Query 005205
Match_columns 709
No_of_seqs 384 out of 2827
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 18:35:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 3E-103 1E-107 976.2 72.3 504 192-696 149-655 (1321)
2 4f4c_A Multidrug resistance pr 100.0 5E-101 2E-105 956.1 53.4 505 193-698 808-1320(1321)
3 3qf4_A ABC transporter, ATP-bi 100.0 1.4E-97 5E-102 858.0 68.7 569 109-697 12-581 (587)
4 4a82_A Cystic fibrosis transme 100.0 3E-97 1E-101 854.9 68.3 575 108-695 2-577 (578)
5 3qf4_B Uncharacterized ABC tra 100.0 3E-97 1E-101 857.7 64.4 572 105-697 22-593 (598)
6 3b5x_A Lipid A export ATP-bind 100.0 2E-94 6.8E-99 832.5 78.9 569 105-695 10-580 (582)
7 3b60_A Lipid A export ATP-bind 100.0 1.8E-94 6.2E-99 832.8 73.0 569 105-695 10-580 (582)
8 2yl4_A ATP-binding cassette SU 100.0 8.1E-94 2.8E-98 829.4 74.9 575 106-697 5-586 (595)
9 3g5u_A MCG1178, multidrug resi 100.0 1.4E-92 4.9E-97 878.4 62.0 581 108-696 35-627 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 2.8E-86 9.7E-91 822.0 58.5 561 126-697 706-1273(1284)
11 3nh6_A ATP-binding cassette SU 100.0 7.8E-75 2.7E-79 613.1 28.9 281 419-699 14-294 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 9.3E-61 3.2E-65 492.8 31.2 238 457-694 6-245 (247)
13 2ghi_A Transport protein; mult 100.0 1.5E-59 5E-64 487.6 29.2 239 457-696 16-256 (260)
14 1mv5_A LMRA, multidrug resista 100.0 2.9E-60 9.9E-65 488.4 19.9 237 459-695 2-239 (243)
15 2ixe_A Antigen peptide transpo 100.0 8.6E-59 3E-63 484.4 29.4 240 457-696 15-259 (271)
16 3gd7_A Fusion complex of cysti 100.0 6E-56 2E-60 483.0 24.7 227 455-683 16-243 (390)
17 2cbz_A Multidrug resistance-as 100.0 1.1E-55 3.7E-60 452.4 24.7 226 458-697 3-232 (237)
18 2pze_A Cystic fibrosis transme 100.0 7.1E-55 2.4E-59 444.2 26.4 221 457-691 5-227 (229)
19 3gfo_A Cobalt import ATP-bindi 100.0 3.8E-52 1.3E-56 434.2 25.5 221 458-689 7-240 (275)
20 3tui_C Methionine import ATP-b 100.0 2.6E-52 8.9E-57 448.3 23.2 225 457-692 23-265 (366)
21 1ji0_A ABC transporter; ATP bi 100.0 1.2E-51 4.2E-56 423.3 26.6 219 458-683 6-229 (240)
22 2bbs_A Cystic fibrosis transme 100.0 1.9E-51 6.6E-56 432.1 23.3 217 457-691 39-256 (290)
23 3tif_A Uncharacterized ABC tra 100.0 5.2E-51 1.8E-55 417.2 25.8 212 459-681 2-233 (235)
24 4g1u_C Hemin import ATP-bindin 100.0 6.5E-51 2.2E-55 423.6 22.8 221 458-691 11-245 (266)
25 2olj_A Amino acid ABC transpor 100.0 5.5E-50 1.9E-54 415.5 26.8 214 458-683 24-249 (263)
26 2yz2_A Putative ABC transporte 100.0 2.3E-50 7.9E-55 420.0 23.7 212 459-684 3-229 (266)
27 1vpl_A ABC transporter, ATP-bi 100.0 2.5E-50 8.7E-55 416.6 22.7 213 457-682 14-235 (256)
28 2pcj_A ABC transporter, lipopr 100.0 1.7E-50 5.7E-55 410.6 19.8 208 458-677 4-223 (224)
29 1g6h_A High-affinity branched- 100.0 9E-50 3.1E-54 413.6 25.1 215 458-680 7-240 (257)
30 1b0u_A Histidine permease; ABC 100.0 3.6E-50 1.2E-54 417.4 22.0 215 458-683 6-243 (262)
31 3fvq_A Fe(3+) IONS import ATP- 100.0 7.6E-50 2.6E-54 429.1 24.3 215 458-684 4-230 (359)
32 3rlf_A Maltose/maltodextrin im 100.0 4.9E-50 1.7E-54 433.3 21.5 217 458-688 3-230 (381)
33 2qi9_C Vitamin B12 import ATP- 100.0 1.5E-49 5.2E-54 409.1 22.4 217 458-692 4-231 (249)
34 1z47_A CYSA, putative ABC-tran 100.0 1.3E-49 4.3E-54 427.7 21.7 214 457-683 13-236 (355)
35 2ihy_A ABC transporter, ATP-bi 100.0 6.3E-50 2.2E-54 418.8 18.9 214 458-683 21-253 (279)
36 2onk_A Molybdate/tungstate ABC 100.0 1.4E-49 4.8E-54 407.3 20.7 209 459-684 2-218 (240)
37 2yyz_A Sugar ABC transporter, 100.0 4.3E-49 1.5E-53 424.5 25.0 213 458-684 3-225 (359)
38 2it1_A 362AA long hypothetical 100.0 1.8E-49 6.2E-54 427.9 20.7 213 458-684 3-225 (362)
39 2d2e_A SUFC protein; ABC-ATPas 100.0 2.2E-49 7.5E-54 409.0 19.7 211 458-679 3-230 (250)
40 3d31_A Sulfate/molybdate ABC t 100.0 5.5E-49 1.9E-53 422.4 22.2 211 459-684 2-219 (348)
41 1v43_A Sugar-binding transport 100.0 9.5E-49 3.2E-53 423.8 24.2 213 458-684 11-233 (372)
42 1oxx_K GLCV, glucose, ABC tran 100.0 4.1E-49 1.4E-53 424.9 21.0 215 458-684 3-232 (353)
43 2zu0_C Probable ATP-dependent 100.0 1.3E-48 4.6E-53 406.7 23.0 217 458-682 20-254 (267)
44 1g29_1 MALK, maltose transport 100.0 1.3E-48 4.5E-53 423.5 21.2 212 458-683 3-230 (372)
45 2pjz_A Hypothetical protein ST 100.0 3.3E-48 1.1E-52 402.1 20.8 206 459-683 2-216 (263)
46 2nq2_C Hypothetical ABC transp 100.0 3.6E-48 1.2E-52 400.2 20.6 208 458-691 4-225 (253)
47 1sgw_A Putative ABC transporte 100.0 5.9E-47 2E-51 380.8 15.4 197 457-672 9-211 (214)
48 2v9p_A Replication protein E1; 100.0 4.7E-47 1.6E-51 399.6 -15.2 241 389-696 35-277 (305)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 1.5E-37 5.1E-42 353.6 14.3 200 458-683 287-494 (538)
50 3bk7_A ABC transporter ATP-bin 100.0 2E-37 7E-42 356.1 15.0 200 458-683 357-564 (607)
51 3ozx_A RNAse L inhibitor; ATP 100.0 4.5E-37 1.5E-41 348.9 17.0 200 458-682 269-477 (538)
52 2iw3_A Elongation factor 3A; a 100.0 3.4E-37 1.2E-41 365.5 12.4 204 458-676 671-981 (986)
53 3j16_B RLI1P; ribosome recycli 100.0 6.8E-36 2.3E-40 342.8 16.2 200 461-684 349-561 (608)
54 3ux8_A Excinuclease ABC, A sub 100.0 3.8E-36 1.3E-40 352.1 13.6 208 471-689 334-647 (670)
55 3bk7_A ABC transporter ATP-bin 100.0 2.6E-36 8.9E-41 346.9 10.9 197 458-669 83-304 (607)
56 3pih_A Uvrabc system protein A 100.0 6.6E-35 2.2E-39 345.9 20.7 219 457-691 588-911 (916)
57 1yqt_A RNAse L inhibitor; ATP- 100.0 3.9E-36 1.3E-40 342.0 9.6 196 459-669 21-234 (538)
58 2iw3_A Elongation factor 3A; a 100.0 4.7E-34 1.6E-38 338.7 27.5 198 457-683 434-636 (986)
59 3ux8_A Excinuclease ABC, A sub 100.0 6.6E-35 2.3E-39 341.6 16.6 206 471-685 30-301 (670)
60 3j16_B RLI1P; ribosome recycli 100.0 1.2E-33 4.1E-38 324.2 13.5 196 463-671 82-299 (608)
61 4aby_A DNA repair protein RECN 100.0 2.6E-32 8.8E-37 302.0 19.4 209 458-675 42-381 (415)
62 3ozx_A RNAse L inhibitor; ATP 100.0 2.5E-33 8.6E-38 318.1 10.7 193 463-670 4-214 (538)
63 2vf7_A UVRA2, excinuclease ABC 100.0 7.2E-33 2.5E-37 326.0 13.7 217 457-687 501-832 (842)
64 2r6f_A Excinuclease ABC subuni 100.0 3.6E-32 1.2E-36 320.0 18.5 217 458-691 629-951 (972)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 5.2E-36 1.8E-40 333.7 -15.6 200 458-691 118-348 (460)
66 2ygr_A Uvrabc system protein A 100.0 5.3E-31 1.8E-35 311.2 19.8 219 457-692 646-970 (993)
67 1e69_A Chromosome segregation 100.0 5.3E-30 1.8E-34 274.1 14.8 213 458-679 5-310 (322)
68 2pt7_A CAG-ALFA; ATPase, prote 100.0 6.6E-33 2.3E-37 297.0 -16.1 206 393-671 75-292 (330)
69 3b85_A Phosphate starvation-in 99.9 1.2E-30 4E-35 261.3 -5.6 160 471-671 12-172 (208)
70 1z6g_A Guanylate kinase; struc 99.9 1.6E-31 5.5E-36 269.9 -12.2 166 473-668 11-193 (218)
71 4gp7_A Metallophosphoesterase; 99.9 6.1E-28 2.1E-32 234.3 3.2 149 477-663 1-168 (171)
72 2dpy_A FLII, flagellum-specifi 99.9 4E-29 1.4E-33 276.8 -8.8 194 457-682 130-344 (438)
73 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.1E-25 3.8E-30 244.4 16.9 82 592-673 276-364 (365)
74 1ye8_A Protein THEP1, hypothet 99.9 4.6E-28 1.6E-32 236.7 -2.8 147 487-673 2-159 (178)
75 2eyu_A Twitching motility prot 99.9 8.4E-29 2.9E-33 256.5 -16.0 184 459-656 6-242 (261)
76 1tq4_A IIGP1, interferon-induc 99.9 3.6E-27 1.2E-31 258.1 -8.2 168 472-664 36-248 (413)
77 3aez_A Pantothenate kinase; tr 99.9 6.4E-27 2.2E-31 248.4 -9.4 178 456-669 41-245 (312)
78 2ewv_A Twitching motility prot 99.9 2.6E-27 8.7E-32 257.7 -13.3 175 473-656 126-353 (372)
79 2f1r_A Molybdopterin-guanine d 99.9 1.4E-26 4.8E-31 224.3 -7.7 111 486-617 3-125 (171)
80 2vf7_A UVRA2, excinuclease ABC 99.9 6.2E-24 2.1E-28 250.2 12.4 95 589-683 373-476 (842)
81 3sop_A Neuronal-specific septi 99.9 4.5E-25 1.5E-29 229.7 -4.4 150 487-658 4-154 (270)
82 1lvg_A Guanylate kinase, GMP k 99.9 9.6E-27 3.3E-31 231.4 -16.5 169 482-682 1-183 (198)
83 2o5v_A DNA replication and rep 99.9 1.4E-22 4.7E-27 218.5 14.2 82 595-681 265-355 (359)
84 2gza_A Type IV secretion syste 99.9 1.1E-26 3.7E-31 252.0 -18.5 220 384-609 54-301 (361)
85 3b9q_A Chloroplast SRP recepto 99.9 3.6E-24 1.2E-28 226.2 0.5 175 476-672 91-285 (302)
86 2obl_A ESCN; ATPase, hydrolase 99.9 1.6E-23 5.4E-28 225.3 1.2 193 458-680 45-253 (347)
87 2i3b_A HCR-ntpase, human cance 99.9 2.8E-24 9.5E-29 211.7 -5.5 172 485-692 1-182 (189)
88 1znw_A Guanylate kinase, GMP k 99.9 2.4E-24 8.2E-29 215.4 -6.5 168 472-667 9-202 (207)
89 2og2_A Putative signal recogni 99.9 2.5E-23 8.4E-28 224.0 -0.7 174 477-672 149-342 (359)
90 1lw7_A Transcriptional regulat 99.8 2.2E-23 7.5E-28 226.6 -8.0 148 474-623 157-329 (365)
91 3pih_A Uvrabc system protein A 99.8 4.8E-21 1.6E-25 227.5 10.0 164 505-684 388-562 (916)
92 3asz_A Uridine kinase; cytidin 99.8 1.6E-23 5.5E-28 209.5 -10.9 155 482-665 3-185 (211)
93 1tf7_A KAIC; homohexamer, hexa 99.8 1.2E-22 4E-27 231.3 -5.5 171 467-668 20-209 (525)
94 1cr0_A DNA primase/helicase; R 99.8 4.7E-21 1.6E-25 202.1 7.0 182 472-671 22-237 (296)
95 4ad8_A DNA repair protein RECN 99.8 2.4E-20 8.2E-25 211.9 12.9 76 594-669 395-473 (517)
96 2o8b_B DNA mismatch repair pro 99.8 9E-21 3.1E-25 228.8 8.0 171 457-678 749-938 (1022)
97 2jeo_A Uridine-cytidine kinase 99.8 4.9E-22 1.7E-26 203.9 -3.5 169 470-683 10-188 (245)
98 1tf7_A KAIC; homohexamer, hexa 99.8 1.9E-20 6.5E-25 213.0 7.4 169 459-670 258-444 (525)
99 3qkt_A DNA double-strand break 99.8 6.3E-19 2.2E-23 189.5 17.7 79 593-671 246-333 (339)
100 1pzn_A RAD51, DNA repair and r 99.8 3.9E-21 1.3E-25 207.3 -0.4 174 462-681 111-314 (349)
101 4a74_A DNA repair and recombin 99.8 8E-21 2.7E-25 191.8 -0.5 165 461-670 4-201 (231)
102 1w1w_A Structural maintenance 99.8 3.1E-19 1.1E-23 198.1 12.2 73 595-667 333-410 (430)
103 2r6f_A Excinuclease ABC subuni 99.8 1.6E-19 5.5E-24 212.9 10.3 152 509-683 432-601 (972)
104 1ewq_A DNA mismatch repair pro 99.8 6.9E-20 2.4E-24 214.9 5.9 145 456-660 548-704 (765)
105 1odf_A YGR205W, hypothetical 3 99.8 1.7E-21 5.6E-26 204.6 -7.6 130 483-630 29-169 (290)
106 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 9.5E-19 3.3E-23 165.0 11.1 88 584-671 41-142 (148)
107 3szr_A Interferon-induced GTP- 99.8 6.2E-21 2.1E-25 220.1 -5.5 189 458-681 10-236 (608)
108 3thx_A DNA mismatch repair pro 99.8 2.3E-18 7.7E-23 205.5 14.9 165 457-680 630-811 (934)
109 1pui_A ENGB, probable GTP-bind 99.8 2.2E-20 7.4E-25 185.9 -2.3 169 459-642 4-197 (210)
110 2ehv_A Hypothetical protein PH 99.8 9.8E-21 3.3E-25 193.6 -5.1 181 458-667 6-206 (251)
111 2ygr_A Uvrabc system protein A 99.8 3.3E-18 1.1E-22 202.5 15.1 133 543-683 465-618 (993)
112 2qag_C Septin-7; cell cycle, c 99.7 9.5E-20 3.2E-24 200.1 -1.5 166 457-657 10-180 (418)
113 1rj9_A FTSY, signal recognitio 99.7 3.8E-19 1.3E-23 187.8 3.2 151 483-657 100-261 (304)
114 3jvv_A Twitching mobility prot 99.7 5.7E-19 1.9E-23 190.3 4.1 146 462-669 92-246 (356)
115 3kta_B Chromosome segregation 99.7 1.8E-17 6.3E-22 160.3 10.8 78 594-671 63-146 (173)
116 3c8u_A Fructokinase; YP_612366 99.7 1.2E-20 4E-25 188.7 -15.1 118 482-623 19-140 (208)
117 2qnr_A Septin-2, protein NEDD5 99.7 5.2E-19 1.8E-23 186.9 -3.6 163 462-656 2-169 (301)
118 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.7E-17 6E-22 167.2 4.8 167 471-670 8-193 (235)
119 1s96_A Guanylate kinase, GMP k 99.7 6.7E-18 2.3E-22 170.0 0.3 142 480-683 11-161 (219)
120 2cvh_A DNA repair and recombin 99.7 1.2E-16 4E-21 160.0 8.8 152 472-669 6-185 (220)
121 3thx_B DNA mismatch repair pro 99.6 1.2E-16 4.2E-21 190.0 8.2 156 457-663 639-805 (918)
122 1nij_A Hypothetical protein YJ 99.6 4.5E-19 1.5E-23 189.0 -11.6 152 486-654 5-189 (318)
123 2qag_B Septin-6, protein NEDD5 99.6 3E-17 1E-21 179.5 2.5 181 458-653 16-218 (427)
124 1zp6_A Hypothetical protein AT 99.6 3.4E-18 1.1E-22 167.8 -4.8 161 481-663 5-169 (191)
125 1nlf_A Regulatory protein REPA 99.6 1E-15 3.5E-20 159.8 10.1 151 481-657 26-184 (279)
126 1wb9_A DNA mismatch repair pro 99.6 3.3E-16 1.1E-20 184.8 6.2 165 457-675 576-751 (800)
127 1n0w_A DNA repair protein RAD5 99.6 1.2E-15 4E-20 155.1 7.1 148 481-669 20-209 (243)
128 2qm8_A GTPase/ATPase; G protei 99.6 1.6E-17 5.5E-22 178.2 -9.9 179 459-642 30-259 (337)
129 2yhs_A FTSY, cell division pro 99.5 9.2E-15 3.2E-19 161.8 6.9 150 475-652 283-447 (503)
130 2oap_1 GSPE-2, type II secreti 99.5 1.8E-16 6.2E-21 178.6 -9.7 174 472-661 247-458 (511)
131 1htw_A HI0065; nucleotide-bind 99.5 1.6E-16 5.4E-21 151.7 -8.8 88 461-555 10-97 (158)
132 1p9r_A General secretion pathw 99.5 1E-16 3.4E-21 176.2 -12.2 141 460-618 145-314 (418)
133 1sxj_E Activator 1 40 kDa subu 99.5 2.3E-14 8E-19 154.2 5.6 138 486-656 37-176 (354)
134 2bdt_A BH3686; alpha-beta prot 99.5 1.6E-16 5.4E-21 155.8 -10.9 162 485-681 2-183 (189)
135 3auy_A DNA double-strand break 99.5 2.5E-13 8.5E-18 147.7 12.8 74 594-667 279-359 (371)
136 3e70_C DPA, signal recognition 99.4 5.7E-14 1.9E-18 149.6 6.6 163 481-672 125-307 (328)
137 2rcn_A Probable GTPase ENGC; Y 99.4 4.5E-14 1.5E-18 151.4 5.1 123 473-611 204-329 (358)
138 3lda_A DNA repair protein RAD5 99.4 1.2E-13 3.9E-18 151.0 7.6 147 481-670 174-364 (400)
139 2bbw_A Adenylate kinase 4, AK4 99.4 4E-15 1.4E-19 152.3 -4.7 157 484-668 26-218 (246)
140 2kjq_A DNAA-related protein; s 99.4 2.7E-13 9.2E-18 128.0 5.5 92 473-653 29-124 (149)
141 3lnc_A Guanylate kinase, GMP k 99.4 5.1E-16 1.7E-20 157.4 -14.5 147 472-642 14-177 (231)
142 1cke_A CK, MSSA, protein (cyti 99.3 1.1E-14 3.7E-19 146.7 -8.5 129 484-624 4-151 (227)
143 1sq5_A Pantothenate kinase; P- 99.3 2.1E-14 7.2E-19 152.1 -7.0 139 457-628 36-199 (308)
144 3ec2_A DNA replication protein 99.3 7.5E-13 2.6E-17 128.5 3.9 110 479-655 32-144 (180)
145 2yv5_A YJEQ protein; hydrolase 99.3 2.3E-13 7.7E-18 143.7 -1.5 115 480-608 160-300 (302)
146 2x8a_A Nuclear valosin-contain 99.2 5.5E-15 1.9E-19 154.0 -15.6 145 472-639 33-191 (274)
147 3tr0_A Guanylate kinase, GMP k 99.2 3.5E-12 1.2E-16 126.0 3.5 139 479-621 1-171 (205)
148 4e22_A Cytidylate kinase; P-lo 99.2 6E-13 2.1E-17 136.8 -3.7 111 473-593 18-146 (252)
149 1u0l_A Probable GTPase ENGC; p 99.2 3.2E-12 1.1E-16 134.8 1.3 103 480-583 164-290 (301)
150 1ls1_A Signal recognition part 99.2 2E-11 7E-16 128.2 7.1 142 459-651 77-219 (295)
151 1udx_A The GTP-binding protein 99.2 1.7E-12 5.7E-17 142.4 -2.0 153 475-652 147-306 (416)
152 2px0_A Flagellar biosynthesis 99.1 8.3E-11 2.8E-15 123.6 8.0 138 483-673 103-246 (296)
153 3a00_A Guanylate kinase, GMP k 99.1 2.4E-12 8.3E-17 125.8 -4.0 127 485-621 1-169 (186)
154 1vma_A Cell division protein F 99.1 7.4E-11 2.5E-15 124.3 7.1 98 478-624 97-197 (306)
155 3euj_A Chromosome partition pr 99.1 3.1E-11 1.1E-15 134.1 4.1 80 460-543 8-95 (483)
156 1in4_A RUVB, holliday junction 99.0 3.2E-13 1.1E-17 144.7 -16.7 156 459-641 19-192 (334)
157 1iy2_A ATP-dependent metallopr 99.0 7.8E-13 2.7E-17 137.8 -13.5 137 460-623 51-195 (278)
158 3ney_A 55 kDa erythrocyte memb 99.0 6.5E-11 2.2E-15 116.5 -0.2 81 480-569 14-107 (197)
159 1oix_A RAS-related protein RAB 98.9 5.5E-11 1.9E-15 116.4 -1.0 143 487-640 31-188 (191)
160 2dr3_A UPF0273 protein PH0284; 98.9 1.3E-10 4.4E-15 117.8 1.2 167 473-668 10-196 (247)
161 1t9h_A YLOQ, probable GTPase E 98.9 1.6E-10 5.5E-15 121.6 1.7 95 480-576 168-287 (307)
162 1ixz_A ATP-dependent metallopr 98.9 1.3E-12 4.3E-17 134.1 -14.4 139 459-624 26-172 (254)
163 1qhl_A Protein (cell division 98.9 3.6E-11 1.2E-15 121.1 -3.5 75 458-541 9-91 (227)
164 2ius_A DNA translocase FTSK; n 98.9 6.3E-11 2.1E-15 132.6 -2.0 164 477-655 159-343 (512)
165 2zr9_A Protein RECA, recombina 98.9 1.9E-09 6.4E-14 115.8 9.3 143 481-676 57-237 (349)
166 3k1j_A LON protease, ATP-depen 98.9 3.9E-11 1.3E-15 138.6 -4.6 158 471-640 46-227 (604)
167 2qt1_A Nicotinamide riboside k 98.9 2.2E-10 7.7E-15 113.5 1.2 103 480-622 16-118 (207)
168 1kgd_A CASK, peripheral plasma 98.9 1.1E-10 3.8E-15 113.4 -1.6 81 483-570 3-94 (180)
169 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 4.6E-12 1.6E-16 137.6 -13.6 169 481-677 16-208 (392)
170 2r6a_A DNAB helicase, replicat 98.8 5.9E-09 2E-13 116.2 9.5 178 473-672 191-402 (454)
171 2dy1_A Elongation factor G; tr 98.8 6.4E-10 2.2E-14 129.5 1.1 132 479-656 3-138 (665)
172 1svm_A Large T antigen; AAA+ f 98.8 5.2E-11 1.8E-15 128.9 -9.1 138 472-624 156-312 (377)
173 3tau_A Guanylate kinase, GMP k 98.7 4.4E-10 1.5E-14 111.8 -3.9 72 483-558 6-88 (208)
174 2f9l_A RAB11B, member RAS onco 98.7 4.1E-09 1.4E-13 103.4 2.5 137 487-641 7-165 (199)
175 3nwj_A ATSK2; P loop, shikimat 98.7 2.4E-09 8.2E-14 109.5 -0.4 52 458-509 17-72 (250)
176 2j41_A Guanylate kinase; GMP, 98.6 2.9E-09 1E-13 104.9 -1.5 61 480-543 1-61 (207)
177 3cr8_A Sulfate adenylyltranfer 98.6 2.8E-09 9.6E-14 120.8 -2.6 72 480-556 364-447 (552)
178 2ce7_A Cell division protein F 98.6 7.9E-08 2.7E-12 107.0 8.1 114 473-657 39-167 (476)
179 2qtf_A Protein HFLX, GTP-bindi 98.6 5.4E-08 1.9E-12 105.0 6.4 143 487-642 181-352 (364)
180 3uie_A Adenylyl-sulfate kinase 98.5 2.6E-09 8.7E-14 105.4 -4.5 60 463-524 4-65 (200)
181 3t34_A Dynamin-related protein 98.5 1.5E-07 5E-12 101.6 7.7 161 472-652 24-212 (360)
182 4eun_A Thermoresistant glucoki 98.5 1.5E-08 5E-13 99.9 -0.4 60 479-544 23-83 (200)
183 3kta_A Chromosome segregation 98.5 5.9E-09 2E-13 100.8 -3.4 66 476-542 18-89 (182)
184 1zu4_A FTSY; GTPase, signal re 98.5 4.5E-08 1.6E-12 103.7 2.8 72 474-545 94-175 (320)
185 3ice_A Transcription terminati 98.4 2.9E-08 9.8E-13 106.1 0.7 54 456-509 131-198 (422)
186 1uf9_A TT1252 protein; P-loop, 98.4 2.3E-09 7.9E-14 105.3 -8.8 83 485-579 8-94 (203)
187 2dhr_A FTSH; AAA+ protein, hex 98.4 5.6E-09 1.9E-13 117.0 -6.8 139 460-625 42-188 (499)
188 1jjv_A Dephospho-COA kinase; P 98.4 1.1E-07 3.8E-12 93.7 3.0 69 596-667 60-131 (206)
189 2z43_A DNA repair and recombin 98.4 1.4E-07 4.7E-12 100.3 3.6 28 481-508 103-130 (324)
190 3tqc_A Pantothenate kinase; bi 98.3 3.1E-08 1.1E-12 104.8 -1.9 123 472-627 73-210 (321)
191 3hr8_A Protein RECA; alpha and 98.3 4.7E-07 1.6E-11 97.0 6.4 59 481-542 57-116 (356)
192 2ffh_A Protein (FFH); SRP54, s 98.3 1.2E-06 4E-11 96.0 9.5 162 460-652 78-246 (425)
193 3vaa_A Shikimate kinase, SK; s 98.3 2.4E-07 8.1E-12 91.1 3.5 43 467-509 5-49 (199)
194 2e87_A Hypothetical protein PH 98.3 8.6E-07 2.9E-11 95.4 7.7 123 486-655 168-293 (357)
195 2vp4_A Deoxynucleoside kinase; 98.2 2.5E-08 8.7E-13 100.6 -5.1 65 478-546 13-87 (230)
196 2xau_A PRE-mRNA-splicing facto 98.2 1.1E-06 3.9E-11 103.8 7.7 64 595-658 190-256 (773)
197 3m6a_A ATP-dependent protease 98.2 3.4E-07 1.2E-11 104.1 1.2 58 461-520 86-143 (543)
198 2eyu_A Twitching motility prot 98.2 6E-07 2.1E-11 92.3 2.8 59 603-667 88-146 (261)
199 4a1f_A DNAB helicase, replicat 98.1 3.1E-06 1E-10 90.0 6.7 104 473-627 34-141 (338)
200 1fnn_A CDC6P, cell division co 98.1 1.3E-05 4.6E-10 86.3 11.6 45 612-657 124-172 (389)
201 3kl4_A SRP54, signal recogniti 98.1 3.3E-06 1.1E-10 92.7 6.8 40 484-523 96-135 (433)
202 1rz3_A Hypothetical protein rb 98.0 1.3E-06 4.3E-11 86.1 1.2 49 481-529 18-66 (201)
203 1knq_A Gluconate kinase; ALFA/ 98.0 1.1E-06 3.8E-11 84.0 0.6 38 483-524 6-43 (175)
204 1v5w_A DMC1, meiotic recombina 97.9 3.1E-06 1.1E-10 90.5 2.3 28 481-508 118-145 (343)
205 3b9p_A CG5977-PA, isoform A; A 97.9 2.5E-05 8.5E-10 81.3 8.6 71 597-667 97-187 (297)
206 1sxj_C Activator 1 40 kDa subu 97.9 2E-06 6.7E-11 91.8 -0.2 44 471-514 30-75 (340)
207 3r20_A Cytidylate kinase; stru 97.8 2.1E-06 7.1E-11 86.6 -0.4 70 485-554 9-96 (233)
208 2pez_A Bifunctional 3'-phospho 97.8 1.6E-06 5.4E-11 83.4 -1.5 41 483-524 3-45 (179)
209 1f6b_A SAR1; gtpases, N-termin 97.8 5.4E-06 1.9E-10 81.0 2.2 57 465-522 6-70 (198)
210 2z4s_A Chromosomal replication 97.8 2E-05 7E-10 87.1 6.0 65 613-677 194-263 (440)
211 1ypw_A Transitional endoplasmi 97.8 3.6E-06 1.2E-10 100.0 -0.1 33 479-511 232-264 (806)
212 3lxx_A GTPase IMAP family memb 97.8 0.00012 4.3E-09 73.5 11.3 29 487-515 31-59 (239)
213 1lv7_A FTSH; alpha/beta domain 97.7 0.0001 3.4E-09 75.0 9.9 44 475-522 37-80 (257)
214 1u94_A RECA protein, recombina 97.7 9.7E-05 3.3E-09 79.2 9.5 35 473-508 49-86 (356)
215 3llm_A ATP-dependent RNA helic 97.6 4.7E-05 1.6E-09 76.6 6.2 133 481-649 72-213 (235)
216 3bh0_A DNAB-like replicative h 97.6 7.6E-06 2.6E-10 86.5 0.3 107 473-626 56-164 (315)
217 1ega_A Protein (GTP-binding pr 97.6 2.5E-05 8.5E-10 81.9 4.2 144 484-658 7-163 (301)
218 2qby_A CDC6 homolog 1, cell di 97.6 1.6E-05 5.4E-10 85.3 2.6 31 483-513 43-73 (386)
219 1mky_A Probable GTP-binding pr 97.6 3E-05 1E-09 85.8 4.9 194 486-694 181-418 (439)
220 1m7g_A Adenylylsulfate kinase; 97.6 7.8E-06 2.7E-10 80.9 -0.8 44 480-523 20-65 (211)
221 1l8q_A Chromosomal replication 97.6 4.7E-05 1.6E-09 80.3 5.1 29 484-512 36-64 (324)
222 1kag_A SKI, shikimate kinase I 97.5 2.7E-05 9.3E-10 74.0 2.6 33 484-520 3-35 (173)
223 1j8m_F SRP54, signal recogniti 97.5 0.00014 4.6E-09 76.1 7.3 50 476-526 89-139 (297)
224 2p67_A LAO/AO transport system 97.5 1.4E-05 4.7E-10 85.5 -0.4 53 472-524 43-95 (341)
225 4eaq_A DTMP kinase, thymidylat 97.5 2.4E-05 8.3E-10 78.6 1.4 43 475-518 13-58 (229)
226 2qor_A Guanylate kinase; phosp 97.5 1.4E-05 4.7E-10 78.6 -0.4 69 481-552 8-87 (204)
227 4fcw_A Chaperone protein CLPB; 97.4 0.00012 4.1E-09 76.3 5.5 32 485-516 47-78 (311)
228 3bos_A Putative DNA replicatio 97.4 7.3E-05 2.5E-09 74.4 3.5 28 483-510 50-77 (242)
229 2w58_A DNAI, primosome compone 97.4 0.00016 5.5E-09 70.5 5.8 27 486-512 55-81 (202)
230 2jaq_A Deoxyguanosine kinase; 97.4 5.9E-06 2E-10 80.6 -4.8 70 487-556 2-87 (205)
231 1m2o_B GTP-binding protein SAR 97.3 0.00011 3.7E-09 71.0 4.1 48 473-521 12-67 (190)
232 3cf0_A Transitional endoplasmi 97.3 0.00032 1.1E-08 73.2 8.0 31 479-509 43-73 (301)
233 3h4m_A Proteasome-activating n 97.3 0.00027 9.3E-09 72.8 7.3 28 482-509 48-75 (285)
234 2www_A Methylmalonic aciduria 97.3 5E-05 1.7E-09 81.3 1.1 43 483-525 72-114 (349)
235 2gj8_A MNME, tRNA modification 97.3 0.00015 5.1E-09 68.9 4.2 27 483-509 2-28 (172)
236 1njg_A DNA polymerase III subu 97.3 2E-05 7E-10 78.1 -2.1 45 612-657 125-169 (250)
237 1sxj_D Activator 1 41 kDa subu 97.2 4.3E-05 1.5E-09 81.2 -0.5 43 613-656 133-175 (353)
238 3n70_A Transport activator; si 97.2 0.001 3.5E-08 61.4 8.8 31 483-513 22-52 (145)
239 4dcu_A GTP-binding protein ENG 97.1 0.00047 1.6E-08 76.5 6.6 57 598-657 87-144 (456)
240 1y63_A LMAJ004144AAA protein; 97.1 0.00021 7.1E-09 68.9 3.2 32 477-508 2-33 (184)
241 3uk6_A RUVB-like 2; hexameric 97.1 0.00053 1.8E-08 73.3 6.2 40 482-521 67-106 (368)
242 2i1q_A DNA repair and recombin 97.0 0.0002 6.8E-09 75.6 2.7 27 481-507 94-120 (322)
243 1xp8_A RECA protein, recombina 97.0 0.0012 4.2E-08 70.8 8.5 27 481-507 70-96 (366)
244 2qag_A Septin-2, protein NEDD5 97.0 7.9E-05 2.7E-09 80.1 -1.0 58 456-520 15-72 (361)
245 2p5t_B PEZT; postsegregational 97.0 0.00018 6.2E-09 73.2 1.4 42 481-524 28-69 (253)
246 2yvu_A Probable adenylyl-sulfa 96.9 0.00021 7.1E-09 68.8 1.5 41 480-520 8-49 (186)
247 2q6t_A DNAB replication FORK h 96.9 0.00057 1.9E-08 75.5 5.2 36 474-509 189-224 (444)
248 3t61_A Gluconokinase; PSI-biol 96.9 0.00021 7.1E-09 69.8 1.0 32 485-520 18-49 (202)
249 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00059 2E-08 63.6 3.7 32 478-510 17-49 (149)
250 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.0038 1.3E-07 63.0 10.0 27 483-509 37-63 (262)
251 2wji_A Ferrous iron transport 96.8 0.00094 3.2E-08 62.6 5.0 24 486-509 4-27 (165)
252 1lw7_A Transcriptional regulat 96.8 1.6E-05 5.5E-10 85.7 -8.4 86 595-682 258-355 (365)
253 2ohf_A Protein OLA1, GTP-bindi 96.8 0.0006 2E-08 73.8 3.6 41 481-521 18-69 (396)
254 1np6_A Molybdopterin-guanine d 96.8 0.00043 1.5E-08 66.4 2.0 38 485-522 6-46 (174)
255 2wjg_A FEOB, ferrous iron tran 96.7 0.0007 2.4E-08 64.6 3.5 22 487-508 9-30 (188)
256 3cmw_A Protein RECA, recombina 96.7 0.0038 1.3E-07 78.6 10.3 39 482-520 729-768 (1706)
257 3syl_A Protein CBBX; photosynt 96.6 0.0085 2.9E-07 62.1 11.3 26 484-509 66-91 (309)
258 3dm5_A SRP54, signal recogniti 96.6 0.0052 1.8E-07 67.4 9.9 35 484-518 99-133 (443)
259 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0017 5.8E-08 68.0 5.7 28 480-507 118-145 (331)
260 2if2_A Dephospho-COA kinase; a 96.6 0.00087 3E-08 65.3 3.3 21 487-507 3-23 (204)
261 3d8b_A Fidgetin-like protein 1 96.6 0.004 1.4E-07 66.6 8.7 27 483-509 115-141 (357)
262 2ewv_A Twitching motility prot 96.6 0.00075 2.6E-08 72.8 2.9 58 603-666 199-256 (372)
263 2zej_A Dardarin, leucine-rich 96.6 0.00096 3.3E-08 63.8 3.4 27 487-513 4-30 (184)
264 4ag6_A VIRB4 ATPase, type IV s 96.5 0.00099 3.4E-08 72.2 3.3 58 612-669 261-335 (392)
265 3ihw_A Centg3; RAS, centaurin, 96.5 0.0021 7.2E-08 61.5 5.3 36 487-522 22-66 (184)
266 2v1u_A Cell division control p 96.5 0.00047 1.6E-08 73.8 0.7 28 483-510 42-69 (387)
267 2chg_A Replication factor C sm 96.5 0.0026 9E-08 61.7 6.0 43 612-655 101-143 (226)
268 3t15_A Ribulose bisphosphate c 96.5 0.0031 1E-07 65.5 6.7 28 482-509 33-60 (293)
269 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00046 1.6E-08 73.3 0.4 37 473-509 10-48 (359)
270 1qhx_A CPT, protein (chloramph 96.5 0.0014 4.7E-08 62.2 3.7 27 484-510 2-28 (178)
271 3cm0_A Adenylate kinase; ATP-b 96.5 0.0011 3.8E-08 63.4 2.9 27 483-509 2-28 (186)
272 1gtv_A TMK, thymidylate kinase 96.4 0.0004 1.4E-08 68.1 -0.8 88 487-594 2-97 (214)
273 2b8t_A Thymidine kinase; deoxy 96.4 0.0026 9E-08 63.3 5.1 51 613-667 89-150 (223)
274 3co5_A Putative two-component 96.3 0.0057 1.9E-07 56.2 6.7 28 483-510 25-52 (143)
275 3kb2_A SPBC2 prophage-derived 96.3 0.0018 6E-08 60.9 3.3 23 487-509 3-25 (173)
276 1ypw_A Transitional endoplasmi 96.3 0.00051 1.7E-08 81.6 -0.8 33 478-510 504-536 (806)
277 2v54_A DTMP kinase, thymidylat 96.3 0.0021 7.2E-08 62.3 3.7 27 483-509 2-28 (204)
278 1kht_A Adenylate kinase; phosp 96.3 0.0021 7.1E-08 61.5 3.5 26 484-509 2-27 (192)
279 3trf_A Shikimate kinase, SK; a 96.3 0.0021 7.2E-08 61.4 3.5 26 484-509 4-29 (185)
280 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.015 5.1E-07 61.2 10.2 28 482-509 42-69 (322)
281 2orw_A Thymidine kinase; TMTK, 96.2 0.0023 8E-08 61.7 3.7 25 484-508 2-27 (184)
282 1vht_A Dephospho-COA kinase; s 96.2 0.0025 8.4E-08 62.9 3.7 32 484-520 3-34 (218)
283 1ko7_A HPR kinase/phosphatase; 96.2 0.0017 5.6E-08 68.0 2.4 34 473-507 133-166 (314)
284 2qp9_X Vacuolar protein sortin 96.2 0.011 3.8E-07 63.0 9.1 28 482-509 81-108 (355)
285 1fzq_A ADP-ribosylation factor 96.2 0.0021 7.3E-08 61.2 3.1 30 485-514 16-49 (181)
286 1gvn_B Zeta; postsegregational 96.2 0.0024 8.3E-08 66.2 3.6 36 483-520 31-66 (287)
287 2rhm_A Putative kinase; P-loop 96.2 0.0023 7.8E-08 61.4 3.1 27 483-509 3-29 (193)
288 2dby_A GTP-binding protein; GD 96.1 0.0024 8.2E-08 68.6 3.5 59 487-576 3-61 (368)
289 1q3t_A Cytidylate kinase; nucl 96.1 0.0026 8.8E-08 63.7 3.4 27 482-508 13-39 (236)
290 3qks_A DNA double-strand break 96.1 0.003 1E-07 61.9 3.7 28 478-506 17-44 (203)
291 3lw7_A Adenylate kinase relate 96.1 0.0028 9.4E-08 59.4 3.2 20 486-505 2-21 (179)
292 2r62_A Cell division protease 96.1 0.0016 5.5E-08 66.3 1.6 30 477-508 38-67 (268)
293 1jal_A YCHF protein; nucleotid 96.1 0.0044 1.5E-07 66.3 5.0 36 485-520 2-48 (363)
294 3zvl_A Bifunctional polynucleo 96.1 0.018 6.1E-07 62.9 10.0 36 481-520 254-289 (416)
295 3iij_A Coilin-interacting nucl 96.1 0.0021 7.3E-08 61.2 2.3 27 483-509 9-35 (180)
296 2c95_A Adenylate kinase 1; tra 96.0 0.003 1E-07 60.7 3.2 27 483-509 7-33 (196)
297 2wwf_A Thymidilate kinase, put 96.0 0.0032 1.1E-07 61.4 3.4 28 482-509 7-34 (212)
298 3bgw_A DNAB-like replicative h 96.0 0.0056 1.9E-07 67.5 5.5 34 474-507 186-219 (444)
299 1ex7_A Guanylate kinase; subst 96.0 0.0026 9.1E-08 61.5 2.5 73 488-569 4-89 (186)
300 4a82_A Cystic fibrosis transme 96.0 2.3 7.9E-05 48.1 27.3 10 475-484 342-351 (578)
301 1nn5_A Similar to deoxythymidy 96.0 0.0035 1.2E-07 61.2 3.4 28 482-509 6-33 (215)
302 2plr_A DTMP kinase, probable t 95.9 0.0037 1.3E-07 60.8 3.4 28 484-511 3-30 (213)
303 1hqc_A RUVB; extended AAA-ATPa 95.9 0.014 4.9E-07 60.8 8.2 26 484-509 37-62 (324)
304 2bwj_A Adenylate kinase 5; pho 95.9 0.0016 5.4E-08 62.9 0.7 29 481-509 8-36 (199)
305 1jr3_A DNA polymerase III subu 95.9 0.011 3.6E-07 63.0 7.1 42 613-655 119-160 (373)
306 2qby_B CDC6 homolog 3, cell di 95.9 0.0038 1.3E-07 66.8 3.6 26 484-509 44-69 (384)
307 3pfi_A Holliday junction ATP-d 95.8 0.024 8.3E-07 59.5 9.6 24 486-509 56-79 (338)
308 1via_A Shikimate kinase; struc 95.8 0.0035 1.2E-07 59.4 2.7 23 487-509 6-28 (175)
309 1xjc_A MOBB protein homolog; s 95.8 0.0028 9.4E-08 60.4 1.6 36 486-521 5-43 (169)
310 3io5_A Recombination and repai 95.7 0.0085 2.9E-07 62.6 5.3 26 482-508 26-52 (333)
311 1tev_A UMP-CMP kinase; ploop, 95.7 0.0049 1.7E-07 59.0 3.3 101 484-603 2-103 (196)
312 1ly1_A Polynucleotide kinase; 95.7 0.0051 1.7E-07 58.1 3.3 31 486-519 3-33 (181)
313 2ze6_A Isopentenyl transferase 95.7 0.0044 1.5E-07 62.9 2.9 23 487-509 3-25 (253)
314 3cmw_A Protein RECA, recombina 95.7 0.02 6.8E-07 72.2 9.1 34 473-507 369-405 (1706)
315 2vli_A Antibiotic resistance p 95.7 0.004 1.4E-07 59.1 2.3 27 483-509 3-29 (183)
316 2zan_A Vacuolar protein sortin 95.6 0.027 9.1E-07 62.0 9.2 28 482-509 164-191 (444)
317 1aky_A Adenylate kinase; ATP:A 95.6 0.0062 2.1E-07 60.1 3.7 27 483-509 2-28 (220)
318 2fn4_A P23, RAS-related protei 95.6 0.0096 3.3E-07 55.8 4.8 22 487-508 11-32 (181)
319 1nks_A Adenylate kinase; therm 95.6 0.0056 1.9E-07 58.5 3.0 24 487-510 3-26 (194)
320 2lkc_A Translation initiation 95.5 0.013 4.5E-07 54.8 5.5 25 483-507 6-30 (178)
321 3hu3_A Transitional endoplasmi 95.5 0.023 8E-07 63.3 8.3 28 482-509 235-262 (489)
322 3cbq_A GTP-binding protein REM 95.5 0.0049 1.7E-07 59.6 2.3 22 487-508 25-46 (195)
323 2cdn_A Adenylate kinase; phosp 95.5 0.0074 2.5E-07 58.5 3.6 26 484-509 19-44 (201)
324 2erx_A GTP-binding protein DI- 95.5 0.012 4.2E-07 54.4 5.0 21 487-507 5-25 (172)
325 1zuh_A Shikimate kinase; alpha 95.5 0.0073 2.5E-07 56.7 3.4 24 485-508 7-30 (168)
326 2iyv_A Shikimate kinase, SK; t 95.4 0.0066 2.3E-07 57.9 2.9 25 485-509 2-26 (184)
327 3fb4_A Adenylate kinase; psych 95.4 0.0071 2.4E-07 59.3 3.2 23 487-509 2-24 (216)
328 1tue_A Replication protein E1; 95.4 0.011 3.9E-07 57.7 4.5 28 482-509 55-82 (212)
329 1zd8_A GTP:AMP phosphotransfer 95.4 0.0073 2.5E-07 59.9 3.3 27 483-509 5-31 (227)
330 3u61_B DNA polymerase accessor 95.4 0.013 4.5E-07 61.3 5.4 43 613-656 105-148 (324)
331 2z0h_A DTMP kinase, thymidylat 95.4 0.0075 2.6E-07 57.9 3.2 23 487-509 2-24 (197)
332 3cmu_A Protein RECA, recombina 95.3 0.033 1.1E-06 71.2 9.6 37 471-507 1065-1103(2050)
333 1e6c_A Shikimate kinase; phosp 95.3 0.0075 2.5E-07 56.7 2.9 24 486-509 3-26 (173)
334 1zak_A Adenylate kinase; ATP:A 95.3 0.0072 2.5E-07 59.7 2.9 26 484-509 4-29 (222)
335 2r8r_A Sensor protein; KDPD, P 95.3 0.0088 3E-07 59.5 3.5 41 612-652 83-125 (228)
336 1d2n_A N-ethylmaleimide-sensit 95.3 0.016 5.5E-07 59.0 5.6 27 482-508 61-87 (272)
337 1ukz_A Uridylate kinase; trans 95.3 0.0082 2.8E-07 58.2 3.2 26 484-509 14-39 (203)
338 3pxi_A Negative regulator of g 95.3 0.038 1.3E-06 65.1 9.6 33 487-519 523-556 (758)
339 2grj_A Dephospho-COA kinase; T 95.3 0.0083 2.8E-07 58.3 3.2 23 486-508 13-35 (192)
340 3dl0_A Adenylate kinase; phosp 95.3 0.0066 2.2E-07 59.6 2.5 23 487-509 2-24 (216)
341 2pt5_A Shikimate kinase, SK; a 95.3 0.0087 3E-07 56.0 3.3 23 487-509 2-24 (168)
342 3cmu_A Protein RECA, recombina 95.3 0.043 1.5E-06 70.2 10.3 39 482-520 380-419 (2050)
343 3ake_A Cytidylate kinase; CMP 95.3 0.0078 2.7E-07 58.4 3.0 23 487-509 4-26 (208)
344 2ew1_A RAS-related protein RAB 95.3 0.014 4.8E-07 56.7 4.8 21 487-507 28-48 (201)
345 3pvs_A Replication-associated 95.2 0.024 8.2E-07 62.4 7.1 36 476-511 39-76 (447)
346 3tlx_A Adenylate kinase 2; str 95.2 0.0093 3.2E-07 60.0 3.4 27 483-509 27-53 (243)
347 2pbr_A DTMP kinase, thymidylat 95.2 0.0093 3.2E-07 57.0 3.2 23 487-509 2-24 (195)
348 3eie_A Vacuolar protein sortin 95.2 0.014 4.8E-07 61.3 4.8 26 483-508 49-74 (322)
349 1qf9_A UMP/CMP kinase, protein 95.2 0.0084 2.9E-07 57.2 2.8 25 485-509 6-30 (194)
350 1a7j_A Phosphoribulokinase; tr 95.2 0.0053 1.8E-07 63.7 1.4 26 484-509 4-29 (290)
351 1ksh_A ARF-like protein 2; sma 95.2 0.021 7.1E-07 54.0 5.5 25 483-507 16-40 (186)
352 1z0j_A RAB-22, RAS-related pro 95.1 0.014 4.9E-07 53.9 4.2 23 487-509 8-30 (170)
353 1z2a_A RAS-related protein RAB 95.1 0.01 3.4E-07 54.9 3.0 22 487-508 7-28 (168)
354 1uj2_A Uridine-cytidine kinase 95.1 0.01 3.5E-07 60.0 3.2 24 486-509 23-46 (252)
355 3lxw_A GTPase IMAP family memb 95.1 0.01 3.6E-07 59.8 3.3 58 598-656 87-151 (247)
356 3q72_A GTP-binding protein RAD 95.1 0.0096 3.3E-07 55.1 2.8 23 487-509 4-26 (166)
357 3a8t_A Adenylate isopentenyltr 95.1 0.012 4.2E-07 62.0 3.8 28 483-510 38-65 (339)
358 3vfd_A Spastin; ATPase, microt 95.0 0.051 1.8E-06 58.5 8.8 27 483-509 146-172 (389)
359 1upt_A ARL1, ADP-ribosylation 95.0 0.024 8.2E-07 52.5 5.4 23 485-507 7-29 (171)
360 1sxj_B Activator 1 37 kDa subu 95.0 0.02 6.7E-07 59.4 5.3 42 613-655 107-148 (323)
361 3clv_A RAB5 protein, putative; 95.0 0.015 5.1E-07 55.5 4.0 22 487-508 9-30 (208)
362 2nzj_A GTP-binding protein REM 95.0 0.012 4.2E-07 54.7 3.3 23 487-509 6-28 (175)
363 1r2q_A RAS-related protein RAB 95.0 0.017 5.7E-07 53.4 4.2 21 487-507 8-28 (170)
364 2oil_A CATX-8, RAS-related pro 95.0 0.015 5.3E-07 55.4 4.0 21 487-507 27-47 (193)
365 3qf4_A ABC transporter, ATP-bi 95.0 6.4 0.00022 44.5 33.9 11 460-470 358-368 (587)
366 3q85_A GTP-binding protein REM 95.0 0.013 4.3E-07 54.4 3.3 23 487-509 4-26 (169)
367 1kao_A RAP2A; GTP-binding prot 94.9 0.012 4.1E-07 54.1 3.1 21 487-507 5-25 (167)
368 2bcg_Y Protein YP2, GTP-bindin 94.9 0.02 6.7E-07 55.3 4.7 21 487-507 10-30 (206)
369 2ged_A SR-beta, signal recogni 94.9 0.012 4.1E-07 56.1 3.1 26 484-509 47-72 (193)
370 2dyk_A GTP-binding protein; GT 94.9 0.013 4.4E-07 53.8 3.1 23 487-509 3-25 (161)
371 2f6r_A COA synthase, bifunctio 94.9 0.012 4E-07 60.7 3.1 23 485-507 75-97 (281)
372 1u8z_A RAS-related protein RAL 94.9 0.013 4.3E-07 54.0 3.0 21 487-507 6-26 (168)
373 2ce2_X GTPase HRAS; signaling 94.9 0.012 4E-07 54.0 2.8 22 487-508 5-26 (166)
374 3iby_A Ferrous iron transport 94.9 0.012 4.2E-07 59.7 3.2 23 487-509 3-25 (256)
375 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.014 4.6E-07 59.4 3.4 26 483-508 2-27 (260)
376 3t5d_A Septin-7; GTP-binding p 94.9 0.011 3.9E-07 60.4 2.9 22 487-508 10-31 (274)
377 3k53_A Ferrous iron transport 94.8 0.012 4.2E-07 60.1 3.1 23 487-509 5-27 (271)
378 3t1o_A Gliding protein MGLA; G 94.8 0.013 4.6E-07 55.6 3.2 25 487-511 16-40 (198)
379 1c1y_A RAS-related protein RAP 94.8 0.013 4.6E-07 54.0 3.0 21 487-507 5-25 (167)
380 1z08_A RAS-related protein RAB 94.8 0.014 4.7E-07 54.2 3.1 22 487-508 8-29 (170)
381 1g16_A RAS-related protein SEC 94.8 0.013 4.3E-07 54.3 2.8 22 487-508 5-26 (170)
382 3be4_A Adenylate kinase; malar 94.8 0.013 4.5E-07 57.7 3.0 26 484-509 4-29 (217)
383 1m7b_A RND3/RHOE small GTP-bin 94.8 0.019 6.6E-07 54.4 4.2 22 487-508 9-30 (184)
384 1ky3_A GTP-binding protein YPT 94.8 0.014 4.8E-07 54.7 3.1 22 487-508 10-31 (182)
385 1ek0_A Protein (GTP-binding pr 94.8 0.014 4.8E-07 53.9 3.0 21 487-507 5-25 (170)
386 1wms_A RAB-9, RAB9, RAS-relate 94.7 0.014 4.9E-07 54.5 3.1 21 487-507 9-29 (177)
387 3qf4_B Uncharacterized ABC tra 94.7 7.3 0.00025 44.1 28.5 10 460-469 370-379 (598)
388 2qmh_A HPR kinase/phosphorylas 94.7 0.02 7E-07 55.7 4.1 35 473-508 23-57 (205)
389 3tw8_B RAS-related protein RAB 94.7 0.015 5E-07 54.5 3.1 22 487-508 11-32 (181)
390 1svi_A GTP-binding protein YSX 94.7 0.014 4.7E-07 55.7 2.9 24 485-508 23-46 (195)
391 3pqc_A Probable GTP-binding pr 94.6 0.015 5E-07 55.3 2.9 24 486-509 24-47 (195)
392 3t5g_A GTP-binding protein RHE 94.6 0.028 9.5E-07 52.8 4.7 29 487-515 8-41 (181)
393 2h92_A Cytidylate kinase; ross 94.6 0.013 4.5E-07 57.4 2.4 25 485-509 3-27 (219)
394 4dsu_A GTPase KRAS, isoform 2B 94.6 0.017 5.8E-07 54.6 3.1 21 487-507 6-26 (189)
395 3kkq_A RAS-related protein M-R 94.5 0.031 1.1E-06 52.6 4.9 21 487-507 20-40 (183)
396 3bc1_A RAS-related protein RAB 94.5 0.017 5.9E-07 54.6 3.0 21 487-507 13-33 (195)
397 2hxs_A RAB-26, RAS-related pro 94.5 0.02 6.8E-07 53.5 3.3 21 487-507 8-28 (178)
398 2cxx_A Probable GTP-binding pr 94.5 0.017 5.7E-07 54.7 2.9 22 487-508 3-24 (190)
399 1e4v_A Adenylate kinase; trans 94.5 0.017 5.9E-07 56.6 3.0 23 487-509 2-24 (214)
400 1iqp_A RFCS; clamp loader, ext 94.5 0.049 1.7E-06 56.5 6.7 42 613-655 110-151 (327)
401 4bas_A ADP-ribosylation factor 94.5 0.025 8.7E-07 53.9 4.2 29 486-514 18-52 (199)
402 3b1v_A Ferrous iron uptake tra 94.5 0.019 6.4E-07 58.9 3.3 24 486-509 4-27 (272)
403 1r8s_A ADP-ribosylation factor 94.4 0.018 6.3E-07 53.0 3.0 21 487-507 2-22 (164)
404 2fg5_A RAB-22B, RAS-related pr 94.4 0.025 8.7E-07 54.0 4.1 21 487-507 25-45 (192)
405 3exa_A TRNA delta(2)-isopenten 94.4 0.021 7.3E-07 59.5 3.6 25 485-509 3-27 (322)
406 2gf0_A GTP-binding protein DI- 94.4 0.029 1E-06 53.5 4.4 22 486-507 9-30 (199)
407 2g6b_A RAS-related protein RAB 94.4 0.019 6.6E-07 53.8 3.0 21 487-507 12-32 (180)
408 2fv8_A H6, RHO-related GTP-bin 94.4 0.01 3.4E-07 57.7 1.1 33 476-508 16-48 (207)
409 2y8e_A RAB-protein 6, GH09086P 94.4 0.018 6.1E-07 53.7 2.8 21 487-507 16-36 (179)
410 1ak2_A Adenylate kinase isoenz 94.4 0.023 7.8E-07 56.6 3.7 26 484-509 15-40 (233)
411 2bov_A RAla, RAS-related prote 94.3 0.035 1.2E-06 53.2 4.9 21 487-507 16-36 (206)
412 2xb4_A Adenylate kinase; ATP-b 94.3 0.021 7.2E-07 56.5 3.3 23 487-509 2-24 (223)
413 3d3q_A TRNA delta(2)-isopenten 94.3 0.017 5.8E-07 61.0 2.7 25 486-510 8-32 (340)
414 2efe_B Small GTP-binding prote 94.3 0.021 7.2E-07 53.5 3.1 22 487-508 14-35 (181)
415 1z0f_A RAB14, member RAS oncog 94.3 0.021 7.1E-07 53.3 3.0 22 487-508 17-38 (179)
416 1gwn_A RHO-related GTP-binding 94.3 0.03 1E-06 54.5 4.2 22 487-508 30-51 (205)
417 2xtp_A GTPase IMAP family memb 94.2 0.021 7.1E-07 57.7 3.1 23 486-508 23-45 (260)
418 3con_A GTPase NRAS; structural 94.2 0.021 7.3E-07 54.2 3.0 22 487-508 23-44 (190)
419 1wf3_A GTP-binding protein; GT 94.2 0.022 7.4E-07 59.4 3.3 22 487-508 9-30 (301)
420 2a9k_A RAS-related protein RAL 94.2 0.022 7.5E-07 53.6 3.0 21 487-507 20-40 (187)
421 3auy_A DNA double-strand break 94.2 0.026 8.9E-07 60.5 3.9 30 476-506 17-46 (371)
422 3v9p_A DTMP kinase, thymidylat 94.2 0.021 7.3E-07 56.9 2.9 29 482-510 22-50 (227)
423 4b4t_L 26S protease subunit RP 94.1 0.074 2.5E-06 58.2 7.4 29 481-509 211-239 (437)
424 4dhe_A Probable GTP-binding pr 94.1 0.015 5.1E-07 56.9 1.7 25 485-509 29-53 (223)
425 1zd9_A ADP-ribosylation factor 94.1 0.032 1.1E-06 53.1 4.0 21 487-507 24-44 (188)
426 1a5t_A Delta prime, HOLB; zinc 94.1 0.048 1.6E-06 57.5 5.7 42 613-655 108-149 (334)
427 1vg8_A RAS-related protein RAB 94.1 0.024 8.2E-07 54.6 3.1 22 487-508 10-31 (207)
428 2gf9_A RAS-related protein RAB 94.1 0.024 8.1E-07 53.9 3.0 22 487-508 24-45 (189)
429 2bme_A RAB4A, RAS-related prot 94.1 0.022 7.7E-07 53.7 2.8 21 487-507 12-32 (186)
430 4edh_A DTMP kinase, thymidylat 94.1 0.027 9.2E-07 55.6 3.4 29 483-511 4-32 (213)
431 1moz_A ARL1, ADP-ribosylation 94.1 0.017 5.7E-07 54.4 1.8 24 484-507 17-40 (183)
432 3reg_A RHO-like small GTPase; 94.0 0.038 1.3E-06 52.7 4.4 22 487-508 25-46 (194)
433 3tmk_A Thymidylate kinase; pho 94.0 0.024 8.2E-07 56.1 3.0 29 483-511 3-31 (216)
434 1p5z_B DCK, deoxycytidine kina 94.0 0.019 6.5E-07 58.3 2.3 29 482-510 21-49 (263)
435 1z06_A RAS-related protein RAB 94.0 0.026 8.9E-07 53.6 3.1 21 487-507 22-42 (189)
436 1zbd_A Rabphilin-3A; G protein 94.0 0.028 9.5E-07 54.0 3.3 22 487-508 10-31 (203)
437 1jbk_A CLPB protein; beta barr 93.9 0.029 1E-06 52.7 3.3 27 483-509 41-67 (195)
438 2cjw_A GTP-binding protein GEM 93.9 0.026 9E-07 54.2 3.0 21 487-507 8-28 (192)
439 1nrj_B SR-beta, signal recogni 93.9 0.026 8.9E-07 55.0 3.0 24 486-509 13-36 (218)
440 3llu_A RAS-related GTP-binding 93.9 0.027 9.4E-07 54.0 3.1 25 487-511 22-46 (196)
441 1sky_E F1-ATPase, F1-ATP synth 93.9 0.013 4.3E-07 64.6 0.8 42 474-516 141-182 (473)
442 3lv8_A DTMP kinase, thymidylat 93.9 0.029 1E-06 56.2 3.4 27 484-510 26-52 (236)
443 3iev_A GTP-binding protein ERA 93.9 0.027 9.3E-07 58.8 3.3 22 487-508 12-33 (308)
444 2il1_A RAB12; G-protein, GDP, 93.9 0.027 9.2E-07 53.9 3.0 21 487-507 28-48 (192)
445 2qu8_A Putative nucleolar GTP- 93.9 0.028 9.4E-07 55.5 3.2 23 486-508 30-52 (228)
446 1mh1_A RAC1; GTP-binding, GTPa 93.9 0.028 9.5E-07 52.9 3.0 21 487-507 7-27 (186)
447 3oes_A GTPase rhebl1; small GT 93.9 0.026 8.8E-07 54.4 2.8 23 486-508 25-47 (201)
448 3ld9_A DTMP kinase, thymidylat 93.9 0.031 1.1E-06 55.5 3.4 28 483-510 19-46 (223)
449 3tkl_A RAS-related protein RAB 93.8 0.036 1.2E-06 52.7 3.8 22 487-508 18-39 (196)
450 3bwd_D RAC-like GTP-binding pr 93.8 0.033 1.1E-06 52.2 3.4 24 484-507 7-30 (182)
451 4b4t_K 26S protease regulatory 93.8 0.21 7.3E-06 54.4 10.2 29 481-509 202-230 (428)
452 4tmk_A Protein (thymidylate ki 93.8 0.033 1.1E-06 55.0 3.5 27 484-510 2-28 (213)
453 3dz8_A RAS-related protein RAB 93.8 0.027 9.3E-07 53.7 2.8 22 487-508 25-46 (191)
454 3umf_A Adenylate kinase; rossm 93.8 0.027 9.1E-07 55.8 2.7 74 481-571 25-99 (217)
455 2a5j_A RAS-related protein RAB 93.8 0.03 1E-06 53.4 3.0 22 487-508 23-44 (191)
456 3l0o_A Transcription terminati 93.8 0.014 4.8E-07 62.4 0.7 50 459-508 138-198 (427)
457 2ocp_A DGK, deoxyguanosine kin 93.7 0.031 1.1E-06 55.9 3.2 27 484-510 1-27 (241)
458 2o52_A RAS-related protein RAB 93.7 0.031 1.1E-06 53.9 3.1 21 487-507 27-47 (200)
459 1ltq_A Polynucleotide kinase; 93.7 0.03 1E-06 57.8 3.1 31 486-519 3-33 (301)
460 3i8s_A Ferrous iron transport 93.7 0.03 1E-06 57.3 3.1 23 487-509 5-27 (274)
461 3tqf_A HPR(Ser) kinase; transf 93.7 0.042 1.4E-06 52.2 3.8 34 473-507 5-38 (181)
462 1zj6_A ADP-ribosylation factor 93.7 0.032 1.1E-06 52.9 3.1 24 484-507 15-38 (187)
463 3crm_A TRNA delta(2)-isopenten 93.7 0.03 1E-06 58.7 3.1 25 486-510 6-30 (323)
464 3cnl_A YLQF, putative uncharac 93.6 0.035 1.2E-06 56.5 3.5 30 486-515 100-129 (262)
465 2h57_A ADP-ribosylation factor 93.6 0.027 9.1E-07 53.6 2.4 23 486-508 22-44 (190)
466 2h17_A ADP-ribosylation factor 93.6 0.029 9.9E-07 53.0 2.6 21 487-507 23-43 (181)
467 2atv_A RERG, RAS-like estrogen 93.6 0.033 1.1E-06 53.3 3.1 23 486-508 29-51 (196)
468 2wsm_A Hydrogenase expression/ 93.6 0.03 1E-06 54.7 2.8 23 486-508 31-53 (221)
469 1x3s_A RAS-related protein RAB 93.6 0.033 1.1E-06 52.9 3.0 22 487-508 17-38 (195)
470 3cph_A RAS-related protein SEC 93.6 0.033 1.1E-06 53.9 3.0 22 486-507 21-42 (213)
471 1qvr_A CLPB protein; coiled co 93.6 0.069 2.4E-06 63.7 6.4 35 486-520 589-624 (854)
472 1h65_A Chloroplast outer envel 93.6 0.032 1.1E-06 56.9 3.1 23 487-509 41-63 (270)
473 3def_A T7I23.11 protein; chlor 93.6 0.033 1.1E-06 56.6 3.1 22 487-508 38-59 (262)
474 2p5s_A RAS and EF-hand domain 93.6 0.034 1.2E-06 53.5 3.0 24 485-508 28-51 (199)
475 3a1s_A Iron(II) transport prot 93.6 0.036 1.2E-06 56.3 3.3 23 487-509 7-29 (258)
476 3foz_A TRNA delta(2)-isopenten 93.5 0.037 1.3E-06 57.6 3.5 25 485-509 10-34 (316)
477 2iwr_A Centaurin gamma 1; ANK 93.5 0.028 9.7E-07 52.6 2.4 22 486-507 8-29 (178)
478 2j1l_A RHO-related GTP-binding 93.5 0.035 1.2E-06 54.2 3.1 21 487-507 36-56 (214)
479 2f7s_A C25KG, RAS-related prot 93.5 0.038 1.3E-06 53.7 3.4 22 487-508 27-48 (217)
480 2q3h_A RAS homolog gene family 93.5 0.039 1.3E-06 52.9 3.3 23 485-507 20-42 (201)
481 2chq_A Replication factor C sm 93.5 0.029 1E-06 57.9 2.6 23 487-509 40-62 (319)
482 1jwy_B Dynamin A GTPase domain 93.4 0.035 1.2E-06 57.7 3.1 23 487-509 26-48 (315)
483 3c5c_A RAS-like protein 12; GD 93.4 0.038 1.3E-06 52.6 3.1 21 487-507 23-43 (187)
484 2fu5_C RAS-related protein RAB 93.3 0.027 9.1E-07 53.1 1.8 21 487-507 10-30 (183)
485 2gco_A H9, RHO-related GTP-bin 93.3 0.036 1.2E-06 53.4 2.8 21 487-507 27-47 (201)
486 2fh5_B SR-beta, signal recogni 93.3 0.051 1.7E-06 52.7 3.9 23 486-508 8-30 (214)
487 2xxa_A Signal recognition part 93.3 0.26 8.9E-06 53.9 9.9 27 484-510 99-125 (433)
488 3r7w_A Gtpase1, GTP-binding pr 93.3 0.042 1.4E-06 57.3 3.3 27 483-509 1-27 (307)
489 2p65_A Hypothetical protein PF 93.2 0.037 1.2E-06 52.0 2.6 28 483-510 41-68 (187)
490 2aka_B Dynamin-1; fusion prote 93.2 0.037 1.3E-06 56.9 2.9 23 487-509 28-50 (299)
491 2b6h_A ADP-ribosylation factor 93.2 0.038 1.3E-06 52.9 2.8 33 473-507 19-51 (192)
492 3q3j_B RHO-related GTP-binding 93.2 0.055 1.9E-06 52.8 3.9 23 486-508 28-50 (214)
493 2g3y_A GTP-binding protein GEM 93.2 0.054 1.8E-06 53.2 3.8 23 487-509 39-61 (211)
494 4djt_A GTP-binding nuclear pro 93.2 0.025 8.7E-07 55.1 1.4 21 487-507 13-33 (218)
495 4b4t_J 26S protease regulatory 93.1 0.1 3.5E-06 56.3 6.1 29 481-509 178-206 (405)
496 3eph_A TRNA isopentenyltransfe 93.1 0.044 1.5E-06 59.2 3.2 26 485-510 2-27 (409)
497 2atx_A Small GTP binding prote 93.0 0.043 1.5E-06 52.3 2.8 22 487-508 20-41 (194)
498 3euj_A Chromosome partition pr 93.0 0.16 5.6E-06 56.1 7.8 77 587-667 371-464 (483)
499 4gzl_A RAS-related C3 botulinu 93.0 0.039 1.3E-06 53.4 2.5 23 485-507 30-52 (204)
500 2hf9_A Probable hydrogenase ni 92.9 0.045 1.5E-06 53.6 2.8 23 486-508 39-61 (226)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3e-103 Score=976.20 Aligned_cols=504 Identities=28% Similarity=0.390 Sum_probs=456.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 192 ASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVS 271 (709)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 271 (709)
..++.+++.+++.++++++..++|.++|+|++++|++||+++++|++.+|+++|.+.++..+...+..++..++.++. +
T Consensus 149 ~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~-~ 227 (1321)
T 4f4c_A 149 MWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFIT-G 227 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 346778899999999999999999999999999999999999999999999999999887766555555655544433 3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHH
Q 005205 272 GILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRR 351 (709)
Q Consensus 272 ~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~ 351 (709)
.++++.++|.+++++++++++++++...+.+..++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++
T Consensus 228 ~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 307 (1321)
T 4f4c_A 228 FIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEE 307 (1321)
T ss_dssp HHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHH
Confidence 34556678888888888878777777777777777777778888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 352 YEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMK 431 (709)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~ 431 (709)
+.+...+.....+.......++..+..++++++|++++.+|.+|+|++++++.++..+..|+..++..+..++++.++++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ 387 (1321)
T 4f4c_A 308 AKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAAS 387 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888777777666666666667777788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccCCCCC-CCCCCCCceEEEEeEEEEecC--CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC
Q 005205 432 SMFQLLEEKADIQDRDNA-MPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 432 rl~~~l~~~~~~~~~~~~-~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl 508 (709)
|++++++.+++.++.... .+.....|+|+|+||+|+||+ ++|+|+|+||+|+|||++|||||||||||||++||+|+
T Consensus 388 ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 388 GIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp HHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred HHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccc
Confidence 999999987765443222 122223578999999999983 57999999999999999999999999999999999999
Q ss_pred CCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCcccc
Q 005205 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTV 588 (709)
Q Consensus 509 y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~ 588 (709)
|+|++|+|++||+|+++++.++||++||||||||+||+|||||||+||+|++++|++++||+.|++||||++||+||||+
T Consensus 468 ~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~ 547 (1321)
T 4f4c_A 468 YDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTL 547 (1321)
T ss_dssp SCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSE
T ss_pred cccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeC
Q 005205 589 VGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLEN 668 (709)
Q Consensus 589 vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~ 668 (709)
|||+|.+||||||||||||||+++||+||||||||||||++||+.|+++|+++.++||+|+||||++|+++||+|+|||+
T Consensus 548 vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~ 627 (1321)
T 4f4c_A 548 VGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKN 627 (1321)
T ss_dssp ESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEET
T ss_pred ecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecChHHHhhcccHHHHHHHhhhc
Q 005205 669 GKVIEQGSHDDLLTKAGRYAQLWGQQNN 696 (709)
Q Consensus 669 G~Ive~Gth~eLl~~~g~Y~~l~~~q~~ 696 (709)
|+|+|+|||+||++++|.|+++|..|..
