Aligned_cols=213 Identities=30% Similarity=0.492 Sum_probs=190.3
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++|+++.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++.. ++.|||
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 489999999995457899999999999999999999999999999999999999999999999999988764 478999
Q ss_pred EcCCCCCCc-hhHHHHHHcCCC--CCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 538 VPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 538 V~Q~~~LF~-gTIreNI~~g~~--~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|+|++.+|. .|++|||.|+.. ..+ ++++.++++..++.++..+.| .+||||||||++|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999995 699999998742 122 245667778888877766655 48999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
+++|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||++..+ ..||+|++|++|+|++.|+.+|+.++
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 999999999999999999999999999988754 78999999999866 46999999999999999999999875
No 80
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-47 Score=412.26 Aligned_cols=223 Identities=32% Similarity=0.543 Sum_probs=189.1
Q ss_pred EEEEeEEEEec--C-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH---hh
Q 005205 459 IQFDNVHFSYL--T-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR 532 (709)
Q Consensus 459 I~f~nVsF~Y~--~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~---lR 532 (709)
|+++||+|+|+ . ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997 2 358999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cceEEEcCCCCCCc-hhHHHHHHcCCC--CCCHH----HHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 005205 533 KSIGVVPQDTVLFN-DTIFHNIRYGRL--SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (709)
Q Consensus 533 ~~i~~V~Q~~~LF~-gTIreNI~~g~~--~~s~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRia 605 (709)
++|+||||++.+|. .|++|||.++.. ..+.+ ++.++++..++.++ ......+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHH
Confidence 89999999999986 699999987631 22332 33344444444333 33345689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhh
Q 005205 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 606 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
|||||+++|+|||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7899999999999875 99999999999999999999986
Q ss_pred cc--cHHHHHHH
Q 005205 683 KA--GRYAQLWG 692 (709)
Q Consensus 683 ~~--g~Y~~l~~ 692 (709)
.. ..++.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (343)
T PRK11153 231 HPKHPLTREFIQ 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 52 34444554
No 81
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.2e-47 Score=378.71 Aligned_cols=205 Identities=38% Similarity=0.547 Sum_probs=174.0
Q ss_pred EEEEeEEEEecCC---cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH---HHh-
Q 005205 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESL- 531 (709)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~---~~l- 531 (709)
|+++||+..|..+ .++|+++||+|++||.|||+||||||||||+++|.++-.|++|.|.++|.|+..++. ..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 6799999999733 379999999999999999999999999999999999999999999999999999984 334
Q ss_pred hcceEEEcCCCCCCch-hHHHHHHc----CCCCC--CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 532 RKSIGVVPQDTVLFND-TIFHNIRY----GRLSA--TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 532 R~~i~~V~Q~~~LF~g-TIreNI~~----g~~~~--s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
|++||||+|+..|+.. |++|||.+ ..... .++.+.+.++..++.+...+ ..-..||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~----------~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLK----------KKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhcc----------CCchhcCHHHHHHH
Confidence 4569999999999865 99999984 22111 13344455555565544431 22458999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhhcCeEEEEeCCEEEE
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQCDEIIVLENGKVIE 673 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive 673 (709)
||||||+.+|+|++.||||+|||++|.+.|++.++++. .|+|+|+|||+......|||++.|++|++.+
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999999884 4789999999999999999999999999544
No 82
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-47 Score=396.09 Aligned_cols=218 Identities=33% Similarity=0.519 Sum_probs=190.1
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-----p~~G~I~idG~di~~--~~~~~ 530 (709)
.|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++.+ .+...
T Consensus 6 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 6 KMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred EEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 599999999996 4679999999999999999999999999999999999975 689999999999875 45567
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCC--CC-----CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~--~~-----s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+|+.++||+|++.+|+.|++||+.++.. .. .++++.++++..++++++. +.+.....+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 85 LRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQQR 157 (253)
T ss_pred HhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHHHH
Confidence 8899999999999999999999987521 11 1345666666666655443 23456678999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|+++++.+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14242 158 LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFT 237 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 9999999999999999999999999999999999999877899999999999885 599999999999999999999976
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 238 ~ 238 (253)
T PRK14242 238 R 238 (253)
T ss_pred C
Confidence 4
No 83
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.9e-47 Score=388.73 Aligned_cols=210 Identities=30% Similarity=0.485 Sum_probs=180.8
Q ss_pred EEEEeEEEEecCC-cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 459 I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
|+++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.... ..++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5799999999743 68999999999999999999999999999999999999999999999999987643 677889999
Q ss_pred EcCCCCCC-chhHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 538 VPQDTVLF-NDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 538 V~Q~~~LF-~gTIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|+|++.+| +.|++||+.++.. ..+. +++.++++..++.+. .++ ...+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~----~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK-------ANK----RARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-------HhC----hhhhCCHHHHHHHHHHHHH
Confidence 99999999 5799999987421 1122 234444444444332 233 3458999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHH
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 680 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eL 680 (709)
+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||++..+.. ||+|++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999998878999999999998864 999999999999999999875
No 84
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-47 Score=400.77 Aligned_cols=218 Identities=33% Similarity=0.537 Sum_probs=194.5
Q ss_pred eEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
-|+++||+|+|++ .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||+++.+.+...+++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 4899999999974 467999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcCCC--CCCchhHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 537 VVPQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 537 ~V~Q~~--~LF~gTIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
||+|++ .+++.|++|||.++.. ..+. +++.++++..++++++...| ..||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 5778899999988631 1222 34667777778777766655 389999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccH
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGR 686 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~ 686 (709)
||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+..||+|++|++|++++.|+.+++.+....
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 233 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGHM 233 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCHHH
Confidence 99999999999999999999999999999998764 7899999999999999999999999999999999998865433
No 85
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-47 Score=389.90 Aligned_cols=223 Identities=35% Similarity=0.525 Sum_probs=191.3
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++|
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 589999999996 4679999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EcCCCCCCchhHHHHHHcCCCC--CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 538 VPQDTVLFNDTIFHNIRYGRLS--ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 538 V~Q~~~LF~gTIreNI~~g~~~--~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
++|++.+|+.|++||+.++... ..++++.++++..++.+ .........||||||||++||||++++|+
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999876421 12334444444444421 12234567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhcc-cHHHHHH
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTKA-GRYAQLW 691 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~~-g~Y~~l~ 691 (709)
+|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++|++... ..|.+.+
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 231 (241)
T PRK14250 152 VLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLF 231 (241)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHHHH
Confidence 9999999999999999999999998753 7999999999998775 9999999999999999999998643 2354443
No 86
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-47 Score=396.25 Aligned_cols=218 Identities=32% Similarity=0.487 Sum_probs=189.0
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCC--CCHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-----~~G~I~idG~di~~--~~~~~ 530 (709)
-|+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|++||+++.. .+...
T Consensus 7 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 7 IIETENLNLFYTD-FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred eEEEeeeEEEeCC-ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence 5999999999964 6799999999999999999999999999999999999997 49999999999863 34567
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCCC---CC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLS---AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~~---~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+|+.|+||+|++.+|+.|++|||.++... .+ ++++.++++..++.+.+ ++.+++ ...+||||||||
T Consensus 86 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~qr 158 (254)
T PRK14273 86 LRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQQR 158 (254)
T ss_pred HhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHHHH
Confidence 88999999999999999999999886311 11 34455666666654333 234444 567999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++++.+
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 238 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFF 238 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999999877899999999999875 499999999999999999999985
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 239 ~ 239 (254)
T PRK14273 239 N 239 (254)
T ss_pred C
Confidence 4
No 87
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.3e-47 Score=388.84 Aligned_cols=202 Identities=32% Similarity=0.562 Sum_probs=176.9
Q ss_pred EEEEeEEEEecCC-cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH---Hhhcc
Q 005205 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLRKS 534 (709)
Q Consensus 459 I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~---~lR~~ 534 (709)
|+++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 7899999999753 5799999999999999999999999999999999999999999999999999877643 47889
Q ss_pred eEEEcCCCCCCc-hhHHHHHHcCCC------CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 005205 535 IGVVPQDTVLFN-DTIFHNIRYGRL------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (709)
Q Consensus 535 i~~V~Q~~~LF~-gTIreNI~~g~~------~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIA 607 (709)
++||+|++.+|. .|++||+.++.. ...++++.++++..++.++....| .+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999987 599999987521 112455677777777766555444 47999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEE
Q 005205 608 RAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKV 671 (709)
Q Consensus 608 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~I 671 (709)
|||+.+|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998874 47899999999999875 899999999985
No 88
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.8e-47 Score=393.45 Aligned_cols=212 Identities=33% Similarity=0.533 Sum_probs=182.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH---HHhhcce
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESLRKSI 535 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~---~~lR~~i 535 (709)
|+++||+++|++++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++. ..+|+.+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 7899999999635689999999999999999999999999999999999999999999999999987764 4578899
Q ss_pred EEEcCCCCCCc-hhHHHHHHcCCCCC--------------CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHH
Q 005205 536 GVVPQDTVLFN-DTIFHNIRYGRLSA--------------TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (709)
Q Consensus 536 ~~V~Q~~~LF~-gTIreNI~~g~~~~--------------s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 600 (709)
+||||++.+|. .|++||+.++.... .++++.++++..++ +.........|||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~ 150 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGL-----------ADKAYQRADQLSGGQ 150 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCc-----------HhhhcCCcccCCHHH
Confidence 99999999886 69999998763210 12233344444443 333445667999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecCh
Q 005205 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSH 677 (709)
Q Consensus 601 rQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth 677 (709)
|||++|||||+.+|++||||||||+||+++.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 230 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAP 230 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCH
Confidence 999999999999999999999999999999999999998875 3789999999999985 5999999999999999999
Q ss_pred HHHh
Q 005205 678 DDLL 681 (709)
Q Consensus 678 ~eLl 681 (709)
+++.
T Consensus 231 ~~~~ 234 (243)
T TIGR02315 231 SELD 234 (243)
T ss_pred HHhC
Confidence 9874
No 89
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-47 Score=391.99 Aligned_cols=212 Identities=33% Similarity=0.532 Sum_probs=181.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 3899999999964 689999999999999999999999999999999999999999999999999877653 3678999
Q ss_pred EcCCCCCCc-hhHHHHHHcCCCC--C----CH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 005205 538 VPQDTVLFN-DTIFHNIRYGRLS--A----TE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (709)
Q Consensus 538 V~Q~~~LF~-gTIreNI~~g~~~--~----s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaI 606 (709)
|+|+|.+|. .|++|||.++... . +. +++.++++..++.++ ......+||||||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWL-----------ADRYPAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHHHH
Confidence 999999996 6999999886321 1 11 233444444444333 334456899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhc
Q 005205 607 ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 607 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||||+++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 9999999999999999999999999999999988753 789999999999865 4999999999999999999999764
No 90
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2.9e-47 Score=394.33 Aligned_cols=217 Identities=32% Similarity=0.551 Sum_probs=188.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-----CCEEEECCEeCCCC--CHHHh
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-----SGSIRIDGQDICEV--TLESL 531 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~-----~G~I~idG~di~~~--~~~~l 531 (709)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+. +...+
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGE-KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECC-eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 789999999964 57999999999999999999999999999999999999998 99999999999763 45678
Q ss_pred hcceEEEcCCCCCCchhHHHHHHcCCC--C-CC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 532 RKSIGVVPQDTVLFNDTIFHNIRYGRL--S-AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 532 R~~i~~V~Q~~~LF~gTIreNI~~g~~--~-~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
|+.++||||++.+|..|++||+.++.. . .+ ++++.++++..++.+++. ........+||||||||+
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qrv 153 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQRL 153 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHHHH
Confidence 899999999999999999999987521 1 12 234555666666653332 223455679999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhc
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
+|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++|+...
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999999877799999999999875 5999999999999999999999754
No 91
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-47 Score=399.62 Aligned_cols=218 Identities=29% Similarity=0.515 Sum_probs=189.1
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC--CCCHHHhhcce
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSI 535 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~--~~~~~~lR~~i 535 (709)
-|+++||+|+|++++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+|+.+
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 4899999999975568999999999999999999999999999999999999999999999999984 34567789999
Q ss_pred EEEcCCC--CCCchhHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 005205 536 GVVPQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (709)
Q Consensus 536 ~~V~Q~~--~LF~gTIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIA 607 (709)
+||||++ .+|+.|++|||.++.. ..+. +++.++++..+++++ ......+||||||||++||
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qrl~la 153 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRVAIA 153 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHHHHHHH
Confidence 9999998 6789999999987532 2233 234455555555443 3445779999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 608 RAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 608 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
|||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++++..
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 233 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 233 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 999999999999999999999999999999988764 799999999999987 69999999999999999999998754
Q ss_pred cH
Q 005205 685 GR 686 (709)
Q Consensus 685 g~ 686 (709)
..
T Consensus 234 ~~ 235 (283)
T PRK13636 234 EM 235 (283)
T ss_pred HH
Confidence 33
No 92
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=4.3e-47 Score=386.66 Aligned_cols=217 Identities=31% Similarity=0.520 Sum_probs=182.3
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHh-hcceEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGV 537 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~l-R~~i~~ 537 (709)
|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+ |++++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYG-KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecC-CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 57999999996 4579999999999999999999999999999999999999999999999999988887654 678999
Q ss_pred EcCCCCCCch-hHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 005205 538 VPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~I 616 (709)
|||++.+|.+ |++||+.++.+....++..+.+ ..+.+.+..++ .........||||||||++||||++++|++
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~l~~~~~l~----~~~~~~~~~LS~G~~qrv~laral~~~p~l 153 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARL--ERVYELFPRLK----ERRKQLAGTLSGGEQQMLAIARALMSRPKL 153 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHH--HHHHHHHHhhh----hhhhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999987 9999999875322111111111 12222222233 333455678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhh
Q 005205 617 LLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 617 LILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 154 LLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999999999999999999998875 57899999999998755 99999999999999999988764
No 93
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-47 Score=393.94 Aligned_cols=219 Identities=31% Similarity=0.503 Sum_probs=191.1
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHH
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLE 529 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-----p~~G~I~idG~di~~--~~~~ 529 (709)
+.|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+..
T Consensus 12 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~ 90 (260)
T PRK10744 12 SKIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA 90 (260)
T ss_pred ceEEEEEEEEEeC-CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchH
Confidence 4799999999996 4579999999999999999999999999999999999986 589999999999863 4567
Q ss_pred HhhcceEEEcCCCCCCchhHHHHHHcCCC---CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHH
Q 005205 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRL---SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (709)
Q Consensus 530 ~lR~~i~~V~Q~~~LF~gTIreNI~~g~~---~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQ 602 (709)
.+|++|+||+|++.+|..|++||+.++.. ..+. +++.++++..++.+.+ +..+.+...+|||||||
T Consensus 91 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 91 LLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred HHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHHHHH
Confidence 88999999999999999999999987632 1222 3455666666654333 23455677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHh
Q 005205 603 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 603 RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl 681 (709)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+. .||+|++|++|++++.|+.+++.
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999877899999999999885 59999999999999999999997
Q ss_pred hc
Q 005205 682 TK 683 (709)
Q Consensus 682 ~~ 683 (709)
+.
T Consensus 244 ~~ 245 (260)
T PRK10744 244 TK 245 (260)
T ss_pred hC
Confidence 64
No 94
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-46 Score=397.96 Aligned_cols=221 Identities=30% Similarity=0.542 Sum_probs=189.4
Q ss_pred eEEEEeEEEEecCC----cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC----CHH
Q 005205 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLE 529 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~----~~~ 529 (709)
.|+++||+|+|++. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 38999999999732 4799999999999999999999999999999999999999999999999999764 346
Q ss_pred HhhcceEEEcCCC--CCCchhHHHHHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCccc-cccCCCCCCChHHHHHH
Q 005205 530 SLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGEKQRV 604 (709)
Q Consensus 530 ~lR~~i~~V~Q~~--~LF~gTIreNI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQrQRi 604 (709)
.+|+.||||||+| .+|..|++|||.++.. ..+.++..+. +++.++.+ |+++ .......+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 7899999999997 6899999999998732 2344443332 23344443 6664 34566789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHh
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl 681 (709)
+|||||+.+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999874 4799999999999874 69999999999999999999988
Q ss_pred hccc
Q 005205 682 TKAG 685 (709)
Q Consensus 682 ~~~g 685 (709)
+...
T Consensus 235 ~~~~ 238 (286)
T PRK13646 235 KDKK 238 (286)
T ss_pred hCHH
Confidence 7543
No 95
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-47 Score=389.00 Aligned_cols=214 Identities=35% Similarity=0.570 Sum_probs=184.0
Q ss_pred EEEEeEEEEecCC---cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH---hh
Q 005205 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR 532 (709)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~---lR 532 (709)
|+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+... +|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999743 28999999999999999999999999999999999999999999999999998876543 47
Q ss_pred cceEEEcCCCCCCc-hhHHHHHHcCCC--CCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 005205 533 KSIGVVPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (709)
Q Consensus 533 ~~i~~V~Q~~~LF~-gTIreNI~~g~~--~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRia 605 (709)
+.++||||++.+|. .|++|||.++.. ..+ .+++.++++..++.+.. .....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKA-----------DAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hcChhhCCHHHHHHHH
Confidence 89999999999997 699999987521 122 23344455555544433 3345689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhh
Q 005205 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 606 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999988753 7899999999999865 99999999999999999998865
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 3
No 96
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-47 Score=400.92 Aligned_cols=217 Identities=36% Similarity=0.580 Sum_probs=186.1
Q ss_pred eEEEEeEEEEecCC----cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC--HHHh
Q 005205 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT--LESL 531 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~--~~~l 531 (709)
.|+++||+|+|++. +++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 38999999999742 47999999999999999999999999999999999999999999999999998754 4578
Q ss_pred hcceEEEcCCC--CCCchhHHHHHHcCCC--CCCHHHH----HHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 532 RKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEEV----YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 532 R~~i~~V~Q~~--~LF~gTIreNI~~g~~--~~s~~ei----~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
|++||||||+| .+|+.|++|||.++.. ..+.++. .++++..++. +.+........||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHH
Confidence 89999999998 6889999999998632 2344433 3444444432 1133445567999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHH
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDL 680 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eL 680 (709)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+.+|+
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998753 78999999999987 46999999999999999999998
Q ss_pred hhc
Q 005205 681 LTK 683 (709)
Q Consensus 681 l~~ 683 (709)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13637 233 FKE 235 (287)
T ss_pred HhC
Confidence 753
No 97
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-47 Score=399.78 Aligned_cols=215 Identities=26% Similarity=0.496 Sum_probs=184.0
Q ss_pred EEEEeEEEEecCC----cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC----CCHHH
Q 005205 459 IQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----VTLES 530 (709)
Q Consensus 459 I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~----~~~~~ 530 (709)
|+++||+|+|++. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 7899999999743 369999999999999999999999999999999999999999999999999863 44677
Q ss_pred hhcceEEEcCCC--CCCchhHHHHHHcCCC--CCCHHH----HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHH
Q 005205 531 LRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (709)
Q Consensus 531 lR~~i~~V~Q~~--~LF~gTIreNI~~g~~--~~s~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQ 602 (709)
+|+.++||+|+| .+|..|+.|||.|+.. ..+.++ +.++++..++.+ ........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----------~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD----------EFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhccCCcccCCHHHHH
Confidence 899999999998 7999999999998742 223333 333344334321 1223455799999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHH
Q 005205 603 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDL 680 (709)
Q Consensus 603 RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eL 680 (709)
|++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|+|++.|+++|+
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998875 479999999999987 46999999999999999999998
Q ss_pred hhc
Q 005205 681 LTK 683 (709)
Q Consensus 681 l~~ 683 (709)
...
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 753
No 98
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6e-47 Score=371.08 Aligned_cols=224 Identities=36% Similarity=0.579 Sum_probs=193.6
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH---Hhhcc
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLRKS 534 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~---~lR~~ 534 (709)
-|++++|+|+|. ++.|++||||+|++||.++|+|+||||||||+++|.|+..|++|+|+++|.|+.+++.+ .+|++
T Consensus 8 ~I~vr~v~~~fG-~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r 86 (263)
T COG1127 8 LIEVRGVTKSFG-DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKR 86 (263)
T ss_pred eEEEeeeeeecC-CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhh
Confidence 699999999994 67899999999999999999999999999999999999999999999999999999864 57999
Q ss_pred eEEEcCCCCCCch-hHHHHHHcCC---CCCCHHHHHHH----HHHHchHHH-HHhCCCCccccccCCCCCCChHHHHHHH
Q 005205 535 IGVVPQDTVLFND-TIFHNIRYGR---LSATEEEVYDA----ARRAAIHDT-IMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (709)
Q Consensus 535 i~~V~Q~~~LF~g-TIreNI~~g~---~~~s~~ei~~A----~~~a~l~~~-I~~Lp~G~dT~vGe~G~~LSGGQrQRia 605 (709)
+|+++|..-||+. ||+||+.|-- ...+++++.+. ++.+|+... -+.+| ..||||.+.|+|
T Consensus 87 ~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KRva 155 (263)
T COG1127 87 MGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKRVA 155 (263)
T ss_pred eeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHHHH
Confidence 9999999999987 9999999842 23455555443 344555544 33333 689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhh
Q 005205 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 606 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
||||+.-||+||++|||||+|||.+...+-+-|+++. -+.|+|+|||+++++.. ||||+++.+|+|+..||.+||.+
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999988887765 37899999999998776 79999999999999999999999
Q ss_pred cccHH-HHHHHh
Q 005205 683 KAGRY-AQLWGQ 693 (709)
Q Consensus 683 ~~g~Y-~~l~~~ 693 (709)
.+..| ++++..
T Consensus 236 sd~P~v~qf~~G 247 (263)
T COG1127 236 SDDPWVRQFFNG 247 (263)
T ss_pred CCCHHHHHHhcC
Confidence 76554 555543
No 99
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-47 Score=397.21 Aligned_cols=217 Identities=29% Similarity=0.533 Sum_probs=191.4
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+++|++..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++...+...+++.++|
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 37899999999755679999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EcCCC--CCCchhHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 005205 538 VPQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 538 V~Q~~--~LF~gTIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
|+|++ .+|+.|++|||.++.. ..+. +.+.++++..++.+++...| ..||||||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHHH
Confidence 99998 4788999999987531 2232 34566677767766554443 5899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhccc
Q 005205 610 FLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTKAG 685 (709)
Q Consensus 610 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~~g 685 (709)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+ +.||+|++|++|++++.|+++|+++...
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~ 230 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCHH
Confidence 9999999999999999999999999999988764 79999999999998 5699999999999999999999987544
No 100
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-47 Score=409.01 Aligned_cols=212 Identities=29% Similarity=0.499 Sum_probs=187.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++ .++.|+|
T Consensus 6 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 82 (351)
T PRK11432 6 FVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICM 82 (351)
T ss_pred EEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEE
Confidence 599999999996 4679999999999999999999999999999999999999999999999999988764 3678999
Q ss_pred EcCCCCCCch-hHHHHHHcCCC--CCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 538 VPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~--~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|+|++.||.. |++|||.|+.. ..+ ++++.++++..++.++..+. ...||||||||+||||||
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALARAL 151 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999964 99999998732 122 34566677777776554443 358999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|+||++|+|++.|+++|+.+.
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999988764 79999999999987 55999999999999999999999865
No 101
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.7e-46 Score=385.91 Aligned_cols=216 Identities=29% Similarity=0.524 Sum_probs=186.7
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... ++.++|+
T Consensus 2 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~~ 79 (236)
T TIGR03864 2 LEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGVV 79 (236)
T ss_pred EEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEEe
Confidence 78999999996 468999999999999999999999999999999999999999999999999998877644 4589999
Q ss_pred cCCCCC-CchhHHHHHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 539 PQDTVL-FNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 539 ~Q~~~L-F~gTIreNI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
+|++.+ +..|++||+.++.. ..+.++..+ .+.++++.+ |++.........||||||||++||||++++|+
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p~ 152 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRPA 152 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999988 56899999987532 122222211 233444443 55555666778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 153 LLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred EEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999875 47999999999999999999999999999999999999875
No 102
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.5e-47 Score=379.50 Aligned_cols=198 Identities=36% Similarity=0.577 Sum_probs=183.2
Q ss_pred EEEEeEEEEecCC----cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcc
Q 005205 459 IQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (709)
Q Consensus 459 I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~ 534 (709)
|+++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 5799999999754 3799999999999999999999999999999999999999999999999 6
Q ss_pred eEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 535 IGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 535 i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
|+||+|+|.+|++|++|||.++.. .+++++.++++.+++.+++..+|.|++|.+.+.+..||||||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999743 4566788888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHH-HHHhc-CCCeEEEEecCchHHhhcCeEEEEeCCE
Q 005205 615 PILLCDEATSALDSTTEAEILNA-LKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGK 670 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~-L~~l~-~~~TvIvIaHRlsti~~aD~Iivl~~G~ 670 (709)
+++||||||++||+++.+.+.+. +++.. +++|+|++||+++.++.||+|++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999999999999999988874 55553 4699999999999999999999999985
No 103
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-47 Score=392.44 Aligned_cols=218 Identities=31% Similarity=0.493 Sum_probs=187.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-----CCEEEECCEeCC--CCCHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-----SGSIRIDGQDIC--EVTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~-----~G~I~idG~di~--~~~~~~ 530 (709)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++. +.+...
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGS-NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCC-eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 4899999999964 67999999999999999999999999999999999999974 999999999997 456667
Q ss_pred hhcceEEEcCCCCCCch-hHHHHHHcCCC--C--CC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHH
Q 005205 531 LRKSIGVVPQDTVLFND-TIFHNIRYGRL--S--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEK 601 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~g-TIreNI~~g~~--~--~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQr 601 (709)
+|++++||+|++.+|.. |++||+.++.. . .+ ++++.++++..++.+++. .........||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 155 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGGQR 155 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHHHH
Confidence 89999999999999976 99999987521 1 01 233455555555543332 223456679999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHH
Q 005205 602 QRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 680 (709)
Q Consensus 602 QRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eL 680 (709)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999998765 999999999999999999999
Q ss_pred hhc
Q 005205 681 LTK 683 (709)
Q Consensus 681 l~~ 683 (709)
++.
T Consensus 236 ~~~ 238 (253)
T PRK14267 236 FEN 238 (253)
T ss_pred HhC
Confidence 864
No 104
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-47 Score=385.03 Aligned_cols=203 Identities=35% Similarity=0.544 Sum_probs=174.4
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++||
T Consensus 1 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS-VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC-eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEEE
Confidence 578999999964 689999999999999999999999999999999999999999999999999987553 57789999
Q ss_pred cCCCCCCc-hhHHHHHHcCCCC--CC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 539 PQDTVLFN-DTIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 539 ~Q~~~LF~-gTIreNI~~g~~~--~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
||++.+|. .|++||+.++... .+ ++++.++++..++.++.. ....+||||||||++|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHHHh
Confidence 99999886 6999999876321 12 233445555555544433 334689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEec
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 675 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~G 675 (709)
++|++|||||||++||+++.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999875 37999999999998754 9999999999999876
No 105
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=4.6e-47 Score=409.64 Aligned_cols=203 Identities=35% Similarity=0.528 Sum_probs=180.5
Q ss_pred CCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHh----hcceEEEcCCCCCC
Q 005205 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL----RKSIGVVPQDTVLF 545 (709)
Q Consensus 470 ~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~l----R~~i~~V~Q~~~LF 545 (709)
+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.|+.+++...+ |++|+||+|++.||
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 35679999999999999999999999999999999999999999999999999999999888 88999999999999
Q ss_pred c-hhHHHHHHcCCCC--CC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 005205 546 N-DTIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILL 618 (709)
Q Consensus 546 ~-gTIreNI~~g~~~--~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILI 618 (709)
+ .||+|||.++.+. .+ .+++.++++.+++.+++.+. ..+||||||||++|||||+.+|+|||
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~-----------p~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY-----------PDELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7 5999999986421 22 34556677777766555444 45899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 619 CDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 619 LDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||||||+||+.+.+.+++.+.++. .++|+|+|||+++.+ +.||+|++|++|+|++.|+++|++++
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999999999998874 379999999999975 66999999999999999999999875
No 106
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-46 Score=395.16 Aligned_cols=217 Identities=33% Similarity=0.528 Sum_probs=191.2
Q ss_pred eEEEEeEEEEecCC--cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 458 SIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~--~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
-|+++||+|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999742 4699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcCCC--CCCchhHHHHHHcCCC--CCCHHH----HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 005205 536 GVVPQDT--VLFNDTIFHNIRYGRL--SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (709)
Q Consensus 536 ~~V~Q~~--~LF~gTIreNI~~g~~--~~s~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIA 607 (709)
+||+|++ .+++.|+.|||.++.. ..+.++ +.++++..++.++... ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 4778999999987631 233333 4556666666655433 3468999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhccc
Q 005205 608 RAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAG 685 (709)
Q Consensus 608 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g 685 (709)
|||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++|+++..+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 999999999999999999999999999999998864 799999999999999999999999999999999999987544
No 107
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-46 Score=394.00 Aligned_cols=220 Identities=31% Similarity=0.510 Sum_probs=191.2
Q ss_pred CceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCC--CCH
Q 005205 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTL 528 (709)
Q Consensus 456 ~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-----~~G~I~idG~di~~--~~~ 528 (709)
.+.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|++||+++.+ .+.
T Consensus 17 ~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 35799999999996 46899999999999999999999999999999999999985 89999999999975 456
Q ss_pred HHhhcceEEEcCCCCCCchhHHHHHHcCCC--CC--C----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHH
Q 005205 529 ESLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA--T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (709)
Q Consensus 529 ~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~--~~--s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 600 (709)
..+|+.++||+|++.+|+.|++|||.++.. .. + ++++.++++..++.+++. .........|||||
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 168 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGGQ 168 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 678999999999999999999999987521 11 1 344566666666654432 23455677999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHH
Q 005205 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDD 679 (709)
Q Consensus 601 rQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~e 679 (709)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|++++
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 248 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEK 248 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999877899999999999985 589999999999999999999
Q ss_pred Hhhc
Q 005205 680 LLTK 683 (709)
Q Consensus 680 Ll~~ 683 (709)
+...
T Consensus 249 ~~~~ 252 (267)
T PRK14235 249 MFTN 252 (267)
T ss_pred HHhC
Confidence 8753
No 108
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-47 Score=376.94 Aligned_cols=198 Identities=31% Similarity=0.479 Sum_probs=176.7
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.+++++|+.+|+. ..||+|+||+|++||+|+||||||||||||+++|+||.+|++|+|+++|.++... ...++|
T Consensus 3 ~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~~ 76 (248)
T COG1116 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIGY 76 (248)
T ss_pred eEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEEE
Confidence 5899999999975 7899999999999999999999999999999999999999999999999988544 357999
Q ss_pred EcCCCCCCch-hHHHHHHcCCCCC------CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 538 VPQDTVLFND-TIFHNIRYGRLSA------TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~~~------s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|+|++.||.- ||+||+.++-... .++.+.++++..|+.+|-.+.| ..||||||||+||||||
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL 145 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARAL 145 (248)
T ss_pred EeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHH
Confidence 9999999996 9999999985421 2345778888889988888877 47999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchH-HhhcCeEEEEeC--CEEE
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTT-AMQCDEIIVLEN--GKVI 672 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlst-i~~aD~Iivl~~--G~Iv 672 (709)
+.+|+||+||||.||||+.|...+++-|.++.+ ++|+++|||.... +.-+|||+||.+ |+|.
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999999999888764 5999999999875 667999999999 5553
No 109
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-47 Score=390.21 Aligned_cols=218 Identities=32% Similarity=0.536 Sum_probs=185.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+|+|++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++||
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 47899999997436799999999999999999999999999999999999999999999999999988888889999999
Q ss_pred cCCCCCCc-hhHHHHHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCccc--cccCCCCCCChHHHHHHHHHHHhccC
Q 005205 539 PQDTVLFN-DTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYST--VVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 539 ~Q~~~LF~-gTIreNI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT--~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
||++.+|. .|++||+.++.. ..+.++. ...+.+.++.+ |++. ...+...+||||||||++||||++++
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~~~ 153 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALAAD 153 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHhcC
Confidence 99999996 699999987531 1121111 11223334433 3332 34556689999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhc
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 154 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 154 PPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999998753 799999999999764 5999999999999999999998754
No 110
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-46 Score=393.97 Aligned_cols=216 Identities=36% Similarity=0.584 Sum_probs=189.3
Q ss_pred eEEEEeEEEEec-CCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 458 SIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~-~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
.|+++||+++|+ +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 599999999997 3568999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcCCC--CCCchhHHHHHHcCCC--CCCHHH----HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 537 VVPQDT--VLFNDTIFHNIRYGRL--SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 537 ~V~Q~~--~LF~gTIreNI~~g~~--~~s~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
||+|++ .+++.|++|||.++.. ..+.++ +.++++..++.+++.+ ...+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lar 155 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK-----------EPQNLSGGQKQRVAIAS 155 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------CcccCCHHHHHHHHHHH
Confidence 999998 4667899999988531 123332 4445555565554443 44699999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+..
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999999998753 48999999999999899999999999999999999987654
No 111
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.6e-47 Score=381.13 Aligned_cols=199 Identities=33% Similarity=0.542 Sum_probs=175.7
Q ss_pred EEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEc
Q 005205 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (709)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 539 (709)
+++||+++|++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ..+|+.++||+
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~ 77 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVM 77 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEe
Confidence 468999999643689999999999999999999999999999999999999999999999998864 46778999999
Q ss_pred CCC--CCCchhHHHHHHcCCCCC--CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 540 QDT--VLFNDTIFHNIRYGRLSA--TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 540 Q~~--~LF~gTIreNI~~g~~~~--s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
|++ .+|+.|++||+.++.+.. .++++.++++..++.++..+.| ..||||||||++|||||+.+|+
T Consensus 78 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 78 QDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred cChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCCC
Confidence 998 478899999998864322 2356778888888777655544 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEecCchHHhh-cCeEEEEeCCEEE
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSL-ANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI 672 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l-~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Iv 672 (709)
+|||||||++||+++.+.+.+.|+++ .+++|+|++||+++.+.. ||+|++|++|++|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999887 457999999999999875 9999999999985
No 112
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-46 Score=396.05 Aligned_cols=217 Identities=30% Similarity=0.500 Sum_probs=191.4
Q ss_pred eEEEEeEEEEecC-----CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC-HHHh
Q 005205 458 SIQFDNVHFSYLT-----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT-LESL 531 (709)
Q Consensus 458 ~I~f~nVsF~Y~~-----~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~-~~~l 531 (709)
-|+++||+|+|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 4899999999973 257999999999999999999999999999999999999999999999999997654 4667
Q ss_pred hcceEEEcCCC--CCCchhHHHHHHcCCC--CCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 532 RKSIGVVPQDT--VLFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 532 R~~i~~V~Q~~--~LF~gTIreNI~~g~~--~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
|+.++||||+| .+|..|+.||+.|+.. ..+ ++++.++++..++.++..+.| ..||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 89999999998 4777899999988631 122 345667777777777666544 5899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl 681 (709)
++|||||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+..||+|++|++|+|++.|+++|+.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999875 379999999999999999999999999999999999998
Q ss_pred hccc
Q 005205 682 TKAG 685 (709)
Q Consensus 682 ~~~g 685 (709)
....
T Consensus 233 ~~~~ 236 (280)
T PRK13633 233 KEVE 236 (280)
T ss_pred cChH
Confidence 6543
No 113
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-46 Score=379.20 Aligned_cols=210 Identities=34% Similarity=0.555 Sum_probs=187.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++|++|+|.++ ++|+||||+|++|+++|||||+|||||||+|+|+|+.+|++|+|.++|.+.++... +..|||
T Consensus 4 ~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~IgY 79 (254)
T COG1121 4 MIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIGY 79 (254)
T ss_pred EEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEEE
Confidence 59999999999765 79999999999999999999999999999999999999999999999988876544 578999
Q ss_pred EcCCC---CCCchhHHHHHHcCCCC----------CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 538 VPQDT---VLFNDTIFHNIRYGRLS----------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 538 V~Q~~---~LF~gTIreNI~~g~~~----------~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
|||.. +=|.-||+|=+.+|+.. .+.+++.+|++.+++.++..+ ++| .|||||+||+
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i~----~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QIG----ELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------ccc----ccCcHHHHHH
Confidence 99955 45899999999998532 124889999999999987543 344 6999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhh
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
-|||||+.+|++|+|||||+++|+.++..|.+-|+++.+ |||+++|+|+|+.+.. +|+|+.| |++++..|+.+|.+.
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 999999999999999999999999999999999998875 8999999999998776 9999999 567888999999886
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 228 ~ 228 (254)
T COG1121 228 E 228 (254)
T ss_pred H
Confidence 4
No 114
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-46 Score=394.45 Aligned_cols=217 Identities=30% Similarity=0.540 Sum_probs=184.7
Q ss_pred eEEEEeEEEEecCC----cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC----CCHH
Q 005205 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----VTLE 529 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~----~~~~ 529 (709)
.|+++||+|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 38999999999742 479999999999999999999999999999999999999999999999999864 3466
Q ss_pred HhhcceEEEcCCC--CCCchhHHHHHHcCCC--CCCHHHH----HHHHHHHchHHHHHhCCCCccccccCCCCCCChHHH
Q 005205 530 SLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEEV----YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEK 601 (709)
Q Consensus 530 ~lR~~i~~V~Q~~--~LF~gTIreNI~~g~~--~~s~~ei----~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQr 601 (709)
.+|+.|+||+|+| .+|+.|++|||.|+.. ..+.++. .++++..++++. ........||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEE----------LLARSPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChh----------hhhCCcccCCHHHH
Confidence 7888999999998 6899999999998732 2334333 334444443211 12344578999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChH
Q 005205 602 QRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHD 678 (709)
Q Consensus 602 QRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~ 678 (709)
||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+.+
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999988753 789999999999875 59999999999999999999
Q ss_pred HHhhcc
Q 005205 679 DLLTKA 684 (709)
Q Consensus 679 eLl~~~ 684 (709)
++.+..
T Consensus 232 ~~~~~~ 237 (290)
T PRK13634 232 EIFADP 237 (290)
T ss_pred HHhcCH
Confidence 987543
No 115
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=6.5e-47 Score=384.29 Aligned_cols=202 Identities=37% Similarity=0.521 Sum_probs=173.5
Q ss_pred EEEEeEEEEecCC---cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH----h
Q 005205 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES----L 531 (709)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~----l 531 (709)
|+++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 5789999999742 68999999999999999999999999999999999999999999999999998877433 4
Q ss_pred hcceEEEcCCCCCCch-hHHHHHHcCCCC--CC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 532 RKSIGVVPQDTVLFND-TIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 532 R~~i~~V~Q~~~LF~g-TIreNI~~g~~~--~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
|++++||+|++.+|.+ |++||+.++... .+ ++++.++++..+ ++........+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVG-----------LGDRLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcC-----------CchhhhcChhhcCHHHHHHH
Confidence 6789999999999986 999999886321 11 123333444333 44444455578999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhhcCeEEEEeCCEE
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGKV 671 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~aD~Iivl~~G~I 671 (709)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998864 7999999999999989999999999975
No 116
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.3e-47 Score=358.50 Aligned_cols=208 Identities=33% Similarity=0.546 Sum_probs=188.1
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH---HHhhcce
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESLRKSI 535 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~---~~lR~~i 535 (709)
|+|+||+..|++++++|+||||+|++||++-|+||||||||||+|||++...|+.|+|.++|+|+..+.. ..||++|
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 8999999999988889999999999999999999999999999999999999999999999999977764 4699999
Q ss_pred EEEcCCCCCCc-hhHHHHHHcCC------CCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 536 GVVPQDTVLFN-DTIFHNIRYGR------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 536 ~~V~Q~~~LF~-gTIreNI~~g~------~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
|+|+||.-|.. -|+.||++|.- |..-.+++.++++.+|+.+-...||. .|||||+||+||||
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaIAR 150 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAIAR 150 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHHHH
Confidence 99999998865 59999999852 22235678889999999999999984 79999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhc-CeEEEEeCCEEEEecCh
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQC-DEIIVLENGKVIEQGSH 677 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~a-D~Iivl~~G~Ive~Gth 677 (709)
|++.+|++||=||||-+|||++...|++-++++. .|.||++.||..+.+..+ -|++.+++|+++....+
T Consensus 151 AiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 9999999999999999999999999999988764 588999999999999886 47889999999976544
No 117
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-46 Score=394.22 Aligned_cols=218 Identities=35% Similarity=0.524 Sum_probs=186.5
Q ss_pred EEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHh----hcce
Q 005205 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL----RKSI 535 (709)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~l----R~~i 535 (709)
.++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+ ++++
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 4667888885 4579999999999999999999999999999999999999999999999999988876553 4689
Q ss_pred EEEcCCCCCCc-hhHHHHHHcCCC--CC----CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 536 GVVPQDTVLFN-DTIFHNIRYGRL--SA----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 536 ~~V~Q~~~LF~-gTIreNI~~g~~--~~----s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
+||||++.+|. .|++|||.++.. .. .++++.++++..++.+++...| .+||||||||++|||
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~lAr 173 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGLAR 173 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999985 699999987521 11 1345667777777776665554 379999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhc-c
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK-A 684 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~-~ 684 (709)
||+++|+||||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++|+++. .
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 253 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPA 253 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcC
Confidence 9999999999999999999999999999998875 3799999999999875 5999999999999999999999864 3
Q ss_pred cHHHH
Q 005205 685 GRYAQ 689 (709)
Q Consensus 685 g~Y~~ 689 (709)
..|.+
T Consensus 254 ~~~~~ 258 (269)
T cd03294 254 NDYVR 258 (269)
T ss_pred cHHHH
Confidence 44543
No 118
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-46 Score=393.11 Aligned_cols=214 Identities=29% Similarity=0.499 Sum_probs=186.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC-HHHhhcceEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT-LESLRKSIGV 537 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~-~~~lR~~i~~ 537 (709)
|+++||+|+|++++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++...+ ...+++.++|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 789999999975567999999999999999999999999999999999999999999999999998775 4678889999
Q ss_pred EcCCCC--CCchhHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 005205 538 VPQDTV--LFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 538 V~Q~~~--LF~gTIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
|+|+|. +|+.|++|||.++.. ..+. +++.++++..++.++ .......||||||||++||||
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~lara 150 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKY-----------RHRSPKTLSGGQGQCVALAGI 150 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCCcccCCHHHHHHHHHHHH
Confidence 999985 678899999988632 1232 234444444454443 333456899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 610 FLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 610 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
|+.+|+||||||||++||+.+...+.+.|+++. +++|+|++||+++.++.||+|++|++|++++.|+.+++...
T Consensus 151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999998875 47999999999999999999999999999999999998754
No 119
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-46 Score=392.67 Aligned_cols=219 Identities=34% Similarity=0.540 Sum_probs=191.0
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCC--CCHH
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLE 529 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-----~~G~I~idG~di~~--~~~~ 529 (709)
+.|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .+..
T Consensus 24 ~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 24 TALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred cEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 4699999999996 46799999999999999999999999999999999999984 89999999999865 4566
Q ss_pred HhhcceEEEcCCCCCCchhHHHHHHcCCC--CC-C----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHH
Q 005205 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (709)
Q Consensus 530 ~lR~~i~~V~Q~~~LF~gTIreNI~~g~~--~~-s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQ 602 (709)
.+|+.++||+|++.+|+.|++|||.++.. .. . ++++.++++.+++.+++. +..+..+..|||||||
T Consensus 103 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQQQ 175 (272)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHHHH
Confidence 78999999999999999999999987521 11 1 234556666666654433 3456678899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHh
Q 005205 603 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 603 RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl 681 (709)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999999999999999999999877899999999999875 59999999999999999999997
Q ss_pred hc
Q 005205 682 TK 683 (709)
Q Consensus 682 ~~ 683 (709)
+.
T Consensus 256 ~~ 257 (272)
T PRK14236 256 TS 257 (272)
T ss_pred cC
Confidence 64
No 120
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-46 Score=388.30 Aligned_cols=218 Identities=32% Similarity=0.495 Sum_probs=188.9
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCCCCHHHhh
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEVTLESLR 532 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-----~~G~I~idG~di~~~~~~~lR 532 (709)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+++...+|
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 4899999999964 6799999999999999999999999999999999999984 699999999999988888899
Q ss_pred cceEEEcCCCCCC-chhHHHHHHcCCC--C--CC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 533 KSIGVVPQDTVLF-NDTIFHNIRYGRL--S--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 533 ~~i~~V~Q~~~LF-~gTIreNI~~g~~--~--~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+.|+||||++.+| +.|++||+.++.. . .. ++++.++++..++.+.+. ........+||||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~qr 154 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQQR 154 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHHHH
Confidence 9999999999755 6799999987531 0 11 234566666666544332 12234456899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHc
Confidence 9999999999999999999999999999999999999877899999999999875 699999999999999999999976
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 235 ~ 235 (250)
T PRK14247 235 N 235 (250)
T ss_pred C
Confidence 4
No 121
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-43 Score=363.37 Aligned_cols=459 Identities=18% Similarity=0.207 Sum_probs=313.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 198 LRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYK 277 (709)
Q Consensus 198 ~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (709)
+.......++++++.++|.++.++++..|+.-+++-.++.+...++.|.+.+..-+. .++.+....+..+...+. +.+
T Consensus 67 is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s-~lp~~~qa~il~l~s~aY-Lay 144 (546)
T COG4615 67 ISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFS-RLPELVQAIILTLGSAAY-LAY 144 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHh-hhHHHHHHHHHHHHHHHH-HHH
Confidence 344456678899999999999999999999999999999998888888887763322 223333332211111222 233
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHH--HHHHHHHHHHHHHHH
Q 005205 278 FGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAF--EAEQYDEFLRRYEDA 355 (709)
Q Consensus 278 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~--~~~~~~~~~~~~~~~ 355 (709)
.+|.+.+++.+.+++.++..........+.....++...++.+..+..+.|.+..+...--.+ ..+.|....+.+++.
T Consensus 145 LSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~ 224 (546)
T COG4615 145 LSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHH 224 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhh
Confidence 466555544444433333222222222223334455566777778888999999987653222 223333333333321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 356 ALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQ 435 (709)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~ 435 (709)
...............++++...+..++|+... -+--+......+...+..+..|+.++.+....+.+|.++++++.+
T Consensus 225 ~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~---~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiak 301 (546)
T COG4615 225 IIRANTFHLLAVNWSNIMLLGLIGLVFWLALS---LGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAK 301 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 11111110001111222222222222222111 121222233334445556788999999999999999999999998
Q ss_pred HhcccccccCCCCCCCCCCCCceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCE
Q 005205 436 LLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515 (709)
Q Consensus 436 ~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~ 515 (709)
+-..|+ ..+-..+.+.+. -..||++||.|+|++...=+.-||++|++||.|-|+|.+||||||+++||.|+|.|++|+
T Consensus 302 le~~~~-~a~~~~~q~~p~-~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~ 379 (546)
T COG4615 302 LELAPY-KADFPRPQAFPD-WKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE 379 (546)
T ss_pred hhcCCc-cccCCCCCcCCc-ccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCc
Confidence 755332 222222222221 246999999999987656688899999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCC-CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCC
Q 005205 516 IRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGL 594 (709)
Q Consensus 516 I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~-~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~ 594 (709)
|++||.|+..-+++++|+-++-|+-|-+||+.++ |.+. ++++.+..-++.-.+..-. ++.+|--+ -.
T Consensus 380 I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kt-sl~d~~fs-----~~ 447 (546)
T COG4615 380 ILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKT-SLNDGRFS-----NL 447 (546)
T ss_pred eeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhh-cccCCccc-----cc
Confidence 9999999999999999999999999999999764 4333 6777776666665554322 23333222 25
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhhcCeEEEEeCCEEE
Q 005205 595 KLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQCDEIIVLENGKVI 672 (709)
Q Consensus 595 ~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~aD~Iivl~~G~Iv 672 (709)
+||-|||.|+|+-=|++-+.||++|||=-+-=||.=.+...+.+--+. .|||++.|||+-.....|||++-|++|+++
T Consensus 448 kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~ 527 (546)
T COG4615 448 KLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLS 527 (546)
T ss_pred ccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCcee
Confidence 899999999999999999999999999999999999988887653322 689999999999999999999999999999
Q ss_pred Eec
Q 005205 673 EQG 675 (709)
Q Consensus 673 e~G 675 (709)
|.-
T Consensus 528 e~t 530 (546)
T COG4615 528 ELT 530 (546)
T ss_pred ecc
Confidence 853
No 122
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.6e-46 Score=405.82 Aligned_cols=213 Identities=30% Similarity=0.463 Sum_probs=185.7
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|+|
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGI 80 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 589999999996 46799999999999999999999999999999999999999999999999999887764 678999
Q ss_pred EcCCCCCCc-hhHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 538 VPQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 538 V~Q~~~LF~-gTIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|+|++.||. .|++|||.|+.. ..+. +++.++++..++.++ ......+||||||||+||||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~-----------~~~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGS-----------ERKYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCch-----------hhCChhhCCHHHHHHHHHHHHH
Confidence 999999995 699999998742 1222 334445554444443 3445578999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
+++|++|+||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+ ..||+|+||++|+|++.|+++|+.+..
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999988754 78999999999986 459999999999999999999998753
No 123
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-46 Score=389.37 Aligned_cols=219 Identities=34% Similarity=0.531 Sum_probs=186.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-----p~~G~I~idG~di~~--~~~~~ 530 (709)
.|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.+ .+...
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEEC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 489999999996 4689999999999999999999999999999999999997 489999999999864 44567
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCCC--C-----CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLS--A-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~~--~-----s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+|+.++||+|++.+|+.|++||+.++... . .++++.++++..++++.+ .........+||||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQQR 155 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHHHH
Confidence 88999999999999999999999875321 1 123344455554543211 122345668999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++||||++++|++|||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|+|++.|+++++..
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI 235 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999998778999999999998765 99999999999999999999975
Q ss_pred cc
Q 005205 683 KA 684 (709)
Q Consensus 683 ~~ 684 (709)
..
T Consensus 236 ~~ 237 (251)
T PRK14251 236 AP 237 (251)
T ss_pred CC
Confidence 43
No 124
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2e-46 Score=389.17 Aligned_cols=213 Identities=33% Similarity=0.578 Sum_probs=183.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC-----------
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----------- 527 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~----------- 527 (709)
|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 57999999996 468999999999999999999999999999999999999999999999999997653
Q ss_pred --HHHhhcceEEEcCCCCCCc-hhHHHHHHcCCC---CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCC
Q 005205 528 --LESLRKSIGVVPQDTVLFN-DTIFHNIRYGRL---SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLS 597 (709)
Q Consensus 528 --~~~lR~~i~~V~Q~~~LF~-gTIreNI~~g~~---~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LS 597 (709)
...+|+.++||+|++.+|. .|+.||+.++.. .... +++.++++..++ +..+......||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS 148 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGL-----------ADKADHMPAQLS 148 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhHhhcChhhcC
Confidence 3467899999999999985 799999987521 1222 233444444444 333445557899
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEe
Q 005205 598 GGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQ 674 (709)
Q Consensus 598 GGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~ 674 (709)
||||||++|||||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+. .||+|++|++|++++.
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T TIGR03005 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ 228 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999988753 789999999999985 5999999999999999
Q ss_pred cChHHHhhc
Q 005205 675 GSHDDLLTK 683 (709)
Q Consensus 675 Gth~eLl~~ 683 (709)
|+++++.+.
T Consensus 229 g~~~~~~~~ 237 (252)
T TIGR03005 229 GKPDEIFRQ 237 (252)
T ss_pred CCHHHHhcC
Confidence 999999864
No 125
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-46 Score=379.56 Aligned_cols=203 Identities=31% Similarity=0.543 Sum_probs=178.4
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+|+|++ +++|+|+||+|++| ++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|+.++||
T Consensus 1 i~~~~~~~~~~~-~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRYGK-KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEECC-EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEe
Confidence 579999999964 58999999999999 99999999999999999999999999999999999998877 7789999999
Q ss_pred cCCCCCCch-hHHHHHHcCCC--CCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 539 PQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 539 ~Q~~~LF~g-TIreNI~~g~~--~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
+|++.+|.+ |++||+.+... ..+ ++++.++++..++.++. ++ ....||||||||++|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LS~G~~qrv~la~al~ 146 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-------KK----KIGSLSGGMRRRVGIAQALV 146 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-------hC----chhhCCHHHHHHHHHHHHHh
Confidence 999999986 99999986421 112 34456666666665543 22 23579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEec
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQG 675 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~G 675 (709)
++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999877899999999999986 59999999999999875
No 126
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-46 Score=368.19 Aligned_cols=222 Identities=34% Similarity=0.567 Sum_probs=195.2
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC---HHHhhcc
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT---LESLRKS 534 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~---~~~lR~~ 534 (709)
.|+++||+..||+++++|+||||+|++||+|||+|+||||||||++.|.|+.+|++|+|.++|.++...+ +..+|++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 5899999999998899999999999999999999999999999999999999999999999999998888 6778999
Q ss_pred eEEEcCCCCCCch-hHHHHHHcCCCC-----------CCHH---HHHHHHHHHchHHHHHhCCCCccccccCCCCCCChH
Q 005205 535 IGVVPQDTVLFND-TIFHNIRYGRLS-----------ATEE---EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599 (709)
Q Consensus 535 i~~V~Q~~~LF~g-TIreNI~~g~~~-----------~s~~---ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 599 (709)
|||++|++-|-.. |+.+|+..|.-. .+.+ ...+|++..++.|..- .+-.+||||
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LSGG 151 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLSGG 151 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCCcc
Confidence 9999999999865 999999887531 3333 3456677777766543 467799999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecC
Q 005205 600 EKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGS 676 (709)
Q Consensus 600 QrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gt 676 (709)
|+||++|||||.++|+|++=|||+|+|||++.+.|++.|++.. .|.|+|+.-|.+.+.+. ||||+-|++|+||-.|+
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~ 231 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGP 231 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCC
Confidence 9999999999999999999999999999999999999998764 57899999999998775 99999999999999999
Q ss_pred hHHHhhcccHHHHHHH
Q 005205 677 HDDLLTKAGRYAQLWG 692 (709)
Q Consensus 677 h~eLl~~~g~Y~~l~~ 692 (709)
.+||-+. ...++|.
T Consensus 232 ~~el~~~--~~~~iYg 245 (258)
T COG3638 232 ASELTDE--ALDEIYG 245 (258)
T ss_pred hhhhhHH--HHHHHhc
Confidence 9996532 3444444
No 127
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-46 Score=390.83 Aligned_cols=222 Identities=30% Similarity=0.468 Sum_probs=193.9
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|
T Consensus 11 ~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 11 TFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred eEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 599999999996 4689999999999999999999999999999999999999999999999999998888899999999
Q ss_pred EcCCCCCCch-hHHHHHHcCCC----------CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 005205 538 VPQDTVLFND-TIFHNIRYGRL----------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~----------~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaI 606 (709)
|+|++.+|.+ |+.||+.++.. ...++++.++++..++.+++...| .+||||||||++|
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 158 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRAWI 158 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHHHH
Confidence 9999877654 99999997631 112345677777777766554443 4799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhc
Q 005205 607 ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 607 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+.+|+...
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (265)
T PRK10575 159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRG 238 (265)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcCH
Confidence 9999999999999999999999999999999998753 799999999999985 5999999999999999999998763
Q ss_pred ccHHHHHHH
Q 005205 684 AGRYAQLWG 692 (709)
Q Consensus 684 ~g~Y~~l~~ 692 (709)
..+.+++.
T Consensus 239 -~~~~~~~~ 246 (265)
T PRK10575 239 -ETLEQIYG 246 (265)
T ss_pred -HHHHHHhC
Confidence 34555654
No 128
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-46 Score=384.97 Aligned_cols=208 Identities=31% Similarity=0.464 Sum_probs=178.8
Q ss_pred eEEEEeEEEEecCC---cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH---h
Q 005205 458 SIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---L 531 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~---l 531 (709)
-|+++||+|+|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 48999999999742 57999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cceEEEcCCCCCCch-hHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 532 R-KSIGVVPQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 532 R-~~i~~V~Q~~~LF~g-TIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
| +.++||+|++.+|.. |++||+.++.. ..+. +++.++++..+ ++........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVG-----------LEHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CchhhhCChhhCCHHHHHH
Confidence 3 679999999999975 99999987421 1222 23344444443 3444445567899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhhcCeEEEEeCCEEEEecC
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGS 676 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gt 676 (709)
++||||++.+|+||||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 4799999999999999999999999999998875
No 129
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-46 Score=391.96 Aligned_cols=218 Identities=29% Similarity=0.490 Sum_probs=186.3
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-----p~~G~I~idG~di~~--~~~~~ 530 (709)
-|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+...
T Consensus 21 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (268)
T PRK14248 21 ILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99 (268)
T ss_pred eEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHH
Confidence 599999999996 4679999999999999999999999999999999999865 799999999999865 34567
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCC---CCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL---SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~---~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+|+.++||+|++.+|++|++||+.++.. ... ++.+.++++..++.+.+ .........+||||||||
T Consensus 100 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQQR 172 (268)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHHHH
Confidence 8899999999999999999999987521 111 23344455554443222 123455678999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 252 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFT 252 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999999877899999999999775 599999999999999999999976
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 253 ~ 253 (268)
T PRK14248 253 S 253 (268)
T ss_pred C
Confidence 4
No 130
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-46 Score=388.28 Aligned_cols=218 Identities=32% Similarity=0.481 Sum_probs=186.6
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC--C---CCCEEEECCEeCCCC--CHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--T---HSGSIRIDGQDICEV--TLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~--p---~~G~I~idG~di~~~--~~~~ 530 (709)
-|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||+++... +...
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 5 ILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred eEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 489999999996 4679999999999999999999999999999999999954 6 499999999998643 4567
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCC--CC-----CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~--~~-----s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+|+.++||||++.+|+.|++||+.++.. .. .++++.++++..++.+.+. +........||||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQQR 156 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHHHH
Confidence 8889999999999999999999987521 11 1233444555555543332 33456678999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999999877899999999999875 599999999999999999999976
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 237 ~ 237 (252)
T PRK14239 237 N 237 (252)
T ss_pred C
Confidence 4
No 131
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.6e-46 Score=408.59 Aligned_cols=222 Identities=31% Similarity=0.528 Sum_probs=196.9
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++...++++|||
T Consensus 3 ~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 489999999996 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCC-CchhHHHHHHcCCC----------CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 005205 538 VPQDTVL-FNDTIFHNIRYGRL----------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (709)
Q Consensus 538 V~Q~~~L-F~gTIreNI~~g~~----------~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaI 606 (709)
|+|++.+ |+.|++||+.++.. ..+++.+.++++..++.++..+ ....||||||||++|
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv~I 150 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRVLL 150 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHH
Confidence 9999988 78899999988742 1124457778888887765533 245899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 607 ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 607 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
||||+++|+||||||||++||+.+...+.+.|+++. +++|+|+++|+++.+ +.||+|++|++|++++.|+++|++..
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~- 229 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA- 229 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc-
Confidence 999999999999999999999999999999999885 578999999999998 56999999999999999999999864
Q ss_pred cHHHHHHH
Q 005205 685 GRYAQLWG 692 (709)
Q Consensus 685 g~Y~~l~~ 692 (709)
....++|.
T Consensus 230 ~~l~~~~~ 237 (402)
T PRK09536 230 DTLRAAFD 237 (402)
T ss_pred HHHHHHhC
Confidence 34445553
No 132
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.5e-46 Score=383.66 Aligned_cols=216 Identities=27% Similarity=0.485 Sum_probs=185.5
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHh-hcceEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGV 537 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~l-R~~i~~ 537 (709)
|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |+.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 57899999996 4679999999999999999999999999999999999999999999999999988876654 568999
Q ss_pred EcCCCCCCch-hHHHHHHcCCCC--CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 538 VPQDTVLFND-TIFHNIRYGRLS--ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~~--~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
++|++.+|.+ |++||+.++.+. ...++.. ..+++.++.+ |++.........||||||||++||||++.+|
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 152 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATNP 152 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999987 999999876321 2222221 1233445544 5665566677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhh
Q 005205 615 PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 153 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 153 KFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999998875 4789999999997655 599999999999999999999865
No 133
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-46 Score=387.70 Aligned_cols=219 Identities=33% Similarity=0.529 Sum_probs=188.7
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCC--CCHH
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLE 529 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-----~~G~I~idG~di~~--~~~~ 529 (709)
+.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+..
T Consensus 2 ~~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 2 GKISVKDLDLFYGD-FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred CeEEEEEEEEEECC-ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 36999999999964 5799999999999999999999999999999999999863 69999999999875 4566
Q ss_pred HhhcceEEEcCCCCCCchhHHHHHHcCCC--CC-----CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHH
Q 005205 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (709)
Q Consensus 530 ~lR~~i~~V~Q~~~LF~gTIreNI~~g~~--~~-----s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQ 602 (709)
.+|+.++||+|++.+|+.|++|||.++.. .. .++++.++++.+++.+.+. ........+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 153 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQQ 153 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHHH
Confidence 78999999999999999999999987631 11 1334555555555544332 2345567799999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHh
Q 005205 603 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 603 RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl 681 (709)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999998755 9999999999999999999987
Q ss_pred hc
Q 005205 682 TK 683 (709)
Q Consensus 682 ~~ 683 (709)
..
T Consensus 234 ~~ 235 (250)
T PRK14240 234 TN 235 (250)
T ss_pred hC
Confidence 53
No 134
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-46 Score=389.52 Aligned_cols=218 Identities=29% Similarity=0.492 Sum_probs=187.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC--C---CCCEEEECCEeCCC--CCHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--T---HSGSIRIDGQDICE--VTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~--p---~~G~I~idG~di~~--~~~~~ 530 (709)
-|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|++||+++.. .+...
T Consensus 12 ~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 90 (259)
T PRK14274 12 VYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE 90 (259)
T ss_pred eEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence 589999999996 4679999999999999999999999999999999999997 3 59999999999864 45567
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCCC---CCHH----HHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLS---ATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~~---~s~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+|+.++||||++.+|+.|++||+.++... .+++ ++.++++..++.+++. ..+......||||||||
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~qr 163 (259)
T PRK14274 91 LRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQQR 163 (259)
T ss_pred HhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHHH
Confidence 88999999999999999999999876321 1222 2344455555544332 23455677999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++++.+
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 243 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFS 243 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 9999999999999999999999999999999999999877899999999999876 599999999999999999999875
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 244 ~ 244 (259)
T PRK14274 244 N 244 (259)
T ss_pred C
Confidence 4
No 135
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.7e-46 Score=404.19 Aligned_cols=212 Identities=34% Similarity=0.541 Sum_probs=185.3
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+.+. .++.|+|
T Consensus 2 ~L~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGR-TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEE
Confidence 4899999999964 679999999999999999999999999999999999999999999999999987654 4678999
Q ss_pred EcCCCCCCc-hhHHHHHHcCCC------CCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 005205 538 VPQDTVLFN-DTIFHNIRYGRL------SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (709)
Q Consensus 538 V~Q~~~LF~-gTIreNI~~g~~------~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaI 606 (709)
|+|++.+|. .|++|||.|+.. ..+ ++++.++++..++.++..+ ....||||||||++|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----------YPAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHHH
Confidence 999999997 599999998732 122 2345556666666554433 346899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhc
Q 005205 607 ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 607 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+..+
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999998764 689999999999865 4999999999999999999999865
No 136
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-46 Score=388.14 Aligned_cols=218 Identities=33% Similarity=0.541 Sum_probs=187.1
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC---CCC--CCCEEEECCEeCCCC--CHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS---FDT--HSGSIRIDGQDICEV--TLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl---y~p--~~G~I~idG~di~~~--~~~~ 530 (709)
.|+++||++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+ ++| ++|+|.+||+++.+. +...
T Consensus 3 ~l~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 3 KIDARDVNFWYGD-FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred EEEEEEEEEEECC-EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 5899999999964 6799999999999999999999999999999999997 454 589999999998764 3567
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCC--CC-----CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~--~~-----s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+|+.++||||++.+|+.|++|||.++.. .. .++++.++++..++.+++ ++...+....||||||||
T Consensus 82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQQR 154 (250)
T ss_pred HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHHHH
Confidence 8899999999999999999999987531 11 123344555555544333 234456778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999999999888899999999999885 599999999999999999999986
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 235 ~ 235 (250)
T PRK14245 235 N 235 (250)
T ss_pred C
Confidence 4
No 137
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-46 Score=389.91 Aligned_cols=219 Identities=32% Similarity=0.472 Sum_probs=190.8
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHH
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLE 529 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-----p~~G~I~idG~di~~--~~~~ 529 (709)
..|+++||+|+|+ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||.++.+ .+..
T Consensus 19 ~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 19 IALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred eEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 4699999999995 5789999999999999999999999999999999999997 589999999999864 3466
Q ss_pred HhhcceEEEcCCCCCCchhHHHHHHcCCCC--C-C----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHH
Q 005205 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLS--A-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (709)
Q Consensus 530 ~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~--~-s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQ 602 (709)
.+|+.|+||||++.+|..|++|||.++... . + ++++.++++..++.+++ ++.+......|||||||
T Consensus 98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~q 170 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQQQ 170 (267)
T ss_pred HHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHHHH
Confidence 789999999999999999999999886321 1 1 23455556666665444 23456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHh
Q 005205 603 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 603 RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl 681 (709)
|++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999999877899999999999875 59999999999999999999997
Q ss_pred hc
Q 005205 682 TK 683 (709)
Q Consensus 682 ~~ 683 (709)
+.
T Consensus 251 ~~ 252 (267)
T PRK14237 251 TN 252 (267)
T ss_pred cC
Confidence 64
No 138
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.3e-46 Score=378.33 Aligned_cols=210 Identities=29% Similarity=0.461 Sum_probs=190.2
Q ss_pred EEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH----HHhhcce
Q 005205 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL----ESLRKSI 535 (709)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~----~~lR~~i 535 (709)
.+.|+.|+|+++.++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++. ...|+.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 578999999866789999999999999999999999999999999999999999999999999877653 3467789
Q ss_pred EEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 536 ~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
+|++|++.+|+.|++|||.++.+ .++++..++++..++.+++..+|.|++|.++....+||||||||++||||++++|+
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998754 35667778888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH--HHHHhc-CCCeEEEEecCchHHhhcCeEEEEeCCE
Q 005205 616 ILLCDEATSALDSTTEAEILN--ALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGK 670 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~--~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl~~G~ 670 (709)
+|||||||++||+.+.+.+.+ .++.+. .++|+|++||+++.++.||+|++|++|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999998887 444443 3689999999999999999999999984
No 139
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-46 Score=392.49 Aligned_cols=216 Identities=32% Similarity=0.541 Sum_probs=192.1
Q ss_pred ceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCC---CEEEECCEeCCCCCHHHhh
Q 005205 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS---GSIRIDGQDICEVTLESLR 532 (709)
Q Consensus 457 g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~---G~I~idG~di~~~~~~~lR 532 (709)
..|+++|++|+|++ .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 35999999999974 3579999999999999999999999999999999999999998 8999999999888888889
Q ss_pred cceEEEcCCC--CCCchhHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 533 KSIGVVPQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 533 ~~i~~V~Q~~--~LF~gTIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
++++||+|++ .+++.|+.|||.++.+ ..+. +++.++++..++.++....| .+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999998 4678999999988632 2333 33566777777776655544 69999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhh
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988753 789999999999999999999999999999999998875
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
No 140
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.7e-46 Score=380.07 Aligned_cols=201 Identities=36% Similarity=0.582 Sum_probs=177.0
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH---Hhhcce
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLRKSI 535 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~---~lR~~i 535 (709)
|+++|++++|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++.. .+|+.+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 78999999996456899999999999999999999999999999999999999999999999999887643 478899
Q ss_pred EEEcCCCCCCc-hhHHHHHHcCC------CCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 536 GVVPQDTVLFN-DTIFHNIRYGR------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 536 ~~V~Q~~~LF~-gTIreNI~~g~------~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
+|++|++.+|. .|++||+.++. +...++++.++++..++.+++...| ..||||||||++|||
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAIAR 150 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 69999998752 1122456677777777766555443 489999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCE
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGK 670 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~ 670 (709)
||+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999998875 47999999999999886 89999999985
No 141
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-46 Score=387.66 Aligned_cols=223 Identities=28% Similarity=0.530 Sum_probs=194.1
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+++...+++.++||
T Consensus 3 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 3 LRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 78999999996 46899999999999999999999999999999999999999999999999999988888889999999
Q ss_pred cCCCCCCch-hHHHHHHcCCCC----------CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 005205 539 PQDTVLFND-TIFHNIRYGRLS----------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (709)
Q Consensus 539 ~Q~~~LF~g-TIreNI~~g~~~----------~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIA 607 (709)
||++.+|.+ |+.||+.++... ..++++.++++..++.+... .....||||||||++||
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la 150 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRAFLA 150 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHHHHH
Confidence 999999876 999999986311 11334556666666654433 34568999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhccc
Q 005205 608 RAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTKAG 685 (709)
Q Consensus 608 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~~g 685 (709)
||++.+|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+.+++.. ..
