Query 005207
Match_columns 709
No_of_seqs 591 out of 4102
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 19:48:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 8.8E-51 1.9E-55 489.9 43.0 536 2-679 517-1100(1153)
2 PLN00113 leucine-rich repeat r 100.0 3.4E-40 7.4E-45 398.1 30.7 464 17-485 69-588 (968)
3 PLN00113 leucine-rich repeat r 100.0 5.2E-40 1.1E-44 396.5 29.7 447 15-465 91-589 (968)
4 KOG4194 Membrane glycoprotein 100.0 7.6E-32 1.7E-36 278.1 5.2 384 45-455 52-447 (873)
5 KOG4194 Membrane glycoprotein 100.0 8.9E-31 1.9E-35 270.3 5.5 367 47-444 80-465 (873)
6 KOG0444 Cytoskeletal regulator 100.0 4.6E-32 1E-36 281.1 -4.0 362 46-465 8-380 (1255)
7 KOG0472 Leucine-rich repeat pr 100.0 5.4E-32 1.2E-36 268.1 -8.6 248 39-293 39-308 (565)
8 KOG0444 Cytoskeletal regulator 100.0 5.5E-31 1.2E-35 273.1 -4.8 363 68-488 9-382 (1255)
9 KOG0472 Leucine-rich repeat pr 99.9 5.7E-30 1.2E-34 253.7 -11.9 407 12-459 63-540 (565)
10 KOG0618 Serine/threonine phosp 99.9 8.9E-28 1.9E-32 261.0 -6.3 389 37-455 37-508 (1081)
11 KOG0618 Serine/threonine phosp 99.9 3.4E-27 7.3E-32 256.6 -5.8 419 39-475 16-459 (1081)
12 PLN03210 Resistant to P. syrin 99.9 7.4E-23 1.6E-27 247.9 25.7 339 15-410 556-904 (1153)
13 PRK15387 E3 ubiquitin-protein 99.8 9.9E-18 2.2E-22 189.2 17.4 257 67-366 202-458 (788)
14 PRK15387 E3 ubiquitin-protein 99.8 1.9E-17 4.2E-22 186.9 18.9 259 45-344 201-459 (788)
15 PRK15370 E3 ubiquitin-protein 99.7 7.9E-18 1.7E-22 191.3 12.3 245 46-318 179-427 (754)
16 PRK15370 E3 ubiquitin-protein 99.7 1.1E-17 2.5E-22 190.0 12.8 245 66-364 178-426 (754)
17 KOG4237 Extracellular matrix p 99.7 9.8E-20 2.1E-24 181.3 -5.5 249 90-343 69-359 (498)
18 KOG4237 Extracellular matrix p 99.7 2E-18 4.2E-23 172.1 -2.9 262 50-317 51-357 (498)
19 cd00116 LRR_RI Leucine-rich re 99.6 8.2E-17 1.8E-21 169.6 0.7 260 182-458 17-318 (319)
20 KOG0617 Ras suppressor protein 99.5 1.4E-16 3E-21 141.3 -4.1 149 67-246 34-184 (264)
21 cd00116 LRR_RI Leucine-rich re 99.5 6.8E-16 1.5E-20 162.6 -1.3 272 71-364 3-318 (319)
22 KOG0617 Ras suppressor protein 99.5 1.1E-15 2.3E-20 135.7 -4.2 158 41-231 29-192 (264)
23 KOG4658 Apoptotic ATPase [Sign 99.3 1.5E-12 3.3E-17 150.7 8.0 201 163-365 570-782 (889)
24 KOG4658 Apoptotic ATPase [Sign 99.1 3.9E-11 8.4E-16 139.2 5.6 147 17-174 523-678 (889)
25 KOG3207 Beta-tubulin folding c 99.1 1.4E-11 3.1E-16 125.3 1.1 206 232-458 118-337 (505)
26 COG4886 Leucine-rich repeat (L 99.0 3.5E-10 7.6E-15 122.8 7.7 181 86-300 114-295 (394)
27 KOG3207 Beta-tubulin folding c 99.0 6.6E-11 1.4E-15 120.5 0.5 190 232-437 143-339 (505)
28 KOG1909 Ran GTPase-activating 99.0 4.5E-11 9.7E-16 118.7 -2.4 240 39-294 24-310 (382)
29 KOG1259 Nischarin, modulator o 98.9 1.6E-10 3.6E-15 111.9 0.6 131 259-439 284-414 (490)
30 COG4886 Leucine-rich repeat (L 98.9 1.3E-09 2.7E-14 118.5 7.4 197 49-255 97-297 (394)
31 PF14580 LRR_9: Leucine-rich r 98.9 4.7E-10 1E-14 104.8 2.7 77 67-144 20-98 (175)
32 PF14580 LRR_9: Leucine-rich r 98.9 1.7E-09 3.6E-14 101.1 5.6 122 73-202 4-127 (175)
33 KOG0532 Leucine-rich repeat (L 98.9 6.2E-11 1.3E-15 124.3 -4.4 187 72-293 56-245 (722)
34 KOG1909 Ran GTPase-activating 98.8 2.7E-10 5.8E-15 113.2 -3.0 248 107-365 26-310 (382)
35 KOG1259 Nischarin, modulator o 98.8 1.1E-09 2.4E-14 106.3 -0.3 199 230-458 209-410 (490)
36 KOG0532 Leucine-rich repeat (L 98.8 1.9E-10 4.2E-15 120.7 -6.5 190 238-457 78-270 (722)
37 KOG0531 Protein phosphatase 1, 98.6 4.9E-09 1.1E-13 114.1 -1.2 196 87-294 71-267 (414)
38 KOG4341 F-box protein containi 98.5 2.6E-09 5.6E-14 108.6 -6.6 158 208-365 213-384 (483)
39 KOG0531 Protein phosphatase 1, 98.5 2.8E-08 6.1E-13 108.2 0.2 213 67-294 73-289 (414)
40 PRK15386 type III secretion pr 98.5 7.2E-07 1.6E-11 93.5 10.3 62 257-323 50-111 (426)
41 PLN03150 hypothetical protein; 98.4 5.9E-07 1.3E-11 102.5 8.6 108 236-343 419-528 (623)
42 KOG2982 Uncharacterized conser 98.4 1.2E-07 2.5E-12 92.5 1.6 232 234-487 44-287 (418)
43 KOG2120 SCF ubiquitin ligase, 98.4 3.8E-09 8.3E-14 102.6 -9.0 105 260-364 186-297 (419)
44 PLN03150 hypothetical protein; 98.4 8.7E-07 1.9E-11 101.1 8.4 109 189-297 419-530 (623)
45 PRK15386 type III secretion pr 98.3 1.3E-06 2.8E-11 91.6 8.5 159 302-505 48-214 (426)
46 KOG2120 SCF ubiquitin ligase, 98.3 1.5E-08 3.3E-13 98.5 -6.0 177 188-409 185-373 (419)
47 PF13855 LRR_8: Leucine rich r 98.3 7.5E-07 1.6E-11 68.2 3.8 56 89-144 2-59 (61)
48 KOG4341 F-box protein containi 98.3 3E-08 6.6E-13 101.0 -5.5 236 185-461 161-415 (483)
49 PF13855 LRR_8: Leucine rich r 98.2 2E-06 4.2E-11 65.9 3.7 57 260-316 2-59 (61)
50 KOG1859 Leucine-rich repeat pr 98.1 1.3E-08 2.8E-13 109.8 -11.6 100 260-363 165-264 (1096)
51 KOG2982 Uncharacterized conser 98.1 7.2E-07 1.6E-11 87.1 0.9 78 67-144 46-131 (418)
52 KOG1859 Leucine-rich repeat pr 98.0 1.4E-07 3.1E-12 102.0 -7.4 124 67-201 165-292 (1096)
53 KOG1644 U2-associated snRNP A' 97.9 2.4E-05 5.2E-10 72.7 5.8 107 86-198 40-150 (233)
54 COG5238 RNA1 Ran GTPase-activa 97.8 3.3E-06 7.1E-11 81.5 -0.2 192 40-248 25-255 (388)
55 PF12799 LRR_4: Leucine Rich r 97.7 2.6E-05 5.7E-10 54.8 2.9 39 425-464 2-40 (44)
56 KOG3665 ZYG-1-like serine/thre 97.7 1.7E-05 3.8E-10 90.3 2.3 133 134-272 122-263 (699)
57 PF12799 LRR_4: Leucine Rich r 97.5 6.2E-05 1.3E-09 52.9 2.6 35 89-123 2-36 (44)
58 KOG1644 U2-associated snRNP A' 97.5 0.00022 4.8E-09 66.4 6.0 125 48-175 22-151 (233)
59 COG5238 RNA1 Ran GTPase-activa 97.3 9.1E-05 2E-09 71.8 1.8 108 257-364 155-283 (388)
60 KOG4579 Leucine-rich repeat (L 97.3 8E-06 1.7E-10 70.9 -5.2 77 67-143 54-132 (177)
61 KOG3665 ZYG-1-like serine/thre 97.3 0.00013 2.8E-09 83.4 2.7 131 212-343 123-263 (699)
62 KOG4579 Leucine-rich repeat (L 97.2 2.5E-05 5.5E-10 67.9 -2.8 103 67-176 28-135 (177)
63 KOG1947 Leucine rich repeat pr 97.0 0.0001 2.2E-09 82.2 -1.9 110 210-319 187-308 (482)
64 KOG2739 Leucine-rich acidic nu 96.6 0.00069 1.5E-08 65.9 1.2 79 67-145 44-127 (260)
65 KOG2739 Leucine-rich acidic nu 96.6 0.00098 2.1E-08 64.9 2.2 87 86-178 41-130 (260)
66 KOG1947 Leucine rich repeat pr 96.5 0.00023 4.9E-09 79.5 -3.6 85 233-317 186-280 (482)
67 KOG2123 Uncharacterized conser 96.2 0.00024 5.2E-09 69.2 -5.0 97 43-140 17-123 (388)
68 KOG2123 Uncharacterized conser 95.6 0.00031 6.6E-09 68.5 -7.0 99 89-194 20-123 (388)
69 PF13306 LRR_5: Leucine rich r 95.4 0.055 1.2E-06 48.1 7.4 105 35-143 2-112 (129)
70 PF13306 LRR_5: Leucine rich r 95.2 0.091 2E-06 46.6 8.1 114 15-136 10-128 (129)
71 PF00560 LRR_1: Leucine Rich R 94.5 0.016 3.4E-07 33.8 0.8 20 425-444 1-20 (22)
72 PF00560 LRR_1: Leucine Rich R 94.2 0.023 4.9E-07 33.2 1.0 21 89-109 1-21 (22)
73 PF13504 LRR_7: Leucine rich r 93.2 0.058 1.3E-06 29.2 1.4 15 425-439 2-16 (17)
74 PF13504 LRR_7: Leucine rich r 90.6 0.16 3.5E-06 27.5 1.3 16 67-82 2-17 (17)
75 PF07725 LRR_3: Leucine Rich R 89.2 0.26 5.7E-06 27.8 1.4 19 89-107 1-19 (20)
76 smart00370 LRR Leucine-rich re 88.5 0.42 9.1E-06 29.0 2.2 21 423-443 1-21 (26)
77 smart00369 LRR_TYP Leucine-ric 88.5 0.42 9.1E-06 29.0 2.2 21 423-443 1-21 (26)
78 KOG0473 Leucine-rich repeat pr 88.3 0.017 3.8E-07 55.2 -6.0 85 37-122 34-122 (326)
79 KOG4308 LRR-containing protein 86.3 0.0063 1.4E-07 66.7 -11.9 86 258-343 203-303 (478)
80 KOG4308 LRR-containing protein 86.3 0.0069 1.5E-07 66.4 -11.6 38 164-201 144-185 (478)
81 KOG3864 Uncharacterized conser 85.5 0.15 3.2E-06 48.1 -1.5 34 424-457 151-186 (221)
82 KOG3864 Uncharacterized conser 84.5 0.34 7.3E-06 45.8 0.4 78 425-502 102-187 (221)
83 smart00370 LRR Leucine-rich re 82.8 0.84 1.8E-05 27.6 1.5 22 329-350 1-22 (26)
84 smart00369 LRR_TYP Leucine-ric 82.8 0.84 1.8E-05 27.6 1.5 22 329-350 1-22 (26)
85 KOG0473 Leucine-rich repeat pr 81.4 0.064 1.4E-06 51.4 -5.7 79 66-144 42-121 (326)
86 smart00364 LRR_BAC Leucine-ric 75.7 1.8 3.9E-05 26.3 1.3 18 66-83 2-19 (26)
87 smart00364 LRR_BAC Leucine-ric 74.9 2 4.3E-05 26.1 1.3 18 424-441 2-19 (26)
88 smart00367 LRR_CC Leucine-rich 66.8 3.8 8.3E-05 24.7 1.4 15 447-461 2-16 (26)
89 smart00365 LRR_SD22 Leucine-ri 64.0 4.8 0.0001 24.5 1.4 16 88-103 2-17 (26)
90 PF13516 LRR_6: Leucine Rich r 58.5 5.8 0.00013 23.3 1.1 14 424-437 2-15 (24)
91 smart00368 LRR_RI Leucine rich 39.4 24 0.00053 21.7 1.8 14 424-437 2-15 (28)
92 KOG3763 mRNA export factor TAP 35.0 14 0.0003 40.7 0.2 20 561-580 440-459 (585)
93 KOG3763 mRNA export factor TAP 34.8 18 0.00039 39.8 1.0 82 397-479 216-312 (585)
94 PF05725 FNIP: FNIP Repeat; I 24.9 1.2E+02 0.0026 20.9 3.6 33 64-96 10-42 (44)
95 KOG4242 Predicted myosin-I-bin 22.3 6.9E+02 0.015 27.5 9.9 272 134-425 165-494 (553)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.8e-51 Score=489.94 Aligned_cols=536 Identities=28% Similarity=0.420 Sum_probs=340.0
Q ss_pred CccchhHHhhhccCCcceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCc----------cccCcccccCcCccEE
Q 005207 2 EARRSAPCVEKKYGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNV----------QLLEGLEYLSNKLRLL 71 (709)
Q Consensus 2 ~~~~i~~vl~~~~g~~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~----------~l~~~~~~l~~~L~~L 71 (709)
+++||++|+++++|+++|++|.+|.+ .. ++..+..++|.+|++|+.|.+..+ ++++++..+|.+||.|
T Consensus 517 ~~~di~~vl~~~~g~~~v~~i~l~~~-~~-~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L 594 (1153)
T PLN03210 517 DAKDICDVLEDNTGTKKVLGITLDID-EI-DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLL 594 (1153)
T ss_pred CHHHHHHHHHhCcccceeeEEEeccC-cc-ceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEE
Confidence 57899999999999999999999999 87 588999999999999999999654 3567888889999999
Q ss_pred EeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccC
Q 005207 72 DWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVH 151 (709)
Q Consensus 72 ~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 151 (709)
+|.+|+++.+|..+.+.+|++|+|++|+++.+|.++..+++|+.|+|+++.....+|+++.+++|++|+|++|..+..+|
T Consensus 595 ~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp 674 (1153)
T PLN03210 595 RWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELP 674 (1153)
T ss_pred EecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999888888889999999999999987666666
Q ss_pred cccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccc
Q 005207 152 PSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAI 231 (709)
Q Consensus 152 ~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l 231 (709)
.++.. +++|+.|++++|..++.+|..+
T Consensus 675 ~si~~-----------------------------------------------------L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 675 SSIQY-----------------------------------------------------LNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred hhhhc-----------------------------------------------------cCCCCEEeCCCCCCcCccCCcC
Confidence 54333 3333334444444444444433
Q ss_pred cCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCcc-------ccccccC
Q 005207 232 SSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFAR-------VPSSING 304 (709)
Q Consensus 232 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~-------l~~~~~~ 304 (709)
++++|+.|++++|.....+|.. ..+|++|++++|.+..+|..+ .+++|+.|.+.++..... .+.....
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred -CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhc
Confidence 3555555555555544444432 245666666666666666544 456666666655432110 0111112
Q ss_pred CCCCCEEEeeCcCCCccCCccccCCCccceeecccc-ccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccC
Q 005207 305 LKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET-AVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 383 (709)
Q Consensus 305 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n-~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 383 (709)
.++|+.|++++|.....+|..++++++|+.|++++| .+..+|..+ .+++|++|++++|..+
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L----------------- 838 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL----------------- 838 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc-----------------
Confidence 345555555555555555555555555555555544 233444333 3455555555555422
Q ss_pred ccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccccccC
Q 005207 384 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFL 463 (709)
Q Consensus 384 ~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~l 463 (709)
..+|.. .++|+.|+|++|.++.+|.++..+++|+.|+|++|+.++.+
T Consensus 839 ------------------------------~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 839 ------------------------------RTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred ------------------------------cccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCcc
Confidence 112211 23455555555555555555555555555555555555554
Q ss_pred CCCC---CCccEEEecCCCCcceecCcc--------------ccccccCcccccccchhcccchhHHHHHHHHHHhhccC
Q 005207 464 PQLP---PNIIFVKVNGCSSLVTLLGAL--------------KLCKSNGIVIECIDSLKLLRNNGWAILMLREYLEAVSD 526 (709)
Q Consensus 464 p~lp---~sL~~L~i~~C~~L~~l~~~~--------------~~~~l~~l~~~~c~~L~~~~~~~~~~~~l~~~~~~~~~ 526 (709)
|..+ ++|+.+++.+|++|+.+.... .......+.|.+|.+|+.... ++ ..
T Consensus 886 ~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~-------l~----~~-- 952 (1153)
T PLN03210 886 SLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL-------LQ----QQ-- 952 (1153)
T ss_pred CcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh-------hc----cc--
Confidence 4322 234444555555554432111 011223467889988763211 11 01
Q ss_pred CCCceeEeccCCCCCccccccCCCceEE-EEcCCCCcCCCceEEEEEEEEEecCCcccccccccccceeeEEEcCCCCCe
Q 005207 527 PLKDFSTVIPGSKIPKWFMYQNEGSSIT-VTRPSYLYNMNKIVGYAICCVFHVPRHSTRIKKRRHSYELQCCMDGSDRGF 605 (709)
Q Consensus 527 ~~~~~~~~~pg~~iP~wf~~~~~g~si~-~~lp~~~~~~~~~~gf~~c~v~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 605 (709)
.....+++||.++|+||.||+.|++++ |.+|+.|... .|.||++|+|+....... ......+.+.|.+.+..+..
T Consensus 953 -~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~-~~~~f~~c~v~~~~~~~~--~~~~~~~~~~c~~~~~~~~~ 1028 (1153)
T PLN03210 953 -SIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQ-PFFRFRACAVVDSESFFI--ISVSFDIQVCCRFIDRLGNH 1028 (1153)
T ss_pred -ccceEEECCCccCchhccCCcccceeeeeccCCcccCC-CccceEEEEEEecCcccc--CCCceeEEEEEEEECCCCCc
Confidence 111357899999999999999999998 9999999876 799999999997754221 11123456788877665543
Q ss_pred eEeecccccCCCCCeEEEEEecccc---------c-cCc--ccccccceEEEEEecccccccccCCCCCceEEeeeeEEE
Q 005207 606 FITFGGKFSHSGSDHLWLLFLSPRE---------C-YDR--RWIFESNHFKLSFNDAREKYDMAGSGTGLKVKRCGFHPV 673 (709)
Q Consensus 606 ~~~~~~~~~~~~~~h~~~~~~~~~~---------~-~~~--~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vk~cG~~li 673 (709)
+. ....+|+|+.|..... . .+. .....++|+.+.|.+. .....++||+|||+++
T Consensus 1029 ~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-------~~~~~~~~~~cg~~~~ 1094 (1153)
T PLN03210 1029 FD-------SPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLT-------NKNSQLKLKGCGIRLS 1094 (1153)
T ss_pred cc-------cCCCceeEeeeccccceEEecccccccccccchhccCCceeeEEEEEe-------cCCCCeEEEeeeEEEe
Confidence 32 2344555555542111 0 000 1112367777777311 1122369999999999
Q ss_pred eecccc
Q 005207 674 YMHEVE 679 (709)
Q Consensus 674 y~~~~~ 679 (709)
|.++..