T Consensus 628 G~ive~Gth~eL~~~~g~y~~l~~~q~~ 655 (1321)
T 4f4c_A 628 GQVVEVGDHRALMAQQGLYYDLVTAQTF 655 (1321)
T ss_dssp TEEEEEECHHHHHTTTCHHHHHHHHHHH
T ss_pred CeeeccCCHHHHHHhhhHHHHHHHhhhc
Confidence 9999999999999999999999998843
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.2e-101 Score=956.10 Aligned_cols=505 Identities=30% Similarity=0.370 Sum_probs=413.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--cChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 193 SAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLS--RETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMV 270 (709)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~--~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 270 (709)
.++.+++.+++.+.+.++..++|.++|+|++++|++||+. +++|++.+|+++|.+.++..+...+..++..++.++..
T Consensus 808 ~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ 887 (1321)
T 4f4c_A 808 GICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAG 887 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4567788899999999999999999999999999999986 67999999999999988877666555565555444332
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHH
Q 005205 271 SGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLR 350 (709)
Q Consensus 271 ~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~ 350 (709)
.++++.++|.++++++++++++++......+...+...+..+..++....+.|.++|+++||+|++|+.+.++|.+..+
T Consensus 888 -~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~ 966 (1321)
T 4f4c_A 888 -IGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLD 966 (1321)
T ss_dssp -HHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHH
T ss_pred -eeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHH
Confidence 2344456777777665555554433333222211222223344556677889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 351 RYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLV--MVNGLLFQLSLPLNFLGSVYRETVQSLV 428 (709)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~--a~~~~~~~l~~pl~~l~~~~~~l~~~~~ 428 (709)
...+...+.....+........+..+..+.++++|++++..|..+++.+. +++.++.....|+..+...+.+++++..
T Consensus 967 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1046 (1321)
T 4f4c_A 967 IPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATF 1046 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777766665555444444445556667788888888877766544 3344444455688888889999999999
Q ss_pred HHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecC--CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHh
Q 005205 429 DMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (709)
Q Consensus 429 s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~ 506 (709)
+++|++++++.+++.++...+.+.++..|+|+|+||+|+||+ +.|||+||||+|+|||+||||||||||||||+++|+
T Consensus 1047 a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1047 AGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp HHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHT
T ss_pred HHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 999999999988765544333333445679999999999984 458999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCC--CCCCHHHHHHHHHHHchHHHHHhCCCC
Q 005205 507 RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR--LSATEEEVYDAARRAAIHDTIMNFPAK 584 (709)
Q Consensus 507 rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~--~~~s~~ei~~A~~~a~l~~~I~~Lp~G 584 (709)
|||+|++|+|+|||+|++++++++||++|++|||||+||+|||||||+||. ++++|+|+++||+.|++||||++||+|
T Consensus 1127 rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~G 1206 (1321)
T 4f4c_A 1127 RFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEG 1206 (1321)
T ss_dssp TSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTT
T ss_pred cCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCC
Confidence 999999999999999999999999999999999999999999999999994 578999999999999999999999999
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEE
Q 005205 585 YSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEII 664 (709)
Q Consensus 585 ~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Ii 664 (709)
|||+|||+|.+|||||||||||||||+|||+||||||||||||++||+.|+++|++..++||+|+|||||+|+++||+|+
T Consensus 1207 ldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~ 1286 (1321)
T 4f4c_A 1207 FETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIA 1286 (1321)
T ss_dssp TCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEE
T ss_pred CCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEecChHHHhhcccHHHHHHHhhhcch
Q 005205 665 VLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTA 698 (709)
Q Consensus 665 vl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~~ 698 (709)
|||+|+|||+|||+||++++|.|++||+.|..+.
T Consensus 1287 Vld~G~IvE~Gth~eLl~~~g~y~~L~~~Q~~e~ 1320 (1321)
T 4f4c_A 1287 VVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMTEK 1320 (1321)
T ss_dssp EESSSSEEEEECHHHHHHCC--------------
T ss_pred EEECCEEEEECCHHHHHhCCcHHHHHHHHHHhcc
Confidence 9999999999999999999999999999997653
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-97 Score=858.03 Aligned_cols=569 Identities=26% Similarity=0.408 Sum_probs=483.8
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 005205 109 RTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIA 188 (709)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 188 (709)
+++++|++ ++++.+++++++.++..++.++.|++++.++|.+..... .. .+... ..++++..
T Consensus 12 ~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-~~------~~~~~----~~~~~~~~-- 73 (587)
T 3qf4_A 12 KTLARYLK-----PYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD-FS------LVLKT----GILMLIVA-- 73 (587)
T ss_dssp CCGGGGTG-----GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-HH------HHHHH----HHHHHHHH--
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-HH------HHHHH----HHHHHHHH--
Confidence 34555655 567777788888888889999999999999997643211 10 11111 01111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 189 RTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEIS 268 (709)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 268 (709)
++..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++.+|+++|.+.++.++...+..++..++.++
T Consensus 74 -~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i 152 (587)
T 3qf4_A 74 -LIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFV 152 (587)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223556778888889999999999999999999999999999999999999999999988877665555554443332
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHH
Q 005205 269 MVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEF 348 (709)
Q Consensus 269 ~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~ 348 (709)
. ..++++.++|.+++++++++++++++...+.+...+..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+.
T Consensus 153 ~-~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~ 231 (587)
T 3qf4_A 153 G-GIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKA 231 (587)
T ss_dssp H-HHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Confidence 2 233445567888887777777666666666666666677777788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 349 LRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLV 428 (709)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~ 428 (709)
.+++.+...+..+..+.......++.....++++++|++++.+|.+|+|+++++..|+..+..|+..++..+..++++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 311 (587)
T 3qf4_A 232 NESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASA 311 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887776666666655555566677778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhc
Q 005205 429 DMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 429 s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++|+.++++.+++..+.....+.+...+.|+|+||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|
T Consensus 312 s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 312 SAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp HHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTT
T ss_pred HHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 999999999887654332222222233468999999999974 5689999999999999999999999999999999999
Q ss_pred CCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccc
Q 005205 508 SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST 587 (709)
Q Consensus 508 ly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT 587 (709)
+|+|++|+|++||+|+++++.+++|++|+||||||++|++||+|||.+|++++++++++++++.++++++++++|+||||
T Consensus 392 ~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~ 471 (587)
T 3qf4_A 392 LIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDS 471 (587)
T ss_dssp SSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred CccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEe
Q 005205 588 VVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLE 667 (709)
Q Consensus 588 ~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~ 667 (709)
.+||+|.+||||||||++|||||++||+|||||||||+||+++|+.|++.|+++.+++|+|+||||+++++.||+|+||+
T Consensus 472 ~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~ 551 (587)
T 3qf4_A 472 RVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLH 551 (587)
T ss_dssp EECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEE
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred CCEEEEecChHHHhhcccHHHHHHHhhhcc
Q 005205 668 NGKVIEQGSHDDLLTKAGRYAQLWGQQNNT 697 (709)
Q Consensus 668 ~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 697 (709)
+|+|+|+|+|+||+++++.|+++|..|..+
T Consensus 552 ~G~i~~~g~~~el~~~~~~~~~~~~~~~~~ 581 (587)
T 3qf4_A 552 EGKVAGFGTHKELLEHCKPYREIYESQFGN 581 (587)
T ss_dssp TTEEEEEECHHHHHHHCHHHHHHHHHHC--
T ss_pred CCEEEEECCHHHHHhCCcHHHHHHHHHhcc
Confidence 999999999999999999999999988644
No 4
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3e-97 Score=854.86 Aligned_cols=575 Identities=31% Similarity=0.463 Sum_probs=488.4
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 005205 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (709)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (709)
++++++|++ ++++.+++++++.++..++.+..|++++.++|.+........ . ..+.......+..++++
T Consensus 2 ~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~-- 70 (578)
T 4a82_A 2 IKRYLQFVK-----PYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTT-D---EKVHHLTIAIGIALFIF-- 70 (578)
T ss_dssp HHHHHHHHG-----GGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCH-H---HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh-h---HHHHHHHHHHHHHHHHH--
Confidence 466777776 567777888888888888999999999999998764221000 0 00100001111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005205 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (709)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (709)
.++..++.+++.++..+++.++..++|.++|+|++++|++||+++++|++.+++++|.+.++.++...+..++..++.+
T Consensus 71 -~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~ 149 (578)
T 4a82_A 71 -VIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITI 149 (578)
T ss_dssp -HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233467788899999999999999999999999999999999999999999999999888777655444444444433
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHH
Q 005205 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (709)
Q Consensus 268 ~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~ 347 (709)
++ ..++++.++|.++++.++++++++++...+.+...+..++..+..++..+.+.|.++|+++||+|++|+.+.++|++
T Consensus 150 i~-~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 228 (578)
T 4a82_A 150 II-ALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDK 228 (578)
T ss_dssp HH-HHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHH
Confidence 32 23344556788888777776766666666666666666777777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSL 427 (709)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~ 427 (709)
..+++.+...+..++.+.......++..+..++++++|++++.+|.+|+|+++++..++..+..|+..++..+..++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 308 (578)
T 4a82_A 229 KNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSF 308 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888777777666666666667777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHh
Q 005205 428 VDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (709)
Q Consensus 428 ~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~ 506 (709)
.+++|+.++++.+++..+.....+.+...+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+
T Consensus 309 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 309 ASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp HHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred HHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 9999999999987654432222222233568999999999985 568999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCcc
Q 005205 507 RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYS 586 (709)
Q Consensus 507 rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~d 586 (709)
|+|+|++|+|++||+|+++++.+++|++||||||||++|++||+|||.+|+|+.++++++++++.++++++++++|+|||
T Consensus 389 g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~ 468 (578)
T 4a82_A 389 RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYD 468 (578)
T ss_dssp TSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGG
T ss_pred cCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEE
Q 005205 587 TVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVL 666 (709)
Q Consensus 587 T~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl 666 (709)
|.+||+|.+||||||||++||||+++||+|||||||||+||+++|+.|++.|+++.+++|+|+||||+++++.||+|+||
T Consensus 469 t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l 548 (578)
T 4a82_A 469 TEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVI 548 (578)
T ss_dssp CBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEE
T ss_pred hhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred eCCEEEEecChHHHhhcccHHHHHHHhhh
Q 005205 667 ENGKVIEQGSHDDLLTKAGRYAQLWGQQN 695 (709)
Q Consensus 667 ~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 695 (709)
++|+|+|+|+|+||++++|.|+++|+.|.
T Consensus 549 ~~G~i~~~g~~~el~~~~~~~~~~~~~q~ 577 (578)
T 4a82_A 549 ENGHIVETGTHRELIAKQGAYEHLYSIQN 577 (578)
T ss_dssp ETTEEEEEECHHHHHHTTSHHHHHHTTTT
T ss_pred ECCEEEEECCHHHHHhCCcHHHHHHHhhc
Confidence 99999999999999999999999998773
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3e-97 Score=857.70 Aligned_cols=572 Identities=28% Similarity=0.429 Sum_probs=489.8
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 005205 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (709)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (709)
++.++++++|++ ++++.+++++++.++..++.+..|++++.++|.+..... .. .+.... .++++
T Consensus 22 ~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-~~------~~~~~~----~~~~~ 85 (598)
T 3qf4_B 22 TATLRRLLGYLR-----PHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR-FD------LLPRYM----LILGT 85 (598)
T ss_dssp HHHHHHHGGGTG-----GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-GG------GHHHHH----HHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-HH------HHHHHH----HHHHH
Confidence 455677777776 457777888888888889999999999999998753211 10 111111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005205 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (709)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (709)
..++..++.+++.++..+++.++..++|.++|+|++++|++||+++++|++.+++++|.+.++.++...+..++..+
T Consensus 86 ---~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~ 162 (598)
T 3qf4_B 86 ---IYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGI 162 (598)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233456778889999999999999999999999999999999999999999999999998887766555555555
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHH
Q 005205 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (709)
Q Consensus 265 ~~~~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~ 344 (709)
+.+++. .++++.++|.+++++++++++++++...+.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++
T Consensus 163 ~~~i~~-~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~ 241 (598)
T 3qf4_B 163 VTLAGA-VIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEK 241 (598)
T ss_dssp HHHHHH-HHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHH
Confidence 444333 3344556787877777666666666666666666666777777788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (709)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~ 424 (709)
|++..+++.+...+.....+.......++..+..++++++|++++.+|.+|+|+++++..++..+..|+..++..+..++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~ 321 (598)
T 3qf4_B 242 FDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQ 321 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888777666666666655556666777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHH
Q 005205 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRL 504 (709)
Q Consensus 425 ~~~~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~L 504 (709)
++..+++|+.++++.+++..+.. ..+.+...+.|+++||+|+|++++++|+|+||+|++||++|||||||||||||+++
T Consensus 322 ~~~~s~~ri~~~l~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~ 400 (598)
T 3qf4_B 322 MALASAERIFEILDLEEEKDDPD-AVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNL 400 (598)
T ss_dssp HHHHHHHHHHHHTTSCCCCCCSS-CCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCC-CCCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHH
Confidence 99999999999998876543221 11222334689999999999877789999999999999999999999999999999
Q ss_pred HhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCC
Q 005205 505 LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK 584 (709)
Q Consensus 505 L~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G 584 (709)
|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|++||+|||.+|+++.++++++++++.++++++++++|+|
T Consensus 401 l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 480 (598)
T 3qf4_B 401 LMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEG 480 (598)
T ss_dssp HTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTG
T ss_pred HhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEE
Q 005205 585 YSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEII 664 (709)
Q Consensus 585 ~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Ii 664 (709)
|||.+||+|.+|||||||||+|||||++||+|||||||||+||+++|+.|++.|+++.+++|+|+||||+++++.||+|+
T Consensus 481 ~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~ 560 (598)
T 3qf4_B 481 YETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLII 560 (598)
T ss_dssp GGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEE
T ss_pred ccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred EEeCCEEEEecChHHHhhcccHHHHHHHhhhcc
Q 005205 665 VLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNT 697 (709)
Q Consensus 665 vl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 697 (709)
||++|+|+|+|+|+||++++|.|+++|..|...
T Consensus 561 ~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 593 (598)
T 3qf4_B 561 VLRDGEIVEMGKHDELIQKRGFYYELFTSQYGL 593 (598)
T ss_dssp EECSSSEEECSCHHHHHHTTCHHHHHHHHHHGG
T ss_pred EEECCEEEEECCHHHHHhCCCHHHHHHHHHhhh
Confidence 999999999999999999999999999988543
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2e-94 Score=832.50 Aligned_cols=569 Identities=30% Similarity=0.420 Sum_probs=484.7
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 005205 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (709)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (709)
++.+++++++++ ++++.+++++++.++..++.++.|++++.++|.+.... .. .....+ +..+++
T Consensus 10 ~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~------~~~~~~----~~~~~~ 73 (582)
T 3b5x_A 10 WQTFKRLWTYIR-----LYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNA-ES------NFLRIL----PFMILG 73 (582)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ch------HHHHHH----HHHHHH
Confidence 455677777775 45666677777777788899999999999999875311 10 001000 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005205 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (709)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (709)
. .++..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++.++...+..++..+
T Consensus 74 ~---~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T 3b5x_A 74 L---MFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREG 150 (582)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1233456778888999999999999999999999999999999999999999999999988887666566666655
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHH
Q 005205 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (709)
Q Consensus 265 ~~~~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~ 344 (709)
+.+++.+ ++++.++|.+++++++++++++++...+.+...+..++.++..++..+.+.|.++|+++||+|+.|+.+.++
T Consensus 151 ~~~i~~~-~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~ 229 (582)
T 3b5x_A 151 ASIIGLL-TLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKR 229 (582)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHH
Confidence 5443333 334456788877777666666655555566666666667777788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (709)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~ 424 (709)
|++..+++.+...+..+..........++..+..++++++|++++.+|.+|+|+++++..++..+..|+..++..+..++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~ 309 (582)
T 3b5x_A 230 FDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQ 309 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888777777666666666666777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecCC-cccceeeeeEeeCCcEEEEEcCCCccHHHHHH
Q 005205 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (709)
Q Consensus 425 ~~~~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~ 503 (709)
++..+++|+.++++.+++.++. ..+.+...+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~ 387 (582)
T 3b5x_A 310 RGMAACQTLFGLMDLETERDNG--KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHHHHHHHHHHHcCCCcCCCC--CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHH
Confidence 9999999999999876653221 11112224579999999999753 78999999999999999999999999999999
Q ss_pred HHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCC-CCCCHHHHHHHHHHHchHHHHHhCC
Q 005205 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR-LSATEEEVYDAARRAAIHDTIMNFP 582 (709)
Q Consensus 504 LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~-~~~s~~ei~~A~~~a~l~~~I~~Lp 582 (709)
+|+|+|+|++|+|++||+|+++++.+++|++||||||+|++|++||+|||.+|. ++.++++++++++.++++++++++|
T Consensus 388 ~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p 467 (582)
T 3b5x_A 388 LFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMP 467 (582)
T ss_pred HHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999998 7788999999999999999999999
Q ss_pred CCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCe
Q 005205 583 AKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDE 662 (709)
Q Consensus 583 ~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~ 662 (709)
+||||.+||+|.+||||||||++|||||++||+|||||||||+||+++|+.|++.|+++.+++|+|+||||+++++.||+
T Consensus 468 ~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~ 547 (582)
T 3b5x_A 468 QGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADE 547 (582)
T ss_pred ccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred EEEEeCCEEEEecChHHHhhcccHHHHHHHhhh
Q 005205 663 IIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 695 (709)
Q Consensus 663 Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 695 (709)
|+||++|+|+|.|+|+||++.++.|+++|+.|.
T Consensus 548 i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLLAQDGAYAQLHRIQF 580 (582)
T ss_pred EEEEECCEEEEECCHHHHHhCCcHHHHHHHHhh
Confidence 999999999999999999999999999999884
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.8e-94 Score=832.82 Aligned_cols=569 Identities=30% Similarity=0.418 Sum_probs=484.6
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 005205 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (709)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (709)
++.+++++++++ ++++.+++++++.++..++.+..|++++.++|.+.... . .... .+. +..+++
T Consensus 10 ~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~-------~~~~--~~~-~~~~~~ 73 (582)
T 3b60_A 10 WQTFRRLWPTIA-----PFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT-D-------RSVL--LWM-PLVVIG 73 (582)
T ss_dssp CHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST-T-------HHHH--HHS-HHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-c-------hHHH--HHH-HHHHHH
Confidence 345677777776 44666677777777788889999999999999754211 1 0000 000 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 005205 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (709)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (709)
. .++..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++.++...+..++..+
T Consensus 74 ~---~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T 3b60_A 74 L---MILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1233456778888999999999999999999999999999999999999999999999988887666666666655
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHH
Q 005205 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (709)
Q Consensus 265 ~~~~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~ 344 (709)
+.+++.+ ++++.++|.+++++++++++++++...+.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++
T Consensus 151 ~~~i~~~-~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~ 229 (582)
T 3b60_A 151 ASIIGLF-IMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKR 229 (582)
T ss_dssp HHHHHHH-HHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHH
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHH
Confidence 5443333 334556888888777776666666655666666666777777788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (709)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~ 424 (709)
|++..+++.+...+..+..........++..+..++++++|++++.+|.+|+|+++++..++..+..|+..++..+..++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~ 309 (582)
T 3b60_A 230 FDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 309 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888777777666666666666677788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecCC-cccceeeeeEeeCCcEEEEEcCCCccHHHHHH
Q 005205 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (709)
Q Consensus 425 ~~~~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~ 503 (709)
++..+++|+.++++.+++..+. ..+.+...+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~ 387 (582)
T 3b60_A 310 RGMAACQTLFAILDSEQEKDEG--KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 387 (582)
T ss_dssp HHHHHHHHHHHHHHSCCSCCCC--CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccCC--CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 9999999999999876653221 11112224579999999999753 78999999999999999999999999999999
Q ss_pred HHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCC-CCCCHHHHHHHHHHHchHHHHHhCC
Q 005205 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR-LSATEEEVYDAARRAAIHDTIMNFP 582 (709)
Q Consensus 504 LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~-~~~s~~ei~~A~~~a~l~~~I~~Lp 582 (709)
+|+|+|+|++|+|++||+|+++++.+++|++|+||||+|.+|++||+|||.+|. ++.++++++++++.++++++++++|
T Consensus 388 ~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p 467 (582)
T 3b60_A 388 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMD 467 (582)
T ss_dssp HHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHST
T ss_pred HHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999997 7788999999999999999999999
Q ss_pred CCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCe
Q 005205 583 AKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDE 662 (709)
Q Consensus 583 ~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~ 662 (709)
+||||.+||+|.+||||||||++||||+++||+|||||||||+||+++|+.|++.|+++.+++|+|+||||+++++.||+
T Consensus 468 ~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~ 547 (582)
T 3b60_A 468 NGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADE 547 (582)
T ss_dssp TGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSE
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred EEEEeCCEEEEecChHHHhhcccHHHHHHHhhh
Q 005205 663 IIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 695 (709)
Q Consensus 663 Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 695 (709)
|+||++|+|+|.|+|+||++.++.|+++|+.|.
T Consensus 548 i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLAQHGVYAQLHKMQF 580 (582)
T ss_dssp EEEEETTEEEEEECHHHHHHHTSSHHHHHHHTC
T ss_pred EEEEECCEEEEecCHHHHHHcCCHHHHHHHHhc
Confidence 999999999999999999999999999999884
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=8.1e-94 Score=829.42 Aligned_cols=575 Identities=29% Similarity=0.402 Sum_probs=466.4
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 005205 106 KIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGY 185 (709)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (709)
+.+++++++++ ++++.+++++++.++..++.++.|++++.++|.+........ ...+..+. ..+++.
T Consensus 5 ~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~----~~~~~~~~----~~~~~~ 71 (595)
T 2yl4_A 5 PEARKLLGLAY-----PERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDY----SDNLTRLC----LGLSAV 71 (595)
T ss_dssp HHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCC----HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh----hHHHHHHH----HHHHHH
Confidence 34566777765 456666777777777788888999999999998753211000 00011110 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 005205 186 GIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (709)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (709)
.++..++.+++.++..+++.++..++|.++|+|++++|++||+++++|++.+++++|.+.++..+...+..++..++
T Consensus 72 ---~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~ 148 (595)
T 2yl4_A 72 ---FLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGA 148 (595)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233567778888899999999999999999999999999999999999999999998888766555555555554
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHH
Q 005205 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY 345 (709)
Q Consensus 266 ~~~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~ 345 (709)
.+++.+ ++++.++|.+++++++.+++++++...+.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|
T Consensus 149 ~~i~~~-~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 227 (595)
T 2yl4_A 149 QASVGI-SMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKY 227 (595)
T ss_dssp HHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHH
T ss_pred HHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHH
Confidence 433332 3345567888777776666666665556666666677777777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (709)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~ 425 (709)
++..+++.+...+..+..........++..+..++++++|++++.+|.+|+|+++++..+...+..|+..++..+..+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~ 307 (595)
T 2yl4_A 228 ASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMK 307 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888777776666655555556666777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCCCce-EEEEeEEEEecC--CcccceeeeeEeeCCcEEEEEcCCCccHHHHH
Q 005205 426 SLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGS-IQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL 502 (709)
Q Consensus 426 ~~~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~-I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~ 502 (709)
+..+++|+.++++.+++.++.....+.+...++ |+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+
T Consensus 308 ~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl 387 (595)
T 2yl4_A 308 GLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVL 387 (595)
T ss_dssp HHHHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHH
T ss_pred HHHHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHH
Confidence 999999999999876654322111111122457 999999999974 35799999999999999999999999999999
Q ss_pred HHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCC---CCHHHHHHHHHHHchHHHHH
Q 005205 503 RLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS---ATEEEVYDAARRAAIHDTIM 579 (709)
Q Consensus 503 ~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~---~s~~ei~~A~~~a~l~~~I~ 579 (709)
++|+|+|+|++|+|++||+|+++++.+++|++|+||||+|.+|++||+|||.+|.+. .++++++++++.++++++++
T Consensus 388 ~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 467 (595)
T 2yl4_A 388 SLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIR 467 (595)
T ss_dssp HHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999875 78999999999999999999
Q ss_pred hCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh
Q 005205 580 NFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ 659 (709)
Q Consensus 580 ~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~ 659 (709)
++|+|+||.+||+|.+||||||||++|||||++||+|||||||||+||+++|+.|++.|+++.+++|+|+||||+++++.
T Consensus 468 ~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~ 547 (595)
T 2yl4_A 468 NFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN 547 (595)
T ss_dssp TSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHH
T ss_pred hCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred cCeEEEEeCCEEEEecChHHHhh-cccHHHHHHHhhhcc
Q 005205 660 CDEIIVLENGKVIEQGSHDDLLT-KAGRYAQLWGQQNNT 697 (709)
Q Consensus 660 aD~Iivl~~G~Ive~Gth~eLl~-~~g~Y~~l~~~q~~~ 697 (709)
||+|+||++|+|+|.|+|+||++ .++.|++++..|...
T Consensus 548 ~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~q~~~ 586 (595)
T 2yl4_A 548 ANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSFI 586 (595)
T ss_dssp SSEEEEEETTEEEEEECSCC------C------------
T ss_pred CCEEEEEECCEEEEECCHHHHHhCCChHHHHHHHHhhcc
Confidence 99999999999999999999998 489999999988543
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.4e-92 Score=878.38 Aligned_cols=581 Identities=27% Similarity=0.366 Sum_probs=484.2
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh------hhhh---hhhHHHHHHHHH
Q 005205 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTA------TALA---ANSTFLALFGTP 178 (709)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~------~~~~---~~~~~~~l~~~~ 178 (709)
++++++|.. +..+..+++++++.++..+...+.|++++.++|.+....... .... .......-+...
T Consensus 35 ~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (1284)
T 3g5u_A 35 VLTMFRYAG----WLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTY 110 (1284)
T ss_dssp THHHHTCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHH
Confidence 455555543 344556666666666677777788889999998764211000 0000 000000000001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHH
Q 005205 179 AAVLIGYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVF 258 (709)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~lf~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~ 258 (709)
..++++ +.++..++.+++.+++.+++.++..++|.++|+|++++|++||+++++|++.+|+++|.+.++..+...+.
T Consensus 111 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~ 187 (1284)
T 3g5u_A 111 AYYYTG---IGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIG 187 (1284)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 12233456778899999999999999999999999999999999999999999999999999888776666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcch
Q 005205 259 NVVPTILEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNE 338 (709)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e 338 (709)
.++..++.++. .+++++.++|.+++++++++++++++...+.+..++..++.++..++.++.+.|.++|+++||+|++|
T Consensus 188 ~~~~~~~~~i~-~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e 266 (1284)
T 3g5u_A 188 MFFQAMATFFG-GFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQ 266 (1284)
T ss_dssp HHHHHHHHHHH-HHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCC
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcch
Confidence 66665544433 23445567888888888777777777666666666777777778888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 339 AFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGS 418 (709)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~ 418 (709)
+.+.++|++..+++.+...+.....+...+...++.....++++++|++++..|.+|+|+++++..++..+..|+..+..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~ 346 (1284)
T 3g5u_A 267 KKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASP 346 (1284)
T ss_dssp CSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888777777666666666666777788899999999999999999888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCC-CCCCCCCCCceEEEEeEEEEecC--CcccceeeeeEeeCCcEEEEEcCCC
Q 005205 419 VYRETVQSLVDMKSMFQLLEEKADIQDRD-NAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSG 495 (709)
Q Consensus 419 ~~~~l~~~~~s~~rl~~~l~~~~~~~~~~-~~~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vaIVG~SG 495 (709)
.+..++++.++++|++++++.+++..+.. ...+.+...|.|+|+||+|+|++ +.++|+|+||+|+|||++|||||||
T Consensus 347 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sG 426 (1284)
T 3g5u_A 347 NIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSG 426 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCC
Confidence 99999999999999999999876543321 11111223578999999999984 3589999999999999999999999
Q ss_pred ccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchH
Q 005205 496 SGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIH 575 (709)
Q Consensus 496 sGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~ 575 (709)
||||||+++|+|+|+|++|+|++||+|+++++++++|++||||||||+||++||+|||.+|+++++++++++|++.++++
T Consensus 427 sGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~ 506 (1284)
T 3g5u_A 427 CGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAY 506 (1284)
T ss_dssp SSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 005205 576 DTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 655 (709)
Q Consensus 576 ~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRls 655 (709)
++|+++|+||||.+||+|.+|||||||||||||||++||+|||||||||+||++||+.|++.|+++.+++|+|+||||++
T Consensus 507 ~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~ 586 (1284)
T 3g5u_A 507 DFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLS 586 (1284)
T ss_dssp HHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHH
T ss_pred HHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHHHHhhhc
Q 005205 656 TAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNN 696 (709)
Q Consensus 656 ti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~ 696 (709)
++++||+|+||++|+|+|+|+|+||++++|.|++++..|..
T Consensus 587 ~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 627 (1284)
T 3g5u_A 587 TVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTA 627 (1284)
T ss_dssp HHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC-
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHhhh
Confidence 99999999999999999999999999999999999988743
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.8e-86 Score=822.00 Aligned_cols=561 Identities=27% Similarity=0.384 Sum_probs=462.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 126 RVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSK 205 (709)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (709)
.+++++++.++..++....|+++..++|.+........ .......+. .++++++ ++..++.+++.+++.+
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~------~~~~~l~---i~~~~~~~~~~~~~~~ 775 (1284)
T 3g5u_A 706 YFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPET-QRQNSNLFS------LLFLILG---IISFITFFLQGFTFGK 775 (1284)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTH-HHHHHHHHH------HHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchh-hHHHHHHHH------HHHHHHH---HHHHHHHHHHHHHHHH
Confidence 34455555555566667778888888886643211110 000111111 1111111 1223456778889999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccccc--ccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 005205 206 VALRTIRSVSRKVFSHLHELDLRYHL--SRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (709)
Q Consensus 206 ~~~~~~~~lr~~lf~~ll~l~~~~f~--~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 283 (709)
.+.++..++|.++|+|++++|++||+ ++++|++.+|+++|.+.++..+...+..++..++.++. .+++++.++|.++
T Consensus 776 ~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~-~~i~~~~~~~~l~ 854 (1284)
T 3g5u_A 776 AGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGT-GIIISLIYGWQLT 854 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSCSSSH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHH
Confidence 99999999999999999999999999 47899999999999999988877666666655544332 3344556678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005205 284 WITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSL 363 (709)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~IKa~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (709)
+++++++++++++.....+...+...+..+..+.....+.|.+.|+++||+|++|+.+.++|.+..+...+...+...+.
T Consensus 855 lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1284)
T 3g5u_A 855 LLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVF 934 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777766666555555554444445555566667788999999999999999999999999999988888887777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 005205 364 AFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADI 443 (709)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~g~~~v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~~~ 443 (709)
+........+..+..++++++|++++..|.+++|.++++..++.....|+..+...+..++++..+++|+.++++.+++.
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 1014 (1284)
T 3g5u_A 935 GITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEI 1014 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 66666665566666777788899999999999999999999888888999998888888999999999999999887654
Q ss_pred cCCCC-CCCCCCCCceEEEEeEEEEecC--CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 005205 444 QDRDN-AMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (709)
Q Consensus 444 ~~~~~-~~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG 520 (709)
.+... ..+.+...+.|+|+||+|+|++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 1015 ~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g 1094 (1284)
T 3g5u_A 1015 DSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDG 1094 (1284)
T ss_dssp SSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSS
T ss_pred cccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC
Confidence 33211 1112223578999999999974 34799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCCh
Q 005205 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSG 598 (709)
Q Consensus 521 ~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSG 598 (709)
+|+++++.+++|++|+||||||.+|++||+|||.+|++ ..++++++++++.++++++++++|+||||.|||+|.+|||
T Consensus 1095 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSg 1174 (1284)
T 3g5u_A 1095 KEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSG 1174 (1284)
T ss_dssp SCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCH
T ss_pred EEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCH
Confidence 99999999999999999999999999999999999975 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChH
Q 005205 599 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHD 678 (709)
Q Consensus 599 GQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~ 678 (709)
||||||||||||+++|+|||||||||+||+++|+.|++.|++..+|+|+|+||||++++++||||+||++|+|+|.|+|+
T Consensus 1175 Gq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1175 GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQ 1254 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHhhcccHHHHHHHhhhcc
Q 005205 679 DLLTKAGRYAQLWGQQNNT 697 (709)
Q Consensus 679 eLl~~~g~Y~~l~~~q~~~ 697 (709)
||++++|.|++||+.|...
T Consensus 1255 ~l~~~~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A 1255 QLLAQKGIYFSMVSVQAGA 1273 (1284)
T ss_dssp HHHHSCSHHHHHHHHHC--
T ss_pred HHHhCCCHHHHHHHHHhhc
Confidence 9999999999999998654
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=7.8e-75 Score=613.08 Aligned_cols=281 Identities=55% Similarity=0.883 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccH
Q 005205 419 VYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGK 498 (709)
Q Consensus 419 ~~~~l~~~~~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGK 498 (709)
.+..++++.++++|++++++.+++..+.....+.+...+.|+|+||+|+|++++++|+||||+|++||++||||||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGK 93 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGK 93 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHH
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchH
Confidence 35577889999999999998876544322222222334689999999999877789999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHH
Q 005205 499 STILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTI 578 (709)
Q Consensus 499 STL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I 578 (709)
|||+++|+|+|+|++|+|++||+|+++++..++|++||||||+|+||++||+|||.||.+.+++++++++++.+++++++
T Consensus 94 STLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i 173 (306)
T 3nh6_A 94 STILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAI 173 (306)
T ss_dssp HHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh
Q 005205 579 MNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM 658 (709)
Q Consensus 579 ~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~ 658 (709)
..+|+||||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++|+.|++.|+++.+++|+|+||||+++++
T Consensus 174 ~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~ 253 (306)
T 3nh6_A 174 MAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVV 253 (306)
T ss_dssp HHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHH
T ss_pred HhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred hcCeEEEEeCCEEEEecChHHHhhcccHHHHHHHhhhcchh
Q 005205 659 QCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTAD 699 (709)
Q Consensus 659 ~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~~~ 699 (709)
.||+|+||++|+|+|.|+|+||++.+|.|+++|..|...++
T Consensus 254 ~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~~~~~ 294 (306)
T 3nh6_A 254 NADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQEE 294 (306)
T ss_dssp TCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHHCC--
T ss_pred cCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999866544
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=9.3e-61 Score=492.82 Aligned_cols=238 Identities=42% Similarity=0.681 Sum_probs=227.7
Q ss_pred ceEEEEeEEEEec-CCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 457 GSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 457 g~I~f~nVsF~Y~-~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
.+|+++||+|+|+ +++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||+|+.+++...+|++|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 4799999999995 356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 536 ~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
+||||+|.+|++|++|||.++.+..+++++.++++.+++.+++..+|+|+++.+++++.+||||||||++|||||+++|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999876677888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhc-ccHHHHHHHhh
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK-AGRYAQLWGQQ 694 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~-~g~Y~~l~~~q 694 (709)
+||||||||+||+.+++.|.+.|+++.+++|+|+|||+++.++.||+|++|++|+|++.|+++|+++. ++.|++++..|
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~~ 245 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHhh
Confidence 99999999999999999999999998789999999999999999999999999999999999999987 89999998765
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.5e-59 Score=487.55 Aligned_cols=239 Identities=48% Similarity=0.831 Sum_probs=226.9
Q ss_pred ceEEEEeEEEEecCC--cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcc
Q 005205 457 GSIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~--~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~ 534 (709)
+.|+++||+|+|++. +++|+|+||+|++||++||+||||||||||+++|+|+++| +|+|.+||+|+.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 359999999999753 4799999999999999999999999999999999999987 8999999999999998899999
Q ss_pred eEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 535 IGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 535 i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
|+||||+|.+|+.|++|||.++.+..+++++.++++.+++.+++..+|+|+||.+++++.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999987656788899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHHHHhh
Q 005205 615 PILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 694 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q 694 (709)
+|||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.++.||+|++|++|+|++.|+++|+++.++.|.++|..|
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 254 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQ 254 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHhh
Confidence 99999999999999999999999999888899999999999999999999999999999999999999889999999877
Q ss_pred hc
Q 005205 695 NN 696 (709)
Q Consensus 695 ~~ 696 (709)
..
T Consensus 255 ~~ 256 (260)
T 2ghi_A 255 SG 256 (260)
T ss_dssp HC
T ss_pred hh
Confidence 44
No 14
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-60 Score=488.44 Aligned_cols=237 Identities=40% Similarity=0.652 Sum_probs=226.1
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+|+|++++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+.+...+|++|+||
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 78999999996457899999999999999999999999999999999999999999999999999988888899999999
Q ss_pred cCCCCCCchhHHHHHHcC-CCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 005205 539 PQDTVLFNDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (709)
Q Consensus 539 ~Q~~~LF~gTIreNI~~g-~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~IL 617 (709)
||+|.+|++|++|||.++ .+..+++++.++++.+++++++.++|+|+++.+++++.+||||||||++|||||+++|+||
T Consensus 82 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ll 161 (243)
T 1mv5_A 82 SQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKIL 161 (243)
T ss_dssp CCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred cCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999998 5567788899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHHHHhhh
Q 005205 618 LCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 695 (709)
Q Consensus 618 ILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 695 (709)
|||||||+||+.+++.|.+.|+++.+++|+|+|||+++.++.||+|++|++|+|++.|+++|+++..+.|+++|..|.
T Consensus 162 lLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 239 (243)
T 1mv5_A 162 MLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQL 239 (243)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCCC
T ss_pred EEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHHHhhh
Confidence 999999999999999999999988788999999999999999999999999999999999999988888999998764
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=8.6e-59 Score=484.41 Aligned_cols=240 Identities=35% Similarity=0.599 Sum_probs=224.4
Q ss_pred ceEEEEeEEEEecC--CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcc
Q 005205 457 GSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (709)
Q Consensus 457 g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~ 534 (709)
+.|+++||+|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.|+.+++...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999974 2689999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEcCCCCCCchhHHHHHHcCCCCCCH-HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 535 IGVVPQDTVLFNDTIFHNIRYGRLSATE-EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 535 i~~V~Q~~~LF~gTIreNI~~g~~~~s~-~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
|+||||++.+|+.|++|||.++.+..++ +++.++++.++++++++.+|+|+++.+++.+.+||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998655554 778888999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHHH
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW 691 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~ 691 (709)
|+|||||||||+||+.+.+.|.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+|++.|+++|+++..+.|.+++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 254 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHH
Confidence 999999999999999999999999999864 899999999999999999999999999999999999998889999999
Q ss_pred Hhhhc
Q 005205 692 GQQNN 696 (709)
Q Consensus 692 ~~q~~ 696 (709)
..|..
T Consensus 255 ~~~~~ 259 (271)
T 2ixe_A 255 EALAA 259 (271)
T ss_dssp HC---
T ss_pred HHhhc
Confidence 87743
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=6e-56 Score=483.01 Aligned_cols=227 Identities=33% Similarity=0.541 Sum_probs=216.7
Q ss_pred CCceEEEEeEEEEec-CCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhc
Q 005205 455 KGGSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533 (709)
Q Consensus 455 ~~g~I~f~nVsF~Y~-~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~ 533 (709)
..+.|+++||+|+|+ ++.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|++||+|+.+++...+|+
T Consensus 16 ~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 346799999999997 35689999999999999999999999999999999999998 9999999999999999999999
Q ss_pred ceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 534 ~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
.|+||+|++.||+.|++|||.+.. ...+++++++++.+++++++.++|.+|+|.++++|.+||||||||+||||||+++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998654 3568899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
|+|||||||||+||+.+.+.+.+.|+++.+++|+|+|||+++.+..||||+||++|+|++.|+++|+++.
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~ 243 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY 243 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHC
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999988889999999999999999999999999999999999999975
No 17
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.1e-55 Score=452.40 Aligned_cols=226 Identities=34% Similarity=0.561 Sum_probs=209.4
Q ss_pred eEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
.|+++||+|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +|+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 3899999999974 46899999999999999999999999999999999999999999999999 499
Q ss_pred EEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 005205 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (709)
Q Consensus 537 ~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~I 616 (709)
||||+|.+|+.|++|||.++.+ .++++..++++.+++.+.+..+|.|++|.+++++.+||||||||++|||||+++|+|
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 148 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI 148 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999864 345566777888888889999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHH---HhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHHHHh
Q 005205 617 LLCDEATSALDSTTEAEILNALK---SLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQ 693 (709)
Q Consensus 617 LILDEaTSaLD~~tE~~I~~~L~---~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~ 693 (709)
||||||||+||+.+++.+.+.|. ++.+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++..+.|.+++..
T Consensus 149 llLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 228 (237)
T 2cbz_A 149 YLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRT 228 (237)
T ss_dssp EEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHH
T ss_pred EEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHHHH
Confidence 99999999999999999999984 445689999999999999999999999999999999999999999999999998
Q ss_pred hhcc
Q 005205 694 QNNT 697 (709)
Q Consensus 694 q~~~ 697 (709)
|...
T Consensus 229 ~~~~ 232 (237)
T 2cbz_A 229 YASH 232 (237)
T ss_dssp TCC-
T ss_pred HHhh
Confidence 8654
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=7.1e-55 Score=444.20 Aligned_cols=221 Identities=26% Similarity=0.458 Sum_probs=202.7
Q ss_pred ceEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 457 g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
+.|+++||+|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| .|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 46999999999973 57899999999999999999999999999999999999999999999998 59
Q ss_pred EEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 536 ~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
+||||+|.+|++|++|||.++.+ ..+..+.++++.+++.+++..+|.+++|.+++++.+||||||||++|||||+++|+
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 150 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999853 34556667788889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHHH
Q 005205 616 ILLCDEATSALDSTTEAEILNA-LKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW 691 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~-L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~ 691 (709)
+||||||||+||+.+++.+.+. ++++.+++|+|+|||+++.++.||+|++|++|+|++.|+++|+++..+.|.+++
T Consensus 151 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 227 (229)
T 2pze_A 151 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227 (229)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHHHH
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHh
Confidence 9999999999999999999997 456556899999999999998999999999999999999999998777777665
No 19
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.8e-52 Score=434.19 Aligned_cols=221 Identities=29% Similarity=0.503 Sum_probs=189.6
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC--CCCHHHhhcce
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSI 535 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~--~~~~~~lR~~i 535 (709)
-|+++||+|+|++..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+|+. +.+...+|+.|
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i 86 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI 86 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence 5999999999976667999999999999999999999999999999999999999999999999994 34456789999
Q ss_pred EEEcCCC--CCCchhHHHHHHcCC--CCCCHHH----HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 005205 536 GVVPQDT--VLFNDTIFHNIRYGR--LSATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (709)
Q Consensus 536 ~~V~Q~~--~LF~gTIreNI~~g~--~~~s~~e----i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIA 607 (709)
|||||+| .+|..|++|||.++. ...+.++ +.++++..++ +........+||||||||++||
T Consensus 87 g~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-----------~~~~~~~~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGI-----------EHLKDKPTHCLSFGQKKRVAIA 155 (275)
T ss_dssp EEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC-----------GGGTTSBGGGSCHHHHHHHHHH
T ss_pred EEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhcCCcccCCHHHHHHHHHH
Confidence 9999997 588999999998863 2234444 3344444443 3333445568999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhcc
Q 005205 608 RAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 608 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
|||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+++|+++..
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 235 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 235 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCH
Confidence 99999999999999999999999999999998875 38999999999999865 9999999999999999999998765
Q ss_pred cHHHH
Q 005205 685 GRYAQ 689 (709)
Q Consensus 685 g~Y~~ 689 (709)
..+..
T Consensus 236 ~~~~~ 240 (275)
T 3gfo_A 236 EVIRK 240 (275)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 20
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.6e-52 Score=448.34 Aligned_cols=225 Identities=32% Similarity=0.507 Sum_probs=192.3
Q ss_pred ceEEEEeEEEEecCC---cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH---
Q 005205 457 GSIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES--- 530 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~--- 530 (709)
.-|+++||+++|+.. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+|+..++...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 359999999999742 46999999999999999999999999999999999999999999999999999998765
Q ss_pred hhcceEEEcCCCCCCch-hHHHHHHcCC--CCCCHH----HHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 531 LRKSIGVVPQDTVLFND-TIFHNIRYGR--LSATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~g-TIreNI~~g~--~~~s~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+|+.||||||++.+|.. ||+|||.++. ...+.+ ++.++++..++.++ ......+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~-----------~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK-----------HDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGG-----------TTCCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHH
Confidence 47899999999999876 9999998862 123333 34555555555433 334456899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHH
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 680 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eL 680 (709)
++|||||+.+|+|||||||||+||+.+.+.|.+.|+++. .|+|+|+|||+++.+.. ||||+||++|+|++.|+++|+
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999875 38999999999999875 999999999999999999999
Q ss_pred hhcc-cHH-HHHHH
Q 005205 681 LTKA-GRY-AQLWG 692 (709)
Q Consensus 681 l~~~-g~Y-~~l~~ 692 (709)
+... ..| +.+..
T Consensus 252 ~~~p~~~~~~~~~~ 265 (366)
T 3tui_C 252 FSHPKTPLAQKFIQ 265 (366)
T ss_dssp HSSCCSHHHHHHHH
T ss_pred HhCCCcHHHHHHHh
Confidence 8753 334 34443
No 21
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-51 Score=423.29 Aligned_cols=219 Identities=25% Similarity=0.465 Sum_probs=190.9
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHh-hcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~l-R~~i~ 536 (709)
-|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+...+ |+.|+
T Consensus 6 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 6 VLEVQSLHVYYGA-IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred eEEEEeEEEEECC-eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 4899999999964 689999999999999999999999999999999999999999999999999998887665 55699
Q ss_pred EEcCCCCCCch-hHHHHHHcCC-CCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 537 VVPQDTVLFND-TIFHNIRYGR-LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~-~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
||||++.+|.+ |++||+.++. +..+.++..+.+ .+.++.++ |++...+....+||||||||++|||||+.+|
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p 158 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSRP 158 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999999987 9999999874 222333333333 23455554 4556667778899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 615 PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++|+.+.
T Consensus 159 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 159 KLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999999998875 689999999999876 56999999999999999999999764
No 22
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.9e-51 Score=432.07 Aligned_cols=217 Identities=27% Similarity=0.471 Sum_probs=184.4
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
+.|+++||+|.| +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +|+
T Consensus 39 ~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~ 102 (290)
T 2bbs_A 39 DSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RIS 102 (290)
T ss_dssp -----------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEE
T ss_pred ceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEE
Confidence 469999999964 5799999999999999999999999999999999999999999999998 599
Q ss_pred EEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 005205 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (709)
Q Consensus 537 ~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~I 616 (709)
||||++.+|++|++|||. +.. ..+..+.++++..++.+++..+|.+++|.+++++.+||||||||++|||||+++|++
T Consensus 103 ~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l 180 (290)
T 2bbs_A 103 FCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180 (290)
T ss_dssp EECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE
T ss_pred EEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE
Confidence 999999999999999998 542 345556677888899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHH-HHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHHH
Q 005205 617 LLCDEATSALDSTTEAEILNAL-KSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW 691 (709)
Q Consensus 617 LILDEaTSaLD~~tE~~I~~~L-~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~ 691 (709)
||||||||+||+.+++.+.+.+ +++.+++|+|+|||+++.++.||+|++|++|++++.|+++|+++....|.+.+
T Consensus 181 llLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 256 (290)
T 2bbs_A 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKL 256 (290)
T ss_dssp EEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhhcHHHHHHH
Confidence 9999999999999999999874 55556899999999999999999999999999999999999987555565544
No 23
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=5.2e-51 Score=417.19 Aligned_cols=212 Identities=31% Similarity=0.440 Sum_probs=180.3
Q ss_pred EEEEeEEEEecCC---cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHh----
Q 005205 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL---- 531 (709)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~l---- 531 (709)
|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 7899999999742 469999999999999999999999999999999999999999999999999999997764
Q ss_pred hcceEEEcCCCCCCch-hHHHHHHcCC-----CCCCHHH----HHHHHHHHchHHHHHhCCCCcccc-ccCCCCCCChHH
Q 005205 532 RKSIGVVPQDTVLFND-TIFHNIRYGR-----LSATEEE----VYDAARRAAIHDTIMNFPAKYSTV-VGERGLKLSGGE 600 (709)
Q Consensus 532 R~~i~~V~Q~~~LF~g-TIreNI~~g~-----~~~s~~e----i~~A~~~a~l~~~I~~Lp~G~dT~-vGe~G~~LSGGQ 600 (709)
|++||||+|+|.+|.. |++||+.++. ...+.++ +.++++..++ +.. .......|||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL-----------EERFANHKPNQLSGGQ 150 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTC-----------CGGGTTCCGGGSCHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCC-----------ChhhhhCChhhCCHHH
Confidence 4579999999999987 9999998741 1223333 3333333332 221 245567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhhcCeEEEEeCCEEEEecChH
Q 005205 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHD 678 (709)
Q Consensus 601 rQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~ 678 (709)
|||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++..+.||+|++|++|+|++.|+.+
T Consensus 151 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChh
Confidence 9999999999999999999999999999999999999998753 89999999999988889999999999999999877
Q ss_pred HHh
Q 005205 679 DLL 681 (709)
Q Consensus 679 eLl 681 (709)
++.