T Consensus 151 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~-~~ 229 (255)
T PRK11231 151 MVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT-PG 229 (255)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC-HH
Confidence 99999999999999999999999999999998875 4799999999999876 599999999999999999999876 35
Q ss_pred HHHHHHHhh
Q 005205 686 RYAQLWGQQ 694 (709)
Q Consensus 686 ~Y~~l~~~q 694 (709)
.+.+.+..+
T Consensus 230 ~~~~~~~~~ 238 (255)
T PRK11231 230 LLRTVFDVE 238 (255)
T ss_pred HHHHHhCCC
Confidence 567777544
No 142
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-46 Score=389.84 Aligned_cols=217 Identities=29% Similarity=0.491 Sum_probs=186.6
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCCCC--HHHh
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICEVT--LESL 531 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-----p~~G~I~idG~di~~~~--~~~l 531 (709)
=+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+.+ ...+
T Consensus 6 ~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 47899999996 4689999999999999999999999999999999999986 47999999999987653 3467
Q ss_pred hcceEEEcCCCCCCchhHHHHHHcCCC--CC------CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 532 RKSIGVVPQDTVLFNDTIFHNIRYGRL--SA------TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 532 R~~i~~V~Q~~~LF~gTIreNI~~g~~--~~------s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
|+.++||||++.+|.+|++|||.++.. +. .++++.++++..++.+++ .+.+...+.+||||||||
T Consensus 85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~qr 157 (251)
T PRK14244 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQQR 157 (251)
T ss_pred hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHHHH
Confidence 889999999999999999999987621 11 123445555655554332 234456678999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999988778999999999999864 99999999999999999999986
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 238 ~ 238 (251)
T PRK14244 238 N 238 (251)
T ss_pred C
Confidence 4
No 143
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3e-46 Score=379.46 Aligned_cols=205 Identities=29% Similarity=0.510 Sum_probs=176.4
Q ss_pred EEEEeEEEEecCC---cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
|+++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 7899999999742 179999999999999999999999999999999999999999999999999976 456788999
Q ss_pred EEEcCCCCCCch-hHHHHHHcCCC--CCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 536 GVVPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 536 ~~V~Q~~~LF~g-TIreNI~~g~~--~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
+||||++.+|.. |++||+.+... ..+ ++++.++++..++.+ .+.....+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE-----------LLDRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HHhhhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999976421 122 233444455444443 344566789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEec
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 675 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~G 675 (709)
|++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999875 47999999999998765 9999999999999865
No 144
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3e-46 Score=376.67 Aligned_cols=203 Identities=26% Similarity=0.424 Sum_probs=180.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+. ..+|+.++||
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEe
Confidence 57999999995 46899999999999999999999999999999999999999999999999998765 5678899999
Q ss_pred cCCCCCC-chhHHHHHHcCC--CCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 539 PQDTVLF-NDTIFHNIRYGR--LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 539 ~Q~~~LF-~gTIreNI~~g~--~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
||++.+| +.|++||+.++. ...+++++.++++..++.+...+ ....||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999888 579999998753 22356677788888887765443 346899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEec
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 675 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~G 675 (709)
+|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+.. ||+|++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999998875 47999999999998864 9999999999999875
No 145
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-45 Score=388.33 Aligned_cols=222 Identities=29% Similarity=0.473 Sum_probs=189.2
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCCCC-HHHh
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEVT-LESL 531 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-----~~G~I~idG~di~~~~-~~~l 531 (709)
-|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+.+ ...+
T Consensus 21 ~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (276)
T PRK14271 21 AMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEF 99 (276)
T ss_pred EEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHH
Confidence 589999999996 46899999999999999999999999999999999999986 7999999999998764 4578
Q ss_pred hcceEEEcCCCCCCchhHHHHHHcCCC---CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 532 RKSIGVVPQDTVLFNDTIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 532 R~~i~~V~Q~~~LF~gTIreNI~~g~~---~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
|+.++||+|++.+|+.|++|||.++.. ..+++++.+.+.. .++.+ .+++.+++.+.....+||||||||++|||
T Consensus 100 ~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~-~l~~~--~l~~~~~~~l~~~~~~LSgGq~qrl~LAr 176 (276)
T PRK14271 100 RRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQA-RLTEV--GLWDAVKDRLSDSPFRLSGGQQQLLCLAR 176 (276)
T ss_pred hhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHH-HHHHc--CCCchhhhHhhCCcccCCHHHHHHHHHHH
Confidence 899999999999999999999987631 1344444332211 01111 23333345566778899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|+|++.|+++++.+.
T Consensus 177 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 177 TLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998777999999999998765 999999999999999999999875
No 146
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.4e-46 Score=378.93 Aligned_cols=202 Identities=36% Similarity=0.550 Sum_probs=174.5
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH---HHhhcce
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESLRKSI 535 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~---~~lR~~i 535 (709)
|+++||+++|++.+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. ..+|+.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 5789999999754679999999999999999999999999999999999999999999999999988764 3578899
Q ss_pred EEEcCCCCCCc-hhHHHHHHcCCC--CCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 536 GVVPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 536 ~~V~Q~~~LF~-gTIreNI~~g~~--~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
+||+|++.+|. .|++||+.++.. ..+ ++++.++++..++.+.... ...+||||||||++|||
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRA-----------LPAELSGGEQQRVAIAR 149 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHH
Confidence 99999999998 499999987531 122 2345555666565554433 33589999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEE
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKV 671 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~I 671 (709)
||+++|+|||||||||+||+++.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999874 57999999999999885 899999999975
No 147
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=4.3e-46 Score=389.43 Aligned_cols=222 Identities=27% Similarity=0.424 Sum_probs=186.0
Q ss_pred EEEEeEEEEecC--------CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH
Q 005205 459 IQFDNVHFSYLT--------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES 530 (709)
Q Consensus 459 I~f~nVsF~Y~~--------~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~ 530 (709)
|+++||+|+|++ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 789999999963 367999999999999999999999999999999999999999999999999998887643
Q ss_pred ---hhcceEEEcCCCC--CC-chhHHHHHHcCCC---CCC----HHHHHHHHHHHchHHHHHhCCCCcc-ccccCCCCCC
Q 005205 531 ---LRKSIGVVPQDTV--LF-NDTIFHNIRYGRL---SAT----EEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKL 596 (709)
Q Consensus 531 ---lR~~i~~V~Q~~~--LF-~gTIreNI~~g~~---~~s----~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~L 596 (709)
+|+.|+||+|++. ++ ..|++|||.++.. ... ++++.++++.. |++ .........|
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~L 151 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMV-----------GLRSEDADKLPRQL 151 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCChhhhhCChhhC
Confidence 6788999999983 44 4799999975321 111 22333333333 343 2345567799
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEE
Q 005205 597 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIE 673 (709)
Q Consensus 597 SGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive 673 (709)
|||||||++|||||+.+|+||||||||++||+++.+.+.+.|+++.+ ++|+|+|||++..+. .||+|++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999998754 799999999999987 599999999999999
Q ss_pred ecChHHHhhc-ccHHHHHH
Q 005205 674 QGSHDDLLTK-AGRYAQLW 691 (709)
Q Consensus 674 ~Gth~eLl~~-~g~Y~~l~ 691 (709)
.|++++++.. +..|+++.
T Consensus 232 ~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 232 ECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred ECCHHHHcCCCCHHHHHHH
Confidence 9999999874 44454453
No 148
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.5e-46 Score=383.16 Aligned_cols=212 Identities=31% Similarity=0.523 Sum_probs=181.5
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH-hhcceEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIGV 537 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~-lR~~i~~ 537 (709)
|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... ++++++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 57999999996 468999999999999999999999999999999999999999999999999998887655 4678999
Q ss_pred EcCCCCCCch-hHHHHHHcCCCCC--CHHHH-HHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 538 VPQDTVLFND-TIFHNIRYGRLSA--TEEEV-YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~~~--s~~ei-~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
+||++.+|.. |++||+.++.... .+++. .++++.. ++++.........||||||||++|||||+++
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~----------~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELF----------PVLKEMLGRRGGDLSGGQQQQLAIARALVTR 149 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHH----------HhHHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999986 9999998764221 11111 2222221 2233334556678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHh
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl 681 (709)
|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 150 PKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 999999999999999999999999988764 7899999999999885 9999999999999999999983
No 149
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-46 Score=384.28 Aligned_cols=218 Identities=29% Similarity=0.504 Sum_probs=182.3
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC------CCCHHHh
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC------EVTLESL 531 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~------~~~~~~l 531 (709)
.|+++||+|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. ..+...+
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 388999999996 468999999999999999999999999999999999999999999999999873 2345678
Q ss_pred hcceEEEcCCCCCCch-hHHHHHHcCC---CCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 005205 532 RKSIGVVPQDTVLFND-TIFHNIRYGR---LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (709)
Q Consensus 532 R~~i~~V~Q~~~LF~g-TIreNI~~g~---~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIA 607 (709)
|++|+||||++.+|.+ |++|||.++. ...+.++..+ .+.+++..+ |++..+.....+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA-----RAEKLLERL--RLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHH
Confidence 8999999999999975 9999997531 1122222111 123333333 344444445569999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 608 RAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 608 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||++++|+||||||||++||+++...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 231 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQP 231 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcCc
Confidence 99999999999999999999999999999999875 47999999999999865 999999999999999999987643
No 150
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-46 Score=389.49 Aligned_cols=217 Identities=34% Similarity=0.524 Sum_probs=188.8
Q ss_pred eEEEEeEEEEecCC-cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 458 SIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
.|+++||+|+|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 59999999999753 46999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EEcCCCC--CCchhHHHHHHcCCCC--CCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 537 VVPQDTV--LFNDTIFHNIRYGRLS--ATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 537 ~V~Q~~~--LF~gTIreNI~~g~~~--~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
||+|+|. ++..|+++|+.++... .+. +++.++++..++.++.. ....+||||||||++|||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAIAG 155 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHHH
Confidence 9999984 5567899999886321 222 33445555555544332 345689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhccc
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAG 685 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g 685 (709)
|++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+..||+|++|++|+|++.|+++++.....
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 234 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAE 234 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCHH
Confidence 99999999999999999999999999999998753 789999999999998999999999999999999999977543
No 151
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.3e-46 Score=379.88 Aligned_cols=203 Identities=32% Similarity=0.519 Sum_probs=173.3
Q ss_pred EEEEeEEEEecCC---cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH---hh
Q 005205 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR 532 (709)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~---lR 532 (709)
|+++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 7899999999742 47999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -cceEEEcCCCCCCc-hhHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 533 -KSIGVVPQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 533 -~~i~~V~Q~~~LF~-gTIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
+.++||+|++.+|. .|++||+.++.. ..+. +++.++++..+ ++.........||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVG-----------LEHRINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHH
Confidence 68999999999995 599999987421 1121 22333344333 44334445578999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhhcCeEEEEeCCEEE
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQCDEIIVLENGKVI 672 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~aD~Iivl~~G~Iv 672 (709)
+|||||+++|+||||||||++||+++.+.+.+.|+++. .++|+|+|||+++.+..||+|++|++|+|+
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998875 378999999999999999999999999986
No 152
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-46 Score=387.83 Aligned_cols=218 Identities=34% Similarity=0.532 Sum_probs=186.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCCC--CHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-----~~G~I~idG~di~~~--~~~~ 530 (709)
.|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+. +...
T Consensus 12 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 12 QIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 699999999996 46799999999999999999999999999999999999985 799999999998654 3456
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCC--CCCHH----HHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~--~~s~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
+|+.++||+|++.+|+.|++|||.++.. ..+.+ ++.++++.+++.+++ +.........||||||||+
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qrv 163 (258)
T PRK14268 91 LRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQRL 163 (258)
T ss_pred HhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHHHH
Confidence 7889999999999999999999987531 12222 344455555543221 2223455678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
+|||||+.+|+||||||||++||+++...+.+.|+++.+++|+|+|||++..+.. ||+|++|++|+|++.|+++++.+.
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999988778999999999998855 999999999999999999999753
No 153
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-46 Score=380.92 Aligned_cols=203 Identities=30% Similarity=0.446 Sum_probs=175.1
Q ss_pred EEEEeEEEEecCC---cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
|+++|++++|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 5789999999742 589999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEcCCCCCCc-hhHHHHHHcCCC--CC----CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 536 GVVPQDTVLFN-DTIFHNIRYGRL--SA----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 536 ~~V~Q~~~LF~-gTIreNI~~g~~--~~----s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
+||||++.+|. .|++|||.++.. .. .++++.++++..++.++..+. ..+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAY-----------PHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHHH
Confidence 99999999998 699999987521 11 133455566666665544443 3589999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHh-hcCeEEEEe--CCEEEEecCh
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVLE--NGKVIEQGSH 677 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~-~aD~Iivl~--~G~Ive~Gth 677 (709)
||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|+ +|+|+|.++-
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999998874 3799999999999765 599999999 7999998874
No 154
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.1e-46 Score=377.94 Aligned_cols=203 Identities=31% Similarity=0.531 Sum_probs=174.7
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. +++++||
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEEE
Confidence 579999999964 6899999999999999999999999999999999999999999999999999776543 5689999
Q ss_pred cCCCCCCc-hhHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 539 PQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 539 ~Q~~~LF~-gTIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
+|++.+|. .|++||+.++.. ..+. +++.++++..++.+++. .....||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-----------RKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 99999985 699999987521 1222 23444555555554433 334689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEec
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 675 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~G 675 (709)
++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||++..+.. ||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999998875 37999999999998775 9999999999999876
No 155
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-46 Score=397.57 Aligned_cols=213 Identities=31% Similarity=0.507 Sum_probs=192.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+|+||+.+|. +..+++|+||+|++||+++++|||||||||++++|+||.+|++|+|.+||.|+.+++++ ++.|++
T Consensus 5 ~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig~ 81 (352)
T COG3842 5 ALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGM 81 (352)
T ss_pred eEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccce
Confidence 699999999997 67899999999999999999999999999999999999999999999999999998865 578999
Q ss_pred EcCCCCCCc-hhHHHHHHcCCC---CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 005205 538 VPQDTVLFN-DTIFHNIRYGRL---SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 538 V~Q~~~LF~-gTIreNI~~g~~---~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
|+|+--||. -||+|||.||-. ...+ +.+.++++..++.++-.+.| ..|||||+||+|||||
T Consensus 82 VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALARA 150 (352)
T COG3842 82 VFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALARA 150 (352)
T ss_pred eecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHHH
Confidence 999999995 699999999943 1222 46788999999988777665 5799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCch-HHhhcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 610 FLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLT-TAMQCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 610 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRls-ti~~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
|..+|++|+||||.||||..--..++..|+++. .|.|.|+|||+-. .+..+|||+||++|+|.+.||++|+....
T Consensus 151 L~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred hhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 999999999999999999999999998887664 4789999999965 57779999999999999999999999753
No 156
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=6.5e-46 Score=403.18 Aligned_cols=212 Identities=31% Similarity=0.542 Sum_probs=189.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.|+|
T Consensus 14 ~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 90 (375)
T PRK09452 14 LVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNT 90 (375)
T ss_pred eEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 599999999996 46799999999999999999999999999999999999999999999999999887754 578999
Q ss_pred EcCCCCCCch-hHHHHHHcCCC--CCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 538 VPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~--~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|+|++.||.. |++|||.|+.. ..+ ++++.++++..++.++..+.| ..||||||||+||||||
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARAV 159 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999965 99999998742 122 345667777778877776666 48999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
+++|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||++..+ ..||+|++|++|+|++.|+++|+++.
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999998764 79999999999975 46999999999999999999999875
No 157
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-46 Score=384.11 Aligned_cols=218 Identities=32% Similarity=0.539 Sum_probs=188.2
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-----CCEEEECCEeCCC--CCHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-----SGSIRIDGQDICE--VTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~-----~G~I~idG~di~~--~~~~~ 530 (709)
.|+++||+|+|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+ .+...
T Consensus 4 ~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 4 KIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred eEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 589999999996 467999999999999999999999999999999999999997 6999999999865 34567
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCC--CC-CH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-TE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~--~~-s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+|+.++||||++.+|+.|++|||.++.. .. .. +.+.++++..++.+++ .........+||||||||
T Consensus 83 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQQR 155 (251)
T ss_pred hhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHHHH
Confidence 8999999999999999999999987631 11 11 2333444444544433 234566788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988778999999999999876 79999999999999999999875
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 236 ~ 236 (251)
T PRK14249 236 R 236 (251)
T ss_pred C
Confidence 4
No 158
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.8e-46 Score=382.91 Aligned_cols=217 Identities=31% Similarity=0.510 Sum_probs=184.5
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC--CHHHhhcceE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV--TLESLRKSIG 536 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~--~~~~lR~~i~ 536 (709)
|+++|++++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+. +...+|+.++
T Consensus 2 l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 78999999996 46799999999999999999999999999999999999999999999999999864 3467788999
Q ss_pred EEcCCCCCCc-hhHHHHHHcCCC---CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 005205 537 VVPQDTVLFN-DTIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (709)
Q Consensus 537 ~V~Q~~~LF~-gTIreNI~~g~~---~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~ 612 (709)
|++|++.+|. .|++||+.++.. ..+.++..+ .+++.++.+ |++.........||||||||++||||+++
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~ 153 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARALAV 153 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHHhc
Confidence 9999999886 599999987531 122222211 122334433 44444455567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 613 APPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 613 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
+|++|||||||++||+++.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|++++.|+++++++.
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 154 KPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999998875 47999999999999864 999999999999999999998764
No 159
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.6e-45 Score=381.91 Aligned_cols=217 Identities=33% Similarity=0.528 Sum_probs=184.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC--------HHH
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT--------LES 530 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~--------~~~ 530 (709)
|+++||+++|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||+++...+ ...
T Consensus 4 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 4 IEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred EEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 89999999996 457999999999999999999999999999999999999999999999999987542 356
Q ss_pred hhcceEEEcCCCCCCc-hhHHHHHHcCC---CCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 005205 531 LRKSIGVVPQDTVLFN-DTIFHNIRYGR---LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~-gTIreNI~~g~---~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaI 606 (709)
+|+.++||||++.+|. .|++||+.++. .....++..+. +++.++.+ |++.........||||||||++|
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv~l 155 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRVAI 155 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHHHH
Confidence 7889999999999986 69999998742 11222222221 22334433 44444455678999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 607 ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 607 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 156 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 156 ARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998875 47899999999999865 999999999999999999998754
No 160
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-46 Score=377.92 Aligned_cols=209 Identities=26% Similarity=0.482 Sum_probs=181.0
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...+|+.++||
T Consensus 1 i~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEEC-CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEEe
Confidence 57999999996 46799999999999999999999999999999999999999999999999998763 35778899999
Q ss_pred cCCCCCCch-hHHHHHHcCCC--CC----CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 539 PQDTVLFND-TIFHNIRYGRL--SA----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 539 ~Q~~~LF~g-TIreNI~~g~~--~~----s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
||++.+|.. |++||+.++.. .. .++++.++++..++.++.... ...||||||||++||||++
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~al~ 147 (220)
T cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARSLV 147 (220)
T ss_pred cCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHHHh
Confidence 999999875 99999987421 11 133456666666666544332 3589999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHH
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 680 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eL 680 (709)
.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999988753 7899999999998765 999999999999999998775
No 161
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=8.4e-46 Score=385.60 Aligned_cols=216 Identities=34% Similarity=0.524 Sum_probs=184.6
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC----------
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV---------- 526 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~---------- 526 (709)
+.|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 4699999999996 46899999999999999999999999999999999999999999999999998642
Q ss_pred ---CHHHhhcceEEEcCCCCCCch-hHHHHHHcCC---CCCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCC
Q 005205 527 ---TLESLRKSIGVVPQDTVLFND-TIFHNIRYGR---LSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (709)
Q Consensus 527 ---~~~~lR~~i~~V~Q~~~LF~g-TIreNI~~g~---~~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~ 595 (709)
....+|+.++||||++.+|.. |++||+.++. ..... +++.++++..++.+.. .......
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~ 152 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYPVH 152 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCccc
Confidence 135678899999999999974 9999998642 11222 2334444444443322 1445679
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEE
Q 005205 596 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIE 673 (709)
Q Consensus 596 LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive 673 (709)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 232 (257)
T PRK10619 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 232 (257)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999875 47999999999999986 99999999999999
Q ss_pred ecChHHHhhc
Q 005205 674 QGSHDDLLTK 683 (709)
Q Consensus 674 ~Gth~eLl~~ 683 (709)
.|+++++.+.
T Consensus 233 ~~~~~~~~~~ 242 (257)
T PRK10619 233 EGAPEQLFGN 242 (257)
T ss_pred eCCHHHhhhC
Confidence 9999999764
No 162
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=383.64 Aligned_cols=219 Identities=28% Similarity=0.474 Sum_probs=188.0
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC--C---CCCEEEECCEeCCCC--CHH
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--T---HSGSIRIDGQDICEV--TLE 529 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~--p---~~G~I~idG~di~~~--~~~ 529 (709)
+.|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++... +..
T Consensus 3 ~~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 4699999999996 4679999999999999999999999999999999999986 4 699999999998653 455
Q ss_pred HhhcceEEEcCCCCCCc-hhHHHHHHcCCC--C-CC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHH
Q 005205 530 SLRKSIGVVPQDTVLFN-DTIFHNIRYGRL--S-AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEK 601 (709)
Q Consensus 530 ~lR~~i~~V~Q~~~LF~-gTIreNI~~g~~--~-~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQr 601 (709)
.+|+.++||||++.+|. .|++|||.++.. . .+ ++++.++++..++.+++.. .......+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 154 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGGQQ 154 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHHHH
Confidence 78999999999999998 599999987421 1 11 2344555666665544432 23446779999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHH
Q 005205 602 QRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDL 680 (709)
Q Consensus 602 QRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eL 680 (709)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++|+
T Consensus 155 qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 155 QRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999988899999999999985 5999999999999999999999
Q ss_pred hhc
Q 005205 681 LTK 683 (709)
Q Consensus 681 l~~ 683 (709)
...
T Consensus 235 ~~~ 237 (252)
T PRK14256 235 FTT 237 (252)
T ss_pred HhC
Confidence 754
No 163
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-46 Score=404.14 Aligned_cols=212 Identities=29% Similarity=0.466 Sum_probs=185.0
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.|+|
T Consensus 3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVGM 79 (369)
T ss_pred EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEEE
Confidence 489999999996 46799999999999999999999999999999999999999999999999999877653 578999
Q ss_pred EcCCCCCCch-hHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 538 VPQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|+|++.+|.. |++|||.|+.. ..+. +++.++++..++.++..+. ...||||||||++|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~-----------~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999964 99999998632 1222 3455666666665544433 358999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhc
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999988753 789999999999765 5999999999999999999999864
No 164
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=8.2e-46 Score=382.30 Aligned_cols=222 Identities=23% Similarity=0.396 Sum_probs=186.9
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHh-hcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~l-R~~i~ 536 (709)
-|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.... |+.++
T Consensus 2 ~i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFDG-FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 3799999999964 679999999999999999999999999999999999999999999999999988876654 56799
Q ss_pred EEcCCCCCCch-hHHHHHHcCCCCCCH--HH---HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 537 VVPQDTVLFND-TIFHNIRYGRLSATE--EE---VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~~~~s~--~e---i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|++|++.+|.+ |++||+.++...... .. .........++++++.+ |++.........||||||||++||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999987 999999886421000 00 00001112234444443 455455566779999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhh
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
+.+|++||||||||+||+++.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 9999999999999999999999999999998778999999999999875 99999999999999999999875
No 165
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=6.4e-46 Score=398.13 Aligned_cols=225 Identities=28% Similarity=0.472 Sum_probs=188.2
Q ss_pred eEEEEeEEEEecC------------CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC
Q 005205 458 SIQFDNVHFSYLT------------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (709)
Q Consensus 458 ~I~f~nVsF~Y~~------------~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~ 525 (709)
-|+++||+++|+. ..++++|+||+|++||++||||+||||||||+++|+|+++|++|+|++||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 4899999999962 2469999999999999999999999999999999999999999999999999999
Q ss_pred CCHHH---hhcceEEEcCCC--CCC-chhHHHHHHcC----CCCCCHHHHHH----HHHHHchHHHHHhCCCCccccccC
Q 005205 526 VTLES---LRKSIGVVPQDT--VLF-NDTIFHNIRYG----RLSATEEEVYD----AARRAAIHDTIMNFPAKYSTVVGE 591 (709)
Q Consensus 526 ~~~~~---lR~~i~~V~Q~~--~LF-~gTIreNI~~g----~~~~s~~ei~~----A~~~a~l~~~I~~Lp~G~dT~vGe 591 (709)
++.++ +|++|+||+|+| .|| ..||.|||.++ .+..+.++..+ +++..++. | .....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~------~----~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL------P----NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC------h----HHhcC
Confidence 87654 678999999998 477 57999999753 12244444433 33333331 1 12344
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeC
Q 005205 592 RGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLEN 668 (709)
Q Consensus 592 ~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~ 668 (709)
....||||||||++|||||+.+|++||+|||||+||..+.+.|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5578999999999999999999999999999999999999999999998764 7899999999999975 999999999
Q ss_pred CEEEEecChHHHhhc-ccHHHH-HHH
Q 005205 669 GKVIEQGSHDDLLTK-AGRYAQ-LWG 692 (709)
Q Consensus 669 G~Ive~Gth~eLl~~-~g~Y~~-l~~ 692 (709)
|+|||.|+.+++++. ...|.+ ++.
T Consensus 238 G~ive~g~~~~i~~~~~~py~~~l~~ 263 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTKALMS 263 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHHHHHh
Confidence 999999999999864 334644 444
No 166
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-46 Score=381.34 Aligned_cols=219 Identities=28% Similarity=0.450 Sum_probs=183.9
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH-hhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~-lR~~i~ 536 (709)
-|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++... +|+.++
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 489999999996 468999999999999999999999999999999999999999999999999998887654 678899
Q ss_pred EEcCCCCCCch-hHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 537 VVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
||+|++.+|.+ |++||+.++....+.++..+.+ ++.+..++...++ .......||||||||++||||++++|+
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPRLHER-RIQRAGTMSGGEQQMLAIGRALMSQPR 157 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHHHHHH-HhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 99999999985 9999998864322222222221 2222222211121 233567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||||||||++||+++.+.+.+.|+++. +++|+|++||+++.+ +.||+|++|++|+|++.|+++++...
T Consensus 158 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999998875 479999999999865 56999999999999999999999753
No 167
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=5.8e-46 Score=402.18 Aligned_cols=213 Identities=29% Similarity=0.505 Sum_probs=187.0
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCC--CEEEECCEeCCCCCHHHhhcc
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS--GSIRIDGQDICEVTLESLRKS 534 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~--G~I~idG~di~~~~~~~lR~~ 534 (709)
+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+||.++.+.+. .++.
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA-NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRG 80 (362)
T ss_pred eEEEEEEEEEEECC-eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCC
Confidence 57999999999964 679999999999999999999999999999999999999999 999999999987765 4678
Q ss_pred eEEEcCCCCCCch-hHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 005205 535 IGVVPQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (709)
Q Consensus 535 i~~V~Q~~~LF~g-TIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIA 607 (709)
|+||+|++.||.. |++|||.|+.. ..+. +++.++++..++.++..+.| .+||||||||+|||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999965 99999998631 1232 34555666666665555444 58999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhc
Q 005205 608 RAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN---NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 608 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~---~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
|||+++|++|+||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|++.|+.+|+.+.
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999988764 689999999999864 5999999999999999999999875
No 168
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-46 Score=384.39 Aligned_cols=218 Identities=32% Similarity=0.525 Sum_probs=188.7
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCCC--CHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-----~~G~I~idG~di~~~--~~~~ 530 (709)
-|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +...
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 489999999996 46899999999999999999999999999999999999984 899999999998753 3456
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCC--C-C----CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--S-A----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~--~-~----s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+|+.++||+|++.+|..|++||+.++.. . . .++++.++++..++++.+. +.......+||||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQQR 154 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHHHH
Confidence 7889999999999999999999987521 1 1 1234555666666654332 23456778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999999999999999877899999999999765 599999999999999999999986
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 235 ~ 235 (250)
T PRK14262 235 R 235 (250)
T ss_pred C
Confidence 4
No 169
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=9.9e-46 Score=387.41 Aligned_cols=223 Identities=27% Similarity=0.446 Sum_probs=187.3
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH---Hhhcc
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLRKS 534 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~---~lR~~ 534 (709)
-|+++||+|+|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.. .+|+.
T Consensus 7 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 7 LVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred eEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 489999999996 46799999999999999999999999999999999999999999999999999877654 35788
Q ss_pred eEEEcCCCCCCch-hHHHHHHcCCC---CCCHH----HHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 005205 535 IGVVPQDTVLFND-TIFHNIRYGRL---SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (709)
Q Consensus 535 i~~V~Q~~~LF~g-TIreNI~~g~~---~~s~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaI 606 (709)
++||+|++.+|.+ |++|||.++.. ..+.+ ++.++++..++.+ ........||||||||++|
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGq~qrv~l 154 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-----------AAKLMPSELSGGMARRAAL 154 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHH
Confidence 9999999999986 99999987421 12222 2333344433332 2233446899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 607 ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 607 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|+|++.|+++++.+.
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998753 7899999999998765 999999999999999999999864
Q ss_pred c-cHHHHHHH
Q 005205 684 A-GRYAQLWG 692 (709)
Q Consensus 684 ~-g~Y~~l~~ 692 (709)
. ..++.++.
T Consensus 235 ~~~~~~~~~~ 244 (269)
T PRK11831 235 PDPRVRQFLD 244 (269)
T ss_pred CcHHHHHHHH
Confidence 3 34555654
No 170
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-46 Score=393.70 Aligned_cols=216 Identities=30% Similarity=0.466 Sum_probs=182.9
Q ss_pred eEEEEeEEEEecCC----cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC--------
Q 005205 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE-------- 525 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~-------- 525 (709)
.|+++||+|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 38999999999743 269999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CCHHHhhcceEEEcCCC--CCCchhHHHHHHcCCC--CCCHHH----HHHHHHHHchHHHHHhC
Q 005205 526 ----------------VTLESLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEE----VYDAARRAAIHDTIMNF 581 (709)
Q Consensus 526 ----------------~~~~~lR~~i~~V~Q~~--~LF~gTIreNI~~g~~--~~s~~e----i~~A~~~a~l~~~I~~L 581 (709)
.+...+|+.||||+|+| .+|..|++|||.|+.. ..+.++ +.++++..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----- 156 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE----- 156 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh-----
Confidence 13567899999999986 7899999999998742 233333 344444444321
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHH-hh
Q 005205 582 PAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQ 659 (709)
Q Consensus 582 p~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti-~~ 659 (709)
.........||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||++..+ +.
T Consensus 157 -----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 157 -----SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 12345567899999999999999999999999999999999999999999998875 479999999999876 56
Q ss_pred cCeEEEEeCCEEEEecChHHHhhc
Q 005205 660 CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 660 aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||+|++|++|+|++.|+.+|+.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998765
No 171
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-45 Score=385.74 Aligned_cols=219 Identities=32% Similarity=0.501 Sum_probs=188.8
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHH
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLE 529 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-----p~~G~I~idG~di~~--~~~~ 529 (709)
..|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+..
T Consensus 12 ~~l~i~nl~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 12 IIISLQNVTISYGT-FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred ceEEEEeEEEEECC-EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 36999999999964 679999999999999999999999999999999999998 699999999999863 5677
Q ss_pred HhhcceEEEcCCCCCCchhHHHHHHcCCCC--C---CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLS--A---TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 530 ~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~--~---s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
.+|+.++||||++.+|..|++||+.++... . .++++.++++.+++.+. ++.........||||||||+
T Consensus 91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~qrl 163 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE-------CKDKLNESGYSLSGGQQQRL 163 (269)
T ss_pred HHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch-------hhhhhCCCcccCCHHHHHHH
Confidence 889999999999999999999999986421 1 13445555665554332 23344556678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeC-----------CEEE
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLEN-----------GKVI 672 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~-----------G~Iv 672 (709)
+|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+. .||+|++|++ |+|+
T Consensus 164 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~ 243 (269)
T PRK14259 164 CIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV 243 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE
Confidence 999999999999999999999999999999999999877899999999999875 5999999996 6799
Q ss_pred EecChHHHhhc
Q 005205 673 EQGSHDDLLTK 683 (709)
Q Consensus 673 e~Gth~eLl~~ 683 (709)
|.|+.+++.+.
T Consensus 244 ~~~~~~~~~~~ 254 (269)
T PRK14259 244 EFNETKKIFNS 254 (269)
T ss_pred EeCCHHHHHhC
Confidence 99999999763
No 172
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=383.56 Aligned_cols=218 Identities=30% Similarity=0.482 Sum_probs=188.6
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCCC--CHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-----~~G~I~idG~di~~~--~~~~ 530 (709)
-|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.+. +...
T Consensus 6 ~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 6 ILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred eEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 489999999996 56899999999999999999999999999999999999763 489999999999876 4567
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCCC--C-C----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLS--A-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~~--~-s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
.|+.++||+|++.+|+.|++|||.++... . . ++++.++++..++.+ ++.+.+.+.+..||||||||
T Consensus 85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQQR 157 (253)
T ss_pred hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHHHH
Confidence 88899999999999999999999986321 1 1 223444555444433 33344667788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||++..+. .||+|++|++|++++.|+.+++..
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence 9999999999999999999999999999999999999877899999999999986 599999999999999999999875
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 238 ~ 238 (253)
T PRK14261 238 N 238 (253)
T ss_pred C
Confidence 4
No 173
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=6e-46 Score=365.28 Aligned_cols=177 Identities=40% Similarity=0.684 Sum_probs=167.6
Q ss_pred EEEEeEEEEecCC-cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 459 I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
|+++|++|+|++. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..+ ...+|+.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 5799999999753 4799999999999999999999999999999999999999999999999998776 6778999999
Q ss_pred EcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 005205 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (709)
Q Consensus 538 V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~IL 617 (709)
|+|++.+|+.|++||| ...||||||||++||||++++|++|
T Consensus 80 ~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 80 LNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred EccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999998 5689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEec
Q 005205 618 LCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQG 675 (709)
Q Consensus 618 ILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~G 675 (709)
||||||++||+.+.+.+.+.|+++.+++|+|++||++..+..||++++|++|++++.|
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999887789999999999999999999999999999865
No 174
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-45 Score=387.64 Aligned_cols=219 Identities=30% Similarity=0.507 Sum_probs=184.6
Q ss_pred eEEEEeEEEEecCC----cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC----CHH
Q 005205 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLE 529 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~----~~~ 529 (709)
.|+++||+|+|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 38899999999742 4799999999999999999999999999999999999999999999999999764 456
Q ss_pred HhhcceEEEcCCC--CCCchhHHHHHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCcc-ccccCCCCCCChHHHHHH
Q 005205 530 SLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 530 ~lR~~i~~V~Q~~--~LF~gTIreNI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQrQRi 604 (709)
.+|+.|+||||++ .+|+.|++|||.++.. ..+.++..+.+ .+.++.+ |++ .........||||||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv 154 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALA-----REKLALV--GISESLFEKNPFELSGGQMRRV 154 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 7889999999998 6889999999987521 23343332222 2223322 333 223455678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhh
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
+|||||+++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 155 AIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998875 4789999999999885 599999999999999999999876
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 235 ~ 235 (280)
T PRK13649 235 D 235 (280)
T ss_pred C
Confidence 4
No 175
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-45 Score=387.10 Aligned_cols=219 Identities=32% Similarity=0.549 Sum_probs=188.5
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHH
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLE 529 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-----p~~G~I~idG~di~~--~~~~ 529 (709)
..|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.+ .+..
T Consensus 38 ~~l~i~~l~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~ 116 (285)
T PRK14254 38 TVIEARDLNVFYGD-EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116 (285)
T ss_pred ceEEEEEEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchH
Confidence 35999999999964 679999999999999999999999999999999999997 689999999999865 3566
Q ss_pred HhhcceEEEcCCCCCCchhHHHHHHcCCC-----CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRL-----SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 530 ~lR~~i~~V~Q~~~LF~gTIreNI~~g~~-----~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
.+|+.++||+|++.+|..|++|||.++.. ...++++.++++..++.+.+. ..+.+....||||||||+
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~qrv 189 (285)
T PRK14254 117 ALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQRL 189 (285)
T ss_pred hhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHHHH
Confidence 78899999999999999999999987521 112345666666666543332 124556779999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEE-EEeCCEEEEecChHHHhh
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEII-VLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Ii-vl~~G~Ive~Gth~eLl~ 682 (709)
+|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+.. ||+++ +|++|+|++.|+++++.+
T Consensus 190 ~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~ 269 (285)
T PRK14254 190 CIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFE 269 (285)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999998777899999999999875 99975 579999999999999875
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 270 ~ 270 (285)
T PRK14254 270 N 270 (285)
T ss_pred C
Confidence 4
No 176
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.3e-46 Score=376.32 Aligned_cols=200 Identities=38% Similarity=0.613 Sum_probs=173.1
Q ss_pred EEEeEEEEecCC-cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 460 QFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 460 ~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
+++||+++|++. +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 478999999642 6799999999999999999999999999999999999999999999999999988888899999999
Q ss_pred cCCC--CCCchhHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 539 PQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 539 ~Q~~--~LF~gTIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
||++ .+++.|++||+.++.. ..+. +++.++++..++.+++ ......||||||||++|||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~laral 149 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLR-----------DRSPFTLSGGQKQRVAIAGVL 149 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHHHHHHH
Confidence 9998 4678999999987532 1222 2344455555554433 334568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCE
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGK 670 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~ 670 (709)
+++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999998875 47999999999999987 99999999985
No 177
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.1e-45 Score=376.47 Aligned_cols=203 Identities=32% Similarity=0.529 Sum_probs=175.4
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH---hhcce
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LRKSI 535 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~---lR~~i 535 (709)
|+++||+++|++++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++... +|+.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 789999999964568999999999999999999999999999999999999999999999999998876544 78899
Q ss_pred EEEcCCCCC-CchhHHHHHHcCC--CCCCHHH----HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 536 GVVPQDTVL-FNDTIFHNIRYGR--LSATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 536 ~~V~Q~~~L-F~gTIreNI~~g~--~~~s~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
+||+|++.+ ++.|++|||.++. ...++++ +.++++..++.+++.+ ....||||||||++|||
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 150 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGIAR 150 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHHHH
Confidence 999999987 5679999998752 1233333 4455555555544333 34689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEE
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI 672 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Iv 672 (709)
|++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 9999999999999999999999999999999874 47899999999999876 8999999999986
No 178
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=386.25 Aligned_cols=218 Identities=28% Similarity=0.472 Sum_probs=186.9
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-----p~~G~I~idG~di~~--~~~~~ 530 (709)
-|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+...
T Consensus 24 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 24 VFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred EEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 599999999996 4579999999999999999999999999999999999987 699999999999853 45667
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCC--CCCHH-----HHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SATEE-----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~--~~s~~-----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+|+.++||||++.+|..|++|||.++.. ..+++ .+.++++..++. +++.......+..||||||||
T Consensus 103 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~qr 175 (271)
T PRK14238 103 LRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQQR 175 (271)
T ss_pred HhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHHHH
Confidence 8899999999999999999999987531 22221 122333333222 233344566788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 255 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFS 255 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999998878999999999999764 99999999999999999999976
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 256 ~ 256 (271)
T PRK14238 256 N 256 (271)
T ss_pred C
Confidence 4
No 179
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-45 Score=388.97 Aligned_cols=221 Identities=31% Similarity=0.526 Sum_probs=183.8
Q ss_pred ceEEEEeEEEEecCC----cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC----C-C
Q 005205 457 GSIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----V-T 527 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~----~-~ 527 (709)
+.|+++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+ . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 579999999999743 259999999999999999999999999999999999999999999999999853 2 4
Q ss_pred HHHhhcceEEEcCCC--CCCchhHHHHHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 528 LESLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 528 ~~~lR~~i~~V~Q~~--~LF~gTIreNI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
...+|+.|+||+|++ .+|..|++|||.++.. ..+.++..+.++ .+.+.+ .||+++ .......||||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~--~ll~~~-~L~~~~---~~~~~~~LS~Gq~qr 158 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVP--ELLKLV-QLPEDY---VKRSPFELSGGQKRR 158 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHc-CCChhH---hcCChhhCCHHHHHH
Confidence 567889999999998 5788999999988632 223333322221 111211 333332 345667999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHH
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDL 680 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eL 680 (709)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 799999999999875 5999999999999999999988
Q ss_pred hhc
Q 005205 681 LTK 683 (709)
Q Consensus 681 l~~ 683 (709)
...
T Consensus 239 ~~~ 241 (289)
T PRK13645 239 FSN 241 (289)
T ss_pred hcC
Confidence 654
No 180
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-45 Score=387.43 Aligned_cols=214 Identities=23% Similarity=0.388 Sum_probs=183.3
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC--CCCHHHhhcceE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSIG 536 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~--~~~~~~lR~~i~ 536 (709)
|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. +.+...+|+.|+
T Consensus 2 l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 78999999996 467999999999999999999999999999999999999999999999999985 344567889999
Q ss_pred EEcCCCC--CCchhHHHHHHcCC--CCCCHH----HHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 537 VVPQDTV--LFNDTIFHNIRYGR--LSATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 537 ~V~Q~~~--LF~gTIreNI~~g~--~~~s~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
||+|++. +|..|+.||+.++. ...+.+ ++.++++..++.++. ......||||||||++|||
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~lar 149 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAIAG 149 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHHHH
Confidence 9999985 67889999998752 122332 334455555554432 2345689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+. .||+|++|++|++++.|++++++...
T Consensus 150 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 150 ALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACT 227 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCh
Confidence 9999999999999999999999999999998875 4789999999999985 59999999999999999999987653
No 181
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.9e-45 Score=376.00 Aligned_cols=210 Identities=37% Similarity=0.514 Sum_probs=176.0
Q ss_pred EEEEeEEEEecCC---cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH---HHhh
Q 005205 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESLR 532 (709)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~---~~lR 532 (709)
|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 7899999999643 279999999999999999999999999999999999999999999999999988774 6788
Q ss_pred cceEEEcCCC--CCC-chhHHHHHHcCC----CCCCHHHHHHHHHHHchHHHHHhCCCCcc-ccccCCCCCCChHHHHHH
Q 005205 533 KSIGVVPQDT--VLF-NDTIFHNIRYGR----LSATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 533 ~~i~~V~Q~~--~LF-~gTIreNI~~g~----~~~s~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQrQRi 604 (709)
+.++||+|++ .++ ..|++|||.++. +...+++..+++ ++.++.+ |++ ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 9999999999 344 579999997642 111122211111 2333333 332 345566688999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEec
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQG 675 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~G 675 (709)
+|||||+.+|+||||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998764 799999999999987 69999999999999865
No 182
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-45 Score=388.42 Aligned_cols=214 Identities=29% Similarity=0.500 Sum_probs=183.9
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC--CCHHHhhcceE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE--VTLESLRKSIG 536 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~--~~~~~lR~~i~ 536 (709)
|+++||+|+|++.+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .+...+++.|+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 7899999999755679999999999999999999999999999999999999999999999999852 33457889999
Q ss_pred EEcCCC--CCCchhHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 537 VVPQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 537 ~V~Q~~--~LF~gTIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
||+|++ .+|+.|++|||.++.. ..+. +++.++++..++.++. + .....||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~----~~~~~LS~Gq~qrv~lar 150 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE-------N----KPPHHLSGGQKKRVAIAG 150 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhh-------c----CChhhCCHHHHHHHHHHH
Confidence 999998 5789999999987631 1222 2344455555554322 2 234589999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhc
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
|++.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||++..+. .||+|++|++|++++.|+++++++.
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999875 4799999999999887 5999999999999999999998764
No 183
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=382.60 Aligned_cols=218 Identities=30% Similarity=0.519 Sum_probs=188.7
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCC-CCCHHHh
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDIC-EVTLESL 531 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-----~~G~I~idG~di~-~~~~~~l 531 (709)
.|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++. ..+...+
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 489999999996 46899999999999999999999999999999999999986 5999999999985 4567788
Q ss_pred hcceEEEcCCCCCCchhHHHHHHcCCC--CCC-----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 532 RKSIGVVPQDTVLFNDTIFHNIRYGRL--SAT-----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 532 R~~i~~V~Q~~~LF~gTIreNI~~g~~--~~s-----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
|+.++||+|++.+|..|++|||.++.. ... ++++.++++..++++.+ .+.+......||||||||+
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~qrv 154 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQRL 154 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHHHH
Confidence 999999999999999999999987632 111 22344455555554433 2344556779999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+.. ||+|++|++|+|++.|+.+++...
T Consensus 155 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 234 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999999999999999999999999999999999998778999999999999776 999999999999999999988653
No 184
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.7e-46 Score=380.03 Aligned_cols=211 Identities=34% Similarity=0.527 Sum_probs=186.5
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+|+|++ +++++|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+. .++.++||
T Consensus 1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEEE
Confidence 579999999964 579999999999999999999999999999999999999999999999999987764 36789999
Q ss_pred cCCCCCCch-hHHHHHHcCC------CCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 539 PQDTVLFND-TIFHNIRYGR------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 539 ~Q~~~LF~g-TIreNI~~g~------~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
+|++.+|.+ |++||+.++. +...++++.++++..++++++...| ..||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral~ 146 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARALV 146 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHh
Confidence 999999975 9999998752 1112445666777777776665554 589999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999999999999998764 7999999999999765 899999999999999999988764
No 185
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-45 Score=383.99 Aligned_cols=218 Identities=30% Similarity=0.474 Sum_probs=189.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCC--CCCHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDIC--EVTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-----p~~G~I~idG~di~--~~~~~~ 530 (709)
-|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++. ..+...
T Consensus 10 ~l~i~~v~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 10 VLRTENLNVYYG-SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred EEEEeeeEEEEC-CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 499999999996 3589999999999999999999999999999999999986 48999999999985 345677
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCCC--C---CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLS--A---TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~~--~---s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRia 605 (709)
+|+.|+||+|++.+|+.|++|||.++... . .++++.++++.+++.+++.. .......+||||||||++
T Consensus 89 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qrv~ 161 (264)
T PRK14243 89 VRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQRLC 161 (264)
T ss_pred HhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHHHH
Confidence 89999999999999999999999886321 1 13445566777777655532 235567799999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEe---------CCEEEEec
Q 005205 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLE---------NGKVIEQG 675 (709)
Q Consensus 606 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~---------~G~Ive~G 675 (709)
|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|+ +|+|++.|
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~ 241 (264)
T PRK14243 162 IARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFD 241 (264)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeC
Confidence 99999999999999999999999999999999999887899999999999865 589999998 89999999
Q ss_pred ChHHHhhc
Q 005205 676 SHDDLLTK 683 (709)
Q Consensus 676 th~eLl~~ 683 (709)
+++|+.+.
T Consensus 242 ~~~~~~~~ 249 (264)
T PRK14243 242 RTEKIFNS 249 (264)
T ss_pred CHHHHHhC
Confidence 99999764
No 186
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-45 Score=381.32 Aligned_cols=218 Identities=30% Similarity=0.478 Sum_probs=188.3
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCCC--CHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-----~~G~I~idG~di~~~--~~~~ 530 (709)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +...
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 4 KMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred EEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 589999999996 46799999999999999999999999999999999999986 799999999998653 4457
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCCC--C-C----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLS--A-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~~--~-s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+|+.++||||++.+|+.|++||+.++... . + ++++.++++.+++.+.+. .........||||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qr 155 (251)
T PRK14270 83 LRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQQR 155 (251)
T ss_pred HHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHHHH
Confidence 78899999999999999999999876311 1 1 234455666666543332 23445677999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++||||++++|+|||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++..
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFL 235 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999998778999999999998765 99999999999999999999975
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 236 ~ 236 (251)
T PRK14270 236 E 236 (251)
T ss_pred C
Confidence 4
No 187
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2e-45 Score=378.14 Aligned_cols=211 Identities=36% Similarity=0.531 Sum_probs=182.0
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++|++|+|++ +++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++||
T Consensus 1 i~i~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGS-FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECC-eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEEE
Confidence 579999999974 579999999999999999999999999999999999999999999999999987653 47889999
Q ss_pred cCCCCCCch-hHHHHHHcCCCC--CC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 539 PQDTVLFND-TIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 539 ~Q~~~LF~g-TIreNI~~g~~~--~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
||++.+|.+ |++||+.++.+. .+ ++++.++++..++.++.. ....+|||||+||++|||||+
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-----------RYPNQLSGGQRQRVALARALA 146 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 999999975 999999876421 11 233444444444433332 334689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
++|+++||||||++||+++++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999998754 7999999999998755 999999999999999999999753
No 188
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-45 Score=381.74 Aligned_cols=221 Identities=20% Similarity=0.342 Sum_probs=187.3
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHh-hcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~l-R~~i~ 536 (709)
-|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |..++
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 5 LLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred eEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 489999999996 4689999999999999999999999999999999999999999999999999998876655 45699
Q ss_pred EEcCCCCCCch-hHHHHHHcCCCCCCH--------------HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHH
Q 005205 537 VVPQDTVLFND-TIFHNIRYGRLSATE--------------EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEK 601 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~~~~s~--------------~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQr 601 (709)
||+|++.+|.+ |++|||.++.....+ ++..+ ....+.++++.+ |++........+||||||
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE--ALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhH--HHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 99999999986 999999986311000 00001 111233445554 566666777889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChH
Q 005205 602 QRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHD 678 (709)
Q Consensus 602 QRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~ 678 (709)
||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+.+
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 999999999999999999999999999999999999988753 7899999999999865 9999999999999999999
Q ss_pred HHhhc
Q 005205 679 DLLTK 683 (709)
Q Consensus 679 eLl~~ 683 (709)
++...
T Consensus 240 ~~~~~ 244 (255)
T PRK11300 240 EIRNN 244 (255)
T ss_pred HHhhC
Confidence 88653
No 189
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-45 Score=382.09 Aligned_cols=204 Identities=32% Similarity=0.479 Sum_probs=179.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+|+.++|
T Consensus 12 ~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~~ 85 (257)
T PRK11247 12 PLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTRL 85 (257)
T ss_pred cEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceEE
Confidence 599999999996 468999999999999999999999999999999999999999999999998763 56789999
Q ss_pred EcCCCCCCc-hhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 005205 538 VPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (709)
Q Consensus 538 V~Q~~~LF~-gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~I 616 (709)
|+|++.+|. .|++||+.++.....++++.++++..++.++. .....+||||||||++|||||+++|++
T Consensus 86 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p~l 154 (257)
T PRK11247 86 MFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRPGL 154 (257)
T ss_pred EecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999997 69999999864322355666777776665543 334578999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChH
Q 005205 617 LLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHD 678 (709)
Q Consensus 617 LILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~ 678 (709)
|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+.+
T Consensus 155 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 155 LLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999998874 3799999999999875 59999999999999999865
No 190
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-45 Score=379.08 Aligned_cols=218 Identities=24% Similarity=0.490 Sum_probs=187.6
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH-hhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~-lR~~i~ 536 (709)
.|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... +|+.++
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 389999999996 468999999999999999999999999999999999999999999999999998887644 578899
Q ss_pred EEcCCCCCCch-hHHHHHHcCCC---CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 005205 537 VVPQDTVLFND-TIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~~---~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~ 612 (709)
||||++.+|.. |++||+.++.. ..+.++. ...+++.++.+ |++.........||||||||++||||+++
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 99999999985 99999987531 1222221 12334556655 56655667778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 613 APPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 613 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+ +.||+|++|++|++++.|+++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 999999999999999999999999988775 479999999999765 55999999999999999999998763
No 191
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-45 Score=401.87 Aligned_cols=209 Identities=37% Similarity=0.567 Sum_probs=179.7
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHh----hcceEEEcCCCCCCc-h
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL----RKSIGVVPQDTVLFN-D 547 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~l----R~~i~~V~Q~~~LF~-g 547 (709)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.|+.+++...+ |++++||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 48999999999999999999999999999999999999999999999999998887654 468999999999996 5
Q ss_pred hHHHHHHcCCC--CCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 005205 548 TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDE 621 (709)
Q Consensus 548 TIreNI~~g~~--~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDE 621 (709)
|++|||.++.. ..+ ++++.++++..++.++..+.| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999987631 112 345566677777766555544 4899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhcc-c-HHHHHHH
Q 005205 622 ATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTKA-G-RYAQLWG 692 (709)
Q Consensus 622 aTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~~-g-~Y~~l~~ 692 (709)
|||+||+.+.+.+++.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++|+++.. . ..++++.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v~~~~~ 266 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFR 266 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHHHHHHh
Confidence 999999999999999998874 4799999999999875 59999999999999999999998753 2 3344443
No 192
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1e-45 Score=377.31 Aligned_cols=209 Identities=29% Similarity=0.481 Sum_probs=182.0
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++...+++.++|
T Consensus 7 ~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (225)
T PRK10247 7 LLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSY 85 (225)
T ss_pred eEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence 599999999996 4679999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EcCCCCCCchhHHHHHHcCC---CC-CCHHHHHHHHHHHchHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhcc
Q 005205 538 VPQDTVLFNDTIFHNIRYGR---LS-ATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGEKQRVALARAFLK 612 (709)
Q Consensus 538 V~Q~~~LF~gTIreNI~~g~---~~-~s~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQrQRiaIARAll~ 612 (709)
|+|++.+|+.|++||+.++. .. ..++++. +.++.+ |++ +........||||||||++|||||++
T Consensus 86 ~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 86 CAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFL---------DDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EecccccccccHHHHHHhHHhhcCCChHHHHHH---------HHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999998642 11 1122233 333333 332 34456678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhhcCeEEEEe-CCEEEEecChH
Q 005205 613 APPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLE-NGKVIEQGSHD 678 (709)
Q Consensus 613 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~aD~Iivl~-~G~Ive~Gth~ 678 (709)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.++.||+|++|+ ++..+++|+|+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999998753 789999999999999999999994 77788899995
No 193
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.5e-45 Score=376.82 Aligned_cols=206 Identities=34% Similarity=0.499 Sum_probs=178.8
Q ss_pred eEEEEeEEEEecCC---cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH---h
Q 005205 458 SIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---L 531 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~---l 531 (709)
-|+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 58999999999743 36999999999999999999999999999999999999999999999999999887654 2
Q ss_pred -hcceEEEcCCCCCCch-hHHHHHHcCC--CCC----CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 532 -RKSIGVVPQDTVLFND-TIFHNIRYGR--LSA----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 532 -R~~i~~V~Q~~~LF~g-TIreNI~~g~--~~~----s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
++.++||+|++.+|.. |++|||.++. ... ..+++.++++..++.+++...| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3689999999999885 9999998642 111 1345566666666666554443 4799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhhcCeEEEEeCCEEEEe
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQ 674 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~ 674 (709)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+|+|+
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988743 7899999999999999999999999999875
No 194
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=384.01 Aligned_cols=218 Identities=31% Similarity=0.504 Sum_probs=189.3
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCC--CCHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-----~~G~I~idG~di~~--~~~~~ 530 (709)
.|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+...
T Consensus 7 ~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 7 AIKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred eEEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 699999999996 46799999999999999999999999999999999999986 48999999999864 45567
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCC------CCC-HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL------SAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~------~~s-~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+|+.|+||+|++.+|+.|++||+.++.. ... ++.+.++++.+++.+++.. ........||||||||
T Consensus 86 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 86 LRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQQR 158 (259)
T ss_pred hhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHHHH
Confidence 8899999999999999999999987521 111 2345567777777655442 2345677999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEe-----CCEEEEecCh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLE-----NGKVIEQGSH 677 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~-----~G~Ive~Gth 677 (709)
++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|+ +|++++.|++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 99999999999999999999999999999999999998778999999999999865 99999998 5999999999
Q ss_pred HHHhhc
Q 005205 678 DDLLTK 683 (709)
Q Consensus 678 ~eLl~~ 683 (709)
+|+.+.
T Consensus 239 ~~~~~~ 244 (259)
T PRK14260 239 TQIFSN 244 (259)
T ss_pred HHHhcC
Confidence 999753
No 195
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-45 Score=375.24 Aligned_cols=210 Identities=33% Similarity=0.544 Sum_probs=185.8
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+++|++ .+ .|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.++||
T Consensus 2 l~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH-LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSML 76 (232)
T ss_pred eEEEEEEEEECC-cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEEEE
Confidence 789999999963 33 399999999999999999999999999999999999999999999999876543 5789999
Q ss_pred cCCCCCCch-hHHHHHHcCC-CC-----CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 539 PQDTVLFND-TIFHNIRYGR-LS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 539 ~Q~~~LF~g-TIreNI~~g~-~~-----~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
||++.+|.+ |++|||.++. +. ..++++.++++..++.+++.+.| ..||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 999999985 9999998752 21 12456788888888887776665 379999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhcc
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
++|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|++++.|+++++....
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 99999999999999999999999999988753 7899999999998765 9999999999999999999998654
No 196
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.1e-45 Score=382.36 Aligned_cols=221 Identities=31% Similarity=0.509 Sum_probs=189.0
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++|++|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|+.++|+
T Consensus 2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 78999999996 46899999999999999999999999999999999999999999999999999999988888899999
Q ss_pred cCCCC-CCchhHHHHHHcCCCC----------CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 005205 539 PQDTV-LFNDTIFHNIRYGRLS----------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (709)
Q Consensus 539 ~Q~~~-LF~gTIreNI~~g~~~----------~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIA 607 (709)
+|++. .+..|++||+.++... ..++++.++++..++.+. .......||||||||++||
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la 149 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-----------ADRDMSTLSGGERQRVHVA 149 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHHHH
Confidence 99985 4678999999886321 012234555555555433 2334568999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhccc
Q 005205 608 RAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTKAG 685 (709)
Q Consensus 608 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~~g 685 (709)
||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|+|++.|+++|+.+. .
T Consensus 150 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~ 228 (256)
T TIGR03873 150 RALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTP-A 228 (256)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhCH-H
Confidence 999999999999999999999999999999998753 789999999999994 6999999999999999999998763 3
Q ss_pred HHHHHHH
Q 005205 686 RYAQLWG 692 (709)
Q Consensus 686 ~Y~~l~~ 692 (709)
...+.+.
T Consensus 229 ~~~~~~~ 235 (256)
T TIGR03873 229 LIRAVYG 235 (256)
T ss_pred HHHHHhC
Confidence 3444443
No 197
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=6.8e-46 Score=375.45 Aligned_cols=198 Identities=33% Similarity=0.536 Sum_probs=170.5
Q ss_pred EEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEc
Q 005205 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (709)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 539 (709)
+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+|+.++||+
T Consensus 1 ~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~ 74 (213)
T cd03235 1 EVEDLTVSYGG-HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVP 74 (213)
T ss_pred CcccceeEECC-EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEec
Confidence 47899999964 67999999999999999999999999999999999999999999999998764 4788999999
Q ss_pred CCCCC---CchhHHHHHHcCCCC----------CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 005205 540 QDTVL---FNDTIFHNIRYGRLS----------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (709)
Q Consensus 540 Q~~~L---F~gTIreNI~~g~~~----------~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaI 606 (709)
|++.+ |+.|++|||.++... ..++++.++++..++.++... ...+||||||||++|
T Consensus 75 q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~l 143 (213)
T cd03235 75 QRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRVLL 143 (213)
T ss_pred cccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHH
Confidence 99987 678999999886421 113345666666666654433 345899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEec
Q 005205 607 ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 675 (709)
Q Consensus 607 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~G 675 (709)
||||+.+|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999999998875 67899999999999865 8999999886 66654
No 198
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-45 Score=371.33 Aligned_cols=201 Identities=32% Similarity=0.517 Sum_probs=176.8
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+++|++ +. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .|+.++||
T Consensus 1 i~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE-QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC-Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEE
Confidence 579999999964 33 39999999999999999999999999999999999999999999999987764 36789999
Q ss_pred cCCCCCCch-hHHHHHHcCCC-C-----CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 539 PQDTVLFND-TIFHNIRYGRL-S-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 539 ~Q~~~LF~g-TIreNI~~g~~-~-----~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
+|++.+|.+ |++||+.++.. . .+++++.++++..++.+.....| ..||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 999999975 99999987632 1 13456777888888877666554 379999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEec
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 675 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~G 675 (709)
++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999875 37899999999998865 9999999999999865
No 199
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-45 Score=380.43 Aligned_cols=214 Identities=33% Similarity=0.504 Sum_probs=187.0
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|++||.++.+++...+++.++|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLGG-RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 3789999999964 679999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EcCCCCC-CchhHHHHHHcCCCCC------CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 538 VPQDTVL-FNDTIFHNIRYGRLSA------TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 538 V~Q~~~L-F~gTIreNI~~g~~~~------s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|+|++.+ ++.|++||+.++.... .++++.++++..++.+.. ......||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLA-----------GRDYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHH
Confidence 9999987 6789999998863211 123455555555554433 334569999999999999999
Q ss_pred c------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHh
Q 005205 611 L------KAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 611 l------~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl 681 (709)
+ .+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+. .||+|++|++|+|++.|+++|+.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9 5999999999999999999999999999875 4789999999999886 69999999999999999999987
Q ss_pred hc
Q 005205 682 TK 683 (709)
Q Consensus 682 ~~ 683 (709)
+.
T Consensus 230 ~~ 231 (258)
T PRK13548 230 TP 231 (258)
T ss_pred Ch
Confidence 64
No 200
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-45 Score=382.31 Aligned_cols=219 Identities=33% Similarity=0.489 Sum_probs=190.4
Q ss_pred CceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCC----CC
Q 005205 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDIC----EV 526 (709)
Q Consensus 456 ~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-----~~G~I~idG~di~----~~ 526 (709)
.+.|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|++||.++. ..
T Consensus 14 ~~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYG-GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 35799999999996 45899999999999999999999999999999999999975 7999999998874 34
Q ss_pred CHHHhhcceEEEcCCCCCCchhHHHHHHcCCC--C-----CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChH
Q 005205 527 TLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL--S-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599 (709)
Q Consensus 527 ~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~--~-----~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 599 (709)
+...+|+.++|++|++.+|.+|++|||.++.. . ..++++.++++.+++.+ ++.+.+......||||
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G 165 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLSGG 165 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCCHH
Confidence 45678999999999999999999999987521 1 12345566666665543 2334456677899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChH
Q 005205 600 EKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHD 678 (709)
Q Consensus 600 QrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~ 678 (709)
||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++
T Consensus 166 ~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~ 245 (265)
T PRK14252 166 QQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATD 245 (265)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999887899999999999986 59999999999999999999
Q ss_pred HHhh
Q 005205 679 DLLT 682 (709)
Q Consensus 679 eLl~ 682 (709)
++..
T Consensus 246 ~~~~ 249 (265)
T PRK14252 246 TIFI 249 (265)
T ss_pred HHHh
Confidence 9875
No 201
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.5e-45 Score=382.82 Aligned_cols=226 Identities=25% Similarity=0.415 Sum_probs=190.6
Q ss_pred eEEEEeEEEEecC--------CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH
Q 005205 458 SIQFDNVHFSYLT--------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE 529 (709)
Q Consensus 458 ~I~f~nVsF~Y~~--------~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~ 529 (709)
-|+++||+++|+. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 4899999999962 24799999999999999999999999999999999999999999999999999876666
Q ss_pred HhhcceEEEcCCCC--CCc-hhHHHHHHcCC---CCCC----HHHHHHHHHHHchH-HHHHhCCCCccccccCCCCCCCh
Q 005205 530 SLRKSIGVVPQDTV--LFN-DTIFHNIRYGR---LSAT----EEEVYDAARRAAIH-DTIMNFPAKYSTVVGERGLKLSG 598 (709)
Q Consensus 530 ~lR~~i~~V~Q~~~--LF~-gTIreNI~~g~---~~~s----~~ei~~A~~~a~l~-~~I~~Lp~G~dT~vGe~G~~LSG 598 (709)
..++.++||||++. ++. -|+.+|+.++. .... ++++.++++..++. +.. + .....|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-------S----YYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-------h----cCchhcCH
Confidence 67788999999985 444 48999986531 1112 34556666666662 222 2 23358999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEec
Q 005205 599 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 675 (709)
Q Consensus 599 GQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~G 675 (709)
|||||++|||||+++|+||||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998753 7899999999999986 9999999999999999
Q ss_pred ChHHHhhc--ccHHHHHHHhh
Q 005205 676 SHDDLLTK--AGRYAQLWGQQ 694 (709)
Q Consensus 676 th~eLl~~--~g~Y~~l~~~q 694 (709)
+++++.+. ...+++++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 99999875 35577788754
No 202
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.5e-45 Score=390.41 Aligned_cols=217 Identities=30% Similarity=0.492 Sum_probs=185.3
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++|+ +..+|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|+++|.|+...+ ...|++|||
T Consensus 7 ~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig~ 84 (306)
T PRK13537 7 PIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVGV 84 (306)
T ss_pred eEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEEE
Confidence 699999999996 467999999999999999999999999999999999999999999999999998755 457899999
Q ss_pred EcCCCCCCc-hhHHHHHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 538 VPQDTVLFN-DTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 538 V~Q~~~LF~-gTIreNI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
|||++.+|. .|++||+.+... ..+..+..+.++ .+.+. ..|++..++.++ +||||||||++|||||+.+|
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~~l~~-~~l~~~~~~~~~----~LS~G~~qrl~la~aL~~~P 157 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVP--PLLEF-AKLENKADAKVG----ELSGGMKRRLTLARALVNDP 157 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH--HHHHH-cCCchHhcCchh----hCCHHHHHHHHHHHHHhCCC
Confidence 999999986 699999986321 223333322211 12222 134555666664 79999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 615 PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
++|||||||++||+.+.+.+.+.|+++. +++|+|++||.++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 158 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 158 DVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999875 47999999999999865 999999999999999999999764
No 203
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-45 Score=379.30 Aligned_cols=218 Identities=33% Similarity=0.559 Sum_probs=189.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-----p~~G~I~idG~di~~--~~~~~ 530 (709)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||+++.+ .+...
T Consensus 3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 488999999996 4679999999999999999999999999999999999864 489999999999876 34667
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCC--CC-C----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~--~~-s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+|+.++||||++.+|+.|++|||.++.. .. + ++++.++++.+++.+++..+ +.+.+..||||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~qr 154 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQQR 154 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHHHH
Confidence 8999999999999999999999987521 11 1 23455667777776665432 345677999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||++..+.. ||+|++|++|++++.|+++++..
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFI 234 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999998788999999999998766 89999999999999999999975
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 235 ~ 235 (250)
T PRK14266 235 N 235 (250)
T ss_pred C
Confidence 4
No 204
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-45 Score=382.13 Aligned_cols=218 Identities=28% Similarity=0.453 Sum_probs=185.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCC--CCHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-----~~G~I~idG~di~~--~~~~~ 530 (709)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+...
T Consensus 4 ~l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 4899999999964 5799999999999999999999999999999999999974 69999999999853 45667
Q ss_pred hhcceEEEcCCCCCCc-hhHHHHHHcCCC---CCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHH
Q 005205 531 LRKSIGVVPQDTVLFN-DTIFHNIRYGRL---SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~-gTIreNI~~g~~---~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQ 602 (709)
+|+.++||+|++.+|. .|++||+.++.. ..+ ++++.++++..++.+++ .........+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~q 155 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQQQ 155 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHHH
Confidence 8999999999999997 599999986521 111 23344555555554332 22344566789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEe------CCEEEEec
Q 005205 603 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLE------NGKVIEQG 675 (709)
Q Consensus 603 RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~------~G~Ive~G 675 (709)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|+ +|+|++.|
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~ 235 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEID 235 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecC
Confidence 99999999999999999999999999999999999998877899999999999875 599999996 89999999
Q ss_pred ChHHHhhc
Q 005205 676 SHDDLLTK 683 (709)
Q Consensus 676 th~eLl~~ 683 (709)
++++++..
T Consensus 236 ~~~~~~~~ 243 (258)
T PRK14241 236 DTEKIFSN 243 (258)
T ss_pred CHHHHHhC
Confidence 99999753
No 205
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-45 Score=385.36 Aligned_cols=219 Identities=32% Similarity=0.541 Sum_probs=183.9
Q ss_pred eEEEEeEEEEecCC----cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC----CHH
Q 005205 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLE 529 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~----~~~ 529 (709)
.|+++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 47899999999732 4799999999999999999999999999999999999999999999999998753 346
Q ss_pred HhhcceEEEcCCC--CCCchhHHHHHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCccc-cccCCCCCCChHHHHHH
Q 005205 530 SLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGEKQRV 604 (709)
Q Consensus 530 ~lR~~i~~V~Q~~--~LF~gTIreNI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQrQRi 604 (709)
..|+.|+||+|+| .+|..|++|||.++.. ..+.++..+. +.+.++.+ |+++ ........||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 7788999999998 5888999999987532 2333332211 12233332 3432 23455679999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhh
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999875 4789999999999875 699999999999999999999876
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 235 ~ 235 (287)
T PRK13641 235 D 235 (287)
T ss_pred C
Confidence 4
No 206
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-45 Score=380.52 Aligned_cols=218 Identities=28% Similarity=0.421 Sum_probs=191.7
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCCC--CHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-----~~G~I~idG~di~~~--~~~~ 530 (709)
.+.++++++.|. +.++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||+++.+. +...