T Consensus 1095 ~~~~~~ 1100 (1153)
T PLN03210 1095 EDDSSL 1100 (1153)
T ss_pred ccCCCc
Confidence 965544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.4e-40 Score=398.06 Aligned_cols=464 Identities=21% Similarity=0.244 Sum_probs=264.3
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccCcc----cccCcCccEEEeeCCCCCCCCCcCCcCCceE
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGL----EYLSNKLRLLDWHRYPLKSLPSNLQLDKIVE 92 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~~~----~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~ 92 (709)
.+|+.+.+..+ .. ... .+.+|.++++|+.|++++|++.+.+ ..-..+||+|++++|.+....+...+++|++
T Consensus 69 ~~v~~L~L~~~-~i--~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGK-NI--SGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLET 144 (968)
T ss_pred CcEEEEEecCC-Cc--ccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCE
Confidence 45677766665 33 222 3578999999999999998876432 2123689999999888764333346778888
Q ss_pred EEcccCCcc-ccccccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCccccccccccc--------
Q 005207 93 FKMCYSRIE-ELWKGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF-------- 162 (709)
Q Consensus 93 L~Ls~n~i~-~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~-------- 162 (709)
|+|++|.+. .+|..+..+++|++|+|++|.+....| .+.++++|++|++++|.....+|..++.+.+|+.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 888888887 567778888888888888887765554 4778888888888887655556655554322211
Q ss_pred ----------CCCccEEEccCCCCCCcCCccccCCCccceeeccCCCcc-ccCcccccCCCCcEEecCCCCCCCcCcccc
Q 005207 163 ----------VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAI 231 (709)
Q Consensus 163 ----------l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l 231 (709)
+++|++|++++|.+.+.+|..++++++|+.|++++|.+. .+|..+..+++|+.|++++|.....+|..+
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH
Confidence 234444444444444444444444555555555544443 344444445555555555544444444444
Q ss_pred cCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCc-ccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCE
Q 005207 232 SSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKT 310 (709)
Q Consensus 232 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~ 310 (709)
.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+.+..|..+..+++|+.
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~ 384 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence 45555555555555554445555555555555555555554 34444555555555555555554444444444444444
Q ss_pred EEeeCcCCCccCCccccCCCccceeeccccccc-cCCcccccccCCcEEEccCCCCCCCCCccc--cc------------
Q 005207 311 LNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNGPPSSASWH--LH------------ 375 (709)
Q Consensus 311 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~--~~------------ 375 (709)
|++++|...+.+|..++.+++|+.|++++|.++ .+|..+..+++|+.|++++|......+... +.
T Consensus 385 L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred EECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence 444444444445555555556666666666555 344455555555555555554332211100 00
Q ss_pred ----------cccccccCccccccccCCC-CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc-ccChhh
Q 005207 376 ----------LPFNLMGKSSCLVALMLPS-LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASI 443 (709)
Q Consensus 376 ----------~~~~~~~~~~~~~~~~lp~-l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~i 443 (709)
..........+......|. +..+++|+.|+|++|++. +.+|..+..+++|++|+|++|+++ .+|..+
T Consensus 465 ~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 543 (968)
T PLN00113 465 FGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS-GEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543 (968)
T ss_pred eeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce-eeCChHHcCccCCCEEECCCCcccccCChhH
Confidence 0000011111111112222 555666666666666664 556666666777777777777766 556666
Q ss_pred hcCCCcCeeccccccccccCCCC---CCCccEEEecCCCCcceec
Q 005207 444 NSLLNLKELEMEDCKRLQFLPQL---PPNIIFVKVNGCSSLVTLL 485 (709)
Q Consensus 444 ~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~C~~L~~l~ 485 (709)
..+++|+.|++++|+....+|.. .++|+.|++++|+-...++
T Consensus 544 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 67777777777777665555542 2456777777776555554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.2e-40 Score=396.51 Aligned_cols=447 Identities=19% Similarity=0.233 Sum_probs=309.1
Q ss_pred CCcceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccCccc-ccCcCccEEEeeCCCCC-CCCCcC-CcCCce
Q 005207 15 GSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGLE-YLSNKLRLLDWHRYPLK-SLPSNL-QLDKIV 91 (709)
Q Consensus 15 g~~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~~~~-~l~~~L~~L~l~~~~l~-~lp~~~-~l~~L~ 91 (709)
+...++.+.+..+ +. ...++...|.++++||.|++++|.+.+.+. ....+|++|++++|.+. .+|..+ .+.+|+
T Consensus 91 ~l~~L~~L~Ls~n-~~--~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 91 RLPYIQTINLSNN-QL--SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred CCCCCCEEECCCC-cc--CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 3456777777766 43 346777788899999999999988765332 12257888888888775 456555 677888
Q ss_pred EEEcccCCcc-ccccccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCccccccccccc-------
Q 005207 92 EFKMCYSRIE-ELWKGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF------- 162 (709)
Q Consensus 92 ~L~Ls~n~i~-~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~------- 162 (709)
+|+|++|.+. .+|..+.++++|++|+|++|.+....| .+.++++|++|++++|.....+|..++.+.+|+.
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 8888887765 566677777777777777777655444 4666777777777766544455555554444332
Q ss_pred -----------CCCccEEEccCCCCCCcCCccccCCCccceeeccCCCcc-ccCcccccCCCCcEEecCCCCCCCcCccc
Q 005207 163 -----------VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVA 230 (709)
Q Consensus 163 -----------l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~ 230 (709)
+++|++|++++|.+.+.+|..+.++++|++|++++|.+. .+|..+.++++|+.|++++|...+.+|..
T Consensus 248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 367888888888888888888888888888888888876 67777888888888888888777777777
Q ss_pred ccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCc-ccCcccCCCCCCCEEeccCCCCCccccccccCCCCCC
Q 005207 231 ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLK 309 (709)
Q Consensus 231 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~ 309 (709)
+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+..+++|+
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence 788888888888888877777777777888888888877776 4555555555666666666555555555555555555
Q ss_pred EEEeeCcCCCccCCccccCCCccceeecccccccc-CCccccc-----------------------ccCCcEEEccCCCC
Q 005207 310 TLNLSGCCKLENVPDTLGQVESLEELDISETAVRR-PPSSVFL-----------------------MKNLRTLSFSGCNG 365 (709)
Q Consensus 310 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-l~~~~~~-----------------------l~~L~~L~L~~~~~ 365 (709)
.|++++|...+.+|..+..+++|+.|++++|.+.. ++..+.. .++|+.|++++|+.
T Consensus 408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF 487 (968)
T ss_pred EEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc
Confidence 55555555555555555555555555555555442 2222333 45555555555554
Q ss_pred CCCCCcccc-ccccccccCccccccccCC-CCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc-ccChh
Q 005207 366 PPSSASWHL-HLPFNLMGKSSCLVALMLP-SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPAS 442 (709)
Q Consensus 366 ~~~~~~~~~-~~~~~~~~~~~~~~~~~lp-~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~ 442 (709)
....+.... ...........+.....+| .+.++++|+.|+|++|.++ +.+|..+..+++|+.|+|++|++. .+|..
T Consensus 488 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS-GQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred CCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc-ccCChhHhCcccCCEEECCCCcccccCChh
Confidence 322221100 0011111122222222344 3889999999999999996 789999999999999999999998 89999
Q ss_pred hhcCCCcCeeccccccccccCCC
Q 005207 443 INSLLNLKELEMEDCKRLQFLPQ 465 (709)
Q Consensus 443 i~~l~~L~~L~L~~c~~L~~lp~ 465 (709)
+..+++|+.|++++|+....+|.
T Consensus 567 l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 567 LGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred HhcCcccCEEeccCCcceeeCCC
Confidence 99999999999999998888885
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=7.6e-32 Score=278.12 Aligned_cols=384 Identities=21% Similarity=0.196 Sum_probs=308.1
Q ss_pred CCcceEEecCccccCc-----ccccCcCccEEEeeCCCCCCCCCcC--CcCCceEEEcccCCccccccccccccCCcEEE
Q 005207 45 TNLGLLKINNVQLLEG-----LEYLSNKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMK 117 (709)
Q Consensus 45 ~~L~~L~l~~~~l~~~-----~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 117 (709)
.+-+.|+++++.+... ...+|..-+.|++++|.+..+...+ ++++|++++|.+|.++.+|.......+|+.|+
T Consensus 52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLD 131 (873)
T ss_pred CCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEe
Confidence 3467778888877642 3345667888999999988877553 89999999999999999998888888899999
Q ss_pred cCCCCCCCCC-CCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeecc
Q 005207 118 LSHSENLIKT-PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLD 196 (709)
Q Consensus 118 Ls~~~~~~~~-~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~ 196 (709)
|.+|.+.... ..++.++.|+.|||+.| .+.+++..-+. .-.++++|+|++|.+...-...|..+.+|..|.++
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp-----~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFP-----AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCC-----CCCCceEEeeccccccccccccccccchheeeecc
Confidence 9999876654 45888899999999987 56666643222 13578899999999988888888999999999999
Q ss_pred CCCccccCccc-ccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccC
Q 005207 197 GTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP 275 (709)
Q Consensus 197 ~~~i~~lp~~l-~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~ 275 (709)
.|.++.+|... .++++|+.|+|..|..-..--..|.++++|+.|.|..|.+...-...|-.+.++++|+|..|++.++.
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh
Confidence 99999998754 45999999999886543332445888999999999999988888888889999999999999999876
Q ss_pred c-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCccc-cccc
Q 005207 276 S-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSV-FLMK 353 (709)
Q Consensus 276 ~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~-~~l~ 353 (709)
. ++-.++.|+.|++++|.+...-+++...+++|+.|+|+.|.+...-+..+..+..|++|.|+.|.+..+.... ..++
T Consensus 286 ~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls 365 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS 365 (873)
T ss_pred cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence 5 4778999999999999998888888888999999999999988888888889999999999999999776654 4589
Q ss_pred CCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCC
Q 005207 354 NLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSK 433 (709)
Q Consensus 354 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~ 433 (709)
+|++|+|+.|........ .-..+.++++|+.|++.+|++. .....++.++++|+.|+|.+
T Consensus 366 sL~~LdLr~N~ls~~IED-------------------aa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIED-------------------AAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred hhhhhcCcCCeEEEEEec-------------------chhhhccchhhhheeecCceee-ecchhhhccCcccceecCCC
Confidence 999999999874321111 1112778999999999999984 33346788999999999999
Q ss_pred CCCcccC-hhhhcCCCcCeeccc
Q 005207 434 NNFVTLP-ASINSLLNLKELEME 455 (709)
Q Consensus 434 n~l~~lp-~~i~~l~~L~~L~L~ 455 (709)
|.|.++. ..+..+ .|++|.+.
T Consensus 426 NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 426 NAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred Ccceeecccccccc-hhhhhhhc
Confidence 9988664 466666 88888765
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=8.9e-31 Score=270.30 Aligned_cols=367 Identities=19% Similarity=0.198 Sum_probs=309.0
Q ss_pred cceEEecCccccC----cccccCcCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccc-cccccccCCcEEEcCC
Q 005207 47 LGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSH 120 (709)
Q Consensus 47 L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~ 120 (709)
-+.|++++|.+.. .+..+| +|+.+++..|.++.+|... ...+|+.|+|.+|.|+.+. +.++.++.|+.||||.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~-nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLP-NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCC-cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 4569999999874 345564 9999999999999999877 6677999999999999886 6689999999999999
Q ss_pred CCCCCCC-CCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCC
Q 005207 121 SENLIKT-PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTD 199 (709)
Q Consensus 121 ~~~~~~~-~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~ 199 (709)
|.+.... +.|..-.++++|+|++| .++.+... ....+.+|-+|.|+.|++....+..|.++++|+.|++..|.
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~-----~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASN-RITTLETG-----HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccc-cccccccc-----cccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 9886654 67888899999999997 55554332 22336689999999999999888999999999999999999
Q ss_pred cccc-CcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccC-cc
Q 005207 200 IKEL-PLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP-SS 277 (709)
Q Consensus 200 i~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~-~~ 277 (709)
|..+ -..+.++.+|+.|.+..|+..+--...|..+.++++|+|+.|++......++-++..|+.|+++.|.|..+. .+
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence 9976 567899999999999998877666777888999999999999999888888999999999999999999764 56
Q ss_pred cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc----cCCccccccc
Q 005207 278 IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR----RPPSSVFLMK 353 (709)
Q Consensus 278 ~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~----~l~~~~~~l~ 353 (709)
....++|+.|+|++|++..--+.++..+..|++|+|+.|++...-...+..+.+|++|||+.|.+. +-...+..++
T Consensus 313 WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~ 392 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP 392 (873)
T ss_pred hhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence 788999999999999998888888999999999999999887766677888999999999999887 2233455699
Q ss_pred CCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCC
Q 005207 354 NLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSK 433 (709)
Q Consensus 354 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~ 433 (709)
+|+.|.+.||+..... -..+.+++.|++|||.+|.+. ..-|++|..+ .|++|.+..
T Consensus 393 ~LrkL~l~gNqlk~I~----------------------krAfsgl~~LE~LdL~~Naia-SIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 393 SLRKLRLTGNQLKSIP----------------------KRAFSGLEALEHLDLGDNAIA-SIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhheeecCceeeecc----------------------hhhhccCcccceecCCCCcce-eecccccccc-hhhhhhhcc
Confidence 9999999999843211 112889999999999999985 6778899988 999998875
Q ss_pred ------CCCcccChhhh
Q 005207 434 ------NNFVTLPASIN 444 (709)
Q Consensus 434 ------n~l~~lp~~i~ 444 (709)
|++.-++.++.
T Consensus 449 ssflCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 449 SSFLCDCQLKWLAQWLY 465 (873)
T ss_pred cceEEeccHHHHHHHHH
Confidence 45555555553
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=4.6e-32 Score=281.08 Aligned_cols=362 Identities=23% Similarity=0.290 Sum_probs=230.2
Q ss_pred CcceEEecCccccCcc-----cccCcCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCcEEEcC
Q 005207 46 NLGLLKINNVQLLEGL-----EYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLS 119 (709)
Q Consensus 46 ~L~~L~l~~~~l~~~~-----~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls 119 (709)
-.|-.|+++|.++++- ..+ +++++|.+...++..+|... .+.+|++|.+++|++..+-..+..++.||.+.+.
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence 3455566666665432 222 45666666666666666655 5666666666666666666666666666666666
Q ss_pred CCCCCC--CCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccC
Q 005207 120 HSENLI--KTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDG 197 (709)
Q Consensus 120 ~~~~~~--~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~ 197 (709)
+|++.. .++++-.+..|..|||++| .+.++|..+.. -+++-.|+||+|.+.......+-+++.|-.|++++
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~------AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEY------AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchh-hhhhcchhhhh------hcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 665432 2345556666666666664 45555543222 23344455554444433334444444444445544
Q ss_pred CCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCc--ccC
Q 005207 198 TDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT--EVP 275 (709)
Q Consensus 198 ~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~--~l~ 275 (709)
|.+..+|+.+.. +..|+.|.|++|.+....-..+..|.+|+.|++++++-+ .+|
T Consensus 160 NrLe~LPPQ~RR------------------------L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P 215 (1255)
T KOG0444|consen 160 NRLEMLPPQIRR------------------------LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP 215 (1255)
T ss_pred chhhhcCHHHHH------------------------HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCC
Confidence 444444444444 445555555554443332233334455555555555433 556
Q ss_pred cccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCC
Q 005207 276 SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNL 355 (709)
Q Consensus 276 ~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L 355 (709)
.++..+.+|..++++.|. +..+|+.+.++++|+.|+|++|.+.+ +....+...+|++|+++.|.++.+|+.+..+++|
T Consensus 216 tsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL 293 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKL 293 (1255)
T ss_pred CchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHH
Confidence 666666666666666543 34456666666666666666655433 3334556678888888888888888888888888
Q ss_pred cEEEccCCCCCCCCCccccccccccccCccccccccCCC-CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCC
Q 005207 356 RTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS-LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKN 434 (709)
Q Consensus 356 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n 434 (709)
+.|.+.+|+... ..+|+ ++.+..|+.+..++|.+ +.+|+.++.|..|+.|.|++|
T Consensus 294 ~kLy~n~NkL~F----------------------eGiPSGIGKL~~Levf~aanN~L--ElVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 294 TKLYANNNKLTF----------------------EGIPSGIGKLIQLEVFHAANNKL--ELVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred HHHHhccCcccc----------------------cCCccchhhhhhhHHHHhhcccc--ccCchhhhhhHHHHHhccccc
Confidence 888888877321 13455 78888888899999988 689999999999999999999
Q ss_pred CCcccChhhhcCCCcCeeccccccccccCCC
Q 005207 435 NFVTLPASINSLLNLKELEMEDCKRLQFLPQ 465 (709)
Q Consensus 435 ~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 465 (709)
.+.++|+.|.-|+-|+.|++..|++|..-|+
T Consensus 350 rLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 350 RLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 9999999999999999999999999885554
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=5.4e-32 Score=268.07 Aligned_cols=248 Identities=23% Similarity=0.313 Sum_probs=162.4
Q ss_pred hhhcCCCCcceEEecCcccc---CcccccCcCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCc
Q 005207 39 KAFSLMTNLGLLKINNVQLL---EGLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLK 114 (709)
Q Consensus 39 ~~f~~l~~L~~L~l~~~~l~---~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 114 (709)
++...-..|+.|++++|.+. .++..++ .|.+|.+++|.+..+|..+ .+..++.|+.++|++..+|+.+..+.+|+
T Consensus 39 e~wW~qv~l~~lils~N~l~~l~~dl~nL~-~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 39 ENWWEQVDLQKLILSHNDLEVLREDLKNLA-CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLV 117 (565)
T ss_pred hhhhhhcchhhhhhccCchhhccHhhhccc-ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhh
Confidence 34444566788888888754 5666664 7888999999998888877 88888999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccC-----------------CCccEEEccCCCCC
Q 005207 115 VMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFV-----------------ESLKILILSGCLKL 177 (709)
Q Consensus 115 ~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l-----------------~~L~~L~Ls~~~~~ 177 (709)
.++.++|.....+++++.+..|+.++..+| .+..+|.+++++.++..+ +.|+.||...| ..
T Consensus 118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L 195 (565)
T KOG0472|consen 118 KLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LL 195 (565)
T ss_pred hhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hh
Confidence 999999988888888888889998888776 778888888776544331 23334443332 22
Q ss_pred CcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCccccc-CCccCcEEeeeCCCCCCcCchhhc
Q 005207 178 RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAIS-SFQCLRNLKLSGCSKLKKFPQIVT 256 (709)
Q Consensus 178 ~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~Ls~~~~~~~~~~~~~ 256 (709)
+.+|+.++.+.+|..|++..|.+..+| .|..+..|++|.++. +.++.+|.... .+++|.+||+.+|+ .+..|+.+.