T Consensus 231 ~~~ 233 (235)
T 3tif_A 231 GFD 233 (235)
T ss_dssp ---
T ss_pred hhc
Confidence 754
No 24
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=6.5e-51 Score=423.55 Aligned_cols=221 Identities=28% Similarity=0.439 Sum_probs=191.7
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+.+.+...+++.++|
T Consensus 11 ~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 11 LLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 599999999995 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCC-CchhHHHHHHcCCCC----CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 005205 538 VPQDTVL-FNDTIFHNIRYGRLS----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (709)
Q Consensus 538 V~Q~~~L-F~gTIreNI~~g~~~----~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~ 612 (709)
|+|++.+ |+.|++||+.++... ..++++.++++..++.++ ......+||||||||++|||||+.
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~QRv~iAraL~~ 158 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLAL-----------AQRDYRVLSGGEQQRVQLARVLAQ 158 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTT-----------TTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred EecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhH-----------hcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999987 678999999987432 223455566665554332 222335799999999999999999
Q ss_pred ------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhc
Q 005205 613 ------APPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 613 ------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|++..
T Consensus 159 ~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 159 LWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp TCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH
T ss_pred ccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc
Confidence 9999999999999999999999999988753 479999999999987 5999999999999999999999864
Q ss_pred ccHHHHHH
Q 005205 684 AGRYAQLW 691 (709)
Q Consensus 684 ~g~Y~~l~ 691 (709)
. ...+.|
T Consensus 239 ~-~l~~~~ 245 (266)
T 4g1u_C 239 E-TLTQWY 245 (266)
T ss_dssp H-HHHHHC
T ss_pred H-HHHHHh
Confidence 2 334444
No 25
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=5.5e-50 Score=415.46 Aligned_cols=214 Identities=33% Similarity=0.508 Sum_probs=185.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC--CCCHHHhhcce
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSI 535 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~--~~~~~~lR~~i 535 (709)
-|+++||+|+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+. ..+...+|++|
T Consensus 24 ~l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 24 MIDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp SEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred eEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 499999999995 468999999999999999999999999999999999999999999999999985 44566788899
Q ss_pred EEEcCCCCCCch-hHHHHHHcCC---CCCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 005205 536 GVVPQDTVLFND-TIFHNIRYGR---LSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (709)
Q Consensus 536 ~~V~Q~~~LF~g-TIreNI~~g~---~~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIA 607 (709)
+||||++.+|.. |++|||.++. ...+. +++.++++..++.+ .......+||||||||++||
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv~lA 171 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD-----------KAHAYPDSLSGGQAQRVAIA 171 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-----------GTTSCGGGSCHHHHHHHHHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------HhcCChhhCCHHHHHHHHHH
Confidence 999999999987 9999998852 12232 23444444444433 33445578999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhc
Q 005205 608 RAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 608 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
|||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++|+++.
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999998874 4899999999999987 5999999999999999999999864
No 26
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.3e-50 Score=419.97 Aligned_cols=212 Identities=29% Similarity=0.496 Sum_probs=188.8
Q ss_pred EEEEeEEEEec-CC---cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcc
Q 005205 459 IQFDNVHFSYL-TE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (709)
Q Consensus 459 I~f~nVsF~Y~-~~---~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~ 534 (709)
|+++||+|+|+ ++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 89999999997 33 5799999999999999999999999999999999999999999999999998652 77889
Q ss_pred eEEEcCCC--CCCchhHHHHHHcCCCC-----CCHHHHHHHHHHHchH--HHHHhCCCCccccccCCCCCCChHHHHHHH
Q 005205 535 IGVVPQDT--VLFNDTIFHNIRYGRLS-----ATEEEVYDAARRAAIH--DTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (709)
Q Consensus 535 i~~V~Q~~--~LF~gTIreNI~~g~~~-----~s~~ei~~A~~~a~l~--~~I~~Lp~G~dT~vGe~G~~LSGGQrQRia 605 (709)
|+||||+| .+|+.|++|||.++... ..++++.++++..++. ++..+.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999996 57889999999987321 2245678888888876 6654443 579999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 606 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999874 58999999999999875 999999999999999999999865
Q ss_pred c
Q 005205 684 A 684 (709)
Q Consensus 684 ~ 684 (709)
.
T Consensus 229 ~ 229 (266)
T 2yz2_A 229 Y 229 (266)
T ss_dssp S
T ss_pred c
Confidence 3
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-50 Score=416.58 Aligned_cols=213 Identities=25% Similarity=0.456 Sum_probs=187.3
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
+.|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+ ....+|++|+
T Consensus 14 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~ 91 (256)
T 1vpl_A 14 GAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLIS 91 (256)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEE
T ss_pred CeEEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEE
Confidence 4699999999995 5689999999999999999999999999999999999999999999999999977 5667889999
Q ss_pred EEcCCCCCCch-hHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 005205 537 VVPQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
||||++.+|.+ |++||+.++.. ..+. +++.++++..++.++. .....+||||||||++||||
T Consensus 92 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~qRv~lAra 160 (256)
T 1vpl_A 92 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI-----------KDRVSTYSKGMVRKLLIARA 160 (256)
T ss_dssp EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG-----------GSBGGGCCHHHHHHHHHHHH
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHh-----------cCChhhCCHHHHHHHHHHHH
Confidence 99999999887 99999987521 1222 3455566666554432 33456899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCCEEEEecChHHHhh
Q 005205 610 FLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 610 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
|+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++|+.+
T Consensus 161 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 161 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999998875 58999999999999887 99999999999999999999975
No 28
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.7e-50 Score=410.60 Aligned_cols=208 Identities=27% Similarity=0.409 Sum_probs=178.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH---hh-c
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR-K 533 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~---lR-~ 533 (709)
-|+++||+|+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +| +
T Consensus 4 ~l~~~~l~~~y~-~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 4 ILRAENIKKVIR-GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred EEEEEeEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 489999999996 468999999999999999999999999999999999999999999999999998887653 34 7
Q ss_pred ceEEEcCCCCCCch-hHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 005205 534 SIGVVPQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (709)
Q Consensus 534 ~i~~V~Q~~~LF~g-TIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaI 606 (709)
+|+||||++.+|.. |++||+.++.. ..+. +++.++++..++ +........+||||||||++|
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~l 151 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGL-----------GDKLSRKPYELSGGEQQRVAI 151 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-----------TTCTTCCGGGSCHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHHHHH
Confidence 89999999999874 99999987521 1222 233444444433 223344456899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEEeCCEEEEecCh
Q 005205 607 ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSH 677 (709)
Q Consensus 607 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth 677 (709)
||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.++.||+|++|++|+|++.|+.
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 999999999999999999999999999999998874 48999999999999888999999999999999873
No 29
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=9e-50 Score=413.60 Aligned_cols=215 Identities=26% Similarity=0.409 Sum_probs=185.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHhhcceE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~-~~lR~~i~ 536 (709)
-|+++||+|+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|+.|+
T Consensus 7 ~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 7 ILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred EEEEeeeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 499999999995 4689999999999999999999999999999999999999999999999999988765 34678899
Q ss_pred EEcCCCCCCc-hhHHHHHHcCCCC---------------CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHH
Q 005205 537 VVPQDTVLFN-DTIFHNIRYGRLS---------------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE 600 (709)
Q Consensus 537 ~V~Q~~~LF~-gTIreNI~~g~~~---------------~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ 600 (709)
||||++.+|. .|++|||.++... .+.++.. ..+.+.++.+ |++........+|||||
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq 158 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSGGQ 158 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCHHH
T ss_pred EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCHHH
Confidence 9999999986 5999999986321 1111111 1233445554 55555666778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChH
Q 005205 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHD 678 (709)
Q Consensus 601 rQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~ 678 (709)
|||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++
T Consensus 159 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 238 (257)
T 1g6h_A 159 MKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGE 238 (257)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHH
Confidence 999999999999999999999999999999999999998875 4899999999999875 59999999999999999999
Q ss_pred HH
Q 005205 679 DL 680 (709)
Q Consensus 679 eL 680 (709)
|+
T Consensus 239 ~~ 240 (257)
T 1g6h_A 239 EE 240 (257)
T ss_dssp HH
T ss_pred Hh
Confidence 93
No 30
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-50 Score=417.41 Aligned_cols=215 Identities=32% Similarity=0.499 Sum_probs=185.6
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC----------CCC
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC----------EVT 527 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~----------~~~ 527 (709)
-|+++||+|+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. +++
T Consensus 6 ~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 6 KLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 499999999995 468999999999999999999999999999999999999999999999999986 244
Q ss_pred H---HHhhcceEEEcCCCCCCch-hHHHHHHcCC---CCCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCC
Q 005205 528 L---ESLRKSIGVVPQDTVLFND-TIFHNIRYGR---LSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKL 596 (709)
Q Consensus 528 ~---~~lR~~i~~V~Q~~~LF~g-TIreNI~~g~---~~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~L 596 (709)
. ..+|+.|+||||++.+|.. |++|||.++. ...+ ++++.++++..++.+++ ......+|
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~L 154 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPVHL 154 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGGGS
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchh----------hcCCcccC
Confidence 3 3568899999999999987 9999998842 1222 23455556655555441 23345689
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEe
Q 005205 597 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQ 674 (709)
Q Consensus 597 SGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~ 674 (709)
|||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.
T Consensus 155 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (262)
T 1b0u_A 155 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 234 (262)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999998875 4799999999999986 5999999999999999
Q ss_pred cChHHHhhc
Q 005205 675 GSHDDLLTK 683 (709)
Q Consensus 675 Gth~eLl~~ 683 (709)
|+++|+++.
T Consensus 235 g~~~~~~~~ 243 (262)
T 1b0u_A 235 GDPEQVFGN 243 (262)
T ss_dssp ECHHHHHHS
T ss_pred CCHHHHHhC
Confidence 999999864
No 31
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=7.6e-50 Score=429.10 Aligned_cols=215 Identities=28% Similarity=0.492 Sum_probs=184.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC--CCHHHhhcce
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE--VTLESLRKSI 535 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~--~~~~~lR~~i 535 (709)
.|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+|+.+ .+....++.|
T Consensus 4 ~l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 489999999995 5789999999999999999999999999999999999999999999999999832 2234567889
Q ss_pred EEEcCCCCCCch-hHHHHHHcCCCC--CC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 536 GVVPQDTVLFND-TIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 536 ~~V~Q~~~LF~g-TIreNI~~g~~~--~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
|||+|++.||.. |++|||.|+... .+ ++++.++++..++.++.. ....+||||||||++|||
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------r~~~~LSGGq~QRValAr 151 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG-----------RYPHELSGGQQQRAALAR 151 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTT-----------SCGGGSCHHHHHHHHHHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHHHHHHH
Confidence 999999999965 999999997421 12 234566666666554433 334689999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
||+.+|++||||||||+||+.+...+.+.|.++. .++|+|+|||+++.+. .||||+||++|+|++.|+++|+++..
T Consensus 152 AL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 152 ALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 9999999999999999999999999998776653 4899999999999875 59999999999999999999998753
No 32
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=4.9e-50 Score=433.34 Aligned_cols=217 Identities=29% Similarity=0.475 Sum_probs=187.6
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+.+.. ++.|||
T Consensus 3 ~l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 79 (381)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEE
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEE
Confidence 489999999995 56899999999999999999999999999999999999999999999999999988765 478999
Q ss_pred EcCCCCCCch-hHHHHHHcCCC--CCCHH----HHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 538 VPQDTVLFND-TIFHNIRYGRL--SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~--~~s~~----ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|+|++.||.. ||+|||.|+.. ..+.+ ++.++++..++.++ ....-.+||||||||++|||||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~r~p~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL-----------LDRKPKALSGGQRQRVAIGRTL 148 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGG-----------TTCCGGGSCHHHHHHHHHHHHH
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhHCCHHHHHHHHHHHHH
Confidence 9999999975 99999998631 23333 34455555554443 3334468999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhcc-cH
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTKA-GR 686 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~~-g~ 686 (709)
+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||||+||++|+|++.|+++|+.+.. ..
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~ 228 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 228 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBH
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccH
Confidence 999999999999999999999999999988753 899999999998875 59999999999999999999998753 44
Q ss_pred HH
Q 005205 687 YA 688 (709)
Q Consensus 687 Y~ 688 (709)
|.
T Consensus 229 ~v 230 (381)
T 3rlf_A 229 FV 230 (381)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 33
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.5e-49 Score=409.10 Aligned_cols=217 Identities=28% Similarity=0.396 Sum_probs=191.8
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+|+ ++|+|+||+|++||++||+||||||||||+++|+|+++|+ |+|.++|.++.+++...+|++|+|
T Consensus 4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 3899999986 6999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred EcCCCCCCch-hHHHHHHcCC-CCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 538 VPQDTVLFND-TIFHNIRYGR-LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~-~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
|||++.+|.+ |++|||.++. +..+++++.++++..++.++. .....+||||||||++|||||+++|+
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~lAraL~~~p~ 146 (249)
T 2qi9_C 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLAAVVLQITP 146 (249)
T ss_dssp ECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGT-----------TSBGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred ECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999876 9999999974 222366777777777665432 34466899999999999999999999
Q ss_pred -------EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhcccH
Q 005205 616 -------ILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTKAGR 686 (709)
Q Consensus 616 -------ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~~g~ 686 (709)
+||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++|+++....
T Consensus 147 ~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 226 (249)
T 2qi9_C 147 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNL 226 (249)
T ss_dssp TTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSCHHHH
T ss_pred cCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcChhH
Confidence 999999999999999999999999874 589999999999998 56999999999999999999999863333
Q ss_pred HHHHHH
Q 005205 687 YAQLWG 692 (709)
Q Consensus 687 Y~~l~~ 692 (709)
.+.|.
T Consensus 227 -~~~~~ 231 (249)
T 2qi9_C 227 -AQAYG 231 (249)
T ss_dssp -HHHHS
T ss_pred -HHHhC
Confidence 45553
No 34
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.3e-49 Score=427.68 Aligned_cols=214 Identities=31% Similarity=0.519 Sum_probs=187.0
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
..|+++||+++|+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .|+.||
T Consensus 13 ~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 90 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVG 90 (355)
T ss_dssp EEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEE
T ss_pred ceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEE
Confidence 469999999999545679999999999999999999999999999999999999999999999999987664 478899
Q ss_pred EEcCCCCCCch-hHHHHHHcCCC--CCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 005205 537 VVPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~~--~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
||+|++.||.. |++|||.|+.. ..+ ++++.++++..++.++..+ .-.+||||||||++||||
T Consensus 91 ~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r-----------~~~~LSGGq~QRvalArA 159 (355)
T 1z47_A 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANR-----------FPHELSGGQQQRVALARA 159 (355)
T ss_dssp EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHHHHHHHH
Confidence 99999999975 99999998631 122 2345566666666554333 335899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhc
Q 005205 610 FLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 610 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
|+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+.+.
T Consensus 160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp HTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988753 799999999999875 5999999999999999999999875
No 35
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=6.3e-50 Score=418.76 Aligned_cols=214 Identities=28% Similarity=0.443 Sum_probs=184.2
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC--CCCHHHhhcce
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSI 535 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~--~~~~~~lR~~i 535 (709)
-|+++||+|+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. +.+...+|++|
T Consensus 21 ~l~~~~l~~~y~-~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i 99 (279)
T 2ihy_A 21 LIQLDQIGRMKQ-GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI 99 (279)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred eEEEEeEEEEEC-CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcE
Confidence 599999999996 468999999999999999999999999999999999999999999999999998 78888899999
Q ss_pred EEEcCCCCC-Cch--hHHHHHHcCCCC-------CCH---HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHH
Q 005205 536 GVVPQDTVL-FND--TIFHNIRYGRLS-------ATE---EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (709)
Q Consensus 536 ~~V~Q~~~L-F~g--TIreNI~~g~~~-------~s~---~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQ 602 (709)
+||||++.+ |.. |++|||.++... ..+ +++.++++..++ +........+|||||||
T Consensus 100 ~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGqkq 168 (279)
T 2ihy_A 100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGM-----------SAKAQQYIGYLSTGEKQ 168 (279)
T ss_dssp EEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTC-----------GGGTTSBGGGSCHHHHH
T ss_pred EEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCC-----------hhHhcCChhhCCHHHHH
Confidence 999999865 555 999999986311 122 233444444433 33334455689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeE--EEEecCchHHh-hcCeEEEEeCCEEEEecChH
Q 005205 603 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTS--IFIAHRLTTAM-QCDEIIVLENGKVIEQGSHD 678 (709)
Q Consensus 603 RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~Tv--IvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~ 678 (709)
|++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+ |+|||+++.+. .||+|++|++|+|++.|+++
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 248 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999988754 7999 99999999874 69999999999999999999
Q ss_pred HHhhc
Q 005205 679 DLLTK 683 (709)
Q Consensus 679 eLl~~ 683 (709)
|+.+.
T Consensus 249 ~~~~~ 253 (279)
T 2ihy_A 249 DILTS 253 (279)
T ss_dssp HHCSH
T ss_pred HHhcc
Confidence 99764
No 36
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-49 Score=407.35 Aligned_cols=209 Identities=31% Similarity=0.523 Sum_probs=179.8
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+|+|++ +|+|+||+|++ |++||+||||||||||+++|+|+++|++|+|.+||+++.+.+ ..|++|+||
T Consensus 2 l~~~~l~~~y~~---~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v 75 (240)
T 2onk_A 2 FLKVRAEKRLGN---FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFV 75 (240)
T ss_dssp CEEEEEEEEETT---EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCC
T ss_pred EEEEEEEEEeCC---EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEE
Confidence 689999999953 59999999999 999999999999999999999999999999999999997643 457889999
Q ss_pred cCCCCCCch-hHHHHHHcCCCCCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 539 PQDTVLFND-TIFHNIRYGRLSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 539 ~Q~~~LF~g-TIreNI~~g~~~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
||++.+|.. |++||+.++..... ++++.++++..++.+ .......+||||||||++|||||+.+
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-----------LLDRKPARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTT-----------TTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHH-----------HhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999987 99999999753211 233444444444332 23334568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++|+++..
T Consensus 145 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999988753 899999999999764 59999999999999999999998654
No 37
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=4.3e-49 Score=424.55 Aligned_cols=213 Identities=33% Similarity=0.516 Sum_probs=187.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|||
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGM 79 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEE
Confidence 389999999995 46899999999999999999999999999999999999999999999999999887753 678999
Q ss_pred EcCCCCCCch-hHHHHHHcCCCC--CC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 538 VPQDTVLFND-TIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~~--~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|+|++.+|.. |++|||.|+... .+ ++++.++++..++.++..+. -.+||||||||++|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------~~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRK-----------PTQLSGGQQQRVALARAL 148 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSC-----------GGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999999975 999999997421 22 24566677776665544433 358999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+++..
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999988753 79999999999987 469999999999999999999998753
No 38
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.8e-49 Score=427.91 Aligned_cols=213 Identities=31% Similarity=0.517 Sum_probs=185.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. +++|||
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGL 79 (362)
T ss_dssp CEEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEE
Confidence 389999999995 46899999999999999999999999999999999999999999999999999887754 578999
Q ss_pred EcCCCCCCch-hHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 538 VPQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|+|++.||.. |++|||.|+.. ..+. +++.++++..++.++..+ .-.+||||||||++|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNR-----------YPWQLSGGQQQRVAIARAL 148 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-----------CGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 9999999975 99999998621 1222 345556666555443333 3458999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|+||++|+|++.|+++|+++..
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999988753 89999999999986 469999999999999999999998753
No 39
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.2e-49 Score=409.01 Aligned_cols=211 Identities=25% Similarity=0.359 Sum_probs=173.2
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCCCEEEECCEeCCCCCHHHh-hcc
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKS 534 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl--y~p~~G~I~idG~di~~~~~~~l-R~~ 534 (709)
-|+++||+|+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.|+.+.+.... |..
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASID-GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEEC-CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 389999999995 46899999999999999999999999999999999999 89999999999999998887665 456
Q ss_pred eEEEcCCCCCCch-hHHHHHHcCCC-----CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCC-CChHHHHH
Q 005205 535 IGVVPQDTVLFND-TIFHNIRYGRL-----SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK-LSGGEKQR 603 (709)
Q Consensus 535 i~~V~Q~~~LF~g-TIreNI~~g~~-----~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~-LSGGQrQR 603 (709)
++||||+|.+|.+ |++||+.++.. .... +++.++++..++. ++-.+..+ .+ ||||||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------~~~~~~~~----~~~LSgGqkQr 151 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWD------ESYLSRYL----NEGFSGGEKKR 151 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCC------GGGGGSBT----TCC----HHHH
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCC------hhHhcCCc----ccCCCHHHHHH
Confidence 9999999999986 99999987521 1121 2333444433331 01122222 34 99999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh--cCeEEEEeCCEEEEecChHH
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ--CDEIIVLENGKVIEQGSHDD 679 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~--aD~Iivl~~G~Ive~Gth~e 679 (709)
++|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 152 NEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999999999999999885 47999999999999886 59999999999999999873
No 40
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.5e-49 Score=422.41 Aligned_cols=211 Identities=34% Similarity=0.514 Sum_probs=185.7
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
|+++||+++|++ + +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+. .|++||||
T Consensus 2 l~~~~l~~~y~~-~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v 77 (348)
T 3d31_A 2 IEIESLSRKWKN-F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFV 77 (348)
T ss_dssp EEEEEEEEECSS-C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEE
T ss_pred EEEEEEEEEECC-E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEE
Confidence 789999999964 5 9999999999999999999999999999999999999999999999999987654 47789999
Q ss_pred cCCCCCCch-hHHHHHHcCCC---CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 539 PQDTVLFND-TIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 539 ~Q~~~LF~g-TIreNI~~g~~---~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
+|++.||.. |++|||.|+.. ...++++.++++..++.++..+ ...+||||||||++|||||+.+|
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-----------NPLTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTS-----------CGGGSCHHHHHHHHHHHHTTSCC
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999986 99999998621 1123667777777766554333 33589999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 615 PILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.+..
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999999988753 89999999999876 569999999999999999999998753
No 41
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=9.5e-49 Score=423.81 Aligned_cols=213 Identities=25% Similarity=0.431 Sum_probs=181.0
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.. +++|||
T Consensus 11 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM 87 (372)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEE
T ss_pred eEEEEEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEE
Confidence 499999999995 46799999999999999999999999999999999999999999999999999887754 578999
Q ss_pred EcCCCCCCch-hHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 538 VPQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 538 V~Q~~~LF~g-TIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
|+|++.||.. |++|||.|+.. ..+. +++.++++..++.++.. ..-.+||||||||++|||||
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~~~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-----------RYPAQLSGGQRQRVAVARAI 156 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTT-----------SCTTTCCSSCHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHH
Confidence 9999999975 99999999843 2233 34555666555544433 34468999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhcc
Q 005205 611 LKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 611 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~~ 684 (709)
+.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|+++..
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999988753 79999999999987 469999999999999999999998753
No 42
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=4.1e-49 Score=424.86 Aligned_cols=215 Identities=29% Similarity=0.445 Sum_probs=186.0
Q ss_pred eEEEEeEEEEecCCcc--cceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC---HHHhh
Q 005205 458 SIQFDNVHFSYLTERK--ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT---LESLR 532 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~--vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~---~~~lR 532 (709)
.|+++||+++|++ .+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+ ....|
T Consensus 3 ~l~i~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECC-EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 3899999999964 56 999999999999999999999999999999999999999999999999987621 33457
Q ss_pred cceEEEcCCCCCCch-hHHHHHHcCCC--CCC----HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 005205 533 KSIGVVPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (709)
Q Consensus 533 ~~i~~V~Q~~~LF~g-TIreNI~~g~~--~~s----~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRia 605 (709)
++||||+|++.||.. |++|||.|+.. ..+ ++++.++++..++.++..+. -.+||||||||++
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~-----------~~~LSGGq~QRva 150 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF-----------PRELSGAQQQRVA 150 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC-----------GGGSCHHHHHHHH
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHHH
Confidence 899999999999986 99999999743 123 23455666666665543333 3589999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHhh
Q 005205 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 606 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+++
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988753 799999999999875 599999999999999999999987
Q ss_pred cc
Q 005205 683 KA 684 (709)
Q Consensus 683 ~~ 684 (709)
..
T Consensus 231 ~p 232 (353)
T 1oxx_K 231 NP 232 (353)
T ss_dssp SC
T ss_pred Cc
Confidence 53
No 43
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.3e-48 Score=406.75 Aligned_cols=217 Identities=24% Similarity=0.329 Sum_probs=181.7
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCCCEEEECCEeCCCCCHHHh-hcc
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKS 534 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl--y~p~~G~I~idG~di~~~~~~~l-R~~ 534 (709)
.|+++||+|+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.|+.+++.... |..
T Consensus 20 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 20 MLSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred eEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 599999999995 56899999999999999999999999999999999999 67999999999999998887665 456
Q ss_pred eEEEcCCCCCCch-hHHHHHHcCC---------CCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCC-C-CCChHHHH
Q 005205 535 IGVVPQDTVLFND-TIFHNIRYGR---------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG-L-KLSGGEKQ 602 (709)
Q Consensus 535 i~~V~Q~~~LF~g-TIreNI~~g~---------~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G-~-~LSGGQrQ 602 (709)
|+||+|++.+|.+ |++||+.++. +..+.++..+ .+.+.++.+ |+++.+.++- . +|||||||
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq~Q 171 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGEKK 171 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHHHH
T ss_pred EEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHHHH
Confidence 9999999999877 8999986531 1223333221 122334332 4443333333 2 59999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh--cCeEEEEeCCEEEEecChHH
Q 005205 603 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ--CDEIIVLENGKVIEQGSHDD 679 (709)
Q Consensus 603 RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~--aD~Iivl~~G~Ive~Gth~e 679 (709)
|++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|++.|++++
T Consensus 172 Rv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 251 (267)
T 2zu0_C 172 RNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTL 251 (267)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTH
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999875 47999999999999876 89999999999999999998
Q ss_pred Hhh
Q 005205 680 LLT 682 (709)
Q Consensus 680 Ll~ 682 (709)
+..
T Consensus 252 ~~~ 254 (267)
T 2zu0_C 252 VKQ 254 (267)
T ss_dssp HHH
T ss_pred Hhh
Confidence 753
No 44
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.3e-48 Score=423.45 Aligned_cols=212 Identities=28% Similarity=0.447 Sum_probs=184.7
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC------CCHHHh
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE------VTLESL 531 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~------~~~~~l 531 (709)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+ ++. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--K 79 (372)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--G
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--h
Confidence 489999999995 4689999999999999999999999999999999999999999999999999876 554 3
Q ss_pred hcceEEEcCCCCCCc-hhHHHHHHcCCC--CCCH----HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 532 RKSIGVVPQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 532 R~~i~~V~Q~~~LF~-gTIreNI~~g~~--~~s~----~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
+++||||+|++.||. .|++|||.|+.. ..+. +++.++++..++.++..+ .-.+||||||||+
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QRv 148 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-----------KPRELSGGQRQRV 148 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-----------CGGGSCHHHHHHH
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-----------CcccCCHHHHHHH
Confidence 678999999999996 599999998631 1232 345566666666544333 3358999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHh-hcCeEEEEeCCEEEEecChHHHh
Q 005205 605 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 605 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~-~aD~Iivl~~G~Ive~Gth~eLl 681 (709)
||||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|++
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999988753 799999999999875 59999999999999999999998
Q ss_pred hc
Q 005205 682 TK 683 (709)
Q Consensus 682 ~~ 683 (709)
+.
T Consensus 229 ~~ 230 (372)
T 1g29_1 229 DK 230 (372)
T ss_dssp HS
T ss_pred hC
Confidence 75
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.3e-48 Score=402.13 Aligned_cols=206 Identities=22% Similarity=0.299 Sum_probs=181.7
Q ss_pred EEEEeEEEEecCC---cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
|+++||+|+|++. +++|+|+||+|+ ||++||+||||||||||+++|+|++ |++|+|.++|.++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999642 689999999999 9999999999999999999999999 9999999999998765 33 7899
Q ss_pred E-EEcCCCCCCchhHHHHHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhc
Q 005205 536 G-VVPQDTVLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 536 ~-~V~Q~~~LF~gTIreNI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQrQRiaIARAll 611 (709)
+ ||||++.+ +.|++|||.++.+ ...++++.++++..+ ++ ........+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALK-----------LGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTT-----------CCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcC-----------CChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999999 9999999988632 334555666555544 44 4455667799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcC-eEEEEeCCEEEEecChHHHhhc
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCD-EIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD-~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
.+|++||||||||+||+++.+.+.+.|+++.+ |+|+|||+++.+. .|| +|++|++|++++.|+++|+.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999998755 9999999999875 699 9999999999999999999854
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.6e-48 Score=400.22 Aligned_cols=208 Identities=27% Similarity=0.411 Sum_probs=177.6
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
-|+++||+|+|++++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. +|+.|+|
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~ 70 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGF 70 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEE
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEE
Confidence 489999999996357899999999999999999999999999999999999999999998 4678999
Q ss_pred EcCCCCCC-chhHHHHHHcCCC---C----CC---HHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 005205 538 VPQDTVLF-NDTIFHNIRYGRL---S----AT---EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (709)
Q Consensus 538 V~Q~~~LF-~gTIreNI~~g~~---~----~s---~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaI 606 (709)
|||++.+| +.|++|||.++.. . .. ++++.++++..++.++ ......+||||||||++|
T Consensus 71 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~l 139 (253)
T 2nq2_C 71 VPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHL-----------AKREFTSLSGGQRQLILI 139 (253)
T ss_dssp ECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGG-----------TTSBGGGSCHHHHHHHHH
T ss_pred EcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHH-----------hcCChhhCCHHHHHHHHH
Confidence 99999987 6799999998741 0 11 2345555555555433 333456899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHH-hhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 607 ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 607 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti-~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
||||+.+|+|||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|+ ++.|+++|+++.
T Consensus 140 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~~ 218 (253)
T 2nq2_C 140 ARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILTS 218 (253)
T ss_dssp HHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCCH
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhCc
Confidence 9999999999999999999999999999999988754 79999999999988 5699999999999 999999999754
Q ss_pred ccHHHHHH
Q 005205 684 AGRYAQLW 691 (709)
Q Consensus 684 ~g~Y~~l~ 691 (709)
. .+.+.+
T Consensus 219 ~-~~~~~~ 225 (253)
T 2nq2_C 219 E-NLTALF 225 (253)
T ss_dssp H-HHHHHH
T ss_pred H-HHHHHh
Confidence 2 344444
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.9e-47 Score=380.84 Aligned_cols=197 Identities=18% Similarity=0.308 Sum_probs=168.1
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
..|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+|+.|+
T Consensus 9 ~~l~~~~ls~~y~~--~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~ 81 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 81 (214)
T ss_dssp CEEEEEEEEEESSS--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred ceEEEEEEEEEeCC--eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEE
Confidence 46999999999964 8999999999999999999999999999999999999999999999999986 3688999
Q ss_pred EEcCCCCCCch-hHHHHHHcCCC----CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 537 VVPQDTVLFND-TIFHNIRYGRL----SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 537 ~V~Q~~~LF~g-TIreNI~~g~~----~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
||||++.+|.+ |++|||.++.. ...++++.++++.. |++.. .....+||||||||++|||||+
T Consensus 82 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~-~~~~~~LSgGqkqrv~laraL~ 149 (214)
T 1sgw_A 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV-----------EVLDL-KKKLGELSQGTIRRVQLASTLL 149 (214)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT-----------TCCCT-TSBGGGSCHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHc-----------CCCcC-CCChhhCCHHHHHHHHHHHHHH
Confidence 99999999987 99999988521 12245555555544 34444 5667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEEeCCEEE
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGKVI 672 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl~~G~Iv 672 (709)
++|++||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+..++..+|+..|+|-
T Consensus 150 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC---
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCccc
Confidence 9999999999999999999999999998875 479999999999998885555556678774
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=4.7e-47 Score=399.55 Aligned_cols=241 Identities=17% Similarity=0.194 Sum_probs=205.5
Q ss_pred HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEeEEEEe
Q 005205 389 ILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSY 468 (709)
Q Consensus 389 v~~g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y 468 (709)
...+..+-+.+.+|+.+..+ ..|+..++..+..++++..+.+|+.++++.+++..+... +.+...+.|+++||+|+|
T Consensus 35 ~a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~i~~~~vs~~y 111 (305)
T 2v9p_A 35 YALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEG--SWKSILTFFNYQNIELIT 111 (305)
T ss_dssp HHHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSC--CTHHHHHHHHHTTCCHHH
T ss_pred HHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--cccccCCeEEEEEEEEEc
Confidence 34566778899999988777 589999999999999999999999999987654322111 111112359999999999
Q ss_pred cCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchh
Q 005205 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDT 548 (709)
Q Consensus 469 ~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gT 548 (709)
+ .++|+++||+|++|+++|||||||||||||+++|+|+| +|+| +++|+|++++|++|
T Consensus 112 ~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~t 168 (305)
T 2v9p_A 112 F--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLAS 168 (305)
T ss_dssp H--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGG
T ss_pred C--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccccc
Confidence 7 68999999999999999999999999999999999999 8998 46789999999999
Q ss_pred HHH-HHHcCCCCCCHHHHHHHHHHHchHHHHHh-CCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 005205 549 IFH-NIRYGRLSATEEEVYDAARRAAIHDTIMN-FPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSAL 626 (709)
Q Consensus 549 Ire-NI~~g~~~~s~~ei~~A~~~a~l~~~I~~-Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaL 626 (709)
++| ||.|+ +++++ +++++|+. ||+||| |.+|||||||| |||++++|+||| ||+|
T Consensus 169 i~~~ni~~~-~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~L 224 (305)
T 2v9p_A 169 LADTRAALV-DDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNI 224 (305)
T ss_dssp GTTCSCEEE-EEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESS
T ss_pred HHHHhhccC-ccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCC
Confidence 998 99997 34553 45778888 999998 78999999999 999999999999 9999
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHHHHhhhc
Q 005205 627 DSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNN 696 (709)
Q Consensus 627 D~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~ 696 (709)
|+++|+.|.. +|||+++++.||+| ||++|+|++.|+|+|| ++.|+++|..|..
T Consensus 225 D~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~~~~ 277 (305)
T 2v9p_A 225 DVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGRLDL 277 (305)
T ss_dssp CSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTTTTC
T ss_pred CHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHHccc
Confidence 9999998862 39999999999999 9999999999999999 7899999987743
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.5e-37 Score=353.60 Aligned_cols=200 Identities=22% Similarity=0.285 Sum_probs=166.6
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +..|+|
T Consensus 287 ~l~~~~l~~~~~~--~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~ 351 (538)
T 1yqt_A 287 LVTYPRLVKDYGS--FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAY 351 (538)
T ss_dssp EEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEE
T ss_pred EEEEeeEEEEECC--EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEE
Confidence 5899999999953 4689999999999999999999999999999999999999999986 236999
Q ss_pred EcCCCCC-CchhHHHHHHcC-CCCC-CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 538 VPQDTVL-FNDTIFHNIRYG-RLSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 538 V~Q~~~L-F~gTIreNI~~g-~~~~-s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
|||++.+ ++.|+.||+... .+.. ..+.+.++++.. |+.........+||||||||++|||||+.+|
T Consensus 352 v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p 420 (538)
T 1yqt_A 352 KPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPL-----------GIIDLYDREVNELSGGELQRVAIAATLLRDA 420 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTT-----------TCGGGTTSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred EecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 9999976 677999998653 1111 122222222222 3333334455689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeC--CEEEEecChHHHhhc
Q 005205 615 PILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLEN--GKVIEQGSHDDLLTK 683 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~--G~Ive~Gth~eLl~~ 683 (709)
++|||||||++||..+.+.|.+.|+++. .++|+|+|||++..+.. ||+|+||++ |++++.|++++++..
T Consensus 421 ~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 421 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 9999999999999999999999999874 48999999999999874 999999996 889999999988753
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2e-37 Score=356.08 Aligned_cols=200 Identities=22% Similarity=0.296 Sum_probs=167.4
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +..|||
T Consensus 357 ~l~~~~l~~~~~~--~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~ 421 (607)
T 3bk7_A 357 LVEYPRLVKDYGS--FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAY 421 (607)
T ss_dssp EEEECCEEEECSS--CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEE
T ss_pred EEEEeceEEEecc--eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEE
Confidence 5899999999953 4689999999999999999999999999999999999999999986 247999
Q ss_pred EcCCCCC-CchhHHHHHHcC-CCCC-CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 538 VPQDTVL-FNDTIFHNIRYG-RLSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 538 V~Q~~~L-F~gTIreNI~~g-~~~~-s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
|||++.+ ++.|+.||+.+. .+.. ..+.+.++++..++. ......-.+||||||||++|||||+++|
T Consensus 422 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSGGe~QRv~iAraL~~~p 490 (607)
T 3bk7_A 422 KPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII-----------DLYDRNVEDLSGGELQRVAIAATLLRDA 490 (607)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-----------TTTTSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred EecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-----------hHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 9999876 678999998764 1111 123344444444332 2223334589999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeC--CEEEEecChHHHhhc
Q 005205 615 PILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLEN--GKVIEQGSHDDLLTK 683 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~--G~Ive~Gth~eLl~~ 683 (709)
++||||||||+||+.+...+.+.|+++. .++|+|+|||++..+.. ||+|++|++ |++++.|++++++..
T Consensus 491 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 491 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 9999999999999999999999999874 58999999999998875 999999996 889999999998763
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.5e-37 Score=348.85 Aligned_cols=200 Identities=22% Similarity=0.283 Sum_probs=167.6
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
.++++|++++|.+ ..|++.||+|++||++||+||||||||||+++|+|+++|++|+|.++| +.++|
T Consensus 269 ~l~~~~l~~~~~~--~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~~ 334 (538)
T 3ozx_A 269 KMKWTKIIKKLGD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILSY 334 (538)
T ss_dssp EEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEEE
T ss_pred eEEEcceEEEECC--EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeEe
Confidence 5899999999954 568888999999999999999999999999999999999999999876 36899
Q ss_pred EcCCCCC-CchhHHHHHHcCCCCC---CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 538 VPQDTVL-FNDTIFHNIRYGRLSA---TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 538 V~Q~~~L-F~gTIreNI~~g~~~~---s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
+||++.. |..|++||+.+..... ..+.+.++++..++.+ .......+||||||||++|||||+++
T Consensus 335 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGq~QRv~iAraL~~~ 403 (538)
T 3ozx_A 335 KPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHR-----------LLESNVNDLSGGELQKLYIAATLAKE 403 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGG-----------CTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred echhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHH-----------HhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999875 5789999998753221 2233444555444432 23344568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeC--CEEEEecChHHHhh
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLEN--GKVIEQGSHDDLLT 682 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~--G~Ive~Gth~eLl~ 682 (709)
|+||||||||++||+.+...|.+.|+++. .++|+|+|||+++.+.. ||||+||++ |++...|++.++..
T Consensus 404 p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 404 ADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 99999999999999999999999999875 47999999999999875 999999986 67777788777654
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.4e-37 Score=365.50 Aligned_cols=204 Identities=22% Similarity=0.369 Sum_probs=157.3
Q ss_pred eEEEEeEEEEecC-CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 458 ~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
-|+++||+|+|++ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|. ..|+
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 4999999999975 368999999999999999999999999999999999999999999999872 1488
Q ss_pred EEcCCCCC-----CchhHHHHHHcC-------------------------------------------------------
Q 005205 537 VVPQDTVL-----FNDTIFHNIRYG------------------------------------------------------- 556 (709)
Q Consensus 537 ~V~Q~~~L-----F~gTIreNI~~g------------------------------------------------------- 556 (709)
||+|++.. ++.|+++|+.+.
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 88887632 234666666431
Q ss_pred -----------CC---CC--------CHHHHHH-------------HHH--------HHchHHHHHhCCCCccccc--cC
Q 005205 557 -----------RL---SA--------TEEEVYD-------------AAR--------RAAIHDTIMNFPAKYSTVV--GE 591 (709)
Q Consensus 557 -----------~~---~~--------s~~ei~~-------------A~~--------~a~l~~~I~~Lp~G~dT~v--Ge 591 (709)
.+ .. ..+++.+ ++. ...+.+.++.+ |++... ..
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~~ 897 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSHS 897 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHHS
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcCC
Confidence 00 00 0000000 000 11233444444 454432 34
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hcCeEEEEeCCE
Q 005205 592 RGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGK 670 (709)
Q Consensus 592 ~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~aD~Iivl~~G~ 670 (709)
...+||||||||++|||||+.+|+||||||||++||+++...+.+.|+++ ++|+|+|||+++.+. .||+|++|++|+
T Consensus 898 ~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G~ 975 (986)
T 2iw3_A 898 RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDGR 975 (986)
T ss_dssp CGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTTB
T ss_pred CccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 56789999999999999999999999999999999999999999999875 579999999999886 599999999999
Q ss_pred EEEecC
Q 005205 671 VIEQGS 676 (709)
Q Consensus 671 Ive~Gt 676 (709)
|++.|+
T Consensus 976 Iv~~G~ 981 (986)
T 2iw3_A 976 MTPSGH 981 (986)
T ss_dssp CCC---
T ss_pred EEEeCC
Confidence 998775
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-36 Score=342.82 Aligned_cols=200 Identities=26% Similarity=0.352 Sum_probs=166.7
Q ss_pred EEeEEEEecCCcccceeeeeEeeCC-----cEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 461 FDNVHFSYLTERKILDGVSFVVPAG-----KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 461 f~nVsF~Y~~~~~vL~~isl~I~~G-----e~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
.++++|+|++..++++|+||++++| |++||+||||||||||+++|+|+.+|++|+. +. +..+
T Consensus 349 ~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 349 SASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred ccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 3678999986667899999999999 7899999999999999999999999999962 21 3469
Q ss_pred EEEcCCCC-CCchhHHHHHHcCCC--CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 005205 536 GVVPQDTV-LFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (709)
Q Consensus 536 ~~V~Q~~~-LF~gTIreNI~~g~~--~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~ 612 (709)
+|+||++. .|+.|++||+..... ....+...++++..++.+. ....-..||||||||++|||||+.
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI-----------IDQEVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT-----------SSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHHHh
Confidence 99999965 578899999864321 1234445555555554322 223346899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeC--CEEEEecChHHHhhcc
Q 005205 613 APPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLEN--GKVIEQGSHDDLLTKA 684 (709)
Q Consensus 613 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~--G~Ive~Gth~eLl~~~ 684 (709)
+|+||||||||++||+.+...|.+.|+++. .++|+|+|||++..+.. ||||+||++ |+++..|+++|++...
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~ 561 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGC 561 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhhh
Confidence 999999999999999999999999998874 48999999999998875 999999997 9999999999999753
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.8e-36 Score=352.13 Aligned_cols=208 Identities=25% Similarity=0.384 Sum_probs=154.9
Q ss_pred CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHh---------------------cCCCCCCCEEEECCEeCCCCCHH
Q 005205 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF---------------------RSFDTHSGSIRIDGQDICEVTLE 529 (709)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~---------------------rly~p~~G~I~idG~di~~~~~~ 529 (709)
..++|+||||+|++||++||+||||||||||+++|+ +-+.+.+|.|.++|.++...+..
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTC
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCc
Confidence 357899999999999999999999999999998764 12334567899999988765422
Q ss_pred Hhhc-----------------------------------------ceEEEcCCCCCC-----------------------
Q 005205 530 SLRK-----------------------------------------SIGVVPQDTVLF----------------------- 545 (709)
Q Consensus 530 ~lR~-----------------------------------------~i~~V~Q~~~LF----------------------- 545 (709)
..+. ..|++.|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 1111 123344433222
Q ss_pred ----------chhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 546 ----------NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 546 ----------~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
.-|++||+.+.......++..+ .+..+ |+. ...+....+||||||||++|||||+.+|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p 562 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASIPKIKRKLE---------TLYDV--GLGYMKLGQPATTLSGGEAQRVKLAAELHRRS 562 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHH---------HHHHT--TCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHH---------HHHHc--CCchhhccCCchhCCHHHHHHHHHHHHHhhCC
Confidence 3589999988643211122222 23333 222 2345677899999999999999999887
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEE------eCCEEEEecChHHHhhcc
Q 005205 615 ---PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL------ENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 615 ---~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl------~~G~Ive~Gth~eLl~~~ 684 (709)
+|||||||||+||+.+.+.|.+.|+++. +++|+|+|||+++.++.||+|+|| ++|+|++.|+++|+.+..
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~ 642 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVK 642 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCC
Confidence 4999999999999999999999998875 489999999999999999999999 899999999999998765
Q ss_pred cHHHH
Q 005205 685 GRYAQ 689 (709)
Q Consensus 685 g~Y~~ 689 (709)
..|..
T Consensus 643 ~~~~~ 647 (670)
T 3ux8_A 643 ESHTG 647 (670)
T ss_dssp TCHHH
T ss_pred ccHHH
Confidence 44433
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.6e-36 Score=346.90 Aligned_cols=197 Identities=21% Similarity=0.275 Sum_probs=159.0
Q ss_pred eEEE--------EeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEE---------EECC
Q 005205 458 SIQF--------DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI---------RIDG 520 (709)
Q Consensus 458 ~I~f--------~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I---------~idG 520 (709)
.|++ +||+++|++...+|+|+| +|++||++||+||||||||||+++|+|+++|++|++ .++|
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 3788 899999965335899999 999999999999999999999999999999999996 4567
Q ss_pred EeCCCCCHHH--hhcceEEEcCCCC----CCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCC
Q 005205 521 QDICEVTLES--LRKSIGVVPQDTV----LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGL 594 (709)
Q Consensus 521 ~di~~~~~~~--lR~~i~~V~Q~~~----LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~ 594 (709)
.++.++.... .+..+++++|+.. ++.+|++||+.... ..+++.++++..++.+. .|.. -.
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~---~~~~~~~~L~~lgL~~~-------~~~~----~~ 227 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD---EVGKFEEVVKELELENV-------LDRE----LH 227 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC---CSSCHHHHHHHTTCTTG-------GGSB----GG
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH---HHHHHHHHHHHcCCCch-------hCCC----hh
Confidence 6554321111 2346889998743 45569999997632 13456666666655332 2333 34
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCC
Q 005205 595 KLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENG 669 (709)
Q Consensus 595 ~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G 669 (709)
+||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++. +++|+|+|+|+++.+.. ||+|++|+++
T Consensus 228 ~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 799999999999999999999999999999999999999999998875 48999999999998865 8999999864
No 56
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.6e-35 Score=345.91 Aligned_cols=219 Identities=25% Similarity=0.417 Sum_probs=167.1
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHH---------HHHhcCCCC------CCC------E
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL---------RLLFRSFDT------HSG------S 515 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~---------~LL~rly~p------~~G------~ 515 (709)
..+++++++ .+.|+||||+|++|+++||+|+||||||||+ +++.+...+ .+| .
T Consensus 588 ~~l~v~~~~------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~ 661 (916)
T 3pih_A 588 ASLKIKGVR------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKM 661 (916)
T ss_dssp SEEEEEEEC------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEE
T ss_pred ceEEEeeec------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccce
Confidence 346666553 3579999999999999999999999999997 444444433 333 3
Q ss_pred EEECCEeCCCCCH----------HHhh-------------------------------cceEEEcCCCCCCc--------
Q 005205 516 IRIDGQDICEVTL----------ESLR-------------------------------KSIGVVPQDTVLFN-------- 546 (709)
Q Consensus 516 I~idG~di~~~~~----------~~lR-------------------------------~~i~~V~Q~~~LF~-------- 546 (709)
|.+|+.++..... +.+| +..|+++|+..++.
T Consensus 662 i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~ 741 (916)
T 3pih_A 662 IAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDV 741 (916)
T ss_dssp EEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTT
T ss_pred EeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeeccc
Confidence 6666666543221 1111 23577888776553
Q ss_pred -------------------------hhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHH
Q 005205 547 -------------------------DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEK 601 (709)
Q Consensus 547 -------------------------gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQr 601 (709)
.|++||+.|.......++..++++..++ || ..+|+.+.+||||||
T Consensus 742 c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LSGGEr 811 (916)
T 3pih_A 742 CKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGL---------GY-VKLGQPATTLSGGEA 811 (916)
T ss_dssp TTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTG---------GG-SBTTCCSTTCCHHHH
T ss_pred ccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCC---------ch-hhccCCccCCCHHHH
Confidence 4778888776543223334444444433 33 347889999999999
Q ss_pred HHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEE------eCCEE
Q 005205 602 QRVALARAFLKAP---PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL------ENGKV 671 (709)
Q Consensus 602 QRiaIARAll~~p---~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl------~~G~I 671 (709)
|||+|||||+++| +|||||||||+||+.+++.|++.|+++. +|+|+|+|+|+++.++.||+|++| ++|+|
T Consensus 812 QRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~I 891 (916)
T 3pih_A 812 QRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYI 891 (916)
T ss_dssp HHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEE
T ss_pred HHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEE
Confidence 9999999999876 6999999999999999999999999875 589999999999999999999999 89999
Q ss_pred EEecChHHHhhcccHHHHHH
Q 005205 672 IEQGSHDDLLTKAGRYAQLW 691 (709)
Q Consensus 672 ve~Gth~eLl~~~g~Y~~l~ 691 (709)
|++|+|+|+++..+.|...+
T Consensus 892 v~~Gtpeel~~~~~syt~~~ 911 (916)
T 3pih_A 892 VATGTPEEIAKNPHSYTGRF 911 (916)
T ss_dssp EEEESHHHHHSCTTCHHHHH
T ss_pred EEEcCHHHHHhCCchHHHHH
Confidence 99999999999877775544
No 57
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.9e-36 Score=341.97 Aligned_cols=196 Identities=23% Similarity=0.294 Sum_probs=154.9
Q ss_pred EEE-EeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEE---------EECCEeCCCCCH
Q 005205 459 IQF-DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI---------RIDGQDICEVTL 528 (709)
Q Consensus 459 I~f-~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I---------~idG~di~~~~~ 528 (709)
.++ +||+++|++..++|+|+| +|++||++|||||||||||||+|+|+|+++|++|++ .++|.++.+...
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 599999965336899999 999999999999999999999999999999999996 456665543211
Q ss_pred HH--hhcceEEEcCCCCCC----chhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHH
Q 005205 529 ES--LRKSIGVVPQDTVLF----NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (709)
Q Consensus 529 ~~--lR~~i~~V~Q~~~LF----~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQ 602 (709)
.. .+..+++++|+..++ .+|++||+.... ..+++.++++..++.+ -.+.. -.+|||||||
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---~~~~~~~~l~~lgl~~-------~~~~~----~~~LSgGekQ 165 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---ETGKLEEVVKALELEN-------VLERE----IQHLSGGELQ 165 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---SSSCHHHHHHHTTCTT-------TTTSB----GGGCCHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---HHHHHHHHHHHcCCCh-------hhhCC----hhhCCHHHHH
Confidence 11 234689999976543 359999986532 1345666666665532 12333 3579999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh-cCeEEEEeCC
Q 005205 603 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENG 669 (709)
Q Consensus 603 RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~-aD~Iivl~~G 669 (709)
|++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|
T Consensus 166 Rv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 166 RVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999999999998874 48999999999998875 9999999864
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.7e-34 Score=338.71 Aligned_cols=198 Identities=27% Similarity=0.350 Sum_probs=164.8
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
..|...|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+| |+| +|.+... +..++
T Consensus 434 ~~L~~~~ls~~yg-~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~~ 498 (986)
T 2iw3_A 434 EDLCNCEFSLAYG-AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRTV 498 (986)
T ss_dssp CEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCEE
T ss_pred ceeEEeeEEEEEC-CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeEE
Confidence 4688889999995 4689999999999999999999999999999999996 654 5654321 12478
Q ss_pred EEcCCC-CC-CchhHHHHHHcCCCCCCHHHHHHHHHHHch-HHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 537 VVPQDT-VL-FNDTIFHNIRYGRLSATEEEVYDAARRAAI-HDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 537 ~V~Q~~-~L-F~gTIreNI~~g~~~~s~~ei~~A~~~a~l-~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
|++|++ .+ ...|+.||+.+..... ++++.++++..++ .+...+ ++ ..||||||||++|||||+.+
T Consensus 499 ~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~-------~~----~~LSGGqkQRvaLArAL~~~ 566 (986)
T 2iw3_A 499 YVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAM-------PI----SALSGGWKMKLALARAVLRN 566 (986)
T ss_dssp ETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHS-------BG----GGCCHHHHHHHHHHHHHHTT
T ss_pred EEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcC-------Cc----ccCCHHHHHHHHHHHHHhcC
Confidence 999985 34 4569999998621112 6778888888777 333322 22 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCEEE-EecChHHHhhc
Q 005205 614 PPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI-EQGSHDDLLTK 683 (709)
Q Consensus 614 p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~Iv-e~Gth~eLl~~ 683 (709)
|+|||||||||+||+.+.+.+.+.|++ .++|+|+|||++..+.. ||+|++|++|+++ ..|+++|+++.
T Consensus 567 P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~ 636 (986)
T 2iw3_A 567 ADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKK 636 (986)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhh
Confidence 999999999999999999999999988 68999999999999875 9999999999997 58999998754
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=6.6e-35 Score=341.62 Aligned_cols=206 Identities=23% Similarity=0.356 Sum_probs=139.8
Q ss_pred CcccceeeeeEeeCCcEEEEEcCCCccHHHHH---------------------HHHhcCCCCC-------CCEEEECCEe
Q 005205 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL---------------------RLLFRSFDTH-------SGSIRIDGQD 522 (709)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~---------------------~LL~rly~p~-------~G~I~idG~d 522 (709)
..++|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45799999999999999999999999999998 8999999999 5566677655
Q ss_pred CCCCCHHHhhcceEEEcCCCCCC--------------------chhHHHHHHcCCC-CCCH--HH-----HHHHHHHHch
Q 005205 523 ICEVTLESLRKSIGVVPQDTVLF--------------------NDTIFHNIRYGRL-SATE--EE-----VYDAARRAAI 574 (709)
Q Consensus 523 i~~~~~~~lR~~i~~V~Q~~~LF--------------------~gTIreNI~~g~~-~~s~--~e-----i~~A~~~a~l 574 (709)
+.. ..|+.+++|+|.+.++ ..|++||+.++.. ...+ .+ +.++.+..
T Consensus 110 ~~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 183 (670)
T 3ux8_A 110 TSR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-- 183 (670)
T ss_dssp ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHH--
T ss_pred hhc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH--
Confidence 443 2355677777765443 4589999987531 1111 11 11111222
Q ss_pred HHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEE
Q 005205 575 HDTIMNFPAKYSTV-VGERGLKLSGGEKQRVALARAFLKAPP--ILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFI 650 (709)
Q Consensus 575 ~~~I~~Lp~G~dT~-vGe~G~~LSGGQrQRiaIARAll~~p~--ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvI 650 (709)
+.++.+ |++.. .......||||||||++|||||+.+|+ +||||||||+||+.+...|.+.|+++. +++|+|+|
T Consensus 184 -~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~v 260 (670)
T 3ux8_A 184 -GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVV 260 (670)
T ss_dssp -HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEE
T ss_pred -HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 223332 22211 223345799999999999999999998 999999999999999999999998874 57999999
Q ss_pred ecCchHHhhcCeEEEE------eCCEEEEecChHHHhhccc
Q 005205 651 AHRLTTAMQCDEIIVL------ENGKVIEQGSHDDLLTKAG 685 (709)
Q Consensus 651 aHRlsti~~aD~Iivl------~~G~Ive~Gth~eLl~~~g 685 (709)
||+++.+..||+|++| ++|+|++.|+++|+.+...
T Consensus 261 tHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 261 EHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp CCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred eCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 9999999999999999 8999999999999987654
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=324.21 Aligned_cols=196 Identities=21% Similarity=0.289 Sum_probs=153.3
Q ss_pred eEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEE-----------EECCEeCCCCCHHHh
Q 005205 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-----------RIDGQDICEVTLESL 531 (709)
Q Consensus 463 nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I-----------~idG~di~~~~~~~l 531 (709)
|++++|.+....|++++ ++++||++||+||||||||||+++|+|+++|++|+| .++|.++.++....+
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 46889976667788887 699999999999999999999999999999999998 445554444434444
Q ss_pred hcceE--EEcCCCCCC----c---hhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHH
Q 005205 532 RKSIG--VVPQDTVLF----N---DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQ 602 (709)
Q Consensus 532 R~~i~--~V~Q~~~LF----~---gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQ 602 (709)
++.+. +.+|....+ . .++.+++..... ..++++.++++..++.+.. ...-.+|||||||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGe~Q 228 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME-KSPEDVKRYIKILQLENVL-----------KRDIEKLSGGELQ 228 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCC-SCHHHHHHHHHHHTCTGGG-----------GSCTTTCCHHHHH
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhh-hHHHHHHHHHHHcCCcchh-----------CCChHHCCHHHHH
Confidence 44443 334432211 1 267777765432 3456777777777654432 2334689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchHHhh-cCeEEEEeCCEE
Q 005205 603 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQ-CDEIIVLENGKV 671 (709)
Q Consensus 603 RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRlsti~~-aD~Iivl~~G~I 671 (709)
|++|||||+.+|+|||||||||+||+.+...+.+.|+++.+ ++|+|+|+|+++.+.. ||+|+||++|..
T Consensus 229 rv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 229 RFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999998854 7999999999998876 999999998653
No 61
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.98 E-value=2.6e-32 Score=302.00 Aligned_cols=209 Identities=19% Similarity=0.274 Sum_probs=162.3
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC---------------------------
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--------------------------- 510 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~--------------------------- 510 (709)
.|+++|+ .+++++||++++| +++|||+||||||||+++|.++..
T Consensus 42 ~L~i~nf--------~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~ 112 (415)
T 4aby_A 42 RLEIRNL--------ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDES 112 (415)
T ss_dssp EEEEEEE--------TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC------
T ss_pred eehhccc--------cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCC
Confidence 4666653 4789999999999 999999999999999999966553
Q ss_pred -----------CCCCEEEECCEeCCCCCHHHhhcc-eEEEcCCCCCCchhHHHHHHcCCCCCCH----------------
Q 005205 511 -----------THSGSIRIDGQDICEVTLESLRKS-IGVVPQDTVLFNDTIFHNIRYGRLSATE---------------- 562 (709)
Q Consensus 511 -----------p~~G~I~idG~di~~~~~~~lR~~-i~~V~Q~~~LF~gTIreNI~~g~~~~s~---------------- 562 (709)
+.+|++++||.+++..++.++++. +++++|++.++-.+-.++..+-+.....