T Consensus 8 ~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 86 (261)
T PRK14263 8 VMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVV 86 (261)
T ss_pred eEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHh
Confidence 488999999995 46899999999999999999999999999999999999987 799999999998653 4457
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCC-----CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL-----SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~-----~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRia 605 (709)
+|+.++||+|++.+|+.|+.|||.++.. ...++++.++++.+++.+.+.. ..++...+||||||||++
T Consensus 87 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qrv~ 159 (261)
T PRK14263 87 VRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQRLC 159 (261)
T ss_pred hhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHHHH
Confidence 7889999999999999999999988631 1123567778888877655543 234677899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEe--------CCEEEEecC
Q 005205 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLE--------NGKVIEQGS 676 (709)
Q Consensus 606 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~--------~G~Ive~Gt 676 (709)
|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|+ +|+|++.|+
T Consensus 160 laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~ 239 (261)
T PRK14263 160 IARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGP 239 (261)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCC
Confidence 99999999999999999999999999999999999877899999999999876 499999996 899999999
Q ss_pred hHHHhhc
Q 005205 677 HDDLLTK 683 (709)
Q Consensus 677 h~eLl~~ 683 (709)
++++++.
T Consensus 240 ~~~~~~~ 246 (261)
T PRK14263 240 TAQIFQN 246 (261)
T ss_pred HHHHHhC
Confidence 9999864
No 207
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=3.5e-45 Score=382.99 Aligned_cols=242 Identities=28% Similarity=0.441 Sum_probs=197.9
Q ss_pred eEEEEeEEEEecC--------CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-
Q 005205 458 SIQFDNVHFSYLT--------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL- 528 (709)
Q Consensus 458 ~I~f~nVsF~Y~~--------~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~- 528 (709)
-|+++||+|+|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 3899999999974 4689999999999999999999999999999999999999999999999999988765
Q ss_pred --HHhhcceEEEcCCCC--CC-chhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccc-cccCCCCCCChHHHH
Q 005205 529 --ESLRKSIGVVPQDTV--LF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGEKQ 602 (709)
Q Consensus 529 --~~lR~~i~~V~Q~~~--LF-~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQrQ 602 (709)
..+|+.++||+|++. ++ ..|++||+.+...... .+..+.....+++.+..+ |+++ ........|||||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge~q 158 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAV--DLDDSVLDKRPPQLSGGQLQ 158 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHc--CCChhHhhCCCccCChHHHH
Confidence 357889999999983 33 4799999975321000 001122223445556654 6764 456777899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHH
Q 005205 603 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDD 679 (709)
Q Consensus 603 RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~e 679 (709)
|++|||||+.+|+||||||||++||+++.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|++++.|+++|
T Consensus 159 rl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 238 (268)
T PRK10419 159 RVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGD 238 (268)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhh
Confidence 99999999999999999999999999999999999988753 7899999999999974 99999999999999999999
Q ss_pred HhhcccHHHHHHHhhhcchhHHHH
Q 005205 680 LLTKAGRYAQLWGQQNNTADAIDA 703 (709)
Q Consensus 680 Ll~~~g~Y~~l~~~q~~~~~~~~~ 703 (709)
+....+.|..-+..-...+++++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~ 262 (268)
T PRK10419 239 KLTFSSPAGRVLQNAVLPAFPVRR 262 (268)
T ss_pred ccCCCCHHHHHHHHhccCCcchhc
Confidence 987777665555443334444443
No 208
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-45 Score=390.58 Aligned_cols=226 Identities=31% Similarity=0.487 Sum_probs=187.3
Q ss_pred eEEEEeEEEEecC---------CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH
Q 005205 458 SIQFDNVHFSYLT---------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL 528 (709)
Q Consensus 458 ~I~f~nVsF~Y~~---------~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~ 528 (709)
-|+++|++++|+. ..++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 4899999999962 2479999999999999999999999999999999999999999999999999998875
Q ss_pred H---HhhcceEEEcCCCC--CCc-hhHHHHHHcC---CCCCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCC
Q 005205 529 E---SLRKSIGVVPQDTV--LFN-DTIFHNIRYG---RLSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (709)
Q Consensus 529 ~---~lR~~i~~V~Q~~~--LF~-gTIreNI~~g---~~~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~ 595 (709)
. .+|++|+||+|+|. |+. -||.+|+... ....+. +++.++++..++.+ ++++. ....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~----~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDR----YPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcC----CCcc
Confidence 4 57889999999994 554 4899998632 111222 34455555555531 23333 3468
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEE
Q 005205 596 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVI 672 (709)
Q Consensus 596 LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Iv 672 (709)
||||||||++|||||+.+|++||+|||||+||..+.+.|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988754 7999999999999974 9999999999999
Q ss_pred EecChHHHhhc-ccHHH-HHHHh
Q 005205 673 EQGSHDDLLTK-AGRYA-QLWGQ 693 (709)
Q Consensus 673 e~Gth~eLl~~-~g~Y~-~l~~~ 693 (709)
|.|+.+|+++. ...|. .++..
T Consensus 235 e~g~~~~~~~~p~hpyt~~ll~~ 257 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQALLSA 257 (327)
T ss_pred EECCHHHHhcCCCCHHHHHHHHh
Confidence 99999999875 23454 45443
No 209
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=7.8e-45 Score=389.90 Aligned_cols=231 Identities=27% Similarity=0.464 Sum_probs=187.6
Q ss_pred eEEEEeEEEEecC---CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCC---CCEEEECCEeCCCCCHHHh
Q 005205 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVTLESL 531 (709)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~---~G~I~idG~di~~~~~~~l 531 (709)
-|+++||+++|+. ..++|+|+||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.|+.+++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5899999999962 247999999999999999999999999999999999999996 9999999999999987776
Q ss_pred h----cceEEEcCCC--CCCc-hhHHHHHHcC---CCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHH
Q 005205 532 R----KSIGVVPQDT--VLFN-DTIFHNIRYG---RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEK 601 (709)
Q Consensus 532 R----~~i~~V~Q~~--~LF~-gTIreNI~~g---~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQr 601 (709)
| +.|+||+|+| .++. -|+.+||... ....+.++..+.+... + +. ..||++++ .++.....||||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~-L-~~-vgL~~~~~-~~~~~p~~LSgG~~ 167 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRM-L-DA-VKMPEARK-RMKMYPHEFSGGMR 167 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH-H-HH-cCCCChHH-HhcCCcccCCHHHH
Confidence 4 4899999998 3444 4777776431 1123333332222111 1 11 24555443 35677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChH
Q 005205 602 QRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHD 678 (709)
Q Consensus 602 QRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~ 678 (709)
||++|||||+.+|++||+|||||+||..+...|.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|||.|+++
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~ 247 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNAR 247 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999988764 789999999999986 59999999999999999999
Q ss_pred HHhhc-ccHHHH-HHH
Q 005205 679 DLLTK-AGRYAQ-LWG 692 (709)
Q Consensus 679 eLl~~-~g~Y~~-l~~ 692 (709)
|+.+. ...|.+ |+.
T Consensus 248 ~i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 248 DVFYQPSHPYSIGLLN 263 (330)
T ss_pred HHHhCCCCHHHHHHHH
Confidence 99874 344544 554
No 210
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-45 Score=397.88 Aligned_cols=213 Identities=28% Similarity=0.440 Sum_probs=185.0
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+++. .|+.|||
T Consensus 19 ~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~ 95 (377)
T PRK11607 19 LLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINM 95 (377)
T ss_pred eEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEE
Confidence 599999999996 4679999999999999999999999999999999999999999999999999987764 5789999
Q ss_pred EcCCCCCCch-hHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 538 VPQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|+|++.||.. |++|||.|+.. ..+. +++.++++..++.++..+. ...||||||||+||||||
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-----------~~~LSgGq~QRVaLARAL 164 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRK-----------PHQLSGGQRQRVALARSL 164 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999975 99999998732 1232 3445555555655444433 358999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
+++|++|+||||||+||+.+.+.+.+.|+++. .+.|+|+|||+++.+ ..||+|+||++|+|++.|+.+|+..+.
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999998887764 368999999999975 569999999999999999999998753
No 211
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-45 Score=385.06 Aligned_cols=219 Identities=33% Similarity=0.475 Sum_probs=186.2
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCCC--CHH
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICEV--TLE 529 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-----p~~G~I~idG~di~~~--~~~ 529 (709)
..|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||.++... +..
T Consensus 38 ~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 38 PHVVAKNFSIYYGE-FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred eEEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 35899999999963 579999999999999999999999999999999999864 4999999999998653 334
Q ss_pred HhhcceEEEcCCCCCCchhHHHHHHcCCC--CC-C----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHH
Q 005205 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (709)
Q Consensus 530 ~lR~~i~~V~Q~~~LF~gTIreNI~~g~~--~~-s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQ 602 (709)
.+|+.++||+|++.+|+.|++|||.++.. .. + ++++.++++..++.+.+. .........|||||||
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGGQQQ 189 (286)
T ss_pred HhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHHHHH
Confidence 67889999999999999999999987631 11 1 223445555555433221 1234566789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHh
Q 005205 603 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 603 RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl 681 (709)
|++|||||+.+|++|||||||++||+++.+.+.+.|+++.+++|+|+|||++..+.. ||+|++|++|+|++.|+++++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999764 9999999999999999999998
Q ss_pred hc
Q 005205 682 TK 683 (709)
Q Consensus 682 ~~ 683 (709)
+.
T Consensus 270 ~~ 271 (286)
T PRK14275 270 TN 271 (286)
T ss_pred hC
Confidence 64
No 212
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.8e-45 Score=372.23 Aligned_cols=205 Identities=33% Similarity=0.540 Sum_probs=172.0
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC--CCHHHhhcceE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE--VTLESLRKSIG 536 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~--~~~~~lR~~i~ 536 (709)
|+++||+|+|++ +++|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.+||+++.. .+...+|+.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 578999999964 679999999999999999999999999999999999999999999999999853 45567889999
Q ss_pred EEcCCCCCCc-hhHHHHHHcCCC---CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 005205 537 VVPQDTVLFN-DTIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (709)
Q Consensus 537 ~V~Q~~~LF~-gTIreNI~~g~~---~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~ 612 (709)
||+|++.+|. .|++||+.++.. ..+.++..+. +.+.++.+ |++..+.....+||||||||++||||+++
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~ 152 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALAM 152 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHH-----HHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHHhc
Confidence 9999999986 699999987631 2222222111 12233332 33333444557899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEE
Q 005205 613 APPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKV 671 (709)
Q Consensus 613 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~I 671 (709)
+|++|||||||++||+++.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|+|
T Consensus 153 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 153 NPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999875 47899999999999865 999999999985
No 213
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-45 Score=391.92 Aligned_cols=227 Identities=29% Similarity=0.425 Sum_probs=184.9
Q ss_pred eEEEEeEEEEecCC---cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC----CCCCEEEECCEeCCCCCHHH
Q 005205 458 SIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD----THSGSIRIDGQDICEVTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~----p~~G~I~idG~di~~~~~~~ 530 (709)
-|+++||+++|+.. .++|+||||+|++||++||||+||||||||+++|+|+++ |++|+|++||+|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37999999999743 369999999999999999999999999999999999998 48999999999999998776
Q ss_pred hhc----ceEEEcCCCC--CCc-hhHH----HHHHcCCC---CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCC
Q 005205 531 LRK----SIGVVPQDTV--LFN-DTIF----HNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKL 596 (709)
Q Consensus 531 lR~----~i~~V~Q~~~--LF~-gTIr----eNI~~g~~---~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~L 596 (709)
+++ .|+||||+|. ++. -|+. +|+..... ...++++.++++..++.+.. ..+......|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhC
Confidence 653 7999999995 332 2454 55543211 11133455666666654321 2234567799
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEE
Q 005205 597 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIE 673 (709)
Q Consensus 597 SGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive 673 (709)
|||||||++|||||+.+|++||+|||||+||+.+...|.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998854 789999999999985 699999999999999
Q ss_pred ecChHHHhhc-ccHHH-HHHH
Q 005205 674 QGSHDDLLTK-AGRYA-QLWG 692 (709)
Q Consensus 674 ~Gth~eLl~~-~g~Y~-~l~~ 692 (709)
.|+.+++++. ...|. .++.
T Consensus 235 ~g~~~~~~~~p~hpyt~~ll~ 255 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQALLR 255 (326)
T ss_pred ECCHHHHhhCCCChHHHHHHH
Confidence 9999999875 33454 4443
No 214
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-45 Score=381.65 Aligned_cols=222 Identities=27% Similarity=0.431 Sum_probs=191.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.++|
T Consensus 7 ~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (265)
T PRK10253 7 RLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85 (265)
T ss_pred EEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence 699999999996 4679999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EcCCCCCCc-hhHHHHHHcCC-CC---------CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 005205 538 VPQDTVLFN-DTIFHNIRYGR-LS---------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (709)
Q Consensus 538 V~Q~~~LF~-gTIreNI~~g~-~~---------~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaI 606 (709)
|||++.+|. .|++||+.++. +. ..++++.++++..++.++.. .....||||||||++|
T Consensus 86 v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrv~l 154 (265)
T PRK10253 86 LAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQRQRAWI 154 (265)
T ss_pred eeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHHHHHHH
Confidence 999998875 69999998762 11 11234566666666655433 3457899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhc
Q 005205 607 ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 607 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
|||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+. .||+|++|++|+|++.|+.+|+...
T Consensus 155 aral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 234 (265)
T PRK10253 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTA 234 (265)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhhH
Confidence 9999999999999999999999999999999998753 789999999999775 5999999999999999999998763
Q ss_pred ccHHHHHHH
Q 005205 684 AGRYAQLWG 692 (709)
Q Consensus 684 ~g~Y~~l~~ 692 (709)
....+++.
T Consensus 235 -~~~~~~~~ 242 (265)
T PRK10253 235 -ELIERIYG 242 (265)
T ss_pred -HHHHHHhC
Confidence 23444443
No 215
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=4.2e-45 Score=388.92 Aligned_cols=217 Identities=30% Similarity=0.469 Sum_probs=183.1
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.+. ...+|+.++|
T Consensus 4 ~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~ 81 (303)
T TIGR01288 4 AIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGV 81 (303)
T ss_pred EEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEE
Confidence 589999999996 46799999999999999999999999999999999999999999999999998764 3567899999
Q ss_pred EcCCCCCCc-hhHHHHHHcCC--CCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 538 VPQDTVLFN-DTIFHNIRYGR--LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 538 V~Q~~~LF~-gTIreNI~~g~--~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
|||++.+|. .|++||+.+.. ...+.++..+.++. +.+. ..|++.+++.+ ..||||||||++|||||+.+|
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~-~~l~~~~~~~~----~~LSgG~~qrv~la~al~~~p 154 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEF-ARLESKADVRV----ALLSGGMKRRLTLARALINDP 154 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHH-CCChhHhcCch----hhCCHHHHHHHHHHHHHhcCC
Confidence 999999985 69999997532 12333333332221 1121 13444445544 579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 615 PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 155 ~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 155 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999998874 47899999999999864 999999999999999999999754
No 216
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-45 Score=379.88 Aligned_cols=219 Identities=32% Similarity=0.512 Sum_probs=188.7
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-----CCEEEECCEeCCC--CCHH
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-----SGSIRIDGQDICE--VTLE 529 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~-----~G~I~idG~di~~--~~~~ 529 (709)
+.|+++||+|+|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.|+.+ .+..
T Consensus 6 ~~l~~~nl~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYDT-QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeCC-eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 36999999999963 57999999999999999999999999999999999999985 8999999999853 3556
Q ss_pred HhhcceEEEcCCCCCCchhHHHHHHcCC------CCCC-HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHH
Q 005205 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGR------LSAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (709)
Q Consensus 530 ~lR~~i~~V~Q~~~LF~gTIreNI~~g~------~~~s-~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQ 602 (709)
.+|+.++||+|++.+|..|++||+.++. +..+ ++++.++++..++.+++.. ..++....|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~q 157 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQQ 157 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHHH
Confidence 7889999999999999999999998752 1111 2345556666666554442 345667899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHh-hcCeEEEEeC-----CEEEEe
Q 005205 603 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVLEN-----GKVIEQ 674 (709)
Q Consensus 603 RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~-~aD~Iivl~~-----G~Ive~ 674 (709)
|++|||||+++|++|||||||++||+++.+.+.+.|+++. .++|+|+|||++..+. .||+|++|++ |+|++.
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999999999999999999999999999999998864 4899999999999886 5899999999 999999
Q ss_pred cChHHHhhc
Q 005205 675 GSHDDLLTK 683 (709)
Q Consensus 675 Gth~eLl~~ 683 (709)
|+++|+...
T Consensus 238 ~~~~~~~~~ 246 (261)
T PRK14258 238 GLTKKIFNS 246 (261)
T ss_pred CCHHHHHhC
Confidence 999999764
No 217
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-45 Score=378.55 Aligned_cols=218 Identities=33% Similarity=0.498 Sum_probs=185.9
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC--C---CCCEEEECCEeCCC--CCHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--T---HSGSIRIDGQDICE--VTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~--p---~~G~I~idG~di~~--~~~~~ 530 (709)
-|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+...
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 5 IITSSDVHLFYG-KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred eEEEEeEEEEEC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 489999999997 4689999999999999999999999999999999999975 5 59999999999864 34567
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCC--CCC-C----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGR--LSA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~--~~~-s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+|+.++||+|++.+|..|++||+.++. ... . ++++.++++.+++.+.+ .........+||||||||
T Consensus 84 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~qr 156 (252)
T PRK14255 84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQQR 156 (252)
T ss_pred hcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHHHH
Confidence 788999999999999999999998752 111 1 23344455555543322 233455667999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+..++..
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14255 157 VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999998877799999999999986 499999999999999999988876
Q ss_pred c
Q 005205 683 K 683 (709)
Q Consensus 683 ~ 683 (709)
.
T Consensus 237 ~ 237 (252)
T PRK14255 237 N 237 (252)
T ss_pred C
Confidence 4
No 218
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-45 Score=377.80 Aligned_cols=218 Identities=33% Similarity=0.523 Sum_probs=184.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-----CCEEEECCEeCCC--CCHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-----SGSIRIDGQDICE--VTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~-----~G~I~idG~di~~--~~~~~ 530 (709)
-|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+ .+...
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 488999999996 468999999999999999999999999999999999999875 8999999999875 34567
Q ss_pred hhcceEEEcCCCCCCch-hHHHHHHcCCC--CC-CHHHHHHHH----HHHchHHHHHhCCCCccccccCCCCCCChHHHH
Q 005205 531 LRKSIGVVPQDTVLFND-TIFHNIRYGRL--SA-TEEEVYDAA----RRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~g-TIreNI~~g~~--~~-s~~ei~~A~----~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQ 602 (709)
+|+.++|++|++.+|.. |+.||+.++.. .. .+++..+.+ +..++.+. +++.+++ ...+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~~----~~~~LS~G~~q 155 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDRLKT----PATGLSGGQQQ 155 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhhhcC----CcccCCHHHHH
Confidence 88999999999999985 99999987532 11 233333332 22333222 2233343 45689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHh
Q 005205 603 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 603 RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl 681 (709)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++++
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999885 9999999999999999999998
Q ss_pred hc
Q 005205 682 TK 683 (709)
Q Consensus 682 ~~ 683 (709)
+.
T Consensus 236 ~~ 237 (252)
T PRK14272 236 TN 237 (252)
T ss_pred hC
Confidence 65
No 219
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=7.2e-45 Score=379.65 Aligned_cols=226 Identities=27% Similarity=0.459 Sum_probs=189.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCC---CCEEEECCEeCCCC-----CHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEV-----TLE 529 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~---~G~I~idG~di~~~-----~~~ 529 (709)
-|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++... +..
T Consensus 4 ~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 489999999996 468999999999999999999999999999999999999986 49999999998654 345
Q ss_pred HhhcceEEEcCCCCCCc-hhHHHHHHcCCCCC--------------CHHHHHHHHHHHchHHHHHhCCCCccccccCCCC
Q 005205 530 SLRKSIGVVPQDTVLFN-DTIFHNIRYGRLSA--------------TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGL 594 (709)
Q Consensus 530 ~lR~~i~~V~Q~~~LF~-gTIreNI~~g~~~~--------------s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~ 594 (709)
.+|+.++||||++.+|. .|++||+.++.... .++++.++++..++.+.+ .....
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~ 151 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA-----------HQRVS 151 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH-----------hCCcc
Confidence 67889999999999887 59999998763211 123345555555554433 33456
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHH-hhcCeEEEEeCCEE
Q 005205 595 KLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKV 671 (709)
Q Consensus 595 ~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti-~~aD~Iivl~~G~I 671 (709)
.||||||||++||||++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|+|
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i 231 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999998863 79999999999975 56999999999999
Q ss_pred EEecChHHHhhcccHHHHHHHhhhcc
Q 005205 672 IEQGSHDDLLTKAGRYAQLWGQQNNT 697 (709)
Q Consensus 672 ve~Gth~eLl~~~g~Y~~l~~~q~~~ 697 (709)
++.|+++++ ......++|......
T Consensus 232 ~~~g~~~~~--~~~~~~~~~~~~~~~ 255 (262)
T PRK09984 232 FYDGSSQQF--DNERFDHLYRSINRV 255 (262)
T ss_pred EEeCCHHHh--ccHHHHHHHhhhhcc
Confidence 999999997 234566777665443
No 220
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=5.3e-45 Score=376.42 Aligned_cols=212 Identities=24% Similarity=0.334 Sum_probs=175.8
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCCCEEEECCEeCCCCCHHHh-hcce
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKSI 535 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl--y~p~~G~I~idG~di~~~~~~~l-R~~i 535 (709)
|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.+||.++..++.... +..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 57999999996 46899999999999999999999999999999999999 58999999999999998887665 4459
Q ss_pred EEEcCCCCCCch-hHHHHHHcCCCC---------CCH----HHHHHHHHHHchHHHHHhCCCC-ccccccCCCCCCChHH
Q 005205 536 GVVPQDTVLFND-TIFHNIRYGRLS---------ATE----EEVYDAARRAAIHDTIMNFPAK-YSTVVGERGLKLSGGE 600 (709)
Q Consensus 536 ~~V~Q~~~LF~g-TIreNI~~g~~~---------~s~----~ei~~A~~~a~l~~~I~~Lp~G-~dT~vGe~G~~LSGGQ 600 (709)
+||+|++.+|.+ |++||+.+.... .+. +++.++++..++ +++ .+..++ ..|||||
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~---~~LS~G~ 149 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM-------DEEFLNRSVN---EGFSGGE 149 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCC-------chhhcccccc---cCcCHHH
Confidence 999999999886 899999764210 111 122233333332 211 122221 2599999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh--cCeEEEEeCCEEEEecCh
Q 005205 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ--CDEIIVLENGKVIEQGSH 677 (709)
Q Consensus 601 rQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~--aD~Iivl~~G~Ive~Gth 677 (709)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 150 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 150 KKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 999999999999999999999999999999999999999875 47899999999999986 799999999999999999
Q ss_pred HHHh
Q 005205 678 DDLL 681 (709)
Q Consensus 678 ~eLl 681 (709)
+++.
T Consensus 230 ~~~~ 233 (243)
T TIGR01978 230 ELAK 233 (243)
T ss_pred HHhc
Confidence 8654
No 221
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=5.2e-45 Score=395.32 Aligned_cols=210 Identities=29% Similarity=0.412 Sum_probs=178.7
Q ss_pred CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCE----eCCCCCHHHhh----cceEEEcCCC
Q 005205 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ----DICEVTLESLR----KSIGVVPQDT 542 (709)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~----di~~~~~~~lR----~~i~~V~Q~~ 542 (709)
...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||. ++.+.+.+.+| ++|+||+|++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 346899999999999999999999999999999999999999999999996 67777766553 5899999999
Q ss_pred CCCc-hhHHHHHHcCCC--CCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 543 VLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 543 ~LF~-gTIreNI~~g~~--~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
.+|+ .|++|||.|+.. ..+ ++++.++++..++.++.... ..+||||||||++|||||+.+|+
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-----------~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-----------PGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHHhcCCC
Confidence 9997 799999998732 122 23455666666665554333 34799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhc-ccHHHHHH
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTK-AGRYAQLW 691 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~-~g~Y~~l~ 691 (709)
|||||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+++|++.+ ...|.+.+
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~ 264 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADF 264 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHHHH
Confidence 9999999999999999999999988764 79999999999986 56999999999999999999999865 34454433
No 222
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=5.1e-45 Score=356.97 Aligned_cols=171 Identities=44% Similarity=0.694 Sum_probs=163.1
Q ss_pred EEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 459 IQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 459 I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
|+++|++++|++ .+++++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 579999999974 3579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 005205 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (709)
Q Consensus 538 V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~IL 617 (709)
|+|++.+|+.|++||+ ||||||||++||||++.+|++|
T Consensus 81 ~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 81 LPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred ECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEEeCCEE
Q 005205 618 LCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGKV 671 (709)
Q Consensus 618 ILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl~~G~I 671 (709)
||||||++||+.+.+.+.+.|+++. +++|+|++||+++.++.||+|++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999999998875 47899999999999999999999999975
No 223
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.4e-45 Score=373.04 Aligned_cols=210 Identities=34% Similarity=0.537 Sum_probs=184.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++|++++|++ ++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|+++|.++.+.+. .++.++||
T Consensus 1 l~~~~l~~~~~~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKE--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCC--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEE
Confidence 578999999964 38999999999999999999999999999999999999999999999999987665 36899999
Q ss_pred cCCCCCCc-hhHHHHHHcCCCC--C----CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 539 PQDTVLFN-DTIFHNIRYGRLS--A----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 539 ~Q~~~LF~-gTIreNI~~g~~~--~----s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
+|++.+|. .|++||+.++... . .++++.++++..++.+++.+.| .+||||||||++||||++
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral~ 145 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARALV 145 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHHH
Confidence 99999995 7999999875321 1 2334566666667666554433 579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
++|++|+|||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|++++.|+++++++.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999999999999999998754 7999999999998775 999999999999999999999865
No 224
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=9.9e-45 Score=366.97 Aligned_cols=202 Identities=35% Similarity=0.562 Sum_probs=178.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
++++||+++|+. .++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+ .+|+.++||
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v 75 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSML 75 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEE
Confidence 368999999962 578999999999999999999999999999999999999999999999997654 467889999
Q ss_pred cCCCCCCch-hHHHHHHcCC-CC-----CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 539 PQDTVLFND-TIFHNIRYGR-LS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 539 ~Q~~~LF~g-TIreNI~~g~-~~-----~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
+|++.+|.+ |++||+.++. +. ..++++.++++..++.+...+.|. +||||||||++||||++
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSGGQRQRVALARCLV 144 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc-----------cCCHHHHHHHHHHHHHh
Confidence 999999975 9999998642 11 134567778888888777666553 79999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecC
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGS 676 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gt 676 (709)
++|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|++++.|.
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999998753 7899999999998764 99999999999999874
No 225
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=385.54 Aligned_cols=219 Identities=34% Similarity=0.546 Sum_probs=188.8
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHH
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLE 529 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-----p~~G~I~idG~di~~--~~~~ 529 (709)
..|+++||+++|++ +++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+..
T Consensus 44 ~~l~i~nl~~~~~~-~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~ 122 (305)
T PRK14264 44 AKLSVEDLDVYYGD-DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLV 122 (305)
T ss_pred ceEEEEEEEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHH
Confidence 35999999999964 679999999999999999999999999999999999986 689999999999865 3466
Q ss_pred HhhcceEEEcCCCCCCchhHHHHHHcCCCC-------------------CCHHHHHHHHHHHchHHHHHhCCCCcccccc
Q 005205 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLS-------------------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590 (709)
Q Consensus 530 ~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~-------------------~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vG 590 (709)
.+|+.++||+|++.+|++|++|||.++... ..++++.++++..++ ++++++.+.
T Consensus 123 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~ 195 (305)
T PRK14264 123 ELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL-------WDEVNDRLD 195 (305)
T ss_pred HHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC-------chhhhHHhc
Confidence 788999999999999999999999976310 012334444444443 334455667
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeE-EEEeC
Q 005205 591 ERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEI-IVLEN 668 (709)
Q Consensus 591 e~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~I-ivl~~ 668 (709)
....+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+| ++|++
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~ 275 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTG 275 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecC
Confidence 778899999999999999999999999999999999999999999999998878999999999999765 9997 57899
Q ss_pred CEEEEecChHHHhhc
Q 005205 669 GKVIEQGSHDDLLTK 683 (709)
Q Consensus 669 G~Ive~Gth~eLl~~ 683 (709)
|+|++.|+++++.+.
T Consensus 276 G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 276 GELVEYDDTDKIFEN 290 (305)
T ss_pred CEEEEeCCHHHHHhC
Confidence 999999999998754
No 226
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-45 Score=369.18 Aligned_cols=205 Identities=25% Similarity=0.477 Sum_probs=172.4
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. .+|+.++||
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~ 75 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYL 75 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEe
Confidence 57899999996 4679999999999999999999999999999999999999999999999988753 567899999
Q ss_pred cCCCCCCch-hHHHHHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 539 PQDTVLFND-TIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 539 ~Q~~~LF~g-TIreNI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
+|++.+|.+ |++||+.++.. ..+..+.. ..+.++++.+ |++........+||||||||++||||++.+|+
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 148 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHDPE 148 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999975 99999987521 11211111 1223334443 34444445567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEec
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 675 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~G 675 (709)
+|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|++++.|
T Consensus 149 ~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 149 LLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999998874 47899999999998865 9999999999999865
No 227
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.4e-44 Score=384.49 Aligned_cols=217 Identities=26% Similarity=0.464 Sum_probs=186.3
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++|+ ++.+|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.++|.++.. +...+|+.+||
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 2 SIRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 389999999996 4679999999999999999999999999999999999999999999999999977 45678899999
Q ss_pred EcCCCCCCch-hHHHHHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 538 VPQDTVLFND-TIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
+||++.+|.+ |++||+.+... ..+.++..+. +++.++.+ |++........+||||||||++|||||+.+|
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQR-----VEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999976 99999986421 1222222221 22333333 4444455566799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 615 PILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999999999999999998888999999999998765 999999999999999999999764
No 228
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-44 Score=378.43 Aligned_cols=219 Identities=31% Similarity=0.466 Sum_probs=189.6
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCC--CCHH
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLE 529 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-----~~G~I~idG~di~~--~~~~ 529 (709)
.-|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+..
T Consensus 19 ~~l~~~nl~~~~~~-~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 19 SVFEVEGVKVFYGG-FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred ceEEEeeEEEEeCC-eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 36999999999964 5799999999999999999999999999999999999864 69999999999864 3455
Q ss_pred HhhcceEEEcCCCCCCchhHHHHHHcCCCC-----CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 530 ~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~-----~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
.+|+.|+||+|++.+|+.|+.|||.++... ..++++.++++.+++.+++.. ........||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQRL 170 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHHH
Confidence 778999999999999999999999886311 123445666777776554432 23455678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEe---------CCEEEEe
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLE---------NGKVIEQ 674 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~---------~G~Ive~ 674 (709)
+|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|+ +|++++.
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~ 250 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF 250 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 999999999999999999999999999999999999877899999999999885 599999997 8999999
Q ss_pred cChHHHhhc
Q 005205 675 GSHDDLLTK 683 (709)
Q Consensus 675 Gth~eLl~~ 683 (709)
|+.+|+.+.
T Consensus 251 g~~~~~~~~ 259 (274)
T PRK14265 251 SPTEQMFGS 259 (274)
T ss_pred CCHHHHHhC
Confidence 999999754
No 229
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.6e-44 Score=376.26 Aligned_cols=225 Identities=26% Similarity=0.390 Sum_probs=187.0
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEe-----CCCCCHHH--
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD-----ICEVTLES-- 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~d-----i~~~~~~~-- 530 (709)
-|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+ +.+++...
T Consensus 6 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 6 LLSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred eEEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 4899999999964 689999999999999999999999999999999999999999999999999 88777655
Q ss_pred --hhcceEEEcCCCC--CC-chhHHHHHHcCC---CCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHH
Q 005205 531 --LRKSIGVVPQDTV--LF-NDTIFHNIRYGR---LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (709)
Q Consensus 531 --lR~~i~~V~Q~~~--LF-~gTIreNI~~g~---~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQ 602 (709)
+|+.++||+|++. ++ +.|+.|||.+.. ...+..++.+ .++++++.++-+ ++.+...+..|||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LS~Gq~q 158 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTTFSGGMQQ 158 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCccCCHHHHH
Confidence 3667999999984 33 358899986421 0111222221 245666666432 24567788999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHH
Q 005205 603 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDD 679 (709)
Q Consensus 603 RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~e 679 (709)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 159 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 238 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQ 238 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988754 789999999999997 599999999999999999999
Q ss_pred Hhhcc-cHHHH
Q 005205 680 LLTKA-GRYAQ 689 (709)
Q Consensus 680 Ll~~~-g~Y~~ 689 (709)
+.... ..|.+
T Consensus 239 ~~~~~~~~~~~ 249 (258)
T PRK11701 239 VLDDPQHPYTQ 249 (258)
T ss_pred HhcCCCCHHHH
Confidence 98543 33543
No 230
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-45 Score=377.09 Aligned_cols=226 Identities=28% Similarity=0.483 Sum_probs=190.3
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECC------EeCCCCCHHHh
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG------QDICEVTLESL 531 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG------~di~~~~~~~l 531 (709)
.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +++.+++...+
T Consensus 10 ~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~ 88 (257)
T PRK14246 10 VFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKL 88 (257)
T ss_pred heeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHH
Confidence 599999999996 46899999999999999999999999999999999999999997666654 67777788889
Q ss_pred hcceEEEcCCCCCCch-hHHHHHHcCCC--CC-CHHH----HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 532 RKSIGVVPQDTVLFND-TIFHNIRYGRL--SA-TEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 532 R~~i~~V~Q~~~LF~g-TIreNI~~g~~--~~-s~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
|+.++|++|++.+|.+ |++|||.++.. .. ++++ +.++++..++++++. ....+.+..||||||||
T Consensus 89 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~qr 161 (257)
T PRK14246 89 RKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQQR 161 (257)
T ss_pred hcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHHHH
Confidence 9999999999999976 99999987632 11 2223 344455555543321 22345677899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++||||++.+|++|||||||++||..+++.+.+.|+++.+++|+|+|||+++.+ +.||++++|++|++++.|+++|+.+
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~ 241 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFT 241 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999999887789999999999998 5699999999999999999999986
Q ss_pred c-ccHHHHHH
Q 005205 683 K-AGRYAQLW 691 (709)
Q Consensus 683 ~-~g~Y~~l~ 691 (709)
. ...|.+.|
T Consensus 242 ~~~~~~~~~~ 251 (257)
T PRK14246 242 SPKNELTEKY 251 (257)
T ss_pred CCCcHHHHHH
Confidence 4 33455444
No 231
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=378.22 Aligned_cols=213 Identities=31% Similarity=0.482 Sum_probs=185.5
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCC--------CCEEEECCEeCCCCCHHH
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH--------SGSIRIDGQDICEVTLES 530 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~--------~G~I~idG~di~~~~~~~ 530 (709)
|+++|++++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.+++...
T Consensus 2 l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 2 LTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred eEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 78999999995 468999999999999999999999999999999999999998 999999999999888888
Q ss_pred hhcceEEEcCCCC-CCchhHHHHHHcCC-CCC------C---HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChH
Q 005205 531 LRKSIGVVPQDTV-LFNDTIFHNIRYGR-LSA------T---EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG 599 (709)
Q Consensus 531 lR~~i~~V~Q~~~-LF~gTIreNI~~g~-~~~------s---~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG 599 (709)
+++.++||||++. +|..|++|||.++. +.. + ++.+.++++.. |+++.++.....||||
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG 149 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA-----------GATALVGRDVTTLSGG 149 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc-----------CcHhhhcCCcccCCHH
Confidence 8999999999986 67899999998863 111 1 12233333333 4555566677899999
Q ss_pred HHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEe
Q 005205 600 EKQRVALARAFL---------KAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLE 667 (709)
Q Consensus 600 QrQRiaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~ 667 (709)
||||++|||||+ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|+
T Consensus 150 ~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~ 229 (272)
T PRK13547 150 ELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLA 229 (272)
T ss_pred HHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 999999999999 59999999999999999999999999998754 789999999999986 599999999
Q ss_pred CCEEEEecChHHHhhc
Q 005205 668 NGKVIEQGSHDDLLTK 683 (709)
Q Consensus 668 ~G~Ive~Gth~eLl~~ 683 (709)
+|+|++.|+++++++.
T Consensus 230 ~G~i~~~g~~~~~~~~ 245 (272)
T PRK13547 230 DGAIVAHGAPADVLTP 245 (272)
T ss_pred CCeEEEecCHHHHcCH
Confidence 9999999999999763
No 232
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=8.6e-45 Score=370.82 Aligned_cols=212 Identities=31% Similarity=0.477 Sum_probs=172.5
Q ss_pred EEEEeEEEEecCC---cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC---CCCCEEEECCEeCCCCCHHHhh
Q 005205 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD---THSGSIRIDGQDICEVTLESLR 532 (709)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~---p~~G~I~idG~di~~~~~~~lR 532 (709)
++|+||+|+|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999864 689999999999999999999999999999999999999 99999999999875 35788
Q ss_pred cceEEEcCCCCCCch-hHHHHHHcCCCCCCHHHHHHHHHHHchHH-HHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 533 KSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHD-TIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 533 ~~i~~V~Q~~~LF~g-TIreNI~~g~~~~s~~ei~~A~~~a~l~~-~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
+.++||+|++.+|++ |++|||.++......+...++.+...+++ .+..+ |++.........||||||||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 999999999999987 99999987532110000011111111222 22221 233233345679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCc--hHHhhcCeEEEEeCCEEEEec
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRL--TTAMQCDEIIVLENGKVIEQG 675 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRl--sti~~aD~Iivl~~G~Ive~G 675 (709)
+++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++ ...+.||+|++|++|+|++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998875 478999999998 356679999999999999876
No 233
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=391.64 Aligned_cols=211 Identities=31% Similarity=0.479 Sum_probs=184.9
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC----CHHHhhcc
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLESLRKS 534 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~----~~~~lR~~ 534 (709)
|++ ||+++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+. +...++++
T Consensus 2 l~~-~l~k~~~~-~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLGD-LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeCC-EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 677 99999964 32 3 89999999999999999999999999999999999999999999998753 24567889
Q ss_pred eEEEcCCCCCCc-hhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 535 IGVVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 535 i~~V~Q~~~LF~-gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
++||+|++.+|. .|++|||.++.+...++++.++++..++.++..+. ..+||||||||++|||||+++
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qRvalaraL~~~ 146 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRY-----------PGSLSGGEKQRVAIGRALLTA 146 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCC-----------cccCCHHHHHHHHHHHHHHcC
Confidence 999999999996 59999999985544566777777777766555444 358999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhcc
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++|+....
T Consensus 147 p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 147 PELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 999999999999999999999999988754 6899999999997755 9999999999999999999998753
No 234
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.3e-44 Score=374.11 Aligned_cols=226 Identities=24% Similarity=0.419 Sum_probs=187.6
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC----CCCEEEECCEeCCCCCHHHhhc
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT----HSGSIRIDGQDICEVTLESLRK 533 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p----~~G~I~idG~di~~~~~~~lR~ 533 (709)
.|+++||+|+| ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +..++
T Consensus 4 ~l~~~~l~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA--AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRGR 79 (254)
T ss_pred EEEEeCeEEEe--ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccccc
Confidence 59999999999 46899999999999999999999999999999999999999 999999999998632 22346
Q ss_pred ceEEEcCCCC-CCc--hhHHHHHHcC----CCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 005205 534 SIGVVPQDTV-LFN--DTIFHNIRYG----RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (709)
Q Consensus 534 ~i~~V~Q~~~-LF~--gTIreNI~~g----~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaI 606 (709)
.++||+|++. .|. .|+.+|+.+. .....++++.++++..++.++ ++.++.....||||||||++|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~l 151 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMMI 151 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHHH
Confidence 7999999985 454 5888887542 112334566667776665432 234566678999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhc
Q 005205 607 ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 607 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999999999999999988753 789999999999986 5999999999999999999999865
Q ss_pred c-c-HHHHHHHhhh
Q 005205 684 A-G-RYAQLWGQQN 695 (709)
Q Consensus 684 ~-g-~Y~~l~~~q~ 695 (709)
. . ..+.++..+.
T Consensus 232 ~~~~~~~~~~~~~~ 245 (254)
T PRK10418 232 PKHAVTRSLVSAHL 245 (254)
T ss_pred CCCHHHHHHHHhhh
Confidence 3 2 3455665553
No 235
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-44 Score=386.59 Aligned_cols=228 Identities=26% Similarity=0.372 Sum_probs=187.2
Q ss_pred eEEEEeEEEEecC---CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC----CCCCEEEECCEeCCCCCHHH
Q 005205 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD----THSGSIRIDGQDICEVTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~----p~~G~I~idG~di~~~~~~~ 530 (709)
-|+++||+++|+. ..++|+||||+|++||++||||+||||||||+++|+|+.+ |++|+|++||+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3899999999962 3479999999999999999999999999999999999986 58999999999999888776
Q ss_pred hh----cceEEEcCCCCC--C-chhHHHHHHcCC------C----C--CCHHHHHHHHHHHchHHHHHhCCCCccccccC
Q 005205 531 LR----KSIGVVPQDTVL--F-NDTIFHNIRYGR------L----S--ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGE 591 (709)
Q Consensus 531 lR----~~i~~V~Q~~~L--F-~gTIreNI~~g~------~----~--~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe 591 (709)
++ +.|+||+|+|.. + ..||.+||.... . . ..++++.++++..++.+.- .....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhC
Confidence 53 479999999973 3 358999986421 0 0 0123455666666664311 11233
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeC
Q 005205 592 RGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLEN 668 (709)
Q Consensus 592 ~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~ 668 (709)
....||||||||++|||||+.+|+|||||||||+||+.+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 4569999999999999999999999999999999999999999999998764 7899999999999965 999999999
Q ss_pred CEEEEecChHHHhhc-ccHHHH-HHHh
Q 005205 669 GKVIEQGSHDDLLTK-AGRYAQ-LWGQ 693 (709)
Q Consensus 669 G~Ive~Gth~eLl~~-~g~Y~~-l~~~ 693 (709)
|+|+|.|+.+++.+. ...|.+ ++..
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~ll~~ 261 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQALIRA 261 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999999864 345754 4443
No 236
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.9e-44 Score=366.78 Aligned_cols=202 Identities=29% Similarity=0.458 Sum_probs=175.4
Q ss_pred EEEEeEEEEecCC---cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH---Hhh
Q 005205 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLR 532 (709)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~---~lR 532 (709)
|+++||++.|++. +++|+|+||++++|+++||+|+||||||||+++|+|+++|++|+|++||+++.+++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999742 6799999999999999999999999999999999999999999999999999877743 468
Q ss_pred cceEEEcCCCCCCc-hhHHHHHHcCCC---CCCHH----HHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 533 KSIGVVPQDTVLFN-DTIFHNIRYGRL---SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 533 ~~i~~V~Q~~~LF~-gTIreNI~~g~~---~~s~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
+.++||||++.+|. .|+.||+.++.. ..+.+ ++.++++..++.+++.+. ..+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYY-----------PHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHH
Confidence 89999999999998 699999987632 22322 344455555555444443 458999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhhcCeEEEEeCCEE
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGKV 671 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~aD~Iivl~~G~I 671 (709)
+||||++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999988763 7999999999998888999999999986
No 237
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.9e-44 Score=386.47 Aligned_cols=217 Identities=30% Similarity=0.478 Sum_probs=185.2
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+++|+ +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|+|+.+.+ ..+|+.|||
T Consensus 41 ~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig~ 118 (340)
T PRK13536 41 AIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGV 118 (340)
T ss_pred eEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEEE
Confidence 599999999996 467999999999999999999999999999999999999999999999999998654 578899999
Q ss_pred EcCCCCCC-chhHHHHHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 538 VPQDTVLF-NDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 538 V~Q~~~LF-~gTIreNI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
|||++.+| ..|++||+.+... ..+.++..+.++. +.++ ..|++..++.+ .+||||||||++|||||+.+|
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~-~~L~~~~~~~~----~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEF-ARLESKADARV----SDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHH-cCCchhhCCCh----hhCCHHHHHHHHHHHHHhcCC
Confidence 99999986 5699999986321 1233333332221 1221 24555566665 479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 615 PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+|++.|+.+++.+.
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999998875 47999999999999865 999999999999999999999764
No 238
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.5e-44 Score=382.76 Aligned_cols=204 Identities=27% Similarity=0.491 Sum_probs=174.3
Q ss_pred EecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCc
Q 005205 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN 546 (709)
Q Consensus 467 ~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~ 546 (709)
+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.+|||||++.+|.
T Consensus 2 ~y~-~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 2 VYG-DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred eeC-CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCC
Confidence 464 4679999999999999999999999999999999999999999999999999976 44677899999999999997
Q ss_pred h-hHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 005205 547 D-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLC 619 (709)
Q Consensus 547 g-TIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILIL 619 (709)
. |++|||.++.. ..+. +++.++++..++.+ .......+||||||||++|||||+++|++|||
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 148 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGE-----------AADRPVGTYSGGMRRRLDIAASLIHQPDVLFL 148 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhCCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6 99999987421 1222 23444444444432 22334468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 620 DEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 620 DEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+|++.|+++++.+.
T Consensus 149 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 149 DEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999999999998875 47999999999999875 999999999999999999999764
No 239
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-44 Score=370.97 Aligned_cols=202 Identities=27% Similarity=0.442 Sum_probs=172.3
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+||.++... ++.++||
T Consensus 2 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~v 75 (255)
T PRK11248 2 LQISHLYADYGG-KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGVV 75 (255)
T ss_pred EEEEEEEEEeCC-eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEEE
Confidence 789999999964 6899999999999999999999999999999999999999999999999998653 3469999
Q ss_pred cCCCCCCc-hhHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 539 PQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 539 ~Q~~~LF~-gTIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
+|++.+|. .|++||+.++.. ..+. +++.++++..++.+. ......+||||||||++|||||+
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGA-----------EKRYIWQLSGGQRQRVGIARALA 144 (255)
T ss_pred eCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hhCChhhCCHHHHHHHHHHHHHh
Confidence 99999987 699999987521 1222 234444444444332 33455789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEe--CCEEEEecCh
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLE--NGKVIEQGSH 677 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~--~G~Ive~Gth 677 (709)
.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|+ +|+|++.++.
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999873 37999999999998755 99999998 5999999865
No 240
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=6.7e-44 Score=387.04 Aligned_cols=208 Identities=32% Similarity=0.501 Sum_probs=177.4
Q ss_pred eEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC----HHHhhcceEEE
Q 005205 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESLRKSIGVV 538 (709)
Q Consensus 463 nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~----~~~lR~~i~~V 538 (709)
||+++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+.++||
T Consensus 4 ~l~~~~~~-~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGD-FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECC-EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 89999964 34 4 999999999999999999999999999999999999999999999987543 34678899999
Q ss_pred cCCCCCCch-hHHHHHHcCCCCCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 539 PQDTVLFND-TIFHNIRYGRLSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 539 ~Q~~~LF~g-TIreNI~~g~~~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
+|++.+|.. |++||+.++...... +++.++++..++ +.........||||||||++|||||+.+
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGI-----------GHLLGRLPGRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCC-----------hhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999975 999999987432222 223444444444 4344445578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhcc
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++....
T Consensus 150 p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 150 PRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 999999999999999999999999998754 7899999999998865 9999999999999999999998653
No 241
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=9.7e-44 Score=368.16 Aligned_cols=219 Identities=24% Similarity=0.356 Sum_probs=173.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCCCEEEECCEeCCCCCHHHhh-cce
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESLR-KSI 535 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl--y~p~~G~I~idG~di~~~~~~~lR-~~i 535 (709)
|+++||+++|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+ ++|++|+|.+||.++.+++....+ +.+
T Consensus 2 i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 2 LSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred eEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 78999999997 46799999999999999999999999999999999999 579999999999999888877665 579
Q ss_pred EEEcCCCCCCch-hHHHHHHcCCCCC---CHHHHHHHHH-HHchHHHHH--hCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 536 GVVPQDTVLFND-TIFHNIRYGRLSA---TEEEVYDAAR-RAAIHDTIM--NFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 536 ~~V~Q~~~LF~g-TIreNI~~g~~~~---s~~ei~~A~~-~a~l~~~I~--~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
+||+|++.++.. |..+|+.+..... ..++..+..+ ...+.+.++ .+|+++.+... ...||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~LS~G~~qrv~lar 158 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV--NVGFSGGEKKRNDILQ 158 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC--CCCCCHHHHHHHHHHH
Confidence 999999987764 4444443211000 0000000000 011122222 35555544322 2379999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchHHhh--cCeEEEEeCCEEEEecChHHH
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQ--CDEIIVLENGKVIEQGSHDDL 680 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRlsti~~--aD~Iivl~~G~Ive~Gth~eL 680 (709)
|++++|+||||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|++++.
T Consensus 159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 99999999999999999999999999999988754 6899999999999987 899999999999999999855
No 242
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.6e-43 Score=360.66 Aligned_cols=205 Identities=23% Similarity=0.371 Sum_probs=178.4
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ++.++|+
T Consensus 1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGSL 75 (223)
T ss_pred CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEEE
Confidence 57899999996 468999999999999999999999999999999999999999999999999876422 3579999
Q ss_pred cCCCCCCc-hhHHHHHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 539 PQDTVLFN-DTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 539 ~Q~~~LF~-gTIreNI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
||++.+|. .|++||+.++.. ..+++++.++++..++.+.... ....||||||||++||||++++|+
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~p~ 144 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNHPK 144 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999886 699999986421 2345677777777776654332 346899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHH
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDD 679 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~e 679 (709)
+|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+. .||+|++|++|+|++.|+.++
T Consensus 145 llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 145 LLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999998875 4789999999999885 599999999999999998765
No 243
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-43 Score=348.73 Aligned_cols=172 Identities=46% Similarity=0.682 Sum_probs=160.9
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC--HHHhhcceE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT--LESLRKSIG 536 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~--~~~lR~~i~ 536 (709)
|+++|++|+|+ ++++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++ ...+++.++
T Consensus 1 i~~~~l~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEEC-CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 57999999996 467999999999999999999999999999999999999999999999999998886 677889999
Q ss_pred EEcCCCCCCc-hhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 537 VVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 537 ~V~Q~~~LF~-gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
|++|++.+|. .|++||+.+. ||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 9999999986 5999999764 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCE
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGK 670 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~ 670 (709)
++||||||++||+.+...+.+.|+++.+ ++|+|++||++..+. .||+|++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999988765 589999999999998 599999999985
No 244
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-43 Score=346.80 Aligned_cols=170 Identities=34% Similarity=0.652 Sum_probs=159.1
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
++++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++||
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYL 78 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEE
Confidence 478999999964 57999999999999999999999999999999999999999999999999998776 6788999999
Q ss_pred cCCCCCCch-hHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 005205 539 PQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (709)
Q Consensus 539 ~Q~~~LF~g-TIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~IL 617 (709)
+|++.+|.+ |++||+. ||||||||++|||||+++|++|
T Consensus 79 ~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 79 PEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred ecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 999999986 9999984 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEE
Q 005205 618 LCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKV 671 (709)
Q Consensus 618 ILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~I 671 (709)
||||||++||+.+.+.+.+.|+++. ++.|+|++||+.+.+. .||+|++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999875 4689999999999887 5999999999974
No 245
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-43 Score=370.89 Aligned_cols=210 Identities=30% Similarity=0.446 Sum_probs=176.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++|++++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ...++.++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~~ 82 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVAY 82 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEEE
Confidence 59999999999755789999999999999999999999999999999999999999999999998752 122346999
Q ss_pred EcCCCCC---CchhHHHHHHcCCC---------C-CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 538 VPQDTVL---FNDTIFHNIRYGRL---------S-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 538 V~Q~~~L---F~gTIreNI~~g~~---------~-~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
|||++.+ +..++++|+.++.. . ..++++.++++..++.++. |+. ...||||||||+
T Consensus 83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~----~~~LSgG~~qrv 151 (272)
T PRK15056 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-------HRQ----IGELSGGQKKRV 151 (272)
T ss_pred eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-------cCC----cccCCHHHHHHH
Confidence 9999865 56689999875421 0 1123455666666665543 233 347999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhh
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
+|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+++++ +|++++.|+++++..
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 99999999999999999999999999999999998875 478999999999887 459999777 899999999999864
No 246
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=3.4e-43 Score=365.24 Aligned_cols=218 Identities=28% Similarity=0.416 Sum_probs=183.0
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEe-----CCCCCHHH--
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD-----ICEVTLES-- 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~d-----i~~~~~~~-- 530 (709)
.|+++||+++|++ .++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.+ +.+++...
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYGG-GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeCC-ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 4899999999964 579999999999999999999999999999999999999999999999988 77777654
Q ss_pred --hhcceEEEcCCCC--C-CchhHHHHHHcCC--CC-CCHHHHHHHHHHHchHHHHHhCCCCcc-ccccCCCCCCChHHH
Q 005205 531 --LRKSIGVVPQDTV--L-FNDTIFHNIRYGR--LS-ATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGEK 601 (709)
Q Consensus 531 --lR~~i~~V~Q~~~--L-F~gTIreNI~~g~--~~-~s~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQr 601 (709)
+++.++|++|++. + +..|+.+|+.++. .. ....+. ...++++++.++ ++ +........||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~--l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVE--IDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcC--CChhhhhcCchhcCHHHH
Confidence 3467999999984 2 3458889986421 00 011111 134456677763 43 456777889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChH
Q 005205 602 QRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHD 678 (709)
Q Consensus 602 QRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~ 678 (709)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ +.|+|+|||++..+.. ||++++|++|++++.|+++
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~ 234 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTD 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999988643 7999999999999884 9999999999999999999
Q ss_pred HHhhc
Q 005205 679 DLLTK 683 (709)
Q Consensus 679 eLl~~ 683 (709)
++...
T Consensus 235 ~~~~~ 239 (253)
T TIGR02323 235 QVLDD 239 (253)
T ss_pred HHhcC
Confidence 99754
No 247
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-43 Score=354.49 Aligned_cols=189 Identities=29% Similarity=0.416 Sum_probs=164.3
Q ss_pred eEEEEeEEEEecC---CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC---CCCCEEEECCEeCCCCCHHHh
Q 005205 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD---THSGSIRIDGQDICEVTLESL 531 (709)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~---p~~G~I~idG~di~~~~~~~l 531 (709)
.+.++||+|.|+. ++++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 4789999999983 5689999999999999999999999999999999999999 89999999999998775 467
Q ss_pred hcceEEEcCCCCCCch-hHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 532 RKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 532 R~~i~~V~Q~~~LF~g-TIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|+.++||+|++.+|.+ |++|||.++.. . . ..+....||||||||++|||||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~------~----~------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR------C----K------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh------h----c------------------cccchhhCCHHHHHHHHHHHHH
Confidence 8899999999988874 99999987531 0 0 2234468999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEec-CchHH-hhcCeEEEEeCCEEEEec
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAH-RLTTA-MQCDEIIVLENGKVIEQG 675 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaH-Rlsti-~~aD~Iivl~~G~Ive~G 675 (709)
+++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+++| ++..+ +.||+|++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998764 467676655 45554 679999999999999865
No 248
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-43 Score=357.48 Aligned_cols=205 Identities=31% Similarity=0.476 Sum_probs=171.5
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC----CHHHhhcc
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLESLRKS 534 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~----~~~~lR~~ 534 (709)
+++ ||+++|++ +.+ |+||+|++ |+++|+|+||||||||+++|+|+++|++|+|.++|.++.+. +...+|+.
T Consensus 2 ~~~-~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 2 LCV-DIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred cee-eeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 355 89999975 444 99999999 99999999999999999999999999999999999998643 23457889
Q ss_pred eEEEcCCCCCCc-hhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 535 IGVVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 535 i~~V~Q~~~LF~-gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
++||+|++.+|. .|++||+.++....+.++ ....+.++++.+ |++..+......||||||||++||||++.+
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAAQ 149 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999996 599999987643222111 112233444444 455555667789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEec
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQG 675 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~G 675 (709)
|+||||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 150 PELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999988753 789999999999885 59999999999999876
No 249
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.8e-43 Score=352.38 Aligned_cols=181 Identities=34% Similarity=0.542 Sum_probs=163.8
Q ss_pred eEEEEeEEEEecC-----CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCC--CCCCCEEEECCEeCCCCCHHH
Q 005205 458 SIQFDNVHFSYLT-----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF--DTHSGSIRIDGQDICEVTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~-----~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly--~p~~G~I~idG~di~~~~~~~ 530 (709)
.|+++||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 5899999999975 368999999999999999999999999999999999999 9999999999998875 36
Q ss_pred hhcceEEEcCCCCCCch-hHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 005205 531 LRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~g-TIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
+|+.++|++|++.+|.+ |++||+.++.. + . .||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~------~---------~-------------------~LS~G~~qrv~lara 125 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK------L---------R-------------------GLSGGERKRVSIALE 125 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH------h---------c-------------------cCCHHHHHHHHHHHH
Confidence 78899999999999874 99999976421 0 0 899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCch-HH-hhcCeEEEEeCCEEEEec
Q 005205 610 FLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLT-TA-MQCDEIIVLENGKVIEQG 675 (709)
Q Consensus 610 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRls-ti-~~aD~Iivl~~G~Ive~G 675 (709)
|+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++ .+ +.||+|++|++|++++.|
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999875 4899999999997 44 459999999999998765
No 250
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2e-43 Score=343.21 Aligned_cols=164 Identities=33% Similarity=0.466 Sum_probs=153.6
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+++|++++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++||
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~ 69 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFL 69 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEE
Confidence 579999999975568999999999999999999999999999999999999999999999883 689999
Q ss_pred cCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 005205 539 PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILL 618 (709)
Q Consensus 539 ~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILI 618 (709)
+|++.+|++|++|||.++ ....||||||||++||||++++|++||
T Consensus 70 ~q~~~~~~~tv~~nl~~~-----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 70 PQRPYLPLGTLREQLIYP-----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred CCCCccccccHHHHhhcc-----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999999999999999874 247899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCE
Q 005205 619 CDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGK 670 (709)
Q Consensus 619 LDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~ 670 (709)
|||||++||+++.+.+.+.|+++ ++|+|+|||+++....||+|++|++|-
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999886 689999999999999999999998763
No 251
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-43 Score=351.85 Aligned_cols=180 Identities=29% Similarity=0.480 Sum_probs=162.8
Q ss_pred eEEEEeEEEEecC---CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCC--CCCCCEEEECCEeCCCCCHHHhh
Q 005205 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF--DTHSGSIRIDGQDICEVTLESLR 532 (709)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly--~p~~G~I~idG~di~~~~~~~lR 532 (709)
.|+++||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 5899999999974 267999999999999999999999999999999999986 489999999999886 5678
Q ss_pred cceEEEcCCCCCCch-hHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 533 KSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 533 ~~i~~V~Q~~~LF~g-TIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
++++|++|++.+|.. |++||+.++.. ++ .||||||||++||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~----------~~------------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL----------LR------------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH----------Hh------------------------cCCHHHhHHHHHHHHHh
Confidence 899999999988875 99999986420 00 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchH--HhhcCeEEEEeC-CEEEEec
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTT--AMQCDEIIVLEN-GKVIEQG 675 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlst--i~~aD~Iivl~~-G~Ive~G 675 (709)
++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++. .+.||+|++|++ |+|++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999875 47999999999983 577999999999 9999876
No 252
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-43 Score=344.38 Aligned_cols=170 Identities=58% Similarity=0.882 Sum_probs=162.5
Q ss_pred EEEEeEEEEecCC-cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 459 I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
|+++|++++|++. .++++|+||+|++|+.++|+||+|||||||+++|+|+++|++|+|.++|.++.+++...+|+.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 5789999999753 379999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 005205 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (709)
Q Consensus 538 V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~IL 617 (709)
++|++.+|+.|+.||+ ||||||||++||||++.+|++|
T Consensus 81 ~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 81 VPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCE
Q 005205 618 LCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGK 670 (709)
Q Consensus 618 ILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~ 670 (709)
||||||++||+.+.+.+.+.|+++.+++|+|++||++..++.||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 99999999999999999999998877899999999999999999999999985
No 253
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-43 Score=358.62 Aligned_cols=213 Identities=32% Similarity=0.532 Sum_probs=182.9
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCE---eCCCCCHHHhhcc
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ---DICEVTLESLRKS 534 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~---di~~~~~~~lR~~ 534 (709)
.|+++|++..|+ ..++++||||+|+.||.+|+.||||||||||+++|+||..|++|.|.+||. |.++.+ .-.++
T Consensus 2 ~i~i~~~~~~~~-~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFG-AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRDRK 78 (345)
T ss_pred ceeehhhhhhcc-cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhhcc
Confidence 478899998885 467999999999999999999999999999999999999999999999999 666633 34467
Q ss_pred eEEEcCCCCCC-chhHHHHHHcCC------CC--CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 005205 535 IGVVPQDTVLF-NDTIFHNIRYGR------LS--ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (709)
Q Consensus 535 i~~V~Q~~~LF-~gTIreNI~~g~------~~--~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRia 605 (709)
||+|+|+.-|| +.||+|||+||- |+ ..+.++.+.++.+++.++=+..| .+||||||||+|
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHH
Confidence 99999999998 579999999995 21 22345555566666665544444 689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCch-HHhhcCeEEEEeCCEEEEecChHHHhh
Q 005205 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLT-TAMQCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 606 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRls-ti~~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
|||||...|++|+||||.+|||+.--+.+.+-|+++.. +.|+++|||+.. +.+.||||+||++|+|.+.|+++|...
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 99999999999999999999999999999999887753 689999999987 466799999999999999999999976
Q ss_pred cc
Q 005205 683 KA 684 (709)
Q Consensus 683 ~~ 684 (709)
..
T Consensus 228 ~P 229 (345)
T COG1118 228 HP 229 (345)
T ss_pred CC
Confidence 53
No 254
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.7e-43 Score=369.79 Aligned_cols=214 Identities=34% Similarity=0.568 Sum_probs=189.6
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+..|..++.+|+||||+|++|+++|++||+|||||||+|+|+|+..|++|+|.++|.|...- ...+|++|||
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy 82 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGY 82 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEE
Confidence 488999999996457899999999999999999999999999999999999999999999999998766 7889999999
Q ss_pred EcCCCCCCch-hHHHHHHcCC-----C-CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 538 VPQDTVLFND-TIFHNIRYGR-----L-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~-----~-~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|||+|.++.. |++||+.|.. + ...++++.+.++..++.+.- ...-..||+|||||++||+||
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALAL 151 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHHH
Confidence 9999998865 9999997742 2 12345677777777765411 334568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLAN-N-RTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~-~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
+.+|++||||||||+||+.+...+.+.|+++.+ + +|+++.||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 999999999999999999999999999999875 4 799999999999988 999999999999999999998754
No 255
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.7e-43 Score=347.68 Aligned_cols=172 Identities=31% Similarity=0.558 Sum_probs=158.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHhhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~-~~lR~~i~ 536 (709)
-|+++|++++| +|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++. ..+|+.++
T Consensus 4 ~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 4 VLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred EEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 48999999999 8999999999999999999999999999999999999999999999999998874 56788999
Q ss_pred EEcCCC----CCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 005205 537 VVPQDT----VLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (709)
Q Consensus 537 ~V~Q~~----~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~ 612 (709)
||+|++ .+++.|++||+.++.+ ||||||||++||||++.
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSSL-------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHhh-------------------------------------cCHHHHHHHHHHHHHcc
Confidence 999995 3456799999987531 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEE
Q 005205 613 APPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKV 671 (709)
Q Consensus 613 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~I 671 (709)
+|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999998875 47999999999998877 999999999975
No 256
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=4.8e-43 Score=363.85 Aligned_cols=213 Identities=24% Similarity=0.329 Sum_probs=177.3
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCCCEEEECCEeCCCCCHHHhhc-c
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESLRK-S 534 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl--y~p~~G~I~idG~di~~~~~~~lR~-~ 534 (709)
-|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||.++.+++....++ .
T Consensus 7 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 7 ILEIKNLHASVN-ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred eEEEEeEEEEeC-CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 499999999996 45799999999999999999999999999999999998 7899999999999999988776665 4
Q ss_pred eEEEcCCCCCCch-hHHHHHHcCCC---------CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHH
Q 005205 535 IGVVPQDTVLFND-TIFHNIRYGRL---------SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (709)
Q Consensus 535 i~~V~Q~~~LF~g-TIreNI~~g~~---------~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 600 (709)
+++++|++.+|.+ |+.+|+.++.. +.+. +++.++++..++.+ .-.+..++ ..|||||
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~---~~LSgG~ 156 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP------SFLSRNVN---EGFSGGE 156 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch------hhhccccc---cCCCHHH
Confidence 8999999999986 89999876421 0111 12233343333321 11222222 1599999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh--cCeEEEEeCCEEEEecCh
Q 005205 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ--CDEIIVLENGKVIEQGSH 677 (709)
Q Consensus 601 rQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~--aD~Iivl~~G~Ive~Gth 677 (709)
|||++|||||+++|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~ 236 (252)
T CHL00131 157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDA 236 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecCh
Confidence 999999999999999999999999999999999999998875 47999999999999875 899999999999999999
Q ss_pred HHH
Q 005205 678 DDL 680 (709)
Q Consensus 678 ~eL 680 (709)
+++
T Consensus 237 ~~~ 239 (252)
T CHL00131 237 ELA 239 (252)
T ss_pred hhh
Confidence 844
No 257
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=5.7e-43 Score=350.53 Aligned_cols=185 Identities=25% Similarity=0.408 Sum_probs=164.8
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCCCEEEECCEeCCCCCHHHh-hcce
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKSI 535 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl--y~p~~G~I~idG~di~~~~~~~l-R~~i 535 (709)
++++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||+++.+.+.... |..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 47899999996 46899999999999999999999999999999999999 68999999999999999887654 5569
Q ss_pred EEEcCCCCCCch-hHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 536 GVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 536 ~~V~Q~~~LF~g-TIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
+||||++.+|.+ |+++|+ .. ....||||||||++||||++++|
T Consensus 80 ~~v~q~~~~~~~~~~~~~l-------------------------~~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL-------------------------RY-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEeecChhhccCccHHHHH-------------------------hh-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 444444 01 12479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchHHh--hcCeEEEEeCCEEEEecChHHHh
Q 005205 615 PILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAM--QCDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRlsti~--~aD~Iivl~~G~Ive~Gth~eLl 681 (709)
+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.| +.|+.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999999998754 789999999999998 69999999999999999 45554
No 258
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=9.8e-43 Score=360.61 Aligned_cols=208 Identities=28% Similarity=0.488 Sum_probs=183.2
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +..++|
T Consensus 4 ~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~~ 71 (251)
T PRK09544 4 LVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGY 71 (251)
T ss_pred EEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEEE
Confidence 489999999996 46799999999999999999999999999999999999999999999987 347999
Q ss_pred EcCCCCCCc---hhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 538 VPQDTVLFN---DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 538 V~Q~~~LF~---gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
+||++.++. .|+++|+.+. +..+++++.++++..++.+++.. ....||||||||++||||++.+|
T Consensus 72 v~q~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 72 VPQKLYLDTTLPLTVNRFLRLR-PGTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred eccccccccccChhHHHHHhcc-ccccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 999998865 4899998764 34567788888988888776543 24689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhcccHHHHHH
Q 005205 615 PILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW 691 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~ 691 (709)
++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++ +|++.|+++|+.+ ...|.++|
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~~~~ 217 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFISMF 217 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHHHHh
Confidence 99999999999999999999999988753 789999999999985 5999999965 7999999999874 45676766
No 259
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=3.6e-43 Score=353.63 Aligned_cols=194 Identities=33% Similarity=0.512 Sum_probs=165.5
Q ss_pred EEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH----HHhhcceE
Q 005205 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL----ESLRKSIG 536 (709)
Q Consensus 461 f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~----~~lR~~i~ 536 (709)
++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...|+.++
T Consensus 1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 479999996 4689999999999999999999999999999999999999999999999999765542 34678999
Q ss_pred EEcCCCCCCc-hhHHHHHHcCCCC--C----CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 005205 537 VVPQDTVLFN-DTIFHNIRYGRLS--A----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 537 ~V~Q~~~LF~-gTIreNI~~g~~~--~----s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
||+|++.+|. .|++||+.++... . .++++.++++..++.++. .....+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qr~~lara 148 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-----------KQKIYELSGGEQQRVALARA 148 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-----------cCChhhCCHHHHHHHHHHHH
Confidence 9999999997 6999999875321 1 133455555555554432 33446799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEE
Q 005205 610 FLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL 666 (709)
Q Consensus 610 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl 666 (709)
|+++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+..||+|++|
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999999999998875 479999999999999999999886
No 260
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.9e-42 Score=358.34 Aligned_cols=221 Identities=29% Similarity=0.433 Sum_probs=180.9
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
++++||+++ .+|+|+||+|++||+++|+|+||||||||+++|+|+++ .+|+|.+||.++.+.+...+++.++||
T Consensus 1 ~~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 1 MQLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred Ccccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 357788875 28999999999999999999999999999999999996 599999999999998888889999999
Q ss_pred cCCCC-CCchhHHHHHHcCCCC-CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc----
Q 005205 539 PQDTV-LFNDTIFHNIRYGRLS-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK---- 612 (709)
Q Consensus 539 ~Q~~~-LF~gTIreNI~~g~~~-~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~---- 612 (709)
||++. ++..|++||+.++.+. .+.++. ...+++.++.+ |++.........||||||||++|||||+.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAV-----ASALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHH-----HHHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 99985 5578999999987432 121111 11223334333 34434445567899999999999999997
Q ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhcccHH
Q 005205 613 ---APPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTKAGRY 687 (709)
Q Consensus 613 ---~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y 687 (709)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++++... ...