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~c 272 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEIC 272 (565)
T ss_pred hcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccccc-cccCchHHH
Confidence 334444555555555555555555555 445555555555444 23444444432 55556666665543 334455555
Q ss_pred cCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCC
Q 005207 257 TMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCK 293 (709)
Q Consensus 257 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~ 293 (709)
-+.+|+.||+++|.|+.+|.+++++ .|+.|.+.+|+
T Consensus 273 lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 5666666666666666666666666 56666665554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=5.5e-31 Score=273.14 Aligned_cols=363 Identities=21% Similarity=0.350 Sum_probs=291.9
Q ss_pred ccEEEeeCCCCC--CCCCcC-CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCC
Q 005207 68 LRLLDWHRYPLK--SLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC 144 (709)
Q Consensus 68 L~~L~l~~~~l~--~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~ 144 (709)
.|-.++++|.++ .+|.+. .+.+++-|.|..+++..+|+.+..+.+|+.|.+++|++......++.++.|+.++++.|
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc
Confidence 455566666654 566666 67777777777777777777777777777777777766555555666666666666554
Q ss_pred ccccccCcccccccccccCCCccEEEccCCCC-CCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCC
Q 005207 145 TKLRKVHPSLLLHNKLIFVESLKILILSGCLK-LRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKN 223 (709)
Q Consensus 145 ~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~-~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~ 223 (709)
.+ ...+|..+..+..|..|+++.|.++++|..+.+.+++..|+|++| .
T Consensus 89 ------------------------------~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~ 137 (1255)
T KOG0444|consen 89 ------------------------------NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-N 137 (1255)
T ss_pred ------------------------------ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-c
Confidence 32 234666677778888888888888889988888889999999885 4
Q ss_pred CCcCccc-ccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCccc-CcccCCCCCCCEEeccCCCC-Cccccc
Q 005207 224 LSSLPVA-ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKN-FARVPS 300 (709)
Q Consensus 224 l~~lp~~-l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~-~~~l~~ 300 (709)
++.+|.. +-+++-|-.|+|++|. +..+|.....+.+|++|.|++|.+... ...+..+++|+.|.+++.+. +..+|.
T Consensus 138 IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt 216 (1255)
T KOG0444|consen 138 IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT 216 (1255)
T ss_pred cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC
Confidence 6667654 5678888899999876 456677788899999999999987632 12344578899999998654 467899
Q ss_pred cccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCcccccccccc
Q 005207 301 SINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNL 380 (709)
Q Consensus 301 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 380 (709)
++..+.+|..++++.|. +..+|+.+-.+++|+.|+|++|.|+++........+|++|+++.|+.+
T Consensus 217 sld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-------------- 281 (1255)
T KOG0444|consen 217 SLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-------------- 281 (1255)
T ss_pred chhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc--------------
Confidence 99999999999999865 567899999999999999999999999999999999999999999844
Q ss_pred ccCccccccccCCC-CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccc
Q 005207 381 MGKSSCLVALMLPS-LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKR 459 (709)
Q Consensus 381 ~~~~~~~~~~~lp~-l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 459 (709)
.+|. ++.+++|+.|.+.+|++.-+.+|+.++.+..|+++..++|++.-+|+++..|.+|+.|.|++|.
T Consensus 282 ----------~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr- 350 (1255)
T KOG0444|consen 282 ----------VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR- 350 (1255)
T ss_pred ----------cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-
Confidence 2444 7889999999999999998999999999999999999999999999999999999999999884
Q ss_pred cccCCC---CCCCccEEEecCCCCcceecCcc
Q 005207 460 LQFLPQ---LPPNIIFVKVNGCSSLVTLLGAL 488 (709)
Q Consensus 460 L~~lp~---lp~sL~~L~i~~C~~L~~l~~~~ 488 (709)
|..+|+ +.+.|+.|++++-|+|..-+.+.
T Consensus 351 LiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 351 LITLPEAIHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred eeechhhhhhcCCcceeeccCCcCccCCCCcc
Confidence 666886 56899999999999999877554
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=5.7e-30 Score=253.74 Aligned_cols=407 Identities=23% Similarity=0.269 Sum_probs=269.6
Q ss_pred hccCCcceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccC---cccccCcCccEEEeeCCCCCCCCCcC-Cc
Q 005207 12 KKYGSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLE---GLEYLSNKLRLLDWHRYPLKSLPSNL-QL 87 (709)
Q Consensus 12 ~~~g~~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~---~~~~l~~~L~~L~l~~~~l~~lp~~~-~l 87 (709)
+.+.......+.+..+ ...+++ .+..++..++.|+.++|.++. .+... .+|+.|+++.|.++.+|+++ .+
T Consensus 63 dl~nL~~l~vl~~~~n----~l~~lp-~aig~l~~l~~l~vs~n~ls~lp~~i~s~-~~l~~l~~s~n~~~el~~~i~~~ 136 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDN----KLSQLP-AAIGELEALKSLNVSHNKLSELPEQIGSL-ISLVKLDCSSNELKELPDSIGRL 136 (565)
T ss_pred hhhcccceeEEEeccc----hhhhCC-HHHHHHHHHHHhhcccchHhhccHHHhhh-hhhhhhhccccceeecCchHHHH
Confidence 3333444444444444 223333 455566666666666666443 22333 36777888888888888776 77
Q ss_pred CCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCcc
Q 005207 88 DKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLK 167 (709)
Q Consensus 88 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~ 167 (709)
..|..++..+|+|..+|+++..+.+|..+++.+|++...+|+.-.|+.|++||...| .++.+|+.++.+. +|+
T Consensus 137 ~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~------~L~ 209 (565)
T KOG0472|consen 137 LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLE------SLE 209 (565)
T ss_pred hhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchh------hhH
Confidence 788888888888888888888888888888888877777776555778888887775 6777787777643 344
Q ss_pred EEEccCCCCC----------------------CcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCC
Q 005207 168 ILILSGCLKL----------------------RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS 225 (709)
Q Consensus 168 ~L~Ls~~~~~----------------------~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~ 225 (709)
.|++..|.+. ....+...++.+|..||+..|+++++|..+.-+.+|..||+++ +.+.
T Consensus 210 ~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSN-N~is 288 (565)
T KOG0472|consen 210 LLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSN-NDIS 288 (565)
T ss_pred HHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccC-Cccc
Confidence 4555544432 2222233355666666666666666666666666666666665 3345
Q ss_pred cCcccccCCccCcEEeeeCCCCCCcCc-----------------------------------------hhhccCCCCCee
Q 005207 226 SLPVAISSFQCLRNLKLSGCSKLKKFP-----------------------------------------QIVTTMEDLSEL 264 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~-----------------------------------------~~~~~l~~L~~L 264 (709)
.+|..++++ +|+.|-+.||.+-+.-. .....+.+.+.|
T Consensus 289 ~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL 367 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKIL 367 (565)
T ss_pred cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhh
Confidence 555556666 66666666653311000 000112345556
Q ss_pred eccCccCcccCcccCCCCC---CCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccc
Q 005207 265 NLDGTSITEVPSSIELLPG---LELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 341 (709)
Q Consensus 265 ~L~~~~i~~l~~~~~~l~~---L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 341 (709)
++++-+++.+|.......+ ....+++.|++ ..+|..+..++.+.+.-+..+...+.+|..+..+++|..|++++|.
T Consensus 368 ~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL-~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~ 446 (565)
T KOG0472|consen 368 DVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQL-CELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL 446 (565)
T ss_pred cccccccccCCHHHHHHhhhcceEEEecccchH-hhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch
Confidence 6666666666654322222 67788888764 4577777767777777677778888889999999999999999999
Q ss_pred cccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCC-CCCCCCCCEEeccCCCCCCCCCCCCC
Q 005207 342 VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS-LSGLRSLTKLDLSDCGLGEGAIPSDI 420 (709)
Q Consensus 342 i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-l~~l~~L~~L~Ls~n~l~~~~~~~~l 420 (709)
+.++|..++.+..|+.|+++.|+.. .+|. +..+..|+.+-.++|++. ..-++.+
T Consensus 447 Ln~LP~e~~~lv~Lq~LnlS~NrFr------------------------~lP~~~y~lq~lEtllas~nqi~-~vd~~~l 501 (565)
T KOG0472|consen 447 LNDLPEEMGSLVRLQTLNLSFNRFR------------------------MLPECLYELQTLETLLASNNQIG-SVDPSGL 501 (565)
T ss_pred hhhcchhhhhhhhhheecccccccc------------------------cchHHHhhHHHHHHHHhcccccc-ccChHHh
Confidence 9999999999999999999998621 1222 223345666666778884 2333448
Q ss_pred CCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccc
Q 005207 421 GNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKR 459 (709)
Q Consensus 421 ~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 459 (709)
.++.+|..|||.+|.+..+|+.++++++|++|++.+|+.
T Consensus 502 ~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence 899999999999999999999999999999999999974
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=8.9e-28 Score=261.04 Aligned_cols=389 Identities=22% Similarity=0.214 Sum_probs=258.4
Q ss_pred ehhhhcCCCCcceEEecCccccC---cccccCcCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccC
Q 005207 37 SAKAFSLMTNLGLLKINNVQLLE---GLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNM 112 (709)
Q Consensus 37 ~~~~f~~l~~L~~L~l~~~~l~~---~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~ 112 (709)
+-++.++.-+|+.|++++|++.. .+..+ .+|+.|.++.|.+.++|... ++.+|++|+|.+|.++.+|.++..+++
T Consensus 37 pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l-~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 37 PLEFVEKRVKLKSLDLSNNQISSFPIQITLL-SHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKN 115 (1081)
T ss_pred chHHhhheeeeEEeeccccccccCCchhhhH-HHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhc
Confidence 34566666669999999999764 33444 48999999999999999766 899999999999999999999999999
Q ss_pred CcEEEcCCCCCCCCCCCCCCCCCccEEeccCC-------------------ccccccCcccccccc-------------c
Q 005207 113 LKVMKLSHSENLIKTPDFTEAPNLEELYLEGC-------------------TKLRKVHPSLLLHNK-------------L 160 (709)
Q Consensus 113 L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~-------------------~~l~~~~~~i~~l~~-------------L 160 (709)
|++|++++|.+...++.+..+..++.+..++| .....++..+..+.. +
T Consensus 116 l~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dl 195 (1081)
T KOG0618|consen 116 LQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDL 195 (1081)
T ss_pred ccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhh
Confidence 99999999987766554444443333333333 222222222222211 0
Q ss_pred ccC--------------------CCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCC
Q 005207 161 IFV--------------------ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLND 220 (709)
Q Consensus 161 ~~l--------------------~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~ 220 (709)
..+ ++|+.|+.++|.+....+ -..-.+|++++++.+.++.+|.++..+.+|+.|+..+
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANH 273 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcchHHHHhcccceEecccc
Confidence 001 344444444444432111 1223578888888888888888888888888888887
Q ss_pred CCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCccc----------------------
Q 005207 221 CKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSI---------------------- 278 (709)
Q Consensus 221 ~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~---------------------- 278 (709)
|.. ..+|..+...++|+.|....|.+ ..+|...+.++.|++|+|..|.+..+|..+
T Consensus 274 N~l-~~lp~ri~~~~~L~~l~~~~nel-~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp 351 (1081)
T KOG0618|consen 274 NRL-VALPLRISRITSLVSLSAAYNEL-EYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP 351 (1081)
T ss_pred hhH-HhhHHHHhhhhhHHHHHhhhhhh-hhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc
Confidence 654 66666666677777777766553 334555566677777777777776655421
Q ss_pred ----CCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccC
Q 005207 279 ----ELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKN 354 (709)
Q Consensus 279 ----~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~ 354 (709)
...+.|+.|++.+|.+....-..+.+.+.||.|+|++|.+.......+.+++.|++|+|++|.++.+|..+..++.
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGR 431 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhh
Confidence 1234566666677766666555666777777777777655444444566777777777777777777777777777
Q ss_pred CcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCC
Q 005207 355 LRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKN 434 (709)
Q Consensus 355 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n 434 (709)
|++|...+|... .+|.+..++.|+.+|++.|++.+..+|..... ++|++||++||
T Consensus 432 L~tL~ahsN~l~------------------------~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN 486 (1081)
T KOG0618|consen 432 LHTLRAHSNQLL------------------------SFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGN 486 (1081)
T ss_pred hHHHhhcCCcee------------------------echhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCC
Confidence 777777776632 35567788888888888888877666665544 78888888888
Q ss_pred CCccc-ChhhhcCCCcCeeccc
Q 005207 435 NFVTL-PASINSLLNLKELEME 455 (709)
Q Consensus 435 ~l~~l-p~~i~~l~~L~~L~L~ 455 (709)
.-..+ -..+..+.++...++.
T Consensus 487 ~~l~~d~~~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 487 TRLVFDHKTLKVLKSLSQMDIT 508 (1081)
T ss_pred cccccchhhhHHhhhhhheecc
Confidence 53222 1233344444444443
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=3.4e-27 Score=256.59 Aligned_cols=419 Identities=21% Similarity=0.228 Sum_probs=294.7
Q ss_pred hhhcCCCCcceEEecCccccCcc----cccCcCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCC
Q 005207 39 KAFSLMTNLGLLKINNVQLLEGL----EYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNML 113 (709)
Q Consensus 39 ~~f~~l~~L~~L~l~~~~l~~~~----~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L 113 (709)
..|..-. ++.|+++.|.+-..+ .. .-+|+.|++++|.+..+|..+ .+.+|+.|+++.|.|..+|....++.+|
T Consensus 16 ~i~~~~~-~~~ln~~~N~~l~~pl~~~~~-~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l 93 (1081)
T KOG0618|consen 16 QILNNEA-LQILNLRRNSLLSRPLEFVEK-RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNL 93 (1081)
T ss_pred hhccHHH-HHhhhccccccccCchHHhhh-eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcc
Confidence 3343333 788888887754322 11 135999999999999999888 8999999999999999999999999999
Q ss_pred cEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCccccccccccc-----------C--CCccEEEccCCCCCCcC
Q 005207 114 KVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF-----------V--ESLKILILSGCLKLRKF 180 (709)
Q Consensus 114 ~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~-----------l--~~L~~L~Ls~~~~~~~~ 180 (709)
++++|.+|+....+..+..+.+|+.|++++| ....+|.-+..+..+.. + ..++.+++..+.+.+.+
T Consensus 94 ~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 94 QYLNLKNNRLQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSF 172 (1081)
T ss_pred hhheeccchhhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccch
Confidence 9999999987777778999999999999997 56666655544321111 1 23566666667666777
Q ss_pred CccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCC
Q 005207 181 PHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMED 260 (709)
Q Consensus 181 ~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~ 260 (709)
+..+..+++ .|++.+|.+. -..+..+.+|+.|....+.... + .-.-++|+.|+.+.|.+....+. ..-.+
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~-l---~~~g~~l~~L~a~~n~l~~~~~~--p~p~n 242 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSE-L---EISGPSLTALYADHNPLTTLDVH--PVPLN 242 (1081)
T ss_pred hcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccce-E---EecCcchheeeeccCcceeeccc--ccccc
Confidence 776666666 6888888776 2344556666666665543222 1 11246788888888877743332 22357
Q ss_pred CCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccc
Q 005207 261 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340 (709)
Q Consensus 261 L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 340 (709)
|++++++.+.+..+|..++.+.+|+.+.+.+|.+ ..+|..+....+|+.|.+..|. +..+|...+.+.+|++|+|..|
T Consensus 243 l~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 243 LQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhc
Confidence 8889999999999998888999999999988876 6677778888888888887764 4556777788889999999999
Q ss_pred ccccCCccccc--ccCCcEEEccCCCCCCCCCcccc--ccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCC
Q 005207 341 AVRRPPSSVFL--MKNLRTLSFSGCNGPPSSASWHL--HLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAI 416 (709)
Q Consensus 341 ~i~~l~~~~~~--l~~L~~L~L~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~ 416 (709)
.+..+|..+.. ..+|+.|+.+.++.......... .....+....+......+|.+.++.+|+.|+|++|++. .+
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~--~f 398 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN--SF 398 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc--cC
Confidence 99888875543 23366666666664433321111 11111222234455556788899999999999999984 46
Q ss_pred CC-CCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccccccCCCCC--CCccEEEe
Q 005207 417 PS-DIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLP--PNIIFVKV 475 (709)
Q Consensus 417 ~~-~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~sL~~L~i 475 (709)
|+ .+.+++.|++|+||||+++.+|..+..++.|++|...+| .+...|++- +.|+.+++
T Consensus 399 pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDL 459 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEec
Confidence 65 477889999999999999988877776666666666555 344444421 34444444
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=7.4e-23 Score=247.87 Aligned_cols=339 Identities=28% Similarity=0.432 Sum_probs=252.1
Q ss_pred CCcceEEEEeecCCCC----cceEeeehhhhcCC-CCcceEEecCccccCccc-ccCcCccEEEeeCCCCCCCCCcC-Cc
Q 005207 15 GSELVEGMIIDDYFFP----VNEVHLSAKAFSLM-TNLGLLKINNVQLLEGLE-YLSNKLRLLDWHRYPLKSLPSNL-QL 87 (709)
Q Consensus 15 g~~~i~~i~ld~~~~~----~~~~~l~~~~f~~l-~~L~~L~l~~~~l~~~~~-~l~~~L~~L~l~~~~l~~lp~~~-~l 87 (709)
+..+++-+.+... .. .....++ +.|..+ .+||.|.+.++.+..-+. .-+.+|+.|++.++.++.+|..+ .+
T Consensus 556 ~m~~L~~L~~~~~-~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l 633 (1153)
T PLN03210 556 GMRNLLFLKFYTK-KWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSL 633 (1153)
T ss_pred cCccccEEEEecc-cccccccceeecC-cchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccC
Confidence 4555555555332 11 0123343 456666 469999999887543221 12479999999999999999877 89
Q ss_pred CCceEEEcccC-CccccccccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCcccccccccccCCC
Q 005207 88 DKIVEFKMCYS-RIEELWKGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVES 165 (709)
Q Consensus 88 ~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~ 165 (709)
++|+.|+|+++ .++.+| .+..+++|+.|+|++|......| .+..+++|+.|++++|..+..+|..+ .+++
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-------~l~s 705 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-------NLKS 705 (1153)
T ss_pred CCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-------CCCC
Confidence 99999999986 467777 47889999999999998777765 58899999999999999999988765 2678
Q ss_pred ccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCC
Q 005207 166 LKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGC 245 (709)
Q Consensus 166 L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~ 245 (709)
|+.|++++|.....+|.. ..+|+.|++++|.+..+|..+ .+++|+.|.+.++.... ++..+..+
T Consensus 706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~-l~~~~~~l----------- 769 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEK-LWERVQPL----------- 769 (1153)
T ss_pred CCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhh-cccccccc-----------
Confidence 999999999888777754 467889999999999888765 56777777776644211 11111101
Q ss_pred CCCCcCchhhccCCCCCeeeccCcc-CcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCc
Q 005207 246 SKLKKFPQIVTTMEDLSELNLDGTS-ITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD 324 (709)
Q Consensus 246 ~~~~~~~~~~~~l~~L~~L~L~~~~-i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~ 324 (709)
.+......++|+.|++++|. +.++|..++.+++|+.|++++|..++.+|..+ .+++|+.|++++|..+..+|.