T Consensus 113 ~~~~l~r~~~~~~~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~ 192 (415)
T 4aby_A 113 EADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAV 192 (415)
T ss_dssp --CEEEEEEETTSCEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEecCCceEEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 458899999999987778888877 8999999998877776666554322211
Q ss_pred ----------------------------HHHHHHHH-------------HHchHHHHHhC--CC----------------
Q 005205 563 ----------------------------EEVYDAAR-------------RAAIHDTIMNF--PA---------------- 583 (709)
Q Consensus 563 ----------------------------~ei~~A~~-------------~a~l~~~I~~L--p~---------------- 583 (709)
+++.+.+. ...+.+.+..+ |+
T Consensus 193 ~~~~~l~~~~~~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 272 (415)
T 4aby_A 193 SRLERLQASESSKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAY 272 (415)
T ss_dssp HHHHHC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETT
T ss_pred HHHHHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCC
Confidence 00000000 01122223332 21
Q ss_pred Cccc---cccCCCCC--------CChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEE
Q 005205 584 KYST---VVGERGLK--------LSGGEKQRVALARAFLKAP--PILLCDEATSALDSTTEAEILNALKSLANNRTSIFI 650 (709)
Q Consensus 584 G~dT---~vGe~G~~--------LSGGQrQRiaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvI 650 (709)
|++. .++.++.. ||||||||++|||+|+.+| +|||||||||+||+.+.+.|.+.|+++.+++|+|+|
T Consensus 273 g~~~~~~~~~~~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~i 352 (415)
T 4aby_A 273 GLSDVLLRFSANPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVV 352 (415)
T ss_dssp EEEEEEEEEESSSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCceEEEEEEcCCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3333 34555544 8999999999999999999 999999999999999999999999998889999999
Q ss_pred ecCchHHhhcCeEEEE----eCCEEEEec
Q 005205 651 AHRLTTAMQCDEIIVL----ENGKVIEQG 675 (709)
Q Consensus 651 aHRlsti~~aD~Iivl----~~G~Ive~G 675 (709)
||+++.+..||+|+|| ++|+++...
T Consensus 353 tH~~~~~~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 353 THLAQIAARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp CSCHHHHTTCSEEEEEEEEEETTEEEEEE
T ss_pred eCcHHHHhhcCeEEEEEEeccCCceEEEE
Confidence 9999999999999999 999998654
No 62
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.98 E-value=2.5e-33 Score=318.09 Aligned_cols=193 Identities=20% Similarity=0.271 Sum_probs=152.1
Q ss_pred eEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEE-----------EECCEeCCCCCHHHh
Q 005205 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-----------RIDGQDICEVTLESL 531 (709)
Q Consensus 463 nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I-----------~idG~di~~~~~~~l 531 (709)
+++.+|.++..-|.++.. .++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+.....
T Consensus 4 ~~~~~~~~~~f~l~~l~~-~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 82 (538)
T 3ozx_A 4 EVIHRYKVNGFKLFGLPT-PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82 (538)
T ss_dssp CEEEESSTTSCEEECCCC-CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred CCceecCCCceeecCCCC-CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence 567789765555555443 56999999999999999999999999999999999 677876644322222
Q ss_pred ------hcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 005205 532 ------RKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVA 605 (709)
Q Consensus 532 ------R~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRia 605 (709)
+..+.+++|.+.++.+|+++++..... .+++.++++..++.+. .|..+ .+||||||||++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~---~~~~~~~l~~l~l~~~-------~~~~~----~~LSgGe~Qrv~ 148 (538)
T 3ozx_A 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKIDE---RGKKDEVKELLNMTNL-------WNKDA----NILSGGGLQRLL 148 (538)
T ss_dssp TTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC---SSCHHHHHHHTTCGGG-------TTSBG----GGCCHHHHHHHH
T ss_pred hcccchhhccchhhhhhhhccCcHHHHhhcchh---HHHHHHHHHHcCCchh-------hcCCh----hhCCHHHHHHHH
Confidence 223455566677788999998864322 3345566666665332 23333 479999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhh-cCeEEEEeCCE
Q 005205 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGK 670 (709)
Q Consensus 606 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~-aD~Iivl~~G~ 670 (709)
|||||+.+|+|||||||||+||+.+...+.+.|+++.+++|+|+|+|+++.+.. ||+|+||++|.
T Consensus 149 iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 149 VAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999999999999999999999999999889999999999998765 99999998754
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.98 E-value=7.2e-33 Score=325.96 Aligned_cols=217 Identities=24% Similarity=0.404 Sum_probs=161.7
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHH-HhcCC-------CC-----------------
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRL-LFRSF-------DT----------------- 511 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~L-L~rly-------~p----------------- 511 (709)
..|+++|+++ .+|+||||+|++|+++||+|+||||||||++. |+|+. .|
T Consensus 501 ~~L~v~~l~~------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~ 574 (842)
T 2vf7_A 501 GWLELNGVTR------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA 574 (842)
T ss_dssp CEEEEEEEEE------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred ceEEEEeeee------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 4699999986 26999999999999999999999999999996 65442 22
Q ss_pred -CCC-------EEEECCEeCCCCCH----------HHhhcceEEEcC-------------------------------CC
Q 005205 512 -HSG-------SIRIDGQDICEVTL----------ESLRKSIGVVPQ-------------------------------DT 542 (709)
Q Consensus 512 -~~G-------~I~idG~di~~~~~----------~~lR~~i~~V~Q-------------------------------~~ 542 (709)
.+| .|.+||.++...+. +.+|+.++++|+ |-
T Consensus 575 ~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~ 654 (842)
T 2vf7_A 575 RLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVEL 654 (842)
T ss_dssp EEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETT
T ss_pred cccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhh
Confidence 467 78999988864432 344443333322 11
Q ss_pred CCC-------------------------chhHHHHHHcCCCC-----CCHHHHHHHHHHHchHHHHHhCCCCccc-cccC
Q 005205 543 VLF-------------------------NDTIFHNIRYGRLS-----ATEEEVYDAARRAAIHDTIMNFPAKYST-VVGE 591 (709)
Q Consensus 543 ~LF-------------------------~gTIreNI~~g~~~-----~s~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe 591 (709)
.++ .-||.||+.+...+ ....++ ..+.+.++.+ |+.. .++.
T Consensus 655 ~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~------~~~~~~L~~~--gL~~~~l~~ 726 (842)
T 2vf7_A 655 LFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAI------FRALDTLREV--GLGYLRLGQ 726 (842)
T ss_dssp CSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHH------HHHHHHHHHT--TCTTSBTTC
T ss_pred hcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHH------HHHHHHHHHc--CCCcccccC
Confidence 111 12566665432100 001111 1234455555 3433 3577
Q ss_pred CCCCCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEE-
Q 005205 592 RGLKLSGGEKQRVALARAFLKA---PPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL- 666 (709)
Q Consensus 592 ~G~~LSGGQrQRiaIARAll~~---p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl- 666 (709)
....||||||||++|||||+++ |+||||||||++||+.+.+.|.+.|+++. +|+|+|+|+|++..++.||+|++|
T Consensus 727 ~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~ 806 (842)
T 2vf7_A 727 PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIG 806 (842)
T ss_dssp CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEC
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEC
Confidence 7889999999999999999997 69999999999999999999999998874 689999999999999999999999
Q ss_pred -----eCCEEEEecChHHHhhcccHH
Q 005205 667 -----ENGKVIEQGSHDDLLTKAGRY 687 (709)
Q Consensus 667 -----~~G~Ive~Gth~eLl~~~g~Y 687 (709)
++|+|++.|+++|+++....|
T Consensus 807 p~~g~~~G~Iv~~g~~~el~~~~~~~ 832 (842)
T 2vf7_A 807 PGAGEDGGRLVAQGTPAEVAQAAGSV 832 (842)
T ss_dssp SSSGGGCCSEEEEECHHHHTTCTTCS
T ss_pred CCCCCCCCEEEEEcCHHHHHhCchhH
Confidence 699999999999998765433
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.98 E-value=3.6e-32 Score=320.00 Aligned_cols=217 Identities=26% Similarity=0.382 Sum_probs=163.7
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHh-c----CC---CCCCC-------------EE
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF-R----SF---DTHSG-------------SI 516 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~-r----ly---~p~~G-------------~I 516 (709)
.|+++|++. .+|+||||+|++|+++||+|+||||||||++.|+ | .+ .|..| .|
T Consensus 629 ~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I 702 (972)
T 2r6f_A 629 WLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVI 702 (972)
T ss_dssp EEEEEEECS------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEE
T ss_pred EEEEecCcc------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEE
Confidence 589999863 3799999999999999999999999999999854 2 11 12333 48
Q ss_pred EECCEeCCCCC---HH-------Hhh---------cceEEEcCCCCC---------------------C-----------
Q 005205 517 RIDGQDICEVT---LE-------SLR---------KSIGVVPQDTVL---------------------F----------- 545 (709)
Q Consensus 517 ~idG~di~~~~---~~-------~lR---------~~i~~V~Q~~~L---------------------F----------- 545 (709)
.+||.++..-+ +. ..| +.+||++|...+ |
T Consensus 703 ~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c 782 (972)
T 2r6f_A 703 DIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVC 782 (972)
T ss_dssp EECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTT
T ss_pred EEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccccc
Confidence 89998875322 11 122 346888885321 0
Q ss_pred -----------------------chhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccc-cccCCCCCCChHHH
Q 005205 546 -----------------------NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGEK 601 (709)
Q Consensus 546 -----------------------~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQr 601 (709)
+-|+.||+.+... . .++.+ ..+.++.+ |++. .++....+||||||
T Consensus 783 ~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~-~--~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSGGek 851 (972)
T 2r6f_A 783 HGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS-I--PKIKR------KLETLYDV--GLGYMKLGQPATTLSGGEA 851 (972)
T ss_dssp TTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS-C--HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCHHHH
T ss_pred ccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc-c--hhHHH------HHHHHHHc--CCCcccccCchhhCCHHHH
Confidence 1256666665432 1 11111 12345554 4554 56777889999999
Q ss_pred HHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEE------eCCEE
Q 005205 602 QRVALARAFLKAP---PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL------ENGKV 671 (709)
Q Consensus 602 QRiaIARAll~~p---~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl------~~G~I 671 (709)
||++|||||+++| +||||||||++||+.+.+.+.+.|+++. +|+|+|+|+|++..++.||+|++| ++|+|
T Consensus 852 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~I 931 (972)
T 2r6f_A 852 QRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQI 931 (972)
T ss_dssp HHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSE
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEE
Confidence 9999999999875 9999999999999999999999998875 589999999999999999999999 79999
Q ss_pred EEecChHHHhhcccHHHHHH
Q 005205 672 IEQGSHDDLLTKAGRYAQLW 691 (709)
Q Consensus 672 ve~Gth~eLl~~~g~Y~~l~ 691 (709)
++.|+++|+.+....|...|
T Consensus 932 v~~g~~~el~~~~~~~t~~~ 951 (972)
T 2r6f_A 932 VAVGTPEEVAEVKESHTGRY 951 (972)
T ss_dssp EEEESHHHHHTCTTCHHHHH
T ss_pred EEecCHHHHHhCchhHHHHH
Confidence 99999999998655554443
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.2e-36 Score=333.69 Aligned_cols=200 Identities=17% Similarity=0.109 Sum_probs=160.6
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCC-E-EEECCEeCCCCCHHHhhcce
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-S-IRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G-~-I~idG~di~~~~~~~lR~~i 535 (709)
.|+++||+|+|+ ++||++++|++++|+||||||||||+|+|+|++.|++| + |++|| +.|+.+
T Consensus 118 mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg---------~~~~~i 181 (460)
T 2npi_A 118 MKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL---------DPQQPI 181 (460)
T ss_dssp HHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC---------CTTSCS
T ss_pred hhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC---------CccCCe
Confidence 578888888884 79999999999999999999999999999999999999 9 99998 247889
Q ss_pred EEEcCCCCCCc----hhHHHHHHcCCCC---C-CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 005205 536 GVVPQDTVLFN----DTIFHNIRYGRLS---A-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALA 607 (709)
Q Consensus 536 ~~V~Q~~~LF~----gTIreNI~~g~~~---~-s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIA 607 (709)
++|||++.+|. .|++||+ ++... . .++++.++++.. |++.... ..+||||||||++||
T Consensus 182 ~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrlalA 247 (460)
T 2npi_A 182 FTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLGQV 247 (460)
T ss_dssp SSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHHHH
T ss_pred eeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHHHH
Confidence 99999996554 4899999 76421 1 112222222222 4444432 679999999999999
Q ss_pred HH--hccCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch------HH-hhcCe-----EEEEe-
Q 005205 608 RA--FLKAPPI----LLCDE-ATSALDSTTEAEILNALKSLANNRTSIFIAHRLT------TA-MQCDE-----IIVLE- 667 (709)
Q Consensus 608 RA--ll~~p~I----LILDE-aTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRls------ti-~~aD~-----Iivl~- 667 (709)
|| |+.+|++ ||||| |||+||+. .+.|.+.++++ ++|+|+|+|+.+ .+ +.||+ |++|+
T Consensus 248 ra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k 324 (460)
T 2npi_A 248 VGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPK 324 (460)
T ss_dssp HHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECC
T ss_pred HHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeC
Confidence 99 9999999 99999 99999999 77777777764 789999999987 33 56999 99999
Q ss_pred CCEEEEecChHHHhhc-ccHHHHHH
Q 005205 668 NGKVIEQGSHDDLLTK-AGRYAQLW 691 (709)
Q Consensus 668 ~G~Ive~Gth~eLl~~-~g~Y~~l~ 691 (709)
+|+|+ .|+++++.+. ....++++
T Consensus 325 ~G~iv-~g~~~~~~~~~~~~i~~~f 348 (460)
T 2npi_A 325 LDGVS-AVDDVYKRSLQRTSIREYF 348 (460)
T ss_dssp CTTCC-CCCHHHHHHHHHHHHHHHH
T ss_pred CCcEE-ECCHHHHhhhhHHHHHHHh
Confidence 99999 9999998643 23344443
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=5.3e-31 Score=311.23 Aligned_cols=219 Identities=27% Similarity=0.389 Sum_probs=162.6
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHh-----cCCC---CCCCE-------------
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF-----RSFD---THSGS------------- 515 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~-----rly~---p~~G~------------- 515 (709)
..|+++|++. .+|+||||+|++|+++||+|+||||||||+++|+ +.+. +..|.
T Consensus 646 ~~L~v~~l~~------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 719 (993)
T 2ygr_A 646 RQLTVVGARE------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKL 719 (993)
T ss_dssp SEEEEEEECS------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEE
T ss_pred ceEEEecCcc------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceE
Confidence 3699999863 3799999999999999999999999999999853 2221 23443
Q ss_pred EEECCEeCCCCC---HH-------Hhh---------cceEEEcCCCCC---------------------C----------
Q 005205 516 IRIDGQDICEVT---LE-------SLR---------KSIGVVPQDTVL---------------------F---------- 545 (709)
Q Consensus 516 I~idG~di~~~~---~~-------~lR---------~~i~~V~Q~~~L---------------------F---------- 545 (709)
|.+|+.++...+ +. .+| +..+|++|...+ |
T Consensus 720 i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~ 799 (993)
T 2ygr_A 720 VRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEV 799 (993)
T ss_dssp ECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTT
T ss_pred EEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehh
Confidence 566666663221 11 122 346777775321 0
Q ss_pred ------------------------chhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccc-cccCCCCCCChHH
Q 005205 546 ------------------------NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGE 600 (709)
Q Consensus 546 ------------------------~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQ 600 (709)
+.|+.||+.+... . .++.+ ..+.+..+ |+.. .+++...+|||||
T Consensus 800 c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~-~--~~~~~------~~~~L~~l--gL~~~~l~~~~~~LSGGe 868 (993)
T 2ygr_A 800 CQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP-I--AGVHR------YLRTLVDV--GLGYVRLGQPAPTLSGGE 868 (993)
T ss_dssp TTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT-C--HHHHH------HHHHHHHT--TGGGSBTTCCGGGSCHHH
T ss_pred ccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc-c--hHHHH------HHHHHHHc--CCCcccccCccccCCHHH
Confidence 1245556655431 1 11111 12345554 4554 5678888999999
Q ss_pred HHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEE------eCCE
Q 005205 601 KQRVALARAFLKAP---PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL------ENGK 670 (709)
Q Consensus 601 rQRiaIARAll~~p---~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl------~~G~ 670 (709)
||||+|||||+++| +||||||||++||+.+.+.|.+.|+++. +|+|+|+|+|++..++.||+|++| ++|+
T Consensus 869 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G~ 948 (993)
T 2ygr_A 869 AQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGT 948 (993)
T ss_dssp HHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCSE
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCCE
Confidence 99999999999875 9999999999999999999999998874 589999999999999999999999 6899
Q ss_pred EEEecChHHHhhcccHHHHHHH
Q 005205 671 VIEQGSHDDLLTKAGRYAQLWG 692 (709)
Q Consensus 671 Ive~Gth~eLl~~~g~Y~~l~~ 692 (709)
|++.|+++|+.+....|...|-
T Consensus 949 Iv~~G~~~el~~~~~~~t~~~l 970 (993)
T 2ygr_A 949 VVAQGTPEDVAAVPASYTGKFL 970 (993)
T ss_dssp EEEEECHHHHHHCTTCHHHHHH
T ss_pred EEEecCHHHHHhCCHHHHHHHH
Confidence 9999999999986655655443
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=5.3e-30 Score=274.12 Aligned_cols=213 Identities=21% Similarity=0.224 Sum_probs=154.3
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC-----------------------------
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS----------------------------- 508 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl----------------------------- 508 (709)
.|+++| -.+|. +++++++.+| .++|+|+||||||||++.|..+
T Consensus 5 ~L~i~n-fr~~~------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~ 76 (322)
T 1e69_A 5 KLYLKG-FKSFG------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAG 76 (322)
T ss_dssp EEEEES-BTTBC------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCS
T ss_pred EEEEeC-ceeec------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCc
Confidence 577887 22342 2578889999 9999999999999999999843
Q ss_pred ---------------------CCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCC-chhHHHHHHcCCCCC------
Q 005205 509 ---------------------FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTIFHNIRYGRLSA------ 560 (709)
Q Consensus 509 ---------------------y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF-~gTIreNI~~g~~~~------ 560 (709)
+.+.+|.+++||.+++..+...+...+++.||+..++ .|+|.+|+... |..
T Consensus 77 ~~~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld 155 (322)
T 1e69_A 77 SAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESS 155 (322)
T ss_dssp EEEEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC-----------
T ss_pred eEEEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHH
Confidence 3445689999999987666777888899999998766 99999999753 210
Q ss_pred ----------CHHHHHHHHHHHc-------------hHHHHHhCCCCccccccC------CCCCCChHHHHHHHHHHHhc
Q 005205 561 ----------TEEEVYDAARRAA-------------IHDTIMNFPAKYSTVVGE------RGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 561 ----------s~~ei~~A~~~a~-------------l~~~I~~Lp~G~dT~vGe------~G~~LSGGQrQRiaIARAll 611 (709)
+.+++.+.....- ..+....++.|+++.+++ ....||||||||++|||||.
T Consensus 156 ~~~~~~~~~~~y~rv~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~ 235 (322)
T 1e69_A 156 KHPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFA 235 (322)
T ss_dssp -----------CHHHHHHHHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHH
Confidence 1111222211110 001123466688776543 34689999999999999996
Q ss_pred ----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeE--EEEeCCEE-EEecChHH
Q 005205 612 ----KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEI--IVLENGKV-IEQGSHDD 679 (709)
Q Consensus 612 ----~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~I--ivl~~G~I-ve~Gth~e 679 (709)
++|++||||||||+||+.+.+.+.+.|+++.+++|+|+|||+...+..||++ ++|++|+. +...+-+|
T Consensus 236 ~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 236 LMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp HTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred HhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 7899999999999999999999999999987789999999999989999987 88888864 33444444
No 68
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.96 E-value=6.6e-33 Score=297.00 Aligned_cols=206 Identities=12% Similarity=0.164 Sum_probs=156.7
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccccccCCCCCCCC-CCCCceEE---------E
Q 005205 393 EMTVGDLVMVNGLLFQLSLPLNFLGS-VYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPL-NLKGGSIQ---------F 461 (709)
Q Consensus 393 ~ltvG~l~a~~~~~~~l~~pl~~l~~-~~~~l~~~~~s~~rl~~~l~~~~~~~~~~~~~~~-~~~~g~I~---------f 461 (709)
.+|.|++.+++.++..+..| .+.. ....++.+..+.+|+.++++.+.. .+....... ....+.++ |
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~-~~~~~~~~ir~~~~~~i~l~~l~~~g~~ 151 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTV-NDETISISIRIPSKTTYPHSFFEEQGFY 151 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSS-STTCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCcc-CCCCceEEEeCCCCCCCCHHHHHhCCCc
Confidence 69999999998888776665 2332 222333344456677777653321 111000000 11123466 8
Q ss_pred EeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCC
Q 005205 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541 (709)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~ 541 (709)
+||+| | +++++++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++....+|+++++++|
T Consensus 152 ~~v~f-y---~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~g- 224 (330)
T 2pt7_A 152 NLLDN-K---EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFFG- 224 (330)
T ss_dssp TTSTT-H---HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEECB-
T ss_pred Cchhh-H---HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEeC-
Confidence 88888 8 579999999999999999999999999999999999999999999999975 4444456777887751
Q ss_pred CCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 005205 542 TVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDE 621 (709)
Q Consensus 542 ~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDE 621 (709)
|||+||++|||||.++|++|||||
T Consensus 225 --------------------------------------------------------gg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 225 --------------------------------------------------------GNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp --------------------------------------------------------TTBCHHHHHHHHTTSCCSEEEECC
T ss_pred --------------------------------------------------------CChhHHHHHHHHhhhCCCEEEEcC
Confidence 899999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCC-eEEEEecCchHHhhcCeEEEEeCCEE
Q 005205 622 ATSALDSTTEAEILNALKSLANNR-TSIFIAHRLTTAMQCDEIIVLENGKV 671 (709)
Q Consensus 622 aTSaLD~~tE~~I~~~L~~l~~~~-TvIvIaHRlsti~~aD~Iivl~~G~I 671 (709)
||+. .+.+.|+++..++ |+|+++|++++...||||++|++|+.
T Consensus 249 ~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 249 LRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp CCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred CChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 9992 2456666666665 79999999999999999999998863
No 69
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.95 E-value=1.2e-30 Score=261.25 Aligned_cols=160 Identities=17% Similarity=0.155 Sum_probs=105.5
Q ss_pred CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHH
Q 005205 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (709)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIr 550 (709)
++++|+|+ ++||++||+||||||||||+++|+|+ +|++|+|. +.++.. +...+|+.|+||||++ +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------H
Confidence 35789985 89999999999999999999999999 99999994 334331 2235688999999998 6
Q ss_pred HHH-HcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 005205 551 HNI-RYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDST 629 (709)
Q Consensus 551 eNI-~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~ 629 (709)
||+ .++.+. .+.+........+.+.++. |+ |||||++|||||+.+|+|||||||||+
T Consensus 77 enl~~~~~~~--~~~~~~~~~~~~~~~~l~~---gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~---- 134 (208)
T 3b85_A 77 EKIDPYLRPL--HDALRDMVEPEVIPKLMEA---GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT---- 134 (208)
T ss_dssp ---CTTTHHH--HHHHTTTSCTTHHHHHHHT---TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----
T ss_pred HHHHHHHHHH--HHHHHHhccHHHHHHHHHh---CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----
Confidence 676 443110 0000000001122233332 22 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEE
Q 005205 630 TEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKV 671 (709)
Q Consensus 630 tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~I 671 (709)
+.+.+.+.|+++.+++|+| |||+++.+. ++...++|..
T Consensus 135 ~~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 135 TPAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp CHHHHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred cHHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 8889999998875578998 999987654 4555666653
No 70
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.95 E-value=1.6e-31 Score=269.94 Aligned_cols=166 Identities=16% Similarity=0.196 Sum_probs=124.8
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHhhcceEEEcCCCCCCc-----
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIGVVPQDTVLFN----- 546 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~-~~lR~~i~~V~Q~~~LF~----- 546 (709)
.-|+||||+|++|+++|||||||||||||+++|+|++ | |+|.+ |+++...+. ...++.++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4699999999999999999999999999999999999 6 99999 887754432 345778999999986664
Q ss_pred ------hhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHH-----HHHhccCCC
Q 005205 547 ------DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL-----ARAFLKAPP 615 (709)
Q Consensus 547 ------gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaI-----ARAll~~p~ 615 (709)
+++.+| .+|.+ ++++.++++.. ....++ .+||||||||++| ||+++++|+
T Consensus 87 ~~~l~~~~~~~~-~~g~~---~~~i~~~l~~~------------~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGTL---KSEYDKAKEQN------------KICLFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEEE---HHHHHHHHHTT------------CEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCCc---HHHHHHHHhCC------------CcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 344455 44433 44555554432 222332 6899999999999 999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeC
Q 005205 616 ILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLEN 668 (709)
Q Consensus 616 ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~ 668 (709)
+++|||||+++|.++|+.|++.|.+..+++| ++| +..||.|+|+++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999999999999999998877888 788 688999998865
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.94 E-value=6.1e-28 Score=234.31 Aligned_cols=149 Identities=17% Similarity=0.256 Sum_probs=110.7
Q ss_pred eeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCC--CCchhHHHHHH
Q 005205 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV--LFNDTIFHNIR 554 (709)
Q Consensus 477 ~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~--LF~gTIreNI~ 554 (709)
|+||++++||.++|+||||||||||++++.+ |... ++.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 2222 2333444 67788762 33444333322
Q ss_pred cCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH---
Q 005205 555 YGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTE--- 631 (709)
Q Consensus 555 ~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE--- 631 (709)
. .+ ...+..|+.+.+... ...|||||||++||||+..+|++|+|||||++||+.++
T Consensus 64 ~------------~~--------~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y------------IV--------SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H------------HH--------HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H------------HH--------HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 11 112234677666554 34599999999999999999999999999999999955
Q ss_pred -------------HHHHHHHHHhc-CCCeEEEEecCchHHhhcCeE
Q 005205 632 -------------AEILNALKSLA-NNRTSIFIAHRLTTAMQCDEI 663 (709)
Q Consensus 632 -------------~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~I 663 (709)
+.+.+.|+++. +|.|+|+|+|+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 77777766553 589999999999999888775
No 72
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.93 E-value=4e-29 Score=276.81 Aligned_cols=194 Identities=13% Similarity=0.173 Sum_probs=160.9
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCE---eCCCCC-----H
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ---DICEVT-----L 528 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~---di~~~~-----~ 528 (709)
..++++||++.|+.+.++|+++ |+|++||+++|+||||||||||+++|+|+++|+.|.|.++|. ++.++. .
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 3589999999997557899999 999999999999999999999999999999999999999998 565432 4
Q ss_pred HHhhcceEEEcCC--CCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccc-cccCCCCCCChHHHHHHH
Q 005205 529 ESLRKSIGVVPQD--TVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGEKQRVA 605 (709)
Q Consensus 529 ~~lR~~i~~V~Q~--~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQrQRia 605 (709)
..+++.++||+|+ +....-|+.+|+.+. .|.... .|.+. .+-+...+||||| ||++
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~------ae~~~~--------------~~~~v~~~ld~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRI------AEDFRD--------------RGQHVLLIMDSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHH------HHHHHT--------------TTCEEEEEEECHHHHHHHH-HHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHH------HHHHHh--------------CCCCHHHHHHhHHHHHHHH-HHHH
Confidence 5688999999994 334567999998763 122110 11110 1113356899999 9999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-----CC-----eEEEEecCchHHhhcCeEEEEeCCEEEEec
Q 005205 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-----NR-----TSIFIAHRLTTAMQCDEIIVLENGKVIEQG 675 (709)
Q Consensus 606 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-----~~-----TvIvIaHRlsti~~aD~Iivl~~G~Ive~G 675 (709)
|| +++|++ |++||+.+...+.+.++++.+ |+ |++++||+++ ...||++++|++|+|++.|
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECH
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeC
Confidence 99 899998 999999999999999998865 53 9999999999 8889999999999999999
Q ss_pred ChHHHhh
Q 005205 676 SHDDLLT 682 (709)
Q Consensus 676 th~eLl~ 682 (709)
+++++..
T Consensus 338 ~~~~~~~ 344 (438)
T 2dpy_A 338 RLAEAGH 344 (438)
T ss_dssp HHHHTTC
T ss_pred CHHHccC
Confidence 9988854
No 73
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=1.1e-25 Score=244.39 Aligned_cols=82 Identities=27% Similarity=0.399 Sum_probs=76.0
Q ss_pred CCCCCChHHHHHHHHHHHhc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEE
Q 005205 592 RGLKLSGGEKQRVALARAFL------KAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEII 664 (709)
Q Consensus 592 ~G~~LSGGQrQRiaIARAll------~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Ii 664 (709)
...+||||||||++|||||. .+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.++.||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 44579999999999999999 7999999999999999999999999999875 5799999999999999999999
Q ss_pred EEeCCEEEE
Q 005205 665 VLENGKVIE 673 (709)
Q Consensus 665 vl~~G~Ive 673 (709)
+|++|+|++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999985
No 74
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.93 E-value=4.6e-28 Score=236.67 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=111.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHH
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY 566 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~ 566 (709)
+++|+||||||||||+++|+|++. |.++|.+.++......++.++|++|++ |..+|+ ++.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~-------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSK-------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEET--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhh--------
Confidence 689999999999999999999985 678887765544335678999999987 333343 1110
Q ss_pred HHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH-----hccCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q 005205 567 DAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA-----FLKAPPILLCDE--ATSALDSTTEAEILNALK 639 (709)
Q Consensus 567 ~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA-----ll~~p~ILILDE--aTSaLD~~tE~~I~~~L~ 639 (709)
..+ .+..+++.+.+||||||||++|||| ++.+|++||||| ||++||+.+.+.+.+.++
T Consensus 63 -------------~~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 63 -------------FFT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp -------------TCC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred -------------cCC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 001 1145777788999999999999996 999999999999 999999999999999987
Q ss_pred HhcCCCeEEEEec---CchHHhh-cCeEEEEeCCEEEE
Q 005205 640 SLANNRTSIFIAH---RLTTAMQ-CDEIIVLENGKVIE 673 (709)
Q Consensus 640 ~l~~~~TvIvIaH---Rlsti~~-aD~Iivl~~G~Ive 673 (709)
+ .+.|+|+++| +...+.. ||+ ++|+|++
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 6 4677999996 5555554 666 6677776
No 75
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.92 E-value=8.4e-29 Score=256.49 Aligned_cols=184 Identities=20% Similarity=0.185 Sum_probs=155.1
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-CCEEEECCEeCCCCCHHHhhcceEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQDICEVTLESLRKSIGV 537 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~-~G~I~idG~di~~~~~~~lR~~i~~ 537 (709)
++++|++|. ++|+++| +++|+.++|+||||||||||+++|+|+|+|+ +|+|.++|.|+..+. ++.+++
T Consensus 6 ~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~ 74 (261)
T 2eyu_A 6 PEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSI 74 (261)
T ss_dssp CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSE
T ss_pred CChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCccee
Confidence 456677653 5999999 9999999999999999999999999999998 999999999886553 455788
Q ss_pred EcC-----CCCCCchhHHHHHHcCCCCC-------CHHHHHHHHHHHch-----------------HHHH----------
Q 005205 538 VPQ-----DTVLFNDTIFHNIRYGRLSA-------TEEEVYDAARRAAI-----------------HDTI---------- 578 (709)
Q Consensus 538 V~Q-----~~~LF~gTIreNI~~g~~~~-------s~~ei~~A~~~a~l-----------------~~~I---------- 578 (709)
|+| ++..|..+|+.+++. +|+. +.+.++++++.+.. +..+
T Consensus 75 v~q~~~gl~~~~l~~~la~aL~~-~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~ 153 (261)
T 2eyu_A 75 VNQREVGEDTKSFADALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQ 153 (261)
T ss_dssp EEEEEBTTTBSCHHHHHHHHHHH-CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHH
T ss_pred eeHHHhCCCHHHHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccch
Confidence 899 777889999999987 5655 67777777665431 2221
Q ss_pred --HhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE--EEEeCCCCCCCHHH---------HHHHHHHHHHhcCCC
Q 005205 579 --MNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPI--LLCDEATSALDSTT---------EAEILNALKSLANNR 645 (709)
Q Consensus 579 --~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~I--LILDEaTSaLD~~t---------E~~I~~~L~~l~~~~ 645 (709)
..+|+++++.|++++..+||| ||+++||+++.||+| +|+||+||++|... |..++++++.+.+|+
T Consensus 154 ~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~ 231 (261)
T 2eyu_A 154 VRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGL 231 (261)
T ss_dssp HHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCC
Confidence 235678999999999999999 999999999999999 99999999999873 557889999999999
Q ss_pred eEEEEecCchH
Q 005205 646 TSIFIAHRLTT 656 (709)
Q Consensus 646 TvIvIaHRlst 656 (709)
|++.++||++.
T Consensus 232 t~~~~a~r~~~ 242 (261)
T 2eyu_A 232 ITLEDAMEASP 242 (261)
T ss_dssp SCHHHHHHHCS
T ss_pred CCHHHHHHHhC
Confidence 99999999973
No 76
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.91 E-value=3.6e-27 Score=258.11 Aligned_cols=168 Identities=16% Similarity=0.208 Sum_probs=134.9
Q ss_pred cccceeeeeEeeCCc--------------------EEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHh
Q 005205 472 RKILDGVSFVVPAGK--------------------SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL 531 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge--------------------~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~l 531 (709)
+.+|++|||+|++|+ .+||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 468999999999999 99999999999999999999999999999999998763
Q ss_pred hcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChH--HHHHHHHHHH
Q 005205 532 RKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG--EKQRVALARA 609 (709)
Q Consensus 532 R~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG--QrQRiaIARA 609 (709)
| .++++|++...+-|+.||+.++.+ ++.+.+.++..++.+ ++..+ . |||| ||||++||||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~---~~~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGST---NFPPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKA 170 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGS---SCCHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccch---HHHHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHH
Confidence 2 278999986557899999988754 234556666665432 23333 2 8999 9999999999
Q ss_pred hcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc------C----CCeEEEEecCchH--Hhh-cCeEE
Q 005205 610 FLK----------APPILLCDEATSALDSTTEAEILNALKSLA------N----NRTSIFIAHRLTT--AMQ-CDEII 664 (709)
Q Consensus 610 ll~----------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~------~----~~TvIvIaHRlst--i~~-aD~Ii 664 (709)
|.+ +|++++||||||+||+.+.+.+.+.|+++. . .+++++-||.++- ++. ||+|.
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999 999999999999999999999998887763 1 2567777998875 444 67763
No 77
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.90 E-value=6.4e-27 Score=248.39 Aligned_cols=178 Identities=16% Similarity=0.204 Sum_probs=130.9
Q ss_pred CceEEEEeEEEEecCCcccceeeeeE-----------------------eeCCcEEEEEcCCCccHHHHHHHHhcCCCCC
Q 005205 456 GGSIQFDNVHFSYLTERKILDGVSFV-----------------------VPAGKSVAIVGTSGSGKSTILRLLFRSFDTH 512 (709)
Q Consensus 456 ~g~I~f~nVsF~Y~~~~~vL~~isl~-----------------------I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~ 512 (709)
++.|+++||++.|. |+++++++. +++|+++||+||||||||||+++|+|+++|+
T Consensus 41 ~~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 41 GEQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp TCCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 45799999999994 677777764 8999999999999999999999999999998
Q ss_pred CCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCC-CCCCHHHHHHHHHHHchHHHHHhCCCCcc-cccc
Q 005205 513 SGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR-LSATEEEVYDAARRAAIHDTIMNFPAKYS-TVVG 590 (709)
Q Consensus 513 ~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~-~~~s~~ei~~A~~~a~l~~~I~~Lp~G~d-T~vG 590 (709)
.|. +++++|+||+++|..|++||+.+.. -+..+. .....+.++++.+..|+. ..+
T Consensus 118 ~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~-----~d~~~~~~~L~~l~~~~~~~~~- 174 (312)
T 3aez_A 118 DHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPES-----YNRRALMRFVTSVKSGSDYACA- 174 (312)
T ss_dssp TTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGG-----BCHHHHHHHHHHHHTTCSCEEE-
T ss_pred CCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChH-----HHHHHHHHHHHHhCCCcccCCc-
Confidence 773 5799999999999999999997532 111111 011223345555555554 443
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh--hcCeEEEEeC
Q 005205 591 ERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM--QCDEIIVLEN 668 (709)
Q Consensus 591 e~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~--~aD~Iivl~~ 668 (709)
..|||||+||+++|||++.+|+|||||||++.+|+.. ..+.++. + .+|+|.|..+... ..+|.+.+.+
T Consensus 175 ---~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 175 ---PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp ---EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred ---ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999999999999999998622 1233332 2 4577777765532 3455554544
Q ss_pred C
Q 005205 669 G 669 (709)
Q Consensus 669 G 669 (709)
|
T Consensus 245 ~ 245 (312)
T 3aez_A 245 T 245 (312)
T ss_dssp T
T ss_pred c
Confidence 3
No 78
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.90 E-value=2.6e-27 Score=257.73 Aligned_cols=175 Identities=19% Similarity=0.168 Sum_probs=150.3
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-CCEEEECCEeCCCCCHHHhhcceEEEcC-----CCCCCc
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQDICEVTLESLRKSIGVVPQ-----DTVLFN 546 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~-~G~I~idG~di~~~~~~~lR~~i~~V~Q-----~~~LF~ 546 (709)
++|++++ +++|+.++|+|||||||||++++|+|+|+|+ +|+|.+.|.++. + .+|+.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4677765 8999999999999999999999999999998 899988776664 2 46789999999 999999
Q ss_pred hhHHHHHHcCCCCC-------CHHHHHHHHHHHchH-----------------HHH------------HhCCCCcccccc
Q 005205 547 DTIFHNIRYGRLSA-------TEEEVYDAARRAAIH-----------------DTI------------MNFPAKYSTVVG 590 (709)
Q Consensus 547 gTIreNI~~g~~~~-------s~~ei~~A~~~a~l~-----------------~~I------------~~Lp~G~dT~vG 590 (709)
++|++|+++ +|+. +++.++.+++.++.. ..+ ..+|+++++.|+
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999998 5766 778888888877531 221 124779999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHHhcCCCeEEEEecCchH
Q 005205 591 ERGLKLSGGEKQRVALARAFLKAPPI--LLCDEATSALDST----T-----EAEILNALKSLANNRTSIFIAHRLTT 656 (709)
Q Consensus 591 e~G~~LSGGQrQRiaIARAll~~p~I--LILDEaTSaLD~~----t-----E~~I~~~L~~l~~~~TvIvIaHRlst 656 (709)
+++..+||| ||++|||+++.+|+| +|+||+||+||.. + |..++++++.+.+|+|++.+|||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 999999999 899999999999999 9999999999976 3 55788899999999999999999984
No 79
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.90 E-value=1.4e-26 Score=224.32 Aligned_cols=111 Identities=20% Similarity=0.270 Sum_probs=90.0
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCC---CCEEEECCEeCCCCC---HHHhh-cceE----EEcCCCCCCchhHHHHHH
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVT---LESLR-KSIG----VVPQDTVLFNDTIFHNIR 554 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly~p~---~G~I~idG~di~~~~---~~~lR-~~i~----~V~Q~~~LF~gTIreNI~ 554 (709)
++++|||+||||||||+++|+|+|+|+ .|.|++||.++.+++ .+++| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999998887 77888 5788 899999988 211
Q ss_pred cCCCCCCHHHHHHHHHHHchHHHHHh-CCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 005205 555 YGRLSATEEEVYDAARRAAIHDTIMN-FPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (709)
Q Consensus 555 ~g~~~~s~~ei~~A~~~a~l~~~I~~-Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~IL 617 (709)
+ ++++ .|+++++|.. || ||||.|+|+ |||||||||+||||++++|+|.
T Consensus 77 -~-----~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V-----SEEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C-----CHHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C-----Chhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1222 7899999999 99 999999995 9999999999999999999873
No 80
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.90 E-value=6.2e-24 Score=250.18 Aligned_cols=95 Identities=22% Similarity=0.368 Sum_probs=88.0
Q ss_pred ccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEE
Q 005205 589 VGERGLKLSGGEKQRVALARAFLKAP--PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIV 665 (709)
Q Consensus 589 vGe~G~~LSGGQrQRiaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iiv 665 (709)
++..-.+|||||||||+|||||..+| .+|||||||++||++.-+.+.+.|+++. .|.|+|+|+||+..++.||+|++
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~ 452 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVD 452 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEE
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEE
Confidence 45566799999999999999999999 5999999999999999999999998875 47999999999999999999999
Q ss_pred E------eCCEEEEecChHHHhhc
Q 005205 666 L------ENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 666 l------~~G~Ive~Gth~eLl~~ 683 (709)
| ++|+++..|+++++++.
T Consensus 453 lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 453 VGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp ECSSSGGGCCSEEEEECGGGGGGC
T ss_pred eCCCcccCCCEEEEecCHHHHHhc
Confidence 9 79999999999999875
No 81
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.88 E-value=4.5e-25 Score=229.66 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=98.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCch-hHHHHHHcCCCCCCHHHH
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEV 565 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~g-TIreNI~~g~~~~s~~ei 565 (709)
++|||||||||||||+++|+|++.|++|+|.++|.++.. ...++.+++|+|++.++.. ||.||+.||..... ++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~-~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN-ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBC-TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhccc-HHH
Confidence 589999999999999999999999999999999988743 3457889999999998865 99999999864221 222
Q ss_pred HHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCC
Q 005205 566 YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR 645 (709)
Q Consensus 566 ~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~ 645 (709)
++.+......++-..++ ..||||||||++||||++. +++|||||++||+.. ..+++.|.+ .+
T Consensus 80 ~~~i~~~~~~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~---~~ 141 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSK---VV 141 (270)
T ss_dssp SHHHHHHHHHHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHT---TS
T ss_pred HHHHHHHHHHHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHh---cC
Confidence 22222222233333322 2699999999999999875 999999999999886 344444443 48
Q ss_pred eEEEEecCchHHh
Q 005205 646 TSIFIAHRLTTAM 658 (709)
Q Consensus 646 TvIvIaHRlsti~ 658 (709)
++|+|.|+..++.
T Consensus 142 ~vI~Vi~K~D~lt 154 (270)
T 3sop_A 142 NIIPVIAKADTMT 154 (270)
T ss_dssp EEEEEETTGGGSC
T ss_pred cEEEEEeccccCC
Confidence 9999999987663
No 82
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.88 E-value=9.6e-27 Score=231.36 Aligned_cols=169 Identities=20% Similarity=0.275 Sum_probs=135.1
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCCC-------------CCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchh
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFD-------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDT 548 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gT 548 (709)
+++|++++||||||||||||+++|+|+|+ |..|+ +||+++..++.+.+|+.+ +|++++|++|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999997 88998 699999999999999886 7999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH-HhccCCCEEEEeCCCCCCC
Q 005205 549 IFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR-AFLKAPPILLCDEATSALD 627 (709)
Q Consensus 549 IreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR-All~~p~ILILDEaTSaLD 627 (709)
+.+|+ ||. ++++++++++.+.+.-+ .-.|+|+++.... ++ .|| +++++|++++|||+|+++|
T Consensus 76 ~~~n~-~g~---~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d 138 (198)
T 1lvg_A 76 FSGNL-YGT---SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRN 138 (198)
T ss_dssp ETTEE-EEE---EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHT
T ss_pred ecCcc-CCC---CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcC
Confidence 99998 874 58899999886422211 2346788776432 22 677 8999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhh
Q 005205 628 STTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 628 ~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~ 682 (709)
.+||+.|++.|.+..++ +.++| ++ ..+|+|+|+|+ -..+.++|.+
T Consensus 139 ~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~----le~a~~~l~~ 183 (198)
T 1lvg_A 139 TETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD----LDKAYATLKQ 183 (198)
T ss_dssp CSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS----HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC----HHHHHHHHHH
Confidence 99999999999887655 46788 66 89999999985 2344555543
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.88 E-value=1.4e-22 Score=218.52 Aligned_cols=82 Identities=22% Similarity=0.239 Sum_probs=76.6
Q ss_pred CCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEE
Q 005205 595 KLSGGEKQRVALARAFL---------KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIV 665 (709)
Q Consensus 595 ~LSGGQrQRiaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iiv 665 (709)
.||||||||++|||+|. .+|||||||||||+||+...+.+.+.|.++. .|+|++|| ++. .||+|++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998864 79999999 454 8999999
Q ss_pred EeCCEEEEecChHHHh
Q 005205 666 LENGKVIEQGSHDDLL 681 (709)
Q Consensus 666 l~~G~Ive~Gth~eLl 681 (709)
|++|+|++.|+++|+.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999999874
No 84
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.88 E-value=1.1e-26 Score=252.03 Aligned_cols=220 Identities=12% Similarity=0.041 Sum_probs=163.6
Q ss_pred HHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCC-CCCCceE--
Q 005205 384 LCSHGILS-GEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPL-NLKGGSI-- 459 (709)
Q Consensus 384 ~g~~~v~~-g~ltvG~l~a~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~rl~~~l~~~~~~~~~~~~~~~-~~~~g~I-- 459 (709)
.|++.+.+ |.+|.|++.+|+.++..+..| .+......++.+..+.+|+.+++ +|...+....... ....+.+
T Consensus 54 ~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~itl 129 (361)
T 2gza_A 54 ASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRRTL 129 (361)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCCCH
T ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCCCH
Confidence 45555555 889999999999988887766 33333333444555667887777 2222111100000 0112345
Q ss_pred -------EEEeEEEE---ecC-Ccccc---------eeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEEC
Q 005205 460 -------QFDNVHFS---YLT-ERKIL---------DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (709)
Q Consensus 460 -------~f~nVsF~---Y~~-~~~vL---------~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~id 519 (709)
+|+||+|+ |++ ++++| +++||+|++|+.++|+||||||||||+++|+|+|+|++|.|.++
T Consensus 130 ~~l~~~g~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 130 EDYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp HHHHHTTTTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred HHHHhcCCcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 89999999 964 34566 99999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHhhcceEEEc-CCCCC---CchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCC
Q 005205 520 GQDICEVTLESLRKSIGVVP-QDTVL---FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (709)
Q Consensus 520 G~di~~~~~~~lR~~i~~V~-Q~~~L---F~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~ 595 (709)
|. .++....+|+.+++|+ |++.+ +..|+++||.++....++..+..+++.++++++++.+|.|++|.+++-+.+
T Consensus 210 ~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~ 287 (361)
T 2gza_A 210 DV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAG 287 (361)
T ss_dssp SS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECS
T ss_pred Cc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 85 5676667889999999 99887 889999999988665556556666677788999999999999999998888
Q ss_pred CChHHHHHHHHHHH
Q 005205 596 LSGGEKQRVALARA 609 (709)
Q Consensus 596 LSGGQrQRiaIARA 609 (709)
-+.+..+|++....
T Consensus 288 ~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 288 SCELTFERLALMVL 301 (361)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh
Confidence 89999999988763
No 85
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.88 E-value=3.6e-24 Score=226.17 Aligned_cols=175 Identities=14% Similarity=0.202 Sum_probs=128.3
Q ss_pred eeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC----HHHh--hcceEEEcCCCC-CCc-h
Q 005205 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESL--RKSIGVVPQDTV-LFN-D 547 (709)
Q Consensus 476 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~----~~~l--R~~i~~V~Q~~~-LF~-g 547 (709)
+++||++++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..|+||+|++. ++. .
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4578899999999999999999999999999999999999999999886653 2334 457999999997 654 5
Q ss_pred hHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCC
Q 005205 548 TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP--ILLCDEATSA 625 (709)
Q Consensus 548 TIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~--ILILDEaTSa 625 (709)
|++||+.++.....+. ..++.+++. +-.+..++ .|| |||++||||+..+|+ +|+|| ||++
T Consensus 171 ~v~e~l~~~~~~~~d~---~lldt~gl~-------~~~~~~~~----eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYDV---VLCDTSGRL-------HTNYSLME----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHTTCSE---EEECCCCCS-------SCCHHHHH----HHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHcCCcc---hHHhcCCCC-------cchhHHHH----HHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 9999998752110010 011111111 11122222 378 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEec---------CchHHh-hcCeEEEEeCCEEE
Q 005205 626 LDSTTEAEILNALKSLANNRTSIFIAH---------RLTTAM-QCDEIIVLENGKVI 672 (709)
Q Consensus 626 LD~~tE~~I~~~L~~l~~~~TvIvIaH---------Rlsti~-~aD~Iivl~~G~Iv 672 (709)
||+.+.. +.+.+ ..+.|+|++|| .++.+. ..+.|.++..|+.+
T Consensus 233 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 233 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred cCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 9998653 23332 24789999999 455553 46899999999754
No 86
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.86 E-value=1.6e-23 Score=225.29 Aligned_cols=193 Identities=15% Similarity=0.225 Sum_probs=152.6
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC-------CCHHH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE-------VTLES 530 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~-------~~~~~ 530 (709)
-++.+||++.|+.+..+|+++ |+|.+||+++|+|+||||||||+++|+|+.+|+.|.|.++|.+.++ +....
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~ 123 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQST 123 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHH
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhh
Confidence 488999999997567899999 9999999999999999999999999999999999999999975322 23334
Q ss_pred hhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccc-cCCCCCCChHHHHHHHHHHH
Q 005205 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVV-GERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~v-Ge~G~~LSGGQrQRiaIARA 609 (709)
+++.+.+++|... ...+++..+.....+.++... .|.+..+ -+.-.+||+|| ||+++|
T Consensus 124 ~~~~v~~~~~~~~----------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la-- 182 (347)
T 2obl_A 124 LSKCVLVVTTSDR----------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA-- 182 (347)
T ss_dssp HTTEEEEEECTTS----------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH--
T ss_pred hhceEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH--
Confidence 5666777776431 113444444444455555443 3444221 13456899999 999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---CCC-----eEEEEecCchHHhhcCeEEEEeCCEEEEecChHHH
Q 005205 610 FLKAPPILLCDEATSALDSTTEAEILNALKSLA---NNR-----TSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDL 680 (709)
Q Consensus 610 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~---~~~-----TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eL 680 (709)
+.+|++ |++||+..-..+.+-++++. +|. |++++||+++ -.-||++++|.+|+|+..|+.+|+
T Consensus 183 -l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 183 -SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp -TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred -cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 689998 99999999999999998875 366 8999999999 677999999999999999988776
No 87
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.86 E-value=2.8e-24 Score=211.73 Aligned_cols=172 Identities=18% Similarity=0.184 Sum_probs=130.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHH
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEE 564 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~e 564 (709)
|++++|+||||||||||+++|+|+++ ++| |.+||.++.+++ .+++++++++|+. +++ ++|+.--. ...+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~--~~~~- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVG--LEPP- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECC--CCCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhccc--ccCC-
Confidence 78999999999999999999999999 999 999999987654 5799999999986 443 33332110 0000
Q ss_pred HHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH-HHHH---HhccCCCEEEEeC--CCCCCCHHHHHHHHHHH
Q 005205 565 VYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV-ALAR---AFLKAPPILLCDE--ATSALDSTTEAEILNAL 638 (709)
Q Consensus 565 i~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi-aIAR---All~~p~ILILDE--aTSaLD~~tE~~I~~~L 638 (709)
+...+..+|+.|..+|||||+++ +++| |+.++|+|||||| ||..+|..+-+.+.+.+
T Consensus 70 -----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 70 -----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp -----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred -----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 11234589999999999999999 6666 7899999999999 88889998877777777
Q ss_pred HHhcCCCeEEE----EecCchHHhhcCeEEEEeCCEEEEecChHHHhhcccHHHHHHH
Q 005205 639 KSLANNRTSIF----IAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWG 692 (709)
Q Consensus 639 ~~l~~~~TvIv----IaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~~g~Y~~l~~ 692 (709)
+. .+|+|+ |+||.+ ...+|+|..+++|+|++-... +++..|.++++
T Consensus 133 ~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~~----nr~~~~~~i~~ 182 (189)
T 2i3b_A 133 ST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTKE----NRNHLLPDIVT 182 (189)
T ss_dssp HC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCSS----SGGGHHHHHHH
T ss_pred hC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeChH----hHHHHHHHHHH
Confidence 63 345553 349987 667899999999999975431 23444555543
No 88
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.86 E-value=2.4e-24 Score=215.41 Aligned_cols=168 Identities=17% Similarity=0.180 Sum_probs=112.0
Q ss_pred cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCch-hHH
Q 005205 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIF 550 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~g-TIr 550 (709)
.++++| .+|++||+++|+||||||||||+++|+|+++ .|.+++.....-.....++.++|++|++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 578888 7999999999999999999999999999996 355554221111112346789999999988764 566
Q ss_pred HHHHc-----CC-C--CCCHHHHHHHH----------HHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 005205 551 HNIRY-----GR-L--SATEEEVYDAA----------RRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (709)
Q Consensus 551 eNI~~-----g~-~--~~s~~ei~~A~----------~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~ 612 (709)
+|+.. ++ . ..+.+++.+.+ +..++.++....|.. || ||+.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEA-----------VT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTS-----------EE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCc-----------EE-----------EEEE
Confidence 66531 10 0 11233443333 334554444444432 33 8999
Q ss_pred CCCEEEEeCCCCCC----CHHHHHHHHHHHHHhc--CCCeEEEEecCchHHh-hcCeEEEEe
Q 005205 613 APPILLCDEATSAL----DSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVLE 667 (709)
Q Consensus 613 ~p~ILILDEaTSaL----D~~tE~~I~~~L~~l~--~~~TvIvIaHRlsti~-~aD~Iivl~ 667 (709)
+|++++|||||+++ |+.+.+.+.+.++++. .+.|+|+|+|.++.+. .||+|++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 7778889998888875 4789999999999876 499999985
No 89
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.85 E-value=2.5e-23 Score=223.97 Aligned_cols=174 Identities=14% Similarity=0.204 Sum_probs=129.0
Q ss_pred eeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC----HHHh--hcceEEEcCCCC-CC-chh
Q 005205 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESL--RKSIGVVPQDTV-LF-NDT 548 (709)
Q Consensus 477 ~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~----~~~l--R~~i~~V~Q~~~-LF-~gT 548 (709)
.+||++++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..|+||+|++. ++ ..|
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 578899999999999999999999999999999999999999999986643 2333 568999999987 55 569
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCC
Q 005205 549 IFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP--ILLCDEATSAL 626 (709)
Q Consensus 549 IreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~--ILILDEaTSaL 626 (709)
++|||.++.....+. ..++.+++. +-.+..+. .|| |||++||||+..+|+ +|+|| ||++|
T Consensus 229 v~e~l~~~~~~~~d~---~lldt~Gl~-------~~~~~~~~----eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 229 LSKAVKRGKEEGYDV---VLCDTSGRL-------HTNYSLME----ELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHTTCSE---EEEECCCCS-------SCCHHHHH----HHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHhCCCHH---HHHHhcCCC-------hhhhhHHH----HHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 999998753110111 011111111 11122222 378 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEEec---------CchHHh-hcCeEEEEeCCEEE
Q 005205 627 DSTTEAEILNALKSLANNRTSIFIAH---------RLTTAM-QCDEIIVLENGKVI 672 (709)
Q Consensus 627 D~~tE~~I~~~L~~l~~~~TvIvIaH---------Rlsti~-~aD~Iivl~~G~Iv 672 (709)
|+.+... .+.+ ..+.|+|++|| .++.+. ..+.|.++..|+.+
T Consensus 291 D~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 291 NMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp GGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 9987642 2322 24789999999 455553 46899999999743
No 90
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.83 E-value=2.2e-23 Score=226.64 Aligned_cols=148 Identities=18% Similarity=0.265 Sum_probs=114.8
Q ss_pred cceeeeeEeeC--CcEEEEEcCCCccHHHHHHHHhcCCCCCC----CEEEE----CCEeCCCCCHHHhhcceEEEcCCCC
Q 005205 474 ILDGVSFVVPA--GKSVAIVGTSGSGKSTILRLLFRSFDTHS----GSIRI----DGQDICEVTLESLRKSIGVVPQDTV 543 (709)
Q Consensus 474 vL~~isl~I~~--Ge~vaIVG~SGsGKSTL~~LL~rly~p~~----G~I~i----dG~di~~~~~~~lR~~i~~V~Q~~~ 543 (709)
+.+.|+++|++ |+++||||+||||||||+++|+|+|+|++ |+|++ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45689999999 99999999999999999999999999999 99987 46666 5666666 56999999999
Q ss_pred CCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCC--ccccc-c-------CCCCCCChHHHHHHHHHHHh---
Q 005205 544 LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK--YSTVV-G-------ERGLKLSGGEKQRVALARAF--- 610 (709)
Q Consensus 544 LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G--~dT~v-G-------e~G~~LSGGQrQRiaIARAl--- 610 (709)
+|++|++|||.+++++..+..++..........++..++.+ ++..+ + ++|.++|+||+||++|+|+|
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l 314 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL 314 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence 99999999999987666666666666555566677776644 44422 3 67888999999999999999
Q ss_pred cc--CCCEEEEeCCC
Q 005205 611 LK--APPILLCDEAT 623 (709)
Q Consensus 611 l~--~p~ILILDEaT 623 (709)
++ +++|+++||||
T Consensus 315 ~~~~~~~ililde~~ 329 (365)
T 1lw7_A 315 LDKYKVPYIEIESPS 329 (365)
T ss_dssp HHGGGCCCEEEECSS
T ss_pred HHHcCCCEEEeCCCC
Confidence 77 89999999997
No 91
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.83 E-value=4.8e-21 Score=227.47 Aligned_cols=164 Identities=24% Similarity=0.326 Sum_probs=119.8
Q ss_pred HhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCC-CHHHHHHHHHHHchHHHHHhCCC
Q 005205 505 LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSA-TEEEVYDAARRAAIHDTIMNFPA 583 (709)
Q Consensus 505 L~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~-s~~ei~~A~~~a~l~~~I~~Lp~ 583 (709)
.-+.+.|..|+|+++|.+|.++....+.+.++++.+- .+...+. --.++.+..+ ...+++..+
T Consensus 388 ~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~------------~l~~~~~~~~~~~~~~~~--~~~~~L~~v-- 451 (916)
T 3pih_A 388 GGRRLNREALSVKINGLNIHEFTELSISEELEFLKNL------------NLTEREREIVGELLKEIE--KRLEFLVDV-- 451 (916)
T ss_dssp CSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSC------------CCCTTTTTTHHHHHHHHH--HHHHHHHTT--
T ss_pred ccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhc------------cCcHHHHHHHHhhHHHHH--HHHHHHHHc--
Confidence 3456899999999999998664433333333332211 1110000 0111222111 123445554
Q ss_pred Ccccc-ccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhh
Q 005205 584 KYSTV-VGERGLKLSGGEKQRVALARAFLKAPP--ILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ 659 (709)
Q Consensus 584 G~dT~-vGe~G~~LSGGQrQRiaIARAll~~p~--ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~ 659 (709)
|++.. ......+||||||||++|||||..+|+ +|||||||++||+...+.+.+.|+++. +|+|+|+|+|++..++.
T Consensus 452 gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~ 531 (916)
T 3pih_A 452 GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN 531 (916)
T ss_dssp TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT
T ss_pred CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 44432 455567899999999999999999887 999999999999999999999999885 47999999999999999
Q ss_pred cCeEEEE------eCCEEEEecChHHHhhcc
Q 005205 660 CDEIIVL------ENGKVIEQGSHDDLLTKA 684 (709)
Q Consensus 660 aD~Iivl------~~G~Ive~Gth~eLl~~~ 684 (709)
||+|++| ++|+|++.|+++|+++..