T Consensus 148 ~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~ 226 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTP-ENL 226 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhCc-hHH
Confidence 679999999999999999999999998875 478999999999965 56999999999999999999998753 344
Q ss_pred HHHHHh
Q 005205 688 AQLWGQ 693 (709)
Q Consensus 688 ~~l~~~ 693 (709)
.+.+..
T Consensus 227 ~~~~~~ 232 (248)
T PRK03695 227 AQVFGV 232 (248)
T ss_pred HHHhCC
Confidence 555543
No 261
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=6.9e-43 Score=344.11 Aligned_cols=177 Identities=38% Similarity=0.621 Sum_probs=162.0
Q ss_pred EEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEc
Q 005205 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (709)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 539 (709)
+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++|++
T Consensus 1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 57899999964 67999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred CCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 005205 540 QDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLC 619 (709)
Q Consensus 540 Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILIL 619 (709)
| +++..++.+++.. ....||||||||++||||++++|+++||
T Consensus 80 q---------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 80 Q---------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred H---------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9 6666677665443 3568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHH-hhcCeEEEEeCCEEEEec
Q 005205 620 DEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQG 675 (709)
Q Consensus 620 DEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~G 675 (709)
||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+ +.||+|++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999998765 78999999999997 569999999999998764
No 262
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.5e-42 Score=353.51 Aligned_cols=205 Identities=26% Similarity=0.428 Sum_probs=168.9
Q ss_pred cceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC----CCCEEEECCEeCCCCCHHHhhcceEEEcCCCC-CCc--
Q 005205 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT----HSGSIRIDGQDICEVTLESLRKSIGVVPQDTV-LFN-- 546 (709)
Q Consensus 474 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p----~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~-LF~-- 546 (709)
+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|++||+++... +..++.++||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998765 233468999999995 344
Q ss_pred hhHHHHHHcCCC--CC-C---HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 005205 547 DTIFHNIRYGRL--SA-T---EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCD 620 (709)
Q Consensus 547 gTIreNI~~g~~--~~-s---~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILD 620 (709)
-|+.||+.++.. .. . ++++.++++..++. ++ ++........||||||||++||||++++|+|||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLP-------DP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCC-------ch-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 589999864311 01 1 22344555544443 11 23455667899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhc-ccHHH
Q 005205 621 EATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK-AGRYA 688 (709)
Q Consensus 621 EaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~-~g~Y~ 688 (709)
|||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++... .+.|.
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 222 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETT 222 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHH
Confidence 99999999999999999998753 789999999999986 5999999999999999999999864 34443
No 263
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.8e-42 Score=331.92 Aligned_cols=159 Identities=33% Similarity=0.569 Sum_probs=149.0
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHhhcceEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIGV 537 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~-~~lR~~i~~ 537 (709)
|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+. +..|++++|
T Consensus 1 l~~~~l~~~~~~-~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFGG-VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 579999999964 589999999999999999999999999999999999999999999999999998876 456788999
Q ss_pred EcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 005205 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (709)
Q Consensus 538 V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~IL 617 (709)
++| ||||||||++||||++++|++|
T Consensus 80 ~~q-------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 80 VYQ-------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEe-------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 999 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEE
Q 005205 618 LCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIE 673 (709)
Q Consensus 618 ILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive 673 (709)
||||||++||+++.+.+.+.|+++. +++|+|++||++..+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999998874 47899999999997764 99999999999986
No 264
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=5.5e-42 Score=343.73 Aligned_cols=195 Identities=24% Similarity=0.368 Sum_probs=170.8
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||++.|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ..+|+.++|+
T Consensus 1 l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (201)
T cd03231 1 LEADELTCERD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLYL 78 (201)
T ss_pred CEEEEEEEEeC-CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEEe
Confidence 57899999996 467999999999999999999999999999999999999999999999999987654 5688999999
Q ss_pred cCCCCCC-chhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 005205 539 PQDTVLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (709)
Q Consensus 539 ~Q~~~LF-~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~IL 617 (709)
+|++.++ +.|++||+.+..+..+++++.++++..++.++.. + ...+||||||||++||||++++|++|
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LS~G~~qrl~laral~~~p~ll 147 (201)
T cd03231 79 GHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-------R----PVAQLSAGQQRRVALARLLLSGRPLW 147 (201)
T ss_pred ccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-------C----chhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999886 6899999988765456777888888888765432 2 23579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCch-HHhhcCeEEEE
Q 005205 618 LCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLT-TAMQCDEIIVL 666 (709)
Q Consensus 618 ILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRls-ti~~aD~Iivl 666 (709)
||||||++||+.+.+.+.+.|+++. +++|+|+|||+.. ....+|+++++
T Consensus 148 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 148 ILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999998764 4799999999865 55668998877
No 265
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=5.8e-42 Score=350.77 Aligned_cols=191 Identities=30% Similarity=0.442 Sum_probs=161.2
Q ss_pred ceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCc-hhHHHHH
Q 005205 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-DTIFHNI 553 (709)
Q Consensus 475 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~-gTIreNI 553 (709)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+.. .+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-----~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD-----RMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-----heEEecCcccCCCCCHHHHH
Confidence 5799999999999999999999999999999999999999999999999875542 489999999997 5999999
Q ss_pred HcCC----CCCCHHH----HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 005205 554 RYGR----LSATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSA 625 (709)
Q Consensus 554 ~~g~----~~~s~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSa 625 (709)
.++. +..++++ +.++++..++.+ ........||||||||++|||||+.+|++|||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTE-----------AADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHH-----------HHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 8752 2233332 333444444333 23334568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHh
Q 005205 626 LDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 626 LD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl 681 (709)
||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+|++.|+..+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998875 37899999999998764 9999999999999999876654
No 266
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-42 Score=389.65 Aligned_cols=217 Identities=24% Similarity=0.417 Sum_probs=181.7
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC--CCCEEEECCEeCCCCCHHH-hhcc
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQDICEVTLES-LRKS 534 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p--~~G~I~idG~di~~~~~~~-lR~~ 534 (709)
-|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... +|+.
T Consensus 5 ~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 5 LLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred eEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 489999999996 46899999999999999999999999999999999999996 8999999999998877654 4678
Q ss_pred eEEEcCCCCCCch-hHHHHHHcCCCC-----CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 535 IGVVPQDTVLFND-TIFHNIRYGRLS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 535 i~~V~Q~~~LF~g-TIreNI~~g~~~-----~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
++||||++.+|.. |++|||.++... .+.++..+. +.+.++.+ |++........+||||||||++|||
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la~ 156 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR-----AQKLLAQL--KLDINPATPVGNLGLGQQQLVEIAK 156 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHH-----HHHHHHHc--CCCCCcccchhhCCHHHHHHHHHHH
Confidence 9999999998865 999999886421 122222221 22333333 3333333445689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhh
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
||+.+|+|||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++..
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 232 (506)
T PRK13549 157 ALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE 232 (506)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCH
Confidence 9999999999999999999999999999998874 57899999999998865 99999999999999999887753
No 267
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.6e-42 Score=342.91 Aligned_cols=194 Identities=23% Similarity=0.327 Sum_probs=164.3
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.. ....+|++++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~ 79 (200)
T PRK13540 2 LDVIELDFDYHD-QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFV 79 (200)
T ss_pred EEEEEEEEEeCC-eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEe
Confidence 789999999964 679999999999999999999999999999999999999999999999999875 346788999999
Q ss_pred cCCCCCC-chhHHHHHHcCC-CCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 005205 539 PQDTVLF-NDTIFHNIRYGR-LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (709)
Q Consensus 539 ~Q~~~LF-~gTIreNI~~g~-~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~I 616 (709)
+|++.+| ..|++||+.++. ....++++.++++..++. +..+.++ ..||||||||++||||++++|++
T Consensus 80 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~----~~LS~G~~~rv~laral~~~p~~ 148 (200)
T PRK13540 80 GHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLE-------HLIDYPC----GLLSSGQKRQVALLRLWMSKAKL 148 (200)
T ss_pred ccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCc-------hhhhCCh----hhcCHHHHHHHHHHHHHhcCCCE
Confidence 9999986 579999999863 111223344444443332 2233333 46999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEE
Q 005205 617 LLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIV 665 (709)
Q Consensus 617 LILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iiv 665 (709)
|||||||++||+.+.+.+.+.|+++. +++|+|++||+.+.+.+||.-++
T Consensus 149 lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 149 WLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 99999999999999999999999863 57999999999999999997554
No 268
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=9.9e-42 Score=388.18 Aligned_cols=213 Identities=24% Similarity=0.419 Sum_probs=182.7
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhh-cceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLR-KSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR-~~i~ 536 (709)
-|+++||+++|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.++
T Consensus 11 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 89 (510)
T PRK15439 11 LLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY 89 (510)
T ss_pred eEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 599999999996 46799999999999999999999999999999999999999999999999999888776655 4699
Q ss_pred EEcCCCCCCch-hHHHHHHcCCCCC--CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 537 VVPQDTVLFND-TIFHNIRYGRLSA--TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~~~~--s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
||+|++.+|.. |++||+.++.... .++++.++++..++ +......-..||||||||++|||||+.+
T Consensus 90 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 90 LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGC-----------QLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCC-----------CccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999998875 9999999874321 12333444444433 2222334468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhh
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.|+++++..
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 99999999999999999999999998874 47899999999998764 99999999999999999998865
No 269
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=395.32 Aligned_cols=226 Identities=28% Similarity=0.403 Sum_probs=185.6
Q ss_pred eEEEEeEEEEecC----------CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC
Q 005205 458 SIQFDNVHFSYLT----------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (709)
Q Consensus 458 ~I~f~nVsF~Y~~----------~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~ 527 (709)
-|+++||++.|+. ..++|+||||+|++||++||||+||||||||+++|+|+.+|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 4999999999962 246999999999999999999999999999999999999999999999999998776
Q ss_pred HH---HhhcceEEEcCCCC--CCc-hhHHHHHHcCC--CCC-CH----HHHHHHHHHHchHHHHHhCCCCccccccCCCC
Q 005205 528 LE---SLRKSIGVVPQDTV--LFN-DTIFHNIRYGR--LSA-TE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGL 594 (709)
Q Consensus 528 ~~---~lR~~i~~V~Q~~~--LF~-gTIreNI~~g~--~~~-s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~ 594 (709)
.. .+|++|+||+|++. +|. .||.||+.++. ... +. +++.++++..++.+ ......-.
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~----------~~~~~~~~ 462 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP----------EHAWRYPH 462 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCH----------HHhhCCcc
Confidence 43 46789999999983 664 59999997631 011 12 23344444444421 11233345
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEE
Q 005205 595 KLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKV 671 (709)
Q Consensus 595 ~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~I 671 (709)
.||||||||++|||||+.+|++||||||||+||..+.+.|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999988753 7899999999998875 999999999999
Q ss_pred EEecChHHHhhc-ccHHH-HHHHh
Q 005205 672 IEQGSHDDLLTK-AGRYA-QLWGQ 693 (709)
Q Consensus 672 ve~Gth~eLl~~-~g~Y~-~l~~~ 693 (709)
+|.|+.+|+... ...|. .++..
T Consensus 543 v~~g~~~~i~~~p~~~~~~~l~~~ 566 (623)
T PRK10261 543 VEIGPRRAVFENPQHPYTRKLMAA 566 (623)
T ss_pred EEecCHHHHhcCCCCHHHHHHHhh
Confidence 999999999864 34564 45543
No 270
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-41 Score=342.28 Aligned_cols=195 Identities=23% Similarity=0.331 Sum_probs=169.8
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ..++++++|+
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~~ 79 (204)
T PRK13538 2 LEARNLACERDE-RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLYL 79 (204)
T ss_pred eEEEEEEEEECC-EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEEe
Confidence 789999999964 67999999999999999999999999999999999999999999999999988654 4577899999
Q ss_pred cCCCCCCc-hhHHHHHHcCCCC---CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 539 PQDTVLFN-DTIFHNIRYGRLS---ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 539 ~Q~~~LF~-gTIreNI~~g~~~---~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
+|++.++. .|++|||.++.+. .+++++.++++..++.++... ....||||||||++||||++++|
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-----------PVRQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHHHHhcCC
Confidence 99998886 6999999876432 345667778888877655432 24579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEE
Q 005205 615 PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVL 666 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl 666 (709)
++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. .+|++++
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999999999998864 47899999999999955 5677776
No 271
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-42 Score=390.46 Aligned_cols=217 Identities=21% Similarity=0.368 Sum_probs=180.4
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH-hhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~-lR~~i~ 536 (709)
-|+++|++++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.++
T Consensus 5 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 5 YISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred eEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 489999999996 467999999999999999999999999999999999999999999999999998887655 456799
Q ss_pred EEcCCCCCCch-hHHHHHHcCCC------C---CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 005205 537 VVPQDTVLFND-TIFHNIRYGRL------S---ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~~------~---~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaI 606 (709)
||+|++.+|.. |++||+.++.. . .+.++..+. +.+.++.+ |++......-.+||||||||++|
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~i 156 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVR-----AAMMLLRV--GLKVDLDEKVANLSISHKQMLEI 156 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHH-----HHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 99999998875 99999987531 0 111222111 22233322 22222233445899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhh
Q 005205 607 ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 607 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++..
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 157 AKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 999999999999999999999999999999998875 47899999999998865 99999999999999999988754
No 272
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.1e-41 Score=374.14 Aligned_cols=225 Identities=32% Similarity=0.460 Sum_probs=184.5
Q ss_pred eEEEEeEEEEecC------C----cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEe--CCC
Q 005205 458 SIQFDNVHFSYLT------E----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD--ICE 525 (709)
Q Consensus 458 ~I~f~nVsF~Y~~------~----~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~d--i~~ 525 (709)
-++++|++..|.. . ..+++||||++++||++||||+||||||||.+.|+|+.+|++|+|.++|.| +..
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 5889999999973 1 368999999999999999999999999999999999999999999999977 333
Q ss_pred CCHHHhhcceEEEcCCCCCC---chhHHHHHHcC----CCC--CC-HHHHHHHHHHHchHHHHHhCCCCccccccCCCCC
Q 005205 526 VTLESLRKSIGVVPQDTVLF---NDTIFHNIRYG----RLS--AT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (709)
Q Consensus 526 ~~~~~lR~~i~~V~Q~~~LF---~gTIreNI~~g----~~~--~s-~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~ 595 (709)
-....+|+.+-+|+|||+-. ..||+++|.-- .+. +. .+.+.+.++..++.+- .+...-..
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ryP~e 429 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRYPHE 429 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcCchh
Confidence 33556888999999999742 35999998521 111 11 1224444455544431 23445568
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEE
Q 005205 596 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVI 672 (709)
Q Consensus 596 LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Iv 672 (709)
||||||||+||||||..+|++||+||||||||+.+.+.|.+.|+++.+ |-|.|+|||+++.++. ||||+||++|+||
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999988764 5899999999999987 9999999999999
Q ss_pred EecChHHHhhc-ccHHHHHHH
Q 005205 673 EQGSHDDLLTK-AGRYAQLWG 692 (709)
Q Consensus 673 e~Gth~eLl~~-~g~Y~~l~~ 692 (709)
|.|+.++..+. ...|.+..-
T Consensus 510 E~G~~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 510 EEGPTEKVFENPQHPYTRKLL 530 (539)
T ss_pred EeCCHHHHhcCCCChHHHHHH
Confidence 99999999875 566755443
No 273
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-41 Score=330.46 Aligned_cols=221 Identities=30% Similarity=0.485 Sum_probs=189.9
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH-hhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~-lR~~i~ 536 (709)
-++++||+-.|.+ .++|++|||++++||+|+++|++|+||||+++.|+|+.+|.+|+|.++|.||...+++. .|.-|+
T Consensus 3 mL~v~~l~~~YG~-~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 3 MLEVENLSAGYGK-IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred ceeEEeEeecccc-eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 3789999999964 78999999999999999999999999999999999999999999999999999998666 566799
Q ss_pred EEcCCCCCCch-hHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 537 VVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
||||.-.+|.. ||+||+.+|.-...+++- ....+++..+-+|. +......++.+|||||+|-+||||||..+|+
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 99999999976 999999987421111111 11113344445553 5556678899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchH-HhhcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTT-AMQCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlst-i~~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
+|+|||||.+|-|.--+.|++.|+++.+ +-|+++|-++... ++-|||-+||++|+||.+|+-+||.+..
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999874 5699999999886 5569999999999999999999999764
No 274
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-42 Score=326.19 Aligned_cols=213 Identities=31% Similarity=0.497 Sum_probs=185.4
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|++.+++.+|++-.++++||||+++.||++||.||+||||||+++.|..|..|++|+|++||.|+...+ ...|++||++
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IGVl 80 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIGVL 80 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhccee
Confidence 688999999987556899999999999999999999999999999999999999999999999998754 6789999999
Q ss_pred cCCCCCCch-hHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 539 PQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 539 ~Q~~~LF~g-TIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
+-+.-|+.. |.+|||.|... +.++ .++.+..|.-++.|.+ |+ +-.+||-|+|||++|||||+
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-------~r----Rv~~~S~G~kqkV~iARAlv 149 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-------DR----RVGEFSTGMKQKVAIARALV 149 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-------HH----HHhhhchhhHHHHHHHHHHh
Confidence 988888865 99999987631 1222 3333444444444443 33 44579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhc
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
+||+|+|||||||+||-.+-+.+.+-+.+++. ||++|.-||-++.++ -||+|+++.+|++|..|+.++|.++
T Consensus 150 h~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 150 HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred cCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999999999998876 899999999999999 6999999999999999999999875
No 275
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.2e-41 Score=347.81 Aligned_cols=197 Identities=26% Similarity=0.428 Sum_probs=160.9
Q ss_pred CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEc-CCCCCC-chh
Q 005205 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP-QDTVLF-NDT 548 (709)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~-Q~~~LF-~gT 548 (709)
.+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+. ...+|++++|++ |++.+| ..|
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~t 111 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLP 111 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCc
Confidence 35799999999999999999999999999999999999999999999999987653 356788999997 667776 579
Q ss_pred HHHHHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 005205 549 IFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSAL 626 (709)
Q Consensus 549 IreNI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaL 626 (709)
++||+.+... ..+.++..+.++ .+.+.+ .+++..|+.+ ..||||||||++|||||+.+|++|||||||++|
T Consensus 112 v~e~l~~~~~~~~~~~~~~~~~~~--~~l~~~-gl~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 184 (236)
T cd03267 112 VIDSFYLLAAIYDLPPARFKKRLD--ELSELL-DLEELLDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL 184 (236)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHH--HHHHHc-CChhHhcCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 9999976431 233343332221 111111 2333344444 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEec
Q 005205 627 DSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 675 (709)
Q Consensus 627 D~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~G 675 (709)
|+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 185 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 185 DVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999998753 6899999999998755 9999999999999865
No 276
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-41 Score=383.61 Aligned_cols=212 Identities=25% Similarity=0.448 Sum_probs=176.6
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHhhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~-~~lR~~i~ 536 (709)
-|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+|++|+
T Consensus 4 ~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 4 YLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 489999999996 4679999999999999999999999999999999999999999999999999976553 45688999
Q ss_pred EEcCCCCCCch-hHHHHHHcCCC----C-CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 537 VVPQDTVLFND-TIFHNIRYGRL----S-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~~----~-~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
||+|++.+|.. |++||+.++.. . .+.++..+ .+.++++.+ |++.........||||||||++|||||
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~laral 155 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAKAL 155 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHHHH
Confidence 99999999875 99999998632 1 12222211 122334433 232223344568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecCh
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSH 677 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth 677 (709)
+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.++.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 156 ARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999998874 47899999999998765 999999999999987653
No 277
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=384.14 Aligned_cols=213 Identities=26% Similarity=0.427 Sum_probs=179.4
Q ss_pred EEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHhhcceEEEc
Q 005205 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIGVVP 539 (709)
Q Consensus 461 f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~-~~lR~~i~~V~ 539 (709)
++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+. ..+|+.++|||
T Consensus 1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 468999996 4689999999999999999999999999999999999999999999999999977654 45678899999
Q ss_pred CCCCCCc-hhHHHHHHcCCC---C--CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 540 QDTVLFN-DTIFHNIRYGRL---S--ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 540 Q~~~LF~-gTIreNI~~g~~---~--~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
|++.+|. .|++||+.++.. . .+.++..+ .+.+.++.+ |++........+||||||||++|||||+++
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~~ 152 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSYN 152 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHhC
Confidence 9998775 599999988642 1 12222222 223444443 444444556678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHh
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl 681 (709)
|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+. .||+|++|++|+|++.|+.+++.
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 99999999999999999999999998874 5789999999999876 49999999999999999988864
No 278
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.9e-41 Score=393.38 Aligned_cols=203 Identities=31% Similarity=0.472 Sum_probs=174.3
Q ss_pred CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCC--CCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCc-h
Q 005205 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH--SGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-D 547 (709)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~--~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~-g 547 (709)
++++|+|+|++++|||++||+||||||||||+++|+|+.+|+ +|+|.+||+++. ...++++|||+|++.+|. .
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~l 155 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHL 155 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcC
Confidence 356999999999999999999999999999999999999985 899999999874 245678999999999996 5
Q ss_pred hHHHHHHcCC----C-CCCHHHHHHHHHHHchHHHHH--hCCCCccccccCC-CCCCChHHHHHHHHHHHhccCCCEEEE
Q 005205 548 TIFHNIRYGR----L-SATEEEVYDAARRAAIHDTIM--NFPAKYSTVVGER-GLKLSGGEKQRVALARAFLKAPPILLC 619 (709)
Q Consensus 548 TIreNI~~g~----~-~~s~~ei~~A~~~a~l~~~I~--~Lp~G~dT~vGe~-G~~LSGGQrQRiaIARAll~~p~ILIL 619 (709)
|++|||.++. | +.+++|..+.+ ++.++ .|++..||.+|++ ...||||||||++|||||+++|+||+|
T Consensus 156 TV~E~l~~~a~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlL 230 (659)
T PLN03211 156 TVRETLVFCSLLRLPKSLTKQEKILVA-----ESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 230 (659)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHH-----HHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEE
Confidence 9999998752 2 23444433222 23333 3555669999875 678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchH--HhhcCeEEEEeCCEEEEecChHHHhh
Q 005205 620 DEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTT--AMQCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 620 DEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlst--i~~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
|||||+||+.++..+.+.|+++. +++|+|+++|+++. .+.||+|++|++|++++.|+++|+.+
T Consensus 231 DEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 231 DEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred eCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999999999999876 58999999999984 56799999999999999999999964
No 279
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.5e-41 Score=339.48 Aligned_cols=194 Identities=25% Similarity=0.361 Sum_probs=168.7
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+++|++ +.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.. .. +|++++||
T Consensus 3 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~~~ 78 (207)
T PRK13539 3 LEGEDLACVRGG-RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACHYL 78 (207)
T ss_pred EEEEeEEEEECC-eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcEEe
Confidence 799999999964 579999999999999999999999999999999999999999999999998753 22 88899999
Q ss_pred cCCCCCC-chhHHHHHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 539 PQDTVLF-NDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 539 ~Q~~~LF-~gTIreNI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
+|++.++ +.|++||+.+... ...++++.++++..++.++.. .| ...||||||||++||||++++|+
T Consensus 79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~----------~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-LP----------FGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-CC----------hhhcCHHHHHHHHHHHHHhcCCC
Confidence 9988775 6799999987532 234566788888888866432 22 24799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEecCchHHhhcCeEEEEeC
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSL-ANNRTSIFIAHRLTTAMQCDEIIVLEN 668 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l-~~~~TvIvIaHRlsti~~aD~Iivl~~ 668 (709)
+|||||||++||+.+.+.+.+.|+++ .+++|+|++||++..+.. |+++.++.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999999875 357999999999999998 99988854
No 280
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.2e-41 Score=383.50 Aligned_cols=217 Identities=26% Similarity=0.426 Sum_probs=179.6
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH-hhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~-lR~~i~ 536 (709)
-|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.++
T Consensus 4 ~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 4 LLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred eEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 489999999996 468999999999999999999999999999999999999999999999999997766544 467899
Q ss_pred EEcCCCCCCch-hHHHHHHcCCCC------CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 005205 537 VVPQDTVLFND-TIFHNIRYGRLS------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~~~------~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
||+|++.+|.. |++|||.++... .+.++..+. +.+.++.+ |+.......-.+||||||||++||||
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~a 155 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAE-----ADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAKV 155 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHH
Confidence 99999988865 999999986321 122222211 22333332 23222233445899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhh
Q 005205 610 FLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 610 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
|+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+.+++..
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 156 LSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 999999999999999999999999999998874 4689999999999876 599999999999999999887643
No 281
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=343.85 Aligned_cols=207 Identities=35% Similarity=0.557 Sum_probs=182.5
Q ss_pred cceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhh----cceEEEcCCCCCCc-hh
Q 005205 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLR----KSIGVVPQDTVLFN-DT 548 (709)
Q Consensus 474 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR----~~i~~V~Q~~~LF~-gT 548 (709)
-++|+||+|+.||+..|.|-||||||||+++|-||++|++|+|++||.|+..++.++|| +.+++|+|..-||. .|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 47899999999999999999999999999999999999999999999999999987764 47999999999995 69
Q ss_pred HHHHHHcCCC--CCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 005205 549 IFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEA 622 (709)
Q Consensus 549 IreNI~~g~~--~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEa 622 (709)
|.||..||-+ ..+ ++...++++.+|+++|=.+.|+ .||||++||+.|||||..||+||++|||
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~-----------eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN-----------ELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc-----------cccchHHHHHHHHHHHccCCCEEEecCc
Confidence 9999999952 222 3445678888999998888774 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchH-HhhcCeEEEEeCCEEEEecChHHHhhcc-cHH-HHHH
Q 005205 623 TSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTT-AMQCDEIIVLENGKVIEQGSHDDLLTKA-GRY-AQLW 691 (709)
Q Consensus 623 TSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlst-i~~aD~Iivl~~G~Ive~Gth~eLl~~~-g~Y-~~l~ 691 (709)
.|||||--....|+-|.++. -+||+++|||+|.. ++-.|||..|++|+||+.||++|.+.+. ..| ++++
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv 265 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFV 265 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHHHHHH
Confidence 99999999999999887664 36999999999975 7789999999999999999999999753 334 4444
No 282
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-41 Score=344.87 Aligned_cols=228 Identities=31% Similarity=0.492 Sum_probs=183.3
Q ss_pred EEEEeEEEEecCC---cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-C----CCCEEEECCEeCCCCCHHH
Q 005205 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-T----HSGSIRIDGQDICEVTLES 530 (709)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-p----~~G~I~idG~di~~~~~~~ 530 (709)
++++|++..|..+ .++++||||+|++||++||||+|||||||+.+.|+|+.+ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 5789999999743 379999999999999999999999999999999999998 4 6799999999999999875
Q ss_pred hh----cceEEEcCCCCC-Cc------hhHHHHHHcCCCCCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCC
Q 005205 531 LR----KSIGVVPQDTVL-FN------DTIFHNIRYGRLSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (709)
Q Consensus 531 lR----~~i~~V~Q~~~L-F~------gTIreNI~~g~~~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~ 595 (709)
+| +.||||+|||.- || .-|.|=+.......+ .++..++++.+++.+- +..+..--..
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHhhCCcc
Confidence 43 379999999852 22 233444443221101 3356666777766542 1122334468
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEE
Q 005205 596 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVI 672 (709)
Q Consensus 596 LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Iv 672 (709)
||||||||+.||=||+.+|++||-||||+|||..+.++|.+-|+++.+ +.|+|+|||++..+.. ||||+||..|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999988874 8999999999997665 9999999999999
Q ss_pred EecChHHHhhc--ccHHHHHHHhh
Q 005205 673 EQGSHDDLLTK--AGRYAQLWGQQ 694 (709)
Q Consensus 673 e~Gth~eLl~~--~g~Y~~l~~~q 694 (709)
|.|+-+|+.++ +.+.+.|++..
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll~s~ 257 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLLNSL 257 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHHHhC
Confidence 99999999975 34445565543
No 283
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2e-41 Score=387.62 Aligned_cols=218 Identities=30% Similarity=0.496 Sum_probs=179.0
Q ss_pred eEEEEeEEEEecC----------CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC
Q 005205 458 SIQFDNVHFSYLT----------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (709)
Q Consensus 458 ~I~f~nVsF~Y~~----------~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~ 527 (709)
-|+++||+++|+. ++++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|++||.++..++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 4899999999962 357999999999999999999999999999999999998 59999999999998776
Q ss_pred HHH---hhcceEEEcCCC--CCCc-hhHHHHHHcCCC----CCCHHHHHHHHHHHchHHHHHhCCCCcc-ccccCCCCCC
Q 005205 528 LES---LRKSIGVVPQDT--VLFN-DTIFHNIRYGRL----SATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKL 596 (709)
Q Consensus 528 ~~~---lR~~i~~V~Q~~--~LF~-gTIreNI~~g~~----~~s~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~L 596 (709)
... +|+.++||+|++ .+|. .|++||+.++.. ..+..+..+ .+.+.++.+ |++ ........+|
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~L 426 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQ-----QVIAVMEEV--GLDPETRHRYPAEF 426 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHH-----HHHHHHHHc--CCCHHHHhcCCccC
Confidence 543 578899999998 3665 599999987521 112111111 122333332 232 1233445689
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEE
Q 005205 597 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIE 673 (709)
Q Consensus 597 SGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive 673 (709)
|||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|+|++
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 7899999999998865 99999999999999
Q ss_pred ecChHHHhhc
Q 005205 674 QGSHDDLLTK 683 (709)
Q Consensus 674 ~Gth~eLl~~ 683 (709)
.|+.+|+++.
T Consensus 507 ~~~~~~~~~~ 516 (529)
T PRK15134 507 QGDCERVFAA 516 (529)
T ss_pred EcCHHHHhcC
Confidence 9999999864
No 284
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3.3e-41 Score=337.35 Aligned_cols=193 Identities=24% Similarity=0.352 Sum_probs=165.1
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++|++++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ..++++++|+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (198)
T TIGR01189 1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYL 78 (198)
T ss_pred CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEe
Confidence 57899999996 467999999999999999999999999999999999999999999999999998775 4678899999
Q ss_pred cCCCCCCc-hhHHHHHHcCCCCC--CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 539 PQDTVLFN-DTIFHNIRYGRLSA--TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 539 ~Q~~~LF~-gTIreNI~~g~~~~--s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
+|++.+|. .|++||+.++.+.. .++++.++++..++.++... . ...||||||||++||||++++|+
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 79 GHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-------P----AAQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred ccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC-------C----hhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999886 69999998753211 23457777887787765432 2 35799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEecCchHHhhcCeEEE
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSL-ANNRTSIFIAHRLTTAMQCDEIIV 665 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l-~~~~TvIvIaHRlsti~~aD~Iiv 665 (709)
+|||||||++||+.+.+.+.+.|+++ .+++|+|+|||+...+. +|+.+.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 99999999999999999999999886 45789999999985543 355544
No 285
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-41 Score=390.44 Aligned_cols=218 Identities=29% Similarity=0.452 Sum_probs=178.2
Q ss_pred eEEEEeEEEEecC---CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC----------
Q 005205 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---------- 524 (709)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~---------- 524 (709)
-|+++||+++|+. +.++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 5999999999963 247999999999999999999999999999999999999999999999998552
Q ss_pred CCCHH---Hhh-cceEEEcCCC--CCCc-hhHHHHHHcCC---CCCCHHH----HHHHHHHHchHHHHHhCCCCcccccc
Q 005205 525 EVTLE---SLR-KSIGVVPQDT--VLFN-DTIFHNIRYGR---LSATEEE----VYDAARRAAIHDTIMNFPAKYSTVVG 590 (709)
Q Consensus 525 ~~~~~---~lR-~~i~~V~Q~~--~LF~-gTIreNI~~g~---~~~s~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vG 590 (709)
+.+.. .+| +.||||+|+| .++. -||+|||.++. ...+.++ +.++++..++ |+ .+....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL-------~~-~~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRI-------PE-AQTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCC-------CC-hhhHHh
Confidence 22322 344 5799999998 5776 59999998752 1123322 3333333332 21 012344
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchHHhh-cCeEEEEe
Q 005205 591 ERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-N-NRTSIFIAHRLTTAMQ-CDEIIVLE 667 (709)
Q Consensus 591 e~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~-~~TvIvIaHRlsti~~-aD~Iivl~ 667 (709)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. + ++|+|+|||++..+.. ||+|+||+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 5567899999999999999999999999999999999999999999999885 3 7999999999998754 99999999
Q ss_pred CCEEEEecChHHHhhc
Q 005205 668 NGKVIEQGSHDDLLTK 683 (709)
Q Consensus 668 ~G~Ive~Gth~eLl~~ 683 (709)
+|+|++.|+++++...
T Consensus 244 ~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 244 QGEAVETGSVEQIFHA 259 (623)
T ss_pred CCeecccCCHHHhhcC
Confidence 9999999999999753
No 286
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9e-41 Score=338.25 Aligned_cols=196 Identities=23% Similarity=0.318 Sum_probs=164.9
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++|++++|+ ++++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+. ..++.++|
T Consensus 11 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~~ 86 (214)
T PRK13543 11 LLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMAY 86 (214)
T ss_pred eEEEeeEEEecC-CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceEE
Confidence 599999999996 45799999999999999999999999999999999999999999999999998753 34668999
Q ss_pred EcCCCCCCch-hHHHHHHcCCC--CCC-HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 538 VPQDTVLFND-TIFHNIRYGRL--SAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~--~~s-~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
++|++.+|.+ |++||+.++.. ... ++.+.++++..++ ++.+++. ...||||||||++||||++++
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~----~~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGL-------AGYEDTL----VRQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCC-------hhhccCC----hhhCCHHHHHHHHHHHHHhcC
Confidence 9999999986 99999977531 112 2333344443333 3333443 367999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeC
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLEN 668 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~ 668 (709)
|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+. .||+|++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999999998754 5799999999999885 5899999874
No 287
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=6.3e-41 Score=380.39 Aligned_cols=212 Identities=25% Similarity=0.306 Sum_probs=182.7
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+|+|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 3 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLS-DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcC-CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 389999999996 4569999999999999999999999999999999999999999999999998887777778888999
Q ss_pred EcCCCCC---------CchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 538 VPQDTVL---------FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 538 V~Q~~~L---------F~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
|+|++.+ +..|++||+.++. ..++++.++++..++.+.. ......||||||||++|||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLAQQFGITALL-----------DRRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHHHHcCCHhhh-----------hCCcccCCHHHHHHHHHHH
Confidence 9998753 2469999987642 1234555666665554432 2334689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||+.+|++||||||||+||+++.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.|+.+++++.
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 9999999999999999999999999999998875 46899999999998865 999999999999999999988754
No 288
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=6.3e-41 Score=341.83 Aligned_cols=198 Identities=27% Similarity=0.409 Sum_probs=161.5
Q ss_pred EEEEeEEEEecC------CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEEC--C--EeCCCCCH
Q 005205 459 IQFDNVHFSYLT------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID--G--QDICEVTL 528 (709)
Q Consensus 459 I~f~nVsF~Y~~------~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~id--G--~di~~~~~ 528 (709)
|+++||+++|+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+| | .++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999963 1479999999999999999999999999999999999999999999998 4 26766665
Q ss_pred HH---h-hcceEEEcCCCCCCch-hHHHHHHcCC--CCCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCC
Q 005205 529 ES---L-RKSIGVVPQDTVLFND-TIFHNIRYGR--LSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLS 597 (709)
Q Consensus 529 ~~---l-R~~i~~V~Q~~~LF~g-TIreNI~~g~--~~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LS 597 (709)
.. + ++.++||+|++.+|.. |++|||.+.. ...+. +++.++++..++.+ .+ .......||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~---~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPE-------RL---WHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------hh---hhCCcccCC
Confidence 54 3 4679999999988864 9999997631 11222 23333333333322 11 123467899
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEE
Q 005205 598 GGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVL 666 (709)
Q Consensus 598 GGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl 666 (709)
||||||++|||||+++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||++..+. .||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999999875 4789999999999886 69999876
No 289
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.1e-41 Score=392.96 Aligned_cols=216 Identities=30% Similarity=0.457 Sum_probs=184.1
Q ss_pred eEEEEeEEEEec--------CCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCC---CCEEEECCEeCCCC
Q 005205 458 SIQFDNVHFSYL--------TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEV 526 (709)
Q Consensus 458 ~I~f~nVsF~Y~--------~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~---~G~I~idG~di~~~ 526 (709)
+++|.++. +++ .++++|+|+|++|+|||.+||+||||||||||+++|+|..+|. +|+|.+||.++.
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 56777776 553 1467999999999999999999999999999999999999885 899999999875
Q ss_pred CHHHhhcceEEEcCCCCCCc-hhHHHHHHcCCC-----CCCHHHHHHHHHHHchHHHHHh--CCCCccccccCC--CCCC
Q 005205 527 TLESLRKSIGVVPQDTVLFN-DTIFHNIRYGRL-----SATEEEVYDAARRAAIHDTIMN--FPAKYSTVVGER--GLKL 596 (709)
Q Consensus 527 ~~~~lR~~i~~V~Q~~~LF~-gTIreNI~~g~~-----~~s~~ei~~A~~~a~l~~~I~~--Lp~G~dT~vGe~--G~~L 596 (709)
...+|+.+|||+|++.+|. .||+|||.|+.. +.+.++ +...+++.++. |++..||.||+. +..|
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~L 167 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKE-----KRERVDEVLQALGLRKCANTRIGVPGRVKGL 167 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHHcCchhcCcCccCCCCCCCCc
Confidence 4678999999999999995 599999988632 123332 22234455554 556789999985 4899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCch--HHhhcCeEEEEeCCEEEE
Q 005205 597 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLT--TAMQCDEIIVLENGKVIE 673 (709)
Q Consensus 597 SGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRls--ti~~aD~Iivl~~G~Ive 673 (709)
|||||||++|||||+.+|+||+||||||+||+.+...+.+.|+++. +++|+|+++|+++ ..+.+|+|++|++|++++
T Consensus 168 SgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~ 247 (617)
T TIGR00955 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY 247 (617)
T ss_pred CcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE
Confidence 9999999999999999999999999999999999999999999876 4799999999996 367899999999999999
Q ss_pred ecChHHHhh
Q 005205 674 QGSHDDLLT 682 (709)
Q Consensus 674 ~Gth~eLl~ 682 (709)
.|+++|+.+
T Consensus 248 ~G~~~~~~~ 256 (617)
T TIGR00955 248 LGSPDQAVP 256 (617)
T ss_pred ECCHHHHHH
Confidence 999999854
No 290
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=388.26 Aligned_cols=217 Identities=29% Similarity=0.480 Sum_probs=188.4
Q ss_pred eEEEEeEEEEecC---CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHh---
Q 005205 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL--- 531 (709)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~l--- 531 (709)
-|+++||+++|++ .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||+++.+.+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 4899999999974 2479999999999999999999999999999999999999999999999999999987764
Q ss_pred -hcceEEEcCCCCCCc-hhHHHHHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 005205 532 -RKSIGVVPQDTVLFN-DTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (709)
Q Consensus 532 -R~~i~~V~Q~~~LF~-gTIreNI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIA 607 (709)
|+.++||+|++.+|. .|+.||+.++.. ..+.++ ....+++.++.+ |++..+.....+|||||+||++||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ-----RLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHC--CChhhhcCCcccCCHHHHHHHHHH
Confidence 678999999999996 599999987421 111111 122334555554 556656666679999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHh
Q 005205 608 RAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 608 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl 681 (709)
|||+++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||++..++.||++++|++|+++++|+.+|..
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999999875 579999999999999999999999999999999999886
No 291
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=6.7e-41 Score=341.31 Aligned_cols=195 Identities=30% Similarity=0.514 Sum_probs=165.3
Q ss_pred eEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCC---CchhHHHHHHcC
Q 005205 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL---FNDTIFHNIRYG 556 (709)
Q Consensus 480 l~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~L---F~gTIreNI~~g 556 (709)
|+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..|++++||||++.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998864 357789999999976 568999999875
Q ss_pred C---------CC-CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 005205 557 R---------LS-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSAL 626 (709)
Q Consensus 557 ~---------~~-~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaL 626 (709)
. +. ..++++.++++..++.++... ....||||||||++|||||+++|++|||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-----------PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 2 11 123456677777776554322 33469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhcccHHHHHHH
Q 005205 627 DSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWG 692 (709)
Q Consensus 627 D~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~ 692 (709)
|+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|+++ +|++++.|+++++.+. ..+.+++.
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~-~~~~~~~~ 210 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP-APWMTTFG 210 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh-HHHHHHhC
Confidence 9999999999999875 4789999999999876 59999999 7999999999999775 35666653
No 292
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.8e-41 Score=382.42 Aligned_cols=218 Identities=30% Similarity=0.500 Sum_probs=179.1
Q ss_pred eEEEEeEEEEecC---CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCCCCHH
Q 005205 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEVTLE 529 (709)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-----~~G~I~idG~di~~~~~~ 529 (709)
-|+++||+++|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 4899999999963 25799999999999999999999999999999999999987 799999999999887754
Q ss_pred H---hh-cceEEEcCCCC--CCc-hhHHHHHHcCC---CCCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCC
Q 005205 530 S---LR-KSIGVVPQDTV--LFN-DTIFHNIRYGR---LSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (709)
Q Consensus 530 ~---lR-~~i~~V~Q~~~--LF~-gTIreNI~~g~---~~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~ 595 (709)
. +| +.|+||+|++. ++. .|++||+.++. ...+. +++.++++..++.+.. ........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 3 34 58999999985 443 58999986421 11222 2334444444442210 112334568
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeCCEEE
Q 005205 596 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI 672 (709)
Q Consensus 596 LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~G~Iv 672 (709)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. .++|+|+|||++..+.. ||+|++|++|+|+
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998875 37999999999998764 9999999999999
Q ss_pred EecChHHHhhc
Q 005205 673 EQGSHDDLLTK 683 (709)
Q Consensus 673 e~Gth~eLl~~ 683 (709)
+.|+.++++..
T Consensus 237 ~~g~~~~~~~~ 247 (529)
T PRK15134 237 EQNRAATLFSA 247 (529)
T ss_pred EeCCHHHHhhC
Confidence 99999998753
No 293
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=4.9e-41 Score=333.88 Aligned_cols=178 Identities=31% Similarity=0.482 Sum_probs=149.8
Q ss_pred ecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC--CCCHHHhhcceEEEcCCC--C
Q 005205 468 YLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSIGVVPQDT--V 543 (709)
Q Consensus 468 Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~--~~~~~~lR~~i~~V~Q~~--~ 543 (709)
|++++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. +.+...+|+.++||+|++ .
T Consensus 1 ~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 1 YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred CCCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 334567999999999999999999999999999999999999999999999999985 223456788999999998 5
Q ss_pred CCchhHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 005205 544 LFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (709)
Q Consensus 544 LF~gTIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~IL 617 (709)
+|..|++|||.++.. ..++ +++.++++..++.++... ....||||||||++|||||+++|++|
T Consensus 81 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~ll 149 (190)
T TIGR01166 81 LFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRER-----------PTHCLSGGEKKRVAIAGAVAMRPDVL 149 (190)
T ss_pred cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 788999999987521 2232 344555665566554433 33589999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchH
Q 005205 618 LCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTT 656 (709)
Q Consensus 618 ILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlst 656 (709)
||||||++||+.+.+.+.+.|+++. +++|+|+|||++..
T Consensus 150 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 150 LLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9999999999999999999998875 47899999999864
No 294
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-40 Score=342.91 Aligned_cols=219 Identities=32% Similarity=0.551 Sum_probs=184.4
Q ss_pred eEEEEeEEEEecCC----------cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC
Q 005205 458 SIQFDNVHFSYLTE----------RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~----------~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~ 527 (709)
-++.+||...||-. -.+.+++||+.++||+++|||+||||||||-..|+||.+++ |+|.++|.||..++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 58999999999721 24789999999999999999999999999999999999876 99999999999998
Q ss_pred HHH---hhcceEEEcCCCCC-Cc--hhHHHHHH----cCCCCCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCC
Q 005205 528 LES---LRKSIGVVPQDTVL-FN--DTIFHNIR----YGRLSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593 (709)
Q Consensus 528 ~~~---lR~~i~~V~Q~~~L-F~--gTIreNI~----~g~~~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G 593 (709)
.+. +|+.+-+|+|||+= +| .||.+=|. ...|..++ +.+.+|++.+|++.-..+ .--
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~----------RYP 424 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRN----------RYP 424 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhh----------cCC
Confidence 766 78999999999972 22 35555554 44566654 456667777776654332 234
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeCCE
Q 005205 594 LKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGK 670 (709)
Q Consensus 594 ~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~G~ 670 (709)
..+|||||||||||||++-+|++++|||||||||-.-.++|.+-|+++. .+-+-++|+|+|+.++. ||+|+||.+||
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~Gk 504 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCE
Confidence 6899999999999999999999999999999999999999999998774 46799999999999997 99999999999
Q ss_pred EEEecChHHHhhc-ccHH
Q 005205 671 VIEQGSHDDLLTK-AGRY 687 (709)
Q Consensus 671 Ive~Gth~eLl~~-~g~Y 687 (709)
|||+|+-+++.++ .-.|
T Consensus 505 iVE~G~~~~if~~P~~~Y 522 (534)
T COG4172 505 IVEQGPTEAVFANPQHEY 522 (534)
T ss_pred EeeeCCHHHHhcCCCcHH
Confidence 9999999999975 3445
No 295
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.9e-41 Score=312.23 Aligned_cols=202 Identities=31% Similarity=0.497 Sum_probs=173.0
Q ss_pred EEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEc
Q 005205 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (709)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 539 (709)
++++|.+.- .+.++|+++||++.+||.+||.||||||||||+|.++-|..|++|++++.|.|++.++++.+|++|+||.
T Consensus 5 e~kq~~y~a-~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~ 83 (223)
T COG4619 5 ELKQVGYLA-GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCA 83 (223)
T ss_pred HHHHHHhhc-CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHH
Confidence 344444322 4679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHcC----CCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 540 QDTVLFNDTIFHNIRYG----RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 540 Q~~~LF~gTIreNI~~g----~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
|.|-||.+||.||+-|- +...+.+.-.+-++.+++. ++.+..+-.+||||||||+||+|-|---|+
T Consensus 84 Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~----------~~~L~k~it~lSGGE~QriAliR~Lq~~P~ 153 (223)
T COG4619 84 QTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP----------DSILTKNITELSGGEKQRIALIRNLQFMPK 153 (223)
T ss_pred cCccccccchhhccccchHHhccCCChHHHHHHHHHcCCc----------hhhhcchhhhccchHHHHHHHHHHhhcCCc
Confidence 99999999999999774 1122333333344444433 445556778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchH-HhhcCeEEEEeCCEEE
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTT-AMQCDEIIVLENGKVI 672 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlst-i~~aD~Iivl~~G~Iv 672 (709)
||+|||+|||||+.+.+.|.+.|.++. ++..++-|||.-.. +++||+++-+..|++-
T Consensus 154 ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 154 ILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred eEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 999999999999999999999987775 56899999999887 9999999999999864
No 296
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-40 Score=332.45 Aligned_cols=189 Identities=19% Similarity=0.297 Sum_probs=162.1
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+++|++ +.++ ++||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ++.++|+
T Consensus 2 l~~~~l~~~~~~-~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~~ 75 (195)
T PRK13541 2 LSLHQLQFNIEQ-KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTYI 75 (195)
T ss_pred eEEEEeeEEECC-cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEec
Confidence 789999999964 4455 599999999999999999999999999999999999999999999987643 3569999
Q ss_pred cCCCC-CCchhHHHHHHcCCCCC-CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 005205 539 PQDTV-LFNDTIFHNIRYGRLSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (709)
Q Consensus 539 ~Q~~~-LF~gTIreNI~~g~~~~-s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~I 616 (709)
+|++. +|+.|++|||.++.+.. .++++.++++..++.++.. ..+.+||||||||++||||++++|++
T Consensus 76 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p~~ 144 (195)
T PRK13541 76 GHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQSDL 144 (195)
T ss_pred cCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99875 47889999998864322 3456667777777665433 34678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEecCchHHhhcCeEE
Q 005205 617 LLCDEATSALDSTTEAEILNALKSL-ANNRTSIFIAHRLTTAMQCDEII 664 (709)
Q Consensus 617 LILDEaTSaLD~~tE~~I~~~L~~l-~~~~TvIvIaHRlsti~~aD~Ii 664 (709)
|||||||++||+.+.+.+.+.|+.. .+++|+|+|||+++.++.||-|.
T Consensus 145 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 145 WLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 9999999999999999999999753 46799999999999999999763
No 297
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.8e-41 Score=337.18 Aligned_cols=195 Identities=33% Similarity=0.568 Sum_probs=169.5
Q ss_pred eEEEEeEEEEecCC--------cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH
Q 005205 458 SIQFDNVHFSYLTE--------RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE 529 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~--------~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~ 529 (709)
-++.+|++..|+-. ..+++||||+|++||+++|||+|||||||+.++|+||++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 37899999999732 26899999999999999999999999999999999999999999999999988777
Q ss_pred HhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHH-HHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHD-TIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 530 ~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~-~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
.+...+++.+.++.+++.+ +..+.| ..|||||||||+|||
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IAR 122 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIAR 122 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHH
Confidence 1223566888888888765 445544 579999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc-c
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK-A 684 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~-~ 684 (709)
||.-+|+++|+||||||||.-.+++|.+-|.++. .+-|.+.|||+++.++. ||||.||..|+|||.|+-+|+.+. .
T Consensus 123 ALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~ 202 (268)
T COG4608 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPL 202 (268)
T ss_pred HHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCC
Confidence 9999999999999999999999999999987765 47899999999999998 999999999999999999999974 3
Q ss_pred cHH-HHHHHh
Q 005205 685 GRY-AQLWGQ 693 (709)
Q Consensus 685 g~Y-~~l~~~ 693 (709)
-.| +.|+..
T Consensus 203 HpYTk~Ll~a 212 (268)
T COG4608 203 HPYTKALLSA 212 (268)
T ss_pred CHHHHHHHHh
Confidence 445 455544
No 298
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.2e-40 Score=376.82 Aligned_cols=215 Identities=22% Similarity=0.407 Sum_probs=177.5
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC--CCCEEEECCEeCCCCCHHH-hhcce
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQDICEVTLES-LRKSI 535 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p--~~G~I~idG~di~~~~~~~-lR~~i 535 (709)
|+++||+++|+ ++++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+.|
T Consensus 2 l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 78999999996 46799999999999999999999999999999999999987 7999999999998877654 46789
Q ss_pred EEEcCCCCCCch-hHHHHHHcCCCC------CCHHHHHHHHHHHchHHHHHhCCCCccccc-cCCCCCCChHHHHHHHHH
Q 005205 536 GVVPQDTVLFND-TIFHNIRYGRLS------ATEEEVYDAARRAAIHDTIMNFPAKYSTVV-GERGLKLSGGEKQRVALA 607 (709)
Q Consensus 536 ~~V~Q~~~LF~g-TIreNI~~g~~~------~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~v-Ge~G~~LSGGQrQRiaIA 607 (709)
+||||++.+|.. |++||+.++... .+.++..+ .+++.++.+ |++... ......||||||||++||
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~iA 153 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEIA 153 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHHH
Confidence 999999988875 999999886421 12222221 123334443 222111 122457999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHh
Q 005205 608 RAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 608 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl 681 (709)
|||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.|+.+++.
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 99999999999999999999999999999998874 47899999999998865 9999999999999999876653
No 299
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.9e-40 Score=364.39 Aligned_cols=227 Identities=31% Similarity=0.497 Sum_probs=185.7
Q ss_pred eEEEEeEEEEecCC---cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCC----CCEEEECCEeCCCCCHHH
Q 005205 458 SIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH----SGSIRIDGQDICEVTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~----~G~I~idG~di~~~~~~~ 530 (709)
-++++|++..|... .++++||||+|.+||++||||+|||||||+++.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 48999999998632 26999999999999999999999999999999999999988 899999999999999866
Q ss_pred hh----cceEEEcCCCC-CCch--hHHHHH----HcCCCC---CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCC
Q 005205 531 LR----KSIGVVPQDTV-LFND--TIFHNI----RYGRLS---ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKL 596 (709)
Q Consensus 531 lR----~~i~~V~Q~~~-LF~g--TIreNI----~~g~~~---~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~L 596 (709)
+| +.|+||||+|+ .||- ||.+-| ....+. .-.++..+.++.+++.+-... ..--..|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 53 46999999986 4553 555544 333211 123444555555555443322 3345789
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeCCEEEE
Q 005205 597 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIE 673 (709)
Q Consensus 597 SGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive 673 (709)
|||||||+.||+||..||++||+||||.|||+.+.++|.+.|+++. .|.++|+|||.+..+.. ||||+||++|+|||
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999886 67899999999998876 99999999999999
Q ss_pred ecChHHHhhcc-cHH-HHHHHh
Q 005205 674 QGSHDDLLTKA-GRY-AQLWGQ 693 (709)
Q Consensus 674 ~Gth~eLl~~~-g~Y-~~l~~~ 693 (709)
.|+-++++++. -.| +.|+..
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~a 257 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLAA 257 (539)
T ss_pred ecCHHHHHhccCCcccHHHHhh
Confidence 99999999863 335 444443
No 300
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.4e-40 Score=380.10 Aligned_cols=219 Identities=25% Similarity=0.471 Sum_probs=176.0
Q ss_pred eEEEEeEEEEecC----CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEEC-CEe---CCCCC--
Q 005205 458 SIQFDNVHFSYLT----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID-GQD---ICEVT-- 527 (709)
Q Consensus 458 ~I~f~nVsF~Y~~----~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~id-G~d---i~~~~-- 527 (709)
-|+++||+++|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999952 2579999999999999999999999999999999999999999999996 643 33333
Q ss_pred -HHHhhcceEEEcCCCCCCc-hhHHHHHHcCCC-CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHH
Q 005205 528 -LESLRKSIGVVPQDTVLFN-DTIFHNIRYGRL-SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (709)
Q Consensus 528 -~~~lR~~i~~V~Q~~~LF~-gTIreNI~~g~~-~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 600 (709)
...+|++|+||||++.+|. .|++||+.++.. .... +++.++++..++.+. ..+.........|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHH
Confidence 2346778999999998887 499999976311 1111 223333333332110 00012334456899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecCh
Q 005205 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSH 677 (709)
Q Consensus 601 rQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth 677 (709)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|++++.|++
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988753 7899999999998865 999999999999999999
Q ss_pred HHHhh
Q 005205 678 DDLLT 682 (709)
Q Consensus 678 ~eLl~ 682 (709)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 88765
No 301
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-40 Score=341.67 Aligned_cols=198 Identities=25% Similarity=0.376 Sum_probs=165.3
Q ss_pred cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCc-hhHH
Q 005205 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-DTIF 550 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~-gTIr 550 (709)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||. +++++|++.+++ .|++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEecccCCCCCCcHH
Confidence 46999999999999999999999999999999999999999999999994 567888887764 5999
Q ss_pred HHHHcCC--CCCCHHHHHHH----HHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 005205 551 HNIRYGR--LSATEEEVYDA----ARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATS 624 (709)
Q Consensus 551 eNI~~g~--~~~s~~ei~~A----~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTS 624 (709)
||+.++. ...+.++..+. ++..++. ..+......||||||||++||||++.+|+||||||||+
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~ 172 (264)
T PRK13546 104 ENIEFKMLCMGFKRKEIKAMTPKIIEFSELG-----------EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALS 172 (264)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccc
Confidence 9998642 22344444332 3333333 33344567899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhcccHHHHHHHh
Q 005205 625 ALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQ 693 (709)
Q Consensus 625 aLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~ 693 (709)
+||+.+.+.+.+.|.++. .++|+|+|||++..+.. ||+|++|++|+|++.|++++++++.+.|.+.+..
T Consensus 173 gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 243 (264)
T PRK13546 173 VGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKK 243 (264)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHhHHHHHHHHh
Confidence 999999999999998764 47999999999998865 9999999999999999999999875555555443
No 302
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-40 Score=360.86 Aligned_cols=211 Identities=26% Similarity=0.381 Sum_probs=174.3
Q ss_pred eEEEEeEEEEecCC--cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 458 SIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~--~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
.++++|++|+|++. +++|+|+||+|++|+++||+||+|||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999753 4799999999999999999999999999999999999999999999999752
Q ss_pred EEEcCCCCCCc-hhHHHHHHcCC--CCCCHHHH----HHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 536 GVVPQDTVLFN-DTIFHNIRYGR--LSATEEEV----YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 536 ~~V~Q~~~LF~-gTIreNI~~g~--~~~s~~ei----~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
++.+.+.++. .|++|||.++. +..++++. .++++..++.+++. .....||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-----------~~~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-----------QPVKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CCcccCCHHHHHHHHHHH
Confidence 1223333433 59999998742 22334433 34455555554433 345689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhcccH
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTKAGR 686 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~~g~ 686 (709)
||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++|+...-..
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~ 236 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDE 236 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHH
Confidence 9999999999999999999999999999998874 47899999999998865 999999999999999999999887556
Q ss_pred HHHHHH
Q 005205 687 YAQLWG 692 (709)
Q Consensus 687 Y~~l~~ 692 (709)
|.+.|.
T Consensus 237 ~~~~~~ 242 (549)
T PRK13545 237 FLKKYN 242 (549)
T ss_pred HHHHHh
Confidence 655554
No 303
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2.2e-40 Score=337.71 Aligned_cols=194 Identities=27% Similarity=0.329 Sum_probs=156.1
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
+.++|++.+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++... ....
T Consensus 23 l~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~--- 93 (224)
T cd03220 23 LGILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGG--- 93 (224)
T ss_pred hhhhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----cccc---
Confidence 66778888885 46799999999999999999999999999999999999999999999999886421 1111
Q ss_pred cCCCCCCchhHHHHHHcCCC--CCCHHHH----HHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 005205 539 PQDTVLFNDTIFHNIRYGRL--SATEEEV----YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (709)
Q Consensus 539 ~Q~~~LF~gTIreNI~~g~~--~~s~~ei----~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~ 612 (709)
.+..+.|++||+.++.. ..+.++. .++++..+ +++..++.+ ..||||||||++||||+++
T Consensus 94 ---~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~~----~~LSgG~~qrv~laral~~ 159 (224)
T cd03220 94 ---GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSE-------LGDFIDLPV----KTYSSGMKARLAFAIATAL 159 (224)
T ss_pred ---cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------ChhhhhCCh----hhCCHHHHHHHHHHHHHhc
Confidence 12245799999987632 1233332 22222222 333344444 5799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEec
Q 005205 613 APPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQG 675 (709)
Q Consensus 613 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~G 675 (709)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+. .||+|++|++|++++.|
T Consensus 160 ~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999998874 4689999999999876 59999999999999875
No 304
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.4e-40 Score=378.21 Aligned_cols=213 Identities=29% Similarity=0.452 Sum_probs=174.3
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCC--CCCCCEEEEC-----------------
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF--DTHSGSIRID----------------- 519 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly--~p~~G~I~id----------------- 519 (709)
|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 57899999995 468999999999999999999999999999999999996 7999999997
Q ss_pred ------CEeCC-------CCC---HHHhhcceEEEcCC-CCCCc-hhHHHHHHcCCC--CCCHH----HHHHHHHHHchH
Q 005205 520 ------GQDIC-------EVT---LESLRKSIGVVPQD-TVLFN-DTIFHNIRYGRL--SATEE----EVYDAARRAAIH 575 (709)
Q Consensus 520 ------G~di~-------~~~---~~~lR~~i~~V~Q~-~~LF~-gTIreNI~~g~~--~~s~~----ei~~A~~~a~l~ 575 (709)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.++.. ..+.+ ++.++++..++.
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 33331 111 23467889999998 57776 599999987421 12222 233344444443
Q ss_pred HHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecC
Q 005205 576 DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHR 653 (709)
Q Consensus 576 ~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHR 653 (709)
+ .....-.+||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++. .++|+|+|||+
T Consensus 160 ~-----------~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd 228 (520)
T TIGR03269 160 H-----------RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228 (520)
T ss_pred h-----------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 3 3334457899999999999999999999999999999999999999999998874 37899999999
Q ss_pred chHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 654 LTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 654 lsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
+..+.. ||+|++|++|+|++.|+++++.+.
T Consensus 229 ~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 229 PEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred HHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 999864 999999999999999999988653
No 305
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-40 Score=373.81 Aligned_cols=217 Identities=25% Similarity=0.395 Sum_probs=178.9
Q ss_pred eEEEEeEEEEec--CCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-CCCCEEEECCEeCCCCCH-HHhhc
Q 005205 458 SIQFDNVHFSYL--TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-THSGSIRIDGQDICEVTL-ESLRK 533 (709)
Q Consensus 458 ~I~f~nVsF~Y~--~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-p~~G~I~idG~di~~~~~-~~lR~ 533 (709)
-|+++||+++|+ ++.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 499999999995 24579999999999999999999999999999999999999 599999999999876543 45677
Q ss_pred ceEEEcCCC---CCC-chhHHHHHHcCCC-C------CCHHHHHHHHHHHchHHHHHhCCCCccc-cccCCCCCCChHHH
Q 005205 534 SIGVVPQDT---VLF-NDTIFHNIRYGRL-S------ATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGEK 601 (709)
Q Consensus 534 ~i~~V~Q~~---~LF-~gTIreNI~~g~~-~------~s~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQr 601 (709)
.++||+|++ .+| +.|+.||+.++.. . .+.++ ....+++.++.+ |++. ........||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 355 4699999987521 0 11111 112244555554 3332 23445578999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHH
Q 005205 602 QRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDD 679 (709)
Q Consensus 602 QRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~e 679 (709)
||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|+|+..|+.+|
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998774 57999999999998765 99999999999999998877
Q ss_pred Hh
Q 005205 680 LL 681 (709)
Q Consensus 680 Ll 681 (709)
+.
T Consensus 492 ~~ 493 (506)
T PRK13549 492 LT 493 (506)
T ss_pred CC
Confidence 64
No 306
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.9e-36 Score=327.05 Aligned_cols=344 Identities=20% Similarity=0.254 Sum_probs=250.4
Q ss_pred HHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Q 005205 312 NKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAM------VLC 385 (709)
Q Consensus 312 ~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~g 385 (709)
++..++......+...|.+.|--|+.+..|....+...+...+...+...+.-++..+.+++-.+..++.. ++.
T Consensus 258 eklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs 337 (659)
T KOG0060|consen 258 EKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFS 337 (659)
T ss_pred HHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeec
Confidence 34445555566677778999999999988877666655555554444333222333333322111111000 111
Q ss_pred HHHHhcCCcCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-------------cC---
Q 005205 386 SHGILSGEMTVGDLVMVNG----LLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADI-------------QD--- 445 (709)
Q Consensus 386 ~~~v~~g~ltvG~l~a~~~----~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~~~-------------~~--- 445 (709)
++ ..+.+|..++...+. ++..+...+..+......+.+-.+-..|+.++++.-.+. ..
T Consensus 338 ~h--~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~ 415 (659)
T KOG0060|consen 338 GH--VYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAE 415 (659)
T ss_pred cc--ccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhh
Confidence 11 345677777765543 233445555566666666666677778887775421100 00
Q ss_pred -----CCCCCCCCCCCceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEEC
Q 005205 446 -----RDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (709)
Q Consensus 446 -----~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~id 519 (709)
.++.....+.+..|+|++|+++=|+ +.-+.+|+||+|+.|+.+-|.||||||||+|++.|.|+|+..+|.+.--
T Consensus 416 ~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~ 495 (659)
T KOG0060|consen 416 WGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKP 495 (659)
T ss_pred hccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEec
Confidence 0011111223357999999999886 4455678999999999999999999999999999999999999999753
Q ss_pred CEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCC-------CCCCHHHHHHHHHHHchHHHHHhCCCCcccccc-C
Q 005205 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR-------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG-E 591 (709)
Q Consensus 520 G~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~-------~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vG-e 591 (709)
...-. +.+=||||.|+.=.||+||-+.|-. ..++|++|.+-++.+++.+.++ ..+|+|+++- |
T Consensus 496 ~~~~~--------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~-r~ggld~~~~~d 566 (659)
T KOG0060|consen 496 TDGGP--------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLE-REGGLDQQVDWD 566 (659)
T ss_pred ccCCC--------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHH-HhCCCCchhhcc
Confidence 21100 4588999999999999999998851 2478999999999999988554 5789998775 4
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeC
Q 005205 592 RGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLEN 668 (709)
Q Consensus 592 ~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~ 668 (709)
=..-||+||+||+|.||-++.+|++-||||+|||+|.+.|..+.+.+++ .|-|.|.|.||-|.-+.-|.++-|+.
T Consensus 567 W~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~--~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 567 WMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE--MGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH--cCCeEEEeccHHHHHhhhhEEEEecC
Confidence 5678999999999999999999999999999999999999999999988 58999999999999999999999986
No 307
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.1e-40 Score=323.32 Aligned_cols=220 Identities=25% Similarity=0.448 Sum_probs=186.9
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHh-hcceEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGV 537 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~l-R~~i~~ 537 (709)
++.+|++.+|. +-.+++||||++++||++||+||+||||||++|+|.|+|+|++|+|.++|.||..+++... |.-|+-
T Consensus 5 L~v~~l~k~FG-Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 5 LEVRGLSKRFG-GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred eeeccceeecC-CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcccee
Confidence 57899999995 4679999999999999999999999999999999999999999999999999999997775 455999
Q ss_pred EcCCCCCCch-hHHHHHHcCCCC-----------CCHHHHHHHHHHH-chHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 538 VPQDTVLFND-TIFHNIRYGRLS-----------ATEEEVYDAARRA-AIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~~-----------~s~~ei~~A~~~a-~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
-+|.+-+|++ |+.||+..+.-. ....+-.++.+.| .+-|++ |++-.-.+...+||+||+.|+
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~v-----gL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV-----GLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHc-----CCchhhcchhhcCChhHhHHH
Confidence 9999999976 999999876210 1111122333333 333332 455555666778999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHh
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl 681 (709)
.|||||..+|++|+||||.++|.++--..+.+.|+++.+ +.|+++|-|++..+.+ ||||+||+.|+++.+|+++|..
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 999999999999999999999999999999999999885 4899999999999876 9999999999999999999988
Q ss_pred hcc
Q 005205 682 TKA 684 (709)
Q Consensus 682 ~~~ 684 (709)
+..