T Consensus 770 -----~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 770 -----TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred -----chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence 11112234678888888774 45788888889999999999998888888776 689999999999988887775
Q ss_pred cccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEE
Q 005207 325 TLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKL 404 (709)
Q Consensus 325 ~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L 404 (709)
. .++|+.|++++|.+..+|..+..+++|+.|++++|+.+...+ +.+..+++|+.|
T Consensus 844 ~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~----------------------~~~~~L~~L~~L 898 (1153)
T PLN03210 844 I---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS----------------------LNISKLKHLETV 898 (1153)
T ss_pred c---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC----------------------cccccccCCCee
Confidence 4 467899999999999999988889999999999887544321 114556677777
Q ss_pred eccCCC
Q 005207 405 DLSDCG 410 (709)
Q Consensus 405 ~Ls~n~ 410 (709)
++++|.
T Consensus 899 ~l~~C~ 904 (1153)
T PLN03210 899 DFSDCG 904 (1153)
T ss_pred ecCCCc
Confidence 777774
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=9.9e-18 Score=189.21 Aligned_cols=257 Identities=21% Similarity=0.229 Sum_probs=150.7
Q ss_pred CccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCcc
Q 005207 67 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTK 146 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~ 146 (709)
.-..|+++++.++++|..+. .+|+.|++++|+++.+|.. +++|++|+|++|++... |.+ .++|+.|++.+| .
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsL-P~l--p~sL~~L~Ls~N-~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSL-PVL--PPGLLELSIFSN-P 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcc-cCc--ccccceeeccCC-c
Confidence 34455555555555555442 3555566666665555532 35556666666554432 221 245556666555 3
Q ss_pred ccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCc
Q 005207 147 LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS 226 (709)
Q Consensus 147 l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~ 226 (709)
+..+|.. ..+|+.|++++|.+.. +|.. .++|+.|++++|.+..+|... .+|+.|++++|.. ..
T Consensus 274 L~~Lp~l---------p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L-~~ 336 (788)
T PRK15387 274 LTHLPAL---------PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQL-TS 336 (788)
T ss_pred hhhhhhc---------hhhcCEEECcCCcccc-cccc---ccccceeECCCCccccCCCCc---ccccccccccCcc-cc
Confidence 3433321 1345556666655442 3321 345666666666666665422 2455566666443 34
Q ss_pred CcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCC
Q 005207 227 LPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLK 306 (709)
Q Consensus 227 lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~ 306 (709)
+|. + ..+|+.|++++|.+.. +|.. ..+|+.|++++|.+..+|.. ..+|+.|++++|.+. .+|.. .+
T Consensus 337 LP~-l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s 402 (788)
T PRK15387 337 LPT-L--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT-SLPVL---PS 402 (788)
T ss_pred ccc-c--ccccceEecCCCccCC-CCCC---CcccceehhhccccccCccc---ccccceEEecCCccc-CCCCc---cc
Confidence 443 1 2467777777766553 3332 24567777777777777653 346778888777654 34432 35
Q ss_pred CCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCC
Q 005207 307 SLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGP 366 (709)
Q Consensus 307 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~ 366 (709)
+|+.|++++|.+. .+|.. ..+|+.|++++|.++.+|..+..+++|+.|++++|+..
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence 7888888887654 35543 34678888888888888888888888888998888754
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=1.9e-17 Score=186.91 Aligned_cols=259 Identities=18% Similarity=0.181 Sum_probs=207.0
Q ss_pred CCcceEEecCccccCcccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCC
Q 005207 45 TNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENL 124 (709)
Q Consensus 45 ~~L~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~ 124 (709)
.+-..|+++++.+..-+..++.+|+.|++.+|.++.+|. .+++|++|+|++|+|+.+|.. .++|+.|++++|.+.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc---ccccceeeccCCchh
Confidence 346789999999887666677899999999999999997 468999999999999999853 478999999999865
Q ss_pred CCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccC
Q 005207 125 IKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP 204 (709)
Q Consensus 125 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp 204 (709)
..++ ...+|+.|++++| .+..+|.. +++|+.|++++|.+.+ +|.. ...|+.|++++|.++.+|
T Consensus 276 ~Lp~---lp~~L~~L~Ls~N-~Lt~LP~~---------p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 276 HLPA---LPSGLCKLWIFGN-QLTSLPVL---------PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSLP 338 (788)
T ss_pred hhhh---chhhcCEEECcCC-cccccccc---------ccccceeECCCCcccc-CCCC---cccccccccccCcccccc
Confidence 4332 2367899999998 56666642 4679999999997765 4543 246888999999999888
Q ss_pred cccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCC
Q 005207 205 LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGL 284 (709)
Q Consensus 205 ~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L 284 (709)
.. ..+|+.|++++|+ +..+|.. ..+|+.|++++|.+.. +|.. ..+|+.|++++|.++.+|.. .++|
T Consensus 339 ~l---p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L 404 (788)
T PRK15387 339 TL---PSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPVL---PSEL 404 (788)
T ss_pred cc---ccccceEecCCCc-cCCCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCCc---ccCC
Confidence 52 2589999999865 4567753 4578899999987664 5543 35799999999999998864 3689
Q ss_pred CEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccccccc
Q 005207 285 ELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 344 (709)
Q Consensus 285 ~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~ 344 (709)
+.|++++|.+. .+|.. ..+|+.|++++|.+. .+|..+..+++|+.|++++|+++.
T Consensus 405 ~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 405 KELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred CEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence 99999999865 46653 357889999998765 689899999999999999999984
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=7.9e-18 Score=191.28 Aligned_cols=245 Identities=19% Similarity=0.235 Sum_probs=129.6
Q ss_pred CcceEEecCccccCcccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCC
Q 005207 46 NLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLI 125 (709)
Q Consensus 46 ~L~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~ 125 (709)
+...|+++++.+...+..+|.+|+.|++++|.++.+|..+. .+|++|++++|+++.+|..+. .+|+.|+|++|.+..
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~ 255 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITE 255 (754)
T ss_pred CceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCCccCc
Confidence 35566666666665555556667777777777777765443 467777777777776665442 356667777666553
Q ss_pred CCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCc
Q 005207 126 KTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL 205 (709)
Q Consensus 126 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~ 205 (709)
.+..+. .+|+.|++++| .+..+|..+. ++|+.|++++|.+.. +|..+. +.|+.|++++|.+..+|.
T Consensus 256 LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--------~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 256 LPERLP--SALQSLDLFHN-KISCLPENLP--------EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPE 321 (754)
T ss_pred CChhHh--CCCCEEECcCC-ccCccccccC--------CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCc
Confidence 332232 35666666654 4445554321 356666666665443 333221 356666666666665554
Q ss_pred ccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCC
Q 005207 206 SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLE 285 (709)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~ 285 (709)
.+. ++|+.|++++|. +..+|..+ .++|+.|++++|.+. .+|..+ .++|+.|+|++|.+..+|..+. +.|+
T Consensus 322 ~l~--~sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~ 391 (754)
T PRK15370 322 TLP--PGLKTLEAGENA-LTSLPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLP--AALQ 391 (754)
T ss_pred ccc--ccceeccccCCc-cccCChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHH
Confidence 332 456666666554 23344433 245566666655443 233322 1355555555555555554332 2455
Q ss_pred EEeccCCCCCccccccc----cCCCCCCEEEeeCcCC
Q 005207 286 LLNLNDCKNFARVPSSI----NGLKSLKTLNLSGCCK 318 (709)
Q Consensus 286 ~L~L~~~~~~~~l~~~~----~~l~~L~~L~L~~~~~ 318 (709)
.|++++|.+. .+|..+ ..++++..|++.+|++
T Consensus 392 ~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 392 IMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 5555555443 233222 2234445555555443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1.1e-17 Score=190.02 Aligned_cols=245 Identities=18% Similarity=0.262 Sum_probs=127.4
Q ss_pred cCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCc
Q 005207 66 NKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 145 (709)
.+...|+++++.++.+|..+ +++|+.|+|++|+|+.+|..+. .+|+.|++++|++...+..+ ..+|+.|+|++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N- 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSIN- 251 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCC-
Confidence 45667777777777777644 3567777777777777765543 46677777666544322222 134566666655
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS 225 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~ 225 (709)
.+..+|..+. .+|+.|+++ +|.+..+|..+. .+|+.|++++|+ +.
T Consensus 252 ~L~~LP~~l~--------s~L~~L~Ls------------------------~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt 296 (754)
T PRK15370 252 RITELPERLP--------SALQSLDLF------------------------HNKISCLPENLP--EELRYLSVYDNS-IR 296 (754)
T ss_pred ccCcCChhHh--------CCCCEEECc------------------------CCccCccccccC--CCCcEEECCCCc-cc
Confidence 3334443221 134444444 444444443332 244444444432 22
Q ss_pred cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCC
Q 005207 226 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGL 305 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l 305 (709)
.+|..+ .++|+.|++++|.+.. +|..+ .++|+.|++++|.++.+|..+ .++|+.|++++|.+. .+|..+ .
T Consensus 297 ~LP~~l--p~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p 366 (754)
T PRK15370 297 TLPAHL--PSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQIT-VLPETL--P 366 (754)
T ss_pred cCcccc--hhhHHHHHhcCCcccc-CCccc--cccceeccccCCccccCChhh--cCcccEEECCCCCCC-cCChhh--c
Confidence 333322 1245555555554432 22211 145666666666666665543 256666666666543 344433 2
Q ss_pred CCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCccccc----ccCCcEEEccCCC
Q 005207 306 KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFL----MKNLRTLSFSGCN 364 (709)
Q Consensus 306 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~----l~~L~~L~L~~~~ 364 (709)
++|++|++++|.+. .+|..+. .+|+.|++++|.+..+|..+.. ++++..|++.+|.
T Consensus 367 ~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 367 PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 46666666666544 3444332 3566677777776666654433 3455555555555
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.72 E-value=9.8e-20 Score=181.31 Aligned_cols=249 Identities=21% Similarity=0.211 Sum_probs=135.0
Q ss_pred ceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCcc
Q 005207 90 IVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLK 167 (709)
Q Consensus 90 L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~ 167 (709)
-++++|..|+|+.||. .|+.+++||.|||++|.+..+.| .|.+++.|-.|-+-+++.++.+|...+. .|.+|+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~-----gL~slq 143 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG-----GLSSLQ 143 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh-----hHHHHH
Confidence 3444444444444442 24444444444444444444333 2444444444444443344444443222 133344
Q ss_pred EEEccCCCCCCcCCccccCCCccceeeccCCCccccCc-ccccCCCCcEEecCCCCCC------------CcCcccccCC
Q 005207 168 ILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNL------------SSLPVAISSF 234 (709)
Q Consensus 168 ~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l------------~~lp~~l~~l 234 (709)
.|.+.-|.+.-...+.+..+++|..|.+..|.+..++. .+..+..++.+.+..+... ...|-.++++
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 44444444444444445555555555555555555444 4444444444444443311 0111111111
Q ss_pred -------------------------ccCcEEeeeCCCCCCcCc-hhhccCCCCCeeeccCccCcccC-cccCCCCCCCEE
Q 005207 235 -------------------------QCLRNLKLSGCSKLKKFP-QIVTTMEDLSELNLDGTSITEVP-SSIELLPGLELL 287 (709)
Q Consensus 235 -------------------------~~L~~L~Ls~~~~~~~~~-~~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L 287 (709)
.++..-..+.|......| ..|..+++|++|+|++|+|+.+. .+|..+..+++|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 111111122333333333 34677888888888888888764 457788888888
Q ss_pred eccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc
Q 005207 288 NLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 343 (709)
Q Consensus 288 ~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 343 (709)
.+..|++...-...|.++..|++|+|.+|.+....|..|..+.+|.+|.+-.|.+.
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 88888766555566777888888888888888888888888888888888777654
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.68 E-value=2e-18 Score=172.11 Aligned_cols=262 Identities=20% Similarity=0.185 Sum_probs=169.7
Q ss_pred EEecCccccCcccccCcCccEEEeeCCCCCCCCCcC--CcCCceEEEcccCCccccc-cccccccCCcEEEcCC-CCCCC
Q 005207 50 LKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSH-SENLI 125 (709)
Q Consensus 50 L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~-~~~~~ 125 (709)
.+.++-.+.+.+..+|..-..++++.|+|+.||... .+++|+.|||++|+|+.|. +.|+.+++|..|-+-+ |++..
T Consensus 51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred EEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 445556677778888999999999999999999765 8999999999999999884 7799999988887777 66655
Q ss_pred CCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCcc---
Q 005207 126 KTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK--- 201 (709)
Q Consensus 126 ~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~--- 201 (709)
... .|.++..|+.|.+.-| .+.-++. ..++.+++|..|.+.+|.+...--..+..+..++.+++..|.+.
T Consensus 131 l~k~~F~gL~slqrLllNan-~i~Cir~-----~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNAN-HINCIRQ-----DALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred hhhhHhhhHHHHHHHhcChh-hhcchhH-----HHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence 543 4899999999988776 2332222 22344666777777777655544446667777777777666521
Q ss_pred cc----------CcccccCCC----------------------CcEE---ecCCCCCCCcCcc-cccCCccCcEEeeeCC
Q 005207 202 EL----------PLSIEHLFG----------------------LVQL---TLNDCKNLSSLPV-AISSFQCLRNLKLSGC 245 (709)
Q Consensus 202 ~l----------p~~l~~l~~----------------------L~~L---~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~~ 245 (709)
.+ |..++...- ++.+ -.+.|......|. .|.++++|+.|++++|
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 11 111111100 1111 0011111122221 2566677777777777
Q ss_pred CCCCcCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcC
Q 005207 246 SKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCC 317 (709)
Q Consensus 246 ~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~ 317 (709)
.+...-+.+|.+...+++|.|.+|++..+.. .|..+..|+.|++.+|++....|..|..+.+|.+|++-+|+
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 7666666666666677777777776665543 35666667777777776666666666666666666665543
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.61 E-value=8.2e-17 Score=169.58 Aligned_cols=260 Identities=23% Similarity=0.244 Sum_probs=143.4
Q ss_pred ccccCCCccceeeccCCCcc-----ccCcccccCCCCcEEecCCCCCC------CcCcccccCCccCcEEeeeCCCCCCc
Q 005207 182 HVVGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCKNL------SSLPVAISSFQCLRNLKLSGCSKLKK 250 (709)
Q Consensus 182 ~~l~~l~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~~~~l------~~lp~~l~~l~~L~~L~Ls~~~~~~~ 250 (709)
..+..+.+|+.|+++++.++ .++..+...++|+.|+++++... ..++..+..+++|+.|++++|.+...
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 33344444555555555552 34444455555666665554332 11233445566666666666666544
Q ss_pred CchhhccCCC---CCeeeccCccCcc-----cCcccCCC-CCCCEEeccCCCCCcc----ccccccCCCCCCEEEeeCcC
Q 005207 251 FPQIVTTMED---LSELNLDGTSITE-----VPSSIELL-PGLELLNLNDCKNFAR----VPSSINGLKSLKTLNLSGCC 317 (709)
Q Consensus 251 ~~~~~~~l~~---L~~L~L~~~~i~~-----l~~~~~~l-~~L~~L~L~~~~~~~~----l~~~~~~l~~L~~L~L~~~~ 317 (709)
.+..+..+.+ |++|++++|.+.. +...+..+ ++|+.|++++|.+.+. ++..+..+++|++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 4444443333 7777777666652 22234445 6777777777765522 23345556677777777776
Q ss_pred CCcc----CCccccCCCccceeecccccccc-----CCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccc
Q 005207 318 KLEN----VPDTLGQVESLEELDISETAVRR-----PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLV 388 (709)
Q Consensus 318 ~~~~----~~~~l~~l~~L~~L~L~~n~i~~-----l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (709)
..+. ++..+..+++|+.|++++|.+.. +...+..+++|++|++++|..... ... ..
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~-~~~--------------~l 241 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA-GAA--------------AL 241 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH-HHH--------------HH
Confidence 5532 22334445677777777777652 233445567788888877762210 000 00
Q ss_pred cccCCCCCCCCCCCEEeccCCCCCCC---CCCCCCCCCCCCCEEEcCCCCCccc-----ChhhhcC-CCcCeecccccc
Q 005207 389 ALMLPSLSGLRSLTKLDLSDCGLGEG---AIPSDIGNLHSLNELYLSKNNFVTL-----PASINSL-LNLKELEMEDCK 458 (709)
Q Consensus 389 ~~~lp~l~~l~~L~~L~Ls~n~l~~~---~~~~~l~~l~~L~~L~L~~n~l~~l-----p~~i~~l-~~L~~L~L~~c~ 458 (709)
...+ ....+.|+.|++++|.+++. .+...+..+++|+.+++++|.+..- ...+... +.|+.|++.+++
T Consensus 242 ~~~~--~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 242 ASAL--LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHH--hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 0000 11346788888888877521 1233455567888888888888732 3334444 678888877764
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.4e-16 Score=141.31 Aligned_cols=149 Identities=28% Similarity=0.361 Sum_probs=84.9
Q ss_pred CccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCc
Q 005207 67 KLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 145 (709)
+.+.|.+++|.++.+|+.+ .+.+|+.|++.+|+|+.+|..+..+++|+.|+++-|++...+..|+.+|.|+.|||..|
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn- 112 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN- 112 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc-
Confidence 4445555555555555555 55555555555555555555555555555555555554444445555555555555544
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCC-CcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKL-RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL 224 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~-~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l 224 (709)
.+. ..+|..|..|+.|+.|+++.|.+.-+|..++++++|+.|.+++|. +
T Consensus 113 -----------------------------nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-l 162 (264)
T KOG0617|consen 113 -----------------------------NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-L 162 (264)
T ss_pred -----------------------------ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-h
Confidence 222 345555666667777777777777777777777777777766643 3
Q ss_pred CcCcccccCCccCcEEeeeCCC
Q 005207 225 SSLPVAISSFQCLRNLKLSGCS 246 (709)
Q Consensus 225 ~~lp~~l~~l~~L~~L~Ls~~~ 246 (709)
-.+|..++.++.|++|.+.+|.
T Consensus 163 l~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 163 LSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhCcHHHHHHHHHHHHhcccce
Confidence 3455555555555555554443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=6.8e-16 Score=162.61 Aligned_cols=272 Identities=21% Similarity=0.156 Sum_probs=130.1
Q ss_pred EEeeCCCCC--CCCCcC-CcCCceEEEcccCCcc-----ccccccccccCCcEEEcCCCCCCCCC-------CCCCCCCC
Q 005207 71 LDWHRYPLK--SLPSNL-QLDKIVEFKMCYSRIE-----ELWKGIKHLNMLKVMKLSHSENLIKT-------PDFTEAPN 135 (709)
Q Consensus 71 L~l~~~~l~--~lp~~~-~l~~L~~L~Ls~n~i~-----~l~~~~~~l~~L~~L~Ls~~~~~~~~-------~~~~~l~~ 135 (709)
|++.++.++ ..+..+ .+.+|++|+++++.++ .++..+...++|+.++++++...... ..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 445555543 222222 4556777777777773 34555666677777777776543200 12444556
Q ss_pred ccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccC-CCCc
Q 005207 136 LEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHL-FGLV 214 (709)
Q Consensus 136 L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l-~~L~ 214 (709)
|+.|++++|......+..+..+.. . ++|++|++++|.+...... .+...+..+ ++|+
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~--~-~~L~~L~ls~~~~~~~~~~-------------------~l~~~l~~~~~~L~ 140 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLR--S-SSLQELKLNNNGLGDRGLR-------------------LLAKGLKDLPPALE 140 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhc--c-CcccEEEeeCCccchHHHH-------------------HHHHHHHhCCCCce
Confidence 666666665332222222222111 1 3355555555544311000 112223333 4444
Q ss_pred EEecCCCCCCC----cCcccccCCccCcEEeeeCCCCCCc----CchhhccCCCCCeeeccCccCc-----ccCcccCCC
Q 005207 215 QLTLNDCKNLS----SLPVAISSFQCLRNLKLSGCSKLKK----FPQIVTTMEDLSELNLDGTSIT-----EVPSSIELL 281 (709)
Q Consensus 215 ~L~L~~~~~l~----~lp~~l~~l~~L~~L~Ls~~~~~~~----~~~~~~~l~~L~~L~L~~~~i~-----~l~~~~~~l 281 (709)
.|++++|.... .++..+..+++|++|++++|.+... ++..+..+++|+.|++++|.+. .+...+..+
T Consensus 141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~ 220 (319)
T cd00116 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL 220 (319)
T ss_pred EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc
Confidence 44444444331 1222233344555555555544421 1222333445666666655554 123334555
Q ss_pred CCCCEEeccCCCCCcccccccc-----CCCCCCEEEeeCcCCCc----cCCccccCCCccceeeccccccccC-----Cc
Q 005207 282 PGLELLNLNDCKNFARVPSSIN-----GLKSLKTLNLSGCCKLE----NVPDTLGQVESLEELDISETAVRRP-----PS 347 (709)
Q Consensus 282 ~~L~~L~L~~~~~~~~l~~~~~-----~l~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~L~~n~i~~l-----~~ 347 (709)
++|++|++++|.+.......+. ..+.|+.|++++|.+.. .+...+..+++|+.+++++|.+..- ..