T Consensus 532 aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 532 ADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp CSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred CCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 9999999 999999999999998753
No 92
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.82 E-value=1.6e-23 Score=209.49 Aligned_cols=155 Identities=16% Similarity=0.188 Sum_probs=119.5
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCch---hHHHHHHc--C
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND---TIFHNIRY--G 556 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~g---TIreNI~~--g 556 (709)
.++|+++||+|+||||||||+++|+|++.| +++||+||+++++. |+++|+.+ +
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 579999999999999999999999999875 69999999999854 67777654 3
Q ss_pred CCC-CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC-------CCH
Q 005205 557 RLS-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSA-------LDS 628 (709)
Q Consensus 557 ~~~-~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSa-------LD~ 628 (709)
.|. .+.+++.++++..++.+++.. | .++...|+++. |+||+++||+++.+|+++++||||++ ||+
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~~~~-----~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~ 133 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-VYDFRAYTRSP-----RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDA 133 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTEECS-----SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEEC
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-cccCcccCCCC-----CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeC
Confidence 332 345677788877766655543 3 44444444332 56899999999999999999999999 999
Q ss_pred HHHHHHHHHHHHh--cCCCeEEEEecCc-hHH------------hhcCeEEE
Q 005205 629 TTEAEILNALKSL--ANNRTSIFIAHRL-TTA------------MQCDEIIV 665 (709)
Q Consensus 629 ~tE~~I~~~L~~l--~~~~TvIvIaHRl-sti------------~~aD~Iiv 665 (709)
.++..+.+.+++. .+|+|++.++|+. +.+ +.||.|+.
T Consensus 134 ~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~ 185 (211)
T 3asz_A 134 DADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVP 185 (211)
T ss_dssp CHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEe
Confidence 9999999998775 3589999999984 333 45787754
No 93
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.82 E-value=1.2e-22 Score=231.33 Aligned_cols=171 Identities=17% Similarity=0.158 Sum_probs=123.8
Q ss_pred EecCCcccceeeee-EeeCCcEEEEEcCCCccHHHHHHH--HhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCC
Q 005205 467 SYLTERKILDGVSF-VVPAGKSVAIVGTSGSGKSTILRL--LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV 543 (709)
Q Consensus 467 ~Y~~~~~vL~~isl-~I~~Ge~vaIVG~SGsGKSTL~~L--L~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~ 543 (709)
+|+.+.++|+++|| .|++|++++|+||||||||||+++ +.|+++|.+|.|+++|.+. ..+....++.+|+++|++.
T Consensus 20 ~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 20 KMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp EECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHH
T ss_pred cccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhh
Confidence 46666789999999 999999999999999999999999 6899999999999999873 2234456678999999875
Q ss_pred CCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 005205 544 LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEAT 623 (709)
Q Consensus 544 LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaT 623 (709)
.. +|+.+-.... +++.+++++..++.+.....| ..|||| +|++++|||||
T Consensus 99 ~~-----~~l~~~~~~~-~~~~~~~l~~~~l~~~~~~~~-----------~~LS~g-------------~~~~lilDe~t 148 (525)
T 1tf7_A 99 DE-----GKLFILDASP-DPEGQEVVGGFDLSALIERIN-----------YAIQKY-------------RARRVSIDSVT 148 (525)
T ss_dssp HT-----TSEEEEECCC-CSSCCSCCSSHHHHHHHHHHH-----------HHHHHH-------------TCSEEEEECST
T ss_pred cc-----CcEEEEecCc-ccchhhhhcccCHHHHHHHHH-----------HHHHHc-------------CCCEEEECCHH
Confidence 21 2232211100 011111222223333222221 123454 57899999999
Q ss_pred CC-----CCHHHHHHHHHHHHHhc-CCCeEEEEecCchHH---------hh-cCeEEEEeC
Q 005205 624 SA-----LDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA---------MQ-CDEIIVLEN 668 (709)
Q Consensus 624 Sa-----LD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti---------~~-aD~Iivl~~ 668 (709)
+. ||+...+.+.+.++.+. .|+|+|+|+|+++.+ .. ||+|++|++
T Consensus 149 ~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 149 SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 84 58899999998887764 489999999999874 44 999999998
No 94
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.82 E-value=4.7e-21 Score=202.06 Aligned_cols=182 Identities=15% Similarity=0.130 Sum_probs=125.8
Q ss_pred cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCC-EEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHH
Q 005205 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-SIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G-~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIr 550 (709)
.++|+++++.+++|+.++|+||+|||||||++.|++...|++| .|.+.+. +.+...+++++..+.|+..+ +..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~---e~~~~~~~~r~~~~~~~~~~---~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML---EESVEETAEDLIGLHNRVRL---RQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES---SSCHHHHHHHHHHHHTTCCG---GGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC---cCCHHHHHHHHHHHHcCCCh---hhc
Confidence 3589999999999999999999999999999999999999988 7765443 24566777666666655432 233
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHH-HHHHHHHHHhccCCCEEEEeCCCC---C-
Q 005205 551 HNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGE-KQRVALARAFLKAPPILLCDEATS---A- 625 (709)
Q Consensus 551 eNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQ-rQRiaIARAll~~p~ILILDEaTS---a- 625 (709)
+|+..+. .++++..++++ +.+...+-+ +.+...++|.+| +||+. |+|+..+|+++||||||+ +
T Consensus 96 ~~l~~~~--~~~~~~~~~~~-----~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 96 DSLKREI--IENGKFDQWFD-----ELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp HHHHHHH--HHHTHHHHHHH-----HHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC------
T ss_pred cccccCC--CCHHHHHHHHH-----HHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCC
Confidence 4554432 22334433322 222222222 223334689999 77777 999999999999999999 4
Q ss_pred --CCH-HHHHHHHHHHHHhc--CCCeEEEEecCc--h--------------------HH-hhcCeEEEEeCCEE
Q 005205 626 --LDS-TTEAEILNALKSLA--NNRTSIFIAHRL--T--------------------TA-MQCDEIIVLENGKV 671 (709)
Q Consensus 626 --LD~-~tE~~I~~~L~~l~--~~~TvIvIaHRl--s--------------------ti-~~aD~Iivl~~G~I 671 (709)
+|. ..-..+.+.|+++. .++|+|+++|.. . .+ ..||+|++|++|+.
T Consensus 164 ~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 164 GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 45567888887764 379999999995 3 34 46999999999875
No 95
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.82 E-value=2.4e-20 Score=211.85 Aligned_cols=76 Identities=24% Similarity=0.369 Sum_probs=71.7
Q ss_pred CCC-ChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCC
Q 005205 594 LKL-SGGEKQRVALARAFLKAP--PILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENG 669 (709)
Q Consensus 594 ~~L-SGGQrQRiaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G 669 (709)
..| |||||||++||||++.+| ++|||||||++||+.+...|.+.|+++.+++|+|+|||++..+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 346 999999999999999999 9999999999999999999999999987799999999999999999999999654
No 96
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.81 E-value=9e-21 Score=228.80 Aligned_cols=171 Identities=18% Similarity=0.207 Sum_probs=123.8
Q ss_pred ceEEEEe-----EEEEecCCcccceeeeeEeeC-------CcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC
Q 005205 457 GSIQFDN-----VHFSYLTERKILDGVSFVVPA-------GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (709)
Q Consensus 457 g~I~f~n-----VsF~Y~~~~~vL~~isl~I~~-------Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~ 524 (709)
+.|+++| |++.|+++.+|++|++|++++ |++++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------- 814 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------
Confidence 3599999 999996567899999999988 999999999999999999999 98863
Q ss_pred CCCHHHhhcceE-EEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 525 EVTLESLRKSIG-VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 525 ~~~~~~lR~~i~-~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+.++| ||||++. .-|+.|||.. +- ++.|.+. .|. ..+|+++++
T Consensus 815 -------~aqiG~~Vpq~~~--~l~v~d~I~~-ri--------------g~~d~~~---~~~--------stf~~em~~- 858 (1022)
T 2o8b_B 815 -------MAQMGCYVPAEVC--RLTPIDRVFT-RL--------------GASDRIM---SGE--------STFFVELSE- 858 (1022)
T ss_dssp -------HHTTTCCEESSEE--EECCCSBEEE-EC--------------C--------------------CHHHHHHHH-
T ss_pred -------HhheeEEeccCcC--CCCHHHHHHH-Hc--------------CCHHHHh---hch--------hhhHHHHHH-
Confidence 34676 9999983 5677777731 11 1122111 122 356777765
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHHH-HHHHHHHHHhc-C-CCeEEEEecCchHHhh-cCeEEEEeCCEEE--EecCh
Q 005205 604 VALARAFLKAPPILLCDEATSALDSTTE-AEILNALKSLA-N-NRTSIFIAHRLTTAMQ-CDEIIVLENGKVI--EQGSH 677 (709)
Q Consensus 604 iaIARAll~~p~ILILDEaTSaLD~~tE-~~I~~~L~~l~-~-~~TvIvIaHRlsti~~-aD~Iivl~~G~Iv--e~Gth 677 (709)
+++||++..+|+++||||||+++|+... ..+.+.|+.+. + ++|+|++||.++.+.. ||++.|+ +|+++ +.|+.
T Consensus 859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 9999999999999999999999999874 44566676664 3 7999999999998775 8998887 58887 55654
Q ss_pred H
Q 005205 678 D 678 (709)
Q Consensus 678 ~ 678 (709)
+
T Consensus 938 ~ 938 (1022)
T 2o8b_B 938 E 938 (1022)
T ss_dssp -
T ss_pred c
Confidence 3
No 97
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.81 E-value=4.9e-22 Score=203.93 Aligned_cols=169 Identities=11% Similarity=0.108 Sum_probs=109.6
Q ss_pred CCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhH
Q 005205 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTI 549 (709)
Q Consensus 470 ~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTI 549 (709)
+++++|+|+||++++|+++||+||+|||||||+++|++++ |.+.+| ..++.+++++|+++...-|.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCH
Confidence 4568999999999999999999999999999999999976 666554 46789999999975445699
Q ss_pred HHHHHcCCCC--C------CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 005205 550 FHNIRYGRLS--A------TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDE 621 (709)
Q Consensus 550 reNI~~g~~~--~------s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDE 621 (709)
.+|+.+.... . +.+++.+. ++.+.++.+..+ ..||+||+||+++ ++++.+|+++||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------L~~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg 141 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHPDAFDNDLMHRT---------LKNIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEG 141 (245)
T ss_dssp HHHHHHHTTCCCTTSGGGBCHHHHHHH---------HHHHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEEC
T ss_pred hHhhhhhccCCCCCCcccccHHHHHHH---------HHHHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeC
Confidence 9998753211 1 11222222 222334445444 4799999999998 68999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHH-hh-cCeEEEEeCCEEEEecChHHHhhc
Q 005205 622 ATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTA-MQ-CDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 622 aTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti-~~-aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
|....|.. +.++ .+.|++++||...-+ +. ++.+ ++|+ +.+|+++.
T Consensus 142 ~~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 142 ILVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp TTTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHH
T ss_pred ccccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 98877754 2333 478999999974333 33 3333 6675 67777653
No 98
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.80 E-value=1.9e-20 Score=213.05 Aligned_cols=169 Identities=13% Similarity=0.092 Sum_probs=127.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
++.++++++|++-..+|. ..|++|+.++|+|++|||||||++.++++..|+ |+ +.+.++
T Consensus 258 ~~~~~l~~g~~~ld~vL~---g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~ 316 (525)
T 1tf7_A 258 SSNVRVSSGVVRLDEMCG---GGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFA 316 (525)
T ss_dssp CCCCEECCSCHHHHHHTT---SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEE
T ss_pred cccceeecChHHHHHHhC---CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEE
Confidence 466778777753123444 499999999999999999999999999998875 53 125677
Q ss_pred cCCCCCCchhHHHHHH-cCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 005205 539 PQDTVLFNDTIFHNIR-YGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPIL 617 (709)
Q Consensus 539 ~Q~~~LF~gTIreNI~-~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~IL 617 (709)
+|++ ..++++|.. +| .+.++ +.. .|+.......-..|||||+||+++||++..+|++|
T Consensus 317 ~ee~---~~~l~~~~~~~g---~~~~~------------~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~ll 375 (525)
T 1tf7_A 317 YEES---RAQLLRNAYSWG---MDFEE------------MER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARI 375 (525)
T ss_dssp SSSC---HHHHHHHHHTTS---CCHHH------------HHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EeCC---HHHHHHHHHHcC---CCHHH------------HHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEE
Confidence 8887 346777753 33 22222 111 13333333344679999999999999999999999
Q ss_pred EEeCCCCCCCHH-----HHHHHHHHHHHhc-CCCeEEEEecCc----------hHHh-hcCeEEEEeCCE
Q 005205 618 LCDEATSALDST-----TEAEILNALKSLA-NNRTSIFIAHRL----------TTAM-QCDEIIVLENGK 670 (709)
Q Consensus 618 ILDEaTSaLD~~-----tE~~I~~~L~~l~-~~~TvIvIaHRl----------sti~-~aD~Iivl~~G~ 670 (709)
||| ||++||.. ..+.+.+.++.+. .+.|+|+|+|.. ..+. .||+|++|++|+
T Consensus 376 ilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 376 AID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999 99999998 8888877776654 589999999998 5555 489999999987
No 99
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.80 E-value=6.3e-19 Score=189.52 Aligned_cols=79 Identities=24% Similarity=0.352 Sum_probs=70.2
Q ss_pred CCCCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEE
Q 005205 593 GLKLSGGEKQ------RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIV 665 (709)
Q Consensus 593 G~~LSGGQrQ------RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iiv 665 (709)
-..||||||| |+++|||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+......||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 3579999999 7788999999999999999999999999999999998864 56899999999988888999999
Q ss_pred Ee--CCEE
Q 005205 666 LE--NGKV 671 (709)
Q Consensus 666 l~--~G~I 671 (709)
|+ +|..
T Consensus 326 l~~~~g~s 333 (339)
T 3qkt_A 326 ISLENGSS 333 (339)
T ss_dssp EEEETTEE
T ss_pred EEecCCcc
Confidence 85 4543
No 100
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.79 E-value=3.9e-21 Score=207.31 Aligned_cols=174 Identities=20% Similarity=0.193 Sum_probs=127.1
Q ss_pred EeEEEEecCCcccceee-eeEeeCCcEEEEEcCCCccHHHHHHHHhcCC--CCCC----CE-EEECCEeCCCCCHHHhhc
Q 005205 462 DNVHFSYLTERKILDGV-SFVVPAGKSVAIVGTSGSGKSTILRLLFRSF--DTHS----GS-IRIDGQDICEVTLESLRK 533 (709)
Q Consensus 462 ~nVsF~Y~~~~~vL~~i-sl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly--~p~~----G~-I~idG~di~~~~~~~lR~ 533 (709)
+.++++++ .|+++ ++.|++|++++|+||+|||||||++.+++.+ +|++ |. |+||+.+.- .++
T Consensus 111 ~~isTG~~----~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~ 180 (349)
T 1pzn_A 111 GRISTGSK----SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPE 180 (349)
T ss_dssp CEECCSCH----HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHH
T ss_pred CeecCCCH----HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHH
Confidence 45555553 45554 6899999999999999999999999999998 6776 67 999997651 256
Q ss_pred ceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc--
Q 005205 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL-- 611 (709)
Q Consensus 534 ~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll-- 611 (709)
++++++|++.++..|+.|||.+..+. + |++|+|++.++++++
T Consensus 181 ~i~~i~q~~~~~~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~ 224 (349)
T 1pzn_A 181 RIREIAQNRGLDPDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKE 224 (349)
T ss_dssp HHHHHHHTTTCCHHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHH
Confidence 78999999999999999999887531 1 346777888888877
Q ss_pred -----cCCCEEEEeCCCCCCCHHH-------H-----HHHHHHHHHhc--CCCeEEEEecCchHHhh-cCeEEEEeCCEE
Q 005205 612 -----KAPPILLCDEATSALDSTT-------E-----AEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGKV 671 (709)
Q Consensus 612 -----~~p~ILILDEaTSaLD~~t-------E-----~~I~~~L~~l~--~~~TvIvIaHRlsti~~-aD~Iivl~~G~I 671 (709)
.+|++||+||||+.+|++. + ..+.+.|.++. .++|+|+++|..+.... ++.+.+...|++
T Consensus 225 lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~ 304 (349)
T 1pzn_A 225 LLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHI 304 (349)
T ss_dssp SSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCC
T ss_pred hccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcce
Confidence 6899999999999999973 1 34444555543 48999999998875542 345678889999
Q ss_pred EEecChHHHh
Q 005205 672 IEQGSHDDLL 681 (709)
Q Consensus 672 ve~Gth~eLl 681 (709)
++.++|..|.
T Consensus 305 l~~~~~~rL~ 314 (349)
T 1pzn_A 305 LAHSATLRVY 314 (349)
T ss_dssp CCTTCSEEEE
T ss_pred EeecCcEEEE
Confidence 9998887775
No 101
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.78 E-value=8e-21 Score=191.77 Aligned_cols=165 Identities=21% Similarity=0.224 Sum_probs=112.4
Q ss_pred EEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-------CCCEEEECCEeCCCCCHHHhhc
Q 005205 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-------HSGSIRIDGQDICEVTLESLRK 533 (709)
Q Consensus 461 f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-------~~G~I~idG~di~~~~~~~lR~ 533 (709)
++++++.++.-..+|.+ -|++|++++|+||||||||||++.|++++.| ..|.|++++.+. .+ ++
T Consensus 4 ~~~i~tG~~~LD~~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~ 74 (231)
T 4a74_A 4 IGRISTGSKSLDKLLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PE 74 (231)
T ss_dssp CCEECCSCHHHHHHTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HH
T ss_pred CCccCCCChhHHhHhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HH
Confidence 45566666432234433 6999999999999999999999999996655 445888888642 11 23
Q ss_pred ceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh---
Q 005205 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF--- 610 (709)
Q Consensus 534 ~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl--- 610 (709)
++++++|+..++..|+.||+.+..+. +..+ |++++..++++
T Consensus 75 ~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------------------------------~~~~~~~~~~~~~~ 118 (231)
T 4a74_A 75 RIREIAQNRGLDPDEVLKHIYVARAF-NSNH-----------------------------------QMLLVQQAEDKIKE 118 (231)
T ss_dssp HHHHHHHHTTSCHHHHHHTEEEEECC-SHHH-----------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHhhcEEEEecC-ChHH-----------------------------------HHHHHHHHHHHHHH
Confidence 57788899888888999999886542 2211 11222222222
Q ss_pred ----ccCCCEEEEeCCCCCCCHH-------HH-----HHHHHHHHHhc--CCCeEEEEec----CchHHhh-cCeEEEEe
Q 005205 611 ----LKAPPILLCDEATSALDST-------TE-----AEILNALKSLA--NNRTSIFIAH----RLTTAMQ-CDEIIVLE 667 (709)
Q Consensus 611 ----l~~p~ILILDEaTSaLD~~-------tE-----~~I~~~L~~l~--~~~TvIvIaH----Rlsti~~-aD~Iivl~ 667 (709)
..+|++++|||||+.+|++ .+ ..+.+.|.++. .++|+|+|+| ....+.. ||++++|+
T Consensus 119 ~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~ 198 (231)
T 4a74_A 119 LLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLR 198 (231)
T ss_dssp HTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEE
T ss_pred hcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEE
Confidence 2489999999999999984 22 25666665553 4899999999 4444655 89999999
Q ss_pred CCE
Q 005205 668 NGK 670 (709)
Q Consensus 668 ~G~ 670 (709)
+|+
T Consensus 199 ~~~ 201 (231)
T 4a74_A 199 KGK 201 (231)
T ss_dssp ECT
T ss_pred ecC
Confidence 763
No 102
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.78 E-value=3.1e-19 Score=198.12 Aligned_cols=73 Identities=32% Similarity=0.382 Sum_probs=68.2
Q ss_pred CCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchHHhhcCeEEEEe
Q 005205 595 KLSGGEKQRVALARAFL----KAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQCDEIIVLE 667 (709)
Q Consensus 595 ~LSGGQrQRiaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRlsti~~aD~Iivl~ 667 (709)
.||||||||++|||+|. ++||+||||||||+||+.+...+.+.|+++.+ +.|+|+|||+..++..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 39999999999999999 68999999999999999999999999998754 689999999999999999999986
No 103
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.78 E-value=1.6e-19 Score=212.90 Aligned_cols=152 Identities=22% Similarity=0.335 Sum_probs=116.7
Q ss_pred CCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCC-CCCHHH-------HHHHHHHHchHHHHHh
Q 005205 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL-SATEEE-------VYDAARRAAIHDTIMN 580 (709)
Q Consensus 509 y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~-~~s~~e-------i~~A~~~a~l~~~I~~ 580 (709)
|.|....|+++|.+|.+ +...||.|++.|... ..+.++ +.+..+.. +++..
T Consensus 432 l~~~~l~v~~~g~~i~q------------------~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~ 490 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIGE------------------VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQN 490 (972)
T ss_dssp BCTTTTTEESSSCBHHH------------------HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHH
T ss_pred cCHHHheeEECCCcHHH------------------HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhh
Confidence 67888899999977654 345678888877531 123311 11111221 22333
Q ss_pred CCCCcccc-ccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchH
Q 005205 581 FPAKYSTV-VGERGLKLSGGEKQRVALARAFLKAP--PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTT 656 (709)
Q Consensus 581 Lp~G~dT~-vGe~G~~LSGGQrQRiaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlst 656 (709)
+ |++.. +...-.+|||||||||+||+||..+| ++|||||||++||+..-+.+.+.|+++. .|.|+|+|+||+..
T Consensus 491 v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~ 568 (972)
T 2r6f_A 491 V--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 568 (972)
T ss_dssp H--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHH
T ss_pred C--CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 2 34322 34455689999999999999999985 9999999999999999999999999886 57999999999999
Q ss_pred HhhcCeEEEE------eCCEEEEecChHHHhhc
Q 005205 657 AMQCDEIIVL------ENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 657 i~~aD~Iivl------~~G~Ive~Gth~eLl~~ 683 (709)
++.||+|++| ++|+|+..|+++|+++.
T Consensus 569 i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 569 MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp HHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred HHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 9999999999 79999999999999874
No 104
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.78 E-value=6.9e-20 Score=214.89 Aligned_cols=145 Identities=19% Similarity=0.193 Sum_probs=115.6
Q ss_pred CceEEEEeEEEEecC----CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-CCCCEEEECCEeCCCCCHHH
Q 005205 456 GGSIQFDNVHFSYLT----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-THSGSIRIDGQDICEVTLES 530 (709)
Q Consensus 456 ~g~I~f~nVsF~Y~~----~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-p~~G~I~idG~di~~~~~~~ 530 (709)
.+.|++++. ++|- ++++++|+||+ |++++|+|||||||||++++++|+.. |+.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 346999988 4552 36899999999 99999999999999999999999874 7888752 1 1
Q ss_pred hhcceEEEcCCCCCCch-hHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 005205 531 LRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 531 lR~~i~~V~Q~~~LF~g-TIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
.+..+++|+| +|.. |+.||+..| +|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g---------------------------------------~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGG---------------------------------------KSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC------C---------------------------------------CSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHhc---------------------------------------ccHHHHHHHHHHHH
Confidence 2567899887 5553 667766432 58899999999999
Q ss_pred h--ccCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHhcCCCeEEEEecCchHHhhc
Q 005205 610 F--LKAPPILLCDEA---TSALDSTTE-AEILNALKSLANNRTSIFIAHRLTTAMQC 660 (709)
Q Consensus 610 l--l~~p~ILILDEa---TSaLD~~tE-~~I~~~L~~l~~~~TvIvIaHRlsti~~a 660 (709)
+ +.+|+++||||| ||+||..+. ..+.+.|.+ .++|+|++||..+....|
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 9 999999999999 999999886 578888877 689999999998877655
No 105
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.77 E-value=1.7e-21 Score=204.65 Aligned_cols=130 Identities=12% Similarity=0.073 Sum_probs=99.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCC---
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS--- 559 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~--- 559 (709)
+++.++||+|+||||||||+++|.+++++. | . . ++.+.+|+||+++|+.++++|+.++.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 357899999999999999999999999864 2 0 1 5567777999999999999999886422
Q ss_pred CCHHHHHHHHHHHchHHHHHhCCCCcccc------ccCCCCCCChHHHHHHHHH--HHhccCCCEEEEeCCCCCCCHHH
Q 005205 560 ATEEEVYDAARRAAIHDTIMNFPAKYSTV------VGERGLKLSGGEKQRVALA--RAFLKAPPILLCDEATSALDSTT 630 (709)
Q Consensus 560 ~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~------vGe~G~~LSGGQrQRiaIA--RAll~~p~ILILDEaTSaLD~~t 630 (709)
.+....-++.+.+.+.+++..+++|++|. +.+.+.++||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 11111122334556788999999998875 4567889999999999998 666 999999999999999865
No 106
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.77 E-value=9.5e-19 Score=165.03 Aligned_cols=88 Identities=25% Similarity=0.322 Sum_probs=76.8
Q ss_pred Cccccc-----cCCCCCCChHHHHHHHHH------HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEe
Q 005205 584 KYSTVV-----GERGLKLSGGEKQRVALA------RAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIA 651 (709)
Q Consensus 584 G~dT~v-----Ge~G~~LSGGQrQRiaIA------RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIa 651 (709)
+|++.+ .....+||||||||++|| ||++.+|++|||||||++||+++.+.+.+.|+++. +++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 677765 234578999999999876 99999999999999999999999999999999875 478999999
Q ss_pred cCchHHhhcCeEEEE--eCCEE
Q 005205 652 HRLTTAMQCDEIIVL--ENGKV 671 (709)
Q Consensus 652 HRlsti~~aD~Iivl--~~G~I 671 (709)
|++.....||+|++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999777789999999 56643
No 107
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.77 E-value=6.2e-21 Score=220.10 Aligned_cols=189 Identities=18% Similarity=0.268 Sum_probs=124.9
Q ss_pred eEEEEeEEEEecCC-cccceee----------eeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-CCCEEEECCEeCCC
Q 005205 458 SIQFDNVHFSYLTE-RKILDGV----------SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICE 525 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~-~~vL~~i----------sl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-~~G~I~idG~di~~ 525 (709)
.|+++|+++.|+.. +++|+.+ ++++|. +||||+||||||||+++|+|++.| ++|.|+++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 58999999999732 3555544 477775 999999999999999999999988 89999999999632
Q ss_pred ---CCHHHhhcceEEEcCCCCCCc-hhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHH
Q 005205 526 ---VTLESLRKSIGVVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEK 601 (709)
Q Consensus 526 ---~~~~~lR~~i~~V~Q~~~LF~-gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQr 601 (709)
-....+|+.|+||+|++.+++ .||+|||.++. + .+.. .+..+| +
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------~------~~~~-----------~~~~~s---~ 134 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------N------AIAG-----------EGMGIS---H 134 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------H------HHHC-----------SSSCCC---S
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------H------HhcC-----------Cccccc---h
Confidence 224578999999999998865 59999986521 0 0111 111122 3
Q ss_pred HHHHHHHHhccCCCEEEEeCC------CCCCCHHHHHHHHHHHHHhcC---CCeEEEEecCchH--------Hhh-----
Q 005205 602 QRVALARAFLKAPPILLCDEA------TSALDSTTEAEILNALKSLAN---NRTSIFIAHRLTT--------AMQ----- 659 (709)
Q Consensus 602 QRiaIARAll~~p~ILILDEa------TSaLD~~tE~~I~~~L~~l~~---~~TvIvIaHRlst--------i~~----- 659 (709)
+++.++.+...+|+++++||| |++||+.+++.+.+.++++.+ +-++++++|.+.. ++.
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g 214 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEG 214 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSC
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcC
Confidence 455666666778999999999 999999999999999988532 4567888998752 222
Q ss_pred cCeEEEEeCCEEEEecChHHHh
Q 005205 660 CDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 660 aD~Iivl~~G~Ive~Gth~eLl 681 (709)
...|+|+.++.+++.|+.++++
T Consensus 215 ~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 215 DRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CSEEEEEECGGGSSSSSTTCCC
T ss_pred CceEEEecchhhcCcccHHHHH
Confidence 3568999999999999876554
No 108
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.76 E-value=2.3e-18 Score=205.50 Aligned_cols=165 Identities=17% Similarity=0.166 Sum_probs=122.3
Q ss_pred ceEEEEeEEEEecC----CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHH--------hcCCCCCCCEEEECCEeCC
Q 005205 457 GSIQFDNVHFSYLT----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLL--------FRSFDTHSGSIRIDGQDIC 524 (709)
Q Consensus 457 g~I~f~nVsF~Y~~----~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL--------~rly~p~~G~I~idG~di~ 524 (709)
+.|++++...-+-. ++.|++|++|++++|++++|+|||||||||+++.+ .|.|-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 46888876533311 35799999999999999999999999999999999 77777665432
Q ss_pred CCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 005205 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV 604 (709)
Q Consensus 525 ~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi 604 (709)
++++. .+|. .+|. .+.+ -..+|+|++|+.
T Consensus 702 ----------~~~~d---~i~~-------~ig~-----------------~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVGA-----------------GDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp ----------EECCS---EEEE-------ECC----------------------------------------CHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcCc-----------------hhhH--------------HHhHhhhHHHHH
Confidence 11110 0111 0110 0101 135788888888
Q ss_pred HHHHHh--ccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhc--CCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHH
Q 005205 605 ALARAF--LKAPPILLCDEATSALDSTTEAEIL-NALKSLA--NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDD 679 (709)
Q Consensus 605 aIARAl--l~~p~ILILDEaTSaLD~~tE~~I~-~~L~~l~--~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~e 679 (709)
.+|+++ +.+|+++||||||+++|+.....|. ..++.+. .++|+|++||.......||++..+++|+++..|+.++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 9999999999999999999887774 4445553 3899999999999999999999999999998887766
Q ss_pred H
Q 005205 680 L 680 (709)
Q Consensus 680 L 680 (709)
+
T Consensus 811 l 811 (934)
T 3thx_A 811 L 811 (934)
T ss_dssp E
T ss_pred E
Confidence 5
No 109
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.76 E-value=2.2e-20 Score=185.91 Aligned_cols=169 Identities=18% Similarity=0.252 Sum_probs=103.7
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCC-----CCCCCEEEE-------CCEeCCCC
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF-----DTHSGSIRI-------DGQDICEV 526 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly-----~p~~G~I~i-------dG~di~~~ 526 (709)
|+++|++|+|+ .++|++ |++++|.+++|+|++|||||||++.|+|.. .|+.|.+.+ ++..+-+.
T Consensus 4 l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 4 LNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp -------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred hhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 78999999996 478888 899999999999999999999999999998 889998765 23332221
Q ss_pred C-----------HHHhhcceEEEcCCCCCCch-hHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCC
Q 005205 527 T-----------LESLRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGL 594 (709)
Q Consensus 527 ~-----------~~~lR~~i~~V~Q~~~LF~g-TIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~ 594 (709)
+ .+.+++.++++.|+...+++ ++..|+..+.. ..++++.+.++. ..+|. -.++.+--
T Consensus 80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~-------~~~~~---~~v~nK~D 148 (210)
T 1pui_A 80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVD-------SNIAV---LVLLTKAD 148 (210)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH-------TTCCE---EEEEECGG
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-hhHHHHHHHHHH-------cCCCe---EEEEeccc
Confidence 1 13345555555554333322 22222222211 112223222221 12221 12355556
Q ss_pred CCChHHHHH-HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 005205 595 KLSGGEKQR-VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA 642 (709)
Q Consensus 595 ~LSGGQrQR-iaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~ 642 (709)
.+|+||||| +..+|+++++|+++++||||||+|.+.-..+++.|.++.
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 149 KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 789999999 899999999999999999999999999999999988754
No 110
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.76 E-value=9.8e-21 Score=193.64 Aligned_cols=181 Identities=15% Similarity=0.090 Sum_probs=111.1
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHh--cCCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF--RSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~--rly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
.+++++++++|+.-..+|.+ .|++|+.++|+||||||||||++.|+ ++.++.+|.+.+++.+..+ .....++.+
T Consensus 6 ~~~~~~i~tg~~~lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 81 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASF 81 (251)
T ss_dssp --CCCEECCSCTTTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTT
T ss_pred ccccceeecCCHhHHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHc
Confidence 36677888877643344443 79999999999999999999999999 7757788888888744221 122344567
Q ss_pred EEEcCCCCCCc-hhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 005205 536 GVVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP 614 (709)
Q Consensus 536 ~~V~Q~~~LF~-gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p 614 (709)
++++|+...+. -++.++...... ...++... .. ...+-++.++...+..-..+|
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------------------~~----~~~~~~~~~~~~~~~l~~~~p 136 (251)
T 2ehv_A 82 GWDFEKYEKEGKIAIVDGVSSVVG-LPSEEKFV--------------------LE----DRFNVDNFLRYIYRVVKAINA 136 (251)
T ss_dssp TCCHHHHHHTTSEEEEC--------------------------------------------CCHHHHHHHHHHHHHHTTC
T ss_pred CCChHHHhhcCCEEEEEccccccc-ccccccee--------------------cc----CcccHHHHHHHHHHHHHhhCC
Confidence 88887653221 122222211100 00000000 00 011234444434443345799
Q ss_pred CEEEEeCCCCCCC-----HHHHHHHHHHHHHhc-CCCeEEEEecCchHH----------hhc-CeEEEEe
Q 005205 615 PILLCDEATSALD-----STTEAEILNALKSLA-NNRTSIFIAHRLTTA----------MQC-DEIIVLE 667 (709)
Q Consensus 615 ~ILILDEaTSaLD-----~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti----------~~a-D~Iivl~ 667 (709)
++++|||||+.+| +...+.+.+-++.+. .|+|+|+++|.++.+ ..| |+|++|+
T Consensus 137 ~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 137 KRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp SEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 9999999999997 566666777766653 589999999999886 467 9999995
No 111
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.75 E-value=3.3e-18 Score=202.49 Aligned_cols=133 Identities=20% Similarity=0.314 Sum_probs=105.6
Q ss_pred CCCchhHHHHHHcCCC-CCCH----------HHHHHHHHHHchHHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHHh
Q 005205 543 VLFNDTIFHNIRYGRL-SATE----------EEVYDAARRAAIHDTIMNFPAKYSTV-VGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 543 ~LF~gTIreNI~~g~~-~~s~----------~ei~~A~~~a~l~~~I~~Lp~G~dT~-vGe~G~~LSGGQrQRiaIARAl 610 (709)
.+++.||.|++.|... ..+. +|+++-+ +++..+ |++.. +...-.+|||||||||+||+||
T Consensus 465 q~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl------~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL 536 (993)
T 2ygr_A 465 EVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL------GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQI 536 (993)
T ss_dssp CSSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH------HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH------HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHH
Confidence 4677899999988532 2233 1222111 223332 44422 3455678999999999999999
Q ss_pred ccC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchHHhhcCeEEEE------eCCEEEEecChHHHh
Q 005205 611 LKA--PPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL------ENGKVIEQGSHDDLL 681 (709)
Q Consensus 611 l~~--p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti~~aD~Iivl------~~G~Ive~Gth~eLl 681 (709)
..+ |++|||||||++||+..-+.+.+.|+++. .|.|+|+|+||+..++.||+|++| ++|+|+..|++++++
T Consensus 537 ~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~ 616 (993)
T 2ygr_A 537 GSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616 (993)
T ss_dssp TTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHH
T ss_pred hhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhh
Confidence 999 58999999999999999999999998875 589999999999999999999999 699999999999998
Q ss_pred hc
Q 005205 682 TK 683 (709)
Q Consensus 682 ~~ 683 (709)
+.
T Consensus 617 ~~ 618 (993)
T 2ygr_A 617 RN 618 (993)
T ss_dssp HC
T ss_pred hh
Confidence 75
No 112
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=9.5e-20 Score=200.05 Aligned_cols=166 Identities=18% Similarity=0.195 Sum_probs=103.2
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceE
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~ 536 (709)
+.|+++||+++|+ ++++++|+||+| +|||+||||||||++.|+|+..|..| .+|.++... ....++.++
T Consensus 10 ~~l~~~~l~~~y~-~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i~ 78 (418)
T 2qag_C 10 GYVGFANLPNQVY-RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQSK 78 (418)
T ss_dssp -----CCCCCCTT-TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEE
T ss_pred CcEEEEecceeEC-CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeEE
Confidence 4699999999995 468999999998 99999999999999999999887666 244443321 112246799
Q ss_pred EEcCCCCCC-chhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 005205 537 VVPQDTVLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP 615 (709)
Q Consensus 537 ~V~Q~~~LF-~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ 615 (709)
+++|++.++ .-||.||+.++.. .+.++.++. +.+++.. .++.+.+||++||||++++|+
T Consensus 79 ~v~q~~~~~~~Ltv~Dt~g~~~~-~~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 79 VLIKEGGVQLLLTIVDTPGFGDA-VDNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp CC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCCC-
T ss_pred EEEecCCcccceeeeechhhhhh-ccchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccCCC
Confidence 999998877 6799999998864 222333332 2233332 234466789999999999999
Q ss_pred ---EEEEeCCC-CCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHH
Q 005205 616 ---ILLCDEAT-SALDSTTEAEILNALKSLANNRTSIFIAHRLTTA 657 (709)
Q Consensus 616 ---ILILDEaT-SaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti 657 (709)
+|++|||| ++||+... .+++. +..+.++|+|.|+..++
T Consensus 139 ~~vlL~ldePt~~~L~~~d~-~~lk~---L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDI-EFMKR---LHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHH-HHHHH---HTTTSEEEEEEESTTSS
T ss_pred eeEEEEEecCcccCCCHHHH-HHHHH---HhccCcEEEEEEcccCc
Confidence 99999999 59998764 33333 44578899998887654
No 113
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.74 E-value=3.8e-19 Score=187.77 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=105.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC----HHHh--hcceEEEcCCCCCCch-hHHHHHHc
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESL--RKSIGVVPQDTVLFND-TIFHNIRY 555 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~----~~~l--R~~i~~V~Q~~~LF~g-TIreNI~~ 555 (709)
++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..| |..+++|+|++.++.. |++||+.+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 369999999999999999999999999999999999999987654 2333 4679999999988764 88899865
Q ss_pred CCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHH
Q 005205 556 GRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP--ILLCDEATSALDSTTEAE 633 (709)
Q Consensus 556 g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~--ILILDEaTSaLD~~tE~~ 633 (709)
+. ..+.+..+...++..+. .-..++..++||.+||||+..+|+ +|+|| |+++.|
T Consensus 180 ~~-------------~~~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------ 235 (304)
T 1rj9_A 180 MK-------------ARGYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------ 235 (304)
T ss_dssp HH-------------HHTCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------
T ss_pred HH-------------hCCCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------
Confidence 31 00111111111211111 112246778999999999999999 55566 454443
Q ss_pred HHHHHHHhc--CCCeEEEEecCchHH
Q 005205 634 ILNALKSLA--NNRTSIFIAHRLTTA 657 (709)
Q Consensus 634 I~~~L~~l~--~~~TvIvIaHRlsti 657 (709)
+.+.++++. .+.|+|+|||...+.
T Consensus 236 ~~~~~~~~~~~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 236 GLEQAKKFHEAVGLTGVIVTKLDGTA 261 (304)
T ss_dssp HHHHHHHHHHHHCCSEEEEECTTSSC
T ss_pred HHHHHHHHHHHcCCcEEEEECCcccc
Confidence 333333332 378999999986553
No 114
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.73 E-value=5.7e-19 Score=190.32 Aligned_cols=146 Identities=21% Similarity=0.201 Sum_probs=110.3
Q ss_pred EeEEEEecC-Ccccceeeee-------EeeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-CCEEEECCEeCCCCCHHHhh
Q 005205 462 DNVHFSYLT-ERKILDGVSF-------VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQDICEVTLESLR 532 (709)
Q Consensus 462 ~nVsF~Y~~-~~~vL~~isl-------~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~-~G~I~idG~di~~~~~~~lR 532 (709)
.+++|+|.+ ..+.|+++.+ .+++|+.++|+|||||||||++++|+|+++|+ +|.|...+.++ ++. ++
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 578888853 4567778776 78899999999999999999999999999997 57775544333 332 33
Q ss_pred cceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 005205 533 KSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLK 612 (709)
Q Consensus 533 ~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~ 612 (709)
...++++|...-.. ..+-.+ +|||||..
T Consensus 168 ~~~~~v~q~~~~~~------------~~~~~~----------------------------------------~La~aL~~ 195 (356)
T 3jvv_A 168 SKKCLVNQREVHRD------------TLGFSE----------------------------------------ALRSALRE 195 (356)
T ss_dssp CSSSEEEEEEBTTT------------BSCHHH----------------------------------------HHHHHTTS
T ss_pred ccccceeeeeeccc------------cCCHHH----------------------------------------HHHHHhhh
Confidence 45567777543211 011111 99999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCC
Q 005205 613 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENG 669 (709)
Q Consensus 613 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G 669 (709)
+|++++||||| |.++.+.+.++. ..|+|+|+++|..+.+..+||+++|..|
T Consensus 196 ~PdvillDEp~---d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 196 DPDIILVGEMR---DLETIRLALTAA---ETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp CCSEEEESCCC---SHHHHHHHHHHH---HTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred CcCEEecCCCC---CHHHHHHHHHHH---hcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 99999999999 788866655553 3589999999999999999999988544
No 115
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.71 E-value=1.8e-17 Score=160.31 Aligned_cols=78 Identities=31% Similarity=0.408 Sum_probs=71.7
Q ss_pred CCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEE--e
Q 005205 594 LKLSGGEKQRVALARAFL----KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVL--E 667 (709)
Q Consensus 594 ~~LSGGQrQRiaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl--~ 667 (709)
..||||||||++|||++. ++||++||||||++||+.+++.+.+.|+++.++.++|+|||+..++..||+|+.+ +
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~ 142 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMR 142 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEec
Confidence 579999999999999995 6679999999999999999999999999988889999999999999999999854 5
Q ss_pred CCEE
Q 005205 668 NGKV 671 (709)
Q Consensus 668 ~G~I 671 (709)
+|..
T Consensus 143 ~g~s 146 (173)
T 3kta_B 143 DGVS 146 (173)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 7754
No 116
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.69 E-value=1.2e-20 Score=188.70 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=95.3
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcC-CCCC
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG-RLSA 560 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g-~~~~ 560 (709)
.++|+++||+||||||||||+++|+|+++|+ | ..+++|+||.+.++.+..+|+... ....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999986 5 368999999999999988887421 1111
Q ss_pred CHHHHHHHHHHHchHHHHHhCCCC--ccccccCCCCCCChHHHHHHHHH-HHhccCCCEEEEeCCC
Q 005205 561 TEEEVYDAARRAAIHDTIMNFPAK--YSTVVGERGLKLSGGEKQRVALA-RAFLKAPPILLCDEAT 623 (709)
Q Consensus 561 s~~ei~~A~~~a~l~~~I~~Lp~G--~dT~vGe~G~~LSGGQrQRiaIA-RAll~~p~ILILDEaT 623 (709)
..+.+...+.+++..|+.| +++++.++|..+|+||+||+++| |+++.+++++++|||.
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 1122233445566666666 88899999999999999999999 9999999999999984
No 117
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.69 E-value=5.2e-19 Score=186.95 Aligned_cols=163 Identities=18% Similarity=0.223 Sum_probs=80.3
Q ss_pred EeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC-CCCCCCEEEECCEeCCCCCHHHhhcceEEEcC
Q 005205 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS-FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ 540 (709)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl-y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 540 (709)
+||++.|. ++.++++++|+| +|||+||+|||||++.|+|. ..|++| |.++|.++.. .. -++.+++++|
T Consensus 2 ~~l~~~~~-~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~--~~~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV--QIEASTVEIE 70 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC
T ss_pred CCCcceEC-CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc--eEeeEEEEec
Confidence 47888885 468999999998 99999999999999999998 889999 9999987754 11 1467899999
Q ss_pred CCCCC-chhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 005205 541 DTVLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLC 619 (709)
Q Consensus 541 ~~~LF-~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILIL 619 (709)
++.++ .-||.||..++... ..++-++. +.+++.. -++..+ .++|||||||+++|||+. +|++
T Consensus 71 ~~~~~~~ltv~Dt~g~~~~~-~~~e~~~~-----l~~~l~~---~~~~~~----~~~sgg~rqrv~~ara~~----ll~l 133 (301)
T 2qnr_A 71 ERGVKLRLTVVDTPGYGDAI-NCRDCFKT-----IISYIDE---QFERYL----HDESGLNRRHIIDNRVHC----CFYF 133 (301)
T ss_dssp ---CCEEEEEEEEC------------CTT-----HHHHHHH---HHHHHH----HHHTSSCCTTCCCCCCCE----EEEE
T ss_pred CCCcccCcchhhhhhhhhhc-CcHHHHHH-----HHHHHHH---HHHHHH----HHhCHHhhhhhhhhhhhh----eeee
Confidence 87654 55899988876431 11111111 1111111 112222 358999999999999985 9999
Q ss_pred eCCCCC-CCHHHHHHHHHHHHHhcC--CCeEEEEecCchH
Q 005205 620 DEATSA-LDSTTEAEILNALKSLAN--NRTSIFIAHRLTT 656 (709)
Q Consensus 620 DEaTSa-LD~~tE~~I~~~L~~l~~--~~TvIvIaHRlst 656 (709)
||||++ ||+... +.++++.+ +.++|+..|++.+
T Consensus 134 dePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 134 ISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp ECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred ecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 999986 999874 33333333 4677777898754
No 118
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.67 E-value=1.7e-17 Score=167.19 Aligned_cols=167 Identities=13% Similarity=0.039 Sum_probs=113.9
Q ss_pred Ccccceeeee-EeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhc---ceEEEcCCCCCCc
Q 005205 471 ERKILDGVSF-VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK---SIGVVPQDTVLFN 546 (709)
Q Consensus 471 ~~~vL~~isl-~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~---~i~~V~Q~~~LF~ 546 (709)
+-+.|+++.. .+++|+.++|+||+|||||||++.|++...++.|.|.+.+.+. +...+++ .+++.+|+...
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-- 82 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE-- 82 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT--
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh--
Confidence 4567889888 8999999999999999999999999998888888888765433 2333322 23333332210
Q ss_pred hhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCC
Q 005205 547 DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPP--ILLCDEATS 624 (709)
Q Consensus 547 gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~--ILILDEaTS 624 (709)
+++..-+. ... . .. +. + +- ...|.+|.++...+.+...+|+ ++|+||||+
T Consensus 83 ----~~~~~~~~-~~~-~-------------~~--~~-~---~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 83 ----KKLIIIDA-LMK-E-------------KE--DQ-W---SL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp ----TTEEEEEC-CC--------------------CT-T---BC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred ----CCEEEEec-ccc-c-------------cC--ce-e---ee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 01111100 000 0 00 00 0 11 1338999998888877778999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHhc--CCCeEEEEecCc--------hHHh-hcCeEEEEeCCE
Q 005205 625 AL--DSTTEAEILNALKSLA--NNRTSIFIAHRL--------TTAM-QCDEIIVLENGK 670 (709)
Q Consensus 625 aL--D~~tE~~I~~~L~~l~--~~~TvIvIaHRl--------sti~-~aD~Iivl~~G~ 670 (709)
.+ |+.....+.+.|+++. .++|+|+++|.. ..+. .||+|++|++.+
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 88 9988888888887764 478999999998 3344 599999998653
No 119
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.66 E-value=6.7e-18 Score=170.02 Aligned_cols=142 Identities=13% Similarity=0.146 Sum_probs=107.0
Q ss_pred eEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC--CCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhH-----HHH
Q 005205 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTI-----FHN 552 (709)
Q Consensus 480 l~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p--~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTI-----reN 552 (709)
-..++|+.++|+||||||||||+++|+|+++| ..|+|.+++.+.+. ..++.++|++|++.+|...+ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 35799999999999999999999999999986 78999999877653 24678999999999887643 356
Q ss_pred HHcCCCC--CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 005205 553 IRYGRLS--ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTT 630 (709)
Q Consensus 553 I~~g~~~--~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~t 630 (709)
+.+.... .+.++ ++.++..++++||| ||+++
T Consensus 87 ~~~~~~~yg~~~~~------------------------------------------v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 87 AEVFGNYYGTSREA------------------------------------------IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EEETTEEEEEEHHH------------------------------------------HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHHHhccCCCCHHH------------------------------------------HHHHHhcCCeEEEE-----ECHHH
Confidence 5442110 11222 23333446999999 99999
Q ss_pred HHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEeCCEEEEecChHHHhhc
Q 005205 631 EAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK 683 (709)
Q Consensus 631 E~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~Gth~eLl~~ 683 (709)
.+.+.+.+. +++|+++++|+++.++. |+ +++| .|+.+++.++
T Consensus 120 ~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 120 AQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp HHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHHH
T ss_pred HHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHHH
Confidence 999998875 58899999999998877 43 6777 6788888654
No 120
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.66 E-value=1.2e-16 Score=160.03 Aligned_cols=152 Identities=18% Similarity=0.183 Sum_probs=99.4
Q ss_pred cccceeeee-EeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHH
Q 005205 472 RKILDGVSF-VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (709)
Q Consensus 472 ~~vL~~isl-~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIr 550 (709)
-+.|+++.. .+++|+.++|+|++|||||||++.+++ .+..+.++++..+ ..+... ++
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~------------------~~ 63 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPER------------------LV 63 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHH------------------HH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHH------------------HH
Confidence 356777665 799999999999999999999999999 4344444444321 112222 22
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChH--HHHHHHHHHHhccC-CCEEEEeCCCCCCC
Q 005205 551 HNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGG--EKQRVALARAFLKA-PPILLCDEATSALD 627 (709)
Q Consensus 551 eNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGG--QrQRiaIARAll~~-p~ILILDEaTSaLD 627 (709)
+.... ...+.+++ ...+ .+. .+|++ |+|+++.+|+++++ |+++|+||||+.+|
T Consensus 64 ~~~~~--~~~~~~~~------------~~~~------~~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 64 QMAET--RGLNPEEA------------LSRF------ILF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HHHHT--TTCCHHHH------------HHHE------EEE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred HHHHh--cCCChHHH------------hhcE------EEE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 22111 01122221 1111 011 22333 47899999999986 99999999999999
Q ss_pred HHHH--------HHHHHHHHHhcC--CCeEEEEecCch-------------HH-hhcCeEEEEeCC
Q 005205 628 STTE--------AEILNALKSLAN--NRTSIFIAHRLT-------------TA-MQCDEIIVLENG 669 (709)
Q Consensus 628 ~~tE--------~~I~~~L~~l~~--~~TvIvIaHRls-------------ti-~~aD~Iivl~~G 669 (709)
+..+ ..+.+.|+++.+ ++|+|+++|... .+ ..||.|++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 8543 335555666543 799999999865 33 469999999865
No 121
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.64 E-value=1.2e-16 Score=190.04 Aligned_cols=156 Identities=13% Similarity=0.172 Sum_probs=104.4
Q ss_pred ceEEEEeEEEEec--------CCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH
Q 005205 457 GSIQFDNVHFSYL--------TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL 528 (709)
Q Consensus 457 g~I~f~nVsF~Y~--------~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~ 528 (709)
+.|++++.. +| +++.|++|+||++++|++++|+|||||||||+++.+.++.-
T Consensus 639 ~~i~i~~~r--HP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~------------------ 698 (918)
T 3thx_B 639 RKIVIKNGR--HPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI------------------ 698 (918)
T ss_dssp CEEEEEEEC--CHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH------------------
T ss_pred CcEEEEecc--chhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH------------------
Confidence 367777753 33 24689999999999999999999999999999999864310
Q ss_pred HHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 529 ESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 529 ~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
+.+.-.+||++..-+ ++.++| |.. .++.|.+ ..+-..+|+|++|+..|+|
T Consensus 699 --~aq~g~~vpa~~~~i--~~~d~i-~~~--------------ig~~d~l-----------~~~~stfs~em~~~~~il~ 748 (918)
T 3thx_B 699 --MAQIGSYVPAEEATI--GIVDGI-FTR--------------MGAADNI-----------YKGRSTFMEELTDTAEIIR 748 (918)
T ss_dssp --HHHHTCCBSSSEEEE--ECCSEE-EEE--------------C---------------------CCHHHHHHHHHHHHH
T ss_pred --HhhcCccccchhhhh--hHHHHH-HHh--------------CChHHHH-----------HHhHHHhhHHHHHHHHHHH
Confidence 000011233221100 000001 000 0111111 1122578999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhc--CCCeEEEEecCchHHhhcCeE
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEIL-NALKSLA--NNRTSIFIAHRLTTAMQCDEI 663 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I~-~~L~~l~--~~~TvIvIaHRlsti~~aD~I 663 (709)
+ +.+|+++||||||++||+.....|. ..++.+. .++|+|++||.+.....||+.
T Consensus 749 ~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 749 K-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp H-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred h-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 9 8999999999999999999888887 4455542 489999999999888777654
No 122
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.64 E-value=4.5e-19 Score=188.96 Aligned_cols=152 Identities=14% Similarity=0.180 Sum_probs=111.3
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC--------CCCCCEEEECCEeCCCCC---------------HHHhhcceEEE---c
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSF--------DTHSGSIRIDGQDICEVT---------------LESLRKSIGVV---P 539 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly--------~p~~G~I~idG~di~~~~---------------~~~lR~~i~~V---~ 539 (709)
+.++|+|++|||||||++.|+|++ .|+.|+|.|||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 889999999999998764 45778889988 7
Q ss_pred CCCC-CCchhHHHHHHcCCCCCCHHHHHHHH-HHHchHHHHHhCCCCccccccC-----CCCCCChHHHHHHHHHHHhcc
Q 005205 540 QDTV-LFNDTIFHNIRYGRLSATEEEVYDAA-RRAAIHDTIMNFPAKYSTVVGE-----RGLKLSGGEKQRVALARAFLK 612 (709)
Q Consensus 540 Q~~~-LF~gTIreNI~~g~~~~s~~ei~~A~-~~a~l~~~I~~Lp~G~dT~vGe-----~G~~LSGGQrQRiaIARAll~ 612 (709)
|++. .|+.++.||+.+++|. .+.+.. ......+. ..+ ++.-|.++- .-.++||||+||...+|+++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~----~~~~~~~~~~~~~~~-~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPG----PIIQTFFSHEVLCQR-YLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHH----HHHHHHHHSHHHHHH-EEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHH----HHHHHHhcCccccCe-EEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 8876 4788999999988652 222221 00000000 000 011111211 001589999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCc
Q 005205 613 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRL 654 (709)
Q Consensus 613 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRl 654 (709)
+|+++ ||| +.+.+.|+++.++.|+++++|+.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 99987 888 67788888877889999999974
No 123
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=3e-17 Score=179.48 Aligned_cols=181 Identities=16% Similarity=0.176 Sum_probs=118.9
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcE--EEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcce
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKS--VAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~--vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i 535 (709)
.+++++ +++|++ .+ |+++||++++|+. +|||||||||||||+++|+|+. ++|.++...+....++.+
T Consensus 16 ~l~~~~-~~~y~~-~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i 84 (427)
T 2qag_B 16 TVPLAG-HVGFDS-LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSN 84 (427)
T ss_dssp -CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEE
T ss_pred eEEEee-EEEECC-ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeE
Confidence 466677 788854 45 9999999999999 9999999999999999999984 566666655555567789
Q ss_pred EEEcCCCCCC-chhHHHHHHcCCCCCCHHHHHHHHH---HHchHHHHHhC-------CCCcccc----c---cCCCCCCC
Q 005205 536 GVVPQDTVLF-NDTIFHNIRYGRLSATEEEVYDAAR---RAAIHDTIMNF-------PAKYSTV----V---GERGLKLS 597 (709)
Q Consensus 536 ~~V~Q~~~LF-~gTIreNI~~g~~~~s~~ei~~A~~---~a~l~~~I~~L-------p~G~dT~----v---Ge~G~~LS 597 (709)
+||+|++.++ +-|+.||+.||.. .+.+.-|+.+. ...+.+++... +..-|+. | -+.+..|+
T Consensus 85 ~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~ 163 (427)
T 2qag_B 85 TYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK 163 (427)
T ss_dssp EEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C
T ss_pred EEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC
Confidence 9999999887 5699999999863 44433222211 11233334332 2223433 2 34556677
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hc-CCCeEEEEecC
Q 005205 598 GGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKS-LA-NNRTSIFIAHR 653 (709)
Q Consensus 598 GGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~-l~-~~~TvIvIaHR 653 (709)
-.+ +.|+|+|-.+++|+++|++|..|.+.--..+.+.+++ +. .|.+++.|+..
T Consensus 164 ~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 164 SLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 666 8999999999999999999999988766677777775 43 46778887753
No 124
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.64 E-value=3.4e-18 Score=167.77 Aligned_cols=161 Identities=15% Similarity=0.096 Sum_probs=102.0
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCC
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSA 560 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~ 560 (709)
.+++|+.++|+|+||||||||+++|++. |+.|.|.+||.++.+.. .-++.++|++|++. .+.|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHH---
Confidence 5789999999999999999999999998 78999999997764322 11345788888765 5678999986531
Q ss_pred CHHHHHHHHHHHchHHHHHhCCC--Ccccc--ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 005205 561 TEEEVYDAARRAAIHDTIMNFPA--KYSTV--VGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILN 636 (709)
Q Consensus 561 s~~ei~~A~~~a~l~~~I~~Lp~--G~dT~--vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~ 636 (709)
... .+ .+-...++.+.. +++.. .+.....+|+||+||+++||++.++|+++ +|++..+.+.+
T Consensus 77 ---~~~--~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GRY--AK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HHH--HH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HHH--hc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 000 00 000000011000 11100 02234579999999999999999999976 58877777776
Q ss_pred HHHHhcCCCeEEEEecCchHHhhcCeE
Q 005205 637 ALKSLANNRTSIFIAHRLTTAMQCDEI 663 (709)
Q Consensus 637 ~L~~l~~~~TvIvIaHRlsti~~aD~I 663 (709)
.++.+....++++.++..+.-+.+|+|
T Consensus 143 ~~~~l~~~~~~~i~t~~~~~~~~~~~i 169 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSGKDTDQALQSA 169 (191)
T ss_dssp HTTCCGGGGGGEEECTTCCTTTTTTTT
T ss_pred HHhccCcccccEEECCCCCHHHHHHHH
Confidence 665543222334445443333334443
No 125
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.61 E-value=1e-15 Score=159.79 Aligned_cols=151 Identities=16% Similarity=0.196 Sum_probs=102.9
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHH-HcCCCC
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNI-RYGRLS 559 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI-~~g~~~ 559 (709)
.+++|+.++|+||+|||||||++.+++... .|.+. .|.+..+ +..+.|+..+... ..+.+++ .++. +
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 489999999999999999999999998654 57663 3544321 3468888877643 3344443 2332 2
Q ss_pred CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC--CCCHHHH---HHH
Q 005205 560 ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATS--ALDSTTE---AEI 634 (709)
Q Consensus 560 ~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTS--aLD~~tE---~~I 634 (709)
..+++..++++... +....+.....||+||+|++ |+++++|+++||||||+ ++|..+. ..+
T Consensus 94 ~~~~~~~~~~~~l~-----------l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADGLL-----------IQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHHEE-----------ECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCceE-----------EeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 33443333333322 22233455678999998865 78899999999999999 9997554 677
Q ss_pred HHHHHHhc--CCCeEEEEecCchHH
Q 005205 635 LNALKSLA--NNRTSIFIAHRLTTA 657 (709)
Q Consensus 635 ~~~L~~l~--~~~TvIvIaHRlsti 657 (709)
.+.|+++. .++|+|+|+|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 77787763 489999999987654
No 126
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.60 E-value=3.3e-16 Score=184.83 Aligned_cols=165 Identities=16% Similarity=0.138 Sum_probs=111.1
Q ss_pred ceEEEEeEEEEec------CCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-CCCCEEEECCEeCCCCCHH
Q 005205 457 GSIQFDNVHFSYL------TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-THSGSIRIDGQDICEVTLE 529 (709)
Q Consensus 457 g~I~f~nVsF~Y~------~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-p~~G~I~idG~di~~~~~~ 529 (709)
+.|++++.. +| +++.+++|+||+ ++|++++|+|||||||||++|+++|+.- .+.|. .+..