T Consensus 239 ~dp 241 (250)
T COG0411 239 NNP 241 (250)
T ss_pred cCH
Confidence 653
No 308
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.9e-39 Score=401.94 Aligned_cols=214 Identities=25% Similarity=0.390 Sum_probs=187.1
Q ss_pred eEEEEeEEEEec-CCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 458 SIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~-~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
.|+++||++.|+ +++++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.|++. +...+|+++|
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG 1006 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLG 1006 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEE
Confidence 699999999996 35789999999999999999999999999999999999999999999999999975 5677899999
Q ss_pred EEcCCCCCCch-hHHHHHHcCCC--CCCHH----HHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 005205 537 VVPQDTVLFND-TIFHNIRYGRL--SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~~--~~s~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
||||++.+|+. |++|||.++.. ..+.+ ++.+.++..+ ++........+||||||||++||||
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vg-----------L~~~~~~~~~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTG-----------LHHKRNEEAQDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999975 99999987521 12222 3333444333 3334455567899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 610 FLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 610 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
|+.+|+|||||||||+||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||||++|++|++++.|+.++|.++
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999999999999998889999999999998864 999999999999999999999875
No 309
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=371.64 Aligned_cols=212 Identities=23% Similarity=0.405 Sum_probs=172.6
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHhhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~-~~lR~~i~ 536 (709)
-|+++|+++.|. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.|+
T Consensus 265 ~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 341 (510)
T PRK09700 265 VFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341 (510)
T ss_pred EEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence 599999999763 48999999999999999999999999999999999999999999999999876554 45678999
Q ss_pred EEcCCC---CCCc-hhHHHHHHcCCCC-----------CCHHHHHHHHHHHchHHHHHhCCCCcc-ccccCCCCCCChHH
Q 005205 537 VVPQDT---VLFN-DTIFHNIRYGRLS-----------ATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGE 600 (709)
Q Consensus 537 ~V~Q~~---~LF~-gTIreNI~~g~~~-----------~s~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQ 600 (709)
||||++ .+|. -|++||+.++... .+..+. ...+.+.++.+ |+. -.....-..|||||
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq 414 (510)
T PRK09700 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVNQNITELSGGN 414 (510)
T ss_pred EccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCccCccccCChHH
Confidence 999984 5775 4999999876310 011111 11223444443 232 12233345799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChH
Q 005205 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHD 678 (709)
Q Consensus 601 rQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~ 678 (709)
|||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||++..+. .||+|++|++|+|++.++..
T Consensus 415 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 494 (510)
T PRK09700 415 QQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNR 494 (510)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecCc
Confidence 999999999999999999999999999999999999998764 5789999999998765 59999999999999988763
Q ss_pred H
Q 005205 679 D 679 (709)
Q Consensus 679 e 679 (709)
+
T Consensus 495 ~ 495 (510)
T PRK09700 495 D 495 (510)
T ss_pred c
Confidence 3
No 310
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.5e-39 Score=404.33 Aligned_cols=210 Identities=25% Similarity=0.422 Sum_probs=181.2
Q ss_pred eEEEEeEEEEec---CCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC---CCCCEEEECCEeCCCCCHHHh
Q 005205 458 SIQFDNVHFSYL---TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD---THSGSIRIDGQDICEVTLESL 531 (709)
Q Consensus 458 ~I~f~nVsF~Y~---~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~---p~~G~I~idG~di~~~~~~~l 531 (709)
.++++||+++|+ +++++|+|||++|+|||++||+||||||||||+++|+|+.+ |++|+|++||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 479999999995 24689999999999999999999999999999999999998 78999999999985 257
Q ss_pred hcceEEEcCCCC-CCchhHHHHHHcCC----C-CCCHHH----HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHH
Q 005205 532 RKSIGVVPQDTV-LFNDTIFHNIRYGR----L-SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEK 601 (709)
Q Consensus 532 R~~i~~V~Q~~~-LF~gTIreNI~~g~----~-~~s~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQr 601 (709)
|+.+|||+|++. ++..|++||+.++. | +.++++ +.++++..+ |.+-.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLE-------MESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC-------ChhhCCCeeCCCCCCCCHHHh
Confidence 899999999865 56789999998752 2 234443 333444333 344579999999999999999
Q ss_pred HHHHHHHHhccCCC-EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEecCchHH--hhcCeEEEEeCC-EEEEecC
Q 005205 602 QRVALARAFLKAPP-ILLCDEATSALDSTTEAEILNALKSL-ANNRTSIFIAHRLTTA--MQCDEIIVLENG-KVIEQGS 676 (709)
Q Consensus 602 QRiaIARAll~~p~-ILILDEaTSaLD~~tE~~I~~~L~~l-~~~~TvIvIaHRlsti--~~aD~Iivl~~G-~Ive~Gt 676 (709)
||++|||||+.+|+ ||+||||||+||+.+...|++.|+++ .+|+|+|+++|++++. +.+|+|++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999987 4689999999999973 679999999997 9999998
Q ss_pred hH
Q 005205 677 HD 678 (709)
Q Consensus 677 h~ 678 (709)
.+
T Consensus 988 ~~ 989 (1394)
T TIGR00956 988 LG 989 (1394)
T ss_pred cc
Confidence 63
No 311
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.8e-39 Score=301.16 Aligned_cols=206 Identities=34% Similarity=0.498 Sum_probs=172.1
Q ss_pred eEEEEeEEEEecC---CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH---Hh
Q 005205 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SL 531 (709)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~---~l 531 (709)
-|++++++...+. .-.+|++|+|.|++||.+|||||||||||||+-+|+||-+|++|+|.+.|+++..++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 4788888887763 23799999999999999999999999999999999999999999999999999999854 45
Q ss_pred h-cceEEEcCCCCCC-chhHHHHHHcCCC---CCCHH---HHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 532 R-KSIGVVPQDTVLF-NDTIFHNIRYGRL---SATEE---EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 532 R-~~i~~V~Q~~~LF-~gTIreNI~~g~~---~~s~~---ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
| +++|+|+|..+|. +-|-.||+.+-.. +.+.+ .-.+-++..|+.+-+. --..+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~-----------HyP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLT-----------HYPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccc-----------cCccccCchHHHH
Confidence 5 5799999999987 5699999975321 11111 1233344444444444 4446899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhhcCeEEEEeCCEEEEe
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQ 674 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~ 674 (709)
+|||||+...|+||+-||||-+||.+|-++|.+-|-.+. .|.|.++|||+.+....|||++-|.+|+|+|.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999886654 56899999999999999999999999999863
No 312
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.3e-40 Score=311.64 Aligned_cols=223 Identities=27% Similarity=0.507 Sum_probs=187.4
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHh-hcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~l-R~~i~ 536 (709)
.+..+|+..+|. .++|++++||++++||.|++.||+|+||||....+.||..|++|+|.+||.||..++...- |--||
T Consensus 4 ~L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 4 TLVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EEEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 578899999995 5789999999999999999999999999999999999999999999999999999997654 44599
Q ss_pred EEcCCCCCCch-hHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 537 VVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
|+||||.+|.+ |++|||..-- +..+.+...+-++..+++.++.+ .+...-...|..||||||.|+.|||||..+|+
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vl-E~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVL-EIREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred cccccchHhhcCcHHHHHHHHH-hhhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 99999999987 9999997543 22222333334444444444443 24444456789999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCc-hHHhhcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRL-TTAMQCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRl-sti~~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
.++||||.+++||.+-..|++-++.++. |--+++.-|.. .|+.-|||.+++.+|+|..+|+++|+.++.
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 9999999999999999999999988874 44555556885 589999999999999999999999999753
No 313
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.2e-39 Score=335.64 Aligned_cols=201 Identities=23% Similarity=0.281 Sum_probs=161.7
Q ss_pred EeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEE-----------ECCEeCCCCCHHH
Q 005205 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR-----------IDGQDICEVTLES 530 (709)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~-----------idG~di~~~~~~~ 530 (709)
.||+|+|++.+++|+|+|+ +++||++||+||||||||||+++|+|+++|++|+|. +||+++.+...+.
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4789999755579999994 999999999999999999999999999999999996 8899987765444
Q ss_pred hhc--ceEEEcCCCCCCchhHHHHHHcCCCCCC-HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 005205 531 LRK--SIGVVPQDTVLFNDTIFHNIRYGRLSAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (709)
Q Consensus 531 lR~--~i~~V~Q~~~LF~gTIreNI~~g~~~~s-~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIA 607 (709)
.|. .+++++|++.++..++.+|+...-.... ++++.++++..+ ++..+.....+||||||||++||
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~qrv~la 151 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLE-----------LRHVLDRNIDQLSGGELQRVAIA 151 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcC-----------CchhhcCChhhCCHHHHHHHHHH
Confidence 443 4788988887776565565544211111 233444444443 44445566779999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchHHhh-cCeEEEEeCCEEEEec
Q 005205 608 RAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 675 (709)
Q Consensus 608 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~G 675 (709)
||++++|+++|||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.++. ||+|++|+ |++++.|
T Consensus 152 ral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 152 AALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999988754 7999999999999885 99999994 6676644
No 314
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-38 Score=348.66 Aligned_cols=209 Identities=29% Similarity=0.461 Sum_probs=180.4
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHh-hcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~l-R~~i~ 536 (709)
-++++|++.+|++ .++|+|+||++.|||.+|++|++|||||||+|.|+|.|+|++|+|++||.+..-.++.+- ..-|+
T Consensus 8 ll~~~~i~K~Fgg-V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~ 86 (500)
T COG1129 8 LLELRGISKSFGG-VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIA 86 (500)
T ss_pred eeeeecceEEcCC-ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcE
Confidence 4899999999974 689999999999999999999999999999999999999999999999999987776654 45599
Q ss_pred EEcCCCCCCch-hHHHHHHcCCCC------CCHHHHHHHHHHHchHHHHHhCC--CCccccccCCCCCCChHHHHHHHHH
Q 005205 537 VVPQDTVLFND-TIFHNIRYGRLS------ATEEEVYDAARRAAIHDTIMNFP--AKYSTVVGERGLKLSGGEKQRVALA 607 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~~~------~s~~ei~~A~~~a~l~~~I~~Lp--~G~dT~vGe~G~~LSGGQrQRiaIA 607 (709)
+|.||..|+.. ||.|||-+|+.. .+..++.+.++.+ +..+- ...+++|+ +||+||||-++||
T Consensus 87 ~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~-----l~~lg~~~~~~~~v~----~LsiaqrQ~VeIA 157 (500)
T COG1129 87 TVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAREL-----LARLGLDIDPDTLVG----DLSIAQRQMVEIA 157 (500)
T ss_pred EEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHH-----HHHcCCCCChhhhhh----hCCHHHHHHHHHH
Confidence 99999999965 999999999742 2335554444433 33221 22666665 7999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecC
Q 005205 608 RAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGS 676 (709)
Q Consensus 608 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gt 676 (709)
||+..+++|||||||||+|+..--+.+++.+++++ +|.++|.|||||+.+.. ||||.||.||+.|..++
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999999999999999999999886 78999999999998765 99999999999997766
No 315
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-39 Score=307.38 Aligned_cols=213 Identities=34% Similarity=0.508 Sum_probs=186.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+.+|+|++-. ++.+|+++||+++|||++||+||+|||||||+|.|+|...|++|++.++|+|+.+++..++-++-++.
T Consensus 2 i~a~nls~~~~-Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 2 IRAENLSYSLA-GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred eeeeeeEEEee-cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 78899998774 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-CchhHHHHHHcCC-CC-----CCHHH--HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 005205 539 PQDTVL-FNDTIFHNIRYGR-LS-----ATEEE--VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 539 ~Q~~~L-F~gTIreNI~~g~-~~-----~s~~e--i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
||+..| |.-|++|-+.+|. |. +.+++ ..+|+..+++..|-.+ .=..|||||+||+.+||.
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----------~y~~LSGGEqQRVqlARv 149 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-----------DYRTLSGGEQQRVQLARV 149 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-----------chhhcCchHHHHHHHHHH
Confidence 999998 9999999999996 32 22344 4556666666554322 235899999999999999
Q ss_pred hcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchH-HhhcCeEEEEeCCEEEEecChHHHh
Q 005205 610 FLK------APPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTT-AMQCDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 610 ll~------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlst-i~~aD~Iivl~~G~Ive~Gth~eLl 681 (709)
|.+ ++++|+|||||||||..-...+++..+++. ++.-|++|=|+|+. .+.||||++|.+|||+..|++++.+
T Consensus 150 LaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 150 LAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred HHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 974 334889999999999999999999998875 56899999999995 5679999999999999999999988
Q ss_pred hc
Q 005205 682 TK 683 (709)
Q Consensus 682 ~~ 683 (709)
..
T Consensus 230 t~ 231 (259)
T COG4559 230 TD 231 (259)
T ss_pred CH
Confidence 64
No 316
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=8.2e-39 Score=330.03 Aligned_cols=194 Identities=24% Similarity=0.347 Sum_probs=160.7
Q ss_pred EEecCCcccceeeeeEee-----CCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcC
Q 005205 466 FSYLTERKILDGVSFVVP-----AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ 540 (709)
Q Consensus 466 F~Y~~~~~vL~~isl~I~-----~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 540 (709)
|+|++..+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .|+|+||
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q 68 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQ 68 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecc
Confidence 678876778999999987 68999999999999999999999999999999999984 6999999
Q ss_pred CCC-CCchhHHHHHHcCCCCC-C-HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 005205 541 DTV-LFNDTIFHNIRYGRLSA-T-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (709)
Q Consensus 541 ~~~-LF~gTIreNI~~g~~~~-s-~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~IL 617 (709)
++. .|+.|++||+.+..... . .+...++++..++. .........||||||||++|||||+++|+++
T Consensus 69 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~-----------~~~~~~~~~LSgGe~qrv~iaraL~~~p~ll 137 (246)
T cd03237 69 YIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIE-----------QILDREVPELSGGELQRVAIAACLSKDADIY 137 (246)
T ss_pred cccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCH-----------HHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 987 47899999997653221 1 22233444444433 3334455689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEE--EecChHHHhh
Q 005205 618 LCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVI--EQGSHDDLLT 682 (709)
Q Consensus 618 ILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Iv--e~Gth~eLl~ 682 (709)
||||||++||+++...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|+++..+ ..++++++.+
T Consensus 138 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 207 (246)
T cd03237 138 LLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRS 207 (246)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHH
Confidence 99999999999999999999998753 7999999999999885 9999999876544 5677777664
No 317
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.4e-38 Score=365.70 Aligned_cols=210 Identities=26% Similarity=0.349 Sum_probs=173.3
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+++|++++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+++ +..|+|
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~ 72 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVGY 72 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEE
Confidence 489999999997456899999999999999999999999999999999999999999999975 247999
Q ss_pred EcCCCCCCc-hhHHHHHHcCCCC-----------------CCH---------HHHHHHHHHHchH-------HHHHhCCC
Q 005205 538 VPQDTVLFN-DTIFHNIRYGRLS-----------------ATE---------EEVYDAARRAAIH-------DTIMNFPA 583 (709)
Q Consensus 538 V~Q~~~LF~-gTIreNI~~g~~~-----------------~s~---------~ei~~A~~~a~l~-------~~I~~Lp~ 583 (709)
|+|+|.+|. .|++|||.++... ..+ +++.++++.++.+ +.+..+
T Consensus 73 v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 150 (552)
T TIGR03719 73 LPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL-- 150 (552)
T ss_pred EeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--
Confidence 999999986 5999999875210 011 2344444444432 233333
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCe
Q 005205 584 KYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDE 662 (709)
Q Consensus 584 G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~ 662 (709)
|++ .......+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|++. ++|+|+|||+++.+.. ||+
T Consensus 151 ~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d~ 227 (552)
T TIGR03719 151 RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAGW 227 (552)
T ss_pred CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCe
Confidence 232 123455789999999999999999999999999999999999999999999886 3699999999999876 899
Q ss_pred EEEEeCCEEE-EecChHHHhhc
Q 005205 663 IIVLENGKVI-EQGSHDDLLTK 683 (709)
Q Consensus 663 Iivl~~G~Iv-e~Gth~eLl~~ 683 (709)
|++|++|+++ ..|++++.++.
T Consensus 228 v~~l~~g~i~~~~g~~~~~~~~ 249 (552)
T TIGR03719 228 ILELDRGRGIPWEGNYSSWLEQ 249 (552)
T ss_pred EEEEECCEEEEecCCHHHHHHH
Confidence 9999999976 67999887653
No 318
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=3.3e-39 Score=346.33 Aligned_cols=181 Identities=35% Similarity=0.534 Sum_probs=155.0
Q ss_pred EEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCch-hHHHHHHcCCC--CCCH----
Q 005205 490 IVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYGRL--SATE---- 562 (709)
Q Consensus 490 IVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~g-TIreNI~~g~~--~~s~---- 562 (709)
|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++++||+|++.+|.. |++|||.|+.. ..+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987764 46789999999999975 99999998632 1222
Q ss_pred HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 005205 563 EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA 642 (709)
Q Consensus 563 ~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~ 642 (709)
+++.++++..++.++.. ....+||||||||++|||||+++|++||||||||+||+.+.+.+.+.|+++.
T Consensus 79 ~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFAD-----------RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhc-----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 23445555555544333 3346899999999999999999999999999999999999999999998875
Q ss_pred C--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhc
Q 005205 643 N--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 643 ~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+.+.
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 3 799999999999866 4999999999999999999999875
No 319
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=6.7e-39 Score=364.69 Aligned_cols=215 Identities=24% Similarity=0.381 Sum_probs=173.8
Q ss_pred eEEEEeEEEEecC--CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-CCCEEEECCEeCCCCCH-HHhhc
Q 005205 458 SIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICEVTL-ESLRK 533 (709)
Q Consensus 458 ~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-~~G~I~idG~di~~~~~-~~lR~ 533 (709)
-|+++|++++|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 4999999999952 35799999999999999999999999999999999999996 89999999999875543 56788
Q ss_pred ceEEEcCCC---CCCc-hhHHHHHHcCCCC-------CCHHHHHHHHHHHchHHHHHhCCCCccc-cccCCCCCCChHHH
Q 005205 534 SIGVVPQDT---VLFN-DTIFHNIRYGRLS-------ATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGEK 601 (709)
Q Consensus 534 ~i~~V~Q~~---~LF~-gTIreNI~~g~~~-------~s~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQr 601 (709)
+|+||+|++ .+|. .|++||+.++... ...++ ....+.++++.+ |+.. ........||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA-----ELQIIGSAIQRL--KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHH-----HHHHHHHHHHhc--CccCCCccCccccCCHHHH
Confidence 999999996 3665 5999999875310 11111 112233444443 2221 12334467999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHH
Q 005205 602 QRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDD 679 (709)
Q Consensus 602 QRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~e 679 (709)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|+..++-++
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999888764 57899999999998865 99999999999998775433
No 320
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.7e-38 Score=363.49 Aligned_cols=210 Identities=26% Similarity=0.368 Sum_probs=170.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+++|++++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ +..|||
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~~ 74 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVGY 74 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEE
Confidence 589999999996347899999999999999999999999999999999999999999999975 247999
Q ss_pred EcCCCCCCch-hHHHHHHcCCCC----------------CCH----------HHHHHHHHHH-------chHHHHHhCCC
Q 005205 538 VPQDTVLFND-TIFHNIRYGRLS----------------ATE----------EEVYDAARRA-------AIHDTIMNFPA 583 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~~----------------~s~----------~ei~~A~~~a-------~l~~~I~~Lp~ 583 (709)
|+|+|.+|+. |++||+.++... ..+ +++.++++.+ .+.+.++.+
T Consensus 75 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 152 (556)
T PRK11819 75 LPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL-- 152 (556)
T ss_pred EecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC--
Confidence 9999999875 999999875210 000 1122222211 122333332
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCe
Q 005205 584 KYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDE 662 (709)
Q Consensus 584 G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~ 662 (709)
|++ ........||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++. .|+|+|||++..+.. ||+
T Consensus 153 gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d~ 229 (556)
T PRK11819 153 RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAGW 229 (556)
T ss_pred CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCe
Confidence 222 1233456899999999999999999999999999999999999999999999863 599999999999876 899
Q ss_pred EEEEeCCEEE-EecChHHHhhc
Q 005205 663 IIVLENGKVI-EQGSHDDLLTK 683 (709)
Q Consensus 663 Iivl~~G~Iv-e~Gth~eLl~~ 683 (709)
|++|++|+++ ..|++++.++.
T Consensus 230 i~~l~~g~i~~~~g~~~~~~~~ 251 (556)
T PRK11819 230 ILELDRGRGIPWEGNYSSWLEQ 251 (556)
T ss_pred EEEEeCCEEEEecCCHHHHHHH
Confidence 9999999987 78999987653
No 321
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=7.9e-39 Score=363.97 Aligned_cols=211 Identities=22% Similarity=0.425 Sum_probs=174.4
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHhhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~-~~lR~~i~ 536 (709)
-|+++||++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|+.|+
T Consensus 257 ~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 257 RLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred EEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 589999984 37999999999999999999999999999999999999999999999999987765 34678899
Q ss_pred EEcCCC---CCC-chhHHHHHHcCCCC--------CCHHHHHHHHHHHchHHHHHhCCCCcc-ccccCCCCCCChHHHHH
Q 005205 537 VVPQDT---VLF-NDTIFHNIRYGRLS--------ATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGEKQR 603 (709)
Q Consensus 537 ~V~Q~~---~LF-~gTIreNI~~g~~~--------~s~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQrQR 603 (709)
||||++ .+| +.|++||+.++... .+.++. ...+.++++.+ |++ .........||||||||
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGekqr 403 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQQK 403 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHHHH
Confidence 999997 344 46999999875210 111111 11233445443 332 22445567899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl 681 (709)
++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.|+.+++.
T Consensus 404 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 999999999999999999999999999999999998875 47899999999998764 9999999999999999877653
No 322
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1e-38 Score=322.77 Aligned_cols=191 Identities=20% Similarity=0.259 Sum_probs=158.5
Q ss_pred cceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEE-ECCEeCCCCCHHHhhcceEEEcCCCCCCch-hHHH
Q 005205 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR-IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFH 551 (709)
Q Consensus 474 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~-idG~di~~~~~~~lR~~i~~V~Q~~~LF~g-TIre 551 (709)
+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. ++|.++ .+.|++.+|.. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 78999999999999999999999999999999999999999997 787533 13467888876 9999
Q ss_pred HHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 005205 552 NIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDST 629 (709)
Q Consensus 552 NI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~ 629 (709)
||.+... ..+.+++.+.+. + ...|++.++++++ .||||||||++||||++++|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~-----~-~~~l~~~~~~~~~----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY-----Q-LTQLEQCYTDRVS----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH-----H-HhChhHHhhchHh----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 9987421 234444433221 1 2345666666664 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhcccHH
Q 005205 630 TEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTKAGRY 687 (709)
Q Consensus 630 tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y 687 (709)
+.+.+.+.|.+..+++|+|+|||+++.+. .||+|++|++|+|++.|+-+++....+.|
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 197 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFEQY 197 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHHH
Confidence 99999998876566789999999999986 69999999999999999998887544444
No 323
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-38 Score=362.96 Aligned_cols=209 Identities=25% Similarity=0.422 Sum_probs=170.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+|+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..|+||
T Consensus 2 l~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~ 69 (530)
T PRK15064 2 LSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGKL 69 (530)
T ss_pred EEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEE
Confidence 78999999996 468999999999999999999999999999999999999999999999972 469999
Q ss_pred cCCCCCCch-hHHHHHHcCCC----------------CCCHHH---HHHH----------HHHHchHHHHHhCCCCcccc
Q 005205 539 PQDTVLFND-TIFHNIRYGRL----------------SATEEE---VYDA----------ARRAAIHDTIMNFPAKYSTV 588 (709)
Q Consensus 539 ~Q~~~LF~g-TIreNI~~g~~----------------~~s~~e---i~~A----------~~~a~l~~~I~~Lp~G~dT~ 588 (709)
+|++.+|.. |++||+.++.. ..+.++ +.+. -....+++.++.+ |++..
T Consensus 70 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~ 147 (530)
T PRK15064 70 RQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPEE 147 (530)
T ss_pred eccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCChh
Confidence 999988764 99999987531 000000 0000 0012334445444 44322
Q ss_pred c-cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEE
Q 005205 589 V-GERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVL 666 (709)
Q Consensus 589 v-Ge~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl 666 (709)
. .....+||||||||++|||||+.+|++|||||||++||+++...+.+.|++ .++|+|+|||+++.+.. ||+|++|
T Consensus 148 ~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~l 225 (530)
T PRK15064 148 QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMADL 225 (530)
T ss_pred HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEE
Confidence 2 234578999999999999999999999999999999999999999999975 47999999999998765 9999999
Q ss_pred eCCEE-EEecChHHHhhc
Q 005205 667 ENGKV-IEQGSHDDLLTK 683 (709)
Q Consensus 667 ~~G~I-ve~Gth~eLl~~ 683 (709)
++|++ ++.|++++.++.
T Consensus 226 ~~g~i~~~~g~~~~~~~~ 243 (530)
T PRK15064 226 DYGELRVYPGNYDEYMTA 243 (530)
T ss_pred eCCEEEEecCCHHHHHHH
Confidence 99999 478999988753
No 324
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-38 Score=362.70 Aligned_cols=204 Identities=25% Similarity=0.414 Sum_probs=173.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +.+||
T Consensus 319 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~~ 386 (530)
T PRK15064 319 ALEVENLTKGFDN-GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIGY 386 (530)
T ss_pred eEEEEeeEEeeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEEE
Confidence 5999999999964 57999999999999999999999999999999999999999999999982 57999
Q ss_pred EcCCCC--CC-chhHHHHHHcCC-CCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 538 VPQDTV--LF-NDTIFHNIRYGR-LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 538 V~Q~~~--LF-~gTIreNI~~g~-~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
|+|++. ++ +.|++||+.+.. +...++++.++++..++.+ .........||||||||++||||++.+
T Consensus 387 ~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGq~qrv~la~al~~~ 456 (530)
T PRK15064 387 YAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQ----------DDIKKSVKVLSGGEKGRMLFGKLMMQK 456 (530)
T ss_pred EcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCCh----------hHhcCcccccCHHHHHHHHHHHHHhcC
Confidence 999974 44 369999997532 2223455666666655421 112334568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEE-EecChHHHhhccc
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI-EQGSHDDLLTKAG 685 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Iv-e~Gth~eLl~~~g 685 (709)
|+||||||||++||+.+.+.+.+.|+++ +.|+|+|||++..+.. ||+|++|++|+++ +.|+++++++.+|
T Consensus 457 p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~ 528 (530)
T PRK15064 457 PNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQG 528 (530)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHhC
Confidence 9999999999999999999999999986 4699999999998875 9999999999998 7899998877654
No 325
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-39 Score=364.96 Aligned_cols=212 Identities=22% Similarity=0.394 Sum_probs=173.4
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHhhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~-~~lR~~i~ 536 (709)
.++++||++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+.++
T Consensus 257 ~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 331 (501)
T PRK11288 257 RLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331 (501)
T ss_pred EEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE
Confidence 5899999853 48999999999999999999999999999999999999999999999999876543 45678999
Q ss_pred EEcCCCC---CC-chhHHHHHHcCCCCC--------CHHHHHHHHHHHchHHHHHhCCCCcc-ccccCCCCCCChHHHHH
Q 005205 537 VVPQDTV---LF-NDTIFHNIRYGRLSA--------TEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGEKQR 603 (709)
Q Consensus 537 ~V~Q~~~---LF-~gTIreNI~~g~~~~--------s~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQrQR 603 (709)
|+||++. +| +.|+.||+.++.... ...+- ...+++++..+ |++ .........||||||||
T Consensus 332 ~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qr 404 (501)
T PRK11288 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQQK 404 (501)
T ss_pred EcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHHHH
Confidence 9999972 55 579999998753110 11111 11233444443 221 12233445899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl 681 (709)
++||||++.+|++|||||||++||+.+.+.+.+.|+++. .+.|+|+|||+++.+. .||+|++|++|++++.|+.+|..
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 999999999999999999999999999999999998875 4789999999999885 59999999999999999988765
No 326
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2e-38 Score=300.61 Aligned_cols=143 Identities=36% Similarity=0.566 Sum_probs=135.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
++++||+++|++ .++|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.+||. +.++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~ 68 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYF 68 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEE
Confidence 578999999964 47999999999999999999999999999999999999999999999994 479999
Q ss_pred cCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 005205 539 PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILL 618 (709)
Q Consensus 539 ~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILI 618 (709)
+| ||+||+||++||||++++|+++|
T Consensus 69 ~~-------------------------------------------------------lS~G~~~rv~laral~~~p~ill 93 (144)
T cd03221 69 EQ-------------------------------------------------------LSGGEKMRLALAKLLLENPNLLL 93 (144)
T ss_pred cc-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 99 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCE
Q 005205 619 CDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGK 670 (709)
Q Consensus 619 LDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~ 670 (709)
|||||++||+.+...+.+.|+++ ++|+|++||+++.+.. ||+|++|++||
T Consensus 94 lDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 94 LDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999986 5799999999999865 89999999986
No 327
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.6e-39 Score=298.32 Aligned_cols=214 Identities=33% Similarity=0.532 Sum_probs=181.0
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC----------
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT---------- 527 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~---------- 527 (709)
.++.+|+..+|. ...||++|||+.++|+.+.|+|.|||||||++++|-=|-.|++|+|.++|..|+--.
T Consensus 6 ~l~v~dlHK~~G-~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 6 ALEVEDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred ceehhHHHhhcc-cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 589999999995 457999999999999999999999999999999999999999999999998774322
Q ss_pred ---HHHhhcceEEEcCCCCCCc-hhHHHHHHcCCC---CCCHHHH-HH---HHHHHchHHHHHhCCCCccccccCCCCCC
Q 005205 528 ---LESLRKSIGVVPQDTVLFN-DTIFHNIRYGRL---SATEEEV-YD---AARRAAIHDTIMNFPAKYSTVVGERGLKL 596 (709)
Q Consensus 528 ---~~~lR~~i~~V~Q~~~LF~-gTIreNI~~g~~---~~s~~ei-~~---A~~~a~l~~~I~~Lp~G~dT~vGe~G~~L 596 (709)
.+-+|.+.++|+|..-|++ .|+.||+.=+.- ..+.+|. .+ -+.++|+.|--. .-...|
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-----------~YP~~L 153 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-----------AYPAHL 153 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-----------cCcccc
Confidence 4568999999999999986 599999853210 1233332 22 233445544333 335789
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEe
Q 005205 597 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQ 674 (709)
Q Consensus 597 SGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~ 674 (709)
||||.||.||||||.-+|+++++|||||||||+---.+.+-++.+. +|||.++|||-+...++ +..++.|.+|+|-|+
T Consensus 154 SGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~ 233 (256)
T COG4598 154 SGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEE 233 (256)
T ss_pred CchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceeccc
Confidence 9999999999999999999999999999999999999999888875 68999999999999998 789999999999999
Q ss_pred cChHHHhhc
Q 005205 675 GSHDDLLTK 683 (709)
Q Consensus 675 Gth~eLl~~ 683 (709)
|+++++..+
T Consensus 234 G~P~qvf~n 242 (256)
T COG4598 234 GPPEQVFGN 242 (256)
T ss_pred CChHHHhcC
Confidence 999999864
No 328
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.5e-38 Score=391.35 Aligned_cols=217 Identities=20% Similarity=0.351 Sum_probs=185.7
Q ss_pred ceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 457 g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
.-|+++||+++|++ .+++|+|+||+|++||++||+|++|||||||+|+|+|+.+|++|+|.++|.++.. +....|++|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 35999999999975 3689999999999999999999999999999999999999999999999999975 456788999
Q ss_pred EEEcCCCCCCc-hhHHHHHHcCC--CCCCHHH----HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 536 GVVPQDTVLFN-DTIFHNIRYGR--LSATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 536 ~~V~Q~~~LF~-gTIreNI~~g~--~~~s~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
||+||++.++. -|++|||.+.. ...++++ +.++++..++.++. ......||||||||++|||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~-----------dk~~~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYA-----------DRLAGTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHHH
Confidence 99999999886 59999997631 1123333 33444445554432 3344689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhccc
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTKAG 685 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~~g 685 (709)
||+.+|+||+||||||+||+.+.+.+.+.|+++. +|+|+|++||.++.++. ||||++|++|++++.|+.++|.++-|
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 9999999999999999999999999999998864 57999999999998875 99999999999999999999977643
No 329
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=6.2e-38 Score=335.35 Aligned_cols=210 Identities=30% Similarity=0.484 Sum_probs=178.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH-HhhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE-SLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~-~lR~~i~ 536 (709)
.|+++|++..|| +-.+++||||+|++||+-||.|++|+|||||++.|.|+|+|++|+|++||++++--++. ..|.-||
T Consensus 4 ~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 4 ALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred eEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 589999999998 66789999999999999999999999999999999999999999999999998876655 5667799
Q ss_pred EEcCCCCCCch-hHHHHHHcCCCCC-----CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 537 VVPQDTVLFND-TIFHNIRYGRLSA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~~~~-----s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
+|.|.+.|++. |+.|||.+|.+.. +..+.. +.+.+..+++ |++-...+.-..||-|||||+.|-+||
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~-----~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaL 155 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQAR-----ARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKAL 155 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHH-----HHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHH
Confidence 99999999976 9999999997532 222221 1222333332 344444455568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEec
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 675 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~G 675 (709)
+++|+|||||||||-|-|.--+.+++.|+++. .|+|+|+|||+|..++. |||+-||.+||+|..-
T Consensus 156 yr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~ 222 (501)
T COG3845 156 YRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV 222 (501)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee
Confidence 99999999999999999999999999999886 68999999999999877 9999999999987543
No 330
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=5.3e-38 Score=357.60 Aligned_cols=213 Identities=20% Similarity=0.355 Sum_probs=174.4
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH-hhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~-lR~~i~ 536 (709)
-|+++|+++ .+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|+.|+
T Consensus 268 ~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 341 (510)
T PRK15439 268 VLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341 (510)
T ss_pred eEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcE
Confidence 499999984 2699999999999999999999999999999999999999999999999998877654 467899
Q ss_pred EEcCCC---CCCc-hhHHHHHHcCC----CC-CCHHHHHHHHHHHchHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHH
Q 005205 537 VVPQDT---VLFN-DTIFHNIRYGR----LS-ATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGEKQRVAL 606 (709)
Q Consensus 537 ~V~Q~~---~LF~-gTIreNI~~g~----~~-~s~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQrQRiaI 606 (709)
||||++ .+|. .|+.||+.... +. ....+. ...+.+++..+ |++ .........||||||||++|
T Consensus 342 ~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl~l 414 (510)
T PRK15439 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRAL--NIKFNHAEQAARTLSGGNQQKVLI 414 (510)
T ss_pred ECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHc--CCCCCCccCccccCCcHHHHHHHH
Confidence 999986 3665 49999985421 10 011111 11233445444 333 23444556899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 607 ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 607 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|+..|+.+++...
T Consensus 415 a~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~ 493 (510)
T PRK15439 415 AKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVD 493 (510)
T ss_pred HHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCHH
Confidence 999999999999999999999999999999998875 47999999999999875 999999999999999998877643
No 331
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-38 Score=287.72 Aligned_cols=213 Identities=31% Similarity=0.539 Sum_probs=182.0
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCE--eCCCCC----HHHh
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ--DICEVT----LESL 531 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~--di~~~~----~~~l 531 (709)
.|+++|++|.|. ...+|.||+|+.+.|+++.+.||||+|||||++.|-=+--|.+|+..|-|. |.+..+ ...|
T Consensus 2 sirv~~in~~yg-~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFYG-AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEcccccccc-cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 489999999996 467999999999999999999999999999999999999999999999774 444443 4579
Q ss_pred hcceEEEcCCCCCCc-hhHHHHHHcCC---CCCCHH----HHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 532 RKSIGVVPQDTVLFN-DTIFHNIRYGR---LSATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 532 R~~i~~V~Q~~~LF~-gTIreNI~~g~---~~~s~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
|+.+|+|+|.-.|+. -|+-||+.=.. ...+++ +-.+.++...+.+|-+++| ..|||||.||
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqqqr 149 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQR 149 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchhhh
Confidence 999999999999986 59999985321 012332 3345556667777777766 4799999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl 681 (709)
+||||||.-+|++|++||||+||||+--.+|.+-|+++. .|-|-++|||.....+. |.+++.||+|+|||+|+|.-.-
T Consensus 150 vaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft 229 (242)
T COG4161 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhcc
Confidence 999999999999999999999999999999999999986 47899999999998876 8999999999999999997665
Q ss_pred h
Q 005205 682 T 682 (709)
Q Consensus 682 ~ 682 (709)
+
T Consensus 230 ~ 230 (242)
T COG4161 230 E 230 (242)
T ss_pred C
Confidence 4
No 332
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-38 Score=311.97 Aligned_cols=197 Identities=33% Similarity=0.532 Sum_probs=178.6
Q ss_pred eeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeC----CCCCHHHhhcceEEEcCCCCCCc-hhHHH
Q 005205 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI----CEVTLESLRKSIGVVPQDTVLFN-DTIFH 551 (709)
Q Consensus 477 ~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di----~~~~~~~lR~~i~~V~Q~~~LF~-gTIre 551 (709)
+++|+.+.--.+||-|+||||||||+|+|+|+..|++|.|.+||.-+ +.+...--+++||||+||.-||. -||+-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 68899988889999999999999999999999999999999999866 44556677889999999999996 59999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 005205 552 NIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTE 631 (709)
Q Consensus 552 NI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE 631 (709)
|++||....+.++..+++..-|+...+.++| .+||||||||+||+|||+.+|++|+||||.|+||-...
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 9999987777888888999999988888877 48999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC--CeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 632 AEILNALKSLANN--RTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 632 ~~I~~~L~~l~~~--~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
++|+--|+++.++ --++.|||.+..+ +-||+|+||++||+...|.-+|.++..
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 9999999888754 5689999999865 569999999999999999999998754
No 333
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.2e-37 Score=353.65 Aligned_cols=206 Identities=23% Similarity=0.312 Sum_probs=165.9
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-CCCEEEECCEeCCC-CCHHHhhcce
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICE-VTLESLRKSI 535 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-~~G~I~idG~di~~-~~~~~lR~~i 535 (709)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.++.. .+...+|++|
T Consensus 260 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 338 (490)
T PRK10938 260 RIVLNNGVVSYND-RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI 338 (490)
T ss_pred eEEEeceEEEECC-eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc
Confidence 5999999999963 5799999999999999999999999999999999998876 69999999987632 2344578899
Q ss_pred EEEcCCCCCCc---hhHHHHHHcCCC-------CCCH---HHHHHHHHHHchHHHHHhCCCCccc-cccCCCCCCChHHH
Q 005205 536 GVVPQDTVLFN---DTIFHNIRYGRL-------SATE---EEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGEK 601 (709)
Q Consensus 536 ~~V~Q~~~LF~---gTIreNI~~g~~-------~~s~---~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQr 601 (709)
+||+|++.++. .|+++|+.++.. .... +++.++++..++ +. ........||||||
T Consensus 339 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGq~ 407 (490)
T PRK10938 339 GYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGI-----------DKRTADAPFHSLSWGQQ 407 (490)
T ss_pred eEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCC-----------chhhccCchhhCCHHHH
Confidence 99999987643 477777754310 0111 223334443333 22 22334568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEecCchHHhh--cCeEEEEeCCEEEEec
Q 005205 602 QRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-N-RTSIFIAHRLTTAMQ--CDEIIVLENGKVIEQG 675 (709)
Q Consensus 602 QRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~-~TvIvIaHRlsti~~--aD~Iivl~~G~Ive~G 675 (709)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ + .|+|+|||+++.+.. ||+|++|++|+|++.-
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 999999999999999999999999999999999999988753 3 469999999999974 8999999999998753
No 334
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-37 Score=349.40 Aligned_cols=211 Identities=23% Similarity=0.345 Sum_probs=170.1
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH-HhhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE-SLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~-~lR~~i~ 536 (709)
-|+++||+++| +++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.+||.++...+.. .+|+.++
T Consensus 250 ~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 250 ILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred EEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 59999999985 3699999999999999999999999999999999999999999999999999877654 4577899
Q ss_pred EEcCCCC---CCc-hhHHHH-----HHcCCCC---CCHHHHHHHHHHHchHHHHHhCCCCcc-ccccCCCCCCChHHHHH
Q 005205 537 VVPQDTV---LFN-DTIFHN-----IRYGRLS---ATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGEKQR 603 (709)
Q Consensus 537 ~V~Q~~~---LF~-gTIreN-----I~~g~~~---~s~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQrQR 603 (709)
|+||++. +|. .|+.+| +.+..+. .+.++..+ .+.++++.+ |+. -........||||||||
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qr 399 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSM--RVKTPGHRTQIGSLSGGNQQK 399 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhc--CccCCCcccccccCCcHHHHH
Confidence 9999963 565 467666 4322111 12222211 223344444 221 11344556899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChH
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHD 678 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~ 678 (709)
++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+++..++.+
T Consensus 400 v~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 400 VIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999999999999998764 5799999999999886 59999999999999888654
No 335
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-37 Score=292.48 Aligned_cols=204 Identities=27% Similarity=0.439 Sum_probs=168.5
Q ss_pred eEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
.+..++++.+|++ ..++|+|+|++|++||.|+++||||||||||+++++||.+|..|+|.+||.+|..-.- .=|
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 3567889999974 2459999999999999999999999999999999999999999999999999876553 358
Q ss_pred EEcCCCCCCch-hHHHHHHcCCC--CCCHHHH----HHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 005205 537 VVPQDTVLFND-TIFHNIRYGRL--SATEEEV----YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~~--~~s~~ei----~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
+|+|++-|+.- |+.||+.||-. ..+.++- .+.+..+++.++ + -..-..||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~--------~---~~~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGA--------E---HKYIWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccc--------c---ccceEeecchHHHHHHHHHH
Confidence 99999999986 99999999842 2333322 222333344332 1 12346899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchH-HhhcCeEEEEe--CCEEEEecCh
Q 005205 610 FLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTT-AMQCDEIIVLE--NGKVIEQGSH 677 (709)
Q Consensus 610 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlst-i~~aD~Iivl~--~G~Ive~Gth 677 (709)
|..+|+.|+||||.+|||+-|.+++|+.|-.+. .++-+++|||.++. +--|++++||+ .||||+.=+.
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999999999987665 57999999999875 55699999998 5899986544
No 336
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-37 Score=294.11 Aligned_cols=155 Identities=49% Similarity=0.756 Sum_probs=146.2
Q ss_pred EEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEc
Q 005205 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (709)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 539 (709)
+++|++|.|++ +++++++||+|++|++++|+|++|||||||+++|+|+++|++|+|++||.++.+.....+++.++|++
T Consensus 1 ~~~~~~~~~~~-~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 1 EIENLSFRYGG-RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred CeEEEEEEeCC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 37899999964 47999999999999999999999999999999999999999999999999999888888899999999
Q ss_pred CCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 005205 540 QDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLC 619 (709)
Q Consensus 540 Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILIL 619 (709)
| |||||+||++||||++.+|+++||
T Consensus 80 q-------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 80 Q-------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred e-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchHHhh-cCeEEEEeCCE
Q 005205 620 DEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQ-CDEIIVLENGK 670 (709)
Q Consensus 620 DEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRlsti~~-aD~Iivl~~G~ 670 (709)
||||++||.++...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999988754 4899999999999998 59999999985
No 337
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.4e-36 Score=354.50 Aligned_cols=199 Identities=26% Similarity=0.372 Sum_probs=166.9
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+|+|++++++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ +..|+|
T Consensus 508 ~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~igy 576 (718)
T PLN03073 508 IISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRMAV 576 (718)
T ss_pred eEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeEEE
Confidence 599999999997556799999999999999999999999999999999999999999999876 247999
Q ss_pred EcCCCCCCchhHHHHHHcC----CCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 538 VPQDTVLFNDTIFHNIRYG----RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 538 V~Q~~~LF~gTIreNI~~g----~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
++|++. ...++.+|+.+. .+..+++++.++++..++.+.. .......||||||||++||||++.+
T Consensus 577 v~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL~~~ 645 (718)
T PLN03073 577 FSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKK 645 (718)
T ss_pred Eecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHHhcC
Confidence 999973 333555664321 2345677777777777664321 1223568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEE-EecChHHH
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI-EQGSHDDL 680 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Iv-e~Gth~eL 680 (709)
|++|||||||++||+.+...+.+.|.+. + .|+|+|||++..+.. ||+|++|++|+|+ ..|++++.
T Consensus 646 p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 646 PHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999999999875 3 499999999999875 9999999999998 57887764
No 338
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.3e-36 Score=296.82 Aligned_cols=151 Identities=28% Similarity=0.360 Sum_probs=135.5
Q ss_pred EeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCC
Q 005205 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541 (709)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~ 541 (709)
.||+++|+ ++++++++ |+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++|+
T Consensus 4 ~~l~~~~~-~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q~ 69 (177)
T cd03222 4 PDCVKRYG-VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQY 69 (177)
T ss_pred CCeEEEEC-CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEccc
Confidence 58899995 46789884 9999999999999999999999999999999999999999963 8899997
Q ss_pred CCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 005205 542 TVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDE 621 (709)
Q Consensus 542 ~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDE 621 (709)
+. ||||||||++||||++.+|++++|||
T Consensus 70 ~~----------------------------------------------------LSgGq~qrv~laral~~~p~lllLDE 97 (177)
T cd03222 70 ID----------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDE 97 (177)
T ss_pred CC----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 63 99999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchHHh-hcCeEEEEeCCEEEEe--cChH
Q 005205 622 ATSALDSTTEAEILNALKSLA-N-NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQ--GSHD 678 (709)
Q Consensus 622 aTSaLD~~tE~~I~~~L~~l~-~-~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~--Gth~ 678 (709)
||++||+++.+.+.+.|+++. + ++|+|+|||+++.++ .||+|++|+++-.+.+ |.+.
T Consensus 98 Pts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 999999999999999998874 3 389999999999988 4999999998866533 4444
No 339
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.4e-36 Score=374.51 Aligned_cols=212 Identities=25% Similarity=0.383 Sum_probs=178.2
Q ss_pred ceEEEEeEEEEecC------------CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC--CCCEEEECCEe
Q 005205 457 GSIQFDNVHFSYLT------------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQD 522 (709)
Q Consensus 457 g~I~f~nVsF~Y~~------------~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p--~~G~I~idG~d 522 (709)
..++|+||+|.++. .+++|+|+|++|+||+++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 36999999998851 23699999999999999999999999999999999999874 78999999988
Q ss_pred CCCCCHHHhhcceEEEcCCCCCCc-hhHHHHHHcCC----C-CCCHHH----HHHHHHHHchHHHHHhCCCCccccccCC
Q 005205 523 ICEVTLESLRKSIGVVPQDTVLFN-DTIFHNIRYGR----L-SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGER 592 (709)
Q Consensus 523 i~~~~~~~lR~~i~~V~Q~~~LF~-gTIreNI~~g~----~-~~s~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~ 592 (709)
.+ ...+|+.+|||+|++.++. .|++|||.|+. | +.++++ +.+.++..++. +-.|+.+|..
T Consensus 946 ~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-------~~~~~~vg~~ 1015 (1470)
T PLN03140 946 KK---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-------NLKDAIVGLP 1015 (1470)
T ss_pred CC---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-------hHhCCccCCC
Confidence 65 3467888999999987775 59999998752 2 233333 34455544443 3358888865
Q ss_pred C-CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchH--HhhcCeEEEEeC
Q 005205 593 G-LKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTT--AMQCDEIIVLEN 668 (709)
Q Consensus 593 G-~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlst--i~~aD~Iivl~~ 668 (709)
+ ..||||||||++|||||+.+|+||+||||||+||+.+...|.+.|+++. +|+|+|+++|+++. .+.||++++|++
T Consensus 1016 ~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~ 1095 (1470)
T PLN03140 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1095 (1470)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcC
Confidence 5 6899999999999999999999999999999999999999999999875 57999999999984 577999999996
Q ss_pred -CEEEEecChH
Q 005205 669 -GKVIEQGSHD 678 (709)
Q Consensus 669 -G~Ive~Gth~ 678 (709)
|+++..|+.+
T Consensus 1096 gG~~v~~G~~~ 1106 (1470)
T PLN03140 1096 GGQVIYSGPLG 1106 (1470)
T ss_pred CCEEEEECCcc
Confidence 8999999853
No 340
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.5e-36 Score=345.91 Aligned_cols=202 Identities=26% Similarity=0.372 Sum_probs=164.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+++|+ ++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+++ ++ .|||
T Consensus 324 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i~~ 391 (556)
T PRK11819 324 VIEAENLSKSFG-DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KLAY 391 (556)
T ss_pred EEEEEeEEEEEC-CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EEEE
Confidence 599999999996 45799999999999999999999999999999999999999999999964 21 5999
Q ss_pred EcCCC-CCCc-hhHHHHHHcCCCC--C--CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 538 VPQDT-VLFN-DTIFHNIRYGRLS--A--TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 538 V~Q~~-~LF~-gTIreNI~~g~~~--~--s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
|||++ .++. -|++||+.++... . .+++..++++..++ ++ .........||||||||++||||++
T Consensus 392 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l-------~~---~~~~~~~~~LSgG~~qrv~la~al~ 461 (556)
T PRK11819 392 VDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNF-------KG---GDQQKKVGVLSGGERNRLHLAKTLK 461 (556)
T ss_pred EeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCC-------Ch---hHhcCchhhCCHHHHHHHHHHHHHh
Confidence 99997 5654 5999999876321 1 12222333333222 11 0123334589999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeC-CEEEE-ecChHHHhhc
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLEN-GKVIE-QGSHDDLLTK 683 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~-G~Ive-~Gth~eLl~~ 683 (709)
.+|++|||||||++||+.+...+.+.|+++. .|+|+|||.+..+.. ||+|++|++ |++++ .|+++++++.
T Consensus 462 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 462 QGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999999999999999999999873 499999999998765 999999996 88874 7888877654
No 341
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=345.24 Aligned_cols=200 Identities=25% Similarity=0.397 Sum_probs=165.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+++|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..|||
T Consensus 312 ~l~~~~l~~~y~-~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy 379 (638)
T PRK10636 312 LLKMEKVSAGYG-DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGY 379 (638)
T ss_pred eEEEEeeEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEE
Confidence 599999999996 467999999999999999999999999999999999999999999999741 26999
Q ss_pred EcCCC--CCCc-hhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 538 VPQDT--VLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 538 V~Q~~--~LF~-gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
++|++ .++. .|+.+|+....+...++++.+.++..++.+ ..+......||||||||++||||++.+|
T Consensus 380 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGekqRl~La~~l~~~p 449 (638)
T PRK10636 380 FAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQG----------DKVTEETRRFSGGEKARLVLALIVWQRP 449 (638)
T ss_pred ecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCCh----------hHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 99985 3443 488888753223233444555554444321 1122234589999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEE-EecChHHHh
Q 005205 615 PILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI-EQGSHDDLL 681 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Iv-e~Gth~eLl 681 (709)
++|||||||++||+.+...+.+.|+++ . .|+|+|||++..+.. ||+|++|++|+|+ ..|++++..
T Consensus 450 ~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 450 NLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999999999999999987 3 599999999998865 9999999999998 689998874
No 342
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=7.3e-36 Score=343.19 Aligned_cols=200 Identities=27% Similarity=0.384 Sum_probs=163.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+++|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+.+|++|+|.+++ ++ .|||
T Consensus 322 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i~~ 389 (552)
T TIGR03719 322 VIEAENLSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KLAY 389 (552)
T ss_pred EEEEeeEEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EEEE
Confidence 599999999996 45799999999999999999999999999999999999999999999965 21 6999
Q ss_pred EcCCCC-CCc-hhHHHHHHcCCCC--CC--HHHHHHHHHHHchHHHHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHh
Q 005205 538 VPQDTV-LFN-DTIFHNIRYGRLS--AT--EEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 538 V~Q~~~-LF~-gTIreNI~~g~~~--~s--~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|||++. ++. .|++||+.++.+. .. +++..+ .+..+ |++. ........||||||||++|||||
T Consensus 390 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgGe~qrv~la~al 458 (552)
T TIGR03719 390 VDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA---------YVGRF--NFKGSDQQKKVGQLSGGERNRVHLAKTL 458 (552)
T ss_pred EeCCccccCCCCcHHHHHHhhccccccCcchHHHHH---------HHHhC--CCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 999973 554 5999999886421 11 222222 23332 2322 12334568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeC-CEEE-EecChHHHhh
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLEN-GKVI-EQGSHDDLLT 682 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~-G~Iv-e~Gth~eLl~ 682 (709)
+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|||++..+.. ||+|++|++ |+++ ..|+++++.+
T Consensus 459 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 459 KSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 99999999999999999999999999999873 499999999998875 999999997 6876 4578776654
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=8.6e-36 Score=347.36 Aligned_cols=201 Identities=28% Similarity=0.452 Sum_probs=164.4
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+++|+ ++++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.+ |.++ .|||
T Consensus 319 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~y 386 (635)
T PRK11147 319 VFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVAY 386 (635)
T ss_pred eEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEEE
Confidence 489999999996 467999999999999999999999999999999999999999999999 4332 5999
Q ss_pred EcCCC-CCCc-hhHHHHHHcCCCCC--C--HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 538 VPQDT-VLFN-DTIFHNIRYGRLSA--T--EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 538 V~Q~~-~LF~-gTIreNI~~g~~~~--s--~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
++|++ .++. .|+.||+.++.+.. + +.++.+.++..++. ++..+.++ ..||||||||++||||++
T Consensus 387 ~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~----~~LSgGekqRl~la~al~ 456 (635)
T PRK11147 387 FDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFH------PKRAMTPV----KALSGGERNRLLLARLFL 456 (635)
T ss_pred EeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCC------HHHHhChh----hhCCHHHHHHHHHHHHHh
Confidence 99986 4655 49999998864322 1 22233333322221 11223333 579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEe-CCEEEE-ecChHHHhh
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLE-NGKVIE-QGSHDDLLT 682 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~-~G~Ive-~Gth~eLl~ 682 (709)
.+|++|||||||++||..+...+.+.|++. +.|+|+|||++..+.. ||+|++|+ +|+|++ .|++++-++
T Consensus 457 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 457 KPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 999999999999999999999999999886 4699999999998864 99999998 899986 578887654
No 344
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=8.2e-36 Score=290.91 Aligned_cols=161 Identities=29% Similarity=0.395 Sum_probs=134.2
Q ss_pred CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHH
Q 005205 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (709)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIr 550 (709)
..++|+|+||+|++|++++|+||||||||||+++++ +++|+|.++|.. ... .|+.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH----------
Confidence 457999999999999999999999999999999996 379999998762 221 2456889888
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC--CCEEEEeCCCCCCCH
Q 005205 551 HNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA--PPILLCDEATSALDS 628 (709)
Q Consensus 551 eNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~--p~ILILDEaTSaLD~ 628 (709)
.+++..++-+.. .+.++...||||||||++||||++++ |+++||||||++||+
T Consensus 68 ------------------------~~~l~~~~L~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 68 ------------------------LQFLIDVGLGYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred ------------------------HHHHHHcCCCcc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 123444432221 25667789999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEEeC------CEEEEec
Q 005205 629 TTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLEN------GKVIEQG 675 (709)
Q Consensus 629 ~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl~~------G~Ive~G 675 (709)
++.+.+.+.|+++. .++|+|+|||+++.++.||+|++|++ |++||.|
T Consensus 123 ~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 176 (176)
T cd03238 123 QDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176 (176)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCCCCcEEEecC
Confidence 99999999998875 58999999999999999999999965 5666654
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.5e-35 Score=340.20 Aligned_cols=192 Identities=21% Similarity=0.293 Sum_probs=162.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+.+|++|+|.++ ..++|
T Consensus 340 ~l~~~~ls~~~~~--~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y 404 (590)
T PRK13409 340 LVEYPDLTKKLGD--FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISY 404 (590)
T ss_pred EEEEcceEEEECC--EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEE
Confidence 5999999999964 35999999999999999999999999999999999999999999986 15999
Q ss_pred EcCCCCC-CchhHHHHHHcCCCCCC-HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 538 VPQDTVL-FNDTIFHNIRYGRLSAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 538 V~Q~~~L-F~gTIreNI~~g~~~~s-~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
+||++.+ ++.|++||+.++..... +..+.++++..++.+.. ...-..||||||||++|||||+++|+
T Consensus 405 ~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~-----------~~~~~~LSGGe~QRvaiAraL~~~p~ 473 (590)
T PRK13409 405 KPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLL-----------DKNVKDLSGGELQRVAIAACLSRDAD 473 (590)
T ss_pred ecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHH-----------hCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999875 56799999987632222 23345555555554432 23345799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecC
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGS 676 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gt 676 (709)
||||||||++||+++...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++ +++..|+
T Consensus 474 llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 474 LYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 9999999999999999999999998753 7899999999998764 999999965 8887776
No 346
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-36 Score=285.80 Aligned_cols=221 Identities=29% Similarity=0.514 Sum_probs=190.7
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+.+|. .+.||+++|++||+|+.++|+||+|+|||||+..++||.++++|+|.+||.++.+++-++|-+.+++.
T Consensus 2 I~i~nv~K~y~-~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 2 ITIENVSKSYG-TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred eeehhhhHhhC-CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 78999999995 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCc-hhHHHHHHcCC-C------CCCHH-HHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 005205 539 PQDTVLFN-DTIFHNIRYGR-L------SATEE-EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 539 ~Q~~~LF~-gTIreNI~~g~-~------~~s~~-ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
-|+..+-. -||||=+.||+ | ...|. -|.+|++--++.+ |.+.| =..||||||||-=||-.
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~----l~dry-------Ld~LSGGQrQRAfIAMV 149 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED----LSDRY-------LDELSGGQRQRAFIAMV 149 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc----hHHHh-------HHhcccchhhhhhhhee
Confidence 99998755 49999999996 2 22222 3456666555443 22222 24799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhcccH
Q 005205 610 FLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTKAGR 686 (709)
Q Consensus 610 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~~g~ 686 (709)
+.+|.+-++||||..+||-.-...+++.|+++.+ +||+++|=|+.+.... +|.|+-|++|++|.+|+++|.++.. .
T Consensus 150 laQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~-~ 228 (252)
T COG4604 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPE-I 228 (252)
T ss_pred eeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHH-H
Confidence 9999999999999999999999999999988763 7999999999998765 8999999999999999999999753 3
Q ss_pred HHHHHH
Q 005205 687 YAQLWG 692 (709)
Q Consensus 687 Y~~l~~ 692 (709)
..++|.
T Consensus 229 L~eiyd 234 (252)
T COG4604 229 LSEIYD 234 (252)
T ss_pred HHHHhc
Confidence 444543
No 347
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.8e-35 Score=368.07 Aligned_cols=207 Identities=27% Similarity=0.319 Sum_probs=171.2
Q ss_pred cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCC----CCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCc-
Q 005205 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF----DTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN- 546 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly----~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~- 546 (709)
+++|+|+|++++|||++||+||||||||||+|+|+|+. .|.+|+|.+||+++.+.+ ..+|+.++||+|++.+|.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 35899999999999999999999999999999999986 579999999999987654 356788999999988886
Q ss_pred hhHHHHHHcCC----C-----CCCHHHHHHHHHHHchHHHHHhCCCCccccccC-CCCCCChHHHHHHHHHHHhccCCCE
Q 005205 547 DTIFHNIRYGR----L-----SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGE-RGLKLSGGEKQRVALARAFLKAPPI 616 (709)
Q Consensus 547 gTIreNI~~g~----~-----~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe-~G~~LSGGQrQRiaIARAll~~p~I 616 (709)
-|++|||.|+. | +.+++|..+.....-++. ..|.+-.||.||+ ....||||||||++|||||+.+|+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMAT--YGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHH--cCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 49999998852 1 123333322111111111 2455667899986 4578999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCch-H-HhhcCeEEEEeCCEEEEecChHHHh
Q 005205 617 LLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLT-T-AMQCDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 617 LILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRls-t-i~~aD~Iivl~~G~Ive~Gth~eLl 681 (709)
|+||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ . .+.+|+|++|++|+++..|+.+++.
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 999999999999999999999999863 799999999974 4 4569999999999999999998884
No 348
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=336.80 Aligned_cols=209 Identities=25% Similarity=0.336 Sum_probs=162.8
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+++|+ ++++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.. .++|+
T Consensus 2 i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~~ 69 (638)
T PRK10636 2 IVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAWV 69 (638)
T ss_pred EEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEEE
Confidence 78999999995 4679999999999999999999999999999999999999999999999841 48899
Q ss_pred cCCCCCCchhHHHHHHcCCCC---CCH-----------HHHHHHH----------HHHchHHHHHhCCCCcc-ccccCCC
Q 005205 539 PQDTVLFNDTIFHNIRYGRLS---ATE-----------EEVYDAA----------RRAAIHDTIMNFPAKYS-TVVGERG 593 (709)
Q Consensus 539 ~Q~~~LF~gTIreNI~~g~~~---~s~-----------~ei~~A~----------~~a~l~~~I~~Lp~G~d-T~vGe~G 593 (709)
+|++..+..|+.+++.-+... .+. ..+.... ....+.+.+..+ |++ ......-
T Consensus 70 ~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~~~ 147 (638)
T PRK10636 70 NQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLERPV 147 (638)
T ss_pred ecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcCch
Confidence 997665666766655321100 000 0000000 011233344443 332 1233345
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEE
Q 005205 594 LKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI 672 (709)
Q Consensus 594 ~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Iv 672 (709)
..||||||||++|||||+.+|+||||||||++||+++-..+.+.|++. +.|+|+|||+...+.. ||+|++|++|+++
T Consensus 148 ~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~ 225 (638)
T PRK10636 148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSLF 225 (638)
T ss_pred hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEE
Confidence 689999999999999999999999999999999999999999999875 5799999999998865 9999999999997
Q ss_pred E-ecChHHHhhc
Q 005205 673 E-QGSHDDLLTK 683 (709)
Q Consensus 673 e-~Gth~eLl~~ 683 (709)
+ .|++++.+..
T Consensus 226 ~~~g~~~~~~~~ 237 (638)
T PRK10636 226 EYTGNYSSFEVQ 237 (638)
T ss_pred EecCCHHHHHHH
Confidence 4 7888877653
No 349
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.8e-35 Score=303.83 Aligned_cols=225 Identities=30% Similarity=0.499 Sum_probs=186.7
Q ss_pred eEEEEeEEEEec---CCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCCCCHH
Q 005205 458 SIQFDNVHFSYL---TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEVTLE 529 (709)
Q Consensus 458 ~I~f~nVsF~Y~---~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-----~~G~I~idG~di~~~~~~ 529 (709)
-++++|+|.+|. ....++++|||+|.+||++||||+||||||--+..++||.+- .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 378899888875 245899999999999999999999999999999999999865 479999999999999988
Q ss_pred Hhhc----ceEEEcCCCCC-Cc------hhHHHHHHcCCC---CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCC
Q 005205 530 SLRK----SIGVVPQDTVL-FN------DTIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (709)
Q Consensus 530 ~lR~----~i~~V~Q~~~L-F~------gTIreNI~~g~~---~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~ 595 (709)
.+|+ .|++++|||.- .| .-|.|-|.+.+- .+-.+++.+.++.+|+.+- .-.+..--..
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhCCcc
Confidence 8886 79999999963 11 234556665431 2335667777777776542 1223344568
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeCCEEE
Q 005205 596 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI 672 (709)
Q Consensus 596 LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~G~Iv 672 (709)
||||||||+-||-||..+|++||=||||.|||....++|.+-|+++. .|..+++|||+|+.++. ||||+||.+|+||
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 99999999999999999999999999999999999999999998875 46899999999999987 9999999999999
Q ss_pred EecChHHHhhc-ccHHHHH
Q 005205 673 EQGSHDDLLTK-AGRYAQL 690 (709)
Q Consensus 673 e~Gth~eLl~~-~g~Y~~l 690 (709)
|+|+-++|.+. ...|-+.
T Consensus 238 E~~~t~~lF~~PqHpYTr~ 256 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRK 256 (534)
T ss_pred ecCcHHHHhhCCCChHHHH
Confidence 99999999975 4556443
No 350
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=8.4e-35 Score=280.08 Aligned_cols=204 Identities=26% Similarity=0.425 Sum_probs=176.2
Q ss_pred CCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCC--C-c
Q 005205 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL--F-N 546 (709)
Q Consensus 470 ~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~L--F-~ 546 (709)
.++++|+++||+|+.|++|-|+|.+|||||||++.|+|-..|++|+|+|||+|+..++...--..++-|+|||.. + +
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 457899999999999999999999999999999999999999999999999999999999988899999999974 3 4
Q ss_pred hhHHHHHHcCCCC-----CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 005205 547 DTIFHNIRYGRLS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDE 621 (709)
Q Consensus 547 gTIreNI~~g~~~-----~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDE 621 (709)
-||.||+.++... .+. -...-+.....+-+..+|.|++-.++.+-.-|||||||=++++-|.++.|+||+|||
T Consensus 97 lTieENl~la~~Rg~~rgl~~--~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE 174 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSS--ALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE 174 (263)
T ss_pred ccHHHHHHHHHhcCcccccch--hhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc
Confidence 5999999887421 221 112234445566789999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchH-HhhcCeEEEEeCCEEEEec
Q 005205 622 ATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTT-AMQCDEIIVLENGKVIEQG 675 (709)
Q Consensus 622 aTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlst-i~~aD~Iivl~~G~Ive~G 675 (709)
-|+||||.+...|++.=.+.- .+-|+++|||.+.- +..-+|.+||++|+||-.=
T Consensus 175 HTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 175 HTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred hhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 999999999999997644432 35699999999975 5557999999999999643
No 351
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.2e-34 Score=359.49 Aligned_cols=208 Identities=26% Similarity=0.396 Sum_probs=171.6
Q ss_pred cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCC---CCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCc-h
Q 005205 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-D 547 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~---~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~-g 547 (709)
+++|+|+|++|+|||+++|+||||||||||+|+|+|+++|+ +|+|.+||+++.+.. .|+.++||+|++.+|. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 45899999999999999999999999999999999999998 999999999987764 3788999999987775 5
Q ss_pred hHHHHHHcCCC------------CCCHH----------HH---HHHHHHHc------hHHHH--HhCCCCccccccCCC-
Q 005205 548 TIFHNIRYGRL------------SATEE----------EV---YDAARRAA------IHDTI--MNFPAKYSTVVGERG- 593 (709)
Q Consensus 548 TIreNI~~g~~------------~~s~~----------ei---~~A~~~a~------l~~~I--~~Lp~G~dT~vGe~G- 593 (709)
|++|||.|+.. +.+.+ ++ .+++...+ .++.+ ..|.+-.||.||+..
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999987521 01111 11 11111111 12233 245666789998754
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCc--hHHhhcCeEEEEeCC
Q 005205 594 LKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRL--TTAMQCDEIIVLENG 669 (709)
Q Consensus 594 ~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRl--sti~~aD~Iivl~~G 669 (709)
..||||||||++||||++.+|++|+|||||++||+.+...|.+.|+++. .++|+|+++|.+ .+...+|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 6899999999999999999999999999999999999999999999985 478999999996 456779999999999
Q ss_pred EEEEecChHHHhh
Q 005205 670 KVIEQGSHDDLLT 682 (709)
Q Consensus 670 ~Ive~Gth~eLl~ 682 (709)
+++..|+.+|+++
T Consensus 415 ~ivy~G~~~~~~~ 427 (1470)
T PLN03140 415 QIVYQGPRDHILE 427 (1470)
T ss_pred eEEEeCCHHHHHH
Confidence 9999999998863
No 352
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2e-34 Score=270.02 Aligned_cols=214 Identities=27% Similarity=0.436 Sum_probs=177.8
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCC-Cc-----
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL-FN----- 546 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~L-F~----- 546 (709)
.+.+.|||++++|+++||+|.+|||||||+|.|.|..+|++|+|++||+++.-=+.+..-++|-+++|||.- ||
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 688999999999999999999999999999999999999999999999999877777777889999999952 32
Q ss_pred hhH-----HHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 005205 547 DTI-----FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDE 621 (709)
Q Consensus 547 gTI-----reNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDE 621 (709)
|+| +-|-.+ .|++-.++|.+-++.+|+. |+--+- .-..||-|||||+|+||||+-+|+|+|-||
T Consensus 107 GqiLd~PL~l~T~~-~~~~R~~~i~~TL~~VGL~------Pdhan~----~~~~la~~QKQRVaLARALIL~P~iIIaDe 175 (267)
T COG4167 107 GQILDFPLRLNTDL-EPEQRRKQIFETLRMVGLL------PDHANY----YPHMLAPGQKQRVALARALILRPKIIIADE 175 (267)
T ss_pred hhHhcchhhhcccC-ChHHHHHHHHHHHHHhccC------cccccc----chhhcCchhHHHHHHHHHHhcCCcEEEehh
Confidence 222 222222 2334567788888888874 442221 246899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHh--cCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc--ccHHHHHHHhhhc
Q 005205 622 ATSALDSTTEAEILNALKSL--ANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK--AGRYAQLWGQQNN 696 (709)
Q Consensus 622 aTSaLD~~tE~~I~~~L~~l--~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~--~g~Y~~l~~~q~~ 696 (709)
|..+||.....++..-.-++ ..|-.-|.|+..+-.+++ +|+|+||++|++||.|+..|+++. ...-++|.+....
T Consensus 176 Al~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkRlieShFg 255 (267)
T COG4167 176 ALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIESHFG 255 (267)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHHHHHHHhc
Confidence 99999999999988765444 357899999999999998 899999999999999999999975 4566778877654
Q ss_pred c
Q 005205 697 T 697 (709)
Q Consensus 697 ~ 697 (709)
.