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 6666666666655432111111 23567777777766542 2233444556777777777776632 22
Q ss_pred ccccc-cCCcEEEccCCC
Q 005207 348 SVFLM-KNLRTLSFSGCN 364 (709)
Q Consensus 348 ~~~~l-~~L~~L~L~~~~ 364 (709)
.+... +.|++|++.++.
T Consensus 301 ~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 301 SLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHhhcCCchhhcccCCCC
Confidence 22223 567777766553
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=1.1e-15 Score=135.72 Aligned_cols=158 Identities=23% Similarity=0.358 Sum_probs=116.2
Q ss_pred hcCCCCcceEEecCcccc---CcccccCcCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCcEE
Q 005207 41 FSLMTNLGLLKINNVQLL---EGLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVM 116 (709)
Q Consensus 41 f~~l~~L~~L~l~~~~l~---~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 116 (709)
+-.|.++..|.+++|.++ .++..+ .+|+.|++.+|+++.+|..+ .+++|+.|++.-|++..+|.+|+.+|-|++|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l-~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAEL-KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHh-hhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 446788899999999976 345555 69999999999999999888 8999999999999999999999999999999
Q ss_pred EcCCCCCCCC--CCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceee
Q 005207 117 KLSHSENLIK--TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELL 194 (709)
Q Consensus 117 ~Ls~~~~~~~--~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~ 194 (709)
||++|.+... +..|-.+..|+.|+|+.| ....+|+.+++ +++|+.|.
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~------------------------------lt~lqil~ 156 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGK------------------------------LTNLQILS 156 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhh------------------------------hcceeEEe
Confidence 9999986543 235777888888888886 45555555554 44455555
Q ss_pred ccCCCccccCcccccCCCCcEEecCCCCCCCcCcccc
Q 005207 195 LDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAI 231 (709)
Q Consensus 195 l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l 231 (709)
+..|.+-++|..++.++.|++|.+.+|+ +..+|+.+
T Consensus 157 lrdndll~lpkeig~lt~lrelhiqgnr-l~vlppel 192 (264)
T KOG0617|consen 157 LRDNDLLSLPKEIGDLTRLRELHIQGNR-LTVLPPEL 192 (264)
T ss_pred eccCchhhCcHHHHHHHHHHHHhcccce-eeecChhh
Confidence 5555555555555555555555555532 33344333
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.33 E-value=1.5e-12 Score=150.74 Aligned_cols=201 Identities=25% Similarity=0.326 Sum_probs=118.9
Q ss_pred CCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEee
Q 005207 163 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 242 (709)
Q Consensus 163 l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 242 (709)
++.|++||+++|...+.+|..++.+-+|++|+++++.++.+|..++++..|.+|++..+..+..+|.....+++|++|.+
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 44555555555555566677777788899999999999999999999999999999998888888777777999999998
Q ss_pred eCCCCC--CcCchhhccCCCCCeeeccCccCcccCcccCCCCCCC----EEeccCCCCCccccccccCCCCCCEEEeeCc
Q 005207 243 SGCSKL--KKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLE----LLNLNDCKNFARVPSSINGLKSLKTLNLSGC 316 (709)
Q Consensus 243 s~~~~~--~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~----~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~ 316 (709)
...... ...-..+..+.+|+.+....... .+...+...++|. .+.+.+ ......+..+..+.+|+.|.+.+|
T Consensus 650 ~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 650 PRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDC 727 (889)
T ss_pred eccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcC
Confidence 775411 12223344555555555544333 1111122223332 222222 223344555667778888888887
Q ss_pred CCCccCCccccC------CCccceeeccccccccCCcccccccCCcEEEccCCCC
Q 005207 317 CKLENVPDTLGQ------VESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 317 ~~~~~~~~~l~~------l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~ 365 (709)
...+........ ++++..+.+.++.....+.+....++|+.|.+..|+.
T Consensus 728 ~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~ 782 (889)
T KOG4658|consen 728 GISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRL 782 (889)
T ss_pred CCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccc
Confidence 765443222111 2233333333333333333444455555555555553
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.13 E-value=3.9e-11 Score=139.17 Aligned_cols=147 Identities=24% Similarity=0.261 Sum_probs=105.6
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCcc--cc---Cc-ccccCcCccEEEeeCC-CCCCCCCcC-CcC
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQ--LL---EG-LEYLSNKLRLLDWHRY-PLKSLPSNL-QLD 88 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~--l~---~~-~~~l~~~L~~L~l~~~-~l~~lp~~~-~l~ 88 (709)
.+++.+++-.+ +. ..+. .+. ..++|++|-+..|. +. .+ +..+ +.|++||+++| .+..+|..+ .+-
T Consensus 523 ~~~rr~s~~~~-~~---~~~~-~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m-~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 523 NSVRRMSLMNN-KI---EHIA-GSS-ENPKLRTLLLQRNSDWLLEISGEFFRSL-PLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred hheeEEEEecc-ch---hhcc-CCC-CCCccceEEEeecchhhhhcCHHHHhhC-cceEEEECCCCCccCcCChHHhhhh
Confidence 56677777666 33 1221 222 23379999888874 22 22 4455 59999999976 589999988 799
Q ss_pred CceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCC-CCCCccEEeccCCccccccCcccccccccccCCCcc
Q 005207 89 KIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFT-EAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLK 167 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~-~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~ 167 (709)
+|++|+++++.|+.+|.++++++.|.+|++..+.....++.+. .+++|++|.+..-. .......+..++.+.+|+
T Consensus 596 ~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~----~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 596 HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA----LSNDKLLLKELENLEHLE 671 (889)
T ss_pred hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc----cccchhhHHhhhcccchh
Confidence 9999999999999999999999999999999988766666644 59999999997732 222333344555566666
Q ss_pred EEEccCC
Q 005207 168 ILILSGC 174 (709)
Q Consensus 168 ~L~Ls~~ 174 (709)
.+.....
T Consensus 672 ~ls~~~~ 678 (889)
T KOG4658|consen 672 NLSITIS 678 (889)
T ss_pred hheeecc
Confidence 6666443
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.4e-11 Score=125.35 Aligned_cols=206 Identities=25% Similarity=0.241 Sum_probs=127.4
Q ss_pred cCCccCcEEeeeCCCCCCcCc-hhhccCCCCCeeeccCccCcc---cCcccCCCCCCCEEeccCCCCCcccccc-ccCCC
Q 005207 232 SSFQCLRNLKLSGCSKLKKFP-QIVTTMEDLSELNLDGTSITE---VPSSIELLPGLELLNLNDCKNFARVPSS-INGLK 306 (709)
Q Consensus 232 ~~l~~L~~L~Ls~~~~~~~~~-~~~~~l~~L~~L~L~~~~i~~---l~~~~~~l~~L~~L~L~~~~~~~~l~~~-~~~l~ 306 (709)
.++.+|+.+.|.++....... .....+++++.|+|++|=+.. +......+|+|+.|+++.|++.....+. -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 345555555555544332211 345566666677776665542 2334566777777777776654322211 12466
Q ss_pred CCCEEEeeCcCCCc-cCCccccCCCccceeeccccc-cccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCc
Q 005207 307 SLKTLNLSGCCKLE-NVPDTLGQVESLEELDISETA-VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKS 384 (709)
Q Consensus 307 ~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~L~~n~-i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 384 (709)
.|+.|.+++|.+.. .+...+..+|+|+.|+|..|. +..-......+..|++|+|++|......
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~--------------- 262 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD--------------- 262 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc---------------
Confidence 77788888777653 233344567788888887774 3333333344677888888887744332
Q ss_pred cccccccCCCCCCCCCCCEEeccCCCCCCCCCCCC-----CCCCCCCCEEEcCCCCCcccCh--hhhcCCCcCeeccccc
Q 005207 385 SCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD-----IGNLHSLNELYLSKNNFVTLPA--SINSLLNLKELEMEDC 457 (709)
Q Consensus 385 ~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~-----l~~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L~L~~c 457 (709)
..+..+.++.|+.|+++.|.+.+-..|+. ...+++|+.|+++.|++...+. .+..+++|+.|.+..+
T Consensus 263 ------~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 263 ------QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ------cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 12336677888888888888876666655 5667899999999998876553 5566777777776655
Q ss_pred c
Q 005207 458 K 458 (709)
Q Consensus 458 ~ 458 (709)
+
T Consensus 337 ~ 337 (505)
T KOG3207|consen 337 Y 337 (505)
T ss_pred c
Confidence 4
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.03 E-value=3.5e-10 Score=122.80 Aligned_cols=181 Identities=24% Similarity=0.342 Sum_probs=104.8
Q ss_pred CcCCceEEEcccCCcccccccccccc-CCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCC
Q 005207 86 QLDKIVEFKMCYSRIEELWKGIKHLN-MLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVE 164 (709)
Q Consensus 86 ~l~~L~~L~Ls~n~i~~l~~~~~~l~-~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~ 164 (709)
....+..|++.+|.++.++.....+. +|+.|++++|++......+..+++|+.|++++| .+..++.
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~------------ 180 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPK------------ 180 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhh------------
Confidence 44455555555555555555444443 555555555554443334455555555555554 2333332
Q ss_pred CccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeC
Q 005207 165 SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSG 244 (709)
Q Consensus 165 ~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~ 244 (709)
..+..++|+.|++++|.+..+|..+.....|++|.+++|... ..+..+.++.++..+.+.+
T Consensus 181 ------------------~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~ 241 (394)
T COG4886 181 ------------------LLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSN 241 (394)
T ss_pred ------------------hhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCC
Confidence 222456666677777777777766666666777777765422 2333355666666666555
Q ss_pred CCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccc
Q 005207 245 CSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPS 300 (709)
Q Consensus 245 ~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~ 300 (709)
+.... .+..++.+++++.|++++|.++.++. ++.+.+++.|+++++......+.
T Consensus 242 n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 242 NKLED-LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ceeee-ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence 44332 25556666777777777777777766 67777777777777766555444
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=6.6e-11 Score=120.54 Aligned_cols=190 Identities=21% Similarity=0.200 Sum_probs=114.6
Q ss_pred cCCccCcEEeeeCCCCCCc--CchhhccCCCCCeeeccCccCcccCcc--cCCCCCCCEEeccCCCCCcc-ccccccCCC
Q 005207 232 SSFQCLRNLKLSGCSKLKK--FPQIVTTMEDLSELNLDGTSITEVPSS--IELLPGLELLNLNDCKNFAR-VPSSINGLK 306 (709)
Q Consensus 232 ~~l~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~l~~~--~~~l~~L~~L~L~~~~~~~~-l~~~~~~l~ 306 (709)
..+++++.|+|++|-+..- .......+|+|+.|+|+.|.+...-.+ -..++.|+.|.++.|.+... +......+|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 3355555555555433321 223445566666666666665532221 23466777777777766522 222344577
Q ss_pred CCCEEEeeCcCCCccCCccccCCCccceeeccccccccCC--cccccccCCcEEEccCCCCCCCCCccccccccccccCc
Q 005207 307 SLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP--SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKS 384 (709)
Q Consensus 307 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~--~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 384 (709)
+|+.|++.+|............+..|++|+|++|++...+ ...+.++.|+.|+++.|........
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~------------- 289 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEP------------- 289 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCC-------------
Confidence 7778888777543333333344667888888888887666 5566788888888887763321100
Q ss_pred cccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc
Q 005207 385 SCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV 437 (709)
Q Consensus 385 ~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 437 (709)
..........+++|+.|++..|++.+...-..+..+++|+.|.+..|.+.
T Consensus 290 ---d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 290 ---DVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ---CccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 00000113567899999999999865444556777888888888888776
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.96 E-value=4.5e-11 Score=118.66 Aligned_cols=240 Identities=25% Similarity=0.265 Sum_probs=144.3
Q ss_pred hhhcCCCCcceEEecCccccC--------cccccCcCccEEEeeCCCC----CCCCCcCCcCCceEEEcccCCccccccc
Q 005207 39 KAFSLMTNLGLLKINNVQLLE--------GLEYLSNKLRLLDWHRYPL----KSLPSNLQLDKIVEFKMCYSRIEELWKG 106 (709)
Q Consensus 39 ~~f~~l~~L~~L~l~~~~l~~--------~~~~l~~~L~~L~l~~~~l----~~lp~~~~l~~L~~L~Ls~n~i~~l~~~ 106 (709)
.....+..+..+++++|.+.. .+... ++||..+|+.--. ..+|... ..+.++
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~-~~L~~v~~sd~ftGR~~~Ei~e~L---------------~~l~~a 87 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASK-KELREVNLSDMFTGRLKDEIPEAL---------------KMLSKA 87 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhc-ccceeeehHhhhcCCcHHHHHHHH---------------HHHHHH
Confidence 455667778888888887652 22233 2555555543211 1122111 112234
Q ss_pred cccccCCcEEEcCCCCCCCCC-C----CCCCCCCccEEeccCCccccccCcccc-------cccccccCCCccEEEccCC
Q 005207 107 IKHLNMLKVMKLSHSENLIKT-P----DFTEAPNLEELYLEGCTKLRKVHPSLL-------LHNKLIFVESLKILILSGC 174 (709)
Q Consensus 107 ~~~l~~L~~L~Ls~~~~~~~~-~----~~~~l~~L~~L~L~~~~~l~~~~~~i~-------~l~~L~~l~~L~~L~Ls~~ 174 (709)
+..+++|++|+||.|.+.... + -++++..|++|.|.+|..-..-..-++ ..++...-+.|+++....|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 556667777777777664432 2 256788888888888842111111111 2233344578999999888
Q ss_pred CCCCc----CCccccCCCccceeeccCCCcc-----ccCcccccCCCCcEEecCCCCCCCc----CcccccCCccCcEEe
Q 005207 175 LKLRK----FPHVVGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCKNLSS----LPVAISSFQCLRNLK 241 (709)
Q Consensus 175 ~~~~~----~~~~l~~l~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~ 241 (709)
++... +...+...+.|+.+.+..|.|. .+-..+.++++|+.|||++|..... +...+..+++|++|+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 77643 4456777789999999988876 3445678888999999988776532 334456678888888
Q ss_pred eeCCCCCCcCchhh-----ccCCCCCeeeccCccCcc-----cCcccCCCCCCCEEeccCCCC
Q 005207 242 LSGCSKLKKFPQIV-----TTMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKN 294 (709)
Q Consensus 242 Ls~~~~~~~~~~~~-----~~l~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~L~~~~~ 294 (709)
+++|.+...-...+ ...|+|+.|.+.+|.|+. +...+...+.|+.|++++|.+
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 88887765443322 345677777777777661 222234455566666666554
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=1.6e-10 Score=111.90 Aligned_cols=131 Identities=30% Similarity=0.370 Sum_probs=72.2
Q ss_pred CCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecc
Q 005207 259 EDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDIS 338 (709)
Q Consensus 259 ~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 338 (709)
..|++++|++|.|+.+..+..-.|+++.|+++.|.+... +.+..+++|+.|||+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--------------------------~nLa~L~~L~~LDLS 337 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--------------------------QNLAELPQLQLLDLS 337 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeee--------------------------hhhhhcccceEeecc
Confidence 456667777777776666666666666666666554321 124455666677777
Q ss_pred ccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCC
Q 005207 339 ETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPS 418 (709)
Q Consensus 339 ~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~ 418 (709)
+|.++.+..+-..+-+.++|.+++|..- .+..++.+.+|..||+++|++.+-.--.
T Consensus 338 ~N~Ls~~~Gwh~KLGNIKtL~La~N~iE------------------------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~ 393 (490)
T KOG1259|consen 338 GNLLAECVGWHLKLGNIKTLKLAQNKIE------------------------TLSGLRKLYSLVNLDLSSNQIEELDEVN 393 (490)
T ss_pred cchhHhhhhhHhhhcCEeeeehhhhhHh------------------------hhhhhHhhhhheeccccccchhhHHHhc
Confidence 7766666666666667777777666521 1222444455555555555553222223
Q ss_pred CCCCCCCCCEEEcCCCCCccc
Q 005207 419 DIGNLHSLNELYLSKNNFVTL 439 (709)
Q Consensus 419 ~l~~l~~L~~L~L~~n~l~~l 439 (709)
.++++|.|+.+.|.+|.+..+
T Consensus 394 ~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 394 HIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ccccccHHHHHhhcCCCcccc
Confidence 444444444444444444433
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.94 E-value=1.3e-09 Score=118.47 Aligned_cols=197 Identities=27% Similarity=0.362 Sum_probs=154.9
Q ss_pred eEEecCccccCcccccC--cCccEEEeeCCCCCCCCCcCCcC--CceEEEcccCCccccccccccccCCcEEEcCCCCCC
Q 005207 49 LLKINNVQLLEGLEYLS--NKLRLLDWHRYPLKSLPSNLQLD--KIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENL 124 (709)
Q Consensus 49 ~L~l~~~~l~~~~~~l~--~~L~~L~l~~~~l~~lp~~~~l~--~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~ 124 (709)
.++...+.+......+. +.++.|++.+++++.+|...... +|++|++++|++..++..+..+++|+.|++++|++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 47777777743332222 47999999999999999988543 899999999999999988999999999999999977
Q ss_pred CCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccC
Q 005207 125 IKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP 204 (709)
Q Consensus 125 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp 204 (709)
...+..+..++|+.|++++| .+..+|..+.. ...|+++.+++|. ....+..+.++.++..+.+.++.+..++
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~------~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~ 248 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGN-KISDLPPEIEL------LSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLP 248 (394)
T ss_pred hhhhhhhhhhhhhheeccCC-ccccCchhhhh------hhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeecc
Confidence 76666668999999999997 67777765532 3458888888886 3334566777888888888888888888
Q ss_pred cccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhh
Q 005207 205 LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIV 255 (709)
Q Consensus 205 ~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~ 255 (709)
..++.+++++.|++++|. +..++. ++.+.+|+.|+++++......+...