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA---- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----
Confidence 357777643 44 245799999999 9999999999999999999999999742 23331 1111
Q ss_pred HhhcceEEEcCCCCCCch-hHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 530 SLRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 530 ~lR~~i~~V~Q~~~LF~g-TIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
-+..+++++| +|.. ++.||+..+ . ..+|+|+++ ++.+.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~----------------------------~--------stf~~e~~~-~~~il 681 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG----------------------------R--------STFMVEMTE-TANIL 681 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh----------------------------h--------hhhhHHHHH-HHHHH
Confidence 1245677766 4432 444444321 1 235666664 44444
Q ss_pred HhccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhc--CCCeEEEEecCchHHhhcCeEEEEeCCEEEEec
Q 005205 609 AFLKAPPILLCDEATSALDSTTEAEI-LNALKSLA--NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQG 675 (709)
Q Consensus 609 All~~p~ILILDEaTSaLD~~tE~~I-~~~L~~l~--~~~TvIvIaHRlsti~~aD~Iivl~~G~Ive~G 675 (709)
..+.+|+++||||||+++|+.....+ .+.++.+. .++|+|++||.......||++..+++|++....
T Consensus 682 ~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEE
T ss_pred HhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEE
Confidence 56899999999999888888665554 44555553 379999999999988889988778888776443
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.58 E-value=1.2e-15 Score=155.10 Aligned_cols=148 Identities=16% Similarity=0.246 Sum_probs=95.3
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhc--CCCC-----CCCEEEECCEeCC-CCCHHHhhcceEEEcCCCCCCchhHHHH
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFR--SFDT-----HSGSIRIDGQDIC-EVTLESLRKSIGVVPQDTVLFNDTIFHN 552 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~r--ly~p-----~~G~I~idG~di~-~~~~~~lR~~i~~V~Q~~~LF~gTIreN 552 (709)
-|++|+.++|+||+|||||||++.|++ ..+| ..|.+++++.+.- .-....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 5665 6789999986521 11133455567776654 5677
Q ss_pred HHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH---
Q 005205 553 IRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDST--- 629 (709)
Q Consensus 553 I~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~--- 629 (709)
+.+..+ .+.++..+.++. +.+.+.. .+|+++|+||+|+.+|++
T Consensus 93 ~~~~~~-~~~~~~~~~~~~--~~~~~~~-------------------------------~~~~lliiD~~~~~~~~~~~~ 138 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQLLYQ--ASAMMVE-------------------------------SRYALLIVDSATALYRTDYSG 138 (243)
T ss_dssp EEEEEC-CSHHHHHHHHHH--HHHHHHH-------------------------------SCEEEEEEETSSGGGC-----
T ss_pred eEEEec-CCHHHHHHHHHH--HHHHHhc-------------------------------CCceEEEEeCchHHHHHHhcC
Confidence 765443 233333332221 1111111 689999999999999986
Q ss_pred ----HHH-----HHHHHHHHhc--CCCeEEEEecCchHHh--------------------hcCeEEEEeCC
Q 005205 630 ----TEA-----EILNALKSLA--NNRTSIFIAHRLTTAM--------------------QCDEIIVLENG 669 (709)
Q Consensus 630 ----tE~-----~I~~~L~~l~--~~~TvIvIaHRlsti~--------------------~aD~Iivl~~G 669 (709)
+++ .+...|.++. .++|+|+++|-..... .||.|++|++|
T Consensus 139 ~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 139 RGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 433 3444454443 3899999999654332 58999999875
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.55 E-value=1.6e-17 Score=178.19 Aligned_cols=179 Identities=15% Similarity=0.182 Sum_probs=121.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC----HHHhhcc
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESLRKS 534 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~----~~~lR~~ 534 (709)
|+++|+++.|. ...+|+++||++++|++++|+|++|||||||++.|+|++.|++|+|.+.|.|+.... ....|..
T Consensus 30 ie~~~~~~~~~-~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 30 AESRRADHRAA-VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HTCSSHHHHHH-HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HeeCCcccccC-hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 55667777774 357999999999999999999999999999999999999999999999999885433 1345778
Q ss_pred eEEEcCCCCCCc----------h---hHHHHHHc---CC--------CCC--CHHHHHHHHHH-------------HchH
Q 005205 535 IGVVPQDTVLFN----------D---TIFHNIRY---GR--------LSA--TEEEVYDAARR-------------AAIH 575 (709)
Q Consensus 535 i~~V~Q~~~LF~----------g---TIreNI~~---g~--------~~~--s~~ei~~A~~~-------------a~l~ 575 (709)
+++|+|++.+|. | +++|.+.. +. |.. ++..+.+.++. ..+.
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~ 188 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK 188 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence 999999999985 2 23333210 00 000 11111110000 0000
Q ss_pred HHHHhCCCCcc-ccccC-CCCCCChHHHHHHHHHHHhcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 005205 576 DTIMNFPAKYS-TVVGE-RGLKLSGGEKQRVALARAFLK------APPILLCDEATSALDSTTEAEILNALKSLA 642 (709)
Q Consensus 576 ~~I~~Lp~G~d-T~vGe-~G~~LSGGQrQRiaIARAll~------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~ 642 (709)
+.+...|+-+- +.+.- ....+|+|++|+++.|++++. +|+++. |||+|.+.-..+.+.|.+..
T Consensus 189 ~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 189 KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp TTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 01112222100 01110 113478999999999999998 688886 99999999999999987753
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.51 E-value=9.2e-15 Score=161.77 Aligned_cols=150 Identities=21% Similarity=0.297 Sum_probs=104.9
Q ss_pred ceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC----HHH--hhcceEEEcCCCCCC-ch
Q 005205 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LES--LRKSIGVVPQDTVLF-ND 547 (709)
Q Consensus 475 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~----~~~--lR~~i~~V~Q~~~LF-~g 547 (709)
-+++||++++|++++|||+||||||||++.|+|++.|++|+|.++|.|+.... +.. .|+.|+||+|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 35789999999999999999999999999999999999999999988775431 122 477899999998765 56
Q ss_pred hHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCC-C-----CCCChHHHHHHHHHHHhccC-CC-EEEE
Q 005205 548 TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGER-G-----LKLSGGEKQRVALARAFLKA-PP-ILLC 619 (709)
Q Consensus 548 TIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~-G-----~~LSGGQrQRiaIARAll~~-p~-ILIL 619 (709)
|+++||.++.. .|+|..+-+. | .++-.--+|++.++|++..+ |. +|+.
T Consensus 363 tV~e~l~~a~~------------------------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 363 VIFDAIQAAKA------------------------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHH------------------------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHh------------------------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 99999987531 1222222111 1 11112235889999988654 53 4544
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEec
Q 005205 620 DEATSALDSTTEAEILNALKSLANNRTSIFIAH 652 (709)
Q Consensus 620 DEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaH 652 (709)
.+||++.|.... .+.+++ .-+.|.+++||
T Consensus 419 LDattGq~al~~---ak~f~~-~~~itgvIlTK 447 (503)
T 2yhs_A 419 IDASTGQNAVSQ---AKLFHE-AVGLTGITLTK 447 (503)
T ss_dssp EEGGGTHHHHHH---HHHHHH-HTCCSEEEEEC
T ss_pred ecCcccHHHHHH---HHHHHh-hcCCCEEEEEc
Confidence 558877655432 222332 13789999999
No 130
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.48 E-value=1.8e-16 Score=178.60 Aligned_cols=174 Identities=14% Similarity=0.183 Sum_probs=124.5
Q ss_pred cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCc--hhH
Q 005205 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN--DTI 549 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~--gTI 549 (709)
.++++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--.++ -+++++++.|+.. .. .|.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeeccc-ccCCcCH
Confidence 35789999999999999999999999999999999999999999999986522222 1457888888776 33 377
Q ss_pred HHHHHcC---CC------CCCHHHHHHHHHHHc-------------hHHHHHhC---CCCcccccc-------CCCCCCC
Q 005205 550 FHNIRYG---RL------SATEEEVYDAARRAA-------------IHDTIMNF---PAKYSTVVG-------ERGLKLS 597 (709)
Q Consensus 550 reNI~~g---~~------~~s~~ei~~A~~~a~-------------l~~~I~~L---p~G~dT~vG-------e~G~~LS 597 (709)
++++... +| +..++|...+++.+. +.+.+.+| |.|....+. .....+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 8877533 33 466677766666553 22333332 334333222 1234579
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEE--EecCchHHhh-cC
Q 005205 598 GGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIF--IAHRLTTAMQ-CD 661 (709)
Q Consensus 598 GGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIv--IaHRlsti~~-aD 661 (709)
||||||.++|. + | |++||+++.+.+.+.|.++. .++|+++ +||.++.+.. |+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 99999987751 1 6 99999988877777666654 3688875 8999998754 54
No 131
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.48 E-value=1.6e-16 Score=151.66 Aligned_cols=88 Identities=13% Similarity=0.141 Sum_probs=73.1
Q ss_pred EEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcC
Q 005205 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ 540 (709)
Q Consensus 461 f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q 540 (709)
-+|++++|. ++.+++++||+|++|++++|+||+|||||||+++|+|++ |++|+|.++|.++.+. ...+ . +|+|
T Consensus 10 ~~~~~~~~g-~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~-~--~~~q 82 (158)
T 1htw_A 10 DEFSMLRFG-KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA-G--KMIY 82 (158)
T ss_dssp SHHHHHHHH-HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET-T--EEEE
T ss_pred CHHHHHHHH-HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC-C--ccee
Confidence 345566774 357999999999999999999999999999999999999 9999999999887421 1112 2 7999
Q ss_pred CCCCCchhHHHHHHc
Q 005205 541 DTVLFNDTIFHNIRY 555 (709)
Q Consensus 541 ~~~LF~gTIreNI~~ 555 (709)
++.+|.-|+.||+.+
T Consensus 83 ~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 83 HFDLYRLADPEELEF 97 (158)
T ss_dssp EEECTTCSCTTHHHH
T ss_pred ccccccCCcHHHHHH
Confidence 999997799999853
No 132
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.47 E-value=1e-16 Score=176.16 Aligned_cols=141 Identities=16% Similarity=0.133 Sum_probs=96.9
Q ss_pred EEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC----CCHHHhhcce
Q 005205 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----VTLESLRKSI 535 (709)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~----~~~~~lR~~i 535 (709)
+++|++|.|+ ..++|+++ + .++|+.++|+|||||||||++++|+|+++|++|+|.++|.++.. ++...+++.+
T Consensus 145 ~l~~Lg~~~~-~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~ 221 (418)
T 1p9r_A 145 DLHSLGMTAH-NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRV 221 (418)
T ss_dssp CGGGSCCCHH-HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGG
T ss_pred CHHHcCCCHH-HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcccc
Confidence 3344444432 23467777 4 38999999999999999999999999999999999999988742 1122345566
Q ss_pred EEEc---------CCCCCC--c-----hhHHHHHHcCCC--------C-CCHHHHHHHHHHHchHHHHHhCCCCcccccc
Q 005205 536 GVVP---------QDTVLF--N-----DTIFHNIRYGRL--------S-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590 (709)
Q Consensus 536 ~~V~---------Q~~~LF--~-----gTIreNI~~g~~--------~-~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vG 590 (709)
++++ |+|.++ . .|+++|+.++.. . .+..+..+.+...++.++.
T Consensus 222 g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~------------ 289 (418)
T 1p9r_A 222 DMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL------------ 289 (418)
T ss_dssp TBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH------------
T ss_pred CcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH------------
Confidence 6655 888763 2 489999876421 1 1123333344444433221
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEE
Q 005205 591 ERGLKLSGGEKQRVALARAFLKAPPILL 618 (709)
Q Consensus 591 e~G~~LSGGQrQRiaIARAll~~p~ILI 618 (709)
....|||||+|| ||||++.+|++..
T Consensus 290 -~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 -ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp -HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred -HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 235799999999 9999999999875
No 133
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=2.3e-14 Score=154.17 Aligned_cols=138 Identities=15% Similarity=0.207 Sum_probs=81.4
Q ss_pred cEEEEEcCCCccHHHHHHHHhc-CCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCC-chhHHHHHHcCCCCCCHH
Q 005205 486 KSVAIVGTSGSGKSTILRLLFR-SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTIFHNIRYGRLSATEE 563 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~r-ly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF-~gTIreNI~~g~~~~s~~ 563 (709)
..+.|+||+|+||||+++.|++ ++.|+.|.|.++|.+...... -+..+++++|++++. +.+- .+. ...+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~ 107 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MGN--NDRI 107 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cCC--cchH
Confidence 3499999999999999999999 899999999999988764333 377899999988752 2110 111 1112
Q ss_pred HHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC
Q 005205 564 EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN 643 (709)
Q Consensus 564 ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~ 643 (709)
.+.+.++.+ ... .+++..+ .||| +..+|+++|||||++ ||+++...+.+.|++..+
T Consensus 108 ~~~~~i~~~-----~~~--~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 108 VIQELLKEV-----AQM--EQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp HHHHHHHHH-----TTT--TC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHH-----HHh--ccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC
Confidence 333333322 111 1122211 5676 778999999999999 999999999999999878
Q ss_pred CCeEEEEecCchH
Q 005205 644 NRTSIFIAHRLTT 656 (709)
Q Consensus 644 ~~TvIvIaHRlst 656 (709)
++++|++||+++.
T Consensus 164 ~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 164 NIRLIMVCDSMSP 176 (354)
T ss_dssp TEEEEEEESCSCS
T ss_pred CCEEEEEeCCHHH
Confidence 8999999999764
No 134
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.46 E-value=1.6e-16 Score=155.80 Aligned_cols=162 Identities=19% Similarity=0.112 Sum_probs=108.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCC-chhHHHHHHcCCCCCCHH
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTIFHNIRYGRLSATEE 563 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF-~gTIreNI~~g~~~~s~~ 563 (709)
|+.++|+||||||||||++.|++ |.+|.+.+||.++.+. ..+++++|+...+ ..|+++|+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 68999999999999999999997 7789999998665432 2467788866433 44777777532
Q ss_pred HHHHHHHHHchHHHHHhCCCCccccc----cCC----CCCC--ChHHHHHHHHHH------HhccCCCEEEEeCCCCCCC
Q 005205 564 EVYDAARRAAIHDTIMNFPAKYSTVV----GER----GLKL--SGGEKQRVALAR------AFLKAPPILLCDEATSALD 627 (709)
Q Consensus 564 ei~~A~~~a~l~~~I~~Lp~G~dT~v----Ge~----G~~L--SGGQrQRiaIAR------All~~p~ILILDEaTSaLD 627 (709)
++. +.. .|.+..+ ++. -..+ |+|++|++.++. +++++|+...+|+ .+|
T Consensus 66 -----~~~-----~~~---~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld 129 (189)
T 2bdt_A 66 -----TVN-----FLL---AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMG 129 (189)
T ss_dssp -----HHH-----HHH---TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------C
T ss_pred -----HHH-----HHh---cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCC
Confidence 000 000 1111111 100 0123 888888888888 8888898888884 799
Q ss_pred HHHHHHHHHHHHHhc-CCCeEEEEecC-chHHhh-cCeEEEEeCCEEEEecChHHHh
Q 005205 628 STTEAEILNALKSLA-NNRTSIFIAHR-LTTAMQ-CDEIIVLENGKVIEQGSHDDLL 681 (709)
Q Consensus 628 ~~tE~~I~~~L~~l~-~~~TvIvIaHR-lsti~~-aD~Iivl~~G~Ive~Gth~eLl 681 (709)
++..+. .+.++.+. .+.|+|..+|. +++++. ||+|+ ++|+++..|+.+-|-
T Consensus 130 ~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 130 ERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp GGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 987777 77777764 35789999999 888765 99998 999999999987664
No 135
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.45 E-value=2.5e-13 Score=147.65 Aligned_cols=74 Identities=28% Similarity=0.369 Sum_probs=68.7
Q ss_pred CCCChHHHHHH------HHHHHhccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEE
Q 005205 594 LKLSGGEKQRV------ALARAFLKA-PPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVL 666 (709)
Q Consensus 594 ~~LSGGQrQRi------aIARAll~~-p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl 666 (709)
..|||||+||+ ++|||+..+ |++||||||||+||+++...+.+.|+++.+++|+|+|||+......||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 57999999987 678999999 99999999999999999999999999876678999999999877789999999
Q ss_pred e
Q 005205 667 E 667 (709)
Q Consensus 667 ~ 667 (709)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 136
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.44 E-value=5.7e-14 Score=149.61 Aligned_cols=163 Identities=16% Similarity=0.131 Sum_probs=109.5
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH----Hhhcc--eEEEcCCCCCCc-hhHHHHH
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE----SLRKS--IGVVPQDTVLFN-DTIFHNI 553 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~----~lR~~--i~~V~Q~~~LF~-gTIreNI 553 (709)
..++|++++|||||||||||+++.|+|++.|++|+|.++|.|+...... .++++ +.+++|+..++. .|++|||
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 4478999999999999999999999999999999999999999876633 34444 559999998875 5899999
Q ss_pred HcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccc-cCCCC-CC-ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 005205 554 RYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVV-GERGL-KL-SGGEKQRVALARAFLKAPPILLCDEATSALDSTT 630 (709)
Q Consensus 554 ~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~v-Ge~G~-~L-SGGQrQRiaIARAll~~p~ILILDEaTSaLD~~t 630 (709)
.++.. .++|..+ ..-|. .. ..=-++.-.++|++..++++++||.+|. .|...
T Consensus 205 ~~~~~------------------------~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~ 259 (328)
T 3e70_C 205 QHAKA------------------------RGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE 259 (328)
T ss_dssp HHHHH------------------------HTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH
T ss_pred HHHHh------------------------ccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH
Confidence 76420 0122211 11111 10 1112344459999999999999996665 33322
Q ss_pred HHHHHHHHHHhcCCCeEEEEecCchHH----------hhcCeEEEEeCCEEE
Q 005205 631 EAEILNALKSLANNRTSIFIAHRLTTA----------MQCDEIIVLENGKVI 672 (709)
Q Consensus 631 E~~I~~~L~~l~~~~TvIvIaHRlsti----------~~aD~Iivl~~G~Iv 672 (709)
. .+.+.+ ..+.|.|++||--.+. ...-.|..+-.|+-+
T Consensus 260 ~---~~~~~~-~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 260 Q---ARQFNE-AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp H---HHHHHH-HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred H---HHHHHH-hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 1 122322 2478999999944321 123467777777654
No 137
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.43 E-value=4.5e-14 Score=151.40 Aligned_cols=123 Identities=13% Similarity=0.075 Sum_probs=83.1
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-CCCCEEEEC-CEeCCCCCHHHhhcceEEEcCCCCCCch-hH
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-THSGSIRID-GQDICEVTLESLRKSIGVVPQDTVLFND-TI 549 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-p~~G~I~id-G~di~~~~~~~lR~~i~~V~Q~~~LF~g-TI 549 (709)
.-++++++. .+|++++|+|+||||||||+++|+|+.. |..|+|.++ |.+.. ...+..+++|+|++.+++. |+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 457777775 4899999999999999999999999999 999999997 76653 2456789999999998865 89
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 550 reNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
+|+-. ...+.+++.+. +.++++.+ |+.-.....-.+|| ||+||++||++++
T Consensus 279 ~e~~l---~~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 279 REFGL---WHLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HTCCC---CCCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHhhh---cCCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 98632 23455555332 23333332 33333344556899 9999999999863
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.42 E-value=1.2e-13 Score=150.99 Aligned_cols=147 Identities=18% Similarity=0.272 Sum_probs=98.5
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHH--HhcCCCCCCC-----EEEECCEeC-CCCCHHHhhcceEEEcCCCCCCchhHHHH
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRL--LFRSFDTHSG-----SIRIDGQDI-CEVTLESLRKSIGVVPQDTVLFNDTIFHN 552 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~L--L~rly~p~~G-----~I~idG~di-~~~~~~~lR~~i~~V~Q~~~LF~gTIreN 552 (709)
-|++|+.++|+||||||||||++. +.++.+|+.| .|++|+.+. +......+++.+++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 689999999999999999999994 4577766544 899998763 22223445566777665 67888
Q ss_pred HHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHHH
Q 005205 553 IRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL--KAPPILLCDEATSALDSTT 630 (709)
Q Consensus 553 I~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll--~~p~ILILDEaTSaLD~~t 630 (709)
+.+..+ .+.++..+.++ -+++++ .+|+++|+||+|+.+|++.
T Consensus 247 i~~~~~-~~~~~~~~~l~-----------------------------------~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARA-YNADHQLRLLD-----------------------------------AAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEEC-CSHHHHHHHHH-----------------------------------HHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEecc-CChHHHHHHHH-----------------------------------HHHHHHHhcCCceEEecchhhhCchhh
Confidence 877654 22222222221 111211 4799999999999999765
Q ss_pred H------------HHHHHHHHHhc--CCCeEEEEecCchH-------------------Hh-hcCeEEEEeCCE
Q 005205 631 E------------AEILNALKSLA--NNRTSIFIAHRLTT-------------------AM-QCDEIIVLENGK 670 (709)
Q Consensus 631 E------------~~I~~~L~~l~--~~~TvIvIaHRlst-------------------i~-~aD~Iivl~~G~ 670 (709)
. ..+.+.|+++. .+.|+|+|+|-.++ +. .||.+++|++|+
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 4 45666676664 37999999998322 23 379999998764
No 139
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.41 E-value=4e-15 Score=152.30 Aligned_cols=157 Identities=13% Similarity=0.082 Sum_probs=106.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHh---cCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCc-hhHHHHHHcC---
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLF---RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-DTIFHNIRYG--- 556 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~---rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~-gTIreNI~~g--- 556 (709)
++++++|+|++|||||||+++|+ |+..|+.|+|.++|.+.. ..+...+..++|++.++. .|+.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999886532 234556677788776654 5899998641
Q ss_pred ----------CCCCCHHHHHHHHHHHchHHHHHhCCC-C------------ccccccCCCCCCChHHHHHHHHHHHh-cc
Q 005205 557 ----------RLSATEEEVYDAARRAAIHDTIMNFPA-K------------YSTVVGERGLKLSGGEKQRVALARAF-LK 612 (709)
Q Consensus 557 ----------~~~~s~~ei~~A~~~a~l~~~I~~Lp~-G------------~dT~vGe~G~~LSGGQrQRiaIARAl-l~ 612 (709)
.| .+.++... +..+.. + ++-....+...||| |+ ||+ +.
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~----------l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~ 163 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEA----------LDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN 163 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHH----------HHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS
T ss_pred cCCCeEEEECCC-CCHHHHHH----------HHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC
Confidence 11 12221111 111110 1 11111223357898 66 888 99
Q ss_pred CCCEEEEe----CCCCCCCHHHHHHHHHHHHHhcCCC-eEEEEecCchHHhhcCeEEEEeC
Q 005205 613 APPILLCD----EATSALDSTTEAEILNALKSLANNR-TSIFIAHRLTTAMQCDEIIVLEN 668 (709)
Q Consensus 613 ~p~ILILD----EaTSaLD~~tE~~I~~~L~~l~~~~-TvIvIaHRlsti~~aD~Iivl~~ 668 (709)
+|++++|| |||++||..+++.+.+.|+++.+.. ++ +......++++++|.
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v------~~~~~~~~~~~~id~ 218 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPV------IELYKSRGVLHQFSG 218 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHH------HHHHHHTTCEEEEEC
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHHHHhHHHH------HHHHhhcCcEEEECC
Confidence 99999999 9999999999999999887764321 11 112334567777764
No 140
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.37 E-value=2.7e-13 Score=127.98 Aligned_cols=92 Identities=16% Similarity=0.229 Sum_probs=71.0
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCC--EEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHH
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG--SIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G--~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIr 550 (709)
.+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+++++.++...
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------ 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------ 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC------------------------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH------------------------
Confidence 356666 8999999999999999999999999987 57 666666443221
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 005205 551 HNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTT 630 (709)
Q Consensus 551 eNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~t 630 (709)
+++.+|++||||||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 3467899999999998 55555
Q ss_pred HHHHHHHHHHhc-CCCe-EEEEecC
Q 005205 631 EAEILNALKSLA-NNRT-SIFIAHR 653 (709)
Q Consensus 631 E~~I~~~L~~l~-~~~T-vIvIaHR 653 (709)
++.+++.++++. +++| +|+++|+
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCC
Confidence 888888887664 4577 7777775
No 141
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.37 E-value=5.1e-16 Score=157.39 Aligned_cols=147 Identities=18% Similarity=0.254 Sum_probs=64.1
Q ss_pred cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHh-cCC------------CCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF-RSF------------DTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~-rly------------~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
....+++||++++|++++|+||||||||||+++|+ +++ +|..|++ +|++....+...+... .
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~ 88 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---C 88 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---H
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---h
Confidence 35678999999999999999999999999999999 999 6666654 5544433344333322 2
Q ss_pred cCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCCh--HHHHHH-HHHH-HhccCC
Q 005205 539 PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSG--GEKQRV-ALAR-AFLKAP 614 (709)
Q Consensus 539 ~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSG--GQrQRi-aIAR-All~~p 614 (709)
.++.+++.+++.+|+ ||.+. +++.++++.. ....+. ..+.| .-+++. .-++ .++..|
T Consensus 89 ~~~~~~~~~~~~~~~-~~~~~---~~i~~~~~~~------------~~vild---~~~~g~~~~~~~~~~~~~~v~v~~~ 149 (231)
T 3lnc_A 89 SNGEIIEHAEVFGNF-YGVPR---KNLEDNVDKG------------VSTLLV---IDWQGAFKFMEMMREHVVSIFIMPP 149 (231)
T ss_dssp HTTCEEEEEEETTEE-EEEEC---TTHHHHHHHT------------CEEEEE---CCHHHHHHHHHHSGGGEEEEEEECS
T ss_pred hcCceehhhhhcccc-CCCCH---HHHHHHHHcC------------CeEEEE---cCHHHHHHHHHhcCCCeEEEEEECC
Confidence 233444344444443 44332 2343333321 111110 00111 114444 2222 346788
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 005205 615 PILLCDEATSALDSTTEAEILNALKSLA 642 (709)
Q Consensus 615 ~ILILDEaTSaLD~~tE~~I~~~L~~l~ 642 (709)
+..+|||.+++.|..+++.+.+.|++..
T Consensus 150 ~~~~l~~Rl~~R~~~~~~~i~~rl~~~~ 177 (231)
T 3lnc_A 150 SMEELRRRLCGRRADDSEVVEARLKGAA 177 (231)
T ss_dssp CHHHHHHC--------------CHHHHH
T ss_pred cHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 8899999999999999999887776543
No 142
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.31 E-value=1.1e-14 Score=146.66 Aligned_cols=129 Identities=23% Similarity=0.299 Sum_probs=108.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC---CCCCCEEEE--------CCEeCC-CCCHHHhhcceEEEcCCC------CCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSF---DTHSGSIRI--------DGQDIC-EVTLESLRKSIGVVPQDT------VLF 545 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly---~p~~G~I~i--------dG~di~-~~~~~~lR~~i~~V~Q~~------~LF 545 (709)
.+.+++|+|+|||||||++++|.+.| .++.|.|.. +|.++. +....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 788999988 788776 356778999999999986 567
Q ss_pred chhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCcccccc-CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 005205 546 NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG-ERGLKLSGGEKQRVALARAFLKAPPILLCDEATS 624 (709)
Q Consensus 546 ~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vG-e~G~~LSGGQrQRiaIARAll~~p~ILILDEaTS 624 (709)
..++.+++. ++++.+++..+..|++|...+.+.++.+. ++|.-++|+ .++++++++++++|+.+++.
T Consensus 84 ~~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 84 GEDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp TEECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred CeeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 778888863 67899999999999999998888777663 567888887 56778899999999988764
No 143
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.31 E-value=2.1e-14 Score=152.10 Aligned_cols=139 Identities=16% Similarity=0.223 Sum_probs=97.4
Q ss_pred ceEEEEeEEEEecCCcccceeeeeEe-------------------eCCcEEEEEcCCCccHHHHHHHHhcCCC--CCCCE
Q 005205 457 GSIQFDNVHFSYLTERKILDGVSFVV-------------------PAGKSVAIVGTSGSGKSTILRLLFRSFD--THSGS 515 (709)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I-------------------~~Ge~vaIVG~SGsGKSTL~~LL~rly~--p~~G~ 515 (709)
+.|+++||++.|. ++++++|+.+ ++|+++||+|+||||||||+++|.|++. |++|+
T Consensus 36 ~~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 36 EDLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TTCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred cccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 4699999999993 7999999998 9999999999999999999999999998 99999
Q ss_pred EEE---CCEeCCCCCHHHhhcceEEEcCCCCCC-chhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccC
Q 005205 516 IRI---DGQDICEVTLESLRKSIGVVPQDTVLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGE 591 (709)
Q Consensus 516 I~i---dG~di~~~~~~~lR~~i~~V~Q~~~LF-~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe 591 (709)
|.+ ||.+.. . ..++.+++| |+.-++ .-|+.+|+.+.. ++. .-.+.| ..| -||...
T Consensus 113 i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~------~l~------~~~~~i-~~P-~~~~~~-- 171 (308)
T 1sq5_A 113 VELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKFVS------DLK------SGVPNV-TAP-VYSHLI-- 171 (308)
T ss_dssp EEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHHHH------HHT------TTCSCE-EEC-CEETTT--
T ss_pred EEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHHHH------HHh------CCCCce-ecc-cccccc--
Confidence 999 997742 2 456778999 766553 336777765421 000 000000 112 122211
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 005205 592 RGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDS 628 (709)
Q Consensus 592 ~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~ 628 (709)
+ +|++.+.+.+.+|+++|+|.+..-.|.
T Consensus 172 -------~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 172 -------Y--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp -------T--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred -------c--CcccccceecCCCCEEEECchhhCCCc
Confidence 1 334333456678999999999887763
No 144
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.30 E-value=7.5e-13 Score=128.49 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=76.1
Q ss_pred eeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCE-EEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCC
Q 005205 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS-IRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR 557 (709)
Q Consensus 479 sl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~-I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~ 557 (709)
+|++++|+.++|+||+|+|||||++.+++.+.|.+|. +.+ +
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~-------------------~------------------- 73 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-------------------F------------------- 73 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE-------------------E-------------------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE-------------------E-------------------
Confidence 5778899999999999999999999999998877763 111 0
Q ss_pred CCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHH
Q 005205 558 LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATS-ALDSTTEAEILN 636 (709)
Q Consensus 558 ~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTS-aLD~~tE~~I~~ 636 (709)
+-+++.+.++.+ ... + ... -....+.+|++||||||++ ++|+.....+.+
T Consensus 74 ---~~~~~~~~~~~~-----~~~---~--------~~~----------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ 124 (180)
T 3ec2_A 74 ---DTKDLIFRLKHL-----MDE---G--------KDT----------KFLKTVLNSPVLVLDDLGSERLSDWQRELISY 124 (180)
T ss_dssp ---EHHHHHHHHHHH-----HHH---T--------CCS----------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHH
T ss_pred ---EHHHHHHHHHHH-----hcC---c--------hHH----------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHH
Confidence 111221111111 000 0 000 1112345999999999996 899999988888
Q ss_pred HHHHhc-CCCeEEEEecCch
Q 005205 637 ALKSLA-NNRTSIFIAHRLT 655 (709)
Q Consensus 637 ~L~~l~-~~~TvIvIaHRls 655 (709)
.+++.. +++|+|++||...
T Consensus 125 ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 125 IITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHHcCCCEEEEcCCCh
Confidence 887665 6899999999864
No 145
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.27 E-value=2.3e-13 Score=143.71 Aligned_cols=115 Identities=15% Similarity=0.085 Sum_probs=80.0
Q ss_pred eEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEE---CCEeCCCCCHHHhh-cceEEEcCCCCCC------chhH
Q 005205 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI---DGQDICEVTLESLR-KSIGVVPQDTVLF------NDTI 549 (709)
Q Consensus 480 l~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~i---dG~di~~~~~~~lR-~~i~~V~Q~~~LF------~gTI 549 (709)
+++.+|++++|+||||||||||++.|+ +.+|++|+|.+ +|.++..... ..+ +.+|+|+|+|-+. .-|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 456689999999999999999999999 99999999999 9988876542 223 3799999999652 4578
Q ss_pred HHHH--HcC---------C---C-CCCHHHHHHHHHHHchHH-HHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 005205 550 FHNI--RYG---------R---L-SATEEEVYDAARRAAIHD-TIMNFPAKYSTVVGERGLKLSGGEKQRVALAR 608 (709)
Q Consensus 550 reNI--~~g---------~---~-~~s~~ei~~A~~~a~l~~-~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIAR 608 (709)
||+ .|+ . + .-..+.+.++++..++.+ ...+.| ..|||.++++++|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 898 443 1 1 112356777777777754 333322 358998888999997
No 146
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.25 E-value=5.5e-15 Score=153.95 Aligned_cols=145 Identities=18% Similarity=0.242 Sum_probs=104.7
Q ss_pred cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCC-CCCc-hhH
Q 005205 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT-VLFN-DTI 549 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~-~LF~-gTI 549 (709)
+.+++++++++++| ++|+||+|||||||++.|++.+.+ |.|.++|.++.+......++.+++++|++ ..+. -++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 45889999999999 999999999999999999999887 79999999987766667788899999985 3332 356
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-----
Q 005205 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATS----- 624 (709)
Q Consensus 550 reNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTS----- 624 (709)
.|||....+.-..++. + ...+. +.+.-..|||||+||..|++|+..+|++| |||+.
T Consensus 109 ~Deid~~~~~r~~~~~-~-----~~~~~-----------~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRf 169 (274)
T 2x8a_A 109 FDEVDALCPRRSDRET-G-----ASVRV-----------VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRL 169 (274)
T ss_dssp EETCTTTCC---------------CTTH-----------HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSS
T ss_pred eehhhhhhcccCCCcc-h-----HHHHH-----------HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccC
Confidence 6777654322111110 0 00011 11112358999999999999999999975 99964
Q ss_pred -------CCCHHHHHHHHHHHH
Q 005205 625 -------ALDSTTEAEILNALK 639 (709)
Q Consensus 625 -------aLD~~tE~~I~~~L~ 639 (709)
.-|.+....|++.+.
T Consensus 170 d~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 170 DKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp CEEEECCSCCHHHHHHHHHHHT
T ss_pred CeEEEeCCcCHHHHHHHHHHHH
Confidence 347777777776653
No 147
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.21 E-value=3.5e-12 Score=126.01 Aligned_cols=139 Identities=17% Similarity=0.167 Sum_probs=89.7
Q ss_pred eeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCch-hHHHHHHcCC
Q 005205 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYGR 557 (709)
Q Consensus 479 sl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~g-TIreNI~~g~ 557 (709)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|++|++.+|.. +..+|+.+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57889999999999999999999999999973 688999888777666668889999999988865 4444443211
Q ss_pred C------CCCHHHHHHHHHHH----------chHHHHHhCCCCc------------cccccCCCCCCChHHHHHHHHHHH
Q 005205 558 L------SATEEEVYDAARRA----------AIHDTIMNFPAKY------------STVVGERGLKLSGGEKQRVALARA 609 (709)
Q Consensus 558 ~------~~s~~ei~~A~~~a----------~l~~~I~~Lp~G~------------dT~vGe~G~~LSGGQrQRiaIARA 609 (709)
. ..+.+++.++++.. ++.......|+.+ ...+-++|..-....++|++-++.
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~ 156 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALARE 156 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHH
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 0 11234455544432 2333344444431 112335665555667888888876
Q ss_pred hc---cCCCEEEEeC
Q 005205 610 FL---KAPPILLCDE 621 (709)
Q Consensus 610 ll---~~p~ILILDE 621 (709)
.. +.++.+|.++
T Consensus 157 ~~~~~~~~d~vi~n~ 171 (205)
T 3tr0_A 157 EMAHYKEFDYLVVND 171 (205)
T ss_dssp HHTTGGGCSEEEECS
T ss_pred HHhcccCCCEEEECC
Confidence 55 3467776654
No 148
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.19 E-value=6e-13 Score=136.76 Aligned_cols=111 Identities=23% Similarity=0.213 Sum_probs=87.9
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHh---cCCCCCCCEEE--------ECCEeC-CCCCHHHhhcceEEEcC
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF---RSFDTHSGSIR--------IDGQDI-CEVTLESLRKSIGVVPQ 540 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~---rly~p~~G~I~--------idG~di-~~~~~~~lR~~i~~V~Q 540 (709)
+++++.+ ++|++++|+|||||||||++++|+ |++.|++|.|+ .+|.++ .+.....+++.+++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3445543 899999999999999999999999 99999999999 999998 45678899999999995
Q ss_pred ------CCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCC
Q 005205 541 ------DTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593 (709)
Q Consensus 541 ------~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G 593 (709)
..++++.++.+||. .+++.+++..+..++.|......+...++++|
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~-------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~ 146 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR-------TETVGNTASQAAAFPRVREALLRRQRAFREAP 146 (252)
T ss_dssp EETTEEEEEETTEECTTGGG-------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSS
T ss_pred cCCCCceEEECCeehhHHHH-------HHHHHHHHHHhcccHHHHHHHHHHHHHHhhCC
Confidence 45678888888875 36777788888888888776666666565544
No 149
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.18 E-value=3.2e-12 Score=134.81 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=70.4
Q ss_pred eEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEE---CCEeCCCCCHHHhhcceEEEcCCCC-------------
Q 005205 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI---DGQDICEVTLESLRKSIGVVPQDTV------------- 543 (709)
Q Consensus 480 l~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~i---dG~di~~~~~~~lR~~i~~V~Q~~~------------- 543 (709)
|++.+|++++|+||||||||||+++|+|+..|++|+|.+ +|.++.........+.+++|+|+|-
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 567789999999999999999999999999999999999 9998876542221246999999985
Q ss_pred ---CCc-hhHHHHHHcCCC---CCCHHHHHHHHHHHch-HHHHHhCCC
Q 005205 544 ---LFN-DTIFHNIRYGRL---SATEEEVYDAARRAAI-HDTIMNFPA 583 (709)
Q Consensus 544 ---LF~-gTIreNI~~g~~---~~s~~ei~~A~~~a~l-~~~I~~Lp~ 583 (709)
+|. -|+ ||+.|+.- ...+..+.++++..++ .+...+.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 343 377 99988531 2234678899999998 466666553
No 150
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.17 E-value=2e-11 Score=128.23 Aligned_cols=142 Identities=15% Similarity=0.090 Sum_probs=99.8
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
+.++++++.|++. + ++++|+ +|++++++|++|+||||++..|++++.+..|+|.+.+.|++.-...+
T Consensus 77 ~~~~~l~~~~~~~-~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~-------- 143 (295)
T 1ls1_A 77 TVYEALKEALGGE-A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE-------- 143 (295)
T ss_dssp HHHHHHHHHTTSS-C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH--------
T ss_pred HHHHHHHHHHCCC-C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH--------
Confidence 5567777777532 2 678888 99999999999999999999999999999999999887765311110
Q ss_pred cCCCCCCchhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 005205 539 PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILL 618 (709)
Q Consensus 539 ~Q~~~LF~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILI 618 (709)
++...++.. |++-... +..-.-.+-||.+|+++...+++++|
T Consensus 144 -------------------------ql~~~~~~~-----------~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~vi 185 (295)
T 1ls1_A 144 -------------------------QLRLLGEKV-----------GVPVLEV--MDGESPESIRRRVEEKARLEARDLIL 185 (295)
T ss_dssp -------------------------HHHHHHHHH-----------TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred -------------------------HHHHhcccC-----------CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 000011111 1211111 11223445689999999889999999
Q ss_pred EeCC-CCCCCHHHHHHHHHHHHHhcCCCeEEEEe
Q 005205 619 CDEA-TSALDSTTEAEILNALKSLANNRTSIFIA 651 (709)
Q Consensus 619 LDEa-TSaLD~~tE~~I~~~L~~l~~~~TvIvIa 651 (709)
+||| ++++|...-..+.+..+....+.+++++.
T Consensus 186 iDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 186 VDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 9999 99999988888777776665566655553
No 151
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.16 E-value=1.7e-12 Score=142.44 Aligned_cols=153 Identities=18% Similarity=0.150 Sum_probs=92.9
Q ss_pred ceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHH
Q 005205 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIR 554 (709)
Q Consensus 475 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~ 554 (709)
-++++|++++|+.++|||++|||||||++.|++..+ .+.+.+.. .+...+++|+|+.. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ft-----Tl~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFT-----TLSPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTC-----SSCCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccc-----eecceeeEEEecCc-ceEEEEeccc
Confidence 478999999999999999999999999999999743 34444433 33456778877651 1112333222
Q ss_pred cCCC-----CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 005205 555 YGRL-----SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDST 629 (709)
Q Consensus 555 ~g~~-----~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~ 629 (709)
+... .... +..+..+.+ +..+.- +|.. .+.-.+||+||+||.++||+|..+|.||+| +.+|..
T Consensus 215 li~~a~~~~~L~~-~fl~~~era--~~lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGL-EFLRHIART--RVLLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCH-HHHHHHTSS--SEEEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhH-HHHHHHHHH--HhhhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 2110 0111 111111111 111110 1110 111246999999999999999999999999 889987
Q ss_pred HHHHHHHHHHHhc--CCCeEEEEec
Q 005205 630 TEAEILNALKSLA--NNRTSIFIAH 652 (709)
Q Consensus 630 tE~~I~~~L~~l~--~~~TvIvIaH 652 (709)
+. ...+.+.+.. .+.+++.||.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 66 3334443322 3567777763
No 152
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.11 E-value=8.3e-11 Score=123.57 Aligned_cols=138 Identities=15% Similarity=0.122 Sum_probs=94.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCH
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATE 562 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~ 562 (709)
++|+++++||++||||||++..|++.+.|++| +++.++.+|++ ..+..|++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHHH-------
Confidence 47999999999999999999999999998888 35778888873 3333443321
Q ss_pred HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 005205 563 EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA 642 (709)
Q Consensus 563 ~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~ 642 (709)
.++.. .+| -... ..++..+.+|+++ ++|+++|+| |+++|+..+..+.+..+-+.
T Consensus 156 -----~~~~~-------gl~----~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 156 -----YAELL-------QAP----LEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp -----HHTTT-------TCC----CCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred -----HHHhc-------CCC----eEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 11111 112 1111 1235567888875 999999999 99999877765554332222
Q ss_pred ---CCCeEEEE--ecCchHHhh-cCeEEEEeCCEEEE
Q 005205 643 ---NNRTSIFI--AHRLTTAMQ-CDEIIVLENGKVIE 673 (709)
Q Consensus 643 ---~~~TvIvI--aHRlsti~~-aD~Iivl~~G~Ive 673 (709)
.+.+++++ +|....+.. +|++..++.|.|+-
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23456666 898777665 78776777788875
No 153
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.10 E-value=2.4e-12 Score=125.82 Aligned_cols=127 Identities=21% Similarity=0.383 Sum_probs=69.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCC-------------CCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHH
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSFD-------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly~-------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIre 551 (709)
|++++|+||||||||||+++|+++++ |.+|++ +|.+....+.+.+++.+ .|+.+++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 888986 88888777777777654 3677777777777
Q ss_pred HHHcCCCCCCHHHHHHHHHH----------HchHHHHHh--------------CCCCccccccCCCCCCChHHHHHHHHH
Q 005205 552 NIRYGRLSATEEEVYDAARR----------AAIHDTIMN--------------FPAKYSTVVGERGLKLSGGEKQRVALA 607 (709)
Q Consensus 552 NI~~g~~~~s~~ei~~A~~~----------a~l~~~I~~--------------Lp~G~dT~vGe~G~~LSGGQrQRiaIA 607 (709)
|+ ||.+ .+++.++++. .++. .+.. -++-+...+-+||..-....+||++-|
T Consensus 76 ~~-yg~~---~~~i~~~l~~g~~~il~~~~~g~~-~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~ 150 (186)
T 3a00_A 76 NY-YGST---VASVKQVSKSGKTCILDIDMQGVK-SVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAA 150 (186)
T ss_dssp EE-EEEE---HHHHHHHHHTTCEEEEECCHHHHH-HHHTCGGGCCEEEEEECSCC-------------------------
T ss_pred ee-ccCc---HHHHHHHHHcCCeEEEEEcHHHHH-HHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 76 6654 3445444443 1221 1222 124566677788888778888999999
Q ss_pred HHhc-----cCCCEEEEeC
Q 005205 608 RAFL-----KAPPILLCDE 621 (709)
Q Consensus 608 RAll-----~~p~ILILDE 621 (709)
+.-+ +.++.+|..+
T Consensus 151 ~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 151 QAELAYAETGAHDKVIVND 169 (186)
T ss_dssp --------CCCCSEEEECS
T ss_pred HHHHHhhcccCCcEEEECc
Confidence 8765 5567777665
No 154
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.10 E-value=7.4e-11 Score=124.32 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=73.2
Q ss_pred eeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCC
Q 005205 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR 557 (709)
Q Consensus 478 isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~ 557 (709)
++++.++|++++|+|++||||||+++.|++++.++.|+|.+.+.|.... ...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHH-------
Confidence 4556788999999999999999999999999999999999987765321 111
Q ss_pred CCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH---HHHHHhccCCCEEEEeCCCC
Q 005205 558 LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV---ALARAFLKAPPILLCDEATS 624 (709)
Q Consensus 558 ~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi---aIARAll~~p~ILILDEaTS 624 (709)
+++...++..+ +| . + ...|||+.|++ +|+||+.++|+++|+|||..
T Consensus 149 -----eqL~~~~~~~g-------l~----~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 -----EQLKIWGERVG-------AT----V-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----HHHHHHHHHHT-------CE----E-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----HHHHHHHHHcC-------Cc----E-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 22222222222 22 1 1 13579999999 99999999999999999984
No 155
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.09 E-value=3.1e-11 Score=134.14 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=64.0
Q ss_pred EEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH--------Hh
Q 005205 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE--------SL 531 (709)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~--------~l 531 (709)
++.++++.. .++|+|+||+|++ +++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+
T Consensus 8 ~l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~~~ 83 (483)
T 3euj_A 8 KFRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKL 83 (483)
T ss_dssp EEEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGGGS
T ss_pred ceeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHHhc
Confidence 456665532 3579999999999 99999999999999999999999999999999999998765533 22
Q ss_pred hcceEEEcCCCC
Q 005205 532 RKSIGVVPQDTV 543 (709)
Q Consensus 532 R~~i~~V~Q~~~ 543 (709)
+..+.++.+++.
T Consensus 84 ~~~~~~~~~~~~ 95 (483)
T 3euj_A 84 KAGVCYAVLETV 95 (483)
T ss_dssp CSSEEEEEEEEE
T ss_pred CCCceEEEEehh
Confidence 344567766643
No 156
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.99 E-value=3.2e-13 Score=144.65 Aligned_cols=156 Identities=15% Similarity=0.192 Sum_probs=98.9
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCC-------cEEEEEcCCCccHHHHHHHHhcCC----CCCCCEEEECCEeCCCCC
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAG-------KSVAIVGTSGSGKSTILRLLFRSF----DTHSGSIRIDGQDICEVT 527 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~G-------e~vaIVG~SGsGKSTL~~LL~rly----~p~~G~I~idG~di~~~~ 527 (709)
++.++++..|. .+.+++++++.|++| +.++|+||+|+|||||+++|++.. .|.+|.+..++.|+..+.
T Consensus 19 lr~~~l~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 19 LRPKSLDEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp TSCSSGGGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred cCCccHHHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 33445555554 457899999999887 899999999999999999999988 678888887776654332
Q ss_pred HHHhhcceEEEcCCCCCCchhHHHHHHcC--CCCCC----HHHHHHHHHHHchHHHHHhCCC-CccccccCCCCCCChHH
Q 005205 528 LESLRKSIGVVPQDTVLFNDTIFHNIRYG--RLSAT----EEEVYDAARRAAIHDTIMNFPA-KYSTVVGERGLKLSGGE 600 (709)
Q Consensus 528 ~~~lR~~i~~V~Q~~~LF~gTIreNI~~g--~~~~s----~~ei~~A~~~a~l~~~I~~Lp~-G~dT~vGe~G~~LSGGQ 600 (709)
....+..|.+++|...++. |+.|++... ....+ .++ ..+. +.+ .+|. ++.. ...+-..||+|+
T Consensus 98 ~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~---~~~~--i~~---~l~~~~li~-at~~~~~Ls~~l 167 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGP---SAKS--IRI---DIQPFTLVG-ATTRSGLLSSPL 167 (334)
T ss_dssp HHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC-----------------------CCCEEEE-EESCGGGSCHHH
T ss_pred HHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCc---cccc--ccc---cCCCeEEEE-ecCCcccCCHHH
Confidence 1112567999999888775 888887422 10000 000 0011 111 1221 2211 112334799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 005205 601 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL 641 (709)
Q Consensus 601 rQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l 641 (709)
|||++++ ..||+.+...+.+.|++.
T Consensus 168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~ 192 (334)
T 1in4_A 168 RSRFGII----------------LELDFYTVKELKEIIKRA 192 (334)
T ss_dssp HTTCSEE----------------EECCCCCHHHHHHHHHHH
T ss_pred HHhcCce----------------eeCCCCCHHHHHHHHHHH
Confidence 9998655 566666677777666654
No 157
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.99 E-value=7.8e-13 Score=137.77 Aligned_cols=137 Identities=18% Similarity=0.219 Sum_probs=97.8
Q ss_pred EEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEc
Q 005205 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (709)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 539 (709)
+++++...|. ...+++++++++++| ++|+||+|||||||++.|++... .|.|.++|.++.+......++.+++++
T Consensus 51 ~l~~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 125 (278)
T 1iy2_A 51 ELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 125 (278)
T ss_dssp HHHHHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHH
Confidence 4556666664 356899999999999 99999999999999999999875 899999998876555555667788888
Q ss_pred CCCC-CC-chhHHHHH-HcCCCCC-----CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 540 QDTV-LF-NDTIFHNI-RYGRLSA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 540 Q~~~-LF-~gTIreNI-~~g~~~~-----s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
|++. .+ .-++.||| .++.... ..++..+.+ ..++. .|||||+||..+++|+.
T Consensus 126 ~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll~---------------~lsgg~~~~~~i~~a~t 185 (278)
T 1iy2_A 126 ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAAT 185 (278)
T ss_dssp HHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHHH---------------HHTTCCTTCCEEEEEEE
T ss_pred HHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHHH---------------HHhCCCCCCCEEEEEec
Confidence 8763 33 34667777 3432111 112222221 12221 37899999999999999
Q ss_pred cCCCEEEEeCCC
Q 005205 612 KAPPILLCDEAT 623 (709)
Q Consensus 612 ~~p~ILILDEaT 623 (709)
.+|++ ||++.
T Consensus 186 ~~p~~--ld~~l 195 (278)
T 1iy2_A 186 NRPDI--LDPAL 195 (278)
T ss_dssp SCTTS--SCHHH
T ss_pred CCchh--CCHhH
Confidence 99987 67664
No 158
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.96 E-value=6.5e-11 Score=116.47 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=68.4
Q ss_pred eEeeCCcEEEEEcCCCccHHHHHHHHhcCCC-------------CCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCc
Q 005205 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN 546 (709)
Q Consensus 480 l~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~-------------p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~ 546 (709)
+...+|+.++|+||||||||||+++|++.++ |..|+ +||+|..-++.+.+++.+ .|+.+|+.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 3445899999999999999999999999987 78898 799999999999999876 69999999
Q ss_pred hhHHHHHHcCCCCCCHHHHHHHH
Q 005205 547 DTIFHNIRYGRLSATEEEVYDAA 569 (709)
Q Consensus 547 gTIreNI~~g~~~~s~~ei~~A~ 569 (709)
+++.+| .||.| .+.+.+++
T Consensus 89 ~~~~~n-~YGt~---~~~v~~~l 107 (197)
T 3ney_A 89 GSYQGN-MFGTK---FETVHQIH 107 (197)
T ss_dssp EEETTE-EEEEE---HHHHHHHH
T ss_pred hhhhce-ecccc---hhhHHHHH
Confidence 999999 49864 44454444
No 159
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.95 E-value=5.5e-11 Score=116.38 Aligned_cols=143 Identities=22% Similarity=0.246 Sum_probs=78.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCC-----------CCCEEEECCEeCCC--CCHHHhhcceEEEcCCCCCCchhHHHHH
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSFDT-----------HSGSIRIDGQDICE--VTLESLRKSIGVVPQDTVLFNDTIFHNI 553 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly~p-----------~~G~I~idG~di~~--~~~~~lR~~i~~V~Q~~~LF~gTIreNI 553 (709)
+++|||++|||||||++.+++...| ++|+|.++|.++.- ++....++..++++|...-.++ .|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~----~i 106 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG----AL 106 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE----EE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE----EE
Confidence 7999999999999999999998765 57999999976531 2211222223333331100000 00
Q ss_pred HcCCCCCCHHHHHHHHHHHchHHHHHh-CCCCcc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 005205 554 RYGRLSATEEEVYDAARRAAIHDTIMN-FPAKYS-TVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTE 631 (709)
Q Consensus 554 ~~g~~~~s~~ei~~A~~~a~l~~~I~~-Lp~G~d-T~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE 631 (709)
... +.++..-.+.++. ..+.+.. -+.+.- -.+++. ..|..-..+...+||++.++|+++++| |||+|.++-
T Consensus 107 ~v~--d~~~~~s~~~~~~--~~~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v 179 (191)
T 1oix_A 107 LVY--DIAKHLTYENVER--WLKELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNV 179 (191)
T ss_dssp EEE--ETTCHHHHHTHHH--HHHHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTH
T ss_pred EEE--ECcCHHHHHHHHH--HHHHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCH
Confidence 000 1111110010000 0001111 011100 112221 122222234578999999999999999 999999999
Q ss_pred HHHHHHHHH
Q 005205 632 AEILNALKS 640 (709)
Q Consensus 632 ~~I~~~L~~ 640 (709)
..+++.|.+
T Consensus 180 ~~l~~~l~~ 188 (191)
T 1oix_A 180 EAAFQTILT 188 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 160
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.94 E-value=1.3e-10 Score=117.82 Aligned_cols=167 Identities=16% Similarity=0.161 Sum_probs=91.1
Q ss_pred ccceee-eeEeeCCcEEEEEcCCCccHHHHH-HHHhcCCCCCCCEEEECCEeCCCCCHHHhh---cceEEEcCCCCCCch
Q 005205 473 KILDGV-SFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSFDTHSGSIRIDGQDICEVTLESLR---KSIGVVPQDTVLFND 547 (709)
Q Consensus 473 ~vL~~i-sl~I~~Ge~vaIVG~SGsGKSTL~-~LL~rly~p~~G~I~idG~di~~~~~~~lR---~~i~~V~Q~~~LF~g 547 (709)
+.|+++ .--+++|+.++|+|++|||||||+ +++....++..+.+++++. .+...++ +.+++.+|+...
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e----~~~~~~~~~~~~~g~~~~~~~~--- 82 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE----EHPVQVRQNMAQFGWDVKPYEE--- 82 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS----SCHHHHHHHHHTTTCCCHHHHH---
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc----CCHHHHHHHHHHcCCCHHHHhh---
Confidence 456665 567999999999999999999995 4555555555556666542 2233332 234444433210
Q ss_pred hHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCC
Q 005205 548 TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL--KAPPILLCDEATSA 625 (709)
Q Consensus 548 TIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll--~~p~ILILDEaTSa 625 (709)
.+|+.+.+. ..+ .+..+++ .+..+-+. +....+.+..++.++ .+|+++++|++|+-
T Consensus 83 --~~~l~~~~~--~~~-------------~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 83 --KGMFAMVDA--FTA-------------GIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp --HTSEEEEEC--STT-------------TTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred --CCcEEEEec--chh-------------hcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 012211110 000 0000000 00000011 122334444445444 47999999999988
Q ss_pred C--CHHHHHHHHHHHHHh--cCCCeEEEEecCchH---------HhhcCeEEEEeC
Q 005205 626 L--DSTTEAEILNALKSL--ANNRTSIFIAHRLTT---------AMQCDEIIVLEN 668 (709)
Q Consensus 626 L--D~~tE~~I~~~L~~l--~~~~TvIvIaHRlst---------i~~aD~Iivl~~ 668 (709)
+ |+.........|.+. ..++|+|+++|.... ...||.|+.|+.
T Consensus 141 ~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 141 YINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 7 543334444444443 257899999998764 356899999964
No 161
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.93 E-value=1.6e-10 Score=121.55 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=56.6
Q ss_pred eEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEE---CCEeCCCCCHHHhhcceEEEcCCCCCCc-----hhHHH
Q 005205 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI---DGQDICEVTLESLRKSIGVVPQDTVLFN-----DTIFH 551 (709)
Q Consensus 480 l~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~i---dG~di~~~~~~~lR~~i~~V~Q~~~LF~-----gTIre 551 (709)
+++.+|++++|+|+||+|||||+|.|+|+..|..|+|.+ +|.++.... ..++..+++|+|+|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 677899999999999999999999999999999999999 888776533 222223899999997754 478 9
Q ss_pred HHH--cC-----------C----CCCCHHHHHHHHHHHchHH
Q 005205 552 NIR--YG-----------R----LSATEEEVYDAARRAAIHD 576 (709)
Q Consensus 552 NI~--~g-----------~----~~~s~~ei~~A~~~a~l~~ 576 (709)
||. |. . .......+.+|++..++.+
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 983 21 0 1122346777777776654
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.93 E-value=1.3e-12 Score=134.13 Aligned_cols=139 Identities=18% Similarity=0.204 Sum_probs=99.2
Q ss_pred EEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEE
Q 005205 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V 538 (709)
.+++++.+.|. ...+++++++++++| ++|+||+|||||||++.|++... .|.|.++|.++.+......++.++.+
T Consensus 26 ~~l~~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 100 (254)
T 1ixz_A 26 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 100 (254)
T ss_dssp HHHHHHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHH
Confidence 45677777674 357899999999999 99999999999999999999875 89999999887655555566678888
Q ss_pred cCCCC-CC-chhHHHHH-HcCCCCC-----CHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 005205 539 PQDTV-LF-NDTIFHNI-RYGRLSA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAF 610 (709)
Q Consensus 539 ~Q~~~-LF-~gTIreNI-~~g~~~~-----s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAl 610 (709)
+|+.. .+ .-++.||| .++.... ..++..+.+ ..++. .|||||+||..+++|+
T Consensus 101 ~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll~---------------~l~g~~~~~~~i~~a~ 160 (254)
T 1ixz_A 101 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAA 160 (254)
T ss_dssp HHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHHH---------------HHHTCCTTCCEEEEEE
T ss_pred HHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHHH---------------HHhCCCCCCCEEEEEc
Confidence 88753 23 33566777 4432110 112222211 12221 3679999999999999
Q ss_pred ccCCCEEEEeCCCC
Q 005205 611 LKAPPILLCDEATS 624 (709)
Q Consensus 611 l~~p~ILILDEaTS 624 (709)
..+|++ ||++.-
T Consensus 161 t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 161 TNRPDI--LDPALL 172 (254)
T ss_dssp ESCGGG--SCGGGG
T ss_pred cCCchh--CCHHHc
Confidence 999987 788764
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.92 E-value=3.6e-11 Score=121.13 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=53.5
Q ss_pred eEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC--------HH
Q 005205 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT--------LE 529 (709)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~--------~~ 529 (709)
.|+++|++..|.. ++++++ ++++|+||||||||||+++|++++.|++|.|.++|.++...+ ..