T Consensus 256 ~ 256 (267)
T COG4167 256 E 256 (267)
T ss_pred c
Confidence 3
No 353
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.1e-33 Score=329.58 Aligned_cols=208 Identities=25% Similarity=0.403 Sum_probs=160.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+++|+ ++++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|. . .+++
T Consensus 3 ~l~i~~ls~~~~-~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-~----------~~~~ 70 (635)
T PRK11147 3 LISIHGAWLSFS-DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-L----------IVAR 70 (635)
T ss_pred EEEEeeEEEEeC-CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-C----------EEEE
Confidence 389999999996 468999999999999999999999999999999999999999999999872 1 2677
Q ss_pred EcCCCCC-CchhHHHHHHcCCC-----------------CCC-HHHHHHHHH-------------HHchHHHHHhCCCCc
Q 005205 538 VPQDTVL-FNDTIFHNIRYGRL-----------------SAT-EEEVYDAAR-------------RAAIHDTIMNFPAKY 585 (709)
Q Consensus 538 V~Q~~~L-F~gTIreNI~~g~~-----------------~~s-~~ei~~A~~-------------~a~l~~~I~~Lp~G~ 585 (709)
++|++.. ..+|+.+++..+.. ..+ ++.+....+ ...+.+.+..+ |+
T Consensus 71 l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl 148 (635)
T PRK11147 71 LQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--GL 148 (635)
T ss_pred eccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--CC
Confidence 8886632 23566666532210 000 111100000 11233334443 23
Q ss_pred cccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEE
Q 005205 586 STVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEII 664 (709)
Q Consensus 586 dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Ii 664 (709)
+ ....-..||||||||++|||||+.+|+||||||||++||+++...+.+.|+++ +.|+|+|||+...+.. ||+|+
T Consensus 149 ~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i~ 224 (635)
T PRK11147 149 D--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRIV 224 (635)
T ss_pred C--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeEE
Confidence 2 12344689999999999999999999999999999999999999999999887 3699999999998875 99999
Q ss_pred EEeCCEEEE-ecChHHHhhc
Q 005205 665 VLENGKVIE-QGSHDDLLTK 683 (709)
Q Consensus 665 vl~~G~Ive-~Gth~eLl~~ 683 (709)
+|++|+++. .|++++.++.
T Consensus 225 ~L~~G~i~~~~g~~~~~~~~ 244 (635)
T PRK11147 225 DLDRGKLVSYPGNYDQYLLE 244 (635)
T ss_pred EEECCEEEEecCCHHHHHHH
Confidence 999999985 5999887654
No 354
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.4e-34 Score=332.18 Aligned_cols=193 Identities=21% Similarity=0.294 Sum_probs=158.3
Q ss_pred EeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEE-----------ECCEeCCCCCHHH
Q 005205 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR-----------IDGQDICEVTLES 530 (709)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~-----------idG~di~~~~~~~ 530 (709)
++++++|.+...+|++++ ++++||++|||||||||||||+++|+|+++|++|+|. ++|.++.++..+-
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 348899975557999999 9999999999999999999999999999999999998 9999987654221
Q ss_pred --hhcce----EEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 531 --LRKSI----GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 531 --lR~~i----~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
.+..+ .+++|.|.+|.+|++||+.+.+ ..+++.++++..++.+. .|. .-.+||||||||+
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~---~~~~~~~~l~~l~l~~~-------~~~----~~~~LSgGe~qrv 221 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD---ERGKLDEVVERLGLENI-------LDR----DISELSGGELQRV 221 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh---HHHHHHHHHHHcCCchh-------hcC----ChhhCCHHHHHHH
Confidence 12234 4555677788899999997531 23445555555554332 233 3457999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCC
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENG 669 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G 669 (709)
+|||||+++|++||||||||+||+.+...+.+.|+++.+++|+|+|+|+++.+.. ||+|++|++|
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999998668999999999998865 8999999873
No 355
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-33 Score=279.15 Aligned_cols=210 Identities=30% Similarity=0.422 Sum_probs=172.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHhhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~-~~lR~~i~ 536 (709)
-|+|+||++.|. ++++|+|||++|+|||.-+|+|++|||||||++++.+.++|++|.+.+-|+....-+. .++|++||
T Consensus 31 li~l~~v~v~r~-gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG 109 (257)
T COG1119 31 LIELKNVSVRRN-GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG 109 (257)
T ss_pred eEEecceEEEEC-CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhC
Confidence 599999999994 6899999999999999999999999999999999999999999999999999988877 99999999
Q ss_pred EEcC---CCCCCchhHHHHHHcC------CC--CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 005205 537 VVPQ---DTVLFNDTIFHNIRYG------RL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (709)
Q Consensus 537 ~V~Q---~~~LF~gTIreNI~~g------~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRia 605 (709)
+|+- +-+.=+.+++|=+.=| .. ..++++..+|-... +.+ |.....+..=..||-|||||+-
T Consensus 110 ~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~ll------e~~--g~~~la~r~~~~LS~Ge~rrvL 181 (257)
T COG1119 110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLL------ELL--GAKHLADRPFGSLSQGEQRRVL 181 (257)
T ss_pred ccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHH------HHc--chhhhccCchhhcCHhHHHHHH
Confidence 9984 3333356677766322 21 45555554333222 111 2333334445689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecC
Q 005205 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN---NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGS 676 (709)
Q Consensus 606 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~---~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gt 676 (709)
|||||+++|++|||||||++||...-+...+.|.++.. +.|+|+|||+...+.. .++++.+++|+++.+|.
T Consensus 182 iaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 182 IARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999999999999999999999999999887753 5789999999987765 59999999999998874
No 356
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=4.3e-33 Score=325.35 Aligned_cols=221 Identities=22% Similarity=0.286 Sum_probs=164.9
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCC---CCCCCEEEECCEeCCC--CCH----
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF---DTHSGSIRIDGQDICE--VTL---- 528 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly---~p~~G~I~idG~di~~--~~~---- 528 (709)
.|+++||+|+|+ ++++|+|+||+|++|+++||||+||||||||+++|+|.. .|++|+|.+.++++.. .+.
T Consensus 177 ~I~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v 255 (718)
T PLN03073 177 DIHMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCV 255 (718)
T ss_pred eEEEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHH
Confidence 699999999996 457999999999999999999999999999999999864 5899999875554321 111
Q ss_pred --------HHhhcceEEEcCCCCCCchhHHHHHHcCC-CCCCHH----HHHHHHHHHch----------HHHHHhCCCCc
Q 005205 529 --------ESLRKSIGVVPQDTVLFNDTIFHNIRYGR-LSATEE----EVYDAARRAAI----------HDTIMNFPAKY 585 (709)
Q Consensus 529 --------~~lR~~i~~V~Q~~~LF~gTIreNI~~g~-~~~s~~----ei~~A~~~a~l----------~~~I~~Lp~G~ 585 (709)
..+++.+++++|++.+...+..+|..... ...+.+ ++.++.+..++ .+.+..+ |+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l--gl 333 (718)
T PLN03073 256 LNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL--SF 333 (718)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC--CC
Confidence 12356689999988765545555542211 111222 22232222211 2222222 22
Q ss_pred cc-cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeE
Q 005205 586 ST-VVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEI 663 (709)
Q Consensus 586 dT-~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~I 663 (709)
+. .....-.+||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+|||++..+.. ||+|
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i 411 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDI 411 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEE
Confidence 21 112223579999999999999999999999999999999999999999999886 6899999999999877 9999
Q ss_pred EEEeCCEEE-EecChHHHhhc
Q 005205 664 IVLENGKVI-EQGSHDDLLTK 683 (709)
Q Consensus 664 ivl~~G~Iv-e~Gth~eLl~~ 683 (709)
++|++|+++ ..|++++....
T Consensus 412 ~~l~~g~i~~~~g~~~~~~~~ 432 (718)
T PLN03073 412 LHLHGQKLVTYKGDYDTFERT 432 (718)
T ss_pred EEEECCEEEEeCCCHHHHHHH
Confidence 999999996 57888766543
No 357
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-32 Score=267.23 Aligned_cols=224 Identities=25% Similarity=0.384 Sum_probs=187.9
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCCCEEEECCEeCCCCCHHHh-hcc
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKS 534 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl--y~p~~G~I~idG~di~~~~~~~l-R~~ 534 (709)
-++++|++.+-.+.+++|++|||+|++||+.||.||+|||||||.+.|+|. |++++|+|++||+||.++++++. |.-
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~G 82 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAG 82 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcC
Confidence 478999998875435999999999999999999999999999999999996 68999999999999999998874 455
Q ss_pred eEEEcCCCCCCch-hHHHHHHcCCCC---------CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 535 IGVVPQDTVLFND-TIFHNIRYGRLS---------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 535 i~~V~Q~~~LF~g-TIreNI~~g~~~---------~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
|.+-+|.|.=+.| |+.+=++.+... ...+++.++++..++++... +-.|. ..+|||+|.|.
T Consensus 83 ifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l------~R~vN---~GFSGGEkKR~ 153 (251)
T COG0396 83 IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFL------ERYVN---EGFSGGEKKRN 153 (251)
T ss_pred CEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHh------hcccC---CCcCcchHHHH
Confidence 9999999999998 888877644211 22566777787777776222 22233 46999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhc--CeEEEEeCCEEEEecChHHHh
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQC--DEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~a--D~Iivl~~G~Ive~Gth~eLl 681 (709)
.|+.+++-+|++.|||||-|+||-++-+.|-+.++++. +++++++|||.-..+... |++.||-+|+||..|.. ||.
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~ 232 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELA 232 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHH
Confidence 99999999999999999999999999999999998876 579999999998888776 99999999999999999 887
Q ss_pred hc--ccHHHHHH
Q 005205 682 TK--AGRYAQLW 691 (709)
Q Consensus 682 ~~--~g~Y~~l~ 691 (709)
.. ..-|..+.
T Consensus 233 ~~le~~gy~~~~ 244 (251)
T COG0396 233 EELEEKGYDWLK 244 (251)
T ss_pred HHHHHhchHHhh
Confidence 53 22354443
No 358
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=7.3e-34 Score=266.86 Aligned_cols=136 Identities=46% Similarity=0.720 Sum_probs=125.7
Q ss_pred ceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchh-HHHHH
Q 005205 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDT-IFHNI 553 (709)
Q Consensus 475 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gT-IreNI 553 (709)
|+|+||+|++|++++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|++|++.+|.+. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999885 9999
Q ss_pred HcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 005205 554 RYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATS 624 (709)
Q Consensus 554 ~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTS 624 (709)
..++++.++++..++.+ ..++.++.+...||||||||++||||++++|++|||||||+
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 34667777777776654 46788888999999999999999999999999999999997
No 359
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.8e-33 Score=318.84 Aligned_cols=218 Identities=35% Similarity=0.513 Sum_probs=186.2
Q ss_pred ceEEEEeEEEEecCC----cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC---CCCEEEECCEeCCCCCHH
Q 005205 457 GSIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT---HSGSIRIDGQDICEVTLE 529 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p---~~G~I~idG~di~~~~~~ 529 (709)
-+++|+|++..-+.. +.+|+|||.+++|||.+||.||||||||||++.|+|--++ .+|+|++|| +..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG---~~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG---RPRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC---ccCchh
Confidence 368999999988643 6899999999999999999999999999999999999875 799999999 456678
Q ss_pred HhhcceEEEcCCCCCCch-hHHHHHHcCC----CC-CCHHHHHHHHHHHchHHHHHhCCCC--ccccccC-CCCCCChHH
Q 005205 530 SLRKSIGVVPQDTVLFND-TIFHNIRYGR----LS-ATEEEVYDAARRAAIHDTIMNFPAK--YSTVVGE-RGLKLSGGE 600 (709)
Q Consensus 530 ~lR~~i~~V~Q~~~LF~g-TIreNI~~g~----~~-~s~~ei~~A~~~a~l~~~I~~Lp~G--~dT~vGe-~G~~LSGGQ 600 (709)
.+|+..|||+||..++.. ||+|++.|.. |. .+.+|..+. +++.|.+|..- -||.||. .+..+||||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~-----V~~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRER-----VEEVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHH-----HHHHHHHcCChhhccceecCCCCCccccch
Confidence 999999999999999965 9999998762 22 244443332 33445555443 5788985 347899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchH--HhhcCeEEEEeCCEEEEecCh
Q 005205 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTT--AMQCDEIIVLENGKVIEQGSH 677 (709)
Q Consensus 601 rQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlst--i~~aD~Iivl~~G~Ive~Gth 677 (709)
|+|++||--++.||+||+||||||+||+.+..++.+.|+++. +|||||+.=|.++. ....|++++|.+|++|-.|+.
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCH
Confidence 999999999999999999999999999999999999999875 58999999999985 667999999999999999999
Q ss_pred HHHhh
Q 005205 678 DDLLT 682 (709)
Q Consensus 678 ~eLl~ 682 (709)
+++.+
T Consensus 256 ~~~~~ 260 (613)
T KOG0061|consen 256 RELLE 260 (613)
T ss_pred HHHHH
Confidence 88764
No 360
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.5e-33 Score=271.61 Aligned_cols=215 Identities=24% Similarity=0.493 Sum_probs=185.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.+++++|+.+|. ++.+++|+||+++||++.+++|++|+||||.+++|+||.+|++|+|.++|.+++. ..++.|||
T Consensus 2 ~L~ie~vtK~Fg-~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIGy 76 (300)
T COG4152 2 ALEIEGVTKSFG-DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIGY 76 (300)
T ss_pred ceEEecchhccC-ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhccc
Confidence 479999999995 6789999999999999999999999999999999999999999999999998875 56788999
Q ss_pred EcCCCCCCch-hHHHHHHcCC--CCCCHHHHHHHHHHHchHHHHHhCCC-CccccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 538 VPQDTVLFND-TIFHNIRYGR--LSATEEEVYDAARRAAIHDTIMNFPA-KYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~--~~~s~~ei~~A~~~a~l~~~I~~Lp~-G~dT~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
.|.|--|+.. |+.|-|.|.. ...+.+|+.+- +..|++++.- |+. ..+-..||-|..|+|-+--|++++
T Consensus 77 LPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i~~~~---~~kIk~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 77 LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEIVGKK---TKKIKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred ChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhccccccc---cchHHHhhhhhhHHHHHHHHHhcC
Confidence 9999999964 9999998863 23455555332 3456666542 222 234568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhccc
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTKAG 685 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~~g 685 (709)
|+++|||||.|+|||.+.+.+.+++.++. +|.|+|.-+||++-++. ||+++.|++|+.|-+|+-++..+..|
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999999988775 68999999999998876 99999999999999999988876433
No 361
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.9e-32 Score=268.19 Aligned_cols=188 Identities=30% Similarity=0.434 Sum_probs=159.4
Q ss_pred cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCC--chhH
Q 005205 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF--NDTI 549 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF--~gTI 549 (709)
.++|+||||++++||++||||++|||||||+|+|+|.|+|++|+|.++|. |+...--..=| +-|-
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-------------v~~li~lg~Gf~pelTG 106 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-------------VAPLIELGAGFDPELTG 106 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-------------EehhhhcccCCCcccch
Confidence 36999999999999999999999999999999999999999999999994 33222222223 2488
Q ss_pred HHHHHcCC--CCCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 005205 550 FHNIRYGR--LSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEAT 623 (709)
Q Consensus 550 reNI~~g~--~~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaT 623 (709)
||||.+-. ...+ ++.+.+..+-|++.||+. .|| .+.|-|.+-|||+|=|.--+|+||||||+.
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~-------~Pv----ktYSSGM~aRLaFsia~~~~pdILllDEvl 175 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID-------QPV----KTYSSGMYARLAFSVATHVEPDILLLDEVL 175 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhh-------Cch----hhccHHHHHHHHHhhhhhcCCCEEEEehhh
Confidence 99996521 2233 445566778888999874 333 589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh-cCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 624 SALDSTTEAEILNALKSL-ANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 624 SaLD~~tE~~I~~~L~~l-~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
|..|+.=.++=++.++++ .+++|+|+|+|.+++|+. ||++++|++|+|+..|+.+|.++.
T Consensus 176 avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 176 AVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 999999888888888887 688999999999999987 999999999999999999999874
No 362
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=100.00 E-value=2e-28 Score=261.16 Aligned_cols=332 Identities=20% Similarity=0.269 Sum_probs=242.3
Q ss_pred HHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 005205 316 NDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGI------ 389 (709)
Q Consensus 316 ~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v------ 389 (709)
+.+.......+.|-+.|-.|+-.+.+.++.+...+..........+...++..+-.+++--. |-|..+|
T Consensus 300 g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYv-----Wsg~GlvmvsiPI 374 (728)
T KOG0064|consen 300 GYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYT-----WSGTGLVMVSIPI 374 (728)
T ss_pred cHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hccCceEEEEeee
Confidence 34455667788899999999999999988888777666554443333333332222221100 1111111
Q ss_pred ------hcCCcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------cc
Q 005205 390 ------LSGEMT--------VGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEK-------------AD 442 (709)
Q Consensus 390 ------~~g~lt--------vG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~-------------~~ 442 (709)
..|... ...++..-.++......+..++..+.++++..+--.|+++.++.- ++
T Consensus 375 ~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e 454 (728)
T KOG0064|consen 375 LTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPE 454 (728)
T ss_pred eecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCc
Confidence 112111 123344444566667778888888889998888888888664210 01
Q ss_pred ccCC------CCCCCCCC-----CCceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC
Q 005205 443 IQDR------DNAMPLNL-----KGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (709)
Q Consensus 443 ~~~~------~~~~~~~~-----~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p 511 (709)
+.+. .+..+.+. ....|.++||-.--|..+-+...++|+|++|..+-|.||+|||||+|.+.|.|+||.
T Consensus 455 ~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv 534 (728)
T KOG0064|consen 455 ILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV 534 (728)
T ss_pred hhhccCccccccCCcCCccchhhcccceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc
Confidence 0000 00011100 123499999988777667788999999999999999999999999999999999999
Q ss_pred CCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCC-------CCCCHHHHHHHHHHHchHHHHHhCCCC
Q 005205 512 HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR-------LSATEEEVYDAARRAAIHDTIMNFPAK 584 (709)
Q Consensus 512 ~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~-------~~~s~~ei~~A~~~a~l~~~I~~Lp~G 584 (709)
..|...+-- +.+|=|+||.|+.=-||.||-|.|-+ .+.+|.|+++.++.+.++. |.+-..|
T Consensus 535 y~g~L~~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~-i~qr~~g 602 (728)
T KOG0064|consen 535 YNGLLSIPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEH-ILQREGG 602 (728)
T ss_pred cCCeeecCC-----------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHH-HHHhccC
Confidence 988776532 33599999999988999999998864 3688999999999999985 6666788
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEE
Q 005205 585 YSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEII 664 (709)
Q Consensus 585 ~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Ii 664 (709)
+|..-. =---||||+|||+++||.++++|+--+|||+|||+-.+.|..|+++.++ -|-+.|.|+||.|..+.-...+
T Consensus 603 ~da~~d-Wkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~--~gi~llsithrpslwk~h~~ll 679 (728)
T KOG0064|consen 603 WDAVRD-WKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD--AGISLLSITHRPSLWKYHTHLL 679 (728)
T ss_pred hhhhcc-HHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh--cCceEEEeecCccHHHHHHHHH
Confidence 887643 2346999999999999999999999999999999999999999999988 5889999999999988766655
Q ss_pred EEe
Q 005205 665 VLE 667 (709)
Q Consensus 665 vl~ 667 (709)
-.|
T Consensus 680 ~~d 682 (728)
T KOG0064|consen 680 EFD 682 (728)
T ss_pred hcc
Confidence 553
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=6.2e-32 Score=302.87 Aligned_cols=210 Identities=28% Similarity=0.434 Sum_probs=168.9
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++| +++++++|+||++.+|+++||||++|||||||+|+|+|...|++|+|..++- -.|+|
T Consensus 3 ~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~~ 70 (530)
T COG0488 3 MITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVGY 70 (530)
T ss_pred eEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEEE
Confidence 48999999999 5789999999999999999999999999999999999999999999998761 25999
Q ss_pred EcCCCCCCch-hHHHHHHcCCCCCC--HHHHHHHHH-------------------------HHchHHHHHhCCCCccccc
Q 005205 538 VPQDTVLFND-TIFHNIRYGRLSAT--EEEVYDAAR-------------------------RAAIHDTIMNFPAKYSTVV 589 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~~~s--~~ei~~A~~-------------------------~a~l~~~I~~Lp~G~dT~v 589 (709)
++|++.+.+. |+.|.+..+..... ..+..++.. .+.+...+..| |+...
T Consensus 71 l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~~- 147 (530)
T COG0488 71 LSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPDE- 147 (530)
T ss_pred eCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCcc-
Confidence 9999999966 99999988753211 111111110 02222223322 22211
Q ss_pred cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeC
Q 005205 590 GERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLEN 668 (709)
Q Consensus 590 Ge~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~ 668 (709)
...-.+||||||-|++|||||+.+|+||+|||||.+||.++-.-+.+-|.+. ++ |+|+|||+-..+.. |++|+-+|.
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ld~ 225 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILELDR 225 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEecC
Confidence 2223579999999999999999999999999999999999999999999875 45 99999999999988 899999999
Q ss_pred CEEE-EecChHHHhhcc
Q 005205 669 GKVI-EQGSHDDLLTKA 684 (709)
Q Consensus 669 G~Iv-e~Gth~eLl~~~ 684 (709)
|++. -.|+|+.-++..
T Consensus 226 g~l~~y~Gny~~~~~~r 242 (530)
T COG0488 226 GKLTPYKGNYSSYLEQK 242 (530)
T ss_pred CceeEecCCHHHHHHHH
Confidence 9885 568888777654
No 364
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=7.4e-32 Score=245.26 Aligned_cols=196 Identities=27% Similarity=0.441 Sum_probs=162.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCC---CCEEEECCEeCCCCCHHHhhcc
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVTLESLRKS 534 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~---~G~I~idG~di~~~~~~~lR~~ 534 (709)
-+.++||+.+-+ +.-.|-|+||+|.+||++-|.||||||||||+.-+.|..+|+ +|++.+|++++..++. -+++
T Consensus 2 ~l~l~nvsl~l~-g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa--~qRq 78 (213)
T COG4136 2 MLCLKNVSLRLP-GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA--AQRQ 78 (213)
T ss_pred ceeeeeeeecCC-CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch--hhhh
Confidence 367899998775 567899999999999999999999999999999999999884 8999999999998874 4689
Q ss_pred eEEEcCCCCCCch-hHHHHHHcCCCC-----CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 535 IGVVPQDTVLFND-TIFHNIRYGRLS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 535 i~~V~Q~~~LF~g-TIreNI~~g~~~-----~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
+|+.+||++||.- +|-+||.|.-|. +-......|+++.+++++..+.| .+||||||-|+|+-|
T Consensus 79 ~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~R 147 (213)
T COG4136 79 IGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALLR 147 (213)
T ss_pred eeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHHH
Confidence 9999999999975 999999998652 22344556777777777776665 479999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHH----HHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecCh
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNA----LKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSH 677 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~----L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth 677 (709)
+|+..|+.|+||||.|.||..-..+..+- ++. .+--+|.|||++.-+.. +++|+|.+-.
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~--agiPtv~VTHD~~Dvpa--------gsrVie~~~~ 210 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRA--AGIPTVQVTHDLQDVPA--------GSRVIEMAQW 210 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHh--cCCCeEEEecccccCCC--------CCeeeeeehh
Confidence 99999999999999999998766555443 433 47789999999987763 4566665543
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.2e-31 Score=273.43 Aligned_cols=193 Identities=23% Similarity=0.342 Sum_probs=130.6
Q ss_pred CCcccceeeeeEeeCCcEEEEEcCCCccHHHHH-HHHhcCCCCCCCEEEEC-C------EeCCCC---CHHHhhc-ceEE
Q 005205 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSFDTHSGSIRID-G------QDICEV---TLESLRK-SIGV 537 (709)
Q Consensus 470 ~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~-~LL~rly~p~~G~I~id-G------~di~~~---~~~~lR~-~i~~ 537 (709)
.+.++|+|+||+|++||++||+|+||||||||+ ..+. .+|++.+. + ..+..+ ....++. ..++
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAI 80 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceE
Confidence 356899999999999999999999999999996 4442 13433221 0 111111 1111222 3445
Q ss_pred EcCCCCC-C-----chhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHh
Q 005205 538 VPQDTVL-F-----NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 538 V~Q~~~L-F-----~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQrQRiaIARAl 610 (709)
..|++.. + -+++.+...+...-...++..+. .+.++.+ |+.. ........||||||||++|||||
T Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral 152 (226)
T cd03270 81 AIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRER------LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQI 152 (226)
T ss_pred EecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHH
Confidence 5555431 1 12233332221100011111111 1233333 2332 34566789999999999999999
Q ss_pred ccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEE------eCCEEEEec
Q 005205 611 LKAP--PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL------ENGKVIEQG 675 (709)
Q Consensus 611 l~~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl------~~G~Ive~G 675 (709)
+.+| ++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.++.||+|++| ++|+|||+|
T Consensus 153 ~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 153 GSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 9998 5999999999999999999999998864 578999999999999999999999 999999987
No 366
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=5.7e-31 Score=249.78 Aligned_cols=214 Identities=23% Similarity=0.404 Sum_probs=182.1
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECC-EeCCCCCHHHh-hcce
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG-QDICEVTLESL-RKSI 535 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG-~di~~~~~~~l-R~~i 535 (709)
-++++||+.+++ +-.+|+|+||+|.|||.-+|+||+|+||||++..|.|--+|++|+++++| .|+..++.... |.-|
T Consensus 5 iL~~~~vsVsF~-GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 5 ILYLDGVSVSFG-GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred eEEEeceEEEEc-ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 478999999985 45799999999999999999999999999999999999999999999999 99999996665 5569
Q ss_pred EEEcCCCCCCch-hHHHHHHcCCCC--------------CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHH
Q 005205 536 GVVPQDTVLFND-TIFHNIRYGRLS--------------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (709)
Q Consensus 536 ~~V~Q~~~LF~g-TIreNI~~g~~~--------------~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 600 (709)
|==+|.|..|.. |++||+.+.... ...+++.+.+...++.+ ....-...||-||
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~-----------~~~~~A~~LSHGq 152 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD-----------ERDRLAALLSHGQ 152 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccch-----------hhhhhhhhhccch
Confidence 999999999976 999999765310 11223444444444433 2333456899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHH
Q 005205 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDD 679 (709)
Q Consensus 601 rQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~e 679 (709)
||++.|+--+.++|++|+||||++++-.+-.+..-+-|+.+.+.+++++|-|++..++. ||+|-||..|.|...|+-+|
T Consensus 153 KQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~ 232 (249)
T COG4674 153 KQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDE 232 (249)
T ss_pred hhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHH
Confidence 99999999999999999999999998766666788888999999999999999999986 99999999999999999999
Q ss_pred Hhhc
Q 005205 680 LLTK 683 (709)
Q Consensus 680 Ll~~ 683 (709)
+-+.
T Consensus 233 v~~d 236 (249)
T COG4674 233 VQND 236 (249)
T ss_pred hhcC
Confidence 8764
No 367
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=5.4e-30 Score=287.31 Aligned_cols=204 Identities=31% Similarity=0.429 Sum_probs=176.8
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
.-++++||+|+|++++++++++||.|++|+++|||||+|+|||||+|+|+|-..|.+|+|.++-. -++|
T Consensus 320 ~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ig 388 (530)
T COG0488 320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKIG 388 (530)
T ss_pred eeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEEE
Confidence 35999999999987689999999999999999999999999999999999999999999998641 2599
Q ss_pred EEcCCC-CCC-chhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 537 VVPQDT-VLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 537 ~V~Q~~-~LF-~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
|.+|+. .++ +.|+.|++.-+.|+..+.++...+...+....- ..++ -..||||||-|+.+|+.++.+|
T Consensus 389 yf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~------~~~~----v~~LSGGEk~Rl~La~ll~~~p 458 (530)
T COG0488 389 YFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGED------QEKP----VGVLSGGEKARLLLAKLLLQPP 458 (530)
T ss_pred EEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHH------HhCc----hhhcCHhHHHHHHHHHHhccCC
Confidence 999988 444 349999998887776688888888777664322 2333 4589999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEe-cChHHHhhcc
Q 005205 615 PILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQ-GSHDDLLTKA 684 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~-Gth~eLl~~~ 684 (709)
.+|||||||..||.+|-..+.++|... .-|+|+|||+-..+.. |++|+++++ ++.+. |+|+|..+..
T Consensus 459 NvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~~ 527 (530)
T COG0488 459 NLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQK 527 (530)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHhh
Confidence 999999999999999999999999886 3599999999999987 899999999 88777 8888877643
No 368
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=2.3e-31 Score=274.80 Aligned_cols=194 Identities=24% Similarity=0.345 Sum_probs=141.5
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHh-----c-CCC----CCCCE-----------EEECCEeCCCCCHH--
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF-----R-SFD----THSGS-----------IRIDGQDICEVTLE-- 529 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~-----r-ly~----p~~G~-----------I~idG~di~~~~~~-- 529 (709)
..|+|+|++||.|+.++|.|.||||||||++-++ + ++. |..++ |.+|..||..-+..
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998653 2 222 33333 55565555332211
Q ss_pred --------Hhhc----------------ceEEEcCCCCC-CchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCC
Q 005205 530 --------SLRK----------------SIGVVPQDTVL-FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK 584 (709)
Q Consensus 530 --------~lR~----------------~i~~V~Q~~~L-F~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G 584 (709)
.+|+ .+.|..++... .+-|+.||+.|.......++.. +.++.+ |
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~---------~~L~~v--g 157 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKL---------QTLCDV--G 157 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHH---------HHHHHc--C
Confidence 1111 12333333332 3447777776653211112222 233333 4
Q ss_pred ccc-cccCCCCCCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh
Q 005205 585 YST-VVGERGLKLSGGEKQRVALARAFLKA---PPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ 659 (709)
Q Consensus 585 ~dT-~vGe~G~~LSGGQrQRiaIARAll~~---p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~ 659 (709)
++. .+++....||||||||++|||||+++ |+++||||||++||+.+.+.+.+.|+++. ++.|+|+|+|++..++.
T Consensus 158 L~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 158 LGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred CchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 444 46788899999999999999999996 79999999999999999999999998876 47999999999999999
Q ss_pred cCeEEEE------eCCEEEEecCh
Q 005205 660 CDEIIVL------ENGKVIEQGSH 677 (709)
Q Consensus 660 aD~Iivl------~~G~Ive~Gth 677 (709)
||+|++| ++|+|+++|++
T Consensus 238 aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 238 ADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999 89999999974
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=2.9e-30 Score=257.52 Aligned_cols=164 Identities=27% Similarity=0.353 Sum_probs=134.7
Q ss_pred eeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCC---------CEEEECCEeCCCCCHHHhhcceEEEcCCCCCCc
Q 005205 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS---------GSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN 546 (709)
Q Consensus 476 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~---------G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~ 546 (709)
+++++++++| +++|+||||||||||++.|.++..|.. |++.++|.++... ..+++|++|+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 5789999999 999999999999999999999986653 4688888876542 3467899999999988
Q ss_pred hhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCC
Q 005205 547 DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL----KAPPILLCDEA 622 (709)
Q Consensus 547 gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll----~~p~ILILDEa 622 (709)
|+. ..++++.++++. ++-.+ .....||||||||++||||+. ++|++++||||
T Consensus 89 --------~~~--~~~~~~~~~l~~----------~~~~~----~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 --------YSI--ISQGDVSEIIEA----------PGKKV----QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred --------eeE--EehhhHHHHHhC----------CCccc----cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 322 123445554443 22233 344679999999999999986 57799999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeC
Q 005205 623 TSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLEN 668 (709)
Q Consensus 623 TSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~ 668 (709)
|++||+++...+.+.|+++.++.|+|+|||++..++.||+++.+..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999999999998888999999999999999999998853
No 370
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=3.1e-30 Score=256.69 Aligned_cols=211 Identities=26% Similarity=0.431 Sum_probs=162.6
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEc-CCCCCC-chhHH
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP-QDTVLF-NDTIF 550 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~-Q~~~LF-~gTIr 550 (709)
++.+||||+||||++++++|++|+||||++|+|.|+..|++|.|.++|.+=.+ +.+++-+++++|. |...|. +--+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechhh
Confidence 58999999999999999999999999999999999999999999999987655 3344444555553 333321 11122
Q ss_pred HHHHcCC--CCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 005205 551 HNIRYGR--LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDS 628 (709)
Q Consensus 551 eNI~~g~--~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~ 628 (709)
|-+..-+ -++++++..+-. +++++=| +++..+-..-..||=|||-|..||-||+++|+||.|||||=.||.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~-----~~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERL-----DFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHH-----HHHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 2221110 024444443221 1222222 345555566689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhcccHHHHHH
Q 005205 629 TTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW 691 (709)
Q Consensus 629 ~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~ 691 (709)
.....|.+.|++.. +++||+..||.++-|. .||||+.+++|+++-.||-++|.++-|.|++++
T Consensus 190 ~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~~~ 255 (325)
T COG4586 190 NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFS 255 (325)
T ss_pred hHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCceEEE
Confidence 99999999998654 6789999999999765 599999999999999999999999877776554
No 371
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.9e-29 Score=233.67 Aligned_cols=226 Identities=27% Similarity=0.415 Sum_probs=176.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECC-----EeCCCCCHHH--
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG-----QDICEVTLES-- 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG-----~di~~~~~~~-- 530 (709)
-++++++|..|.+ ..--+|+||++-|||..||||+||||||||+++|.+-..|++|+|.++- .|+-.++.++
T Consensus 6 LL~V~~lsk~Yg~-~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR 84 (258)
T COG4107 6 LLSVSGLSKLYGP-GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84 (258)
T ss_pred ceeehhhhhhhCC-CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHH
Confidence 3788999999965 4568899999999999999999999999999999999999999999865 4455555444
Q ss_pred --hhcceEEEcCCCC--C-CchhHHHHH-----HcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHH
Q 005205 531 --LRKSIGVVPQDTV--L-FNDTIFHNI-----RYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (709)
Q Consensus 531 --lR~~i~~V~Q~~~--L-F~gTIreNI-----~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 600 (709)
+|.--|+|.|+|- | ..-|---|| +.|...+ -.|. +.+.+|+++.+-.. +.+.+.-..+|||.
T Consensus 85 ~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY--G~iR-----~~a~~WL~~VEI~~-~RiDD~PrtFSGGM 156 (258)
T COG4107 85 RLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY--GNIR-----AEAQDWLEEVEIDL-DRIDDLPRTFSGGM 156 (258)
T ss_pred HHhhhccceeecCccccceeeeccCCccchhHHhhhhhhh--hhHH-----HHHHHHHHhcccCc-ccccCcccccchHH
Confidence 3445699999993 0 111111122 1111111 1121 23446777655432 45677889999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhh-cCeEEEEeCCEEEEecCh
Q 005205 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSH 677 (709)
Q Consensus 601 rQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth 677 (709)
+||+-|||-|+..|+++.+||||-+||....+.+.+-++.+-. +-.+++|||.|...+- |||.+||++|+++|+|=-
T Consensus 157 qQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLT 236 (258)
T COG4107 157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLT 236 (258)
T ss_pred HHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccc
Confidence 9999999999999999999999999999999999999988764 4689999999999886 999999999999999988
Q ss_pred HHHhhc-ccHHHHHHH
Q 005205 678 DDLLTK-AGRYAQLWG 692 (709)
Q Consensus 678 ~eLl~~-~g~Y~~l~~ 692 (709)
+..+.. .-.|-+|.-
T Consensus 237 DrvLDDP~hPYTQLLV 252 (258)
T COG4107 237 DRVLDDPHHPYTQLLV 252 (258)
T ss_pred cccccCCCCchHHHHH
Confidence 888764 566877754
No 372
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.4e-30 Score=241.45 Aligned_cols=188 Identities=25% Similarity=0.429 Sum_probs=157.4
Q ss_pred EEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEc
Q 005205 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (709)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 539 (709)
+.+|++..- ++..++.++||++.+||.+-|+||+|||||||+++|+|+.+|++|+|+++|.+++.... +.++.+-|.-
T Consensus 4 ~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~-~~~~~l~yLG 81 (209)
T COG4133 4 EAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE-SYHQALLYLG 81 (209)
T ss_pred hhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh-hHHHHHHHhh
Confidence 445555432 45688999999999999999999999999999999999999999999999999987654 3477788887
Q ss_pred CCCCCC-chhHHHHHHcCCC---CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 540 QDTVLF-NDTIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 540 Q~~~LF-~gTIreNI~~g~~---~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
-.+-+= .-|+.||+.|++. ..+++.+++|+..+++.++ +.+| ++ +||-||+.|+||||-++..+|
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp------~~----~LSAGQqRRvAlArL~ls~~p 150 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP------VG----QLSAGQQRRVALARLWLSPAP 150 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc------hh----hcchhHHHHHHHHHHHcCCCC
Confidence 777664 4599999999853 2467999999999999874 3344 43 799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEecCchHHhhc
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSL-ANNRTSIFIAHRLTTAMQC 660 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l-~~~~TvIvIaHRlsti~~a 660 (709)
+.||||||+|||.+.++.+-.-+... .+|-.||..||....+..+
T Consensus 151 LWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~a 196 (209)
T COG4133 151 LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIASA 196 (209)
T ss_pred ceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCcc
Confidence 99999999999999998888777654 4678999999998766543
No 373
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.96 E-value=7.4e-30 Score=258.18 Aligned_cols=192 Identities=18% Similarity=0.171 Sum_probs=149.4
Q ss_pred eEEEEeEEEEecCCcccceeeeeEee-CCcEEEEEcCCCccHHHHHHHHh-cCCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVP-AGKSVAIVGTSGSGKSTILRLLF-RSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~-~Ge~vaIVG~SGsGKSTL~~LL~-rly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
.|+++|+. +|... ++|+|+.. +|++++|+|+||||||||+++|. .+|.+..+....+ .....+.....+..|
T Consensus 5 ~i~l~nf~-~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v 78 (213)
T cd03279 5 KLELKNFG-PFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEV 78 (213)
T ss_pred EEEEECCc-CcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEE
Confidence 68999988 77532 56777654 59999999999999999999999 5787777777654 233445556677889
Q ss_pred EEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCC-ccccccCCCCCCChHHHHHHHHHHHhcc--
Q 005205 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK-YSTVVGERGLKLSGGEKQRVALARAFLK-- 612 (709)
Q Consensus 536 ~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G-~dT~vGe~G~~LSGGQrQRiaIARAll~-- 612 (709)
++++|++.. ...+++++ ..+.++..+... ++.| +++.+...+.+||||||||++||||++.
T Consensus 79 ~~~f~~~~~----~~~~~r~~--gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p 142 (213)
T cd03279 79 SFTFQLGGK----KYRVERSR--GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALALSE 142 (213)
T ss_pred EEEEEECCe----EEEEEEec--CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHH
Confidence 999999833 22333343 455555544321 2233 5666677788999999999999999974
Q ss_pred --------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchHHhh-cCeEEEEeCCEE
Q 005205 613 --------APPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQ-CDEIIVLENGKV 671 (709)
Q Consensus 613 --------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRlsti~~-aD~Iivl~~G~I 671 (709)
+|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|-+
T Consensus 143 ~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 143 VLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6789999999999999999999999988865 7899999999997765 799999998853
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=1.9e-29 Score=260.51 Aligned_cols=191 Identities=25% Similarity=0.330 Sum_probs=143.0
Q ss_pred eEEEEeEEEE-ecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHh----------------cCCCCCCC------
Q 005205 458 SIQFDNVHFS-YLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF----------------RSFDTHSG------ 514 (709)
Q Consensus 458 ~I~f~nVsF~-Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~----------------rly~p~~G------ 514 (709)
.|+++| |+ |. +..++++++ |++++|+||||||||||+++|+ ++..+.+|
T Consensus 3 ~i~~~n--fksy~-~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 3 QVIIQG--FKSYK-DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEEeC--ccCcc-cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 466665 43 53 456777876 8899999999999999999998 44555566
Q ss_pred --EEEECCEeCCCC---CHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHH--HhCCCCcc-
Q 005205 515 --SIRIDGQDICEV---TLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTI--MNFPAKYS- 586 (709)
Q Consensus 515 --~I~idG~di~~~---~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I--~~Lp~G~d- 586 (709)
+|.+++.+-... ....+++.+++++|++.++. ..++.+|++.+++..++.+.- ..+|+|..
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~-----------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~ 143 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK-----------KNVTKNDVMNLLESAGFSRSNPYYIVPQGKIN 143 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC-----------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCchH
Confidence 666665322111 22346677888888776543 235667777777776654310 01233322
Q ss_pred ------ccccCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchH
Q 005205 587 ------TVVGERGLKLSGGEKQRVALARAFL----KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTT 656 (709)
Q Consensus 587 ------T~vGe~G~~LSGGQrQRiaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlst 656 (709)
....+.+..||||||||++||||++ ++|+++||||||++||+.+.+.+.+.|+++.+++|+|+++|+...
T Consensus 144 ~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~ 223 (243)
T cd03272 144 SLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPEL 223 (243)
T ss_pred HhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 2235678899999999999999996 468999999999999999999999999998778899999999999
Q ss_pred HhhcCeEEEEe
Q 005205 657 AMQCDEIIVLE 667 (709)
Q Consensus 657 i~~aD~Iivl~ 667 (709)
.+.||+|++|+
T Consensus 224 ~~~~d~i~~l~ 234 (243)
T cd03272 224 LEVADKFYGVK 234 (243)
T ss_pred HhhCCEEEEEE
Confidence 99999999985
No 375
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5.7e-28 Score=224.35 Aligned_cols=201 Identities=29% Similarity=0.430 Sum_probs=147.0
Q ss_pred eEEEEeEEEEec----CC--cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECC----EeCCCCC
Q 005205 458 SIQFDNVHFSYL----TE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG----QDICEVT 527 (709)
Q Consensus 458 ~I~f~nVsF~Y~----~~--~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG----~di~~~~ 527 (709)
.+..+||+.++. ++ -||++|+||+++.||+|++=||||||||||++.|-+-|.|++|+|++.- +|+-.-.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 477888876663 22 3899999999999999999999999999999999999999999999843 3444444
Q ss_pred H----HHhhcceEEEcCCCCCCc-----hhHHHHH-HcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCC
Q 005205 528 L----ESLRKSIGVVPQDTVLFN-----DTIFHNI-RYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLS 597 (709)
Q Consensus 528 ~----~~lR~~i~~V~Q~~~LF~-----gTIreNI-~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LS 597 (709)
+ +--|+.||||+|---... +-+.|-+ ..|- +.+.-.+.++ .+.. =.++|+.+... --.++|
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv---~~~~a~~~a~--~Ll~-rLnlperLW~L---aPaTFS 154 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGV---PREVARAKAA--DLLT-RLNLPERLWSL---APATFS 154 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCC---CHHHHHHHHH--HHHH-HcCCCHHHhcC---CCcccC
Confidence 3 334667999999322111 1223332 2332 2222221111 1111 12345544432 246899
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEe
Q 005205 598 GGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLE 667 (709)
Q Consensus 598 GGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~ 667 (709)
|||+||+.|||.++-|-|||+|||||++||+.+.+.+.+.|++.+ +|+.+|=|=|+-+.=+. |||++-|.
T Consensus 155 GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 155 GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 999999999999999999999999999999999999999998765 68889999999876554 89998774
No 376
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1.8e-27 Score=246.97 Aligned_cols=185 Identities=22% Similarity=0.268 Sum_probs=139.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCC-CCEEEECCE-eCCCCC--HHHhhcceEEEcCCCCC---------C-chhHH
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQ-DICEVT--LESLRKSIGVVPQDTVL---------F-NDTIF 550 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly~p~-~G~I~idG~-di~~~~--~~~lR~~i~~V~Q~~~L---------F-~gTIr 550 (709)
...++||||||||||||++.|+++..|+ .|+++..|. |+-... ....+..|++++|++-. . .-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999998886 568998886 532211 11234589999999621 1 45788
Q ss_pred HHHHcCCC--------CCCHHHHHHHHHHHchH----HH------HHhCCCCccccccCCCCCCChHHHHHHHHHHHhc-
Q 005205 551 HNIRYGRL--------SATEEEVYDAARRAAIH----DT------IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL- 611 (709)
Q Consensus 551 eNI~~g~~--------~~s~~ei~~A~~~a~l~----~~------I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll- 611 (709)
+||.++.. ....+++.++++.+++. .| |.++=+. ..........||||||||++|||||.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 87755421 13456777777777763 00 0000000 02234556789999999999999997
Q ss_pred ---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEe--CCE
Q 005205 612 ---KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLE--NGK 670 (709)
Q Consensus 612 ---~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~--~G~ 670 (709)
.+|+++||||||++||+++.+.+.+.|+++.++.|+|+||||.+.++.||+|+-+. +|.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~ 247 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTRFVDGT 247 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEEeeCCE
Confidence 68899999999999999999999999999888899999999999999999998764 554
No 377
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.94 E-value=9.5e-27 Score=279.12 Aligned_cols=220 Identities=24% Similarity=0.419 Sum_probs=189.0
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC-CHHHhhcce
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV-TLESLRKSI 535 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~-~~~~lR~~i 535 (709)
..+..+|++..|+..+.+.+++|+.+++||+.++-|++||||||++++|.|...|++|++.++|.++..- +....|+++
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 3688999999998544499999999999999999999999999999999999999999999999999764 455699999
Q ss_pred EEEcCCCCCCch-hHHHHHHcCC--CCCCHH----HHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 536 GVVPQDTVLFND-TIFHNIRYGR--LSATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 536 ~~V~Q~~~LF~g-TIreNI~~g~--~~~s~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
||+||+..|+.. |.||.+.+.. .+.... .+.+.++..++.+.. |++ -.++|||+|.||++|-
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~-------~~~----~~~ySgG~kRkLs~ai 711 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYA-------NKQ----VRTYSGGNKRRLSFAI 711 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhh-------ccc----hhhCCCcchhhHHHHH
Confidence 999999999876 9999996542 122333 345555555555543 444 3589999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCC-eEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhcccH
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR-TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTKAGR 686 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~-TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~~g~ 686 (709)
|++.+|++++|||||+++||.+.+.+.+.++++.++. -+|+.||-++..+. |||+..|.+|++...|+.++|-.+-|.
T Consensus 712 alig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~ 791 (885)
T KOG0059|consen 712 ALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGS 791 (885)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcCC
Confidence 9999999999999999999999999999999987754 99999999999887 999999999999999999999877555
Q ss_pred H
Q 005205 687 Y 687 (709)
Q Consensus 687 Y 687 (709)
+
T Consensus 792 g 792 (885)
T KOG0059|consen 792 G 792 (885)
T ss_pred c
Confidence 4
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=4.5e-28 Score=244.41 Aligned_cols=184 Identities=22% Similarity=0.272 Sum_probs=140.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhh-cceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLR-KSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR-~~i~ 536 (709)
.|+++|.- +|. +..+++++++ ++++|+||+||||||++++|. +++|.+.. ..| ++++
T Consensus 5 ~l~l~nfk-~~~-~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~i~ 62 (212)
T cd03274 5 KLVLENFK-SYA-GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKKLS 62 (212)
T ss_pred EEEEECcc-cCC-CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----HhhhhhHH
Confidence 57888865 674 5679999988 899999999999999999997 34554432 333 5799
Q ss_pred EEcCCCCCCch-hHHHHHHcCCCCCCHHHH-----HHHH-----HHHchHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 005205 537 VVPQDTVLFND-TIFHNIRYGRLSATEEEV-----YDAA-----RRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~~~~s~~ei-----~~A~-----~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRia 605 (709)
+++|+..++.. |.++++.+.......+.+ .... ....+ ..+.+||++.++.++ .||+|||||++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~-~~~~~L~~~~~~~~~----~lS~G~~~r~~ 137 (212)
T cd03274 63 DLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEV-EQIAQMPKKSWKNIS----NLSGGEKTLSS 137 (212)
T ss_pred HHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcE-EEeeccccccccchh----hcCHHHHHHHH
Confidence 99999887665 777777655321110000 0000 00111 135567888888654 79999999999
Q ss_pred HHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeC
Q 005205 606 LARAFL----KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLEN 668 (709)
Q Consensus 606 IARAll----~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~ 668 (709)
||||++ ++|++++|||||++||+.+.+.+.+.|+++.++.|+|+|||+....+.||+|++|..
T Consensus 138 la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 138 LALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 999996 358999999999999999999999999999888999999999999999999999964
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=6.1e-27 Score=234.97 Aligned_cols=163 Identities=23% Similarity=0.242 Sum_probs=132.0
Q ss_pred eeeEeeCCcEEEEEcCCCccHHHHHHHHh----cCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCC-----CCCc-h
Q 005205 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLF----RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT-----VLFN-D 547 (709)
Q Consensus 478 isl~I~~Ge~vaIVG~SGsGKSTL~~LL~----rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~-----~LF~-g 547 (709)
.++++.+| +++|+||||||||||++.|. |.-.|..|.+.-+.. .+.....+..|++++|++ .++. -
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~---~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPK---LIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHH---HHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34567777 99999999999999999984 888888887762222 222345677899999998 4433 2
Q ss_pred hHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH------HHHHHHhccCCCEEEEeC
Q 005205 548 TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR------VALARAFLKAPPILLCDE 621 (709)
Q Consensus 548 TIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR------iaIARAll~~p~ILILDE 621 (709)
|+.||+.++. ++++.+.+ .+....||+||+|| ++||||+..+|++++|||
T Consensus 92 ~~~~~~~~~~----~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 92 AILENVIFCH----QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred hHhhceeeec----hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 9999998752 34443222 44567999999996 799999999999999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHhcC--CCeEEEEecCchHHhhcCeEEEEeC
Q 005205 622 ATSALDSTTEA-EILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLEN 668 (709)
Q Consensus 622 aTSaLD~~tE~-~I~~~L~~l~~--~~TvIvIaHRlsti~~aD~Iivl~~ 668 (709)
||++||+++.. .+.+.|+++.+ ++|+|+|||.+..+..||+|++|++
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999999999 99999988765 7899999999999999999999965
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=3.3e-26 Score=281.61 Aligned_cols=213 Identities=22% Similarity=0.358 Sum_probs=157.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHH---------HHhcCCCCCCC--------EEEECC
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR---------LLFRSFDTHSG--------SIRIDG 520 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~---------LL~rly~p~~G--------~I~idG 520 (709)
.|+++|++. ..|+|+||+|++||+++|+|+||||||||++ +|.|...|..+ -|.||-
T Consensus 600 ~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQ 673 (1809)
T PRK00635 600 TLTLSKATK------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITR 673 (1809)
T ss_pred eEEEecccc------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecC
Confidence 588998862 3799999999999999999999999999999 56664333222 245555
Q ss_pred EeCCCCCH----------HHhhc---------c-----eEEEcCC------------------C----------------
Q 005205 521 QDICEVTL----------ESLRK---------S-----IGVVPQD------------------T---------------- 542 (709)
Q Consensus 521 ~di~~~~~----------~~lR~---------~-----i~~V~Q~------------------~---------------- 542 (709)
.++..-+. +++|+ . ..+.+|. +
T Consensus 674 spigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~ 753 (1809)
T PRK00635 674 DLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLP 753 (1809)
T ss_pred CCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCH
Confidence 54432211 13441 1 1122231 1
Q ss_pred ----CCCc-hhHHHHHHcCCCCC-----CHHHHHHHHHHHchHHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHHhc
Q 005205 543 ----VLFN-DTIFHNIRYGRLSA-----TEEEVYDAARRAAIHDTIMNFPAKYSTV-VGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 543 ----~LF~-gTIreNI~~g~~~~-----s~~ei~~A~~~a~l~~~I~~Lp~G~dT~-vGe~G~~LSGGQrQRiaIARAll 611 (709)
..+. -||.||+.++..++ +.+++.+.++ .+..+ |++.. .++...+||||||||++|||||+
T Consensus 754 e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAraL~ 825 (1809)
T PRK00635 754 QVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYELL 825 (1809)
T ss_pred HHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHHHHh
Confidence 1333 38999998874322 1233333332 23322 56654 68888999999999999999998
Q ss_pred ---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEEe------CCEEEEecChHHHh
Q 005205 612 ---KAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLE------NGKVIEQGSHDDLL 681 (709)
Q Consensus 612 ---~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl~------~G~Ive~Gth~eLl 681 (709)
++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|+|++..++.||+|++|+ +|++++.|++++++
T Consensus 826 ~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 826 APSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred hcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 6999999999999999999999999998875 5789999999999999999999996 89999999999998
Q ss_pred hcc
Q 005205 682 TKA 684 (709)
Q Consensus 682 ~~~ 684 (709)
...
T Consensus 906 ~~~ 908 (1809)
T PRK00635 906 HLH 908 (1809)
T ss_pred hcc
Confidence 643
No 381
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.94 E-value=3e-26 Score=271.82 Aligned_cols=104 Identities=29% Similarity=0.461 Sum_probs=94.4
Q ss_pred Cccc-cccCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh
Q 005205 584 KYST-VVGERGLKLSGGEKQRVALARAFLKAP---PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM 658 (709)
Q Consensus 584 G~dT-~vGe~G~~LSGGQrQRiaIARAll~~p---~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~ 658 (709)
|++. .+++....||||||||++|||||+++| +++||||||++||+++.+.+.+.|+++. +++|+|+|+|++..++
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4443 368888999999999999999999999 9999999999999999999999998875 5799999999999999
Q ss_pred hcCeEEEE------eCCEEEEecChHHHhhcccHH
Q 005205 659 QCDEIIVL------ENGKVIEQGSHDDLLTKAGRY 687 (709)
Q Consensus 659 ~aD~Iivl------~~G~Ive~Gth~eLl~~~g~Y 687 (709)
.||+|++| ++|+|++.|+++|+.+....|
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~ 932 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY 932 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccH
Confidence 99999999 799999999999999765444
No 382
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.7e-25 Score=243.47 Aligned_cols=215 Identities=27% Similarity=0.431 Sum_probs=176.0
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH-HhhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE-SLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~-~lR~~i~ 536 (709)
-++++|++.. ..++|+||++.+||+++|.|--|||+|=+++.|.|..++.+|+|.+||++++--++. ..+.-|+
T Consensus 263 ~l~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~ 337 (500)
T COG1129 263 VLEVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIA 337 (500)
T ss_pred EEEEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCE
Confidence 4778887753 258899999999999999999999999999999999999999999999988777754 7888899
Q ss_pred EEcCCC----CCCchhHHHHHHcCCC-CCCHH-HHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 537 VVPQDT----VLFNDTIFHNIRYGRL-SATEE-EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 537 ~V~Q~~----~LF~gTIreNI~~g~~-~~s~~-ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|||-|- .+...||++||.+..- ..+.. -+.++.+.+-+.+++.+|.-.-..+ ...-.+||||-+|++.|||.|
T Consensus 338 ~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~-~~~v~~LSGGNQQKVvlarwL 416 (500)
T COG1129 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSP-EQPIGTLSGGNQQKVVLARWL 416 (500)
T ss_pred eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCc-cchhhcCCchhhhhHHHHHHH
Confidence 999754 3557799999987621 11111 2445666667778888875322211 133458999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChH
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHD 678 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~ 678 (709)
..+|+||||||||-++|--+.+.|.+-|+++. +|+++|+||-.+..+. .||||+||.+|+|+..=+.+
T Consensus 417 ~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 417 ATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred hcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 99999999999999999999999999999885 6799999999988766 79999999999999743333
No 383
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.93 E-value=2.1e-26 Score=247.88 Aligned_cols=194 Identities=26% Similarity=0.386 Sum_probs=165.6
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
.-|.|.||+|+|+++..++++++|-|.+++++|+|||+|+|||||+||+.|...|+.|.|.-.-+ ..++
T Consensus 388 pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred CeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 36999999999987778999999999999999999999999999999999999999999875432 2344
Q ss_pred EEcC---CCCCCchhHHHHHHcCCC-CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 005205 537 VVPQ---DTVLFNDTIFHNIRYGRL-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (709)
Q Consensus 537 ~V~Q---~~~LF~gTIreNI~~g~~-~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~ 612 (709)
+-.| +...++.|.-||+.---+ .-..+++...+...|+....+..| + .+||+|||-||++||.+++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p------~----~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP------M----SQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc------h----hhcccccchhHHHHHHHhc
Confidence 4444 445678888999854333 356788888999998876555444 2 4899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEE
Q 005205 613 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIE 673 (709)
Q Consensus 613 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive 673 (709)
.|.||||||||++||.+|-....++|++. .-++|+|+|..-.|.+ |++|.+.+||.+..
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceee
Confidence 99999999999999999999999999885 4589999999999987 89999999999864
No 384
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=1.8e-26 Score=215.30 Aligned_cols=208 Identities=29% Similarity=0.393 Sum_probs=175.5
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
++++||+-+- -|-.+|..+.+||..=+|||+|||||||+.-++|+. |-+|+|.++|.|++.++..+|-++=+|.
T Consensus 4 ~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYL 77 (248)
T COG4138 4 MQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYL 77 (248)
T ss_pred eeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHH
Confidence 5677776432 355689999999999999999999999999999976 6899999999999999999999999999
Q ss_pred cCC-CCCCchhHHHHHHcCCCCCC-HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc----
Q 005205 539 PQD-TVLFNDTIFHNIRYGRLSAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK---- 612 (709)
Q Consensus 539 ~Q~-~~LF~gTIreNI~~g~~~~s-~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~---- 612 (709)
.|+ ...|...+..-+++..|+-+ -+++.+.|+.. ++|-.+|..-..|||||.||+-+|-.++.
T Consensus 78 sQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L-----------~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd 146 (248)
T COG4138 78 SQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPD 146 (248)
T ss_pred hhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhh-----------cccchhhhhhhhcCcccceeeEEeEEEEEecCC
Confidence 874 46899999999999888521 12333333333 34555666778999999999999988874
Q ss_pred -C--CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCch-HHhhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 613 -A--PPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLT-TAMQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 613 -~--p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRls-ti~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
| .++|+||||-+.||..-+..+..-|.+++ .|.|+|+-.|+|+ |+++||++..+..|++...|.-+|.+..
T Consensus 147 ~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 147 ANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 3 36999999999999999998888887765 6899999999996 9999999999999999999999999864
No 385
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=6.3e-26 Score=266.13 Aligned_cols=197 Identities=27% Similarity=0.390 Sum_probs=167.0
Q ss_pred cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC--CCCCEEEECCEeCCCCCHHHhhcceEEEcCCC-CCCchh
Q 005205 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--THSGSIRIDGQDICEVTLESLRKSIGVVPQDT-VLFNDT 548 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~--p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~-~LF~gT 548 (709)
+.+|+||+=-++||..+||+|+||||||||++.|++=-. .-+|+|+|||.+..+ +..++.+|||.|+. ++=.-|
T Consensus 804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred eEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcccc
Confidence 579999999999999999999999999999999998643 257999999998876 78999999999955 565679
Q ss_pred HHHHHHcCC-----CCCCHHHH----HHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC-CEEE
Q 005205 549 IFHNIRYGR-----LSATEEEV----YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP-PILL 618 (709)
Q Consensus 549 IreNI~~g~-----~~~s~~ei----~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p-~ILI 618 (709)
|||-+.|.. .+.+++|- +++.+..++.+. =|..||.-|..||..||.|+.||=-|+.|| .||.
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilF 953 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSILF 953 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeEE
Confidence 999998862 24555443 344444444332 477899999999999999999999999999 8999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchH--HhhcCeEEEEe-CCEEEEecChH
Q 005205 619 CDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTT--AMQCDEIIVLE-NGKVIEQGSHD 678 (709)
Q Consensus 619 LDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlst--i~~aD~Iivl~-~G~Ive~Gth~ 678 (709)
||||||+||+++...|.+.++++. .|+|+++.=|.+|. .+..|+++.|+ +|+.|-.|+..
T Consensus 954 LDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 954 LDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred ecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 999999999999999999999885 78999999999985 67899999997 58899887643
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=1.4e-24 Score=257.24 Aligned_cols=97 Identities=29% Similarity=0.481 Sum_probs=89.4
Q ss_pred Cccc-cccCCCCCCChHHHHHHHHHHHhcc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh
Q 005205 584 KYST-VVGERGLKLSGGEKQRVALARAFLK---APPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM 658 (709)
Q Consensus 584 G~dT-~vGe~G~~LSGGQrQRiaIARAll~---~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~ 658 (709)
|++. .+++...+||||||||++|||+|.+ +|+++||||||++||+.+.+.+.+.|+++. ++.|+|+|+|++..++
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5544 4688889999999999999999997 599999999999999999999999999875 5799999999999999
Q ss_pred hcCeEEEE------eCCEEEEecChHHH
Q 005205 659 QCDEIIVL------ENGKVIEQGSHDDL 680 (709)
Q Consensus 659 ~aD~Iivl------~~G~Ive~Gth~eL 680 (709)
.||+|++| ++|+|++.|+++|+
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999999886
No 387
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.92 E-value=1.7e-25 Score=231.46 Aligned_cols=183 Identities=21% Similarity=0.221 Sum_probs=134.8
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEe-C-C-----CCCHHHhhcceEEEcCCC--CCCchhHHHHH-H-
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD-I-C-----EVTLESLRKSIGVVPQDT--VLFNDTIFHNI-R- 554 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~d-i-~-----~~~~~~lR~~i~~V~Q~~--~LF~gTIreNI-~- 554 (709)
..++|+||+|||||||+..|.++..+..|+++.++.+ + . ..+.....-.+.+..|++ .++..+++++- .
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999988888888765421 1 1 111223333455555553 34555554442 1
Q ss_pred -cCCCCCCHHHHHHHHHHHchHHHHHh--CCCCccccccCC---------CCCCChHHHHHHHHHHHhcc----CCCEEE
Q 005205 555 -YGRLSATEEEVYDAARRAAIHDTIMN--FPAKYSTVVGER---------GLKLSGGEKQRVALARAFLK----APPILL 618 (709)
Q Consensus 555 -~g~~~~s~~ei~~A~~~a~l~~~I~~--Lp~G~dT~vGe~---------G~~LSGGQrQRiaIARAll~----~p~ILI 618 (709)
+.....+.+++.+.++..+++.+... +|+|-=+.+.+. ...||||||||++||||++. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 22334678888889899888533211 234443334332 26899999999999999975 489999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchHHhhcCeEEEEeC
Q 005205 619 CDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQCDEIIVLEN 668 (709)
Q Consensus 619 LDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRlsti~~aD~Iivl~~ 668 (709)
|||||++||+.+...+.+.|+++.+ +.|+|+|||+.+.++.||+|++|.+
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999998865 7899999999999999999999864
No 388
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.91 E-value=1.8e-23 Score=224.57 Aligned_cols=214 Identities=23% Similarity=0.394 Sum_probs=177.2
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeC-CCCCHHHhhcc-
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI-CEVTLESLRKS- 534 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di-~~~~~~~lR~~- 534 (709)
.-++++|++..-+.+.+.+++|||++++||++||.|-+|-|-+-|+.+|+|+..|.+|+|+++|+|+ ...+...+|+.
T Consensus 256 ~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G 335 (501)
T COG3845 256 VVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLG 335 (501)
T ss_pred eEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcC
Confidence 3589999998644445789999999999999999999999999999999999999999999999997 67788887765
Q ss_pred eEEEcCCCC----CCchhHHHHHHcCCCC---------CCHHHHHHHHHHHchHHHHHhC---CCCccccccCCCCCCCh
Q 005205 535 IGVVPQDTV----LFNDTIFHNIRYGRLS---------ATEEEVYDAARRAAIHDTIMNF---PAKYSTVVGERGLKLSG 598 (709)
Q Consensus 535 i~~V~Q~~~----LF~gTIreNI~~g~~~---------~s~~ei~~A~~~a~l~~~I~~L---p~G~dT~vGe~G~~LSG 598 (709)
+||||.|.+ ..+-|+.||+.++.-. .+..++.+.++ +.|+++ +.|-+++ -.+|||
T Consensus 336 ~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~~~~~~----a~~LSG 406 (501)
T COG3845 336 LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAPSPDAP----ARSLSG 406 (501)
T ss_pred CccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCCCCCcc----hhhcCC
Confidence 999999884 6778999999877432 22344433333 334332 2333333 358999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecC
Q 005205 599 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGS 676 (709)
Q Consensus 599 GQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gt 676 (709)
|+.||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +|+.+++|+-.|..+. -||||.||-+|+|+...+
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccc
Confidence 99999999999999999999999999999999999999987654 6899999999998765 599999999999998777
Q ss_pred hHH
Q 005205 677 HDD 679 (709)
Q Consensus 677 h~e 679 (709)
.+|
T Consensus 487 ~~~ 489 (501)
T COG3845 487 PEE 489 (501)
T ss_pred ccc
Confidence 665
No 389
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.91 E-value=4.1e-21 Score=197.84 Aligned_cols=273 Identities=21% Similarity=0.300 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 128 ITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKVA 207 (709)
Q Consensus 128 ~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (709)
++++++.++..+..+..|++++.++|.+........ .....+. ...+.. . .+...+.....+...+.+
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~---~~~~~~-~---~~~~~~~~~~~~~~~~~~ 69 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNN-----SSLISLA---FLLIAI-F---LLIFLFSYIYFYLSSRIS 69 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHH-----HHHHHHH---HHHHHH-H---HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchh-----hHHHHHH---HHHHHH-H---HHHHHHHHHHHHHHHHHH
Confidence 345556666777888899999999998543211100 1111110 011111 1 111233444455567899
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 005205 208 LRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITS 287 (709)
Q Consensus 208 ~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~i~~ 287 (709)
.++..++|.++++|++++|..+|+++++|++.+++++|.+.++..+......++..++.++. ..++++.++|.++++.+
T Consensus 70 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~l~~l 148 (275)
T PF00664_consen 70 QRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIF-SLILLFFISWKLALILL 148 (275)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhh-hhhcccccccccccccc
Confidence 99999999999999999999999999999999999999999988877666666655544333 33445566888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 288 LSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLN 367 (709)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (709)
+.++++.++.....+..++..++..+..++..+.+.|.++|+++||+|+.|+++.++|++..++..+...+..+......
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (275)
T PF00664_consen 149 IILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLS 228 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777778888888899999999999999999999999999999999999999888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHH
Q 005205 368 FGQNVIFSAALSTAMVLCSHG-ILSGEMTVGDLVMVNGLLFQLSLPL 413 (709)
Q Consensus 368 ~~~~~~~~~~~~~~l~~g~~~-v~~g~ltvG~l~a~~~~~~~l~~pl 413 (709)
.....+.....++++++|+++ +.+|.+|+|+++++..+...+..|+
T Consensus 229 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 229 SISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 766666666677777889999 9999999999999999999999985
No 390
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.89 E-value=1.1e-23 Score=216.27 Aligned_cols=197 Identities=20% Similarity=0.334 Sum_probs=143.1
Q ss_pred eEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEE--EECCEeCCCCCHHHhhcce--EEEcCCCCCCchhHHHHHHc
Q 005205 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI--RIDGQDICEVTLESLRKSI--GVVPQDTVLFNDTIFHNIRY 555 (709)
Q Consensus 480 l~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I--~idG~di~~~~~~~lR~~i--~~V~Q~~~LF~gTIreNI~~ 555 (709)
+.|.+||+++|+|++|+|||||++.+.+..+...+++ .+-...-+..+..++.+.+ .+|-.+. +.+-...+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHHH
Confidence 5789999999999999999999999999888764432 3322222224555555554 1111100 0011111111
Q ss_pred CCCCCCHHHHHHHHHHH---c-----hHHHHHhCCCCccccccCCCCCCChHH--------HHHHHHHHHhccCCCEEEE
Q 005205 556 GRLSATEEEVYDAARRA---A-----IHDTIMNFPAKYSTVVGERGLKLSGGE--------KQRVALARAFLKAPPILLC 619 (709)
Q Consensus 556 g~~~~s~~ei~~A~~~a---~-----l~~~I~~Lp~G~dT~vGe~G~~LSGGQ--------rQRiaIARAll~~p~ILIL 619 (709)
. ..+.+.++.- | +-|-+.++|++|++.+|+.|..+|||| |||+++||+++++++|.+|
T Consensus 88 ~------~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l 161 (249)
T cd01128 88 A------EMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII 161 (249)
T ss_pred H------HHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe
Confidence 0 0111111111 1 224578999999999999999999999 9999999999999999999
Q ss_pred eCCCCCCCHHHHHH-HHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHHHHhh
Q 005205 620 DEATSALDSTTEAE-ILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 694 (709)
Q Consensus 620 DEaTSaLD~~tE~~-I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q 694 (709)
||+++|+.+|.. ++ +.++. .++|.|+++|||++..++|.|.||+.|++ |++|+..++.|+.++..+
T Consensus 162 --~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~~~r 229 (249)
T cd01128 162 --ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMWLLR 229 (249)
T ss_pred --eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHHHHH
Confidence 999999887765 44 34443 67999999999999999999999999998 889998899998887655
No 391
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.9e-22 Score=216.36 Aligned_cols=207 Identities=26% Similarity=0.397 Sum_probs=169.9
Q ss_pred ceEEEEeEEEEecCCc-ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 457 GSIQFDNVHFSYLTER-KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~-~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
..+++.+|+|.|++++ +.+.+++++++.-+++++||++|+||||++|++.+-..|..|.+-+.+ |.+|
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri 429 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI 429 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence 4699999999999776 789999999999999999999999999999999999999999998876 6789
Q ss_pred EEEcCCCCCC-chhHHH--HHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCC-CCCChHHHHHHHHHHHhc
Q 005205 536 GVVPQDTVLF-NDTIFH--NIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG-LKLSGGEKQRVALARAFL 611 (709)
Q Consensus 536 ~~V~Q~~~LF-~gTIre--NI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G-~~LSGGQrQRiaIARAll 611 (709)
+|-.|...=| +-.+.+ -..=-.|.-++||+++.|...|+...+.. .. ..||||||=|+++|-...