T Consensus 249 ~~~~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred chhccccccceecccccc-cccccc-ccccCccCEEeccCccccccchhhh
Confidence 888888889999998855 444554 7778889999998887776655443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=4.7e-10 Score=104.75 Aligned_cols=77 Identities=29% Similarity=0.424 Sum_probs=14.3
Q ss_pred CccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCC-CCCCCccEEeccCC
Q 005207 67 KLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDF-TEAPNLEELYLEGC 144 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~-~~l~~L~~L~L~~~ 144 (709)
++|.|++++|.++.+..-. .+.+|+.|+|++|+|+.+ +++..+++|+.|++++|++....+.+ ..+++|++|++++|
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence 3444444444444443222 234444444444444444 23444444444444444443322222 13444444444443
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.90 E-value=1.7e-09 Score=101.13 Aligned_cols=122 Identities=19% Similarity=0.191 Sum_probs=33.6
Q ss_pred eeCCCCCCCCCcCCcCCceEEEcccCCccccccccc-cccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccC
Q 005207 73 WHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIK-HLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVH 151 (709)
Q Consensus 73 l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~-~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 151 (709)
+..+-++..|...++.++++|+|++|.|+.+. .+. .+.+|+.|+|++|.+.. ++.+..+++|++|++++| .+..+.
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~~l~~L~~L~~L~L~~N-~I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITK-LEGLPGLPRLKTLDLSNN-RISSIS 80 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S-C
T ss_pred cccccccccccccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcc-ccCccChhhhhhcccCCC-CCCccc
Confidence 34455666777668888999999999999884 454 68889999999998654 456788888888888887 444443
Q ss_pred cccccccccccCCCccEEEccCCCCCCc-CCccccCCCccceeeccCCCccc
Q 005207 152 PSLLLHNKLIFVESLKILILSGCLKLRK-FPHVVGSMECLQELLLDGTDIKE 202 (709)
Q Consensus 152 ~~i~~l~~L~~l~~L~~L~Ls~~~~~~~-~~~~l~~l~~L~~L~l~~~~i~~ 202 (709)
..+. ..+++|+.|++++|.+... --..++.+++|+.|++.+|.+..
T Consensus 81 ~~l~-----~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 81 EGLD-----KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp HHHH-----HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred cchH-----HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 2221 1256667777776665431 12344555666666666666553
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.90 E-value=6.2e-11 Score=124.32 Aligned_cols=187 Identities=22% Similarity=0.272 Sum_probs=98.6
Q ss_pred EeeCCCCCCCCCcC---CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCcccc
Q 005207 72 DWHRYPLKSLPSNL---QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLR 148 (709)
Q Consensus 72 ~l~~~~l~~lp~~~---~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~ 148 (709)
.|++-.++.+|..- .+..-+..||+.|++..+|..+..+..|..+.|..|.+-..++.+..+..|..|+|+.| .+.
T Consensus 56 ~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS 134 (722)
T KOG0532|consen 56 LLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLS 134 (722)
T ss_pred ccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhh
Confidence 34444444444322 45555666777777777776666666677777777666666666666666677777665 455
Q ss_pred ccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCc
Q 005207 149 KVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLP 228 (709)
Q Consensus 149 ~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp 228 (709)
.+|..+..+ -|+.|-+++|++ +.+|+.++....|..|+.+.|.+..+|+.++++.+|+.|++..|. +..+|
T Consensus 135 ~lp~~lC~l-------pLkvli~sNNkl-~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp 205 (722)
T KOG0532|consen 135 HLPDGLCDL-------PLKVLIVSNNKL-TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLP 205 (722)
T ss_pred cCChhhhcC-------cceeEEEecCcc-ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCC
Confidence 555544433 133333333322 223333344444555555555555555555555555555554432 22333
Q ss_pred ccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCC
Q 005207 229 VAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCK 293 (709)
Q Consensus 229 ~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~ 293 (709)
..+. .++ |..||++.|++..+|..|..++.|++|-|.+|.
T Consensus 206 ~El~------------------------~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 206 EELC------------------------SLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HHHh------------------------CCc-eeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 3333 222 445555555555555555555555555555554
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.81 E-value=2.7e-10 Score=113.23 Aligned_cols=248 Identities=19% Similarity=0.194 Sum_probs=147.3
Q ss_pred cccccCCcEEEcCCCCCCCCC-----CCCCCCCCccEEeccCCc---cccccCcccccc-cccccCCCccEEEccCCCCC
Q 005207 107 IKHLNMLKVMKLSHSENLIKT-----PDFTEAPNLEELYLEGCT---KLRKVHPSLLLH-NKLIFVESLKILILSGCLKL 177 (709)
Q Consensus 107 ~~~l~~L~~L~Ls~~~~~~~~-----~~~~~l~~L~~L~L~~~~---~l~~~~~~i~~l-~~L~~l~~L~~L~Ls~~~~~ 177 (709)
...+..++.|+|++|.+.... +.+.+.++|+..++++-- ...++|+.+..+ +.|...++|++|+||+|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 456677788888888765542 246666777777776521 112344333222 23444456777777776655
Q ss_pred CcCC----ccccCCCccceeeccCCCccccCcc-cccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCc--
Q 005207 178 RKFP----HVVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKK-- 250 (709)
Q Consensus 178 ~~~~----~~l~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~-- 250 (709)
...+ +.+.++..|++|.+.+|++...-.. ++. .|..|. . ......-+.|+++...+|.....
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~-------~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--V-------NKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--H-------HhccCCCcceEEEEeeccccccccH
Confidence 4333 2344556666666666665421100 000 000000 0 01133456777777777665432
Q ss_pred --CchhhccCCCCCeeeccCccCcc-----cCcccCCCCCCCEEeccCCCCCcc----ccccccCCCCCCEEEeeCcCCC
Q 005207 251 --FPQIVTTMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKNFAR----VPSSINGLKSLKTLNLSGCCKL 319 (709)
Q Consensus 251 --~~~~~~~l~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~L~~~~~~~~----l~~~~~~l~~L~~L~L~~~~~~ 319 (709)
+...+...+.|+.+.+..|.|.. +...+..++.|+.|+|++|.+... +...+..+++|+.|++++|...
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 33456667788888888887762 234577888888888888876532 3345666788888888888765
Q ss_pred ccCCc----cc-cCCCccceeeccccccc-----cCCcccccccCCcEEEccCCCC
Q 005207 320 ENVPD----TL-GQVESLEELDISETAVR-----RPPSSVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 320 ~~~~~----~l-~~l~~L~~L~L~~n~i~-----~l~~~~~~l~~L~~L~L~~~~~ 365 (709)
..-.. .+ ...|+|+.|.+.+|.|+ .+...+...+.|..|+|++|+.
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 43221 11 23688999999999887 2333445588899999999984
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=1.1e-09 Score=106.26 Aligned_cols=199 Identities=23% Similarity=0.268 Sum_probs=108.4
Q ss_pred cccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccC-CCCCccccccccCCCCC
Q 005207 230 AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLND-CKNFARVPSSINGLKSL 308 (709)
Q Consensus 230 ~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~-~~~~~~l~~~~~~l~~L 308 (709)
.+.-+++|+.+.++.|.-... -.....-|.|+++...+..+...|..+. ...+....-.. ....+..-..+..++.|
T Consensus 209 ~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~~~l~p-e~~~~D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDVPSLLP-ETILADPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred chHHhhhhheeeeeccchhhe-eceeecCchhheeeeecccccccccccc-hhhhcCccCCCCCccCCceEEecchHhhh
Confidence 344456666666666543221 1122233556666666665554332110 01111110000 01112222233445667
Q ss_pred CEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccc
Q 005207 309 KTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLV 388 (709)
Q Consensus 309 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (709)
+++++++|.+. .+-+.+.-.|.++.|+++.|.|..+.. +..+++|+.|++++|..... ..|
T Consensus 287 telDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~-~Gw---------------- 347 (490)
T KOG1259|consen 287 TELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAEC-VGW---------------- 347 (490)
T ss_pred hhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhh-hhh----------------
Confidence 77777776543 233445556777777777777776654 66677777777777662211 111
Q ss_pred cccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccCh--hhhcCCCcCeecccccc
Q 005207 389 ALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA--SINSLLNLKELEMEDCK 458 (709)
Q Consensus 389 ~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L~L~~c~ 458 (709)
-..+-+++.|.|++|.+. -.+.++.+-+|..||+++|+|..+.+ .|+++|.|+.|.+.+|+
T Consensus 348 ------h~KLGNIKtL~La~N~iE---~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 348 ------HLKLGNIKTLKLAQNKIE---TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ------HhhhcCEeeeehhhhhHh---hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 113446677777777663 33456667777788888887775543 67777778887777776
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.75 E-value=1.9e-10 Score=120.65 Aligned_cols=190 Identities=26% Similarity=0.375 Sum_probs=121.4
Q ss_pred cEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcC
Q 005207 238 RNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCC 317 (709)
Q Consensus 238 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~ 317 (709)
...+++.|.+ ..+|..+..+..|+.+.|..|.+..+|..+.++..|..|+++.|++ ..+|..++.|+ |+.|.+++|
T Consensus 78 ~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sNN- 153 (722)
T KOG0532|consen 78 VFADLSRNRF-SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSNN- 153 (722)
T ss_pred hhhhcccccc-ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEecC-
Confidence 4456666543 3456666677777778888888888888888888888888887764 34565555554 677777664
Q ss_pred CCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCC
Q 005207 318 KLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSG 397 (709)
Q Consensus 318 ~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~ 397 (709)
.++.+|..++..+.|..|+.+.|.+..+|+.++.+.+|+.|.+..|...... +.+.
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp-----------------------~El~- 209 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLP-----------------------EELC- 209 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCC-----------------------HHHh-
Confidence 3455666666677777777777777777777777777777777766632111 1122
Q ss_pred CCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhh---hcCCCcCeeccccc
Q 005207 398 LRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI---NSLLNLKELEMEDC 457 (709)
Q Consensus 398 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i---~~l~~L~~L~L~~c 457 (709)
.-.|..||+|.|++. .+|-.|..+..|++|.|.+|.+.+=|..| +...--++|++.-|
T Consensus 210 ~LpLi~lDfScNkis--~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 210 SLPLIRLDFSCNKIS--YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCceeeeecccCcee--ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 224666666666663 36666666666666666666666665544 23444555555555
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.61 E-value=4.9e-09 Score=114.12 Aligned_cols=196 Identities=23% Similarity=0.189 Sum_probs=88.9
Q ss_pred cCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCc
Q 005207 87 LDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESL 166 (709)
Q Consensus 87 l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L 166 (709)
+..+..++++.|.|..+-..+..+++|..|++.+|++......+..+++|++|++++| . |..+..+..++.|
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~-------I~~i~~l~~l~~L 142 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-K-------ITKLEGLSTLTLL 142 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-c-------cccccchhhccch
Confidence 3444444455555554333344555555555555543332222455555555555554 1 2222233334445
Q ss_pred cEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcc-cccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCC
Q 005207 167 KILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGC 245 (709)
Q Consensus 167 ~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~ 245 (709)
+.|++++|.+... ..+..++.|+.+++++|.+..+... ...+.+++.+.+.++.....-. +..+..+..+++..|
T Consensus 143 ~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 143 KELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDN 218 (414)
T ss_pred hhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccc
Confidence 5555555544321 1222255555566666655554433 3455555555555543222111 222233333344444
Q ss_pred CCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCC
Q 005207 246 SKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKN 294 (709)
Q Consensus 246 ~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~ 294 (709)
.+...-+.....+..|+.+++++|.+..++..+..++.+..|++.+++.
T Consensus 219 ~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 219 KISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred cceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhccc
Confidence 3332211110000125666666666666655555566666666665543
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.50 E-value=2.6e-09 Score=108.59 Aligned_cols=158 Identities=23% Similarity=0.272 Sum_probs=76.5
Q ss_pred ccCCCCcEEecCCCCCCCc--CcccccCCccCcEEeeeCCCCCCc--CchhhccCCCCCeeeccCc-cCcccC--cccCC
Q 005207 208 EHLFGLVQLTLNDCKNLSS--LPVAISSFQCLRNLKLSGCSKLKK--FPQIVTTMEDLSELNLDGT-SITEVP--SSIEL 280 (709)
Q Consensus 208 ~~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~L~~~-~i~~l~--~~~~~ 280 (709)
..+++|++|+++.|..+.. +-.-..++..++.+.+.||.-.+. +-..-+.+..+.++++..+ .+++.. ..-..
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 3455566666666554432 111234455566665556543322 1111223334445554444 222211 11234
Q ss_pred CCCCCEEeccCCCCCcccc--ccccCCCCCCEEEeeCcCCCccCCc--cccCCCccceeeccccccc---cCCccccccc
Q 005207 281 LPGLELLNLNDCKNFARVP--SSINGLKSLKTLNLSGCCKLENVPD--TLGQVESLEELDISETAVR---RPPSSVFLMK 353 (709)
Q Consensus 281 l~~L~~L~L~~~~~~~~l~--~~~~~l~~L~~L~L~~~~~~~~~~~--~l~~l~~L~~L~L~~n~i~---~l~~~~~~l~ 353 (709)
+..|+.|..++|...+..+ .-..+.++|+.|.+++|........ .-.+.+.|+.+++.++... .+.....+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 6677777777776543322 1234567788888888776443211 1134556666666665433 1222233455
Q ss_pred CCcEEEccCCCC
Q 005207 354 NLRTLSFSGCNG 365 (709)
Q Consensus 354 ~L~~L~L~~~~~ 365 (709)
.|+.|.++.|..
T Consensus 373 ~lr~lslshce~ 384 (483)
T KOG4341|consen 373 RLRVLSLSHCEL 384 (483)
T ss_pred hhccCChhhhhh
Confidence 555555555543
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.48 E-value=2.8e-08 Score=108.21 Aligned_cols=213 Identities=27% Similarity=0.304 Sum_probs=121.7
Q ss_pred CccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCc
Q 005207 67 KLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 145 (709)
.++.+.+..|.+..+-... .+.+|..|++.+|+|+.+...+..+++|++|++++|.+. .+..+..++.|+.|++.+|.
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKELNLSGNL 151 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccc-cccchhhccchhhheeccCc
Confidence 4444445555554422222 556666666666666666544566666666666666543 23345555556667776652
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCC-ccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP-HVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL 224 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~-~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l 224 (709)
+ .....+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+..+. .+..+..+..+++..+...
T Consensus 152 -i-------~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 152 -I-------SDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred -c-------hhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccce
Confidence 2 222333446667777777766654433 3 566778888888888877544 2223333333455554433
Q ss_pred CcCcccccCCcc--CcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCC
Q 005207 225 SSLPVAISSFQC--LRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKN 294 (709)
Q Consensus 225 ~~lp~~l~~l~~--L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~ 294 (709)
..-+ +..+.. |+.++++++.+.... ..+..+.++..|++..+.+..+.. +...+.+..+....+..
T Consensus 222 ~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 222 KLEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKL 289 (414)
T ss_pred eccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccccc-ccccchHHHhccCcchh
Confidence 2221 222333 888888887765432 455667788888988888875533 34445555555555543
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.47 E-value=7.2e-07 Score=93.48 Aligned_cols=62 Identities=23% Similarity=0.502 Sum_probs=39.9
Q ss_pred cCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCC
Q 005207 257 TMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP 323 (709)
Q Consensus 257 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~ 323 (709)
.+.+++.|++++|.++.+|. -.++|+.|.+++|..+..+|..+ .++|++|++++|..+..+|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 35667777777777777762 23467777777777766666544 2467777777765554444
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.40 E-value=5.9e-07 Score=102.48 Aligned_cols=108 Identities=27% Similarity=0.404 Sum_probs=95.6
Q ss_pred cCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCc-ccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEee
Q 005207 236 CLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLS 314 (709)
Q Consensus 236 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~ 314 (709)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999999899999999999999999999998 788889999999999999999999999999999999999999
Q ss_pred CcCCCccCCccccCC-Cccceeeccccccc
Q 005207 315 GCCKLENVPDTLGQV-ESLEELDISETAVR 343 (709)
Q Consensus 315 ~~~~~~~~~~~l~~l-~~L~~L~L~~n~i~ 343 (709)
+|.+.+.+|..++.. .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 999999999887664 46778888888644
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=1.2e-07 Score=92.49 Aligned_cols=232 Identities=21% Similarity=0.233 Sum_probs=148.0
Q ss_pred CccCcEEeeeCCCCCCc--CchhhccCCCCCeeeccCccCc---ccCcccCCCCCCCEEeccCCCCCccccccccCCCCC
Q 005207 234 FQCLRNLKLSGCSKLKK--FPQIVTTMEDLSELNLDGTSIT---EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSL 308 (709)
Q Consensus 234 l~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~L~~~~i~---~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L 308 (709)
...++.|.+.+|.+... ....-.....++.++|.+|.|+ ++...+.++|.|+.|+++.|.+...+...-..+.+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 33445555666555432 2233345677888888888887 455567888888888888877543322211345688
Q ss_pred CEEEeeCcCCCc-cCCccccCCCccceeeccccccccCCc---cccc-ccCCcEEEccCCCCCCCCCccccccccccccC
Q 005207 309 KTLNLSGCCKLE-NVPDTLGQVESLEELDISETAVRRPPS---SVFL-MKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 383 (709)
Q Consensus 309 ~~L~L~~~~~~~-~~~~~l~~l~~L~~L~L~~n~i~~l~~---~~~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 383 (709)
++|.|.|....- .....+..+|.+++|+++.|+..++-. .+.. -+.+++|+..+|...- |.
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~----w~---------- 189 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL----WL---------- 189 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH----HH----------
Confidence 888888755432 233455677888888888886653311 1111 2355566665554110 00
Q ss_pred ccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccC--hhhhcCCCcCeeccccccccc
Q 005207 384 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLP--ASINSLLNLKELEMEDCKRLQ 461 (709)
Q Consensus 384 ~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~ 461 (709)
..+.. -.-+|++..+-+..|.+.+.........++.+..|+|+.++|.+.. +.+.+++.|..|.+++++...
T Consensus 190 ~~~~l------~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 190 NKNKL------SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HHHhH------HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 00000 2235788888888998866666677788899999999999998554 367899999999999999877
Q ss_pred cCCCCCCCccEEEecCCCCcceecCc
Q 005207 462 FLPQLPPNIIFVKVNGCSSLVTLLGA 487 (709)
Q Consensus 462 ~lp~lp~sL~~L~i~~C~~L~~l~~~ 487 (709)
.+.. ..=+.|-|...++++.+.++
T Consensus 264 ~l~~--~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 264 PLRG--GERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cccC--CcceEEEEeeccceEEecCc
Confidence 6654 23345666677777766544
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.8e-09 Score=102.63 Aligned_cols=105 Identities=24% Similarity=0.271 Sum_probs=70.8
Q ss_pred CCCeeeccCccCc--ccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCC--ccccCCCcccee
Q 005207 260 DLSELNLDGTSIT--EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP--DTLGQVESLEEL 335 (709)
Q Consensus 260 ~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~--~~l~~l~~L~~L 335 (709)
.|++|||++..|+ .+...+..+.+|+.|.+.++++...+-..+..-.+|+.|++++|+...... -.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4777777777776 344456777888888888887777666677777888888888887665432 235667778888
Q ss_pred ecccccccc-CCc-cccc-ccCCcEEEccCCC
Q 005207 336 DISETAVRR-PPS-SVFL-MKNLRTLSFSGCN 364 (709)
Q Consensus 336 ~L~~n~i~~-l~~-~~~~-l~~L~~L~L~~~~ 364 (709)
+++.|.+.. ... .+.+ -++|+.|+++|+.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 887776652 111 1111 4567777777775
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.35 E-value=8.7e-07 Score=101.10 Aligned_cols=109 Identities=25% Similarity=0.336 Sum_probs=89.8
Q ss_pred ccceeeccCCCcc-ccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeecc
Q 005207 189 CLQELLLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLD 267 (709)
Q Consensus 189 ~L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~ 267 (709)
.++.|+|+++.+. .+|..+..+++|+.|+|++|...+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778888888887 788888888999999999888878888888889999999999998888888888999999999999
Q ss_pred CccCc-ccCcccCC-CCCCCEEeccCCCCCcc
Q 005207 268 GTSIT-EVPSSIEL-LPGLELLNLNDCKNFAR 297 (709)
Q Consensus 268 ~~~i~-~l~~~~~~-l~~L~~L~L~~~~~~~~ 297 (709)
+|.+. .+|..++. ..++..+++.+|..+..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC
Confidence 99888 67776654 34677888888765443
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.34 E-value=1.3e-06 Score=91.58 Aligned_cols=159 Identities=19% Similarity=0.286 Sum_probs=99.8
Q ss_pred ccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccc-ccccCCcccccccCCcEEEccCCCCCCCCCcccccccccc
Q 005207 302 INGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET-AVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNL 380 (709)
Q Consensus 302 ~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n-~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 380 (709)
+..+++++.|++++| .+..+|. -.++|++|.++++ .++.+|..+ +++|++|.+++|..+..