T Consensus 9 ~l~l~~~~~~~~~--------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (227)
T 1qhl_A 9 SLTLINWNGFFAR--------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHG 79 (227)
T ss_dssp EEEEEEETTEEEE--------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGG
T ss_pred EEEEEeeecccCC--------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhh
Confidence 5889998766531 456666 899999999999999999999999999999999999884333 23
Q ss_pred HhhcceEEEcCC
Q 005205 530 SLRKSIGVVPQD 541 (709)
Q Consensus 530 ~lR~~i~~V~Q~ 541 (709)
.++..+++|+|+
T Consensus 80 ~~~~~i~~v~~~ 91 (227)
T 1qhl_A 80 KLKAGVCYSMLD 91 (227)
T ss_dssp GBCSSEEEEEEE
T ss_pred HhhcCcEEEEEe
Confidence 357889999984
No 164
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.92 E-value=6.3e-11 Score=132.57 Aligned_cols=164 Identities=16% Similarity=0.156 Sum_probs=97.1
Q ss_pred eeeeEeeCCcEEEEEcCCCccHHHHHHHHhc--CCCCCCCEEEECCEeCCCCCHHHhhc--ce-EEEcCCCCCCchhHHH
Q 005205 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFR--SFDTHSGSIRIDGQDICEVTLESLRK--SI-GVVPQDTVLFNDTIFH 551 (709)
Q Consensus 477 ~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~r--ly~p~~G~I~idG~di~~~~~~~lR~--~i-~~V~Q~~~LF~gTIre 551 (709)
-+++++.++..+.|+|+|||||||+++.|.. +|.++.|++.+.++|.+...+..+.. |+ +.|-+|+. -+.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~----~a~~ 234 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMK----DAAN 234 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHH----HHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHH----HHHH
Confidence 3778889999999999999999999998876 77888899998888887755544432 11 11112210 0112
Q ss_pred HHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHH----------HHHHHhccCCC-EEEEe
Q 005205 552 NIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRV----------ALARAFLKAPP-ILLCD 620 (709)
Q Consensus 552 NI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRi----------aIARAll~~p~-ILILD 620 (709)
.+..-. ...++-.+.++..++.++ .+|+..+. ..+||||+||. ++|+++-..|. ++++|
T Consensus 235 ~L~~~~--~EmerR~~ll~~~Gv~~i-----~~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvID 304 (512)
T 2ius_A 235 ALRWCV--NEMERRYKLMSALGVRNL-----AGYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVD 304 (512)
T ss_dssp HHHHHH--HHHHHHHHHHHHTTCSSH-----HHHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCEEEEEEE
T ss_pred HHHHHH--HHHHHHHHHHHHcCCccH-----HHHHHHHH---HHhhcCCcccccccccccchhccccccccCCcEEEEEe
Confidence 221100 001111122222221110 01222221 13688888753 46788888898 78899
Q ss_pred CCCCCCCHHHHHHHHHHHHHh---cC--CCeEEEEecCch
Q 005205 621 EATSALDSTTEAEILNALKSL---AN--NRTSIFIAHRLT 655 (709)
Q Consensus 621 EaTSaLD~~tE~~I~~~L~~l---~~--~~TvIvIaHRls 655 (709)
|+++.+|... +.+.+.|.++ .+ |.++|++|||++
T Consensus 305 E~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 305 EFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp THHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred CHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 9999988432 3444444332 22 679999999998
No 165
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.92 E-value=1.9e-09 Score=115.84 Aligned_cols=143 Identities=20% Similarity=0.316 Sum_probs=84.9
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCE-EEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCC
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS-IRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS 559 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~-I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~ 559 (709)
-+++|+.+.|.|++|||||||+.-++.......|. ++++... ..+. ...+.+++.+|+.. +..|
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~-----------i~~~- 121 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLL-----------VSQP- 121 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCE-----------EECC-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeE-----------EecC-
Confidence 58999999999999999999987776544333333 3344321 1111 11112222221111 1111
Q ss_pred CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccC--CCEEEEeCCCCCC----------C
Q 005205 560 ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKA--PPILLCDEATSAL----------D 627 (709)
Q Consensus 560 ~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~--p~ILILDEaTSaL----------D 627 (709)
.++ .|-+.++++++++ |+++|+||+|+-+ |
T Consensus 122 ------------------------------------~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd 163 (349)
T 2zr9_A 122 ------------------------------------DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGD 163 (349)
T ss_dssp ------------------------------------SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC---
T ss_pred ------------------------------------CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccccc
Confidence 011 2345588888765 9999999999998 3
Q ss_pred H---HHHHHHHHHHHHh-----cCCCeEEEEecCch----------------HH-hhcCeEEEEeCCEEEEecC
Q 005205 628 S---TTEAEILNALKSL-----ANNRTSIFIAHRLT----------------TA-MQCDEIIVLENGKVIEQGS 676 (709)
Q Consensus 628 ~---~tE~~I~~~L~~l-----~~~~TvIvIaHRls----------------ti-~~aD~Iivl~~G~Ive~Gt 676 (709)
+ ..++.+.+.++++ ..++|+|+++|-.. .+ ..||.++.+.++++...|+
T Consensus 164 ~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 164 SHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2 1222344444443 24899999999543 13 3589999999887765554
No 166
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.91 E-value=3.9e-11 Score=138.57 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=103.7
Q ss_pred CcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCC-CEEEECCEeCCCCCHHHhhcceEEEcCCC-------
Q 005205 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS-GSIRIDGQDICEVTLESLRKSIGVVPQDT------- 542 (709)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~-G~I~idG~di~~~~~~~lR~~i~~V~Q~~------- 542 (709)
...+++++++.+++|+.+.|+||+|+|||||++.|+++.++.. |.+.+++.+.... ...++++||..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~ 120 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEK 120 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHH
Confidence 4578999999999999999999999999999999999999988 8899988766543 44688888754
Q ss_pred ---------------CCC-chhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 005205 543 ---------------VLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVAL 606 (709)
Q Consensus 543 ---------------~LF-~gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaI 606 (709)
+.| ..++.+|+..++.......+... ......+.+..++ ++. .....+|+|++|++..
T Consensus 121 ~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~~--~~~---~~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 121 YREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDVR--HDP---FQSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEEC--CCC---C----CCCCGGGGEEC
T ss_pred HHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceEE--ech---hhcCCccccccccccC
Confidence 111 11222333222110000000000 0001111121110 011 1223589999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005205 607 ARAFLKAPPILLCDEATSALDSTTEAEILNALKS 640 (709)
Q Consensus 607 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~ 640 (709)
++....++.+|+|||... |++.....+.+.|++
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999988 799988888888874
No 167
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.90 E-value=2.2e-10 Score=113.49 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=68.4
Q ss_pred eEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCC
Q 005205 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS 559 (709)
Q Consensus 480 l~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~ 559 (709)
=++++|++++|+|+|||||||++++|.+.++ .+.+++||+++|++ +|+.++.+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~~~ 69 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDKNG 69 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccccC
Confidence 4688999999999999999999999999875 48999999999987 677766544
Q ss_pred CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 005205 560 ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEA 622 (709)
Q Consensus 560 ~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEa 622 (709)
..+.++.++++...+.+++..+.++.-. -.++.|.++ ..+++++|+|=+
T Consensus 70 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~------~~~~~~~~~--------~~~~~~vi~eg~ 118 (207)
T 2qt1_A 70 FLQYDVLEALNMEKMMSAISCWMESARH------SVVSTDQES--------AEEIPILIIEGF 118 (207)
T ss_dssp CBCCSSGGGBCHHHHHHHHHHHHHHHTT------SSCCC-------------CCCCEEEEECT
T ss_pred CChhHHHHHhHHHHHHHHHHHHHhCCCC------CCcCCCeee--------cCCCCEEEEeeh
Confidence 4333344455555555555443222110 134455544 456788888644
No 168
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.88 E-value=1.1e-10 Score=113.36 Aligned_cols=81 Identities=16% Similarity=0.249 Sum_probs=63.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCC-CCCEEE----------ECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHH
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIR----------IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-~~G~I~----------idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIre 551 (709)
.+|+.++|+||||||||||+++|++++++ ..|.|. +||++...++.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 37999999999999999999999999873 445543 47777777888888774 67999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHH
Q 005205 552 NIRYGRLSATEEEVYDAAR 570 (709)
Q Consensus 552 NI~~g~~~~s~~ei~~A~~ 570 (709)
| .||.+ .+++.++++
T Consensus 80 n-~yg~~---~~~i~~~l~ 94 (180)
T 1kgd_A 80 A-MYGTK---LETIRKIHE 94 (180)
T ss_dssp E-EEEEE---HHHHHHHHH
T ss_pred c-ccccc---HHHHHHHHH
Confidence 9 57754 455555443
No 169
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.86 E-value=4.6e-12 Score=137.65 Aligned_cols=169 Identities=13% Similarity=0.150 Sum_probs=107.6
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhc------------CCCCCCCEEEECCEeCCCCCH-HHhhcc---eEEEcCCCCC
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFR------------SFDTHSGSIRIDGQDICEVTL-ESLRKS---IGVVPQDTVL 544 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~r------------ly~p~~G~I~idG~di~~~~~-~~lR~~---i~~V~Q~~~L 544 (709)
++++|.+++|||++|+|||||++.|.| ..+|+.|.|.++|..+..+.. ..-++. ...+.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 568899999999999999999999999 678999999998843221100 000111 2355666665
Q ss_pred Cch-hHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeC
Q 005205 545 FND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAP--PILLCDE 621 (709)
Q Consensus 545 F~g-TIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p--~ILILDE 621 (709)
..+ |..|++ ..+....++.+.. |..+=+..+ ...-..+||+. || +|+++||
T Consensus 96 ~~~~s~~e~L--------~~~fl~~ir~~d~---il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGL--------GNAFLSHVRAVDA---IYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSS--------CHHHHHHHTTCSE---EEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHH--------HHHHHHHHHHHHH---HHHHHhccc---cceeeeecccc------------Ccchhhhhchh
Confidence 432 111111 0122222222210 000000011 12223356552 89 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHHh-cC-CCeEEEEecCchHHhh-cCeEE-EEeCC-EEEEecCh
Q 005205 622 ATSALDSTTEAEILNALKSL-AN-NRTSIFIAHRLTTAMQ-CDEII-VLENG-KVIEQGSH 677 (709)
Q Consensus 622 aTSaLD~~tE~~I~~~L~~l-~~-~~TvIvIaHRlsti~~-aD~Ii-vl~~G-~Ive~Gth 677 (709)
+++.+|.++-+...+.+++. .+ ++|+ ++|.+..+.. ||+|. +|++| +++..|+.
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 99999999998888888887 54 4553 4999887655 89999 99999 88866653
No 170
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.82 E-value=5.9e-09 Score=116.17 Aligned_cols=178 Identities=16% Similarity=0.144 Sum_probs=112.5
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCC-EEEECCEeCCCCCHHHhhcce-EEEcCCCCCCchhHH
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-SIRIDGQDICEVTLESLRKSI-GVVPQDTVLFNDTIF 550 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G-~I~idG~di~~~~~~~lR~~i-~~V~Q~~~LF~gTIr 550 (709)
+.|+++..-+++|+.+.|.|++|+|||||+.-+++...+..| .|.+-+. +.+...+++.+ +....-+ .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~-------~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNIN-------A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCC-------H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCC-------H
Confidence 468888878999999999999999999999999887766555 5555432 34555555432 1111100 1
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCH
Q 005205 551 HNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL--KAPPILLCDEATSALDS 628 (709)
Q Consensus 551 eNI~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll--~~p~ILILDEaTSaLD~ 628 (709)
+++.-| ..++++..+..+.+ +.+...| -.+-+ -..+|++|.+ +.||++. .+|+++|+|+++.-.++
T Consensus 261 ~~l~~g--~l~~~~~~~~~~a~---~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTG--KLTPEDWGKLTMAM---GSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTS--CCCHHHHHHHHHHH---HHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcC--CCCHHHHHHHHHHH---HHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 223334 24566544333322 2233322 11222 2478999875 6778877 57999999999987743
Q ss_pred H--------HHHHHHHHHHHhc--CCCeEEEEec-----------Cch---------HHhhcCeEEEEeCCEEE
Q 005205 629 T--------TEAEILNALKSLA--NNRTSIFIAH-----------RLT---------TAMQCDEIIVLENGKVI 672 (709)
Q Consensus 629 ~--------tE~~I~~~L~~l~--~~~TvIvIaH-----------Rls---------ti~~aD~Iivl~~G~Iv 672 (709)
. .-..+.+.|+++. .++|+|+++| |+. .-..||.|++|..++.-
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~ 402 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYY 402 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccccc
Confidence 1 1245556666553 3789999999 132 23469999999877653
No 171
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.81 E-value=6.4e-10 Score=129.49 Aligned_cols=132 Identities=18% Similarity=0.137 Sum_probs=95.5
Q ss_pred eeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC--CCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHH--
Q 005205 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIR-- 554 (709)
Q Consensus 479 sl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p--~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~-- 554 (709)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.++...+.++.+++++|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987765 78999 8999999999999999999999999999888777774
Q ss_pred cCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 005205 555 YGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEI 634 (709)
Q Consensus 555 ~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I 634 (709)
.|..+. ..++..+++ ..|+.++++| ||+.+|+.+++.+
T Consensus 82 pG~~~f-~~~~~~~l~----------------------------------------~ad~~ilVvD-~~~g~~~qt~~~~ 119 (665)
T 2dy1_A 82 PGYGDF-VGEIRGALE----------------------------------------AADAALVAVS-AEAGVQVGTERAW 119 (665)
T ss_dssp CCSGGG-HHHHHHHHH----------------------------------------HCSEEEEEEE-TTTCSCHHHHHHH
T ss_pred CCccch-HHHHHHHHh----------------------------------------hcCcEEEEEc-CCcccchhHHHHH
Confidence 222111 122222222 2355677777 7888887777544
Q ss_pred HHHHHHhcCCCeEEEEecCchH
Q 005205 635 LNALKSLANNRTSIFIAHRLTT 656 (709)
Q Consensus 635 ~~~L~~l~~~~TvIvIaHRlst 656 (709)
.... + .+.++|++.|.+..
T Consensus 120 ~~~~-~--~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 120 TVAE-R--LGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHH-H--TTCCEEEEEECGGG
T ss_pred HHHH-H--ccCCEEEEecCCch
Confidence 4332 2 35677777777654
No 172
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.77 E-value=5.2e-11 Score=128.90 Aligned_cols=138 Identities=14% Similarity=0.167 Sum_probs=90.7
Q ss_pred cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHH
Q 005205 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIre 551 (709)
.++|+++|+++++|+.++|+||+|||||||+++|++. .+|.+..-+ . +.+.++..+++++|...+| .|
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~d 223 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--L---PLDRLNFELGVAIDQFLVV----FE 223 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ET
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--c---cchhHHHHHHHhcchhHHH----HH
Confidence 3689999999999999999999999999999999985 468776511 1 1122334588899987653 34
Q ss_pred HHHcCCC---CC-CHHHHHHHHHHHchHHHHHh---------CCCCcc-----ccccCCCCCCChHHHHHHHHHHHhccC
Q 005205 552 NIRYGRL---SA-TEEEVYDAARRAAIHDTIMN---------FPAKYS-----TVVGERGLKLSGGEKQRVALARAFLKA 613 (709)
Q Consensus 552 NI~~g~~---~~-s~~ei~~A~~~a~l~~~I~~---------Lp~G~d-----T~vGe~G~~LSGGQrQRiaIARAll~~ 613 (709)
++....+ .. +.+.+. ....+.+.+.. .|+-.+ -.+.++-..+++|.+||++.+.+++.+
T Consensus 224 d~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~ 300 (377)
T 1svm_A 224 DVKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPK 300 (377)
T ss_dssp TCCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCC
T ss_pred HHHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCC
Confidence 4443322 01 001110 11233333321 111111 023345567899999999999999999
Q ss_pred CCEEE-EeCCCC
Q 005205 614 PPILL-CDEATS 624 (709)
Q Consensus 614 p~ILI-LDEaTS 624 (709)
|++++ ||+|+.
T Consensus 301 pDLliyLd~~~~ 312 (377)
T 1svm_A 301 DYLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHHTCTH
T ss_pred CCeEEEEeCCHH
Confidence 99999 999987
No 173
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.71 E-value=4.4e-10 Score=111.77 Aligned_cols=72 Identities=28% Similarity=0.363 Sum_probs=56.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCC-CCCEEE----------ECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHH
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIR----------IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-~~G~I~----------idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIre 551 (709)
++|+.++|+||||||||||++.|++.++| ..+.+. .+|++....+.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999986 333332 456666667777777765 6788888888888
Q ss_pred HHHcCCC
Q 005205 552 NIRYGRL 558 (709)
Q Consensus 552 NI~~g~~ 558 (709)
| .||.+
T Consensus 83 ~-~yg~~ 88 (208)
T 3tau_A 83 N-YYGTP 88 (208)
T ss_dssp E-EEEEE
T ss_pred c-cCCCc
Confidence 7 57754
No 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.69 E-value=4.1e-09 Score=103.41 Aligned_cols=137 Identities=26% Similarity=0.333 Sum_probs=75.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC-----CCC------CCEEEECCEeCC----CCC-HHHhhcceEEEcCCCC--C--Cc
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF-----DTH------SGSIRIDGQDIC----EVT-LESLRKSIGVVPQDTV--L--FN 546 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly-----~p~------~G~I~idG~di~----~~~-~~~lR~~i~~V~Q~~~--L--F~ 546 (709)
+++|+|++|||||||++.|+|.. .|+ .|.|.++|.++. +.+ .+.+++......|+.. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 68999999999999999999974 243 578999997652 222 2223333333333321 1 22
Q ss_pred hhHHHHHHcCCCCCCHHHHHHHHHHHchHHHHHh-CCCCcc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 005205 547 DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMN-FPAKYS-TVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATS 624 (709)
Q Consensus 547 gTIreNI~~g~~~~s~~ei~~A~~~a~l~~~I~~-Lp~G~d-T~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTS 624 (709)
.+-.. +.+++....+ .+.. .+.+.- -.++.. ..|..-.......||++.++|+++++| ||
T Consensus 87 ~~~~~---------s~~~~~~~~~------~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~S 148 (199)
T 2f9l_A 87 IAKHL---------TYENVERWLK------ELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNNLSFIE--TS 148 (199)
T ss_dssp TTCHH---------HHHTHHHHHH------HHHHHSCTTCEEEEEEEC-TTCGGGCCSCHHHHHHHHHHTTCEEEE--CC
T ss_pred CcCHH---------HHHHHHHHHH------HHHHhcCCCCeEEEEEEC-cccccccCcCHHHHHHHHHHcCCeEEE--Ee
Confidence 11100 0111111111 1111 111111 112221 122111112356799999999999999 99
Q ss_pred CCCHHHHHHHHHHHHHh
Q 005205 625 ALDSTTEAEILNALKSL 641 (709)
Q Consensus 625 aLD~~tE~~I~~~L~~l 641 (709)
|+|.+.-..+++.|.+.
T Consensus 149 al~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILTE 165 (199)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999988888877543
No 175
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.66 E-value=2.4e-09 Score=109.53 Aligned_cols=52 Identities=31% Similarity=0.489 Sum_probs=36.2
Q ss_pred eEEEEeE-EEEecCCcccceeeeeEeeC---CcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 458 SIQFDNV-HFSYLTERKILDGVSFVVPA---GKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 458 ~I~f~nV-sF~Y~~~~~vL~~isl~I~~---Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.|+++|| +|+|.++.++|+|+||+|++ |++++|+|++||||||++++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 99995567899999999999 9999999999999999999998854
No 176
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.60 E-value=2.9e-09 Score=104.88 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=41.1
Q ss_pred eEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCC
Q 005205 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV 543 (709)
Q Consensus 480 l~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~ 543 (709)
++|++|+.++|+|+|||||||++++|.+++.|+.| +.+ +...++... ..+..+++++|++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~~-~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMRE-GEVDGVDYFFKTRD 61 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCCT-TCCBTTTBEECCHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCCC-CccCCCceEEcCHH
Confidence 46899999999999999999999999999977655 222 223332221 12234778887653
No 177
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.58 E-value=2.8e-09 Score=120.84 Aligned_cols=72 Identities=26% Similarity=0.303 Sum_probs=56.2
Q ss_pred eEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCC-EEE-ECCEeCCC-------CCH---HHhhcceEEEcCCCCCCch
Q 005205 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-SIR-IDGQDICE-------VTL---ESLRKSIGVVPQDTVLFND 547 (709)
Q Consensus 480 l~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G-~I~-idG~di~~-------~~~---~~lR~~i~~V~Q~~~LF~g 547 (709)
..+++|+.++|+|+||||||||+++|++.+.|++| +|. +||.++.+ ++. ..+++.+++|+|+ -
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~-----l 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE-----I 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH-----H
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH-----H
Confidence 46889999999999999999999999999999997 784 99977643 232 2345668999887 2
Q ss_pred hHHHHHHcC
Q 005205 548 TIFHNIRYG 556 (709)
Q Consensus 548 TIreNI~~g 556 (709)
+..+|+.+.
T Consensus 439 ~~~~~ivi~ 447 (552)
T 3cr8_A 439 TKNRGIAIC 447 (552)
T ss_dssp HHTTCEEEE
T ss_pred HhcCCEEEE
Confidence 556676554
No 178
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.55 E-value=7.9e-08 Score=107.05 Aligned_cols=114 Identities=20% Similarity=0.295 Sum_probs=75.2
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHH
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHN 552 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreN 552 (709)
..++++++.+++| +.|+||+|+|||||++.+++.... .+-.+ +.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~f~~i---------s~--- 82 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------PFFHI---------SG--- 82 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------CEEEE---------EG---
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------CeeeC---------CH---
Confidence 4567788888888 899999999999999999983210 01011 00
Q ss_pred HHcCCCCCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC--------
Q 005205 553 IRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATS-------- 624 (709)
Q Consensus 553 I~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTS-------- 624 (709)
.+++.. + +| .|++++|-.+++|...+|.||++||+.+
T Consensus 83 ----------------------~~~~~~----~---~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 83 ----------------------SDFVEL----F---VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp ----------------------GGTTTC----C---TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----
T ss_pred ----------------------HHHHHH----H---hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc
Confidence 000000 0 11 2788999999999999999999999943
Q ss_pred --CCCHHHHHHHHHHHHHh-----cCCCeEEEEecCchHH
Q 005205 625 --ALDSTTEAEILNALKSL-----ANNRTSIFIAHRLTTA 657 (709)
Q Consensus 625 --aLD~~tE~~I~~~L~~l-----~~~~TvIvIaHRlsti 657 (709)
+.|.+.++.+.+-+..+ ..+..+|..||+...+
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 56666665555544433 2356788889998654
No 179
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.55 E-value=5.4e-08 Score=105.01 Aligned_cols=143 Identities=20% Similarity=0.252 Sum_probs=86.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC-----------CCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCC----CchhHHH
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSFD-----------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL----FNDTIFH 551 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly~-----------p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~L----F~gTIre 551 (709)
+++|||++|||||||++.|.+... |+.|.|.++|.++. +....|++.|.|.- |..|..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~- 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLS- 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHH-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHH-
Confidence 499999999999999999999875 67899999997653 33456766664432 333332
Q ss_pred HHHcCC-----CCCCHHH--HHHHHHHHchHHHHHhC--CCCccccccCCCCCCChHHHHHHHHH----HHh-ccCCCEE
Q 005205 552 NIRYGR-----LSATEEE--VYDAARRAAIHDTIMNF--PAKYSTVVGERGLKLSGGEKQRVALA----RAF-LKAPPIL 617 (709)
Q Consensus 552 NI~~g~-----~~~s~~e--i~~A~~~a~l~~~I~~L--p~G~dT~vGe~G~~LSGGQrQRiaIA----RAl-l~~p~IL 617 (709)
.+.-.+ -++++.. ..+..+. ..+.+..+ ++----.|+.+--.+|+|++||++++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 232111 0122211 2111111 12222222 11111223444445788899988887 776 545555
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc
Q 005205 618 LCDEATSALDSTTEAEILNALKSLA 642 (709)
Q Consensus 618 ILDEaTSaLD~~tE~~I~~~L~~l~ 642 (709)
+||||+|.+.-..+.+.|.+..
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHh
Confidence 8999999999999988887643
No 180
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.52 E-value=2.6e-09 Score=105.39 Aligned_cols=60 Identities=25% Similarity=0.391 Sum_probs=46.7
Q ss_pred eEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEE--EECCEeCC
Q 005205 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI--RIDGQDIC 524 (709)
Q Consensus 463 nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I--~idG~di~ 524 (709)
|++..+ ......+..++..++|+.++|+|+|||||||++++|++.+. ..|.+ ++||.+++
T Consensus 4 ~~~~~~-~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 4 NIKWHE-CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCcccc-cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 444433 23456778888999999999999999999999999999987 78988 99986654
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.49 E-value=1.5e-07 Score=101.57 Aligned_cols=161 Identities=14% Similarity=0.133 Sum_probs=84.8
Q ss_pred cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhc--CCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhH
Q 005205 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR--SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTI 549 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~r--ly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTI 549 (709)
..+|+++++++| .|+|||++|||||||++.|.| +.++.+|.+.-....+.-.+...-....+..++.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~------ 94 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPR------ 94 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTT------
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCC------
Confidence 358999999998 999999999999999999999 778888877644433221111011122333332221
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHchHHHHHh---------------CCCC-----cccccc--C--CCCCCChHHHHHHH
Q 005205 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMN---------------FPAK-----YSTVVG--E--RGLKLSGGEKQRVA 605 (709)
Q Consensus 550 reNI~~g~~~~s~~ei~~A~~~a~l~~~I~~---------------Lp~G-----~dT~vG--e--~G~~LSGGQrQRia 605 (709)
..-.+.+++.+.+..... -+.. -|++ .||+ | + .+...++.++|+.+
T Consensus 95 -------~~~~~~~~v~~~i~~~~~--~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtP-G~~~~~~~~q~~~~~~~~~~ 164 (360)
T 3t34_A 95 -------KKFTDFAAVRKEIQDETD--RETGRSKAISSVPIHLSIYSPNVVNLTLIDLP-GLTKVAVDGQSDSIVKDIEN 164 (360)
T ss_dssp -------CCBSCHHHHHHHHHHHHH--HTSCTTCCCCCSCEEEEEEETTSCSEEEEECC-CBCSSCCTTCCSSHHHHHHH
T ss_pred -------cccCCHHHHHHHHHHHHH--HhcCCCCCcccceEEEEEeCCCCCCeEEEECC-CCCcCCcCCCchhHHHHHHH
Confidence 001112222222221100 0000 0111 1222 1 1 11246788999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CC-CeEEEEec
Q 005205 606 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NN-RTSIFIAH 652 (709)
Q Consensus 606 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~-~TvIvIaH 652 (709)
++++.+++|+++||.-..+..|..++ ...+.++.+. .+ +|++++++
T Consensus 165 ~~~~~i~~~d~iilvv~~~~~~~~~~-~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 165 MVRSYIEKPNCIILAISPANQDLATS-DAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHHHSSSEEEEEEEETTSCGGGC-HHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHHHhhcCCeEEEEeecccCCcCCH-HHHHHHHHhcccCCCEEEEEeC
Confidence 99999999997777643334454432 3344444443 23 56666654
No 182
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.48 E-value=1.5e-08 Score=99.89 Aligned_cols=60 Identities=22% Similarity=0.233 Sum_probs=43.7
Q ss_pred eeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHh-hcceEEEcCCCCC
Q 005205 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGVVPQDTVL 544 (709)
Q Consensus 479 sl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~l-R~~i~~V~Q~~~L 544 (709)
.++.++|+.++|+|++||||||++++|++.+ |.+.+||.++.. .... +..+++++|++.+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~ 83 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDEDR 83 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCccc
Confidence 3667899999999999999999999999987 999999987753 2222 2346788887543
No 183
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.47 E-value=5.9e-09 Score=100.82 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=47.9
Q ss_pred eeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCE--eCCCCC----HHHhhcceEEEcCCC
Q 005205 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ--DICEVT----LESLRKSIGVVPQDT 542 (709)
Q Consensus 476 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~--di~~~~----~~~lR~~i~~V~Q~~ 542 (709)
+++++++.+| .++|+||||||||||++.|.++..+..|...-.+. ++-... ....+..|.+++|++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 5789999999 99999999999999999999988887775433221 111111 012456799999986
No 184
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.46 E-value=4.5e-08 Score=103.72 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=58.5
Q ss_pred cceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH----HHh-----hcceEEE-cCCCC
Q 005205 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL----ESL-----RKSIGVV-PQDTV 543 (709)
Q Consensus 474 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~----~~l-----R~~i~~V-~Q~~~ 543 (709)
+++++||++++|++++|+|++|+||||++..|++.+.+..|+|++.+.|+..... ..| +..+.++ +|...
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 3467888899999999999999999999999999999999999999888765432 344 6779999 66644
Q ss_pred CC
Q 005205 544 LF 545 (709)
Q Consensus 544 LF 545 (709)
..
T Consensus 174 ~~ 175 (320)
T 1zu4_A 174 AD 175 (320)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 185
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.44 E-value=2.9e-08 Score=106.07 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=50.8
Q ss_pred CceEEEEeEEEEecCCcccce--------------eeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 456 GGSIQFDNVHFSYLTERKILD--------------GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 456 ~g~I~f~nVsF~Y~~~~~vL~--------------~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.+.|+|+||+|.||.++.+|+ |+++.|.+||+++|||+||+|||||+++|.++.
T Consensus 131 ~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 367999999999998888999 899999999999999999999999999999975
No 186
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.39 E-value=2.3e-09 Score=105.29 Aligned_cols=83 Identities=25% Similarity=0.340 Sum_probs=48.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC-CCC-H--HHhhcceEEEcCCCCCCchhHHHHHHcCCCCC
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC-EVT-L--ESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSA 560 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~-~~~-~--~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~ 560 (709)
...++|+|++||||||+.++|.+. |...+|.-++. +.. . ..+.+.+ |+.+. +|++ ||..++....
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~~~~~~~~~~~~i~~~~----~~~~~-~g~i-~~~~l~~~~~ 76 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDALAARARENKEEELKRLF----PEAVV-GGRL-DRRALARLVF 76 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHHHHHHHHHTHHHHHHHC----GGGEE-TTEE-CHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHHHHHhcCChHHHHHHHH----HHHHh-CCCc-CHHHHHHHHh
Confidence 357999999999999999999985 77777653321 110 0 2333322 44444 5666 5544443223
Q ss_pred CHHHHHHHHHHHchHHHHH
Q 005205 561 TEEEVYDAARRAAIHDTIM 579 (709)
Q Consensus 561 s~~ei~~A~~~a~l~~~I~ 579 (709)
++++.++.++ ...|++|.
T Consensus 77 ~~~~~~~~l~-~~~~~~i~ 94 (203)
T 1uf9_A 77 SDPERLKALE-AVVHPEVR 94 (203)
T ss_dssp TSHHHHHHHH-HHHHHHHH
T ss_pred CCHHHHHHHH-HHhChHHH
Confidence 4455555555 33455443
No 187
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.39 E-value=5.6e-09 Score=116.99 Aligned_cols=139 Identities=18% Similarity=0.211 Sum_probs=97.4
Q ss_pred EEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEc
Q 005205 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (709)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~ 539 (709)
+++++...|. +..+++++++++++| +.|+||+|+|||||++.|++... .|.|.++|.++.+......++.+..++
T Consensus 42 ~l~~lv~~l~-~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lf 116 (499)
T 2dhr_A 42 ELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 116 (499)
T ss_dssp HHHHHHHHHH-CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHT
T ss_pred HHHHHHHHhh-chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHH
Confidence 4455544453 346789999999999 99999999999999999999875 789999998887665555666777888
Q ss_pred CCCC-CCc-hhHHHHH-HcCCCC-----CCHHHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 005205 540 QDTV-LFN-DTIFHNI-RYGRLS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFL 611 (709)
Q Consensus 540 Q~~~-LF~-gTIreNI-~~g~~~-----~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll 611 (709)
|+.. .+. -.+-|+| .++... ...++..+.+ ..++. .|||||+|+..|++|..
T Consensus 117 q~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 117 ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAAT 176 (499)
T ss_dssp TTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEECC
T ss_pred HHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEEec
Confidence 8764 232 2456677 344211 1123332222 12222 26788889999999999
Q ss_pred cCCCEEEEeCCCCC
Q 005205 612 KAPPILLCDEATSA 625 (709)
Q Consensus 612 ~~p~ILILDEaTSa 625 (709)
.+|++ ||||.-.
T Consensus 177 n~p~~--LD~aLlr 188 (499)
T 2dhr_A 177 NRPDI--LDPALLR 188 (499)
T ss_dssp SCGGG--SCTTTSS
T ss_pred CChhh--cCccccc
Confidence 99987 8988753
No 188
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.37 E-value=1.1e-07 Score=93.73 Aligned_cols=69 Identities=20% Similarity=0.298 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchH---HhhcCeEEEEe
Q 005205 596 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTT---AMQCDEIIVLE 667 (709)
Q Consensus 596 LSGGQrQRiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlst---i~~aD~Iivl~ 667 (709)
.+.|+.+|..+++.++.+|..+-.+ ++.+++...+.+.+.+... .+.++|+-+|-+.. .+.||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3688999999999999888654333 3345666666666555543 35678877887755 36799999986
No 189
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.36 E-value=1.4e-07 Score=100.31 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=25.2
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhcC
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~rl 508 (709)
-+++|+.+.|.|++|||||||+.-++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999877653
No 190
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.35 E-value=3.1e-08 Score=104.76 Aligned_cols=123 Identities=16% Similarity=0.204 Sum_probs=76.3
Q ss_pred cccceeeeeEeeCCc------EEEEEcCCCccHHHHHHHHhcCCCC--CCCEEEECCEeCCCCCHHHhhcceEEEcCCCC
Q 005205 472 RKILDGVSFVVPAGK------SVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQDICEVTLESLRKSIGVVPQDTV 543 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge------~vaIVG~SGsGKSTL~~LL~rly~p--~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~ 543 (709)
.+.|++++..+.+++ ++||+|||||||||++++|.+++++ ++| .+++++||.+
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~-------------------~v~~i~~D~f 133 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHP-------------------NVEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCC-------------------CEEEEEGGGG
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCC-------------------eEEEEeeccc
Confidence 456777777777776 8999999999999999999999874 444 3666777777
Q ss_pred CCchhHHHHH----HcCCCCCCHHHHHHHHHHHchHHHHHhCCCCc---cccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 005205 544 LFNDTIFHNI----RYGRLSATEEEVYDAARRAAIHDTIMNFPAKY---STVVGERGLKLSGGEKQRVALARAFLKAPPI 616 (709)
Q Consensus 544 LF~gTIreNI----~~g~~~~s~~ei~~A~~~a~l~~~I~~Lp~G~---dT~vGe~G~~LSGGQrQRiaIARAll~~p~I 616 (709)
.++....+.. .+|.|+.-|-+ .+.+++..+..|- ..++ +|-+..+|+.-+...+..|+|
T Consensus 134 ~~~~~~l~~~~~~~~~g~P~~~D~~--------~l~~~L~~L~~g~~~v~~P~------yd~~~~~r~~~~~~~v~~~dI 199 (321)
T 3tqc_A 134 LYSNAKLEKQGLMKRKGFPESYDMP--------SLLRVLNAIKSGQRNVRIPV------YSHHYYDIVRGQYEIVDQPDI 199 (321)
T ss_dssp BCCHHHHHHTTCGGGTTSGGGBCHH--------HHHHHHHHHHTTCSSEEEEE------EETTTTEEEEEEEEEECSCSE
T ss_pred ccchhhhhhHHHHhhccCcccccHH--------HHHHHHHhhhccccccccch------hhhhccccccCceeeccCCCE
Confidence 6665544432 24444332222 1233444444443 1122 122222333333455678999
Q ss_pred EEEeCCCCCCC
Q 005205 617 LLCDEATSALD 627 (709)
Q Consensus 617 LILDEaTSaLD 627 (709)
+|+|.+-.-.|
T Consensus 200 VIvEGi~lL~~ 210 (321)
T 3tqc_A 200 VILEGLNILQT 210 (321)
T ss_dssp EEEECTTTTCC
T ss_pred EEEEccccccc
Confidence 99999876544
No 191
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.32 E-value=4.7e-07 Score=96.97 Aligned_cols=59 Identities=25% Similarity=0.298 Sum_probs=44.9
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEE-EECCEeCCCCCHHHhhcceEEEcCCC
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-RIDGQDICEVTLESLRKSIGVVPQDT 542 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I-~idG~di~~~~~~~lR~~i~~V~Q~~ 542 (709)
-+++|+.+.|.||+|||||||+..+++...+..|.+ ++|+.+.. ...+.+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~---~~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL---DPVYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---CHHHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc---chHHHHHcCCchhhh
Confidence 489999999999999999999999999888877865 66654322 223555677776654
No 192
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.31 E-value=1.2e-06 Score=96.05 Aligned_cols=162 Identities=13% Similarity=0.046 Sum_probs=98.7
Q ss_pred EEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH-hhcceEEE
Q 005205 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIGVV 538 (709)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~-lR~~i~~V 538 (709)
-.++++..|++.. ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|+......+ ++..
T Consensus 78 v~~~L~~~~~~~~---~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~---- 148 (425)
T 2ffh_A 78 VYEALKEALGGEA---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL---- 148 (425)
T ss_dssp HHHHHHHHTTSSC---CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH----
T ss_pred HHHHHHHHhCCCc---ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh----
Confidence 3445555564322 567787 89999999999999999999999999999999999888776533221 2110
Q ss_pred cCCCCCCchhHHHHHHcC--CCCCCHHHHHHHHHHHchHHHHHhC-CCCccccccCCCCCCC---hHHHHHHHHHHHhcc
Q 005205 539 PQDTVLFNDTIFHNIRYG--RLSATEEEVYDAARRAAIHDTIMNF-PAKYSTVVGERGLKLS---GGEKQRVALARAFLK 612 (709)
Q Consensus 539 ~Q~~~LF~gTIreNI~~g--~~~~s~~ei~~A~~~a~l~~~I~~L-p~G~dT~vGe~G~~LS---GGQrQRiaIARAll~ 612 (709)
.=+.|+.+. .+..+..++. .+.+..+ .++||..+-+..-.++ .-..+..++++++..
T Consensus 149 ---------~~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~p 211 (425)
T 2ffh_A 149 ---------GEKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGP 211 (425)
T ss_dssp ---------HHHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCC
T ss_pred ---------cccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCC
Confidence 001222111 1122334441 1233333 3678877765443443 245677788888877
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEec
Q 005205 613 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAH 652 (709)
Q Consensus 613 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaH 652 (709)
++-+|++| ++++.|..... +.+.+. -+.|-+++++
T Consensus 212 d~vlLVvD-a~tgq~av~~a---~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 212 DEVLLVLD-AMTGQEALSVA---RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp SEEEEEEE-GGGTTHHHHHH---HHHHHH-TCCCEEEEES
T ss_pred ceEEEEEe-ccchHHHHHHH---HHHHhc-CCceEEEEeC
Confidence 77788888 55565554322 233321 2457777775
No 193
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=2.4e-07 Score=91.06 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=24.9
Q ss_pred Eec--CCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 467 SYL--TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 467 ~Y~--~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+|+ +..+.++|+||++++|+.++|+|++||||||+++.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 455 3458999999999999999999999999999999999866
No 194
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.29 E-value=8.6e-07 Score=95.44 Aligned_cols=123 Identities=16% Similarity=0.200 Sum_probs=80.8
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHH
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEV 565 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei 565 (709)
-++++||++|+|||||++.|.+.. +. +++.+... ..-.++.++++.. .+
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~-~~-----~~~~~~~t-----~~~~~~~~~~~~~--------~~------------ 216 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK-PE-----IASYPFTT-----RGINVGQFEDGYF--------RY------------ 216 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC-CE-----EECCTTCS-----SCEEEEEEEETTE--------EE------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-Cc-----cCCCCCee-----eceeEEEEEecCc--------eE------------
Confidence 479999999999999999999864 21 22211111 1112333333211 00
Q ss_pred HHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhcCC
Q 005205 566 YDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCD-EATSALDSTTEAEILNALKSLANN 644 (709)
Q Consensus 566 ~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILD-EaTSaLD~~tE~~I~~~L~~l~~~ 644 (709)
. +-..|+-.+ .....+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+...+
T Consensus 217 -------~----l~Dt~G~~~----~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~ 280 (357)
T 2e87_A 217 -------Q----IIDTPGLLD----RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKD 280 (357)
T ss_dssp -------E----EEECTTTSS----SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTT
T ss_pred -------E----EEeCCCccc----cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCC
Confidence 0 111222222 123457999999887 66666788889999 999999999988888888776658
Q ss_pred CeEEEEe--cCch
Q 005205 645 RTSIFIA--HRLT 655 (709)
Q Consensus 645 ~TvIvIa--HRls 655 (709)
+.+|+|. |++.
T Consensus 281 ~piilV~NK~Dl~ 293 (357)
T 2e87_A 281 LPFLVVINKIDVA 293 (357)
T ss_dssp SCEEEEECCTTTC
T ss_pred CCEEEEEECcccC
Confidence 8899998 7764
No 195
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.25 E-value=2.5e-08 Score=100.56 Aligned_cols=65 Identities=22% Similarity=0.101 Sum_probs=50.3
Q ss_pred eeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC------CHHH----hhcceEEEcCCCCCCc
Q 005205 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV------TLES----LRKSIGVVPQDTVLFN 546 (709)
Q Consensus 478 isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~------~~~~----lR~~i~~V~Q~~~LF~ 546 (709)
-+.+.++|+.++|+|++||||||++++|.++ .|+|.+++.|...+ .... .++.+++++|++.++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3446689999999999999999999999998 79999999876432 1211 2456888888876654
No 196
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.23 E-value=1.1e-06 Score=103.83 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=51.2
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhcCC-CeEEE-EecCchHHh
Q 005205 595 KLSGGEKQRVALARAFLKAPPILLCDEATS-ALDSTTEAEILNALKSLANN-RTSIF-IAHRLTTAM 658 (709)
Q Consensus 595 ~LSGGQrQRiaIARAll~~p~ILILDEaTS-aLD~~tE~~I~~~L~~l~~~-~TvIv-IaHRlsti~ 658 (709)
-+|+|+.+|..++++++.+++++|+|||+. .||.+.-..+.+.+.+...+ +++++ .||....+.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 468999999999999999999999999997 89988777777776665544 45555 378766554
No 197
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.16 E-value=3.4e-07 Score=104.12 Aligned_cols=58 Identities=19% Similarity=0.355 Sum_probs=47.5
Q ss_pred EEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 005205 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (709)
Q Consensus 461 f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG 520 (709)
+++|...|. +..+++++++++ +|+.+.|+||+|+|||||++.|.+...+..|.|.++|
T Consensus 86 ~~~vk~~i~-~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 86 LEKVKERIL-EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CHHHHHHHH-HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHHHHH-HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 344544442 235778888888 8999999999999999999999999998888887766
No 198
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.16 E-value=6e-07 Score=92.34 Aligned_cols=59 Identities=19% Similarity=0.154 Sum_probs=50.1
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEEe
Q 005205 603 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLE 667 (709)
Q Consensus 603 RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl~ 667 (709)
|++|||||..+|++++||||| |+++...+.+ ....+.|+++++|..+....||++++|.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALR---AAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---HHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 899999999999999999999 9888655444 3446899999999999888889887664
No 199
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.09 E-value=3.1e-06 Score=90.05 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=65.2
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHH
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHN 552 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreN 552 (709)
+-|+.+.--++||+.+.|.|++|+|||||+.-++.-.....+. +.|++=
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~-------------------Vl~fSl------------ 82 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG-------------------VAVFSL------------ 82 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE-------------------EEEEES------------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe-------------------EEEEeC------------
Confidence 3466665579999999999999999999998776543322222 333221
Q ss_pred HHcCCCCCCHHHHHHHHHH--Hc--hHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 005205 553 IRYGRLSATEEEVYDAARR--AA--IHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSALD 627 (709)
Q Consensus 553 I~~g~~~~s~~ei~~A~~~--a~--l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaLD 627 (709)
+.+.+++..-+-. ++ +++.. .| .||++++||++.|...+.++++.|.|+|+..+|
T Consensus 83 ------Ems~~ql~~Rlls~~~~v~~~~l~-------------~g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 ------EMSAEQLALRALSDLTSINMHDLE-------------SG-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ------SSCHHHHHHHHHHHHHCCCHHHHH-------------HT-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ------CCCHHHHHHHHHHHhhCCCHHHHh-------------cC-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 2344444332211 11 11110 12 688888888888888888888888888765544
No 200
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.08 E-value=1.3e-05 Score=86.25 Aligned_cols=45 Identities=9% Similarity=0.043 Sum_probs=33.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc----CCCeEEEEecCchHH
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLA----NNRTSIFIAHRLTTA 657 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~----~~~TvIvIaHRlsti 657 (709)
.+|.+|+|||+... |...-..+.+.+.+.. .+.++|+++|+....
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999886 8777777776665443 366888889988543
No 201
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.08 E-value=3.3e-06 Score=92.66 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=35.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI 523 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di 523 (709)
++..++++|++||||||++.-|++.+.+..++|.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999999889998866664
No 202
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.99 E-value=1.3e-06 Score=86.07 Aligned_cols=49 Identities=22% Similarity=0.148 Sum_probs=42.1
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE 529 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~ 529 (709)
..++|++++|+|+|||||||+++.|.++++|..|.|.+.+.|....+..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 4678999999999999999999999999999999998877776555543
No 203
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.98 E-value=1.1e-06 Score=84.05 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=33.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~ 524 (709)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 579999999999999999999999875 88999987665
No 204
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.89 E-value=3.1e-06 Score=90.51 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=25.5
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhcC
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~rl 508 (709)
-+++|+.+.|.|++|||||||+.-++.-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999887764
No 205
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.87 E-value=2.5e-05 Score=81.27 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH----------HHHHHHHHHHhcC-----CCeEEEEecCchH-----
Q 005205 597 SGGEKQRVALARAFLKAPPILLCDEATSALDSTT----------EAEILNALKSLAN-----NRTSIFIAHRLTT----- 656 (709)
Q Consensus 597 SGGQrQRiaIARAll~~p~ILILDEaTSaLD~~t----------E~~I~~~L~~l~~-----~~TvIvIaHRlst----- 656 (709)
++++++|-.+++|...+|.+|++||+.+-++... ...+...++.... +..+|..|++...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3678888888888888999999999988765432 1233444444322 2345667887543
Q ss_pred HhhcCeEEEEe
Q 005205 657 AMQCDEIIVLE 667 (709)
Q Consensus 657 i~~aD~Iivl~ 667 (709)
.+.+|+++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 34577776654
No 206
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.85 E-value=2e-06 Score=91.79 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=38.6
Q ss_pred CcccceeeeeEeeCCcE--EEEEcCCCccHHHHHHHHhcCCCCCCC
Q 005205 471 ERKILDGVSFVVPAGKS--VAIVGTSGSGKSTILRLLFRSFDTHSG 514 (709)
Q Consensus 471 ~~~vL~~isl~I~~Ge~--vaIVG~SGsGKSTL~~LL~rly~p~~G 514 (709)
...+++.++..|+.|+. +.+.||+|+||||+++.+++...+..+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 35688999999999998 999999999999999999998766554
No 207
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.83 E-value=2.1e-06 Score=86.56 Aligned_cols=70 Identities=23% Similarity=0.323 Sum_probs=49.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHh---cCCCCCCCEE--------EECCEeCCCCC-HHHhhcceEEEc------CCCCCCc
Q 005205 485 GKSVAIVGTSGSGKSTILRLLF---RSFDTHSGSI--------RIDGQDICEVT-LESLRKSIGVVP------QDTVLFN 546 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~---rly~p~~G~I--------~idG~di~~~~-~~~lR~~i~~V~------Q~~~LF~ 546 (709)
.-.++|+|||||||||+++.|+ |+...+.|.+ .-.|+|+.+.. ...+.+++.+++ |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 4589999999999999999998 5555566666 24566666543 456666666766 5566666
Q ss_pred hhHHHHHH
Q 005205 547 DTIFHNIR 554 (709)
Q Consensus 547 gTIreNI~ 554 (709)
..|.+||+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 66666654
No 208
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.82 E-value=1.6e-06 Score=83.42 Aligned_cols=41 Identities=32% Similarity=0.438 Sum_probs=34.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCCC--EEEECCEeCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG--SIRIDGQDIC 524 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G--~I~idG~di~ 524 (709)
++|+.++|+|++||||||++++|.+.+.| .| .|.+||..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998866 67 7777875554
No 209
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.81 E-value=5.4e-06 Score=81.01 Aligned_cols=57 Identities=21% Similarity=0.375 Sum_probs=39.3
Q ss_pred EEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhc----CC----CCCCCEEEECCEe
Q 005205 465 HFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR----SF----DTHSGSIRIDGQD 522 (709)
Q Consensus 465 sF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~r----ly----~p~~G~I~idG~d 522 (709)
+|+|++..++++++|++.+++ +++++|++|+|||||++.+.+ .| .++.+.+.++|.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 567887778999999998887 589999999999999999986 23 2345666666643
No 210
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.76 E-value=2e-05 Score=87.07 Aligned_cols=65 Identities=15% Similarity=0.280 Sum_probs=44.3
Q ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHHHhc-CCCeEEEEecCc-hHHhh-cCeEEE-EeCCEEEEecCh
Q 005205 613 APPILLCDEATSALDS-TTEAEILNALKSLA-NNRTSIFIAHRL-TTAMQ-CDEIIV-LENGKVIEQGSH 677 (709)
Q Consensus 613 ~p~ILILDEaTSaLD~-~tE~~I~~~L~~l~-~~~TvIvIaHRl-sti~~-aD~Iiv-l~~G~Ive~Gth 677 (709)
+|++|++||+..-.+. .+...+...++.+. .++++|+.||+. ..+.. .+++.- ++.|.+++.+.+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 8999999999887764 56677778877654 568888899984 33221 233332 556777766654
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.75 E-value=3.6e-06 Score=100.00 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=29.7
Q ss_pred eeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCC
Q 005205 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (709)
Q Consensus 479 sl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p 511 (709)
+|.+++|+.+.|+||+|||||||++.|++.+.+
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 357899999999999999999999999998743
No 212
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.75 E-value=0.00012 Score=73.49 Aligned_cols=29 Identities=31% Similarity=0.488 Sum_probs=24.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCE
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGS 515 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly~p~~G~ 515 (709)
+|+|||++|+|||||++.|+|-..+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999977666553
No 213
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.71 E-value=0.0001 Score=75.04 Aligned_cols=44 Identities=25% Similarity=0.465 Sum_probs=29.2
Q ss_pred ceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEe
Q 005205 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522 (709)
Q Consensus 475 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~d 522 (709)
++++++..++| +.|+||+|+|||||++.|++.+... -+.+++.+
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 44455555555 9999999999999999999876422 35555543
No 214
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.67 E-value=9.7e-05 Score=79.19 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=27.8
Q ss_pred ccceeeeeE---eeCCcEEEEEcCCCccHHHHHHHHhcC
Q 005205 473 KILDGVSFV---VPAGKSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 473 ~vL~~isl~---I~~Ge~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+-|+.+ +. +++|+.+.|.|++|||||||+.-++.-
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445554 33 899999999999999999999766643
No 215
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.64 E-value=4.7e-05 Score=76.56 Aligned_cols=133 Identities=13% Similarity=0.130 Sum_probs=73.5
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCC-chhHHHHHHcCCCC
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTIFHNIRYGRLS 559 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF-~gTIreNI~~g~~~ 559 (709)
.+.+|+.+.++|+|||||||++.+++--.....|. ...+.++.|.|... .-++.+|+......
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 34679999999999999999887664221111111 13467777777654 34677777432110
Q ss_pred CCHHHHHHHHHHHchHHHHHhCCCCccccccC----CCCC---CChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHH
Q 005205 560 ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGE----RGLK---LSGGEKQRVALARAFLKAPPILLCDEATS-ALDSTTE 631 (709)
Q Consensus 560 ~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe----~G~~---LSGGQrQRiaIARAll~~p~ILILDEaTS-aLD~~tE 631 (709)
.- ...-|+...... .+.+ -..|+-.+. .+.-+++-+++|+||+-. .+|....
T Consensus 136 ~~------------------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 136 EP------------------GKSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp CT------------------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHH
T ss_pred cc------------------CceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHH
Confidence 00 001122111111 1111 134555454 344689999999999976 4777766
Q ss_pred HHHHHHHHHhcCCCeEEE
Q 005205 632 AEILNALKSLANNRTSIF 649 (709)
Q Consensus 632 ~~I~~~L~~l~~~~TvIv 649 (709)
..+.+.+.+...++.+|+
T Consensus 196 ~~~l~~i~~~~~~~~~il 213 (235)
T 3llm_A 196 LVVLRDVVQAYPEVRIVL 213 (235)
T ss_dssp HHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHhhCCCCeEEE
Confidence 545555554444443333
No 216
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.64 E-value=7.6e-06 Score=86.45 Aligned_cols=107 Identities=13% Similarity=0.159 Sum_probs=67.4
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHH
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHN 552 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreN 552 (709)
+-|+++.--+++|+.+.|.|++|+|||||+.-++.-.- ..| ..+.|++
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g------------------~~vl~~s------------- 103 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS-DND------------------DVVNLHS------------- 103 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH-TTT------------------CEEEEEE-------------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC------------------CeEEEEE-------------
Confidence 45777666699999999999999999999877764210 001 1233332
Q ss_pred HHcCCCCCCHHHHHHHHHHH--chHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 005205 553 IRYGRLSATEEEVYDAARRA--AIHDTIMNFPAKYSTVVGERGLKLSGGEKQRVALARAFLKAPPILLCDEATSAL 626 (709)
Q Consensus 553 I~~g~~~~s~~ei~~A~~~a--~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQRiaIARAll~~p~ILILDEaTSaL 626 (709)
.+.+.+++.+-+... ++. +.++-.|- ..||++++||++.|-..+.++++++.|+|+..+
T Consensus 104 -----lE~s~~~l~~R~~~~~~~i~--~~~l~~~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~ 164 (315)
T 3bh0_A 104 -----LEMGKKENIKRLIVTAGSIN--AQKIKAAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQSV 164 (315)
T ss_dssp -----SSSCHHHHHHHHHHHHTTCC--HHHHHSCH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH
T ss_pred -----CCCCHHHHHHHHHHHHcCCC--HHHHhcCC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH
Confidence 233455554332221 111 11110110 128999999999999999999999999987543
No 217
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.64 E-value=2.5e-05 Score=81.92 Aligned_cols=144 Identities=22% Similarity=0.199 Sum_probs=75.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCC-CCCCH
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR-LSATE 562 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~-~~~s~ 562 (709)
++.+|||||++|+|||||++.|+|.- +.+.. ..+....++..++++|+..- +.+.+ |....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s----~~~~tTr~~~~gi~~~~~~~--------i~~iDTpG~~~ 68 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITS----RKAQTTRHRIVGIHTEGAYQ--------AIYVDTPGLHM 68 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECC----CCSSCCSSCEEEEEEETTEE--------EEEESSSSCCH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccC----CCCCcceeeEEEEEEECCee--------EEEEECcCCCc
Confidence 34489999999999999999999852 22211 11111224456888876531 11221 22221
Q ss_pred HHHHHHHHHHchHHHHHhCCC---Cccccc--cCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHHH-HHHH
Q 005205 563 EEVYDAARRAAIHDTIMNFPA---KYSTVV--GERGLKLSGGEKQRVALARAFL--KAPPILLCDEATSALDSTT-EAEI 634 (709)
Q Consensus 563 ~ei~~A~~~a~l~~~I~~Lp~---G~dT~v--Ge~G~~LSGGQrQRiaIARAll--~~p~ILILDEaTSaLD~~t-E~~I 634 (709)
+-...... ++...... ..|..+ -+... +|+|++ .+++++. ..|.|+++ +-+|... ...+
T Consensus 69 -~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~ 135 (301)
T 1ega_A 69 -EEKRAINR----LMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADL 135 (301)
T ss_dssp -HHHHHHHH----HHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHH
T ss_pred -cchhhHHH----HHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHH
Confidence 11111111 12111111 223221 12223 999886 5666666 67888888 5677665 4455
Q ss_pred HHHHHHhcC--C--CeEEEEecCchHHh
Q 005205 635 LNALKSLAN--N--RTSIFIAHRLTTAM 658 (709)
Q Consensus 635 ~~~L~~l~~--~--~TvIvIaHRlsti~ 658 (709)
.+.++++.+ + .++.+.||.-.-+.
T Consensus 136 ~~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 136 LPHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp HHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred HHHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 555555433 2 35555567654443
No 218
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.63 E-value=1.6e-05 Score=85.32 Aligned_cols=31 Identities=16% Similarity=0.466 Sum_probs=26.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHS 513 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~ 513 (709)
+++..+.|.||+|+|||||++.+++...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 5688999999999999999999998776543
No 219
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.63 E-value=3e-05 Score=85.76 Aligned_cols=194 Identities=16% Similarity=0.165 Sum_probs=98.4
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC------------CCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCch-hHHHH
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSF------------DTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHN 552 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly------------~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~g-TIreN 552 (709)
-++||||++|+|||||++.|+|.. +|.+|.+.++|.++.-++..-+|+..++.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 379999999999999999999985 37889999999988767766677777777777766643 34556
Q ss_pred HHcCC---------CCCCHHHHHHHHHHHchHHHHHhCCCCccc-cccCCCCCCChHH--HHHH--HHHHHh--ccCCCE
Q 005205 553 IRYGR---------LSATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKLSGGE--KQRV--ALARAF--LKAPPI 616 (709)
Q Consensus 553 I~~g~---------~~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT-~vGe~G~~LSGGQ--rQRi--aIARAl--l~~p~I 616 (709)
+...+ ...++++. ++ .+.+... |.-. .++.+--.+..-+ .+.+ .+++.+ +...++
T Consensus 261 i~~ad~vllv~d~~~~~~~~~~-~i------~~~l~~~--~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 261 IEKADVVVIVLDATQGITRQDQ-RM------AGLMERR--GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHCSEEEEEEETTTCCCHHHH-HH------HHHHHHT--TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HhhCCEEEEEEeCCCCCCHHHH-HH------HHHHHHc--CCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 65432 11233321 11 1222221 1111 1111110011101 1111 445544 345565
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHh-hc---------CeEEEEeC-----CEEEEecChHHHh
Q 005205 617 LLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QC---------DEIIVLEN-----GKVIEQGSHDDLL 681 (709)
Q Consensus 617 LILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~-~a---------D~Iivl~~-----G~Ive~Gth~eLl 681 (709)
+ +|||++.+.-..+++.+.+.....+.-+-||+|+.+- .+ =+|...-. =.+|-.++..+++
T Consensus 332 ~----~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~~~~~ki~y~~q~~~~p~~~~~~~n~~~~~ 407 (439)
T 1mky_A 332 I----FTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKVLAFTNLPRGLKIFFGVQVDIKPPTFLFFVNSIEKV 407 (439)
T ss_dssp E----ECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCSTTCCEEEEEEEETTTTEEEEEESCSTTC
T ss_pred E----EEECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCCCCcEEEEEEecCCCCCEEEEEEcCcccC
Confidence 5 5999999988888888766554433334455554321 11 13433221 2345555655666
Q ss_pred hcccHHHHHHHhh
Q 005205 682 TKAGRYAQLWGQQ 694 (709)
Q Consensus 682 ~~~g~Y~~l~~~q 694 (709)
. ..|.+....+
T Consensus 408 ~--~~y~r~l~~~ 418 (439)
T 1mky_A 408 K--NPQKIFLRKL 418 (439)
T ss_dssp C--HHHHHHHHHH
T ss_pred C--HHHHHHHHHH
Confidence 3 3366666554
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.57 E-value=7.8e-06 Score=80.90 Aligned_cols=44 Identities=30% Similarity=0.396 Sum_probs=39.0
Q ss_pred eEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCC--EEEECCEeC
Q 005205 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG--SIRIDGQDI 523 (709)
Q Consensus 480 l~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G--~I~idG~di 523 (709)
+.+++|..++|+|++||||||+++.|.+.+.|..| .+.+||.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45789999999999999999999999999988889 899986443
No 221
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.56 E-value=4.7e-05 Score=80.31 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTH 512 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly~p~ 512 (709)
++..+.|.||+|+|||||++.+.+...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 45689999999999999999999866443
No 222
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.55 E-value=2.7e-05 Score=73.96 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG 520 (709)
.|+.++|+|++||||||++++|++.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 56664
No 223
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.49 E-value=0.00014 Score=76.11 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=43.6
Q ss_pred ee-eeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC
Q 005205 476 DG-VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (709)
Q Consensus 476 ~~-isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~ 526 (709)
++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|.+.-
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 35 777776 999999999999999999999999999999999988776543
No 224
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.49 E-value=1.4e-05 Score=85.46 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=47.0
Q ss_pred cccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC
Q 005205 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (709)
Q Consensus 472 ~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~ 524 (709)
..+++++++++++|.+++|+|++|+|||||++.|++.+.+..|+|.+-+.|..