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~-----------~si~~LSGGQKsrvafA~~~~ 498 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELAL-----------QSIASLSGGQKSRVAFAACTW 498 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhh-----------ccccccCCcchhHHHHHHHhc
Confidence 9998865433 222211 11111355689999999987776554433 33 579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEEEe-cChHHHhhcccHHHH
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQ-GSHDDLLTKAGRYAQ 689 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~-Gth~eLl~~~g~Y~~ 689 (709)
.+|.+|||||||..||.++-..+-++|++.. --||+|||..+.+.. |+.++|.++|+|.-. |+ --.|++
T Consensus 499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~-------~~~yKk 569 (582)
T KOG0062|consen 499 NNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGG-------IDKYKK 569 (582)
T ss_pred CCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEeeecc-------HHHHHH
Confidence 9999999999999999999999999999863 369999999999987 999999999999741 11 123777
Q ss_pred HHHhh
Q 005205 690 LWGQQ 694 (709)
Q Consensus 690 l~~~q 694 (709)
+...|
T Consensus 570 l~~~e 574 (582)
T KOG0062|consen 570 LLGAE 574 (582)
T ss_pred HHHHH
Confidence 76655
No 392
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=1.1e-22 Score=203.12 Aligned_cols=169 Identities=18% Similarity=0.151 Sum_probs=120.3
Q ss_pred eeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCE---eCCCCCHHHhhcceEEEcCCCCCCchhHHHH
Q 005205 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ---DICEVTLESLRKSIGVVPQDTVLFNDTIFHN 552 (709)
Q Consensus 476 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~---di~~~~~~~lR~~i~~V~Q~~~LF~gTIreN 552 (709)
+++++++.+| ..+|+||+|||||||+..|.-.+..... ....|. ++-.. ..-...|.+++|+.-++. |
T Consensus 13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~--~~~~~~i~~~~~~~~~~~-----~ 83 (198)
T cd03276 13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKD--GESSAKITVTLKNQGLDA-----N 83 (198)
T ss_pred eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhC--CCCeEEEEEEEEcCCccC-----C
Confidence 4677777777 7799999999999999988743322221 001122 11111 122456888998877665 2
Q ss_pred HHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh----ccCCCEEEEeCCCCCCCH
Q 005205 553 IRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF----LKAPPILLCDEATSALDS 628 (709)
Q Consensus 553 I~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl----l~~p~ILILDEaTSaLD~ 628 (709)
+ .++.+ .+.+.+++.. .+-. .+...+||||||||++||||+ +.+|+++||||||++||.
T Consensus 84 -----~-~~~~~------~~~~~~~l~~-~~~~----~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~ 146 (198)
T cd03276 84 -----P-LCVLS------QDMARSFLTS-NKAA----VRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDM 146 (198)
T ss_pred -----c-CCHHH------HHHHHHHhcc-cccc----CCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCH
Confidence 1 12211 2234444544 2223 334568999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHHHhcC----CCeEEEEecCchHHhhcCeEEEEeCCE
Q 005205 629 TTEAEILNALKSLAN----NRTSIFIAHRLTTAMQCDEIIVLENGK 670 (709)
Q Consensus 629 ~tE~~I~~~L~~l~~----~~TvIvIaHRlsti~~aD~Iivl~~G~ 670 (709)
.+...+.+.|++..+ ++|+|+++|++..+...|+|-||..|+
T Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 147 VNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 999999999988643 358999999999999999999998754
No 393
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=6.3e-22 Score=207.04 Aligned_cols=193 Identities=27% Similarity=0.398 Sum_probs=147.8
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
.-+-+.||+|+||+.+|.+++++|-|.--..+|||||+|.|||||++||.|-.+|++|+.+=+- |=+||
T Consensus 585 PvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~iG 653 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRIG 653 (807)
T ss_pred CeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeeee
Confidence 3577999999999889999999999999999999999999999999999999999999876543 44688
Q ss_pred EEcCCCC---CCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 537 VVPQDTV---LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 537 ~V~Q~~~---LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
+..|..- --..|-.|-+.-+- +.+-++-+.++-..|+.. --+|. .-..||||||-|+++|---++.
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~s-------HAHTi---kikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLAS-------HAHTI---KIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhh-------ccceE---eeeecCCcchHHHHHHHHhcCC
Confidence 8777541 12234445442111 133444445544444322 12222 2468999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCe-EEEEeCCEEEE
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDE-IIVLENGKVIE 673 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~-Iivl~~G~Ive 673 (709)
|+||||||||.+||-++-..+-++|++. +--||+|+|.-..|...|. .+|+++-.|-|
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~e 781 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDE 781 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhh
Confidence 9999999999999999999999999986 3479999999888887664 45566555543
No 394
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.87 E-value=1.8e-21 Score=210.00 Aligned_cols=220 Identities=21% Similarity=0.299 Sum_probs=151.2
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
..|.++|++++|+ +.++++|.+|++.+|+++||+|++||||||+++.|.+-..|..=++-+-=. -+++.+..+..
T Consensus 74 ~dvk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~l-s~e~~ps~~~a--- 148 (614)
T KOG0927|consen 74 RDVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLL-SREIEPSEKQA--- 148 (614)
T ss_pred ccceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhh-cccCCCchHHH---
Confidence 4799999999996 468999999999999999999999999999999999988886655433110 12222221111
Q ss_pred EEcCCCCCCchhH-------HHHHHcCCCCCCH---HHHHHHHHHHchHHHHHh----C-CCCccccc-cCCCCCCChHH
Q 005205 537 VVPQDTVLFNDTI-------FHNIRYGRLSATE---EEVYDAARRAAIHDTIMN----F-PAKYSTVV-GERGLKLSGGE 600 (709)
Q Consensus 537 ~V~Q~~~LF~gTI-------reNI~~g~~~~s~---~ei~~A~~~a~l~~~I~~----L-p~G~dT~v-Ge~G~~LSGGQ 600 (709)
-|..+.+..+- .|++.-..++... +++++-+...+.+.+=.+ | ..|+.... ...-.+|||||
T Consensus 149 --v~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 149 --VQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred --HHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 11111122222 1232222122111 122222221111111000 0 12333322 33457999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCE-EEEecChH
Q 005205 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGK-VIEQGSHD 678 (709)
Q Consensus 601 rQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~-Ive~Gth~ 678 (709)
|-|++|||||+.+|++|+|||||.+||.++-.-+-+-|.+..+. |+++++|--.++.. |-.|+-|++++ +.-.|+++
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYD 305 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHH
Confidence 99999999999999999999999999999999998989875333 89999999999987 99999999999 77889999
Q ss_pred HHhhcc
Q 005205 679 DLLTKA 684 (709)
Q Consensus 679 eLl~~~ 684 (709)
+.+...
T Consensus 306 qy~~tr 311 (614)
T KOG0927|consen 306 QYVKTR 311 (614)
T ss_pred HHhhHH
Confidence 887653
No 395
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.86 E-value=1.3e-21 Score=191.93 Aligned_cols=85 Identities=28% Similarity=0.334 Sum_probs=78.8
Q ss_pred HHhCCCCccccccCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEec
Q 005205 578 IMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL----KAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAH 652 (709)
Q Consensus 578 I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaH 652 (709)
+.-+|+|-.|++ ||||||||++|||++. .+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 667899999988 9999999999999984 79999999999999999999999999988754 489999999
Q ss_pred CchHHhhcCeEEEEeC
Q 005205 653 RLTTAMQCDEIIVLEN 668 (709)
Q Consensus 653 Rlsti~~aD~Iivl~~ 668 (709)
+++.++.||+++++++
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999999999999986
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.86 E-value=2.1e-21 Score=205.22 Aligned_cols=181 Identities=24% Similarity=0.369 Sum_probs=137.7
Q ss_pred eEEEEecCCcccceeeeeEee-----CCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 463 NVHFSYLTERKILDGVSFVVP-----AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 463 nVsF~Y~~~~~vL~~isl~I~-----~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
+.-++|+.-...+.++.|+++ .||.++++||+|-||||++++|+|..+|++|+ ..++ .|+|
T Consensus 340 ~~lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSy 405 (591)
T COG1245 340 DTLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSY 405 (591)
T ss_pred ceeeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEee
Confidence 334456544455667777664 56889999999999999999999999999997 2222 5999
Q ss_pred EcCCCC-CCchhHHHHHHcCCCC-CCHHHH-HHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 538 VPQDTV-LFNDTIFHNIRYGRLS-ATEEEV-YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 538 V~Q~~~-LF~gTIreNI~~g~~~-~s~~ei-~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
=||-.. -|+|||++=+.-..++ +.+.-. .+.++--++ +-.+...-.+|||||-||+|||-||.|++
T Consensus 406 KPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l-----------~~i~e~~v~~LSGGELQRvaIaa~L~reA 474 (591)
T COG1245 406 KPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL-----------EDLLERPVDELSGGELQRVAIAAALSREA 474 (591)
T ss_pred cceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccch-----------HHHHhcccccCCchhHHHHHHHHHhcccc
Confidence 999432 3999999987644333 111111 122333333 33333445689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeC
Q 005205 615 PILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLEN 668 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~ 668 (709)
++.+||||++.||.+-.-.+-++|++.. .++|.++|-|++..+.. +||++|++.
T Consensus 475 DlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 475 DLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred CEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 9999999999999998888888898876 56899999999999886 899999974
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=8.9e-22 Score=211.24 Aligned_cols=203 Identities=30% Similarity=0.389 Sum_probs=145.2
Q ss_pred CceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 456 ~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
..+|..+|.+.+|. ++.+|++-++++..|.++++||++|+|||||++.|.. |.|.+-. +. +++|.--
T Consensus 78 ~~Di~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~--ve----qE~~g~~ 144 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFH--VE----QEVRGDD 144 (582)
T ss_pred ccceeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccC--ch----hheeccc
Confidence 35799999999996 6789999999999999999999999999999999998 4432221 11 1111111
Q ss_pred EEEcCCCCCCchhHHHHHHcCCCC----CCHHHHHH-HHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 536 GVVPQDTVLFNDTIFHNIRYGRLS----ATEEEVYD-AARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 536 ~~V~Q~~~LF~gTIreNI~~g~~~----~s~~ei~~-A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
-...|+ .+=.+|-+.-+..-.+. .+.+||.. +++-.|..+..+..| -..||||=|=|+|||||+
T Consensus 145 t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLARAl 213 (582)
T KOG0062|consen 145 TEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALARAL 213 (582)
T ss_pred hHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHHHH
Confidence 111111 12333444443322211 13455554 555555555454444 258999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEE-EEecChHHHhhcc
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKV-IEQGSHDDLLTKA 684 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~I-ve~Gth~eLl~~~ 684 (709)
+++|+||+|||||..||..+-.-+.+-|.... .|+|+|+|+-+.+.. |--||-+++=|+ .-.|++++..+.+
T Consensus 214 f~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k 287 (582)
T KOG0062|consen 214 FAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTK 287 (582)
T ss_pred hcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhh
Confidence 99999999999999999999999888898753 899999999888876 777888877665 3567777776543
No 398
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=7.1e-21 Score=182.64 Aligned_cols=207 Identities=29% Similarity=0.451 Sum_probs=164.7
Q ss_pred cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC----CCCCEEEECCEeCCCCCHHHhhc----ceEEEcCCCC
Q 005205 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD----THSGSIRIDGQDICEVTLESLRK----SIGVVPQDTV 543 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~----p~~G~I~idG~di~~~~~~~lR~----~i~~V~Q~~~ 543 (709)
..+.+++|++...||+-++||+||||||-++|.|+|... .+.-..++|++|+-.+++..-|+ .|++++|||.
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence 478999999999999999999999999999999999764 35667788999999999998886 4679999996
Q ss_pred CC---chhH----HHHHHcCC---C-----CCCHHHHHHHHHHHchHH--HHHhCCCCccccccCCCCCCChHHHHHHHH
Q 005205 544 LF---NDTI----FHNIRYGR---L-----SATEEEVYDAARRAAIHD--TIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (709)
Q Consensus 544 LF---~gTI----reNI~~g~---~-----~~s~~ei~~A~~~a~l~~--~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaI 606 (709)
-- +.+| -+||-.+. . ..-..+-.+.+.++|+.| .|++ -|- ..|-.|+-|++.|
T Consensus 100 sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~---SYP-------~ElTeGE~QKVMI 169 (330)
T COG4170 100 SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR---SYP-------YELTEGECQKVMI 169 (330)
T ss_pred hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---hCc-------chhccCcceeeee
Confidence 43 2233 45653221 0 122445556777777743 3432 232 3455677899999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 607 ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 607 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
|-|+..+|++||-||||.++|+.|..+|++-|.++. .+.|+++|+|++.++.. ||+|-||-=|+-||.+.-++|++.
T Consensus 170 A~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~ 249 (330)
T COG4170 170 AIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTM 249 (330)
T ss_pred ehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcC
Confidence 999999999999999999999999999999987765 46789999999998865 999999999999999999999985
Q ss_pred -ccHHH
Q 005205 684 -AGRYA 688 (709)
Q Consensus 684 -~g~Y~ 688 (709)
+-.|-
T Consensus 250 PhHPYT 255 (330)
T COG4170 250 PHHPYT 255 (330)
T ss_pred CCCchH
Confidence 44463
No 399
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=2.9e-20 Score=195.53 Aligned_cols=76 Identities=26% Similarity=0.352 Sum_probs=71.1
Q ss_pred CCChHHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCE
Q 005205 595 KLSGGEKQRVALARAFLK----APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGK 670 (709)
Q Consensus 595 ~LSGGQrQRiaIARAll~----~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~ 670 (709)
.|||||+||++|||+++. +|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997653 9999999999999999999999999999888899999999999999999999999874
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=3.1e-20 Score=187.53 Aligned_cols=180 Identities=18% Similarity=0.230 Sum_probs=115.4
Q ss_pred eeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHh-h-----cceEEEcCCCCCCchh-
Q 005205 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-R-----KSIGVVPQDTVLFNDT- 548 (709)
Q Consensus 476 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~l-R-----~~i~~V~Q~~~LF~gT- 548 (709)
+++.++..+| ..+|+|++|||||||+..|.-..-...... . +.-...++ + ..|-...+.. ...
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~-----r~~~~~~~i~~g~~~~~v~~~~~~~---~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-G-----RAKKVGEFVKRGCDEGTIEIELYGN---PGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-c-----cccCHHHHhhCCCCcEEEEEEEEeC---CCcc
Confidence 3455555554 568999999999999997754332111100 0 00011111 1 1111111110 000
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH----hccCCCEEEEeCCCC
Q 005205 549 IFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA----FLKAPPILLCDEATS 624 (709)
Q Consensus 549 IreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA----ll~~p~ILILDEaTS 624 (709)
..+|+.+. .+.+.+.+++..... |.+..+|.+.+.. ..+...||||||||+++|++ ++.+|+++|+||||+
T Consensus 85 ~~~n~~~~---~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 85 QVDNLCQF---LPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred ccCCceEE---EchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 23344322 345666677776655 6667788776543 45678999999999887754 468999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcC--C-CeEEEEecCchH-HhhcC--eEEEEeCCE
Q 005205 625 ALDSTTEAEILNALKSLAN--N-RTSIFIAHRLTT-AMQCD--EIIVLENGK 670 (709)
Q Consensus 625 aLD~~tE~~I~~~L~~l~~--~-~TvIvIaHRlst-i~~aD--~Iivl~~G~ 670 (709)
+||+.+.+.+.+.|++..+ + .|+|+|||++.. +..|| +|+||++|+
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 160 GMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 9999999999999988754 3 479999999754 44465 778888775
No 401
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.82 E-value=2.6e-20 Score=186.57 Aligned_cols=145 Identities=17% Similarity=0.089 Sum_probs=111.1
Q ss_pred ceeeeeEeeCCc-EEEEEcCCCccHHHHHHHHh--------cCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCC
Q 005205 475 LDGVSFVVPAGK-SVAIVGTSGSGKSTILRLLF--------RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF 545 (709)
Q Consensus 475 L~~isl~I~~Ge-~vaIVG~SGsGKSTL~~LL~--------rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF 545 (709)
.-++||++++|+ +++|+||+|||||||++.|. |++-|....+ .++|+.|.-..
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~- 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFAD- 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEe-
Confidence 447899999996 69999999999999999998 6666653221 23444444211
Q ss_pred chhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 005205 546 NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSA 625 (709)
Q Consensus 546 ~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSa 625 (709)
++. +..+.++-..+|+|+||+..|++++ .+|+++++||||++
T Consensus 79 ---------lg~----------------------------~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~g 120 (200)
T cd03280 79 ---------IGD----------------------------EQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSG 120 (200)
T ss_pred ---------cCc----------------------------hhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCC
Confidence 110 0011223358999999999999985 89999999999999
Q ss_pred CCHHHHHHHHH-HHHHhc-CCCeEEEEecCchHHhhcCeEEEEeCCEEEEec
Q 005205 626 LDSTTEAEILN-ALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQG 675 (709)
Q Consensus 626 LD~~tE~~I~~-~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~G 675 (709)
+|+++...+.. .++.+. .++|+|++||.....+.||++++|++|+++..+
T Consensus 121 lD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 121 TDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 99999888864 466554 478999999998878889999999999998663
No 402
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=4.8e-20 Score=217.09 Aligned_cols=205 Identities=29% Similarity=0.469 Sum_probs=171.9
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC---CCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCch-h
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT---HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-T 548 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p---~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~g-T 548 (709)
++|+|+|.-++||+.+-+.||.|||||||++.|+|-.+- ..|+|..||+|.++... ++.++|.+|+...|.. |
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccceeE
Confidence 689999999999999999999999999999999997754 35699999999999987 8899999998887764 9
Q ss_pred HHHHHHcCC----C-----CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCC-CCCChHHHHHHHHHHHhccCCCEEE
Q 005205 549 IFHNIRYGR----L-----SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG-LKLSGGEKQRVALARAFLKAPPILL 618 (709)
Q Consensus 549 IreNI~~g~----~-----~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G-~~LSGGQrQRiaIARAll~~p~ILI 618 (709)
+||-|.|.. | +.+++|-.++...--+ -|-.|....||.||.+. ...|||||.|+++|-+++.+|+++.
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~l--kilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~ 283 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLL--KILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILF 283 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHH--HHhCchhhccceecccccccccCcccceeeeeeeeecCcceee
Confidence 999998752 2 2333332222111111 24567789999999866 6899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCch--HHhhcCeEEEEeCCEEEEecChHHHhh
Q 005205 619 CDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLT--TAMQCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 619 LDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRls--ti~~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
+||+|-+||+.|.-+|.++|+++. -+.|.++.=|..+ +..-.|.|++|.+|++|-+|+.++.+.
T Consensus 284 ~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 284 WDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999999998875 3677777777754 788899999999999999999998874
No 403
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.81 E-value=3.4e-19 Score=200.25 Aligned_cols=117 Identities=27% Similarity=0.425 Sum_probs=101.3
Q ss_pred chHHHHHhCCC-----------Cccc-cccCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHH
Q 005205 573 AIHDTIMNFPA-----------KYST-VVGERGLKLSGGEKQRVALARAFLKAP---PILLCDEATSALDSTTEAEILNA 637 (709)
Q Consensus 573 ~l~~~I~~Lp~-----------G~dT-~vGe~G~~LSGGQrQRiaIARAll~~p---~ILILDEaTSaLD~~tE~~I~~~ 637 (709)
.+++|.+..|. |+.. .+|+.-..|||||.|||-||.-|.|+. -++||||||.+|-.+--+++++.
T Consensus 788 EA~~FF~~~p~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~V 867 (935)
T COG0178 788 EALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEV 867 (935)
T ss_pred HHHHHHhcchHHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHH
Confidence 45566666662 4432 469999999999999999999999998 89999999999999999999999
Q ss_pred HHHhc-CCCeEEEEecCchHHhhcCeEEEE------eCCEEEEecChHHHhhcccHHHH
Q 005205 638 LKSLA-NNRTSIFIAHRLTTAMQCDEIIVL------ENGKVIEQGSHDDLLTKAGRYAQ 689 (709)
Q Consensus 638 L~~l~-~~~TvIvIaHRlsti~~aD~Iivl------~~G~Ive~Gth~eLl~~~g~Y~~ 689 (709)
|.++. +|.|||+|-|.|..|+.||.|+-| +.|+||.+||++|+.+..+.|--
T Consensus 868 L~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg 926 (935)
T COG0178 868 LHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTG 926 (935)
T ss_pred HHHHHhCCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhH
Confidence 98875 789999999999999999999998 47999999999999986655543
No 404
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.80 E-value=5.2e-19 Score=169.58 Aligned_cols=208 Identities=22% Similarity=0.351 Sum_probs=158.4
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeC-CCCCH-------
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI-CEVTL------- 528 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di-~~~~~------- 528 (709)
..|++.++.|+|+...|++-|+|+++|+|...-+||.+|||||||+|+|.|-.-.-.|.|.+.|.+- ++-++
T Consensus 12 ~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~ 91 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLS 91 (291)
T ss_pred ceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCcee
Confidence 5799999999999777999999999999999999999999999999999999888889999999753 22222
Q ss_pred ---HHhhcceEEEcCCCCCC-chhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 529 ---ESLRKSIGVVPQDTVLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 529 ---~~lR~~i~~V~Q~~~LF-~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
.+|++..++-- |..|- +-+.. -+.+|-...+.++-.+..+ =+|-.+-=|-..+|-|||.|+
T Consensus 92 YLGgeW~~~~~~ag-evplq~D~sae-~mifgV~g~dp~Rre~LI~-------------iLDIdl~WRmHkvSDGqrRRV 156 (291)
T KOG2355|consen 92 YLGGEWSKTVGIAG-EVPLQGDISAE-HMIFGVGGDDPERREKLID-------------ILDIDLRWRMHKVSDGQRRRV 156 (291)
T ss_pred Eecccccccccccc-cccccccccHH-HHHhhccCCChhHhhhhhh-------------heeccceEEEeeccccchhhh
Confidence 23555544444 22222 22333 3334432222222211111 134444556678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHH
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDD 679 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~e 679 (709)
-|+--||+.=++|+|||-|--||....+.+.+-+++-. +++|++.-||=..-++. +.+++.|.+|+++..-.+++
T Consensus 157 QicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~ 234 (291)
T KOG2355|consen 157 QICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQK 234 (291)
T ss_pred HHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccch
Confidence 99999999999999999999999999999999987654 68999999999887665 89999999999998444433
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.80 E-value=1e-18 Score=216.05 Aligned_cols=211 Identities=22% Similarity=0.291 Sum_probs=147.1
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHh------cC---CCCCCCEEEECCEeCCCCC----------HHHhhc
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF------RS---FDTHSGSIRIDGQDICEVT----------LESLRK 533 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~------rl---y~p~~G~I~idG~di~~~~----------~~~lR~ 533 (709)
.-|+|++++||-|..++|.|-||||||||++=.+ .+ ++.-+--|.||-.||..-+ .+.+|+
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 4599999999999999999999999999997433 11 1334455888877775443 344555
Q ss_pred ceEEEcC------CCCC--Cc------------hhHHHHHHcC-------------------------CCCCC---HHHH
Q 005205 534 SIGVVPQ------DTVL--FN------------DTIFHNIRYG-------------------------RLSAT---EEEV 565 (709)
Q Consensus 534 ~i~~V~Q------~~~L--F~------------gTIreNI~~g-------------------------~~~~s---~~ei 565 (709)
-+|-.|+ .+-. || |.|+=++.|- ..++. +-.|
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 5543222 1111 11 0011111110 00000 0011
Q ss_pred HHHHH-------HHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHH
Q 005205 566 YDAAR-------RAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA---PPILLCDEATSALDSTTEAEIL 635 (709)
Q Consensus 566 ~~A~~-------~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~---p~ILILDEaTSaLD~~tE~~I~ 635 (709)
.+|++ .+..-+.+..+--||= .+|+.-..|||||.|||-||.-|.++ +.++||||||.+|++..-+++.
T Consensus 1664 ~ea~~~F~~~~~i~~~L~~L~~vGLgYl-~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll 1742 (1809)
T PRK00635 1664 EEVAETFPFLKKIQKPLQALIDNGLGYL-PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL 1742 (1809)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcCCCee-eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH
Confidence 12211 1122233344444554 47999999999999999999999876 7899999999999999999999
Q ss_pred HHHHHhc-CCCeEEEEecCchHHhhcCeEEEEe------CCEEEEecChHHHhhcc
Q 005205 636 NALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLE------NGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 636 ~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl~------~G~Ive~Gth~eLl~~~ 684 (709)
+.|+++. +|.|+|+|-|++..++.||.|+-|- .|+||.+||++|+.+..
T Consensus 1743 ~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1743 VQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred HHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCC
Confidence 9998874 6899999999999999999999994 68999999999999754
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.78 E-value=1.7e-18 Score=167.53 Aligned_cols=134 Identities=28% Similarity=0.366 Sum_probs=98.9
Q ss_pred eEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE-EEcCCCCCCchhHHHHHHcCCC
Q 005205 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG-VVPQDTVLFNDTIFHNIRYGRL 558 (709)
Q Consensus 480 l~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~-~V~Q~~~LF~gTIreNI~~g~~ 558 (709)
+.+.++..+.|+||+||||||+++.+.-..-..+|.+.... ++ +.+ .+++...-|
T Consensus 16 i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~------------- 71 (162)
T cd03227 16 VTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL------------- 71 (162)
T ss_pred EecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE-------------
Confidence 34445579999999999999999987554444444433310 00 111 122222111
Q ss_pred CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHH
Q 005205 559 SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK----APPILLCDEATSALDSTTEAEI 634 (709)
Q Consensus 559 ~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~----~p~ILILDEaTSaLD~~tE~~I 634 (709)
| -+. .+||+||+||++|||+|.. +|+++|||||++++|++....+
T Consensus 72 -------------------i-------~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l 120 (162)
T cd03227 72 -------------------I-------FTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQAL 120 (162)
T ss_pred -------------------e-------hhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 0 000 0199999999999999986 7899999999999999999999
Q ss_pred HHHHHHhc-CCCeEEEEecCchHHhhcCeEEEEeC
Q 005205 635 LNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLEN 668 (709)
Q Consensus 635 ~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl~~ 668 (709)
.+.+.+.. +++|+|++||++.....+|+++.|+.
T Consensus 121 ~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 121 AEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 99988764 35899999999999999999999964
No 407
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.77 E-value=2.4e-18 Score=180.05 Aligned_cols=178 Identities=27% Similarity=0.468 Sum_probs=139.8
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC--------CCCCCCEEEECCEeCCCCCHHHhhcceEEEcC--CC
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--------FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ--DT 542 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl--------y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q--~~ 542 (709)
++|+|+||+|+||+.++|||+|||||||++++|+|. |.|++|.|.+--..+ -+++|- ||
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----------hhccCccccc
Confidence 589999999999999999999999999999999986 789999997743211 123333 45
Q ss_pred CCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 005205 543 VLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEA 622 (709)
Q Consensus 543 ~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEa 622 (709)
.+=.-||-|-+.= .+ -+-..-.+.+..||+.|-+.- -. .=..||-|||-|..||+++-..|.+++.||.
T Consensus 466 ~f~~~tilehl~s-~t-GD~~~AveILnraGlsDAvly-----Rr----~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 466 EFGEVTILEHLRS-KT-GDLNAAVEILNRAGLSDAVLY-----RR----KFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred ccCchhHHHHHhh-cc-CchhHHHHHHHhhccchhhhh-----hc----cHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 5444577777631 11 111223467788888776542 22 2357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh--cCeEEEEeCCEEE
Q 005205 623 TSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ--CDEIIVLENGKVI 672 (709)
Q Consensus 623 TSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~--aD~Iivl~~G~Iv 672 (709)
-|.||+.|...+...|.++. .+-|.++||||...+.. -|+++.+-=|++.
T Consensus 535 ~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 535 AAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 99999999999999998887 67899999999998875 4999888766654
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.75 E-value=3.3e-18 Score=173.77 Aligned_cols=153 Identities=22% Similarity=0.182 Sum_probs=115.6
Q ss_pred CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE-EEcCCCCCCchhH
Q 005205 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG-VVPQDTVLFNDTI 549 (709)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~-~V~Q~~~LF~gTI 549 (709)
.+.+.+|+++++++|+.+.|+||+||||||+++.+.- -.+..++| +||.+...+. +
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~ 72 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--I 72 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--c
Confidence 4578999999999999999999999999999999981 24455666 7777653222 1
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCC---CC
Q 005205 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF--LKAPPILLCDEA---TS 624 (709)
Q Consensus 550 reNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl--l~~p~ILILDEa---TS 624 (709)
.|.| ....++.| .. ..++|.|++|+..+|+++ +.+|+++||||| |+
T Consensus 73 ~~~i---------------l~~~~l~d----------~~----~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~ 123 (222)
T cd03285 73 VDCI---------------LARVGASD----------SQ----LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTS 123 (222)
T ss_pred ccee---------------Eeeecccc----------ch----hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCC
Confidence 1111 11111111 11 357999999999999999 999999999999 99
Q ss_pred CCCHHHHHHHH-HHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecC
Q 005205 625 ALDSTTEAEIL-NALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGS 676 (709)
Q Consensus 625 aLD~~tE~~I~-~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gt 676 (709)
.+|+....... +.+.+ ..++|+|++||.....+.||++..+++|++...++
T Consensus 124 ~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 124 TYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 99998776443 55543 24799999999766666799999999999987664
No 409
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=4.4e-17 Score=170.84 Aligned_cols=191 Identities=17% Similarity=0.237 Sum_probs=121.6
Q ss_pred eeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-----------------------------------------CCCC
Q 005205 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----------------------------------------THSG 514 (709)
Q Consensus 476 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-----------------------------------------p~~G 514 (709)
++.++++.+| .++|+||||||||||+..|.=+.. ....
T Consensus 13 ~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~~ 91 (270)
T cd03242 13 AELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGGR 91 (270)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCce
Confidence 3456777776 688999999999999876532221 0111
Q ss_pred EEEECCEeCCC-CCHHHhhcceEEEcCCCCCCchhHHHHHHcCCC---CCC--HHHHHHHHHHH--chHHHHHhCCCCcc
Q 005205 515 SIRIDGQDICE-VTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL---SAT--EEEVYDAARRA--AIHDTIMNFPAKYS 586 (709)
Q Consensus 515 ~I~idG~di~~-~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~---~~s--~~ei~~A~~~a--~l~~~I~~Lp~G~d 586 (709)
.+++||..++. -+...+-..|.+.|++..|+.++-.+-..|-+. ... -.+.++..+++ ...+ +.+-|+..|
T Consensus 92 ~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~-~~~g~~~d~ 170 (270)
T cd03242 92 KARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNA-LLKGPHRDD 170 (270)
T ss_pred EEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HhCCCChhh
Confidence 45577777655 223334455777788888885544333332211 111 11122222222 1111 112366555
Q ss_pred ccccCCCC----CCChHHHHHHHHHHHh---------ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecC
Q 005205 587 TVVGERGL----KLSGGEKQRVALARAF---------LKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHR 653 (709)
Q Consensus 587 T~vGe~G~----~LSGGQrQRiaIARAl---------l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHR 653 (709)
..+.-++. -+|+||||+++|||+| +++|+++||||||++||+...+.+.+.|++.. .+++++|.
T Consensus 171 l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~ 247 (270)
T cd03242 171 LLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTD 247 (270)
T ss_pred eEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCC
Confidence 55543333 3799999999999997 48999999999999999999999999998753 45555555
Q ss_pred chHHhh-c---CeEEEEeCCEE
Q 005205 654 LTTAMQ-C---DEIIVLENGKV 671 (709)
Q Consensus 654 lsti~~-a---D~Iivl~~G~I 671 (709)
...+.+ | ++|+.+++|+|
T Consensus 248 ~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 248 LADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred chhccchhccCccEEEEeCcEE
Confidence 444433 4 78999999986
No 410
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.73 E-value=3.3e-18 Score=151.48 Aligned_cols=76 Identities=29% Similarity=0.280 Sum_probs=72.8
Q ss_pred cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHH
Q 005205 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIre 551 (709)
.++|++++|++++|+.++|+||||||||||+++++ +|+|.++|.|+..++.++.++.++++||+ +|.+||+|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 46899999999999999999999999999999987 89999999999999999999999999999 99999999
Q ss_pred HHHc
Q 005205 552 NIRY 555 (709)
Q Consensus 552 NI~~ 555 (709)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9988
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=3.6e-17 Score=194.49 Aligned_cols=100 Identities=26% Similarity=0.406 Sum_probs=90.5
Q ss_pred Ccccc-ccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh
Q 005205 584 KYSTV-VGERGLKLSGGEKQRVALARAFLKAP--PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ 659 (709)
Q Consensus 584 G~dT~-vGe~G~~LSGGQrQRiaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~ 659 (709)
|++.. ++.....|||||+|||+|||||..+| ++|||||||++||+++.+.+.+.|+++. +|+|+|+|+|+++.++.
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 44433 56777899999999999999999986 8999999999999999999999999885 47899999999999999
Q ss_pred cCeEEEE------eCCEEEEecChHHHhhc
Q 005205 660 CDEIIVL------ENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 660 aD~Iivl------~~G~Ive~Gth~eLl~~ 683 (709)
||+|++| ++|+|++.|+.+|+...
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998653
No 412
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.71 E-value=4.5e-17 Score=194.03 Aligned_cols=100 Identities=24% Similarity=0.388 Sum_probs=91.0
Q ss_pred Ccccc-ccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh
Q 005205 584 KYSTV-VGERGLKLSGGEKQRVALARAFLKAP--PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ 659 (709)
Q Consensus 584 G~dT~-vGe~G~~LSGGQrQRiaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~ 659 (709)
|++.. .+..-.+|||||||||+|||||..+| ++|||||||++||+...+.+.+.|+++. +|.|+|+|+|++..+..
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 55433 46677899999999999999999997 9999999999999999999999999886 47999999999999999
Q ss_pred cCeEEEE------eCCEEEEecChHHHhhc
Q 005205 660 CDEIIVL------ENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 660 aD~Iivl------~~G~Ive~Gth~eLl~~ 683 (709)
||+|++| ++|+|+.+|+.+|+++.
T Consensus 557 aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 557 ADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999999764
No 413
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.71 E-value=3.6e-17 Score=173.41 Aligned_cols=190 Identities=23% Similarity=0.284 Sum_probs=133.9
Q ss_pred eEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEE-----------ECCEeCCCCCHHHh
Q 005205 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR-----------IDGQDICEVTLESL 531 (709)
Q Consensus 463 nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~-----------idG~di~~~~~~~l 531 (709)
++.-+|..+...|..+- +.++|+.+||+|++|-||||.+|+|+|-..|+=|+-- +-|..++++=.+-.
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 45567765444454443 3689999999999999999999999999999988521 11111111111111
Q ss_pred hc------ceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 005205 532 RK------SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (709)
Q Consensus 532 R~------~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRia 605 (709)
-. ++-||.-=|-.+.||++|=+.--+.. -..+|.|+.| +++-.+...-..||||+-||+|
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~------------g~~devve~l--~L~nvl~r~v~~LSGGELQr~a 223 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVKGKVGELLKKVDER------------GKFDEVVERL--GLENVLDRDVSELSGGELQRVA 223 (591)
T ss_pred cCCcceecchHHHHHHHHHhcchHHHHHHhhhhc------------CcHHHHHHHh--cchhhhhhhhhhcCchHHHHHH
Confidence 11 12333334556677776665432211 1233344443 3444555566789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchHHhh-cCeEEEEe
Q 005205 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQ-CDEIIVLE 667 (709)
Q Consensus 606 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRlsti~~-aD~Iivl~ 667 (709)
||-|++|+++++++|||||-||-...-..-+.++++.+ +++||+|-|+|+.+.. +|-|.++-
T Consensus 224 Iaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 224 IAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 99999999999999999999999888777888888887 6999999999999986 89998875
No 414
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=3.9e-17 Score=204.63 Aligned_cols=119 Identities=24% Similarity=0.266 Sum_probs=107.4
Q ss_pred CCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHH------HHHHHHHhccCCCEE
Q 005205 544 LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ------RVALARAFLKAPPIL 617 (709)
Q Consensus 544 LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQ------RiaIARAll~~p~IL 617 (709)
.|+||++|||.+ +|+++++ +.|++.+++++|+..+|.| ||.++.+| .||||||| |++||||++.+|+||
T Consensus 1153 ~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 499999999999 8988877 7999999999999999999 99999987 89999999 999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc------CCCeEEEEecCchHHh------hcCeEEEEe
Q 005205 618 LCDEATSALDSTTEAEILNALKSLA------NNRTSIFIAHRLTTAM------QCDEIIVLE 667 (709)
Q Consensus 618 ILDEaTSaLD~~tE~~I~~~L~~l~------~~~TvIvIaHRlsti~------~aD~Iivl~ 667 (709)
+|||||++||+.+...+.+.|.++. .+.|+|+|||++..+. .||..+-+.
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 9999999999999999999887763 3679999999999876 356666553
No 415
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.68 E-value=9.4e-17 Score=161.14 Aligned_cols=154 Identities=17% Similarity=0.130 Sum_probs=104.1
Q ss_pred eeeEeeCCcEEEEEcCCCccHHHHHHHHhc-CCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcC
Q 005205 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFR-SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG 556 (709)
Q Consensus 478 isl~I~~Ge~vaIVG~SGsGKSTL~~LL~r-ly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g 556 (709)
.++++.+|++++|+||+||||||+++.|.+ .+.+..|...- ..+..+++..|....|. ..++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~~--~~d~---- 84 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRIG--AEDS---- 84 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEec--Cccc----
Confidence 345666899999999999999999999983 32222332110 01123333322221111 0000
Q ss_pred CCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 005205 557 RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILN 636 (709)
Q Consensus 557 ~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~ 636 (709)
+-++-..+|++++| +..+-++..+|+++||||||+++|+.....+..
T Consensus 85 --------------------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 85 --------------------------------ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred --------------------------------ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 11222355666665 666677889999999999999999988776654
Q ss_pred H-HHHhc-CCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHh
Q 005205 637 A-LKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 637 ~-L~~l~-~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl 681 (709)
. ++.+. +++|+|++||+...++.+|++..+++|++.+.++.+++.
T Consensus 132 ~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 178 (202)
T cd03243 132 AVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGLT 178 (202)
T ss_pred HHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCeee
Confidence 4 44433 478999999999999999999999999999888754443
No 416
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.68 E-value=6e-17 Score=161.85 Aligned_cols=145 Identities=20% Similarity=0.254 Sum_probs=99.4
Q ss_pred CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCC-chhH
Q 005205 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTI 549 (709)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF-~gTI 549 (709)
+++|++|++|+. |+.++|+||||||||||++.|.+..- +..+|.++... .+++|...+| .-|+
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~ 76 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRV 76 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccc
Confidence 356888887665 79999999999999999999976432 12366655321 2566755455 5599
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 005205 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDST 629 (709)
Q Consensus 550 reNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~ 629 (709)
+||+.++.. ...+|..+ +.+.++.+. +.+|+++|+||||+++|+.
T Consensus 77 ~d~l~~~~s-~~~~e~~~------~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~ 121 (199)
T cd03283 77 SDDLRDGIS-YFYAELRR------LKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred hhccccccC-hHHHHHHH------HHHHHHhcc----------------------------CCCCeEEEEecccCCCCHH
Confidence 999988753 22333322 233333331 0799999999999999999
Q ss_pred HHHHHHH-HHHHhc-CCCeEEEEecCchHHhhc---CeEEEE
Q 005205 630 TEAEILN-ALKSLA-NNRTSIFIAHRLTTAMQC---DEIIVL 666 (709)
Q Consensus 630 tE~~I~~-~L~~l~-~~~TvIvIaHRlsti~~a---D~Iivl 666 (709)
+...+.. .++.+. ++.|+|++||.+..+... ++|-.+
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 8876654 355543 478999999998876654 455443
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.66 E-value=4.5e-16 Score=161.80 Aligned_cols=142 Identities=22% Similarity=0.339 Sum_probs=106.1
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC-HHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHH
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT-LESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEE 564 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~-~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~e 564 (709)
+.++|+||+|||||||++.|+|++.|++|+|.++|.++..++ ..++...++++||...--..++.|| .| ..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~----~~---k~~ 184 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG----CP---KAE 184 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc----ch---HHH
Confidence 689999999999999999999999999999999999998775 5678888999999763222233333 11 000
Q ss_pred HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC
Q 005205 565 VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANN 644 (709)
Q Consensus 565 i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~ 644 (709)
++ ..++|++ +|+++|+|||++ ++.+...++.+..|
T Consensus 185 --------~~-----------------------------~~~i~~~--~P~villDE~~~------~e~~~~l~~~~~~G 219 (270)
T TIGR02858 185 --------GM-----------------------------MMLIRSM--SPDVIVVDEIGR------EEDVEALLEALHAG 219 (270)
T ss_pred --------HH-----------------------------HHHHHhC--CCCEEEEeCCCc------HHHHHHHHHHHhCC
Confidence 11 5566664 999999999984 23344444545579
Q ss_pred CeEEEEecCchH--H------------hhcCeEEEEeCCEEEEecChHHHh
Q 005205 645 RTSIFIAHRLTT--A------------MQCDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 645 ~TvIvIaHRlst--i------------~~aD~Iivl~~G~Ive~Gth~eLl 681 (709)
.|+|+++|..+. + .-+||+++|++|+ ..|+.++..
T Consensus 220 ~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 220 VSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred CEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 999999997655 3 3479999999887 667766553
No 418
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.56 E-value=5.5e-15 Score=149.64 Aligned_cols=155 Identities=21% Similarity=0.182 Sum_probs=104.8
Q ss_pred CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-CCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCC-chh
Q 005205 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDT 548 (709)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF-~gT 548 (709)
.+.+.+|++|++++ ++++|+||+||||||+++.+.+..-. ..|. ..+ ..+..++++.| +| .-+
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~---------~vp--~~~~~i~~~~~---i~~~~~ 81 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGS---------FVP--ASKAEIGVVDR---IFTRIG 81 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCC---------eec--cccceecceee---EeccCC
Confidence 34688999999887 99999999999999999999764311 1121 111 12345677755 23 224
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCC---C
Q 005205 549 IFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF--LKAPPILLCDEA---T 623 (709)
Q Consensus 549 IreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl--l~~p~ILILDEa---T 623 (709)
+.||+..|.. -=...+..+++++ ..+|+++||||| |
T Consensus 82 ~~~~ls~g~s---------------------------------------~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 82 ASDDLAGGRS---------------------------------------TFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred chhhhccCcc---------------------------------------hHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 5555554421 1111122344444 469999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHH
Q 005205 624 SALDSTTE-AEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDL 680 (709)
Q Consensus 624 SaLD~~tE-~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eL 680 (709)
+++|...- ..+.+.|.+. .++|+|++||.....+.+|++.-+++|++...++-+++
T Consensus 123 ~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 123 STYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred ChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 99998662 4455666442 37899999999888888998888889998877765555
No 419
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.56 E-value=2.1e-14 Score=151.23 Aligned_cols=201 Identities=25% Similarity=0.411 Sum_probs=149.1
Q ss_pred EEecCCcccceeeeeEeeCCc-----EEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcC
Q 005205 466 FSYLTERKILDGVSFVVPAGK-----SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ 540 (709)
Q Consensus 466 F~Y~~~~~vL~~isl~I~~Ge-----~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 540 (709)
++||..+..+-++.|.|+.|+ .+...|++|-||||++++++|..+|++|. ++..+ +++|=||
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSykpq 409 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYKPQ 409 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceecccc
Confidence 678877788999999999996 57889999999999999999999999872 33333 4788888
Q ss_pred CCC-CCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 005205 541 DTV-LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLC 619 (709)
Q Consensus 541 ~~~-LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILIL 619 (709)
... =|.+|+|+=+ .+.+|.|-..-..-..+++ |-..+-.++..-.+||||+.||+|||-+|=+.+++.+.
T Consensus 410 kispK~~~tvR~ll--------~~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYli 480 (592)
T KOG0063|consen 410 KISPKREGTVRQLL--------HTKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLI 480 (592)
T ss_pred ccCccccchHHHHH--------HHHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEe
Confidence 643 4889998765 2344444443333333333 44455556667789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEEecCchHHh-hcCeEEEEeC--CEEEEecChHHHhhcccHHH
Q 005205 620 DEATSALDSTTEAEILNALKSL--ANNRTSIFIAHRLTTAM-QCDEIIVLEN--GKVIEQGSHDDLLTKAGRYA 688 (709)
Q Consensus 620 DEaTSaLD~~tE~~I~~~L~~l--~~~~TvIvIaHRlsti~-~aD~Iivl~~--G~Ive~Gth~eLl~~~g~Y~ 688 (709)
|||.+-||++.....-.-+++. ..++|-.+|-|.+-..- .|||++|.+. +...-.-.++.|++-...+.
T Consensus 481 DEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~gmN~fl 554 (592)
T KOG0063|consen 481 DEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLAGMNRFL 554 (592)
T ss_pred cCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHHHhHHHH
Confidence 9999999988765544555553 36799999999987654 4999999984 33333445566665444443
No 420
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.54 E-value=2.4e-14 Score=143.53 Aligned_cols=141 Identities=19% Similarity=0.202 Sum_probs=97.4
Q ss_pred CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE-EEcCCCCCCchhH
Q 005205 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG-VVPQDTVLFNDTI 549 (709)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~-~V~Q~~~LF~gTI 549 (709)
++++.+|++|++++|+.++|+|||||||||+++.+.++. +..++| +||-+. ..-++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccC
Confidence 457899999999999999999999999999999998762 233333 222211 11244
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 005205 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDST 629 (709)
Q Consensus 550 reNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~ 629 (709)
.|||.. .++. +..+.++-.++|+|++|+. .+-++..+|+++|||||++++|+.
T Consensus 72 ~d~I~~------------------------~~~~--~d~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~~ 124 (204)
T cd03282 72 FNRLLS------------------------RLSN--DDSMERNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSSA 124 (204)
T ss_pred hhheeE------------------------ecCC--ccccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCHH
Confidence 445421 1111 1123345578999999764 445578899999999999999997
Q ss_pred HHHHHHHH-HHHhc-CCCeEEEEecCchHHhhcC
Q 005205 630 TEAEILNA-LKSLA-NNRTSIFIAHRLTTAMQCD 661 (709)
Q Consensus 630 tE~~I~~~-L~~l~-~~~TvIvIaHRlsti~~aD 661 (709)
.-..+..+ ++.+. .++|+|++||....++.++
T Consensus 125 ~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 125 DGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 64444333 33332 4789999999998877654
No 421
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.53 E-value=8.7e-15 Score=169.53 Aligned_cols=106 Identities=25% Similarity=0.401 Sum_probs=91.6
Q ss_pred HHHHHHHHHchHHHHHhCCCCccccccCCC------CCCChHHHHHHHHHHHhc----------cCCCEEEEeCCC-CCC
Q 005205 564 EVYDAARRAAIHDTIMNFPAKYSTVVGERG------LKLSGGEKQRVALARAFL----------KAPPILLCDEAT-SAL 626 (709)
Q Consensus 564 ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G------~~LSGGQrQRiaIARAll----------~~p~ILILDEaT-SaL 626 (709)
.+.+.++..+. ++...+|+++++.+++.| ..||||||||++|||||+ .+|++||||||| ++|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~l 510 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGAL 510 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCccc
Confidence 34445554443 455578999999999998 689999999999999887 599999999998 789
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeC-CEE
Q 005205 627 DSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLEN-GKV 671 (709)
Q Consensus 627 D~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~-G~I 671 (709)
|+.+...+.+.|+++ +++|+|+|||+......||++++|++ |+.
T Consensus 511 d~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 511 DAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred chhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 999999999999998 78999999999999999999999986 554
No 422
>PRK00064 recF recombination protein F; Reviewed
Probab=99.53 E-value=1.4e-13 Score=149.95 Aligned_cols=76 Identities=29% Similarity=0.374 Sum_probs=66.3
Q ss_pred CCCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh---cC
Q 005205 594 LKLSGGEKQRVALARAFL---------KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ---CD 661 (709)
Q Consensus 594 ~~LSGGQrQRiaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~---aD 661 (709)
..+|+||+|+++||+++. ++||||+||||+|.||+...+.+.+.+.++ ++++++.+|.+..+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 478999999999999884 899999999999999999999999988753 4688999998766544 56
Q ss_pred eEEEEeCCEE
Q 005205 662 EIIVLENGKV 671 (709)
Q Consensus 662 ~Iivl~~G~I 671 (709)
+++.|++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 423
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.52 E-value=3.3e-14 Score=144.55 Aligned_cols=72 Identities=35% Similarity=0.451 Sum_probs=59.9
Q ss_pred CCChHHHHHHHHH----HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEE
Q 005205 595 KLSGGEKQRVALA----RAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVL 666 (709)
Q Consensus 595 ~LSGGQrQRiaIA----RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl 666 (709)
.||||||-+++|| ..-++++|++||||+.++||....+.+.+.|+++.+++-+|++||+-.+...||+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999987 33457899999999999999999999999999998889999999999999999999876
No 424
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=4.7e-14 Score=148.54 Aligned_cols=196 Identities=26% Similarity=0.379 Sum_probs=135.2
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhc--CCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR--SFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~r--ly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
+|.++|.+.+- .++..+.|-||.|-.|..+++|||+|-|||||++-|.- |--|..=.+++
T Consensus 264 DIKiEnF~ISA-~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLl----------------- 325 (807)
T KOG0066|consen 264 DIKIENFDISA-QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLL----------------- 325 (807)
T ss_pred cceeeeeeeec-ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEe-----------------
Confidence 47888876654 35667889999999999999999999999999998853 33344333443
Q ss_pred EEEcCCCCCCchhHHHHHH---------------------cCCCCCCHHHH---HHHHHH-------HchHHHHHhCCCC
Q 005205 536 GVVPQDTVLFNDTIFHNIR---------------------YGRLSATEEEV---YDAARR-------AAIHDTIMNFPAK 584 (709)
Q Consensus 536 ~~V~Q~~~LF~gTIreNI~---------------------~g~~~~s~~ei---~~A~~~-------a~l~~~I~~Lp~G 584 (709)
+.|+..-=+.|--+-+. -|+..+ .|++ .+-++. |.+...+..| |
T Consensus 326 --CEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~ta-aErl~~v~~ELraiGA~sAEarARRILAGL--G 400 (807)
T KOG0066|consen 326 --CEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTA-AERLKEVADELRAIGADSAEARARRILAGL--G 400 (807)
T ss_pred --eeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHHhccccchhHHHHHHhhc--C
Confidence 44444333222222221 121111 1122 222222 1222233333 7
Q ss_pred ccccccCCC-CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCe
Q 005205 585 YSTVVGERG-LKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDE 662 (709)
Q Consensus 585 ~dT~vGe~G-~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~ 662 (709)
++-.+-++. ..+|||=|-|++|||||+-.|-+|.|||||.+||-..---+-.-|..+ .+|.++|+|.-+.+.+ |..
T Consensus 401 FskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtd 478 (807)
T KOG0066|consen 401 FSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTD 478 (807)
T ss_pred CChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHH
Confidence 888887776 689999999999999999999999999999999987665554556654 4799999999999987 899
Q ss_pred EEEEeCCEEE-EecChH
Q 005205 663 IIVLENGKVI-EQGSHD 678 (709)
Q Consensus 663 Iivl~~G~Iv-e~Gth~ 678 (709)
||-||+-++- -.|+|.
T Consensus 479 IIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 479 IIHLDNQKLHYYRGNYT 495 (807)
T ss_pred HhhhhhhhhhhhcchHH
Confidence 9999988774 456653
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.45 E-value=1.8e-12 Score=143.21 Aligned_cols=177 Identities=20% Similarity=0.286 Sum_probs=129.3
Q ss_pred CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECC---EeCCC-----CCHHHhhcceEEEcCCC
Q 005205 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG---QDICE-----VTLESLRKSIGVVPQDT 542 (709)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG---~di~~-----~~~~~lR~~i~~V~Q~~ 542 (709)
+..+++++ |++++|++++|+|+||+|||||+++|+++++|+.|.|.+.| .++.+ ++...+++.|.+|.+-.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 35689999 99999999999999999999999999999999999999954 44553 45566888899886422
Q ss_pred CCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCC-CCCCChHHHHH-HHHHHHhccCCCEEEEe
Q 005205 543 VLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGER-GLKLSGGEKQR-VALARAFLKAPPILLCD 620 (709)
Q Consensus 543 ~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~-G~~LSGGQrQR-iaIARAll~~p~ILILD 620 (709)
+..-+++..+--...+.|+... +|.|-.+-=. =.++ -|-|| |+++ +..||
T Consensus 224 ----------------~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~--A~A~rEisl~---~ge~P----- 275 (438)
T PRK07721 224 ----------------QPALMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRV--AMAQREIGLA---VGEPP----- 275 (438)
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHH--HHHHHHHHHh---cCCCC-----
Confidence 1112333333233345566664 4777665322 1211 12222 2222 35666
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc---CCC-----eEEEEecCchHHhhcCeEEEEeCCEEEEecChH
Q 005205 621 EATSALDSTTEAEILNALKSLA---NNR-----TSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHD 678 (709)
Q Consensus 621 EaTSaLD~~tE~~I~~~L~~l~---~~~-----TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~ 678 (709)
.|+++|+..-..+.+.++++. +|. |+++.+|+++. .-||++.++.+|+|+..|+-.
T Consensus 276 -~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 276 -TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred -ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHH
Confidence 789999999999999988876 465 99999999995 889999999999999988653
No 426
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.37 E-value=6.6e-13 Score=134.50 Aligned_cols=144 Identities=24% Similarity=0.323 Sum_probs=86.9
Q ss_pred EEEEEcCCCccHHHHH-HHHhcCCCC-----------------CCCEEEECCEeCCCCC-HHHhhcceEEEcCC-C--CC
Q 005205 487 SVAIVGTSGSGKSTIL-RLLFRSFDT-----------------HSGSIRIDGQDICEVT-LESLRKSIGVVPQD-T--VL 544 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~-~LL~rly~p-----------------~~G~I~idG~di~~~~-~~~lR~~i~~V~Q~-~--~L 544 (709)
+++|+|++|||||||+ +++.|.+++ +.|.+.+.+.|+.... ...+|. +++.|. . ..
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~--~~~~~~~~~i~v 88 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRD--GYYIKGQCAIIM 88 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhH--HHhccCCEEEEE
Confidence 6999999999999999 689998765 5688888888875321 122221 122221 1 12
Q ss_pred Cchh-----------------HHHHHH---cCCC-CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCC--hHHH
Q 005205 545 FNDT-----------------IFHNIR---YGRL-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLS--GGEK 601 (709)
Q Consensus 545 F~gT-----------------IreNI~---~g~~-~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LS--GGQr 601 (709)
|+.| ..+|+. .|+. +..+.++. .+. .++.....-.+-. -+..+ |-|+
T Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~--~~~---~~~~~~~~~~~~e-----~Sa~~~~~v~~ 158 (215)
T PTZ00132 89 FDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVK--ARQ---ITFHRKKNLQYYD-----ISAKSNYNFEK 158 (215)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCC--HHH---HHHHHHcCCEEEE-----EeCCCCCCHHH
Confidence 3322 112221 2221 11111110 011 1122222111111 11223 3399
Q ss_pred HHHHHHHHhccCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHhc
Q 005205 602 QRVALARAFLKAPPILLCDEAT-----SALDSTTEAEILNALKSLA 642 (709)
Q Consensus 602 QRiaIARAll~~p~ILILDEaT-----SaLD~~tE~~I~~~L~~l~ 642 (709)
|++.|||+++.+|++++||||| ++||+.+.+.+.+.++++.
T Consensus 159 ~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 159 PFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 9999999999999998864
No 427
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.36 E-value=1.8e-12 Score=149.49 Aligned_cols=77 Identities=25% Similarity=0.306 Sum_probs=72.7
Q ss_pred CCCChHHHHHHHHHHHhccC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCC
Q 005205 594 LKLSGGEKQRVALARAFLKA----PPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENG 669 (709)
Q Consensus 594 ~~LSGGQrQRiaIARAll~~----p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G 669 (709)
..|||||+||++|||+++.. |++|||||||++||+.+...+.+.|+++.+++|+|+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 47899999999999999875 69999999999999999999999999988899999999999999999999999987
Q ss_pred E
Q 005205 670 K 670 (709)
Q Consensus 670 ~ 670 (709)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 5
No 428
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.32 E-value=7.9e-12 Score=126.35 Aligned_cols=136 Identities=17% Similarity=0.145 Sum_probs=92.7
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhc--CCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCc--hh
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR--SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN--DT 548 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~r--ly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~--gT 548 (709)
.|-+|+++.=..+.+++|+||+|+||||+++.+.. .. ++.|...... ...++|..|...-++ .|
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 45566665422237899999999999999999973 23 5667655432 235777777643321 12
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 005205 549 IFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDS 628 (709)
Q Consensus 549 IreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~ 628 (709)
+.+++ ..| --+-||+++|+++..+|+++|||||++++|+
T Consensus 85 i~~~~---------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~ 123 (213)
T cd03281 85 VSSGQ---------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDT 123 (213)
T ss_pred hhhcc---------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCH
Confidence 22211 001 2345999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHhcC----CCeEEEEecCchHHhhcC
Q 005205 629 TTEAEI-LNALKSLAN----NRTSIFIAHRLTTAMQCD 661 (709)
Q Consensus 629 ~tE~~I-~~~L~~l~~----~~TvIvIaHRlsti~~aD 661 (709)
.....+ .+.++++.+ +.++|++||.++.++...
T Consensus 124 ~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 124 EDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 764444 445666542 248999999999887753
No 429
>PRK10869 recombination and repair protein; Provisional
Probab=99.32 E-value=5.2e-12 Score=144.63 Aligned_cols=77 Identities=23% Similarity=0.311 Sum_probs=72.4
Q ss_pred CCCChHHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCC
Q 005205 594 LKLSGGEKQRVALARAFLK----APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENG 669 (709)
Q Consensus 594 ~~LSGGQrQRiaIARAll~----~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G 669 (709)
..+||||+||++|||+++. +|+++||||||++||..+...+.+.|+++.+++|+|+|||.+..+..||++++++++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 4689999999999999996 689999999999999999999999999998889999999999999999999999985
Q ss_pred E
Q 005205 670 K 670 (709)
Q Consensus 670 ~ 670 (709)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 4
No 430
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.31 E-value=5.9e-12 Score=148.77 Aligned_cols=144 Identities=19% Similarity=0.249 Sum_probs=99.6
Q ss_pred eEEEEeEEEEecCCccccee-----eeeEeeCC-cEEEEEcCCCccHHHHHHHHhcC-CCCCCCEEEECCEeCCCCCHHH
Q 005205 458 SIQFDNVHFSYLTERKILDG-----VSFVVPAG-KSVAIVGTSGSGKSTILRLLFRS-FDTHSGSIRIDGQDICEVTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~-----isl~I~~G-e~vaIVG~SGsGKSTL~~LL~rl-y~p~~G~I~idG~di~~~~~~~ 530 (709)
.|.++++.. |++++ +|+++.++ +.++|+||+|+||||++|.+.+. +.+..|.
T Consensus 295 ~i~l~~~rh------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------------- 353 (771)
T TIGR01069 295 KIILENARH------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------------- 353 (771)
T ss_pred CEEEccccC------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---------------
Confidence 577777653 34433 68888877 99999999999999999999987 3444441
Q ss_pred hhcceEEEcCCCC-CCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 005205 531 LRKSIGVVPQDTV-LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 531 lR~~i~~V~Q~~~-LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
+||.... .+ .+.+++. . ...++ + .+.++-.+||+|++|+..|+++
T Consensus 354 ------~Vpa~~~~~~--~~~d~i~-~--~i~~~------------~-----------si~~~LStfS~~m~~~~~il~~ 399 (771)
T TIGR01069 354 ------PIPANEHSEI--PYFEEIF-A--DIGDE------------Q-----------SIEQNLSTFSGHMKNISAILSK 399 (771)
T ss_pred ------CccCCccccc--cchhhee-e--ecChH------------h-----------HHhhhhhHHHHHHHHHHHHHHh
Confidence 4444331 11 1222321 1 01111 0 1123346799999999999998
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhc-CCCeEEEEecCchHH
Q 005205 610 FLKAPPILLCDEATSALDSTTEAEILN-ALKSLA-NNRTSIFIAHRLTTA 657 (709)
Q Consensus 610 ll~~p~ILILDEaTSaLD~~tE~~I~~-~L~~l~-~~~TvIvIaHRlsti 657 (709)
+ .+|+++|||||++++|+..-..+.. .++.+. +++++|++||....-
T Consensus 400 ~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 400 T-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 7 7899999999999999999988854 344443 578999999997653
No 431
>PRK13695 putative NTPase; Provisional
Probab=99.27 E-value=5.3e-12 Score=123.59 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=65.1
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCC--CCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeC
Q 005205 591 ERGLKLSGGEKQRVALARAFLKAPPILLCDEA--TSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLEN 668 (709)
Q Consensus 591 e~G~~LSGGQrQRiaIARAll~~p~ILILDEa--TSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~ 668 (709)
.....+||+++-++.+++..+++|+++++||+ +..+|....+.+.+.+ ..++++|+++|.-..-..+|+|..+.+
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPG 150 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCC
Confidence 33456999999999999999999999999994 4455554444444444 257999999999766678999999999
Q ss_pred CEEEEe
Q 005205 669 GKVIEQ 674 (709)
Q Consensus 669 G~Ive~ 674 (709)
|+|++.
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 999976
No 432
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.26 E-value=1e-11 Score=132.59 Aligned_cols=144 Identities=17% Similarity=0.238 Sum_probs=104.4
Q ss_pred eeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCC
Q 005205 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR 557 (709)
Q Consensus 478 isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~ 557 (709)
+++.+++|+.++|+|++||||||+++.|+++++|..|.+.++ |..++.+.. ++.+.++.|... -+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~~-----------~~~ 202 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKGG-----------QGL 202 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCCC-----------CCc
Confidence 457788999999999999999999999999999999998885 455554432 333443332100 011
Q ss_pred CCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 005205 558 LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNA 637 (709)
Q Consensus 558 ~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~ 637 (709)
...+.+ =.++++|-.+|+++++||+.+ .+ +.+.
T Consensus 203 ~~~~~~----------------------------------------~~l~~~Lr~~pd~ii~gE~r~---~e----~~~~ 235 (308)
T TIGR02788 203 AKVTPK----------------------------------------DLLQSCLRMRPDRIILGELRG---DE----AFDF 235 (308)
T ss_pred CccCHH----------------------------------------HHHHHHhcCCCCeEEEeccCC---HH----HHHH
Confidence 112222 234556778999999999996 22 3444
Q ss_pred HHHhcCC-CeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhh
Q 005205 638 LKSLANN-RTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 638 L~~l~~~-~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
++....| .+++...|-.+.....||+..|..|+++..|..+|.+.
T Consensus 236 l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 236 IRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred HHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHHH
Confidence 5554445 46799999999888899999999999999998888873
No 433
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.25 E-value=5e-12 Score=125.08 Aligned_cols=77 Identities=18% Similarity=0.111 Sum_probs=56.1
Q ss_pred CCCCCCChHHHHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHH-HHHhc--CCCeEEEEecCchHHhhcCeEEE
Q 005205 591 ERGLKLSGGEKQRVALARAFLK--APPILLCDEATSALDSTTEAEILNA-LKSLA--NNRTSIFIAHRLTTAMQCDEIIV 665 (709)
Q Consensus 591 e~G~~LSGGQrQRiaIARAll~--~p~ILILDEaTSaLD~~tE~~I~~~-L~~l~--~~~TvIvIaHRlsti~~aD~Iiv 665 (709)
++-..||+|++| +++++.. +|+++|+||||+++|+.....+... ++.+. .++|+|++||.....+.+|+---
T Consensus 57 ~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~ 133 (185)
T smart00534 57 QGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPG 133 (185)
T ss_pred ccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCcc
Confidence 344678888887 4555544 9999999999999999977776544 45544 37899999999987777875333
Q ss_pred EeCCE
Q 005205 666 LENGK 670 (709)
Q Consensus 666 l~~G~ 670 (709)
+++++
T Consensus 134 v~~~~ 138 (185)
T smart00534 134 VRNLH 138 (185)
T ss_pred ceEEE
Confidence 34443
No 434
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.24 E-value=3.5e-11 Score=129.62 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecCCcccce-----------eeeeEeeCCcEEEEEcC
Q 005205 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILD-----------GVSFVVPAGKSVAIVGT 493 (709)
Q Consensus 425 ~~~~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~-----------~isl~I~~Ge~vaIVG~ 493 (709)
++..+.+|++++++.++.... .+ ....+.|+|+||+|.||+++++|+ |+++.|.+||+++||||
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~----~~-e~~~~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~ 176 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGD----DP-EKAKNRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAP 176 (415)
T ss_pred eccccHhHHHHHhCCCccCCC----Cc-cccCCCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECC
Confidence 345678999999988664211 11 122468999999999998778997 99999999999999999
Q ss_pred CCccHHHHHHHHhcCCCCC
Q 005205 494 SGSGKSTILRLLFRSFDTH 512 (709)
Q Consensus 494 SGsGKSTL~~LL~rly~p~ 512 (709)
+|||||||+++|.+.+...
T Consensus 177 ~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 177 PKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCChhHHHHHHHHhhccc
Confidence 9999999999999998654
No 435
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.20 E-value=2.2e-10 Score=117.29 Aligned_cols=158 Identities=18% Similarity=0.273 Sum_probs=91.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHH-HHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTI-LRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL-~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
.|.+++++..+++ -+++|+.+.|+|++||||||+ .+++.++.++.+..+++.. +.+.++
T Consensus 7 ~~~~~~ld~~l~g----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~----e~~~~~------ 66 (230)
T PRK08533 7 ELSRDELHKRLGG----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST----QLTTTE------ 66 (230)
T ss_pred EEEEeeeehhhCC----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC----CCCHHH------
Confidence 3556666655543 389999999999999999999 5899988765544444432 111111
Q ss_pred EEcCCCCCCchhHHHHH-HcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc----
Q 005205 537 VVPQDTVLFNDTIFHNI-RYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL---- 611 (709)
Q Consensus 537 ~V~Q~~~LF~gTIreNI-~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll---- 611 (709)
+.++. .+|- +.+ +++.. +.+. .+ +--..+|+++.++-.+++.+-
T Consensus 67 ------------~~~~~~~~g~---~~~------------~~~~~--~~l~-~~-~~~~~~~~~~~~~~~l~~il~~~~~ 115 (230)
T PRK08533 67 ------------FIKQMMSLGY---DIN------------KKLIS--GKLL-YI-PVYPLLSGNSEKRKFLKKLMNTRRF 115 (230)
T ss_pred ------------HHHHHHHhCC---chH------------HHhhc--CcEE-EE-EecccccChHHHHHHHHHHHHHHHh
Confidence 12221 1221 011 11110 0000 00 000235666666555554433
Q ss_pred cCCCEEEEeCCCCCC----CHHHHHHHHHHHHHhcC-CCeEEEEecCchHH--------h-hcCeEEEEe
Q 005205 612 KAPPILLCDEATSAL----DSTTEAEILNALKSLAN-NRTSIFIAHRLTTA--------M-QCDEIIVLE 667 (709)
Q Consensus 612 ~~p~ILILDEaTSaL----D~~tE~~I~~~L~~l~~-~~TvIvIaHRlsti--------~-~aD~Iivl~ 667 (709)
.+|+++++||||+.+ |+...+.+.+.++.+.+ ++|+++ +|....+ + -||-|+.|+
T Consensus 116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 369999999999999 77766778888877643 666655 5554432 1 158888876
No 436
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.19 E-value=5e-11 Score=120.84 Aligned_cols=139 Identities=15% Similarity=0.154 Sum_probs=85.8
Q ss_pred CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhc-CCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhH
Q 005205 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR-SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTI 549 (709)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~r-ly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTI 549 (709)
++++.+|++|++++|++++|.||+|+||||+++.+.+ .+.++.|.....- .-.+++.+|=- ..-..