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s------------ 109 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG------------ 109 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc------------
Confidence 445688999999998 5555662 2357999999874 455666544 46899999998853221
Q ss_pred ccCccccccccCCCCCCCCCCCEEeccCCCCCC-CCCCCCCCCCCCCCEEEcCCCCCc---ccChhhhcC-CCcCeeccc
Q 005207 381 MGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGE-GAIPSDIGNLHSLNELYLSKNNFV---TLPASINSL-LNLKELEME 455 (709)
Q Consensus 381 ~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~-~~~~~~l~~l~~L~~L~L~~n~l~---~lp~~i~~l-~~L~~L~L~ 455 (709)
+| ++|+.|+++++.... ..+| ++|+.|.+.+++.. .+| ..+ ++|+.|+++
T Consensus 110 -----------LP-----~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is 164 (426)
T PRK15386 110 -----------LP-----ESVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARID---NLISPSLKTLSLT 164 (426)
T ss_pred -----------cc-----cccceEEeCCCCCcccccCc------chHhheeccccccccccccc---cccCCcccEEEec
Confidence 11 367888887655421 1222 46778887654321 222 123 579999999
Q ss_pred cccccccCCCCCCCccEEEecCCC--CcceecCccccccccCcccccccchh
Q 005207 456 DCKRLQFLPQLPPNIIFVKVNGCS--SLVTLLGALKLCKSNGIVIECIDSLK 505 (709)
Q Consensus 456 ~c~~L~~lp~lp~sL~~L~i~~C~--~L~~l~~~~~~~~l~~l~~~~c~~L~ 505 (709)
+|..+..-+.+|.+|+.|.+..+. +++.. ...-+..+ .+.|.+|.++.
T Consensus 165 ~c~~i~LP~~LP~SLk~L~ls~n~~~sLeI~-~~sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 165 GCSNIILPEKLPESLQSITLHIEQKTTWNIS-FEGFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred CCCcccCcccccccCcEEEecccccccccCc-cccccccc-EechhhhcccC
Confidence 998776444599999999987643 33322 11222333 57777776654
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.5e-08 Score=98.51 Aligned_cols=177 Identities=25% Similarity=0.298 Sum_probs=99.8
Q ss_pred CccceeeccCCCcc--ccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCc--hhhccCCCCCe
Q 005207 188 ECLQELLLDGTDIK--ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFP--QIVTTMEDLSE 263 (709)
Q Consensus 188 ~~L~~L~l~~~~i~--~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~--~~~~~l~~L~~ 263 (709)
..|++||++...|+ .+-.-+..|.+|+.|.+.+...-..+...+.+-.+|+.|+++.|+-..... -.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35777788777776 444455667777777777766555555556666777777777766544322 23455556666
Q ss_pred eeccCccCcc--cCcccC-CCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCc---cCCccccCCCccceeec
Q 005207 264 LNLDGTSITE--VPSSIE-LLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE---NVPDTLGQVESLEELDI 337 (709)
Q Consensus 264 L~L~~~~i~~--l~~~~~-~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~---~~~~~l~~l~~L~~L~L 337 (709)
|+|+.|.+.. +...+. --+ +|+.|+++||...- .+..-...+++|.+|||
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise------------------------~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISE------------------------TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDL 320 (419)
T ss_pred cCchHhhccchhhhHHHhhhch------------------------hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecc
Confidence 6666554431 111111 113 44444444443211 11112234566666666
Q ss_pred cccccc--cCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCC
Q 005207 338 SETAVR--RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDC 409 (709)
Q Consensus 338 ~~n~i~--~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n 409 (709)
++|... .....+..++.|++|+++.|....... +-.+...|+|.+|++-+|
T Consensus 321 SD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~---------------------~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 321 SDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPET---------------------LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccccCchHHHHHHhcchheeeehhhhcCCChHH---------------------eeeeccCcceEEEEeccc
Confidence 665432 334456778889999999988543321 112556677777777665
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.27 E-value=7.5e-07 Score=68.21 Aligned_cols=56 Identities=21% Similarity=0.358 Sum_probs=25.9
Q ss_pred CceEEEcccCCccccc-cccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCC
Q 005207 89 KIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGC 144 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~ 144 (709)
+|++|++++|+|+.++ ..|..+++|++|++++|++....+ .|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444444444 234444444444444444433332 2445555555555544
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.26 E-value=3e-08 Score=100.95 Aligned_cols=236 Identities=24% Similarity=0.323 Sum_probs=111.4
Q ss_pred cCCCccceeeccCCC-cc--ccCcccccCCCCcEEecCCCCCCCcCcc--cccCCccCcEEeeeCCCCCCc--Cchhhcc
Q 005207 185 GSMECLQELLLDGTD-IK--ELPLSIEHLFGLVQLTLNDCKNLSSLPV--AISSFQCLRNLKLSGCSKLKK--FPQIVTT 257 (709)
Q Consensus 185 ~~l~~L~~L~l~~~~-i~--~lp~~l~~l~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~Ls~~~~~~~--~~~~~~~ 257 (709)
.+++++++|.+.++. ++ .+-..-..+.+|+.|++..|..+....- -..++++|++|++++|..... ......+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 445555666555543 21 1112234566777777777665543221 124567777777777765432 2223334
Q ss_pred CCCCCeeeccCccCcc---cCcccCCCCCCCEEeccCCCCCccccc--cccCCCCCCEEEeeCcCCCccCCccccCCCcc
Q 005207 258 MEDLSELNLDGTSITE---VPSSIELLPGLELLNLNDCKNFARVPS--SINGLKSLKTLNLSGCCKLENVPDTLGQVESL 332 (709)
Q Consensus 258 l~~L~~L~L~~~~i~~---l~~~~~~l~~L~~L~L~~~~~~~~l~~--~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L 332 (709)
+..++.+.+.+|.-.+ +...-.....+..+++..|..+....- .-..+..|+.|+.++|...+..+
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~--------- 311 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV--------- 311 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH---------
Confidence 4445555444432111 111122333344444444432221110 01223444444444443322111
Q ss_pred ceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCC
Q 005207 333 EELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLG 412 (709)
Q Consensus 333 ~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~ 412 (709)
+..-..+.++|+.|.+++|+.........+ -.+++.|+.+++..|...
T Consensus 312 ------------l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l--------------------~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 312 ------------LWALGQHCHNLQVLELSGCQQFSDRGFTML--------------------GRNCPHLERLDLEECGLI 359 (483)
T ss_pred ------------HHHHhcCCCceEEEeccccchhhhhhhhhh--------------------hcCChhhhhhccccccee
Confidence 011112356777777777764332211110 235566777777776543
Q ss_pred CCC-CCCCCCCCCCCCEEEcCCCCCc------ccChhhhcCCCcCeeccccccccc
Q 005207 413 EGA-IPSDIGNLHSLNELYLSKNNFV------TLPASINSLLNLKELEMEDCKRLQ 461 (709)
Q Consensus 413 ~~~-~~~~l~~l~~L~~L~L~~n~l~------~lp~~i~~l~~L~~L~L~~c~~L~ 461 (709)
.+. +...-.+++.|++|.+++|... .+..+-..+..|+.+.+++|+.+.
T Consensus 360 ~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 360 TDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 222 3344456677777777766432 122333456667777777776543
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=2e-06 Score=65.88 Aligned_cols=57 Identities=33% Similarity=0.542 Sum_probs=31.1
Q ss_pred CCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCc
Q 005207 260 DLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGC 316 (709)
Q Consensus 260 ~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~ 316 (709)
+|++|++++|+++.+|. .|..+++|++|++++|.+....+..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45566666666665553 3455555555555555554444445555555555555554
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.14 E-value=1.3e-08 Score=109.82 Aligned_cols=100 Identities=25% Similarity=0.265 Sum_probs=52.5
Q ss_pred CCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccc
Q 005207 260 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISE 339 (709)
Q Consensus 260 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 339 (709)
.|...+.+.|++..+..++.-++.|+.|+|++|+....- .+..|+.|++|+|+.|......--....+. |+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 355666677777777777777777777777777654332 445555666666665543322111111222 55555555
Q ss_pred cccccCCcccccccCCcEEEccCC
Q 005207 340 TAVRRPPSSVFLMKNLRTLSFSGC 363 (709)
Q Consensus 340 n~i~~l~~~~~~l~~L~~L~L~~~ 363 (709)
|.++.+- .+.++.+|+.||+++|
T Consensus 242 N~l~tL~-gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 242 NALTTLR-GIENLKSLYGLDLSYN 264 (1096)
T ss_pred cHHHhhh-hHHhhhhhhccchhHh
Confidence 5554432 2233444444444443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=7.2e-07 Score=87.10 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=56.1
Q ss_pred CccEEEeeCCCCCCCCCcC----CcCCceEEEcccCCccc---cccccccccCCcEEEcCCCCCCCCCCCC-CCCCCccE
Q 005207 67 KLRLLDWHRYPLKSLPSNL----QLDKIVEFKMCYSRIEE---LWKGIKHLNMLKVMKLSHSENLIKTPDF-TEAPNLEE 138 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~----~l~~L~~L~Ls~n~i~~---l~~~~~~l~~L~~L~Ls~~~~~~~~~~~-~~l~~L~~ 138 (709)
.+..|.+.++.+....... ...+++++||.+|.|.. +..-+.++|.|++|+|+.|++...+..+ ....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 3445566666665544322 67889999999999884 3334678999999999999877666554 46678888
Q ss_pred EeccCC
Q 005207 139 LYLEGC 144 (709)
Q Consensus 139 L~L~~~ 144 (709)
|.|.|.
T Consensus 126 lVLNgT 131 (418)
T KOG2982|consen 126 LVLNGT 131 (418)
T ss_pred EEEcCC
Confidence 888773
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.98 E-value=1.4e-07 Score=101.98 Aligned_cols=124 Identities=21% Similarity=0.170 Sum_probs=80.0
Q ss_pred CccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCC--CCCCCccEEeccC
Q 005207 67 KLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDF--TEAPNLEELYLEG 143 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~--~~l~~L~~L~L~~ 143 (709)
.|...+.+.|.+..+.... -++.|+.|+|++|+++... .+..+++|++|||++|.+.. .|.+ .++. |+.|.|++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhcc-ccccchhhhh-heeeeecc
Confidence 4444455556665555555 4677788888888887764 67778888888888876433 3332 2344 77888877
Q ss_pred CccccccCcccccccccccCCCccEEEccCCCCCCcC-CccccCCCccceeeccCCCcc
Q 005207 144 CTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKF-PHVVGSMECLQELLLDGTDIK 201 (709)
Q Consensus 144 ~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~-~~~l~~l~~L~~L~l~~~~i~ 201 (709)
| .++ .+..+.+|++|+.||++.|-+.+.- -..++.+..|+.|+|.||.+.
T Consensus 242 N-~l~-------tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 N-ALT-------TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred c-HHH-------hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6 222 3445556777888888887665432 234556677788888888765
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.86 E-value=2.4e-05 Score=72.69 Aligned_cols=107 Identities=22% Similarity=0.251 Sum_probs=65.0
Q ss_pred CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCC-CCCCccEEeccCCccccccCcccccccccccCC
Q 005207 86 QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFT-EAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVE 164 (709)
Q Consensus 86 ~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~-~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~ 164 (709)
...+...+||++|.+..+ ..+..++.|.+|.|++|++....|.+. -+++|..|.|.+| ++.+ ++.+..|..+|
T Consensus 40 ~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~----l~dl~pLa~~p 113 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQE----LGDLDPLASCP 113 (233)
T ss_pred cccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhh----hhhcchhccCC
Confidence 445666777777777665 356677777777777777777666655 3456777777776 3332 34455555566
Q ss_pred CccEEEccCCCCCCcC---CccccCCCccceeeccCC
Q 005207 165 SLKILILSGCLKLRKF---PHVVGSMECLQELLLDGT 198 (709)
Q Consensus 165 ~L~~L~Ls~~~~~~~~---~~~l~~l~~L~~L~l~~~ 198 (709)
.|++|.+-+|+....- ...+..+++|+.||+.+-
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 6666666666554321 133455556666655543
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.84 E-value=3.3e-06 Score=81.54 Aligned_cols=192 Identities=18% Similarity=0.180 Sum_probs=112.1
Q ss_pred hhcCCCCcceEEecCccccC-cccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCcc-----------cccccc
Q 005207 40 AFSLMTNLGLLKINNVQLLE-GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIE-----------ELWKGI 107 (709)
Q Consensus 40 ~f~~l~~L~~L~l~~~~l~~-~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~-----------~l~~~~ 107 (709)
....|..++.+++++|.+.. ....+...++ +-++|++.+++.-... -+...+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia----------------~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aL 88 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIA----------------NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKAL 88 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHh----------------hhcceeEeehhhhhhcccHHHHHHHHHHHHHHH
Confidence 34457778888888888763 3333322221 2345666666543222 122345
Q ss_pred ccccCCcEEEcCCCCCCCCCC-----CCCCCCCccEEeccCCccccccC-ccc-------ccccccccCCCccEEEccCC
Q 005207 108 KHLNMLKVMKLSHSENLIKTP-----DFTEAPNLEELYLEGCTKLRKVH-PSL-------LLHNKLIFVESLKILILSGC 174 (709)
Q Consensus 108 ~~l~~L~~L~Ls~~~~~~~~~-----~~~~l~~L~~L~L~~~~~l~~~~-~~i-------~~l~~L~~l~~L~~L~Ls~~ 174 (709)
-+||+|+.++||.|.+....| -+++.++|++|.+++|. +..+. .-| +..++...-|.|+++....|
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 688999999999998866554 37788999999999984 33221 111 12234444578888888888
Q ss_pred CCCCcCC----ccccCCCccceeeccCCCccc------cCcccccCCCCcEEecCCCCCCCc----CcccccCCccCcEE
Q 005207 175 LKLRKFP----HVVGSMECLQELLLDGTDIKE------LPLSIEHLFGLVQLTLNDCKNLSS----LPVAISSFQCLRNL 240 (709)
Q Consensus 175 ~~~~~~~----~~l~~l~~L~~L~l~~~~i~~------lp~~l~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L 240 (709)
++..... ..+..-.+|+.+.+..|.|.. +-..+..+.+|+.|++.+|..... +..++...+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 7654322 233444678888888888761 112345566777777776654321 22223334455666
Q ss_pred eeeCCCCC
Q 005207 241 KLSGCSKL 248 (709)
Q Consensus 241 ~Ls~~~~~ 248 (709)
.+.+|-+.
T Consensus 248 ~lnDClls 255 (388)
T COG5238 248 RLNDCLLS 255 (388)
T ss_pred cccchhhc
Confidence 66555444
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=2.6e-05 Score=54.79 Aligned_cols=39 Identities=31% Similarity=0.512 Sum_probs=22.8
Q ss_pred CCCEEEcCCCCCcccChhhhcCCCcCeeccccccccccCC
Q 005207 425 SLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLP 464 (709)
Q Consensus 425 ~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 464 (709)
+|++|++++|+|+.+|+.+.+|++|+.|++++|+ ++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 5666666666666666656666666666666663 44333
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.68 E-value=1.7e-05 Score=90.34 Aligned_cols=133 Identities=23% Similarity=0.267 Sum_probs=89.4
Q ss_pred CCccEEeccCCcccc-ccCcccccccccccCCCccEEEccCCCCC-CcCCccccCCCccceeeccCCCccccCcccccCC
Q 005207 134 PNLEELYLEGCTKLR-KVHPSLLLHNKLIFVESLKILILSGCLKL-RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLF 211 (709)
Q Consensus 134 ~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~-~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~ 211 (709)
.+|++|+++|...+. ..+..++.+ +|+|+.|.+++-.+. ..+-....++++|..||+++++++.+ ..+++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~-----LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTM-----LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhh-----CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccc
Confidence 577788887754332 233334443 788888888875543 33445667889999999999999988 6888999
Q ss_pred CCcEEecCCCCCCC-cCcccccCCccCcEEeeeCCCCCCcC------chhhccCCCCCeeeccCccCc
Q 005207 212 GLVQLTLNDCKNLS-SLPVAISSFQCLRNLKLSGCSKLKKF------PQIVTTMEDLSELNLDGTSIT 272 (709)
Q Consensus 212 ~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~Ls~~~~~~~~------~~~~~~l~~L~~L~L~~~~i~ 272 (709)
+|+.|.+.+-.... ..-..+.++++|++||+|........ -+....+|+|+.||.+++.+.
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 99998887644332 11113566899999999876554332 122245788888888887776
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.54 E-value=6.2e-05 Score=52.88 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=21.0
Q ss_pred CceEEEcccCCccccccccccccCCcEEEcCCCCC
Q 005207 89 KIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSEN 123 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~ 123 (709)
+|++|++++|+|+.++..+.++++|+.|++++|++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 56666666666666665566666666666666654
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.47 E-value=0.00022 Score=66.41 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=82.0
Q ss_pred ceEEecCccccC--cccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCcccccccc-ccccCCcEEEcCCCCCC
Q 005207 48 GLLKINNVQLLE--GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGI-KHLNMLKVMKLSHSENL 124 (709)
Q Consensus 48 ~~L~l~~~~l~~--~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~-~~l~~L~~L~Ls~~~~~ 124 (709)
+.+++.+.+++. .+...-.+.-.+++++|.+..++..-.+++|..|.|.+|+|+.+...+ ..+++|+.|.|.+|.+.
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 344444444432 223333567778888888887776558888888888888888886655 45667888888888764
Q ss_pred CC--CCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCC
Q 005207 125 IK--TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCL 175 (709)
Q Consensus 125 ~~--~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~ 175 (709)
.. ...+..+|.|+.|.+-+|+.-.. .. ..+--+..+|+|++||...-.