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 46889999999999999999999999999999999999888888887666554
No 225
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.48 E-value=2.4e-05 Score=78.64 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=31.7
Q ss_pred ceeeeeEee---CCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEE
Q 005205 475 LDGVSFVVP---AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518 (709)
Q Consensus 475 L~~isl~I~---~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~i 518 (709)
|.++|++++ +|..++|.|++||||||++++|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 444445444 8999999999999999999999999988 666654
No 226
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.48 E-value=1.4e-05 Score=78.63 Aligned_cols=69 Identities=22% Similarity=0.338 Sum_probs=43.1
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhcCCCC-CCCEE----------EECCEeCCCCCHHHhhcceEEEcCCCCCCchhH
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSI----------RIDGQDICEVTLESLRKSIGVVPQDTVLFNDTI 549 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p-~~G~I----------~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTI 549 (709)
...+|..++|+|+||||||||++.|...++. ..+.+ .+||.+..-++.+.+.+.+ .|+.+++.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL---KEGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHH---HTTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHH---HcCCCEEeHHh
Confidence 4578999999999999999999999887742 11111 1355555555666655432 34444444433
Q ss_pred HHH
Q 005205 550 FHN 552 (709)
Q Consensus 550 reN 552 (709)
.+|
T Consensus 85 ~~~ 87 (204)
T 2qor_A 85 ANN 87 (204)
T ss_dssp TTE
T ss_pred CCC
Confidence 333
No 227
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.40 E-value=0.00012 Score=76.35 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCCCEE
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I 516 (709)
...+.|+||+|+||||+++.|.+...+..|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35799999999999999999999887766643
No 228
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.38 E-value=7.3e-05 Score=74.43 Aligned_cols=28 Identities=11% Similarity=0.235 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
+++..+.|+||+|+|||||++.+.....
T Consensus 50 ~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 50 DGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp CSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987654
No 229
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.38 E-value=0.00016 Score=70.50 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.4
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSFDTH 512 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly~p~ 512 (709)
..+.|.||+|+|||||++.++......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999998765433
No 230
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.36 E-value=5.9e-06 Score=80.65 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=38.8
Q ss_pred EEEEEcCCCccHHHHHHHHhc------CCCCCCCEEEECCE--eCCCCCH--------HHhhcceEEEcCCCCCCchhHH
Q 005205 487 SVAIVGTSGSGKSTILRLLFR------SFDTHSGSIRIDGQ--DICEVTL--------ESLRKSIGVVPQDTVLFNDTIF 550 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r------ly~p~~G~I~idG~--di~~~~~--------~~lR~~i~~V~Q~~~LF~gTIr 550 (709)
.++|+|++||||||++++|.. +.+|..|...++.. |-...+. ..+++....+.|+..+++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999998 34444443222110 0000110 0023333556677788888888
Q ss_pred HHHHcC
Q 005205 551 HNIRYG 556 (709)
Q Consensus 551 eNI~~g 556 (709)
+|+.|.
T Consensus 82 ~~~~~~ 87 (205)
T 2jaq_A 82 EDPIFM 87 (205)
T ss_dssp THHHHH
T ss_pred hhHHHH
Confidence 887763
No 231
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.34 E-value=0.00011 Score=71.05 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=27.2
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhc----CCCCC----CCEEEECCE
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR----SFDTH----SGSIRIDGQ 521 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~r----ly~p~----~G~I~idG~ 521 (709)
.+++++|++.++. +++++|++|+|||||++.+.+ -|.|+ .+.+.++|.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 4788999998877 889999999999999999987 33333 345555553
No 232
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.34 E-value=0.00032 Score=73.24 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=27.8
Q ss_pred eeEeeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 479 sl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
++.++++..+.|.||+|+|||||++.|++..
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 3457899999999999999999999999865
No 233
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.34 E-value=0.00027 Score=72.77 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=25.0
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
++++..+.|.||+|+|||||++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4678889999999999999999998864
No 234
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.29 E-value=5e-05 Score=81.33 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=36.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~ 525 (709)
+++.+++|+|++|||||||++.|.+.+.|..|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4578999999999999999999999998899999887776543
No 235
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.28 E-value=0.00015 Score=68.90 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
++|.+++|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999999864
No 236
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.27 E-value=2e-05 Score=78.05 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=34.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHH
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTA 657 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti 657 (709)
.+|.+|++||+-. +|.+....+.+.+++...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4578999999876 78888778888887655566788888876543
No 237
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.21 E-value=4.3e-05 Score=81.19 Aligned_cols=43 Identities=12% Similarity=0.269 Sum_probs=33.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchH
Q 005205 613 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTT 656 (709)
Q Consensus 613 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlst 656 (709)
++.|+++|| ...+++.....+.+.+++...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 5678888888888888886655567777776653
No 238
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.19 E-value=0.001 Score=61.39 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=25.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHS 513 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~ 513 (709)
+.+.-+-|.||+|+|||++++.|........
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~ 52 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ 52 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccC
Confidence 4567799999999999999999988654433
No 239
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.11 E-value=0.00047 Score=76.49 Aligned_cols=57 Identities=9% Similarity=0.121 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeC-CCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHH
Q 005205 598 GGEKQRVALARAFLKAPPILLCDE-ATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTA 657 (709)
Q Consensus 598 GGQrQRiaIARAll~~p~ILILDE-aTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti 657 (709)
+.|++-...++..+++++++|+.. ++..+.... ..+.+.+++ .++.+|+|.+.....
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccch
Confidence 358888889999999999877654 444455544 456666655 578899999887654
No 240
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.11 E-value=0.00021 Score=68.93 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=26.8
Q ss_pred eeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC
Q 005205 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 477 ~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl 508 (709)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999875
No 241
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.06 E-value=0.00053 Score=73.30 Aligned_cols=40 Identities=28% Similarity=0.423 Sum_probs=30.9
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCE
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ 521 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~ 521 (709)
..+|..+-|.||+|+||||+++.+++.......-+.+++.
T Consensus 67 ~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 67 KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence 3567889999999999999999999877644444555443
No 242
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.05 E-value=0.0002 Score=75.56 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.4
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhc
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
-+++|+.+.|.|++|||||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999976664
No 243
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.02 E-value=0.0012 Score=70.82 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=23.6
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhc
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
-+++|+.+.|.|++|+|||||+.-++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 479999999999999999999965543
No 244
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.00 E-value=7.9e-05 Score=80.14 Aligned_cols=58 Identities=28% Similarity=0.369 Sum_probs=37.0
Q ss_pred CceEEEEeEEEEecCCcccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 005205 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (709)
Q Consensus 456 ~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG 520 (709)
.+.|.|+|++..|. .+.++++++|+| +|||++|+|||||++.|++...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 35799999998885 457889999976 99999999999999999987666665544333
No 245
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.97 E-value=0.00018 Score=73.19 Aligned_cols=42 Identities=29% Similarity=0.455 Sum_probs=34.6
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~ 524 (709)
..+++..+.|+|++||||||+++.|.+.+. .|.+.+||-+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 466788999999999999999999998775 367888885443
No 246
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.94 E-value=0.00021 Score=68.82 Aligned_cols=41 Identities=29% Similarity=0.390 Sum_probs=34.2
Q ss_pred eEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEE-EECC
Q 005205 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-RIDG 520 (709)
Q Consensus 480 l~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I-~idG 520 (709)
+..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 3456899999999999999999999999888777765 4554
No 247
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.94 E-value=0.00057 Score=75.52 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=29.5
Q ss_pred cceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 474 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 455555458999999999999999999998776544
No 248
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.88 E-value=0.00021 Score=69.81 Aligned_cols=32 Identities=34% Similarity=0.520 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG 520 (709)
...++|+|++||||||+++.|.+.+ |.+.+|+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 5689999999999999999998866 5556655
No 249
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.85 E-value=0.00059 Score=63.62 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=24.4
Q ss_pred eeeEeeCCcEEEEEcCCCccHHHHHHHHh-cCCC
Q 005205 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLF-RSFD 510 (709)
Q Consensus 478 isl~I~~Ge~vaIVG~SGsGKSTL~~LL~-rly~ 510 (709)
..+++.+| ..+|+||+|||||||+..|. .+|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34455554 89999999999999999886 3443
No 250
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.83 E-value=0.0038 Score=62.97 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
++..-+.|.||+|+||||+++.+++.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445668999999999999999998754
No 251
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.83 E-value=0.00094 Score=62.64 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.7
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly 509 (709)
-+++|+|++|+|||||++.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999864
No 252
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.82 E-value=1.6e-05 Score=85.69 Aligned_cols=86 Identities=14% Similarity=0.021 Sum_probs=63.3
Q ss_pred CCChHHHHHHHHHHHhc-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchHHhhcCe
Q 005205 595 KLSGGEKQRVALARAFL-KAPPILLCDE---AT------SALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDE 662 (709)
Q Consensus 595 ~LSGGQrQRiaIARAll-~~p~ILILDE---aT------SaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRlsti~~aD~ 662 (709)
.+|+|++||..+++++. .+|++++||| |+ +++|......+.+.|+++.+ +.|+|+++|--..-+-+|+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 45678888999999875 5999999999 54 68999999999999977655 8999999987545555777
Q ss_pred EEEEeCCEEEEecChHHHhh
Q 005205 663 IIVLENGKVIEQGSHDDLLT 682 (709)
Q Consensus 663 Iivl~~G~Ive~Gth~eLl~ 682 (709)
+.++++ +++.|+.+||.+
T Consensus 338 i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 338 KAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp HHHHHH--HTSCCCCSSCCC
T ss_pred HHHHHH--HhcccchhHhhc
Confidence 777764 556667777754
No 253
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.78 E-value=0.0006 Score=73.78 Aligned_cols=41 Identities=24% Similarity=0.402 Sum_probs=35.0
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhcC-----------CCCCCCEEEECCE
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFRS-----------FDTHSGSIRIDGQ 521 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~rl-----------y~p~~G~I~idG~ 521 (709)
.++.|.+++|||++|+|||||++.|.+. .+|+.|.|.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 5678899999999999999999999998 6888999888763
No 254
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.75 E-value=0.00043 Score=66.36 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCC---CCEEEECCEe
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQD 522 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly~p~---~G~I~idG~d 522 (709)
-..++|+|+||||||||++.|++.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3579999999999999999998876543 3778887755
No 255
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.74 E-value=0.0007 Score=64.58 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++++|++|+|||||++.|++-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999984
No 256
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.69 E-value=0.0038 Score=78.61 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=30.3
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEE-EECC
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-RIDG 520 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I-~idG 520 (709)
+++|+.+.|.||+|+|||||+.-++.......|.+ ++++
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 89999999999999999999988876554444433 3444
No 257
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.65 E-value=0.0085 Score=62.10 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
++..+.|.||+|+||||+++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45578999999999999998887655
No 258
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.65 E-value=0.0052 Score=67.35 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEE
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~i 518 (709)
++..++++|++|+||||++.-|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46789999999999999999888877654344443
No 259
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.64 E-value=0.0017 Score=68.05 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=25.2
Q ss_pred eEeeCCcEEEEEcCCCccHHHHHHHHhc
Q 005205 480 FVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 480 l~I~~Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
--+++|..+.|.||+|+|||||+.-++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999988874
No 260
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.63 E-value=0.00087 Score=65.31 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 261
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.63 E-value=0.004 Score=66.60 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
++...+.|.||+|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 567789999999999999999998754
No 262
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.61 E-value=0.00075 Score=72.77 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=45.5
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchHHhhcCeEEEE
Q 005205 603 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVL 666 (709)
Q Consensus 603 RiaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRlsti~~aD~Iivl 666 (709)
+.+|+++|..+|+++++|||| |.++ +..+++....|.+++.++|..+....+||++.|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~---~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLET---VETALRAAETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHH---HHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHH---HHHHHHHHhcCCEEEEEECcchHHHHHHHHHHh
Confidence 569999999999999999999 7665 334455555689999999998876667776443
No 263
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.61 E-value=0.00096 Score=63.78 Aligned_cols=27 Identities=37% Similarity=0.658 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSFDTHS 513 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly~p~~ 513 (709)
+++|||++|+|||||++.+.+.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~ 30 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDL 30 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccC
Confidence 699999999999999999999754433
No 264
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.54 E-value=0.00099 Score=72.19 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=43.5
Q ss_pred cCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhc-CCCeEEEEecCchHH-------------hhcCeEEEEeCC
Q 005205 612 KAPPILLCDEATSALD---STTEAEILNALKSLA-NNRTSIFIAHRLTTA-------------MQCDEIIVLENG 669 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD---~~tE~~I~~~L~~l~-~~~TvIvIaHRlsti-------------~~aD~Iivl~~G 669 (709)
..|.++++||+=.-++ +.....+.+.+++.+ .+..++++||+++-+ .+|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 4578999999988885 566677777777664 467899999999765 456677777543
No 265
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.54 E-value=0.0021 Score=61.51 Aligned_cols=36 Identities=39% Similarity=0.584 Sum_probs=28.0
Q ss_pred EEEEEcCCCccHHHHHH-HHhcC----CCCCCC----EEEECCEe
Q 005205 487 SVAIVGTSGSGKSTILR-LLFRS----FDTHSG----SIRIDGQD 522 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~-LL~rl----y~p~~G----~I~idG~d 522 (709)
+++|||++|+|||||++ ++.+- |.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 69999999999999996 55554 677777 66677643
No 266
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.54 E-value=0.00047 Score=73.78 Aligned_cols=28 Identities=25% Similarity=0.590 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
..+..+.|.||+|+||||+++.+.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677899999999999999999987653
No 267
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.53 E-value=0.0026 Score=61.74 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=31.0
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 005205 612 KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 655 (709)
Q Consensus 612 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRls 655 (709)
.++.++++||+-. ++.+....+.+.+++...+..+|+++.+..
T Consensus 101 ~~~~vliiDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEADA-LTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeChhh-cCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 3688999999754 677777778788877555556666776654
No 268
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.51 E-value=0.0031 Score=65.54 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=23.2
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+++...+.|.||+|+|||+|++.|++-.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444568889999999999999999765
No 269
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.51 E-value=0.00046 Score=73.33 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=33.7
Q ss_pred ccceeeeeEeeCCcE--EEEEcCCCccHHHHHHHHhcCC
Q 005205 473 KILDGVSFVVPAGKS--VAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~--vaIVG~SGsGKSTL~~LL~rly 509 (709)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 578899999999999 9999999999999999988753
No 270
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.50 E-value=0.0014 Score=62.22 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
.|..+.|+|+|||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998654
No 271
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.49 E-value=0.0011 Score=63.37 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.+|..++|+|++||||||+++.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998643
No 272
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.41 E-value=0.0004 Score=68.08 Aligned_cols=88 Identities=24% Similarity=0.253 Sum_probs=53.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCC----CCchhHHHHHH--cC-CC-
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV----LFNDTIFHNIR--YG-RL- 558 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~----LF~gTIreNI~--~g-~~- 558 (709)
.++|+|++||||||+++.|.+.+++....+. ++. +|. ++..++++.+. ++ .+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-------------------~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~ 61 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-------------------TLA-FPRYGQSVAADIAAEALHGEHGDLAS 61 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-------------------EEE-SSEEEEEEEEEEHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-------------------EEe-ecCCCCcchhhHHHHHHcccccccCC
Confidence 6899999999999999999998864432322 111 111 12445555542 11 01
Q ss_pred CCCHHHHHHHHHHHchHHHHHhCCCCccccccCCCC
Q 005205 559 SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGL 594 (709)
Q Consensus 559 ~~s~~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~ 594 (709)
+...+.+..++..+...+.|..++.+.++.|.++..
T Consensus 62 ~~~~~~~~~~~~r~~~~~~i~~~l~~g~~vi~D~~~ 97 (214)
T 1gtv_A 62 SVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYV 97 (214)
T ss_dssp EHHHHHHHHHHHHHEEHHHHHHEEEEEEEEEEEEEE
T ss_pred CHhHHHHHHHHHHhhhHHHHHHHhhCCCEEEECCCc
Confidence 122334444455554467788777777888888764
No 273
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.40 E-value=0.0026 Score=63.35 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=34.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecC-----------chHHhhcCeEEEEe
Q 005205 613 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHR-----------LTTAMQCDEIIVLE 667 (709)
Q Consensus 613 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHR-----------lsti~~aD~Iivl~ 667 (709)
+++++++||+-- |+.+.-+ ....|.+ .+.++|++-|+ ...+..||.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve-~l~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICE-VANILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHH-HHHHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHH-HHHHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6654222 2233444 48899999993 34566899998753
No 274
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.34 E-value=0.0057 Score=56.18 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
+.+.-+-|.||+|+|||++++.|.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 4566799999999999999999987543
No 275
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.33 E-value=0.0018 Score=60.88 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.++|+|++||||||+++.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 276
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.31 E-value=0.00051 Score=81.56 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=29.9
Q ss_pred eeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 478 isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
.++.+++|+.+.|+||+|+|||||++.|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999999999999998763
No 277
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.30 E-value=0.0021 Score=62.33 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.+|..++|.|++||||||+++.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999877
No 278
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.29 E-value=0.0021 Score=61.53 Aligned_cols=26 Identities=27% Similarity=0.472 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+|..+.|.|++||||||+++.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998754
No 279
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.27 E-value=0.0021 Score=61.40 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
++..+.|+|++||||||+.+.|+.-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999997654
No 280
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.25 E-value=0.015 Score=61.20 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=24.6
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.+|..-+.|.||+|+|||||++.+++..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4566789999999999999999999865
No 281
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.25 E-value=0.0023 Score=61.70 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCccHHHHH-HHHhcC
Q 005205 484 AGKSVAIVGTSGSGKSTIL-RLLFRS 508 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~-~LL~rl 508 (709)
+|+.+.++|+.||||||++ +++.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5889999999999999997 666554
No 282
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.21 E-value=0.0025 Score=62.85 Aligned_cols=32 Identities=38% Similarity=0.387 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG 520 (709)
++..++|+|++||||||+++.|..+ |...+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 4568999999999999999999983 5555654
No 283
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.20 E-value=0.0017 Score=68.02 Aligned_cols=34 Identities=41% Similarity=0.461 Sum_probs=30.2
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhc
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
..+|+..+.+ .|+-++|+|+||+||||++..|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4678888888 799999999999999999988876
No 284
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.19 E-value=0.011 Score=63.02 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=24.1
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.++..-+.|.||+|+|||||++.++...
T Consensus 81 ~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 81 RKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 3566679999999999999999999754
No 285
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.19 E-value=0.0021 Score=61.18 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcC----CCCCCC
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRS----FDTHSG 514 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rl----y~p~~G 514 (709)
.-+++++|++|+|||||++.+.+- |.|+.|
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 347999999999999999999875 355556
No 286
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.18 E-value=0.0024 Score=66.15 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=29.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG 520 (709)
++|..+.|+|+|||||||+++.|+.-++ .|.+.|++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3467899999999999999999987553 46677776
No 287
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.15 E-value=0.0023 Score=61.43 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
++|..+.|+|++||||||+++.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998644
No 288
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.15 E-value=0.0024 Score=68.61 Aligned_cols=59 Identities=29% Similarity=0.341 Sum_probs=41.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHHcCCCCCCHHHHH
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY 566 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~~ei~ 566 (709)
+++|||++|+|||||++.|.+.. + ++.+++.. |+..|+.+. ..+++++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~~------------------Ti~pn~g~~--~v~~~~l~ 51 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPFA------------------TIDKNVGVV--PLEDERLY 51 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCGG------------------GGSTTEEEE--ECCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCCc------------------eeccceeeE--ecChHHHH
Confidence 58999999999999999999874 3 22233322 566665554 35678888
Q ss_pred HHHHHHchHH
Q 005205 567 DAARRAAIHD 576 (709)
Q Consensus 567 ~A~~~a~l~~ 576 (709)
.+++.++.++
T Consensus 52 ~~~~~~~~~~ 61 (368)
T 2dby_A 52 ALQRTFAKGE 61 (368)
T ss_dssp HHHHHHCBTT
T ss_pred HHHHHhcccc
Confidence 8888877654
No 289
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.13 E-value=0.0026 Score=63.72 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.9
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcC
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rl 508 (709)
-++|.+++|+|++||||||+.+.|.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999863
No 290
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.12 E-value=0.003 Score=61.95 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=22.3
Q ss_pred eeeEeeCCcEEEEEcCCCccHHHHHHHHh
Q 005205 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (709)
Q Consensus 478 isl~I~~Ge~vaIVG~SGsGKSTL~~LL~ 506 (709)
.++++.+ ..++|+||+|||||||+..|.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 3445555 489999999999999999774
No 291
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.08 E-value=0.0028 Score=59.39 Aligned_cols=20 Identities=50% Similarity=0.762 Sum_probs=18.6
Q ss_pred cEEEEEcCCCccHHHHHHHH
Q 005205 486 KSVAIVGTSGSGKSTILRLL 505 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL 505 (709)
..++|+|++||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 292
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.07 E-value=0.0016 Score=66.28 Aligned_cols=30 Identities=27% Similarity=0.566 Sum_probs=23.7
Q ss_pred eeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC
Q 005205 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 477 ~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl 508 (709)
++.+..++| +.|.||+|+|||||++.+++.
T Consensus 38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 334444555 889999999999999999874
No 293
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.07 E-value=0.0044 Score=66.29 Aligned_cols=36 Identities=28% Similarity=0.529 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHhc-----------CCCCCCCEEEECC
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFR-----------SFDTHSGSIRIDG 520 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~r-----------ly~p~~G~I~idG 520 (709)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4578889888876
No 294
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.07 E-value=0.018 Score=62.89 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=28.0
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG 520 (709)
.=++.+.+.|+|++||||||+++.|+.-+ |-+.++.
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~ 289 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR 289 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEcc
Confidence 34567899999999999999999988643 4455543
No 295
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.06 E-value=0.0021 Score=61.18 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.++..+.|+|++||||||+++.|..-+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998544
No 296
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.03 E-value=0.003 Score=60.73 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+++..++|+|++||||||+++.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998654
No 297
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.01 E-value=0.0032 Score=61.38 Aligned_cols=28 Identities=36% Similarity=0.422 Sum_probs=24.6
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.++|..++|.|++||||||+++.|...+
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999998644
No 298
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.98 E-value=0.0056 Score=67.48 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=26.6
Q ss_pred cceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhc
Q 005205 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 474 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
-|+.+.--+++|+.+.|.|++|+|||||+--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 3444433589999999999999999999865543
No 299
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.97 E-value=0.0026 Score=61.50 Aligned_cols=73 Identities=29% Similarity=0.515 Sum_probs=49.3
Q ss_pred EEEEcCCCccHHHHHHHHhcCC-------------CCCCCEEEECCEeCCCCCHHHhhcceEEEcCCCCCCchhHHHHHH
Q 005205 488 VAIVGTSGSGKSTILRLLFRSF-------------DTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIR 554 (709)
Q Consensus 488 vaIVG~SGsGKSTL~~LL~rly-------------~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNI~ 554 (709)
+.|+||||||||||++-|+.-+ +|-.|+ +||+|..-++.++..+.+ .++-+|-.+.+..| .
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~i---~~g~flE~~~~~g~-~ 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGN-Y 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HTTCEEEEEEETTE-E
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHHH---HcCCEEEEEEEcCc-e
Confidence 7899999999999998876433 455676 488888888877776654 35555555555444 3
Q ss_pred cCCCCCCHHHHHHHH
Q 005205 555 YGRLSATEEEVYDAA 569 (709)
Q Consensus 555 ~g~~~~s~~ei~~A~ 569 (709)
||- +.+++.+++
T Consensus 78 YGt---~~~~v~~~l 89 (186)
T 1ex7_A 78 YGS---TVASVKQVS 89 (186)
T ss_dssp EEE---EHHHHHHHH
T ss_pred eee---ecceeeehh
Confidence 653 345555443
No 300
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.95 E-value=2.3 Score=48.09 Aligned_cols=10 Identities=40% Similarity=0.497 Sum_probs=5.1
Q ss_pred ceeeeeEeeC
Q 005205 475 LDGVSFVVPA 484 (709)
Q Consensus 475 L~~isl~I~~ 484 (709)
++|++++-+.
T Consensus 342 ~~~v~~~y~~ 351 (578)
T 4a82_A 342 IDHVSFQYND 351 (578)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEEEcCC
Confidence 4555555543
No 301
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.95 E-value=0.0035 Score=61.18 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.3
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.++|..++|+|++||||||+++.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999998644
No 302
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.93 E-value=0.0037 Score=60.80 Aligned_cols=28 Identities=36% Similarity=0.430 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly~p 511 (709)
+|..++|.|++||||||+++.|..-+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999886653
No 303
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.93 E-value=0.014 Score=60.77 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+...+.|.||+|+||||+++.+....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999997743
No 304
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.91 E-value=0.0016 Score=62.89 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=25.4
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
..+++..++|+|++||||||+++.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45667899999999999999999998755
No 305
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.89 E-value=0.011 Score=63.00 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=31.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 005205 613 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 655 (709)
Q Consensus 613 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRls 655 (709)
++.++++||+- .++.+....+.+.+++...+..+|+++++..
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 57899999975 4677777788888877555556777777654
No 306
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.89 E-value=0.0038 Score=66.83 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
++..+.|.||+|+|||||++.+.+..
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998754
No 307
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.85 E-value=0.024 Score=59.52 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.6
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly 509 (709)
..+.|.||+|+||||+++.++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 569999999999999999998765
No 308
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.84 E-value=0.0035 Score=59.39 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999998754
No 309
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.76 E-value=0.0028 Score=60.35 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=26.9
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCC---CEEEECCE
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSFDTHS---GSIRIDGQ 521 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly~p~~---G~I~idG~ 521 (709)
..++|+|+||||||||+.-|++.+.+.. |.|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4799999999999999998888765332 55655543
No 310
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.73 E-value=0.0085 Score=62.56 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=21.5
Q ss_pred eeCCcEEEEEcCCCccHHHHH-HHHhcC
Q 005205 482 VPAGKSVAIVGTSGSGKSTIL-RLLFRS 508 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~-~LL~rl 508 (709)
+++| .+-|.||+|||||||+ +++...
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 7899 9999999999999995 444443
No 311
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.72 E-value=0.0049 Score=58.96 Aligned_cols=101 Identities=18% Similarity=0.261 Sum_probs=52.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHh-hcceEEEcCCCCCCchhHHHHHHcCCCCCCH
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGVVPQDTVLFNDTIFHNIRYGRLSATE 562 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~~~l-R~~i~~V~Q~~~LF~gTIreNI~~g~~~~s~ 562 (709)
++..++|+|++||||||+++.|..-+ |-..+| .+++ |... -+ ...-+...+++-+.-|.. ..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~----~~~~i~--------~d~~~~~~~--~~-~~~~~~~~~~~~~~~g~~-~~~ 65 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY----GYTHLS--------AGELLRDER--KN-PDSQYGELIEKYIKEGKI-VPV 65 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH----CCEEEE--------HHHHHHHHH--HC-TTSTTHHHHHHHHHTTCC-CCH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh----CCeEEe--------HHHHHHHHH--hc-cCChHHHHHHHHHHCCCc-CCH
Confidence 35689999999999999999997644 222232 1221 1111 01 112234456665554432 333
Q ss_pred HHHHHHHHHHchHHHHHhCCCCccccccCCCCCCChHHHHH
Q 005205 563 EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKLSGGEKQR 603 (709)
Q Consensus 563 ~ei~~A~~~a~l~~~I~~Lp~G~dT~vGe~G~~LSGGQrQR 603 (709)
+.....+.. .+.+.+..+..|..-.+ .|.-++..|+|.
T Consensus 66 ~~~~~~l~~-~~~~~~~~~~~~~~vi~--dg~~~~~~~~~~ 103 (196)
T 1tev_A 66 EITISLLKR-EMDQTMAANAQKNKFLI--DGFPRNQDNLQG 103 (196)
T ss_dssp HHHHHHHHH-HHHHHHHHCTTCCEEEE--ESCCCSHHHHHH
T ss_pred HHHHHHHHH-HHHhhhccccCCCeEEE--eCCCCCHHHHHH
Confidence 333333333 34555666655543333 255667666654
No 312
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.71 E-value=0.0051 Score=58.12 Aligned_cols=31 Identities=35% Similarity=0.519 Sum_probs=24.2
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEEC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~id 519 (709)
..+.|+|++||||||+++.|... ..|...++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 46899999999999999999872 22555554
No 313
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.69 E-value=0.0044 Score=62.88 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.++|+|++|||||||.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 314
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.65 E-value=0.02 Score=72.20 Aligned_cols=34 Identities=32% Similarity=0.440 Sum_probs=27.0
Q ss_pred ccceeeeeE---eeCCcEEEEEcCCCccHHHHHHHHhc
Q 005205 473 KILDGVSFV---VPAGKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 473 ~vL~~isl~---I~~Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
+-|+.+ +. +++|+.+-|.|++|+|||||+--++.
T Consensus 369 ~~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 369 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 445554 33 89999999999999999999866543
No 315
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.65 E-value=0.004 Score=59.15 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=18.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.++..+.|.|++||||||+++.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 457889999999999999999998544
No 316
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.64 E-value=0.027 Score=62.04 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=24.7
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.++..-+.|.||+|+|||||++.+++..
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 3566889999999999999999999865
No 317
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.63 E-value=0.0062 Score=60.07 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
++|..+.|+|++||||||+++.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998755
No 318
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.60 E-value=0.0096 Score=55.76 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++++|++|+|||||++-+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988764
No 319
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.58 E-value=0.0056 Score=58.48 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
.+.|.|++||||||+++.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988654
No 320
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.55 E-value=0.013 Score=54.77 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhc
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
++.-+++++|++|+|||||++-+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4566899999999999999999876
No 321
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.54 E-value=0.023 Score=63.28 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=24.7
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+++...+-|.||+|+|||++++.+....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 5677789999999999999999998754
No 322
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.50 E-value=0.0049 Score=59.59 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++|||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999653
No 323
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.50 E-value=0.0074 Score=58.54 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.+..+.|+|++||||||+++.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998754
No 324
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.47 E-value=0.012 Score=54.40 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 325
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.47 E-value=0.0073 Score=56.70 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcC
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rl 508 (709)
-+.++|.|+.||||||+.+.|...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 378999999999999999999764
No 326
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.41 E-value=0.0066 Score=57.88 Aligned_cols=25 Identities=44% Similarity=0.600 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+.+++|+|++||||||+.+.|...+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3569999999999999999998744
No 327
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.41 E-value=0.0071 Score=59.25 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+++|.|++||||||+++.|..-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996644
No 328
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.41 E-value=0.011 Score=57.74 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=25.0
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+|+...+.|.||.|+||||++..|++++
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 7777789999999999999999998864
No 329
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.40 E-value=0.0073 Score=59.88 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.++..+.|+|++||||||+++.|..-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998654
No 330
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.40 E-value=0.013 Score=61.28 Aligned_cols=43 Identities=12% Similarity=0.239 Sum_probs=32.1
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHhcCCCeEEEEecCchH
Q 005205 613 APPILLCDEATSALD-STTEAEILNALKSLANNRTSIFIAHRLTT 656 (709)
Q Consensus 613 ~p~ILILDEaTSaLD-~~tE~~I~~~L~~l~~~~TvIvIaHRlst 656 (709)
+++++++||+-. +. .+....+.+.+++...+..+|+++++...
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 789999999854 34 56666677777776667788888888664
No 331
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.38 E-value=0.0075 Score=57.91 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 332
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.35 E-value=0.033 Score=71.15 Aligned_cols=37 Identities=30% Similarity=0.312 Sum_probs=32.1
Q ss_pred Ccccceeee--eEeeCCcEEEEEcCCCccHHHHHHHHhc
Q 005205 471 ERKILDGVS--FVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 471 ~~~vL~~is--l~I~~Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
+.+.|+++. .-+++|+.+.++|++|||||||+..+.-
T Consensus 1065 Gi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1065 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 456788886 5799999999999999999999988763
No 333
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.33 E-value=0.0075 Score=56.69 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.2
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly 509 (709)
..+.|+|++||||||+++.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998644
No 334
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.32 E-value=0.0072 Score=59.66 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.+..+.|+|++||||||+++.|..-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998755
No 335
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.32 E-value=0.0088 Score=59.47 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=24.7
Q ss_pred cCCCEEEEeCCCC-CCC-HHHHHHHHHHHHHhcCCCeEEEEec
Q 005205 612 KAPPILLCDEATS-ALD-STTEAEILNALKSLANNRTSIFIAH 652 (709)
Q Consensus 612 ~~p~ILILDEaTS-aLD-~~tE~~I~~~L~~l~~~~TvIvIaH 652 (709)
++|+++|+||+-. +.+ ..++...++-...+..+.-++..+|
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 5899999999653 233 2233333443334446667777777
No 336
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.32 E-value=0.016 Score=59.03 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=23.4
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcC
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rl 508 (709)
.++...+-|.||+|+||||+++.++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 355668999999999999999999875
No 337
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.31 E-value=0.0082 Score=58.21 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
....++|.|++||||||+++.|..-+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998654
No 338
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.31 E-value=0.038 Score=65.06 Aligned_cols=33 Identities=36% Similarity=0.528 Sum_probs=24.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC-CCCCEEEEC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSFD-THSGSIRID 519 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly~-p~~G~I~id 519 (709)
.+-++||+|+|||++++.|..... ...--|.+|
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~ 556 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRID 556 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe
Confidence 588999999999999999988752 223344444
No 339
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.31 E-value=0.0083 Score=58.28 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=21.1
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rl 508 (709)
..++|+|++||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999875
No 340
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.30 E-value=0.0066 Score=59.58 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+++|+|++||||||+++.|+.-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 341
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.30 E-value=0.0087 Score=55.99 Aligned_cols=23 Identities=43% Similarity=0.535 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+++|+|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998743
No 342
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.29 E-value=0.043 Score=70.15 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=28.9
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-CCEEEECC
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDG 520 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~-~G~I~idG 520 (709)
+++|+.+-|.||+|+|||||+.-++.-.... ...++++.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~ 419 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 419 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 8999999999999999999987665433322 23445554
No 343
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.29 E-value=0.0078 Score=58.36 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 344
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.28 E-value=0.014 Score=56.73 Aligned_cols=21 Identities=24% Similarity=0.670 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++|+|++|+|||||++-+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999997764
No 345
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.24 E-value=0.024 Score=62.45 Aligned_cols=36 Identities=22% Similarity=0.424 Sum_probs=28.3
Q ss_pred eeeeeEeeCCcE--EEEEcCCCccHHHHHHHHhcCCCC
Q 005205 476 DGVSFVVPAGKS--VAIVGTSGSGKSTILRLLFRSFDT 511 (709)
Q Consensus 476 ~~isl~I~~Ge~--vaIVG~SGsGKSTL~~LL~rly~p 511 (709)
+.+.-.|+.|+. +.|.||+|+|||||++.|.+....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 444455666664 999999999999999999987643
No 346
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.22 E-value=0.0093 Score=60.04 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+++..+.|.|++||||||+++.|..-|
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998654
No 347
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.21 E-value=0.0093 Score=57.02 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998755
No 348
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.19 E-value=0.014 Score=61.26 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rl 508 (709)
++..-+-|.||+|+|||||++.++..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45677999999999999999999875
No 349
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.19 E-value=0.0084 Score=57.21 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+..++|+|++||||||+++.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998644
No 350
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.17 E-value=0.0053 Score=63.74 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=19.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
++-.+||.|+|||||||+++.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998744
No 351
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.16 E-value=0.021 Score=54.05 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhc
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
++.=+++++|++|+|||||++-+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4456899999999999999999986
No 352
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.14 E-value=0.014 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999887643
No 353
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.11 E-value=0.01 Score=54.91 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998763
No 354
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.08 E-value=0.01 Score=59.98 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly 509 (709)
-.|+|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998744
No 355
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.08 E-value=0.01 Score=59.81 Aligned_cols=58 Identities=9% Similarity=0.141 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHhc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc----CCCeEEEEecCchH
Q 005205 598 GGEKQRVALARAFL---KAPPILLCDEATSALDSTTEAEILNALKSLA----NNRTSIFIAHRLTT 656 (709)
Q Consensus 598 GGQrQRiaIARAll---~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~----~~~TvIvIaHRlst 656 (709)
.||+.+-.+.|+++ ++++++|+--..+.++. .+..+.+.+.+.. .++++|+++|....
T Consensus 87 ~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 87 KTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred cHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 34556666777774 88887765433334554 4445555665543 25789999987543
No 356
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.07 E-value=0.0096 Score=55.06 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998754
No 357
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.07 E-value=0.012 Score=62.02 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=24.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
+++..+.|+||||||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999998663
No 358
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.02 E-value=0.051 Score=58.50 Aligned_cols=27 Identities=15% Similarity=0.401 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.++..+.|.||+|+|||||++.++...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999999998753
No 359
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.02 E-value=0.024 Score=52.49 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHhc
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
.-+++++|++|+|||||++-+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44799999999999999998865
No 360
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.01 E-value=0.02 Score=59.43 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 005205 613 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 655 (709)
Q Consensus 613 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRls 655 (709)
++.++++||+-. ++......+.+.+++...+..+|+++++..
T Consensus 107 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECccc-CCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 478999999754 455666667777777555566777777654
No 361
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.00 E-value=0.015 Score=55.47 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++|+|++|+|||||++.|++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999875
No 362
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.99 E-value=0.012 Score=54.74 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998743
No 363
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.99 E-value=0.017 Score=53.40 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998875
No 364
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.96 E-value=0.015 Score=55.41 Aligned_cols=21 Identities=38% Similarity=0.706 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++|+|++|+|||||++.|.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999998886
No 365
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.96 E-value=6.4 Score=44.54 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=6.1
Q ss_pred EEEeEEEEecC
Q 005205 460 QFDNVHFSYLT 470 (709)
Q Consensus 460 ~f~nVsF~Y~~ 470 (709)
.++||||.-++
T Consensus 358 ~l~~isl~i~~ 368 (587)
T 3qf4_A 358 VLSGVNFSVKP 368 (587)
T ss_dssp SEEEEEEEECT
T ss_pred ceeceEEEEcC
Confidence 35666666543
No 366
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.96 E-value=0.013 Score=54.40 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998643
No 367
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.95 E-value=0.012 Score=54.12 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++++|++|+|||||++-+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999988874
No 368
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.94 E-value=0.02 Score=55.34 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++|+|++|+|||||++-|.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998875
No 369
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.012 Score=56.11 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+.-+++++|++|+|||||++.|.+-.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33489999999999999999998754
No 370
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.89 E-value=0.013 Score=53.82 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+++++|++|+|||||++-+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998643
No 371
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.88 E-value=0.012 Score=60.73 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHhc
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
...++|+|++||||||+++.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999985
No 372
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.88 E-value=0.013 Score=54.03 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++++|++|+|||||++-+.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998875
No 373
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.88 E-value=0.012 Score=54.03 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++++|++|+|||||++-+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 374
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.87 E-value=0.012 Score=59.72 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+++++|.+|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999863
No 375
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.86 E-value=0.014 Score=59.43 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++..+.|+|++||||||+++.|...
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999874
No 376
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.85 E-value=0.011 Score=60.43 Aligned_cols=22 Identities=45% Similarity=0.771 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++|||++|+|||||++.|++-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988764
No 377
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.84 E-value=0.012 Score=60.07 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+++|+|++|||||||++.|.|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999875
No 378
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.84 E-value=0.013 Score=55.62 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSFDT 511 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly~p 511 (709)
+++|||++|+|||||++.+.+-+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987654
No 379
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.82 E-value=0.013 Score=53.96 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999875
No 380
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.81 E-value=0.014 Score=54.15 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++++|++|+|||||++-+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999988754
No 381
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.79 E-value=0.013 Score=54.31 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 382
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.79 E-value=0.013 Score=57.66 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+|..+.|+|++||||||+++.|..-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998755
No 383
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.79 E-value=0.019 Score=54.36 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988764
No 384
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.77 E-value=0.014 Score=54.67 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++++|++|+|||||++-+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999887753
No 385
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.75 E-value=0.014 Score=53.88 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++++|++|+|||||++-+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999988865
No 386
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.74 E-value=0.014 Score=54.47 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++++|++|+|||||++-+.+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998875
No 387
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.73 E-value=7.3 Score=44.13 Aligned_cols=10 Identities=10% Similarity=0.335 Sum_probs=6.4
Q ss_pred EEEeEEEEec
Q 005205 460 QFDNVHFSYL 469 (709)
Q Consensus 460 ~f~nVsF~Y~ 469 (709)
.++||||.-+
T Consensus 370 ~l~~isl~i~ 379 (598)
T 3qf4_B 370 VLKDITFHIK 379 (598)
T ss_dssp SCCSEEEECC
T ss_pred cccceEEEEc
Confidence 4667777664
No 388
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.72 E-value=0.02 Score=55.65 Aligned_cols=35 Identities=34% Similarity=0.440 Sum_probs=28.1
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl 508 (709)
..++..-+.+ .|..+.|+||||||||||+.-|..-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4566665554 5889999999999999999887654
No 389
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.72 E-value=0.015 Score=54.47 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++++|++|+|||||++.|.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999763
No 390
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.71 E-value=0.014 Score=55.75 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcC
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rl 508 (709)
--+++++|++|+|||||++.|.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999864
No 391
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.64 E-value=0.015 Score=55.32 Aligned_cols=24 Identities=46% Similarity=0.618 Sum_probs=21.2
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly 509 (709)
-+++++|++|+|||||++-+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999998753
No 392
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.60 E-value=0.028 Score=52.83 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=23.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc-----CCCCCCCE
Q 005205 487 SVAIVGTSGSGKSTILRLLFR-----SFDTHSGS 515 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r-----ly~p~~G~ 515 (709)
+++|+|++|+|||||++-+.+ -|+|+.|.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~ 41 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIEN 41 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccc
Confidence 689999999999999998872 34566553
No 393
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.57 E-value=0.013 Score=57.44 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+..++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998865
No 394
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.55 E-value=0.017 Score=54.55 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++++|++|+|||||++.|.+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999875
No 395
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.52 E-value=0.031 Score=52.56 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++|+|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998874
No 396
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.51 E-value=0.017 Score=54.64 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++|+|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999885
No 397
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.48 E-value=0.02 Score=53.54 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++++|++|+|||||++-+.+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999998875
No 398
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.48 E-value=0.017 Score=54.70 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999998874
No 399
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.47 E-value=0.017 Score=56.59 Aligned_cols=23 Identities=17% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
++.|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 400
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.47 E-value=0.049 Score=56.46 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 005205 613 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 655 (709)
Q Consensus 613 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRls 655 (709)
++.++++||+-. ++.+....+.+.+++...+..+|+++.+.+
T Consensus 110 ~~~vliiDe~~~-l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 110 SFKIIFLDEADA-LTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp SCEEEEEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCeEEEEeCCCc-CCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 688999999853 566777777777877545555666665543
No 401
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.47 E-value=0.025 Score=53.94 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=23.8
Q ss_pred cEEEEEcCCCccHHHHHHHHhc------CCCCCCC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFR------SFDTHSG 514 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~r------ly~p~~G 514 (709)
-+|+|+|++|+|||||++-+.+ -|.|+-|
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG 52 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence 4689999999999999999986 3455555
No 402
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.46 E-value=0.019 Score=58.94 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.7
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly 509 (709)
-+++|||++|+|||||++.|.|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 369999999999999999999853
No 403
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.45 E-value=0.018 Score=52.96 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++++|++|+|||||++-+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998864
No 404
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.43 E-value=0.025 Score=53.99 Aligned_cols=21 Identities=33% Similarity=0.648 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++|+|++|+|||||++.+.+
T Consensus 25 ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999998875
No 405
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.42 E-value=0.021 Score=59.53 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+..++|+||||||||||+.-|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 406
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.39 E-value=0.029 Score=53.48 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.1
Q ss_pred cEEEEEcCCCccHHHHHHHHhc
Q 005205 486 KSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~r 507 (709)
=+++|+|++|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3799999999999999999876
No 407
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.38 E-value=0.019 Score=53.75 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++++|++|+|||||++.+.+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 699999999999999998875
No 408
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.38 E-value=0.01 Score=57.69 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=23.1
Q ss_pred eeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC
Q 005205 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 476 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl 508 (709)
.|+.|.-.+--+++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 333333333347999999999999999998863
No 409
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.38 E-value=0.018 Score=53.75 Aligned_cols=21 Identities=14% Similarity=0.457 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++++|++|+|||||++-+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998874
No 410
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.38 E-value=0.023 Score=56.58 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.+..+.|+|++||||||+++.|..-|
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998755
No 411
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.34 E-value=0.035 Score=53.22 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+|+|+|++|+|||||++-+.+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998874
No 412
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.32 E-value=0.021 Score=56.50 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.+.|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998654
No 413
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.31 E-value=0.017 Score=61.04 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.1
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
..++|+||||||||||++.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999987654
No 414
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.30 E-value=0.021 Score=53.54 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++++|++|+|||||++-+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999988764
No 415
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.28 E-value=0.021 Score=53.29 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++++|++|+|||||++-+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998763
No 416
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.26 E-value=0.03 Score=54.51 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999864
No 417
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.25 E-value=0.021 Score=57.72 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.8
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rl 508 (709)
-+|+|||++|+|||||++.|++-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999874
No 418
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.24 E-value=0.021 Score=54.19 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++++|++|+|||||++-|.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999988753
No 419
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.23 E-value=0.022 Score=59.35 Aligned_cols=22 Identities=50% Similarity=0.599 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++|||++|+|||||++.|++-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999874
No 420
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.21 E-value=0.022 Score=53.56 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+|+++|++|+|||||++-+.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 699999999999999998875
No 421
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.19 E-value=0.026 Score=60.51 Aligned_cols=30 Identities=37% Similarity=0.540 Sum_probs=24.6
Q ss_pred eeeeeEeeCCcEEEEEcCCCccHHHHHHHHh
Q 005205 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (709)
Q Consensus 476 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~ 506 (709)
++..+++.+ ..+.|+|+||||||||+..|.
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 456666666 489999999999999998775
No 422
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.16 E-value=0.021 Score=56.89 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=22.2
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
..+|..+.|-|++||||||++++|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999987664
No 423
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.15 E-value=0.074 Score=58.15 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=25.7
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
-++|-.-+-+.||+|+|||+|++.+++-.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 46777889999999999999999999854
No 424
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.13 E-value=0.015 Score=56.90 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.-+|+|+|++|+|||||++.|++-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998753
No 425
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.12 E-value=0.032 Score=53.12 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++|+|++|+|||||++-+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999875
No 426
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.12 E-value=0.048 Score=57.50 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=28.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 005205 613 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 655 (709)
Q Consensus 613 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRls 655 (709)
+.+|+|+||+=. +..+....+.+.|++-..+...|++|++.+
T Consensus 108 ~~kvviIdead~-l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 108 GAKVVWVTDAAL-LTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SCEEEEESCGGG-BCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CcEEEEECchhh-cCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 578999999853 555555566677765444455677788764
No 427
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.09 E-value=0.024 Score=54.57 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999988764
No 428
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.09 E-value=0.024 Score=53.92 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++|+|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988753
No 429
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.07 E-value=0.022 Score=53.67 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++++|++|+|||||++-+.+
T Consensus 12 ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998875
No 430
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.06 E-value=0.027 Score=55.57 Aligned_cols=29 Identities=31% Similarity=0.370 Sum_probs=25.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~p 511 (709)
-+|..+.|-|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999876653
No 431
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.05 E-value=0.017 Score=54.42 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhc
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
+.-+++++|++|+|||||++-+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445899999999999999998863
No 432
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.04 E-value=0.038 Score=52.72 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999988763
No 433
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.03 E-value=0.024 Score=56.07 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=26.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~p 511 (709)
++|..+.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999887764
No 434
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.01 E-value=0.019 Score=58.27 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=24.7
Q ss_pred eeCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 482 I~~Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
.+++..++|.|+.||||||+++.|...+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35788999999999999999999988763
No 435
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.99 E-value=0.026 Score=53.65 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++++|++|+|||||++-+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998875
No 436
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.98 E-value=0.028 Score=54.04 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988763
No 437
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.94 E-value=0.029 Score=52.71 Aligned_cols=27 Identities=22% Similarity=0.430 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
..+..+.|+||+|+||||+++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999888764
No 438
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.94 E-value=0.026 Score=54.16 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++|||++|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999986
No 439
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.94 E-value=0.026 Score=55.01 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly 509 (709)
-+++++|++|+|||||++.|.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999888743
No 440
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.93 E-value=0.027 Score=54.00 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSFDT 511 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly~p 511 (709)
++++||.+|+|||||++.+.+-+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 6999999999999999998885543
No 441
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.92 E-value=0.013 Score=64.59 Aligned_cols=42 Identities=21% Similarity=0.454 Sum_probs=32.5
Q ss_pred cceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEE
Q 005205 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516 (709)
Q Consensus 474 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I 516 (709)
+++.+ +.+-+|++++|+|+||+|||||++.|.+-.....|.|
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 45555 6788999999999999999999998877544333433
No 442
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.92 E-value=0.029 Score=56.23 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
+|..++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987664
No 443
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.92 E-value=0.027 Score=58.76 Aligned_cols=22 Identities=50% Similarity=0.650 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+|||||++|+|||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999884
No 444
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.92 E-value=0.027 Score=53.88 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++|+|++|+|||||++-|.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999976
No 445
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.91 E-value=0.028 Score=55.52 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.7
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rl 508 (709)
-+|+|+|++|+|||||++.+++-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999863
No 446
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.88 E-value=0.028 Score=52.86 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++++|++|+|||||++-+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999988864
No 447
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.86 E-value=0.026 Score=54.39 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.6
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rl 508 (709)
=+++|+|++|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 47999999999999999998864
No 448
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.86 E-value=0.031 Score=55.54 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
++|..+.+.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999987654
No 449
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.83 E-value=0.036 Score=52.67 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++|+|++|+|||||++.|.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999988863
No 450
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.82 E-value=0.033 Score=52.18 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhc
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
+-=+++++|++|+|||||++.+.+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999998875
No 451
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.81 E-value=0.21 Score=54.39 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=25.2
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
-+++..-+-+.||+|+|||+|++.+++-.
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46677779999999999999999999753
No 452
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.80 E-value=0.033 Score=54.95 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
+|..+.+.|++||||||++++|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
No 453
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.78 E-value=0.027 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++|+|++|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 6899999999999999988763
No 454
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.77 E-value=0.027 Score=55.78 Aligned_cols=74 Identities=19% Similarity=0.250 Sum_probs=44.4
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHhhcceEEEcCCCCCCchhHHHHHHcCCCC
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS 559 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~~~~-~~lR~~i~~V~Q~~~LF~gTIreNI~~g~~~ 559 (709)
..++...+.|+||.||||+|.++.|+.-|. -..| +. +-+|+.+. .+.. ..-.+++-+.-|. -
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g----~~hI--------stGdllR~~i~---~~t~-lg~~~~~~~~~G~-l 87 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH----FNHL--------SSGDLLRAEVQ---SGSP-KGKELKAMMERGE-L 87 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHC----CEEE--------CHHHHHHHHHT---TCCH-HHHHHHHHHHHTC-C
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHC----CceE--------cHHHHHHHHHH---cCCc-hHHHHHHHHhcCC-C
Confidence 456677899999999999999999987662 2222 22 23444331 1111 2234555556665 3
Q ss_pred CCHHHHHHHHHH
Q 005205 560 ATEEEVYDAARR 571 (709)
Q Consensus 560 ~s~~ei~~A~~~ 571 (709)
.+|+-+.+..+.
T Consensus 88 Vpde~~~~lv~~ 99 (217)
T 3umf_A 88 VPLEVVLALLKE 99 (217)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 566666665543
No 455
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.76 E-value=0.03 Score=53.39 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++|+|++|+|||||++-+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999988753
No 456
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.76 E-value=0.014 Score=62.45 Aligned_cols=50 Identities=32% Similarity=0.466 Sum_probs=37.4
Q ss_pred EEEEeEEEEecCCcccce-----------eeeeEeeCCcEEEEEcCCCccHHHHHHHHhcC
Q 005205 459 IQFDNVHFSYLTERKILD-----------GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~-----------~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+.|++++--||.++.-++ |.=+.|-+||+.+|+|++|+|||||++-|.+.
T Consensus 138 ~~fe~l~Pi~P~~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 138 VNFDNLTPDYPRERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp CCGGGSCEECCCSBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred cccccCCCCCchhhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHH
Confidence 445555555554333444 45578999999999999999999999988874
No 457
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.74 E-value=0.031 Score=55.85 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
+|..++|.|..||||||+++.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998663
No 458
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.71 E-value=0.031 Score=53.87 Aligned_cols=21 Identities=29% Similarity=0.686 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++|+|++|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999999875
No 459
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.71 E-value=0.03 Score=57.82 Aligned_cols=31 Identities=35% Similarity=0.473 Sum_probs=24.2
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCCCEEEEC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~id 519 (709)
..+.|+|++||||||+++.|..-+ .|-..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~---~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC---CCcEEec
Confidence 468999999999999999998632 2555553
No 460
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.71 E-value=0.03 Score=57.34 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+++++|.+|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999854
No 461
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.70 E-value=0.042 Score=52.17 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=26.1
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhc
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
..+|..-+. -.|.-+.|.|+||+||||++..|..
T Consensus 5 ~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 345554444 4588999999999999999987764
No 462
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.68 E-value=0.032 Score=52.90 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhc
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
+.=+++++|++|+|||||++-+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344799999999999999999884
No 463
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.66 E-value=0.03 Score=58.71 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=22.2
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
..+.|+||||||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998653
No 464
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.64 E-value=0.035 Score=56.53 Aligned_cols=30 Identities=37% Similarity=0.464 Sum_probs=23.1
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCCCE
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly~p~~G~ 515 (709)
.++++||.+|+|||||++.|.+-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876555454
No 465
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.62 E-value=0.027 Score=53.63 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rl 508 (709)
=+++++|++|+|||||++-+.+-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999998764
No 466
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.61 E-value=0.029 Score=52.97 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++++|++|+|||||++-+.+
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 467
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.61 E-value=0.033 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rl 508 (709)
=+++++|++|+|||||++-+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999988753
No 468
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.61 E-value=0.03 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rl 508 (709)
-.++|+|++|+|||||++-|++-
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999888764
No 469
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.60 E-value=0.033 Score=52.85 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++|+|++|+|||||++-|.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999988753
No 470
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.60 E-value=0.033 Score=53.86 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.0
Q ss_pred cEEEEEcCCCccHHHHHHHHhc
Q 005205 486 KSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~r 507 (709)
=+|+|+|++|+|||||++.+.+
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998874
No 471
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.59 E-value=0.069 Score=63.72 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=26.7
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCCC-EEEECC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSG-SIRIDG 520 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rly~p~~G-~I~idG 520 (709)
..+.|+||+|+|||++++.|........+ -|.+|.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 47899999999999999999987654333 344543
No 472
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.59 E-value=0.032 Score=56.86 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+++++|++|+|||||++.|++-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998743
No 473
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.59 E-value=0.033 Score=56.56 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++++|++|+|||||++.|++-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999973
No 474
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.56 E-value=0.034 Score=53.45 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcC
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rl 508 (709)
.=+++|+|++|+|||||++-+.+-
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 347999999999999999988753
No 475
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.55 E-value=0.036 Score=56.27 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+++++|.+|+|||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999843
No 476
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.55 E-value=0.037 Score=57.58 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
...+.|+||||||||||+.-|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 477
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.53 E-value=0.028 Score=52.60 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=19.7
Q ss_pred cEEEEEcCCCccHHHHHHHHhc
Q 005205 486 KSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~r 507 (709)
=+++++|++|+|||||++-+.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999998875
No 478
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.52 E-value=0.035 Score=54.16 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999885
No 479
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.51 E-value=0.038 Score=53.75 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+|+|+|++|+|||||++.|.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999988863
No 480
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.46 E-value=0.039 Score=52.89 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHhc
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
.=+++++|++|+|||||++-+.+
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999998875
No 481
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.45 E-value=0.029 Score=57.93 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.+.|.||+|+||||+++.+.+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 49999999999999999998754
No 482
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.41 E-value=0.035 Score=57.66 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
.++|||++|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 483
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.40 E-value=0.038 Score=52.60 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++|+|++|+|||||++-+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 699999999999999977754
No 484
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.34 E-value=0.027 Score=53.06 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=9.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++|+|++|+|||||++-+.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999988764
No 485
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.30 E-value=0.036 Score=53.36 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++++|++|+|||||++.+.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999876
No 486
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.30 E-value=0.051 Score=52.71 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rl 508 (709)
-+++++|++|+|||||++-+.+-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999988753
No 487
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.29 E-value=0.26 Score=53.85 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 484 AGKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 484 ~Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
+...++++|++|+||||++.-|+..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999988876554
No 488
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.26 E-value=0.042 Score=57.28 Aligned_cols=27 Identities=37% Similarity=0.834 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+++-+++++|++|+|||||++.+.+-+
T Consensus 1 ~~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 1 PLGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 345689999999999999999887653
No 489
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.24 E-value=0.037 Score=51.98 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 483 ~~Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
+.+..+.|+||+|+||||+++.+.....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4467789999999999999999887654
No 490
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.23 E-value=0.037 Score=56.91 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+|+|||.+|+|||||++.|.|--
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 79999999999999999998854
No 491
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.23 E-value=0.038 Score=52.88 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=24.8
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCccHHHHHHHHhc
Q 005205 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 473 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
++++.+. -++.=+++++|++|+|||||++-+.+
T Consensus 19 ~~~~~~~--~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 19 SLFSRIF--GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CGGGGTT--TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred HHHHHhc--cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 4555431 24455799999999999999998864
No 492
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.18 E-value=0.055 Score=52.85 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.1
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rl 508 (709)
=+++|||++|+|||||++-+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 37999999999999999988753
No 493
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.16 E-value=0.054 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rly 509 (709)
+|+|||.+|+|||||++-+.+..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 69999999999999999998643
No 494
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.15 E-value=0.025 Score=55.07 Aligned_cols=21 Identities=24% Similarity=0.631 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 005205 487 SVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~r 507 (709)
+++|+|++|+|||||++.|++
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998874
No 495
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.08 E-value=0.1 Score=56.29 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=24.6
Q ss_pred EeeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 005205 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (709)
Q Consensus 481 ~I~~Ge~vaIVG~SGsGKSTL~~LL~rly 509 (709)
-++|-.-+-+.||+|+|||+|++.+++-.
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 45666669999999999999999999853
No 496
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.06 E-value=0.044 Score=59.15 Aligned_cols=26 Identities=38% Similarity=0.588 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCC
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFRSFD 510 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~rly~ 510 (709)
...++|+||||||||||+.-|+.-++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 35789999999999999998876553
No 497
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.04 E-value=0.043 Score=52.26 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 005205 487 SVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 487 ~vaIVG~SGsGKSTL~~LL~rl 508 (709)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999988753
No 498
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.04 E-value=0.16 Score=56.10 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=55.8
Q ss_pred ccccCCCCCCChHHHHHHHH------HHHhcc-----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 005205 587 TVVGERGLKLSGGEKQRVAL------ARAFLK-----------APPILLCDEATSALDSTTEAEILNALKSLANNRTSIF 649 (709)
Q Consensus 587 T~vGe~G~~LSGGQrQRiaI------ARAll~-----------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIv 649 (709)
+........+||||+|-.-+ |.+.-. .=.+++|||| |-+|.+.-+..++-++++ |-=+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 44444566789999994322 222211 1147999999 999999999999999975 667777
Q ss_pred EecCchHHhhcCeEEEEe
Q 005205 650 IAHRLTTAMQCDEIIVLE 667 (709)
Q Consensus 650 IaHRlsti~~aD~Iivl~ 667 (709)
+|=. .....+|.++.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 7777 5556789998875
No 499
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.97 E-value=0.039 Score=53.36 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHhc
Q 005205 485 GKSVAIVGTSGSGKSTILRLLFR 507 (709)
Q Consensus 485 Ge~vaIVG~SGsGKSTL~~LL~r 507 (709)
.=+++++|++|+|||||++-+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 44799999999999999977763
No 500
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.88 E-value=0.045 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=19.9
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 005205 486 KSVAIVGTSGSGKSTILRLLFRS 508 (709)
Q Consensus 486 e~vaIVG~SGsGKSTL~~LL~rl 508 (709)
-+++|+|.+|+|||||++-+++-
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999877654
Done!