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-----------~~~~~~~~~i~--~~~~~ 83 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-----------SATLSIFDSVL--TRMGA 83 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-----------ceEEeccceEE--EEecC
Confidence 3578999999999999999999999999999999999 7788888765432 11233333211 11111
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC---CCCC
Q 005205 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEA---TSAL 626 (709)
Q Consensus 550 reNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEa---TSaL 626 (709)
.|++.-|.. .-..|+.+..+. + .-..+|+++||||| |+.+
T Consensus 84 ~d~~~~~~S-tF~~e~~~~~~i------l------------------------------~~~~~~sLvllDE~~~gT~~~ 126 (222)
T cd03287 84 SDSIQHGMS-TFMVELSETSHI------L------------------------------SNCTSRSLVILDELGRGTSTH 126 (222)
T ss_pred ccccccccc-hHHHHHHHHHHH------H------------------------------HhCCCCeEEEEccCCCCCChh
Confidence 222211111 011222222111 1 12357999999998 4555
Q ss_pred CHHHH-HHHHHHHHHhcCCCeEEEEecCchHHhhc
Q 005205 627 DSTTE-AEILNALKSLANNRTSIFIAHRLTTAMQC 660 (709)
Q Consensus 627 D~~tE-~~I~~~L~~l~~~~TvIvIaHRlsti~~a 660 (709)
|..+. ..+.+.+.+. .++|+|++||.+......
T Consensus 127 d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 127 DGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred hHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 55442 3455555543 478999999998875544
No 437
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=2.8e-10 Score=124.13 Aligned_cols=63 Identities=29% Similarity=0.284 Sum_probs=57.0
Q ss_pred CCCChHHHHHHHHHHHhcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh
Q 005205 594 LKLSGGEKQRVALARAFLK---------APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM 658 (709)
Q Consensus 594 ~~LSGGQrQRiaIARAll~---------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~ 658 (709)
..+|.||+++++||.+|.. +||||+||||+|.||+..-+.+.+.|.+. +.++++++|.+..+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 3689999999999999999 99999999999999999999999999764 679999999987654
No 438
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.19 E-value=8.8e-11 Score=133.30 Aligned_cols=108 Identities=26% Similarity=0.419 Sum_probs=91.9
Q ss_pred HHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEec
Q 005205 576 DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP--PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAH 652 (709)
Q Consensus 576 ~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaH 652 (709)
+|+.+.--||=|. ...-.+|||||.|||-||+.+-..= =++|||||+.+|-+.--.++.++|+++. .|.|+|+|-|
T Consensus 463 ~fL~~VGL~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEH 541 (935)
T COG0178 463 GFLVDVGLGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEH 541 (935)
T ss_pred HHHHHcCcCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEec
Confidence 4555555556553 4455799999999999999997663 4789999999999988888888888876 5899999999
Q ss_pred CchHHhhcCeEEEE------eCCEEEEecChHHHhhcc
Q 005205 653 RLTTAMQCDEIIVL------ENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 653 Rlsti~~aD~Iivl------~~G~Ive~Gth~eLl~~~ 684 (709)
+..||+.||+|+-| ..|+||.+||++|+|+..
T Consensus 542 Dedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 542 DEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred CHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 99999999999988 479999999999999875
No 439
>PRK14079 recF recombination protein F; Provisional
Probab=99.15 E-value=2.7e-10 Score=123.69 Aligned_cols=75 Identities=25% Similarity=0.295 Sum_probs=61.7
Q ss_pred CCCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEE
Q 005205 594 LKLSGGEKQRVALARAFL---------KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEII 664 (709)
Q Consensus 594 ~~LSGGQrQRiaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Ii 664 (709)
.-+|+||++++++|+.|. .+|||++||||+|.||......+.+.|.+.. .+.|.-++ .-..+|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~---~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE---APPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC---CCCCCceEE
Confidence 357999999999999998 8999999999999999999999998886532 34444333 345689999
Q ss_pred EEeCCEEEE
Q 005205 665 VLENGKVIE 673 (709)
Q Consensus 665 vl~~G~Ive 673 (709)
++++|++.-
T Consensus 337 ~~~~~~~~~ 345 (349)
T PRK14079 337 RIEAGVFTP 345 (349)
T ss_pred EEeccEecC
Confidence 999998753
No 440
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.13 E-value=7.7e-12 Score=145.96 Aligned_cols=163 Identities=12% Similarity=0.126 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHchHHHHHHhcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005205 316 NDASTRAIDSLINYETVKYFNNEAFEAEQY-----DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGIL 390 (709)
Q Consensus 316 ~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~ 390 (709)
....+.+.|.+.++.+||..+.|......| .....+..+...+..........+...+......+++++|.++++
T Consensus 40 ~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~ 119 (644)
T PRK10733 40 EVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFF 119 (644)
T ss_pred HHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778888999999999887766555 444444444433332222222222233334455666778999999
Q ss_pred cCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEE
Q 005205 391 SGEMTVG---DLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFS 467 (709)
Q Consensus 391 ~g~ltvG---~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~ 467 (709)
.|.|+.| .+++|..+...+..| ..+...+..+.......+|+.++.+...+..
T Consensus 120 ~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~----------------------- 175 (644)
T PRK10733 120 MRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPS----------------------- 175 (644)
T ss_pred HhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH-----------------------
Confidence 9999999 888888877777777 5566666677666677777777665321100
Q ss_pred ecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 468 YLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 468 Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
..+++...+++| +.|+||+|+||||+++.+++...
T Consensus 176 ------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 176 ------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred ------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 001122356677 99999999999999999988553
No 441
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.13 E-value=3.5e-10 Score=134.25 Aligned_cols=150 Identities=18% Similarity=0.156 Sum_probs=95.7
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE-EEcCCCCCCchhHHH
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG-VVPQDTVLFNDTIFH 551 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~-~V~Q~~~LF~gTIre 551 (709)
.|=+|+++. +.+..+.|.||+++||||+++.+.-. .+-.++| +||-+.. ..-++.+
T Consensus 316 ~Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~---------------------~~maq~G~~vpa~~~-~~i~~~~ 372 (782)
T PRK00409 316 VVPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLA---------------------ALMAKSGLPIPANEP-SEIPVFK 372 (782)
T ss_pred eECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHH---------------------HHHHHhCCCcccCCC-ccccccc
Confidence 344455543 34567999999999999999988521 1222333 4444310 0112223
Q ss_pred HHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 005205 552 NIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTE 631 (709)
Q Consensus 552 NI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE 631 (709)
+|.. + . |.+-.+.++-..+|+|++|+..|+|++ .+|+++|||||++++|+..-
T Consensus 373 ~i~~-~--i-----------------------g~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg 425 (782)
T PRK00409 373 EIFA-D--I-----------------------GDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEG 425 (782)
T ss_pred eEEE-e--c-----------------------CCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHH
Confidence 3311 0 0 111112234468999999999999999 89999999999999999988
Q ss_pred HHHHHH-HHHhc-CCCeEEEEecCchHHhhcCeEEEEeCCEEE
Q 005205 632 AEILNA-LKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGKVI 672 (709)
Q Consensus 632 ~~I~~~-L~~l~-~~~TvIvIaHRlsti~~aD~Iivl~~G~Iv 672 (709)
..+..+ ++.+. +++|+|++||.......+.....+.++.+.
T Consensus 426 ~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~ 468 (782)
T PRK00409 426 AALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVE 468 (782)
T ss_pred HHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEE
Confidence 877654 44432 578999999998876654332233455553
No 442
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.10 E-value=4.8e-11 Score=130.51 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=56.5
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCC-EEEECCEeCCCCCHHHhhcceEEEcCCC
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-SIRIDGQDICEVTLESLRKSIGVVPQDT 542 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G-~I~idG~di~~~~~~~lR~~i~~V~Q~~ 542 (709)
++|++|||++++||.++|+||||||||||++ .++.+|++| +|.+||.++...+..+++..= +|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 6899999999999999999999999999999 778888888 799999999876654433222 888854
No 443
>PRK01156 chromosome segregation protein; Provisional
Probab=99.09 E-value=2.2e-10 Score=139.93 Aligned_cols=76 Identities=25% Similarity=0.309 Sum_probs=67.2
Q ss_pred CCCCCChHHHHHHHH------HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C--C-CeEEEEecCchHHhhcC
Q 005205 592 RGLKLSGGEKQRVAL------ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-N--N-RTSIFIAHRLTTAMQCD 661 (709)
Q Consensus 592 ~G~~LSGGQrQRiaI------ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~--~-~TvIvIaHRlsti~~aD 661 (709)
....||||||||+|| ||+++.+|++++|||||++||+.+...+.+.|.... . + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 599999999999999999999999999988886432 2 2 58999999999999999
Q ss_pred eEEEEe
Q 005205 662 EIIVLE 667 (709)
Q Consensus 662 ~Iivl~ 667 (709)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999998
No 444
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.09 E-value=5.8e-10 Score=122.53 Aligned_cols=167 Identities=18% Similarity=0.194 Sum_probs=118.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.++-++++-.|..+..+++++ |++.+||+++|+|++|+|||||++.|+|.++|+.|.|.+.|..-
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg-------------- 194 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG-------------- 194 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc--------------
Confidence 356667776676556788885 99999999999999999999999999999999998877666432
Q ss_pred EcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc------
Q 005205 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL------ 611 (709)
Q Consensus 538 V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll------ 611 (709)
.+++|.+.. .++..++. .|.+=-.-.+-|.|+|+|.+.+.+.+
T Consensus 195 ---------~ev~e~~~~------------~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~ 243 (432)
T PRK06793 195 ---------REVKDFIRK------------ELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFRD 243 (432)
T ss_pred ---------ccHHHHHHH------------Hhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 233443321 01100110 12222345678999999999999888
Q ss_pred -cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEEeCCEEEEec
Q 005205 612 -KAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQG 675 (709)
Q Consensus 612 -~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~G 675 (709)
.++-+|++||+|...|+. +.|-..+.+.. .|.|..+-+|-.+..+.|-+ .++|.|...+
T Consensus 244 ~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~ 304 (432)
T PRK06793 244 QGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIY 304 (432)
T ss_pred cCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEE
Confidence 789999999999999997 45655666655 56788877883334444544 4788876544
No 445
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.09 E-value=2.5e-10 Score=121.00 Aligned_cols=171 Identities=24% Similarity=0.290 Sum_probs=114.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEE--C---------CEeCCCCC----HHHhhcc--eEEEcCCCCCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI--D---------GQDICEVT----LESLRKS--IGVVPQDTVLF 545 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~i--d---------G~di~~~~----~~~lR~~--i~~V~Q~~~LF 545 (709)
.||+..++||.+|-||||-++.|+|-.+|.-|.--- | |-.+..+- .+.++.- .-||.|=|-.-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 689999999999999999999999999998775210 1 11111110 1111111 12344444444
Q ss_pred chhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 005205 546 NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSA 625 (709)
Q Consensus 546 ~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSa 625 (709)
.|++.+++.--...-+ ..++++.-++.... ...-..||||+-||.|||-+.++++++.++|||.|-
T Consensus 178 k~~v~~~l~~~~~r~~---~~~~~~~~~L~~~~-----------~re~~~lsggelqrfaia~~~vq~advyMFDEpSsY 243 (592)
T KOG0063|consen 178 KGTVGSLLDRKDERDN---KEEVCDQLDLNNLL-----------DREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSY 243 (592)
T ss_pred HHHHHHHHHHHhhccc---HHHHHHHHHHhhHH-----------HhhhhhcccchhhhhhhhhhhhhhcceeEecCCccc
Confidence 5566665532211112 22333333332222 223357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEe
Q 005205 626 LDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLE 667 (709)
Q Consensus 626 LD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~ 667 (709)
||-...-.--..|+.+. .++-+|+|-|+||.+.. .|-|.++-
T Consensus 244 LDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 244 LDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred chHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 99987776667777664 57899999999998875 67777764
No 446
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.09 E-value=8.5e-10 Score=108.86 Aligned_cols=84 Identities=18% Similarity=0.107 Sum_probs=62.2
Q ss_pred CccccccCCCCCCChHHHH-----HHHHHH-HhccCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhc-CCCeEEEEecC
Q 005205 584 KYSTVVGERGLKLSGGEKQ-----RVALAR-AFLKAPPILLCDEATSALD---STTEAEILNALKSLA-NNRTSIFIAHR 653 (709)
Q Consensus 584 G~dT~vGe~G~~LSGGQrQ-----RiaIAR-All~~p~ILILDEaTSaLD---~~tE~~I~~~L~~l~-~~~TvIvIaHR 653 (709)
|....+......+|+||+| +..+.+ +.-.+|+++|+||||+.+| ......+.+.++.+. .+.|+|+++|.
T Consensus 60 g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~ 139 (187)
T cd01124 60 GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444455566788999999 344444 4556899999999999999 666666766665543 47899999998
Q ss_pred chH---------H-hhcCeEEEEe
Q 005205 654 LTT---------A-MQCDEIIVLE 667 (709)
Q Consensus 654 lst---------i-~~aD~Iivl~ 667 (709)
... + ..||.|+.|+
T Consensus 140 ~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 140 SGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred ccCCCcccCcCceeEeeeEEEEEE
Confidence 764 3 3489999997
No 447
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.07 E-value=2.9e-10 Score=113.70 Aligned_cols=119 Identities=25% Similarity=0.275 Sum_probs=78.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCC-CCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHH
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEV 565 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly~p~-~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei 565 (709)
.+.|+||+||||||+++.|++.+++. .|.|..-+.++. +... ...+++.|.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~------------------------ 54 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQR------------------------ 54 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---Cccceeeec------------------------
Confidence 58899999999999999999888754 567665443432 1110 011122221
Q ss_pred HHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCC
Q 005205 566 YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR 645 (709)
Q Consensus 566 ~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~ 645 (709)
.+|+....++. ++++|+..+|+++++||+. |.++-..+ ++....|.
T Consensus 55 ----------------------~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~---l~~a~~G~ 100 (198)
T cd01131 55 ----------------------EVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLA---LTAAETGH 100 (198)
T ss_pred ----------------------ccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHH---HHHHHcCC
Confidence 11111111211 4889999999999999996 66654433 44444689
Q ss_pred eEEEEecCchHHhhcCeEEEEe
Q 005205 646 TSIFIAHRLTTAMQCDEIIVLE 667 (709)
Q Consensus 646 TvIvIaHRlsti~~aD~Iivl~ 667 (709)
+++.++|..+.....||++.|-
T Consensus 101 ~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 101 LVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred EEEEEecCCcHHHHHhHHHhhc
Confidence 9999999999888888887663
No 448
>PRK03918 chromosome segregation protein; Provisional
Probab=99.05 E-value=3.4e-10 Score=138.24 Aligned_cols=75 Identities=25% Similarity=0.350 Sum_probs=67.5
Q ss_pred CCCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEE
Q 005205 594 LKLSGGEKQ------RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL 666 (709)
Q Consensus 594 ~~LSGGQrQ------RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl 666 (709)
..|||||+| |+||||+++.+|+++||||||++||+.+...+.+.|..+. .+.|+|+|||+......||+|++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 479999999 5667778999999999999999999999999999998764 357999999999999899999999
Q ss_pred eC
Q 005205 667 EN 668 (709)
Q Consensus 667 ~~ 668 (709)
++
T Consensus 867 ~~ 868 (880)
T PRK03918 867 SL 868 (880)
T ss_pred Ee
Confidence 83
No 449
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.05 E-value=2.4e-09 Score=128.33 Aligned_cols=67 Identities=28% Similarity=0.404 Sum_probs=58.9
Q ss_pred hccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhc-CCCeEEEEecCchHH----------hhcCeEEEEeCCEEEEecC
Q 005205 610 FLKAPPILLCDEATSAL-DSTTEAEILNALKSLA-NNRTSIFIAHRLTTA----------MQCDEIIVLENGKVIEQGS 676 (709)
Q Consensus 610 ll~~p~ILILDEaTSaL-D~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti----------~~aD~Iivl~~G~Ive~Gt 676 (709)
+..+|+++++|||+++| |+.+.+.|.+.+++.. ++.+++++||.++.+ ..||..++|.+|++.+.|+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 35899999999999999 6999999999988764 578999999999887 4799999999999987764
No 450
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.04 E-value=3.2e-10 Score=142.44 Aligned_cols=75 Identities=33% Similarity=0.413 Sum_probs=68.8
Q ss_pred CCCCCChHHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEE
Q 005205 592 RGLKLSGGEKQRVALARAF----LKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVL 666 (709)
Q Consensus 592 ~G~~LSGGQrQRiaIARAl----l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl 666 (709)
....||||||||++|||++ +++||++||||||++||+.+...+.+.|+.+.++.|+|+|||+++.+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 3457999999999999998 57889999999999999999999999999887789999999999999999999754
No 451
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.02 E-value=3.7e-10 Score=113.49 Aligned_cols=78 Identities=29% Similarity=0.442 Sum_probs=66.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC------------CCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHH
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIr 550 (709)
++|++++|+||||||||||+++|++.++ |..|+ ++|+|+..++.+++++.+ .|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 6899999999999999999999999986 88899 699999999999998854 688899999999
Q ss_pred HHHHcCCCCCCHHHHHHHH
Q 005205 551 HNIRYGRLSATEEEVYDAA 569 (709)
Q Consensus 551 eNI~~g~~~~s~~ei~~A~ 569 (709)
+| .||. +.+++.+++
T Consensus 78 ~~-~y~~---~~~~i~~~l 92 (205)
T PRK00300 78 GN-YYGT---PRSPVEEAL 92 (205)
T ss_pred Cc-cccC---cHHHHHHHH
Confidence 99 4764 355554444
No 452
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.00 E-value=1.3e-09 Score=104.17 Aligned_cols=129 Identities=15% Similarity=0.119 Sum_probs=78.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHH
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY 566 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~ 566 (709)
.+.|.|++|+||||+++.+++...+..|.|.+-+ ++...- .+.++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-------------------~e~~~~--~~~~~~~~~---------- 49 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD-------------------IEEEIE--ELTERLIGE---------- 49 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE-------------------CCcchH--HHHHHHhhh----------
Confidence 3789999999999999999998877666655433 322110 011111000
Q ss_pred HHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH----------HHHHHH
Q 005205 567 DAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTT----------EAEILN 636 (709)
Q Consensus 567 ~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~t----------E~~I~~ 636 (709)
. ....+++. ..+.......+.++.++++.+++.-.+|+++|+||+++-+|... .+.+.+
T Consensus 50 --------~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (165)
T cd01120 50 --------S--LKGALDNL-IIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRE 118 (165)
T ss_pred --------h--hccccccE-EEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 0 00011111 12222223345566668899999999999999999996655543 344444
Q ss_pred HHHHhc-CCCeEEEEecCchHH
Q 005205 637 ALKSLA-NNRTSIFIAHRLTTA 657 (709)
Q Consensus 637 ~L~~l~-~~~TvIvIaHRlsti 657 (709)
.++... .+.|+|+++|..+..
T Consensus 119 l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 119 LLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHhcCCceEEEEEecCCcc
Confidence 443433 378999999987654
No 453
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.00 E-value=1.7e-08 Score=93.06 Aligned_cols=117 Identities=39% Similarity=0.496 Sum_probs=88.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCC-CEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCH
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHS-GSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATE 562 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~-G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~ 562 (709)
+|..+.|+||+||||||+++.|++.+.... +.+.++.....+.......
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478899999999999999999999887665 6677776544433322222
Q ss_pred HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH------
Q 005205 563 EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILN------ 636 (709)
Q Consensus 563 ~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~------ 636 (709)
.....+......+++.++..+++|-..+|.++++||+....+.........
T Consensus 51 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~ 107 (148)
T smart00382 51 -----------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107 (148)
T ss_pred -----------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence 233344556778899999999999998899999999999999998887664
Q ss_pred -HHHHhcCCCeEEEEecC
Q 005205 637 -ALKSLANNRTSIFIAHR 653 (709)
Q Consensus 637 -~L~~l~~~~TvIvIaHR 653 (709)
.......+..+|..+|.
T Consensus 108 ~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 108 LLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHhcCCCEEEEEeCC
Confidence 23334456778888883
No 454
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.99 E-value=1.1e-09 Score=135.50 Aligned_cols=76 Identities=22% Similarity=0.253 Sum_probs=68.9
Q ss_pred CCCChHHHHHHHHHHHhcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cC
Q 005205 594 LKLSGGEKQRVALARAFLK----------APPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CD 661 (709)
Q Consensus 594 ~~LSGGQrQRiaIARAll~----------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD 661 (709)
.+|||||++|++||+||.. +|++|+|||||++||+++-..+.+.|+++. .|+||++|||....... +|
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~~ 1028 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIPH 1028 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhCC
Confidence 6899999999999999985 799999999999999999999999998874 57899999999987665 89
Q ss_pred eEEEEeCC
Q 005205 662 EIIVLENG 669 (709)
Q Consensus 662 ~Iivl~~G 669 (709)
+|+|++.|
T Consensus 1029 ~i~v~~~~ 1036 (1042)
T TIGR00618 1029 RILVKKTN 1036 (1042)
T ss_pred EEEEEECC
Confidence 99999754
No 455
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.96 E-value=1.2e-09 Score=137.25 Aligned_cols=86 Identities=23% Similarity=0.280 Sum_probs=75.0
Q ss_pred CCccccccCCC------CCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEec
Q 005205 583 AKYSTVVGERG------LKLSGGEKQRVALARAFL----KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAH 652 (709)
Q Consensus 583 ~G~dT~vGe~G------~~LSGGQrQRiaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaH 652 (709)
.|++..|...| ..||||||++++||++|. ++||++|||||+++||+.....+.+.|..+.++.++|+|||
T Consensus 1056 ~~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~ 1135 (1164)
T TIGR02169 1056 GGLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSL 1135 (1164)
T ss_pred CCeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 35555554444 379999999999999997 57899999999999999999999999999888889999999
Q ss_pred CchHHhhcCeEEEEeC
Q 005205 653 RLTTAMQCDEIIVLEN 668 (709)
Q Consensus 653 Rlsti~~aD~Iivl~~ 668 (709)
+..++..||+++.+..
T Consensus 1136 ~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1136 RSPMIEYADRAIGVTM 1151 (1164)
T ss_pred cHHHHHhcceeEeEEE
Confidence 9999999999987753
No 456
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.84 E-value=6.8e-09 Score=114.30 Aligned_cols=85 Identities=26% Similarity=0.368 Sum_probs=72.8
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEEC---CEeCCCCCHHH---
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID---GQDICEVTLES--- 530 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~id---G~di~~~~~~~--- 530 (709)
+.++.++|+..|..+..+++.++ +|.+||+++|+|+||||||||++.|+++.+|+.|.|.+. |.++.++..+.
T Consensus 138 ~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~ 216 (450)
T PRK06002 138 PAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLAD 216 (450)
T ss_pred CCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHH
Confidence 46899999999987778999996 999999999999999999999999999999999999885 57776655433
Q ss_pred -hhcceEEEcCCC
Q 005205 531 -LRKSIGVVPQDT 542 (709)
Q Consensus 531 -lR~~i~~V~Q~~ 542 (709)
+++.|++|+|..
T Consensus 217 ~r~rtI~vV~qsd 229 (450)
T PRK06002 217 NLKKAVAVVATSD 229 (450)
T ss_pred hhCCeEEEEEcCC
Confidence 336799999965
No 457
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.83 E-value=3.1e-08 Score=101.80 Aligned_cols=148 Identities=17% Similarity=0.205 Sum_probs=87.7
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHh-cCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHH-HcCCC
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLF-RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNI-RYGRL 558 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~-rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI-~~g~~ 558 (709)
-+++|+.+.|.|++|||||||+..++ +... ..+ .+.|+..|-.. ..+.+|. .+|-
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~-------------------~~~y~~~e~~~--~~~~~~~~~~g~- 77 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGK-------------------KVYVITTENTS--KSYLKQMESVKI- 77 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCC-------------------EEEEEEcCCCH--HHHHHHHHHCCC-
Confidence 58999999999999999999998875 2222 222 34444443211 1233332 2221
Q ss_pred CCCHHHHHHHHHHHchHHHHHhCCCCcccccc---CCCCCCChHHHHHHHHHHHhcc--CCCEEEEeCCCCCCC---HHH
Q 005205 559 SATEEEVYDAARRAAIHDTIMNFPAKYSTVVG---ERGLKLSGGEKQRVALARAFLK--APPILLCDEATSALD---STT 630 (709)
Q Consensus 559 ~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vG---e~G~~LSGGQrQRiaIARAll~--~p~ILILDEaTSaLD---~~t 630 (709)
+. .+++. .|+-..+. ++-...|.++++.+...+..++ +|+++|+||+|+.+| .+.
T Consensus 78 --~~------------~~~~~---~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~ 140 (234)
T PRK06067 78 --DI------------SDFFL---WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDD 140 (234)
T ss_pred --Ch------------hHHHh---CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHH
Confidence 11 11110 11111110 1223456789999999999998 999999999996544 433
Q ss_pred HHHHHHHHHHh-cCCCeEEEEecCchH-------H-hhcCeEEEEeC
Q 005205 631 EAEILNALKSL-ANNRTSIFIAHRLTT-------A-MQCDEIIVLEN 668 (709)
Q Consensus 631 E~~I~~~L~~l-~~~~TvIvIaHRlst-------i-~~aD~Iivl~~ 668 (709)
-..+.+.++.+ .+++|+++++|.... + .-+|-++.|+.
T Consensus 141 ~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 141 ILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 33443445443 357899999997543 2 23577777763
No 458
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.82 E-value=1.6e-08 Score=102.34 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=85.4
Q ss_pred CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC--------CCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCC
Q 005205 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--------FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (709)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl--------y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~ 542 (709)
+++|-+|++|++++|++++|.||+|+||||+++.+... |-|.+- ..++++.
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~------------------~~i~~~~--- 74 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKS------------------MRLSLVD--- 74 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccc------------------cEecccc---
Confidence 45788999999999999999999999999999987643 323211 1122221
Q ss_pred CCCc-hhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 005205 543 VLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDE 621 (709)
Q Consensus 543 ~LF~-gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDE 621 (709)
.+|. -.-.||+..|.... ..|+.+.. +.+. ...+|++++|||
T Consensus 75 ~i~~~~~~~d~~~~~~StF-~~e~~~~~------~il~------------------------------~~~~~sLvLlDE 117 (218)
T cd03286 75 RIFTRIGARDDIMKGESTF-MVELSETA------NILR------------------------------HATPDSLVILDE 117 (218)
T ss_pred EEEEecCcccccccCcchH-HHHHHHHH------HHHH------------------------------hCCCCeEEEEec
Confidence 1121 12233443332111 12222221 1111 124689999999
Q ss_pred CCCCCCHHHHHHHHHH-HHHhcC--CCeEEEEecCchHHhhc
Q 005205 622 ATSALDSTTEAEILNA-LKSLAN--NRTSIFIAHRLTTAMQC 660 (709)
Q Consensus 622 aTSaLD~~tE~~I~~~-L~~l~~--~~TvIvIaHRlsti~~a 660 (709)
+.+++|+.....+..+ ++.+.+ ++++|++||....++..
T Consensus 118 ~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 118 LGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 9999999998888777 565554 79999999998876654
No 459
>PRK02224 chromosome segregation protein; Provisional
Probab=98.81 E-value=8.6e-09 Score=125.86 Aligned_cols=76 Identities=28% Similarity=0.477 Sum_probs=67.1
Q ss_pred CCCChHHHH------HHHHHHHhccC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEecCchHHhh
Q 005205 594 LKLSGGEKQ------RVALARAFLKA-----P-PILLCDEATSALDSTTEAEILNALKSLAN-N-RTSIFIAHRLTTAMQ 659 (709)
Q Consensus 594 ~~LSGGQrQ------RiaIARAll~~-----p-~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~-~TvIvIaHRlsti~~ 659 (709)
..||||||| |+|+||++..+ | +++||||||++||+.....+.+.|..+.. + .++|+|||+...+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999864 2 67999999999999999999998888753 3 489999999999999
Q ss_pred cCeEEEEeCC
Q 005205 660 CDEIIVLENG 669 (709)
Q Consensus 660 aD~Iivl~~G 669 (709)
||++++|++.
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999754
No 460
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.80 E-value=9.1e-09 Score=105.22 Aligned_cols=63 Identities=32% Similarity=0.425 Sum_probs=53.3
Q ss_pred CCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchHH
Q 005205 595 KLSGGEKQRVALARAFLKAP---PILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTA 657 (709)
Q Consensus 595 ~LSGGQrQRiaIARAll~~p---~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRlsti 657 (709)
.+|.|+||.+.|+-+++..+ .++++|||-++|+|...+.+.+.|+...+ +.-+|+.||.+..+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 45999999999998888777 89999999999999999999999988776 78899999998654
No 461
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.78 E-value=0.00015 Score=79.70 Aligned_cols=225 Identities=10% Similarity=0.080 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 198 LRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYK 277 (709)
Q Consensus 198 ~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (709)
+..++..+...+-...|.+.+.++-++.. .-+ + -..|+++|++........+...++.++++++....++ +.
T Consensus 157 ~~~~~~~~l~irWR~wLT~~yl~~Wl~~r--~ie--n---PDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~IL-W~ 228 (409)
T PRK11098 157 LNNFFVSHYVFRWRTAMNEYYMAHWQKLR--HIE--G---AAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVL-VT 228 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCC--C---ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 44455555666666677777777666553 111 2 2367777765544333334445555554443332222 22
Q ss_pred hhhh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcch-HHHHH
Q 005205 278 FGAP-------------FAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNE-AFEAE 343 (709)
Q Consensus 278 ~~~~-------------l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e-~~~~~ 343 (709)
++.. +.|.+++-.++...+...+.+...++.-+.++..++....+.-.=.+.+ +.| +...+
T Consensus 229 LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE-----~~E~~~L~~ 303 (409)
T PRK11098 229 LSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD-----RATPPTVRE 303 (409)
T ss_pred hccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh-----HHHHHHHHH
Confidence 2222 2222222222222233333333333332233333333222221111111 112 22334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 344 QYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRET 423 (709)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l 423 (709)
+|++..+.+.+...+.. ..... ..........+.+++.+-....|++|.|.+......+.++...++.+...+.++
T Consensus 304 ~F~~V~~N~~rl~~~~~-~l~~f---~~~y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~l 379 (409)
T PRK11098 304 LFSNVRKNYFRLYFHYM-YFNIA---RILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTI 379 (409)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45544444443322222 12222 111112222233334556677999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 005205 424 VQSLVDMKSMFQLLEE 439 (709)
Q Consensus 424 ~~~~~s~~rl~~~l~~ 439 (709)
.+-.+..+|+.++.+.
T Consensus 380 ael~A~~~RL~~F~~~ 395 (409)
T PRK11098 380 VELLSIYKRLRSFEAA 395 (409)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998654
No 462
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.74 E-value=2e-08 Score=123.74 Aligned_cols=75 Identities=33% Similarity=0.287 Sum_probs=63.5
Q ss_pred CCCCChHHHHHHHHHHHhcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCe
Q 005205 593 GLKLSGGEKQRVALARAFLK--------APPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDE 662 (709)
Q Consensus 593 G~~LSGGQrQRiaIARAll~--------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~ 662 (709)
-..|||||+|+++|||||.. +|++|+|||||++||+.+-..+.+.|+.+. .|+||++|||-...... ..+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 37899999999999999995 899999999999999999999999998875 67999999995555444 344
Q ss_pred EEEEe
Q 005205 663 IIVLE 667 (709)
Q Consensus 663 Iivl~ 667 (709)
|.|-.
T Consensus 1027 i~V~k 1031 (1047)
T PRK10246 1027 IKVKK 1031 (1047)
T ss_pred EEEEE
Confidence 55544
No 463
>PRK12369 putative transporter; Reviewed
Probab=98.74 E-value=0.00018 Score=77.33 Aligned_cols=57 Identities=12% Similarity=0.237 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005205 383 VLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEE 439 (709)
Q Consensus 383 ~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~ 439 (709)
++.+-....|++|.|.+......+.++...++.+...+.++.+-.+..+|+.++.+.
T Consensus 265 li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~~ 321 (326)
T PRK12369 265 LIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEKN 321 (326)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566779999999999999999999999999999999999999999999987643
No 464
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.68 E-value=3.2e-07 Score=110.71 Aligned_cols=54 Identities=28% Similarity=0.347 Sum_probs=48.2
Q ss_pred HHHHhccCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh
Q 005205 606 LARAFLKAPPILLCDEATSAL-DSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ 659 (709)
Q Consensus 606 IARAll~~p~ILILDEaTSaL-D~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~ 659 (709)
|+|++..+|+++++|||++.| |+.+.+.+.+.+++.. .+.+++++||.++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 789999999999999999999 7999999999887764 57899999999998765
No 465
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.67 E-value=0.00022 Score=75.32 Aligned_cols=222 Identities=16% Similarity=0.138 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 128 ITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKVA 207 (709)
Q Consensus 128 ~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (709)
+..+++.++.+.+++......+.+.|.+.... .. .+...+...+++.+ ....+.....++...++
T Consensus 30 ~~ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d--~~------~f~~~l~~~~~l~~-------~~~~l~~~~~yl~~~L~ 94 (281)
T PF06472_consen 30 LVLLLLLLARVYLSVRINFWNGDFYNALQQKD--LQ------AFWRLLLLFLLLAI-------ASALLNSILKYLRQRLA 94 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC--HH------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 33334445566677777777788888775421 11 11111111111111 11233444555555666
Q ss_pred HHHHHHHHHHHHHHHHcCCccccc-ccChh---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 005205 208 LRTIRSVSRKVFSHLHELDLRYHL-SRETG---ALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (709)
Q Consensus 208 ~~~~~~lr~~lf~~ll~l~~~~f~-~~~~G---~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 283 (709)
.+....|...+.++.++-. .||. +...+ .--.|+++|++........+..+++..+++++.....+ +..+..+.
T Consensus 95 l~wR~~Lt~~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L-~~~~g~~~ 172 (281)
T PF06472_consen 95 LRWREWLTRHLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVIL-WSISGWLG 172 (281)
T ss_pred HHHHHHHHHHHHHHHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchH
Confidence 6666677777777766666 5554 22223 33478888877665555555556666665554443333 22222222
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 284 W-ITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRS 362 (709)
Q Consensus 284 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 362 (709)
. .+++..++...+...+.+...++..+.++..++....+.....+.+.|-.++.|+.|.++.++..++..+...+....
T Consensus 173 ~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~ 252 (281)
T PF06472_consen 173 PWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRR 252 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222222233333333444444555555566667777778888899999999999999998888777766665554444
Q ss_pred HHHH
Q 005205 363 LAFL 366 (709)
Q Consensus 363 ~~~~ 366 (709)
...+
T Consensus 253 ~~~~ 256 (281)
T PF06472_consen 253 RLRL 256 (281)
T ss_pred HHHH
Confidence 4333
No 466
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.66 E-value=4.5e-08 Score=96.98 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=60.0
Q ss_pred cceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCC--C-chhHH
Q 005205 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL--F-NDTIF 550 (709)
Q Consensus 474 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~L--F-~gTIr 550 (709)
..+=+.+.+++|+.++|+||+||||||+++.|+++++|+.|.|.+.+.+--.++ .+..++++.|.... + .-|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 444566789999999999999999999999999999999999999775433222 24567777765532 2 34777
Q ss_pred HHHHc
Q 005205 551 HNIRY 555 (709)
Q Consensus 551 eNI~~ 555 (709)
+++..
T Consensus 91 ~~l~~ 95 (186)
T cd01130 91 DLLRS 95 (186)
T ss_pred HHHHH
Confidence 77754
No 467
>PRK01889 GTPase RsgA; Reviewed
Probab=98.64 E-value=1.8e-08 Score=109.71 Aligned_cols=82 Identities=23% Similarity=0.360 Sum_probs=69.8
Q ss_pred cceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHH
Q 005205 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNI 553 (709)
Q Consensus 474 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI 553 (709)
-++.+.-.+++|++++|||+||+|||||++.|+|...|..|+|.+++..-+. ...++++.+++|+.+||+.+-..|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 3556666788999999999999999999999999999999999998754333 3446789999999999999888898
Q ss_pred HcCCC
Q 005205 554 RYGRL 558 (709)
Q Consensus 554 ~~g~~ 558 (709)
.+.++
T Consensus 261 ~l~~~ 265 (356)
T PRK01889 261 QLWDA 265 (356)
T ss_pred cccCc
Confidence 88754
No 468
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.63 E-value=3e-08 Score=109.22 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=65.3
Q ss_pred cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCC---EEEECCEeCCCCCHHHh------hcceEEEcCCC
Q 005205 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG---SIRIDGQDICEVTLESL------RKSIGVVPQDT 542 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G---~I~idG~di~~~~~~~l------R~~i~~V~Q~~ 542 (709)
..+++++ |+|.+||+++|+|+||+|||||+++|+|+++|+.+ .|-.+|.+++++..+.+ |..+++++||.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 3689999 99999999999999999999999999999999864 34445556665554444 55799999998
Q ss_pred CCCc-hhHHHHHH
Q 005205 543 VLFN-DTIFHNIR 554 (709)
Q Consensus 543 ~LF~-gTIreNI~ 554 (709)
..+. -++.+|..
T Consensus 222 s~~~rl~a~e~a~ 234 (434)
T PRK07196 222 SPLMRIKATELCH 234 (434)
T ss_pred ChhhhHHHHHHHH
Confidence 7764 36777764
No 469
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.56 E-value=1e-07 Score=106.51 Aligned_cols=140 Identities=13% Similarity=0.190 Sum_probs=85.3
Q ss_pred eeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCC
Q 005205 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR 557 (709)
Q Consensus 478 isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~ 557 (709)
.++.+++|+++++|||+|+||||++..|++.|.+..|. ++|++|++|+ |.-+..||+.++.
T Consensus 249 ~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQLr~~A 309 (484)
T PRK06995 249 EDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQLRIYG 309 (484)
T ss_pred ccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHHHHHH
Confidence 44456678999999999999999999999988777764 2689999998 6677899997531
Q ss_pred -----CC---CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC-----CEEEEeCCCC
Q 005205 558 -----LS---ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP-----PILLCDEATS 624 (709)
Q Consensus 558 -----~~---~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p-----~ILILDEaTS 624 (709)
|- .+..+. ...+..+.+.....|..-|.+-. ...+.-+.+++.++ .+|+||..|.
T Consensus 310 eilGVpv~~~~~~~Dl---------~~aL~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 310 KILGVPVHAVKDAADL---------RLALSELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHhCCCeeccCCchhH---------HHHHHhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 11 111121 11234555544455555443211 11223333444444 6899998877
Q ss_pred CCCHHHHHHHHHHHHHhc-CCCeEEEEecCc
Q 005205 625 ALDSTTEAEILNALKSLA-NNRTSIFIAHRL 654 (709)
Q Consensus 625 aLD~~tE~~I~~~L~~l~-~~~TvIvIaHRl 654 (709)
.- .+.+.++... .+.+-+++|+=-
T Consensus 378 ~~------~l~~i~~~f~~~~~~g~IlTKlD 402 (484)
T PRK06995 378 GD------TLNEVVQAYRGPGLAGCILTKLD 402 (484)
T ss_pred HH------HHHHHHHHhccCCCCEEEEeCCC
Confidence 62 2333333222 346777777643
No 470
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.56 E-value=1.1e-06 Score=95.48 Aligned_cols=172 Identities=25% Similarity=0.332 Sum_probs=119.0
Q ss_pred EEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHH-hcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCC
Q 005205 464 VHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLL-FRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (709)
Q Consensus 464 VsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL-~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~ 542 (709)
|+|..|+ ...+.+ +-||+| .+.|||.-=-|||||++.| .|-|+--.| ||. ..|--.+ +.
T Consensus 227 ve~~LP~-~g~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGR-----------E~VVT~~-~a 286 (448)
T PF09818_consen 227 VEIELPN-GGTVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGR-----------EFVVTDP-DA 286 (448)
T ss_pred EEEECCC-CCEEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCc-----------eEEEECC-Cc
Confidence 6777765 334555 579999 9999999999999999988 678876555 552 1221111 11
Q ss_pred CCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 005205 543 VLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEA 622 (709)
Q Consensus 543 ~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEa 622 (709)
. +-.+.|- +....+.+..||.+||.|.||.-- .-.+=||---|=-.|..||=..+++|++||=
T Consensus 287 v-------------kirAEDG---R~V~~vDISpFI~~LP~g~dT~~F-sT~~ASGSTSqAAnI~EAlE~Ga~~LLiDED 349 (448)
T PF09818_consen 287 V-------------KIRAEDG---RSVEGVDISPFINNLPGGKDTTCF-STENASGSTSQAANIMEALEAGARLLLIDED 349 (448)
T ss_pred e-------------EEEecCC---ceEeCccchHHHhhCCCCCCCCcc-cccCCCchHHHHHHHHHHHHcCCCEEEEcCc
Confidence 0 0011111 344556788999999999999832 2346699999999999999999999999999
Q ss_pred CCCC-----CHHHHHHH----------HHHHHHhc--CCCeEEEEec-CchHHhhcCeEEEEeCCEEE
Q 005205 623 TSAL-----DSTTEAEI----------LNALKSLA--NNRTSIFIAH-RLTTAMQCDEIIVLENGKVI 672 (709)
Q Consensus 623 TSaL-----D~~tE~~I----------~~~L~~l~--~~~TvIvIaH-Rlsti~~aD~Iivl~~G~Iv 672 (709)
|||- |...++.| .+.++.+. .|-++|+|+= -=..+.-||+|++||+=+-.
T Consensus 350 tsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~ 417 (448)
T PF09818_consen 350 TSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRPK 417 (448)
T ss_pred ccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccch
Confidence 9996 55556666 22233332 3555555554 44567889999999986543
No 471
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.53 E-value=1.2e-07 Score=102.98 Aligned_cols=87 Identities=26% Similarity=0.326 Sum_probs=65.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCC--CC-CEEEECCEeCCCCCHHHhhcceEEEcCCC-----CCCchhHHHHHH
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT--HS-GSIRIDGQDICEVTLESLRKSIGVVPQDT-----VLFNDTIFHNIR 554 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~p--~~-G~I~idG~di~~~~~~~lR~~i~~V~Q~~-----~LF~gTIreNI~ 554 (709)
++|..++|+||+||||||+++.|++++.+ .+ +.|.....|+ ++..+.++...++|+|.. .-|..+|+++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 58999999999999999999999999843 33 4666555555 588888877788888864 368999999998
Q ss_pred cCCCCC------CH-HHHHHHHHH
Q 005205 555 YGRLSA------TE-EEVYDAARR 571 (709)
Q Consensus 555 ~g~~~~------s~-~ei~~A~~~ 571 (709)
. +|+. -| |.+..|++.
T Consensus 211 ~-~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 211 R-KPHAILVGEARDAETISAALEA 233 (358)
T ss_pred c-CCCEEeeeeeCCHHHHHHHHHH
Confidence 6 4542 33 444556666
No 472
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.50 E-value=3.7e-07 Score=99.19 Aligned_cols=121 Identities=25% Similarity=0.250 Sum_probs=79.4
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCCCC-CCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCC
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSA 560 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~ 560 (709)
.+++..+.|.||+||||||+++.|++.+++ .+|.|..-+.++.-. .....+++.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~--------------------- 173 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLIN--------------------- 173 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEE---------------------
Confidence 467899999999999999999999997764 467766543221110 000000000
Q ss_pred CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005205 561 TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKS 640 (709)
Q Consensus 561 s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~ 640 (709)
+..+|..+.. --=++++||-.+|+++++||++ |+++-....++
T Consensus 174 -------------------------q~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a--- 216 (343)
T TIGR01420 174 -------------------------QREVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTA--- 216 (343)
T ss_pred -------------------------ccccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH---
Confidence 1112222111 1235778999999999999997 88887665554
Q ss_pred hcCCCeEEEEecCchHHhhcCeEE
Q 005205 641 LANNRTSIFIAHRLTTAMQCDEII 664 (709)
Q Consensus 641 l~~~~TvIvIaHRlsti~~aD~Ii 664 (709)
...|.+++...|..+.....||++
T Consensus 217 a~tGh~v~~T~Ha~~~~~~~~Rl~ 240 (343)
T TIGR01420 217 AETGHLVFGTLHTNSAAQTIERII 240 (343)
T ss_pred HHcCCcEEEEEcCCCHHHHHHHHH
Confidence 346889999999988776666654
No 473
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.46 E-value=3.5e-07 Score=94.32 Aligned_cols=45 Identities=13% Similarity=0.299 Sum_probs=36.1
Q ss_pred HhccCCCEEEEeCCCCC------CCHHHHHHHHHHHHHhc--CCCeEEEEecCc
Q 005205 609 AFLKAPPILLCDEATSA------LDSTTEAEILNALKSLA--NNRTSIFIAHRL 654 (709)
Q Consensus 609 All~~p~ILILDEaTSa------LD~~tE~~I~~~L~~l~--~~~TvIvIaHRl 654 (709)
+..++|+++|+| |+++ +|+..-..+.+.|+++. .++|+|+++|..
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 335799999999 6654 68888888888887764 479999999976
No 474
>PRK08149 ATP synthase SpaL; Validated
Probab=98.45 E-value=1.8e-07 Score=102.94 Aligned_cols=69 Identities=19% Similarity=0.386 Sum_probs=61.1
Q ss_pred cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCC---CEEEECCEeCCCCCHHHhh----cceEEEcCC
Q 005205 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS---GSIRIDGQDICEVTLESLR----KSIGVVPQD 541 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~---G~I~idG~di~~~~~~~lR----~~i~~V~Q~ 541 (709)
.++++++ +++.+||+++|+|+||+|||||++.|+++++++. |.|-.+|.+++++..+.++ +++++|...
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 4689999 9999999999999999999999999999999988 9999999999988776665 567777543
No 475
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.41 E-value=5.6e-08 Score=110.36 Aligned_cols=156 Identities=18% Similarity=0.205 Sum_probs=94.3
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHH--hcCCCCCCCEEEECCEeCCCCCHHHhhcc---eEEEcCCCCCCchhHHHHHHc
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLL--FRSFDTHSGSIRIDGQDICEVTLESLRKS---IGVVPQDTVLFNDTIFHNIRY 555 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL--~rly~p~~G~I~idG~di~~~~~~~lR~~---i~~V~Q~~~LF~gTIreNI~~ 555 (709)
=+++|..+.|.|++|||||||+.-. .|.-++.+..+++... -++++++++ +|+..|+..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 4899999999999999999999765 3454556677777652 344454443 4544443210 011211
Q ss_pred CCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHH--HHhccCCCEEEEeCCCCCCCHHHHHH
Q 005205 556 GRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA--RAFLKAPPILLCDEATSALDSTTEAE 633 (709)
Q Consensus 556 g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIA--RAll~~p~ILILDEaTSaLD~~tE~~ 633 (709)
-++. ........++..++++++..+ ...+|+||+||+.|+ .++..+|+.. ....+.
T Consensus 88 ~~~~-~~~~~~~~~~~~~l~~~l~~i-----------~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~ 145 (484)
T TIGR02655 88 LDAS-PDPEGQDVVGGFDLSALIERI-----------NYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRRE 145 (484)
T ss_pred EecC-chhccccccccCCHHHHHHHH-----------HHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHH
Confidence 1110 111111122333444444333 346799999999999 6776665533 345556
Q ss_pred HHHHHHHhc-CCCeEEEEecCchH--------H-h-hcCeEEEEe
Q 005205 634 ILNALKSLA-NNRTSIFIAHRLTT--------A-M-QCDEIIVLE 667 (709)
Q Consensus 634 I~~~L~~l~-~~~TvIvIaHRlst--------i-~-~aD~Iivl~ 667 (709)
+.+.++.+. .++|+|+++|..+. + . -||.|+.|+
T Consensus 146 l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 146 IFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 666665543 58999999998753 1 2 379999887
No 476
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.41 E-value=1.9e-06 Score=95.81 Aligned_cols=183 Identities=17% Similarity=0.219 Sum_probs=114.8
Q ss_pred CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHH
Q 005205 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (709)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIr 550 (709)
+..+++++ ++|.+||+++|+|+||+|||||++.|+++.+|+.|.+...|..-+++. .+.+. ++.+.-.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~--~~~~~---------~~~~~~l 217 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVR--EFIEH---------DLGEEGL 217 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHH--HHHHH---------Hhccccc
Confidence 45789999 999999999999999999999999999999999988777665544433 11100 0110001
Q ss_pred HHH--HcCCCCCCHHHHHHHHHHH-chHHHHHhCCCCcccccc-CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 005205 551 HNI--RYGRLSATEEEVYDAARRA-AIHDTIMNFPAKYSTVVG-ERGLKLSGGEKQRVALARAFLKAPPILLCDEATSAL 626 (709)
Q Consensus 551 eNI--~~g~~~~s~~ei~~A~~~a-~l~~~I~~Lp~G~dT~vG-e~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaL 626 (709)
++- .....+-+.-+-..++..| .+.|+... +|+|-.+= +.=.++ -|-|| .|+= .+..|| .+.+.
T Consensus 218 ~~tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr~--A~A~R-Eisl-~~ge~P------~~~Gy 285 (440)
T TIGR01026 218 KRSVVVVATSDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTRF--AMAQR-EIGL-AAGEPP------ATKGY 285 (440)
T ss_pred ceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHHH--HHHHH-HHHH-hcCCCC------ccccc
Confidence 111 1111111222333444444 45566664 58876553 222222 22233 2221 123444 46789
Q ss_pred CHHHHHHHHHHHHHhcC-CC-------eEEEEecCchHHhhcCeEEEEeCCEEEEecChH
Q 005205 627 DSTTEAEILNALKSLAN-NR-------TSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHD 678 (709)
Q Consensus 627 D~~tE~~I~~~L~~l~~-~~-------TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~ 678 (709)
|+..-..+-+-+++... ++ |+++-+|++ +=.-||.+.-+.+|+||-.++-.
T Consensus 286 pp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~-~dpi~d~~~~i~dG~ivLsr~la 344 (440)
T TIGR01026 286 TPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM-NEPIADSVRGILDGHIVLSRALA 344 (440)
T ss_pred ChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC-CcchhhhhccccceEEEEecchh
Confidence 99999888888877653 46 888889998 34568999999999999776543
No 477
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.38 E-value=3.2e-06 Score=81.37 Aligned_cols=84 Identities=23% Similarity=0.329 Sum_probs=64.4
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEE
Q 005205 595 KLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI 672 (709)
Q Consensus 595 ~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Iv 672 (709)
.-|-|+-=-=-+.|.+ .+.-|.|||||-|+|-+.-.-.+...|+++. .|.-+|+.||.+=.+.. --+|+-++.+-|
T Consensus 129 ~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~- 206 (233)
T COG3910 129 HMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI- 206 (233)
T ss_pred hhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc-
Confidence 4588987766677776 4678999999999999999999999998875 46788888998755443 357888887764
Q ss_pred EecChHHH
Q 005205 673 EQGSHDDL 680 (709)
Q Consensus 673 e~Gth~eL 680 (709)
|.-+++|.
T Consensus 207 ~~~~fe~t 214 (233)
T COG3910 207 EERDFEET 214 (233)
T ss_pred cccchHHH
Confidence 44455554
No 478
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.36 E-value=3.7e-07 Score=89.51 Aligned_cols=66 Identities=32% Similarity=0.371 Sum_probs=47.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhc-ceEEEcCCCCC-CchhHHHHHHc
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK-SIGVVPQDTVL-FNDTIFHNIRY 555 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~-~i~~V~Q~~~L-F~gTIreNI~~ 555 (709)
+|+.++|+|+||||||||++.|++++.| +.+||.++.. ...+|+ ..++.+|+... ..-++.+|+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999999887 6899988743 233443 35666666432 33445555544
No 479
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.36 E-value=4.5e-07 Score=89.79 Aligned_cols=55 Identities=25% Similarity=0.344 Sum_probs=48.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCC
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~ 542 (709)
|+.++|+||||||||||+++|++.+.| .+.+++..+........++.+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999998876 5888888888777777888999999984
No 480
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.36 E-value=2.7e-07 Score=94.43 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=32.1
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHh-cCCCCCCCEEEECC
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLF-RSFDTHSGSIRIDG 520 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~-rly~p~~G~I~idG 520 (709)
-+++|+.+.|.|++|||||||+..++ ....+.++.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 58999999999999999999987543 33455666777765
No 481
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.31 E-value=1.8e-06 Score=108.26 Aligned_cols=143 Identities=20% Similarity=0.199 Sum_probs=81.2
Q ss_pred eeeEeeCCcEEEEEcCCCccHHHHHHHH-hcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcC
Q 005205 478 VSFVVPAGKSVAIVGTSGSGKSTILRLL-FRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG 556 (709)
Q Consensus 478 isl~I~~Ge~vaIVG~SGsGKSTL~~LL-~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g 556 (709)
+++..+.+++++|+|++|+|||||++.+ .++-+..+|.+++++..++... +. +-.+++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~-~~------~~~~~~~------------- 259 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM-EI------YSSANPD------------- 259 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch-hh------ccccccc-------------
Confidence 5677889999999999999999999999 4444556899999863222110 00 0001110
Q ss_pred CCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 005205 557 RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILN 636 (709)
Q Consensus 557 ~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~ 636 (709)
+......+. .+++.++.+..+..+. . .++.|+|+ -.++-+|||||... ..+.+
T Consensus 260 -----~~~~~~~l~----~~~l~~il~~~~~~~~----~-~~~~~~~L------~~krvLLVLDdv~~-------~~~l~ 312 (1153)
T PLN03210 260 -----DYNMKLHLQ----RAFLSEILDKKDIKIY----H-LGAMEERL------KHRKVLIFIDDLDD-------QDVLD 312 (1153)
T ss_pred -----ccchhHHHH----HHHHHHHhCCCCcccC----C-HHHHHHHH------hCCeEEEEEeCCCC-------HHHHH
Confidence 000000111 1222222222222221 1 25566653 24455677898532 23455
Q ss_pred HHHHh----cCCCeEEEEecCchHHhh--cCeEEEEe
Q 005205 637 ALKSL----ANNRTSIFIAHRLTTAMQ--CDEIIVLE 667 (709)
Q Consensus 637 ~L~~l----~~~~TvIvIaHRlsti~~--aD~Iivl~ 667 (709)
.|... ..|.++|++||+.+.++. +|+++.++
T Consensus 313 ~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 313 ALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred HHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEec
Confidence 55443 247899999999998865 68887764
No 482
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.31 E-value=3.2e-07 Score=90.09 Aligned_cols=77 Identities=30% Similarity=0.426 Sum_probs=55.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCC------------CCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHH
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSFD------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHN 552 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly~------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreN 552 (709)
|++++|+||||||||||++.|++.++ |..|+ ++|++..-++.+.+.+.+ .++.++...++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999874 34444 466666666666666654 57778888888877
Q ss_pred HHcCCCCCCHHHHHHHHH
Q 005205 553 IRYGRLSATEEEVYDAAR 570 (709)
Q Consensus 553 I~~g~~~~s~~ei~~A~~ 570 (709)
. ||. +.+.+.++++
T Consensus 76 ~-y~~---~~~~i~~~~~ 89 (180)
T TIGR03263 76 Y-YGT---PKSPVEEALA 89 (180)
T ss_pred e-eCC---cHHHHHHHHH
Confidence 4 663 3555655543
No 483
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.30 E-value=1.4e-06 Score=87.31 Aligned_cols=104 Identities=18% Similarity=0.264 Sum_probs=68.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCC--CHHH
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSA--TEEE 564 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~--s~~e 564 (709)
+++|+|++|||||||++.+.+.+.+..| +.+-..|........+....++++|+..+. +..| |.+.- -.+-
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~---g~~~~~~~~~~ 75 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILG---VETG---GCPHTAIREDA 75 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceeh---hhcC---CCccceeccCH
Confidence 6899999999999999999999887755 545556666666677777789999988652 1111 12211 1111
Q ss_pred HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHH
Q 005205 565 VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (709)
Q Consensus 565 i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 600 (709)
. .....+.+.+.++|++-.+.|+-.|..+|.-.
T Consensus 76 ~---~~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 76 S---MNLEAVAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred H---HHHHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence 1 12234456666777666677777787666555
No 484
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.30 E-value=1.7e-07 Score=88.06 Aligned_cols=72 Identities=32% Similarity=0.505 Sum_probs=57.1
Q ss_pred EEEEcCCCccHHHHHHHHhcCCCC-------------CCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHH
Q 005205 488 VAIVGTSGSGKSTILRLLFRSFDT-------------HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIR 554 (709)
Q Consensus 488 vaIVG~SGsGKSTL~~LL~rly~p-------------~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~ 554 (709)
++|+||||||||||+++|++.+++ ..|+ ++|++..-++.+++++. +.|+.++..++...| .
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~-~ 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN-Y 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-E
Confidence 789999999999999999999764 4455 58888888888888874 568889999999988 5
Q ss_pred cCCCCCCHHHHHHH
Q 005205 555 YGRLSATEEEVYDA 568 (709)
Q Consensus 555 ~g~~~~s~~ei~~A 568 (709)
||.+ .+++.++
T Consensus 76 yg~~---~~~i~~~ 86 (137)
T cd00071 76 YGTS---KAAVEEA 86 (137)
T ss_pred ecCc---HHHHHHH
Confidence 7754 4445443
No 485
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.28 E-value=6.4e-07 Score=89.53 Aligned_cols=107 Identities=14% Similarity=0.214 Sum_probs=61.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHH-----HHHcCCCCCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH-----NIRYGRLSAT 561 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIre-----NI~~g~~~~s 561 (709)
.++|+|+||||||||++.|.+++ ..|.+. ++++|.+...-+.++ +..++.|..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~-------------------v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVV-------------------IISQDSYYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeE-------------------EEEecccccccccccHHHhccCCCCCCCcc
Confidence 48999999999999999999988 333333 333343332222211 1223333322
Q ss_pred H-HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 005205 562 E-EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDS 628 (709)
Q Consensus 562 ~-~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~ 628 (709)
+ +.+.+. +..+-.|- .+--..-+.|.|++++-.+ .+.+|+++|+|++.+..++
T Consensus 60 ~~~~~~~~---------l~~l~~~~--~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 DFDLLISH---------LQDLKNGK--SVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cHHHHHHH---------HHHHHCCC--CEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 2 222222 22221221 1222334677777776554 5788999999999998876
No 486
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.28 E-value=2.2e-05 Score=94.77 Aligned_cols=61 Identities=26% Similarity=0.305 Sum_probs=48.4
Q ss_pred HHhccCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhc-CCCeEEEEecCchH----------HhhcCeEEEEeC
Q 005205 608 RAFLKAPPILLCDEATSALD-STTEAEILNALKSLA-NNRTSIFIAHRLTT----------AMQCDEIIVLEN 668 (709)
Q Consensus 608 RAll~~p~ILILDEaTSaLD-~~tE~~I~~~L~~l~-~~~TvIvIaHRlst----------i~~aD~Iivl~~ 668 (709)
+.+-.+|.++++|||...|| +...+.+.+.+++.. .+..++++||.++. +++|+.-+.|-|
T Consensus 637 ~~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 637 ISLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPN 709 (800)
T ss_pred HHhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHhChhHHHHHHhCCeEEEcCC
Confidence 34567899999999999999 888888888887764 57899999999866 456666556644
No 487
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.28 E-value=8.3e-07 Score=98.17 Aligned_cols=101 Identities=21% Similarity=0.355 Sum_probs=71.5
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-CCCEEEE---CCEeCCCCCHHHhh---cceEEE-----cC
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRI---DGQDICEVTLESLR---KSIGVV-----PQ 540 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-~~G~I~i---dG~di~~~~~~~lR---~~i~~V-----~Q 540 (709)
.+++++ |+|.+||+++|+|+||+|||||++.|+|+.++ +.|.|.+ +|.++.++..+.++ ...++| +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 478887 99999999999999999999999999998844 4466766 55777777666665 235556 99
Q ss_pred CCC------CCchhHHHHHHcCCCCC-----CHHHHHHHHHHHch
Q 005205 541 DTV------LFNDTIFHNIRYGRLSA-----TEEEVYDAARRAAI 574 (709)
Q Consensus 541 ~~~------LF~gTIreNI~~g~~~~-----s~~ei~~A~~~a~l 574 (709)
+|. ....+|.|.++....+. +..+..+|++..++
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 774 34557888886532221 23444455555544
No 488
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.25 E-value=5.7e-06 Score=76.83 Aligned_cols=54 Identities=24% Similarity=0.254 Sum_probs=40.8
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc------CCCeEEEEecCch
Q 005205 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA------NNRTSIFIAHRLT 655 (709)
Q Consensus 601 rQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~------~~~TvIvIaHRls 655 (709)
++.....++...++.++++||+-.. +.+....+.+.+.... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 6667777788889999999998765 5666677777777763 4677888887544
No 489
>PLN02796 D-glycerate 3-kinase
Probab=98.25 E-value=4e-07 Score=97.13 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=54.3
Q ss_pred cccceeeeeEe---eCCcE-----EEEEcCCCccHHHHHHHHhcCCCCC---CCEEEECCEeCCCCCHHHhhc
Q 005205 472 RKILDGVSFVV---PAGKS-----VAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVTLESLRK 533 (709)
Q Consensus 472 ~~vL~~isl~I---~~Ge~-----vaIVG~SGsGKSTL~~LL~rly~p~---~G~I~idG~di~~~~~~~lR~ 533 (709)
..+++++++.+ ++|+. +||+|+||||||||++.|.+++.+. .|.|.+||..+.......+++
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 46889999988 67887 9999999999999999999999875 688999999988777777776
No 490
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.23 E-value=1.9e-06 Score=84.51 Aligned_cols=62 Identities=21% Similarity=0.324 Sum_probs=47.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEE-----------CCEeCCCCCHHHhh-----cceEEEcCCCCCCch
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI-----------DGQDICEVTLESLR-----KSIGVVPQDTVLFND 547 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~i-----------dG~di~~~~~~~lR-----~~i~~V~Q~~~LF~g 547 (709)
|+.++|+||||||||||++.|++.+.+. |.+.+ +|.+....+.+.+. +.++.+.|...++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 65544 77777777766653 358888888755544
No 491
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.23 E-value=0.0051 Score=61.99 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005205 122 EFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTT 157 (709)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~ 157 (709)
.+++++.+...+.++..++.+..|++++..||.+..
T Consensus 7 ~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~ 42 (237)
T PF13748_consen 7 RHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLN 42 (237)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 457788888888889999999999999999999874
No 492
>PRK15494 era GTPase Era; Provisional
Probab=98.22 E-value=7.7e-07 Score=96.49 Aligned_cols=54 Identities=26% Similarity=0.268 Sum_probs=50.1
Q ss_pred CceEEEEeEEEEecCCcccceeeeeEeeCCc-------EEEEEcCCCccHHHHHHHHhcCC
Q 005205 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGK-------SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 456 ~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge-------~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.|.+++++|+|+||..+++++++++++++|+ +++|||.+|+|||||++-|.+-.
T Consensus 16 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 16 KGDTEALAAAVREDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred CCccccccccccCCCCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 5789999999999977889999999999999 99999999999999999988753
No 493
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.19 E-value=2.3e-06 Score=107.94 Aligned_cols=61 Identities=30% Similarity=0.439 Sum_probs=55.0
Q ss_pred CCCCCChHHHHHHH----HHHH--------hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCc
Q 005205 592 RGLKLSGGEKQRVA----LARA--------FLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRL 654 (709)
Q Consensus 592 ~G~~LSGGQrQRia----IARA--------ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRl 654 (709)
+...||||||||++ +|+| +..+|++++|||||++||+.+...+++.+.++ +.++|+++|++
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence 35789999999996 6766 55899999999999999999999999999887 78999999997
No 494
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.19 E-value=5e-06 Score=85.24 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=50.7
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHh-cCCCC------CCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHH
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLF-RSFDT------HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNI 553 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~-rly~p------~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI 553 (709)
=|++|+.+.|+|++|||||||+.-++ ....| .++.|+||+.+ ..+.+.+++.. |..-....++.+||
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~----~~~~~~~~~~~~~i 88 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIA----ERFGLDPEEVLDNI 88 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHH----HHhccChHhHhcCE
Confidence 38999999999999999999998775 32334 37889998865 23444433321 11111234677888
Q ss_pred HcCCCCCCHHHHH
Q 005205 554 RYGRLSATEEEVY 566 (709)
Q Consensus 554 ~~g~~~~s~~ei~ 566 (709)
.+.++ .+.+++.
T Consensus 89 ~~~~~-~~~~~l~ 100 (235)
T cd01123 89 YVARA-YNSDHQL 100 (235)
T ss_pred EEEec-CCHHHHH
Confidence 77654 3344443
No 495
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.17 E-value=1.2e-06 Score=88.20 Aligned_cols=44 Identities=32% Similarity=0.544 Sum_probs=36.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCch
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND 547 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~g 547 (709)
|+|+.+||+|+||||||||++.|.+++++ ..+++++||.++++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~---------------------~~~~~i~~D~~~~~~ 47 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK---------------------LEIVIISQDNYYKDQ 47 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc---------------------cCCeEecccccccCh
Confidence 68999999999999999999999998764 246677777776643
No 496
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.13 E-value=1.8e-06 Score=86.46 Aligned_cols=56 Identities=27% Similarity=0.394 Sum_probs=43.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCC-CCCEEEECCEeCCCCCHHHhhcceEEEcCCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~ 542 (709)
++|+.++|+|+||||||||+++|.+.+.+ ..|.+.+||.+++. .+...++|++|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCcccH
Confidence 67899999999999999999999986644 45789999977762 2333466666665
No 497
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.12 E-value=2.9e-06 Score=93.59 Aligned_cols=58 Identities=33% Similarity=0.448 Sum_probs=51.5
Q ss_pred ecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC
Q 005205 468 YLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (709)
Q Consensus 468 Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~ 526 (709)
|+.+..+++++ +++.+|++++|+|++|+|||||+++|+++.+|+.|.|...|..-++.
T Consensus 121 ~~tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev 178 (413)
T TIGR03497 121 LETGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREV 178 (413)
T ss_pred ccccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHH
Confidence 43445789999 99999999999999999999999999999999999999888766553
No 498
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.10 E-value=4.7e-06 Score=84.02 Aligned_cols=66 Identities=24% Similarity=0.409 Sum_probs=46.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCch---hH--HHHHHcCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND---TI--FHNIRYGR 557 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~g---TI--reNI~~g~ 557 (709)
+++.+|+|+|+||||||||++.|.+.++ ...+++++||.+.++. +. +.++.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------------~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~ 62 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------------DESIAVIPQDSYYKDQSHLSFEERVKTNYDH 62 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------------CCceEEEeCCccccCcccCCHHHhcccCccC
Confidence 4688999999999999999999999872 1368889999987754 23 33445555
Q ss_pred CCC-CHHHHHHHH
Q 005205 558 LSA-TEEEVYDAA 569 (709)
Q Consensus 558 ~~~-s~~ei~~A~ 569 (709)
|++ +.+.+.+.+
T Consensus 63 ~~~~~~~~l~~~l 75 (209)
T PRK05480 63 PDAFDHDLLIEHL 75 (209)
T ss_pred cccccHHHHHHHH
Confidence 543 333444333
No 499
>PRK09183 transposase/IS protein; Provisional
Probab=98.10 E-value=1e-05 Score=84.37 Aligned_cols=50 Identities=24% Similarity=0.441 Sum_probs=39.0
Q ss_pred EEEeEEEEecCCc-----ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 460 QFDNVHFSYLTER-----KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 460 ~f~nVsF~Y~~~~-----~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
.+++..|++.+.. ..|.+++| +++|+.+.|+||+|+|||+|+..|.....
T Consensus 73 ~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 73 TFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred cHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4556666665321 35778888 99999999999999999999999976544
No 500
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.09 E-value=7.6e-06 Score=100.14 Aligned_cols=76 Identities=26% Similarity=0.319 Sum_probs=66.3
Q ss_pred CCCChHHHHHH------HHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchHHhhcCeEE
Q 005205 594 LKLSGGEKQRV------ALARAFLKA--PPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQCDEII 664 (709)
Q Consensus 594 ~~LSGGQrQRi------aIARAll~~--p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRlsti~~aD~Ii 664 (709)
.+|||||+=.+ |||..+-.+ -+.|+|||||..||+++-..+.+.|.++.. ++++|||||.-.....+|.++
T Consensus 814 ~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~i 893 (908)
T COG0419 814 KTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVRI 893 (908)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeEE
Confidence 58999998754 555666677 699999999999999999999999988875 599999999999999999999
Q ss_pred EEeCC
Q 005205 665 VLENG 669 (709)
Q Consensus 665 vl~~G 669 (709)
.+++.
T Consensus 894 ~V~k~ 898 (908)
T COG0419 894 RVKKD 898 (908)
T ss_pred EEEec
Confidence 98754
Done!