T Consensus 102 ~l~dl~pLa~~p~L~~Ltll~Npv~~k-~~--YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 102 ELGDLDPLASCPKLEYLTLLGNPVEHK-KN--YRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hhhhcchhccCCccceeeecCCchhcc-cC--ceeEEEEecCcceEeehhhhh
Confidence 33 45677888888888888742221 11 112224447888888887643
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.33 E-value=9.1e-05 Score=71.82 Aligned_cols=108 Identities=16% Similarity=0.096 Sum_probs=53.8
Q ss_pred cCCCCCeeeccCccCcccCc-----ccCCCCCCCEEeccCCCCCcccc-----ccccCCCCCCEEEeeCcCCCcc----C
Q 005207 257 TMEDLSELNLDGTSITEVPS-----SIELLPGLELLNLNDCKNFARVP-----SSINGLKSLKTLNLSGCCKLEN----V 322 (709)
Q Consensus 257 ~l~~L~~L~L~~~~i~~l~~-----~~~~l~~L~~L~L~~~~~~~~l~-----~~~~~l~~L~~L~L~~~~~~~~----~ 322 (709)
.-|.|+......|++...+. .+..-.+|+.+.+..|.+...-- ..+..+.+|+.|++..|.++.. +
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 34556666666666554332 12223456666666554432210 1123456666666666655432 2
Q ss_pred CccccCCCccceeecccccccc-CCcccc------cccCCcEEEccCCC
Q 005207 323 PDTLGQVESLEELDISETAVRR-PPSSVF------LMKNLRTLSFSGCN 364 (709)
Q Consensus 323 ~~~l~~l~~L~~L~L~~n~i~~-l~~~~~------~l~~L~~L~L~~~~ 364 (709)
...+...+.|++|.+.+|-++. -...+. ..|+|..|-..+|.
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 2334455566777776665551 111111 25666666666655
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.29 E-value=8e-06 Score=70.92 Aligned_cols=77 Identities=10% Similarity=0.172 Sum_probs=45.9
Q ss_pred CccEEEeeCCCCCCCCCcC--CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccC
Q 005207 67 KLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEG 143 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~ 143 (709)
+|+..++++|.++.+|..| ..+.++.|+|++|.|..+|+.+..++.|+.|+++.|.+...+..+..+.+|-.|+..+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 5555666666666666655 4456666666666666666666666666666666665555444444445555555444
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.28 E-value=0.00013 Score=83.40 Aligned_cols=131 Identities=24% Similarity=0.342 Sum_probs=85.5
Q ss_pred CCcEEecCCCCCCC-cCcccc-cCCccCcEEeeeCCCCC-CcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEe
Q 005207 212 GLVQLTLNDCKNLS-SLPVAI-SSFQCLRNLKLSGCSKL-KKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLN 288 (709)
Q Consensus 212 ~L~~L~L~~~~~l~-~lp~~l-~~l~~L~~L~Ls~~~~~-~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~ 288 (709)
+|++|++++..... ..|..+ ..+|+|+.|.+.+-.+. ..+.....++|+|..||++++.++.+ .+++.+++|+.|.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLS 201 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHh
Confidence 55556665533221 112222 34788888888875553 23455667889999999999999888 6788899999999
Q ss_pred ccCCCCCc-cccccccCCCCCCEEEeeCcCCCccC------CccccCCCccceeeccccccc
Q 005207 289 LNDCKNFA-RVPSSINGLKSLKTLNLSGCCKLENV------PDTLGQVESLEELDISETAVR 343 (709)
Q Consensus 289 L~~~~~~~-~l~~~~~~l~~L~~L~L~~~~~~~~~------~~~l~~l~~L~~L~L~~n~i~ 343 (709)
+.+-.+.. ..-..+.+|++|+.||+|.-...... -+.-..+|.|+.||.+++.+.
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 88755433 11234567889999999875543321 122234778888888877766
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.23 E-value=2.5e-05 Score=67.90 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=65.4
Q ss_pred CccEEEeeCCCCCCCCCcC----CcCCceEEEcccCCcccccccc-ccccCCcEEEcCCCCCCCCCCCCCCCCCccEEec
Q 005207 67 KLRLLDWHRYPLKSLPSNL----QLDKIVEFKMCYSRIEELWKGI-KHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYL 141 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~----~l~~L~~L~Ls~n~i~~l~~~~-~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L 141 (709)
.+-.++++.|++..++... ...+|+..+|++|.++.+|+.| ..++.++.|+|++|++...+..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 4455666677666555433 5566777788888887777554 3455777788888777666666777788888888
Q ss_pred cCCccccccCcccccccccccCCCccEEEccCCCC
Q 005207 142 EGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLK 176 (709)
Q Consensus 142 ~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~ 176 (709)
+.| .+...|..+.. |.+|-.|+..+|..
T Consensus 108 ~~N-~l~~~p~vi~~------L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 108 RFN-PLNAEPRVIAP------LIKLDMLDSPENAR 135 (177)
T ss_pred ccC-ccccchHHHHH------HHhHHHhcCCCCcc
Confidence 776 34444544444 23344455555543
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.98 E-value=0.0001 Score=82.23 Aligned_cols=110 Identities=30% Similarity=0.493 Sum_probs=50.6
Q ss_pred CCCCcEEecCCCCCCCc--CcccccCCccCcEEeeeCC-CCCCcCc----hhhccCCCCCeeeccCcc-Cccc--CcccC
Q 005207 210 LFGLVQLTLNDCKNLSS--LPVAISSFQCLRNLKLSGC-SKLKKFP----QIVTTMEDLSELNLDGTS-ITEV--PSSIE 279 (709)
Q Consensus 210 l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~Ls~~-~~~~~~~----~~~~~l~~L~~L~L~~~~-i~~l--~~~~~ 279 (709)
++.|+.|.+..|..+.. +-.....++.|+.|++++| ......+ .....+++|+.|+++.+. +++. .....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555555443 2233444566666666552 2111111 223344555566665554 3321 11122
Q ss_pred CCCCCCEEeccCCCC-Cc-cccccccCCCCCCEEEeeCcCCC
Q 005207 280 LLPGLELLNLNDCKN-FA-RVPSSINGLKSLKTLNLSGCCKL 319 (709)
Q Consensus 280 ~l~~L~~L~L~~~~~-~~-~l~~~~~~l~~L~~L~L~~~~~~ 319 (709)
.+++|+.|.+.+|.. .. .+-.....+++|++|++++|...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 255666666555553 11 11122334556666666665554
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.65 E-value=0.00069 Score=65.94 Aligned_cols=79 Identities=25% Similarity=0.262 Sum_probs=40.7
Q ss_pred CccEEEeeCCCCCCCCCcCCcCCceEEEcccC--Ccc-ccccccccccCCcEEEcCCCCCCC--CCCCCCCCCCccEEec
Q 005207 67 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYS--RIE-ELWKGIKHLNMLKVMKLSHSENLI--KTPDFTEAPNLEELYL 141 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n--~i~-~l~~~~~~l~~L~~L~Ls~~~~~~--~~~~~~~l~~L~~L~L 141 (709)
.|+.|++.+..++++...-.+++|+.|.++.| ++. .+.-....+|+|++|+|++|++.. .++.+..+.+|..|++
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl 123 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL 123 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence 34444444444444433335556666666666 332 232233445666666666666532 2334556666667777
Q ss_pred cCCc
Q 005207 142 EGCT 145 (709)
Q Consensus 142 ~~~~ 145 (709)
.+|.
T Consensus 124 ~n~~ 127 (260)
T KOG2739|consen 124 FNCS 127 (260)
T ss_pred ccCC
Confidence 6663
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.64 E-value=0.00098 Score=64.90 Aligned_cols=87 Identities=24% Similarity=0.240 Sum_probs=61.7
Q ss_pred CcCCceEEEcccCCccccccccccccCCcEEEcCCC--CCCCCCCC-CCCCCCccEEeccCCccccccCccccccccccc
Q 005207 86 QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHS--ENLIKTPD-FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF 162 (709)
Q Consensus 86 ~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~--~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~ 162 (709)
....|+.|++.+..++.+ ..+..+++|+.|.++.| ......+. ...+|+|++|++++|. +.. +..+.-+..
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~----lstl~pl~~ 114 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD----LSTLRPLKE 114 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc----ccccchhhh
Confidence 566777777777777765 45678899999999999 54444443 4466999999999983 222 344555666
Q ss_pred CCCccEEEccCCCCCC
Q 005207 163 VESLKILILSGCLKLR 178 (709)
Q Consensus 163 l~~L~~L~Ls~~~~~~ 178 (709)
+++|..|++..|....
T Consensus 115 l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTN 130 (260)
T ss_pred hcchhhhhcccCCccc
Confidence 7778888888876554
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.52 E-value=0.00023 Score=79.48 Aligned_cols=85 Identities=32% Similarity=0.457 Sum_probs=45.6
Q ss_pred CCccCcEEeeeCCCCCCc--CchhhccCCCCCeeeccCc--cCccc----CcccCCCCCCCEEeccCCCCC-cccccccc
Q 005207 233 SFQCLRNLKLSGCSKLKK--FPQIVTTMEDLSELNLDGT--SITEV----PSSIELLPGLELLNLNDCKNF-ARVPSSIN 303 (709)
Q Consensus 233 ~l~~L~~L~Ls~~~~~~~--~~~~~~~l~~L~~L~L~~~--~i~~l----~~~~~~l~~L~~L~L~~~~~~-~~l~~~~~ 303 (709)
.++.|+.|.+.+|..... .......+++|+.|+++++ .+... ......+++|+.|+++.+... ...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 367788888887766655 3355566777888877763 11111 112344566666666665532 11111111
Q ss_pred -CCCCCCEEEeeCcC
Q 005207 304 -GLKSLKTLNLSGCC 317 (709)
Q Consensus 304 -~l~~L~~L~L~~~~ 317 (709)
.+++|++|.+.+|.
T Consensus 266 ~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCS 280 (482)
T ss_pred hhCCCcceEccCCCC
Confidence 25556666655554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.00024 Score=69.25 Aligned_cols=97 Identities=21% Similarity=0.162 Sum_probs=68.3
Q ss_pred CCCCcceEEecCccccC--cccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCcccccc--ccccccCCcEEEc
Q 005207 43 LMTNLGLLKINNVQLLE--GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWK--GIKHLNMLKVMKL 118 (709)
Q Consensus 43 ~l~~L~~L~l~~~~l~~--~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~--~~~~l~~L~~L~L 118 (709)
.+.+.+.|++.++.+.+ ....+| .|++|.++-|.++++...-.+++|++|.|+.|.|..+.+ -++++|+|+.|-|
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 35567777787777764 234443 788888888888888776688888888888888887753 3678888888888
Q ss_pred CCCCCCCCCC------CCCCCCCccEEe
Q 005207 119 SHSENLIKTP------DFTEAPNLEELY 140 (709)
Q Consensus 119 s~~~~~~~~~------~~~~l~~L~~L~ 140 (709)
..|.-....+ -+..+|||++||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 8776554432 244566776665
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.00031 Score=68.52 Aligned_cols=99 Identities=19% Similarity=0.191 Sum_probs=48.7
Q ss_pred CceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccE
Q 005207 89 KIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKI 168 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~ 168 (709)
+.+.|++-++.+..+ .-...++.|++|.|+-|++.+ ...+..|++|++|+|+.| .+. ++..+..|+.+++|++
T Consensus 20 ~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN-~I~----sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKN-CIE----SLDELEYLKNLPSLRT 92 (388)
T ss_pred HhhhhcccCCCccHH-HHHHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhc-ccc----cHHHHHHHhcCchhhh
Confidence 334444444444433 123344444444444444322 223455566666666654 121 3344455556666777
Q ss_pred EEccCCCCCCcCC-----ccccCCCccceee
Q 005207 169 LILSGCLKLRKFP-----HVVGSMECLQELL 194 (709)
Q Consensus 169 L~Ls~~~~~~~~~-----~~l~~l~~L~~L~ 194 (709)
|.|..|+-.+.-+ .++.-+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7666665544333 2345566666665
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.40 E-value=0.055 Score=48.07 Aligned_cols=105 Identities=15% Similarity=0.217 Sum_probs=50.6
Q ss_pred eeehhhhcCCCCcceEEecCcc--ccCcccccCcCccEEEeeCCCCCCCCCcC--CcCCceEEEcccCCccccc-ccccc
Q 005207 35 HLSAKAFSLMTNLGLLKINNVQ--LLEGLEYLSNKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELW-KGIKH 109 (709)
Q Consensus 35 ~l~~~~f~~l~~L~~L~l~~~~--l~~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~i~~l~-~~~~~ 109 (709)
.|...+|.++++|+.+.+.+.- +......-..+|+.+.+.++ +..++... .+..|+.+.+.+ .+..++ ..+..
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp EE-TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred EECHHHHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 3556677777777777765321 22222222246777777663 66666433 565777777765 555555 34666
Q ss_pred ccCCcEEEcCCCCCCCC-CCCCCCCCCccEEeccC
Q 005207 110 LNMLKVMKLSHSENLIK-TPDFTEAPNLEELYLEG 143 (709)
Q Consensus 110 l~~L~~L~Ls~~~~~~~-~~~~~~l~~L~~L~L~~ 143 (709)
+++|+.+.+..+ +... ...|.++ +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 777877777654 2222 2346666 777777765
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.20 E-value=0.091 Score=46.60 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=48.5
Q ss_pred CCcceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCcc--ccCcccccCcCccEEEeeCCCCCCCCCcC--CcCCc
Q 005207 15 GSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQ--LLEGLEYLSNKLRLLDWHRYPLKSLPSNL--QLDKI 90 (709)
Q Consensus 15 g~~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~--l~~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L 90 (709)
++.+++.+.+... ...+...+|+.+++|+.+.+.++- +......-..+|+.+.+.. .+..++... .+.+|
T Consensus 10 ~~~~l~~i~~~~~-----~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 10 NCSNLESITFPNT-----IKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp T-TT--EEEETST-------EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred CCCCCCEEEECCC-----eeEeChhhcccccccccccccccccccceeeeecccccccccccc-cccccccccccccccc
Confidence 4446666665532 346777777777777777776531 1222222223677777754 555555433 47777
Q ss_pred eEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCCCCCCCCCc
Q 005207 91 VEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTPDFTEAPNL 136 (709)
Q Consensus 91 ~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L 136 (709)
+.+.+..+ +..++. .+.+. +|+.+.+..+-.......|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPSNITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TTB-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECCCccEECCccccccccC
Confidence 77777654 665553 35565 7777776653111111235555554
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.48 E-value=0.016 Score=33.85 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=11.9
Q ss_pred CCCEEEcCCCCCcccChhhh
Q 005207 425 SLNELYLSKNNFVTLPASIN 444 (709)
Q Consensus 425 ~L~~L~L~~n~l~~lp~~i~ 444 (709)
+|++|+|++|+++.+|++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665543
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.22 E-value=0.023 Score=33.17 Aligned_cols=21 Identities=0% Similarity=0.083 Sum_probs=12.9
Q ss_pred CceEEEcccCCcccccccccc
Q 005207 89 KIVEFKMCYSRIEELWKGIKH 109 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~~~~~~ 109 (709)
+|++|+|++|+|+.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.18 E-value=0.058 Score=29.19 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=5.5
Q ss_pred CCCEEEcCCCCCccc
Q 005207 425 SLNELYLSKNNFVTL 439 (709)
Q Consensus 425 ~L~~L~L~~n~l~~l 439 (709)
+|+.|+|++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.57 E-value=0.16 Score=27.46 Aligned_cols=16 Identities=50% Similarity=0.665 Sum_probs=5.7
Q ss_pred CccEEEeeCCCCCCCC
Q 005207 67 KLRLLDWHRYPLKSLP 82 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp 82 (709)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444455544444443
No 75
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=89.17 E-value=0.26 Score=27.78 Aligned_cols=19 Identities=47% Similarity=1.121 Sum_probs=17.1
Q ss_pred CceEEEcccCCcccccccc
Q 005207 89 KIVEFKMCYSRIEELWKGI 107 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~~~~ 107 (709)
+|++|+|++++++++|++.
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 5899999999999999875
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.50 E-value=0.42 Score=28.97 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=16.0
Q ss_pred CCCCCEEEcCCCCCcccChhh
Q 005207 423 LHSLNELYLSKNNFVTLPASI 443 (709)
Q Consensus 423 l~~L~~L~L~~n~l~~lp~~i 443 (709)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888887654
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.50 E-value=0.42 Score=28.97 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=16.0
Q ss_pred CCCCCEEEcCCCCCcccChhh
Q 005207 423 LHSLNELYLSKNNFVTLPASI 443 (709)
Q Consensus 423 l~~L~~L~L~~n~l~~lp~~i 443 (709)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888887654
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.27 E-value=0.017 Score=55.17 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=56.9
Q ss_pred ehhhhcCCCCcceEEecCcccc---CcccccCcCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccC
Q 005207 37 SAKAFSLMTNLGLLKINNVQLL---EGLEYLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNM 112 (709)
Q Consensus 37 ~~~~f~~l~~L~~L~l~~~~l~---~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~ 112 (709)
+-.......+.+.||++.|++. ..+..+ ..|..|+++.|++..+|.++ ....++.+++..|+.+++|.+++..++
T Consensus 34 ~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~-t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 34 PVREIASFKRVTVLDLSSNRLVNLGKNFSIL-TRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPH 112 (326)
T ss_pred chhhhhccceeeeehhhhhHHHhhccchHHH-HHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCC
Confidence 3345566677777777777654 222222 56666777777777777777 667777777777777777777777777
Q ss_pred CcEEEcCCCC
Q 005207 113 LKVMKLSHSE 122 (709)
Q Consensus 113 L~~L~Ls~~~ 122 (709)
++++++-++.
T Consensus 113 ~k~~e~k~~~ 122 (326)
T KOG0473|consen 113 PKKNEQKKTE 122 (326)
T ss_pred cchhhhccCc
Confidence 7777766665
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=86.32 E-value=0.0063 Score=66.72 Aligned_cols=86 Identities=23% Similarity=0.276 Sum_probs=40.2
Q ss_pred CCCCCeeeccCccCcc-----cCcccCCCCC-CCEEeccCCCCCcc----ccccccCC-CCCCEEEeeCcCCCccC----
Q 005207 258 MEDLSELNLDGTSITE-----VPSSIELLPG-LELLNLNDCKNFAR----VPSSINGL-KSLKTLNLSGCCKLENV---- 322 (709)
Q Consensus 258 l~~L~~L~L~~~~i~~-----l~~~~~~l~~-L~~L~L~~~~~~~~----l~~~~~~l-~~L~~L~L~~~~~~~~~---- 322 (709)
..++++|+++++.++. +...+...+. +..|++..|..... +...+..+ ..+++++++.|++.+.-
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 4455555555555541 1112333333 44455555544322 11222333 45566666666554432
Q ss_pred CccccCCCccceeeccccccc
Q 005207 323 PDTLGQVESLEELDISETAVR 343 (709)
Q Consensus 323 ~~~l~~l~~L~~L~L~~n~i~ 343 (709)
...+..++.++++.++.|.+.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhhhHHHHHhhcccCccc
Confidence 233344556666666666554
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=86.26 E-value=0.0069 Score=66.41 Aligned_cols=38 Identities=26% Similarity=0.219 Sum_probs=20.8
Q ss_pred CCccEEEccCCCCCC----cCCccccCCCccceeeccCCCcc
Q 005207 164 ESLKILILSGCLKLR----KFPHVVGSMECLQELLLDGTDIK 201 (709)
Q Consensus 164 ~~L~~L~Ls~~~~~~----~~~~~l~~l~~L~~L~l~~~~i~ 201 (709)
..|++|++..|.+.. .+.+.+.....++.++++.|.+.
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 345555555555442 23344555666666666666653
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.51 E-value=0.15 Score=48.14 Aligned_cols=34 Identities=32% Similarity=0.301 Sum_probs=19.4
Q ss_pred CCCCEEEcCCC-CCcc-cChhhhcCCCcCeeccccc
Q 005207 424 HSLNELYLSKN-NFVT-LPASINSLLNLKELEMEDC 457 (709)
Q Consensus 424 ~~L~~L~L~~n-~l~~-lp~~i~~l~~L~~L~L~~c 457 (709)
++|+.|+|++| +|++ --.++..+++|+.|.+.+-
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 56666666665 3442 1235566666666666554
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.53 E-value=0.34 Score=45.78 Aligned_cols=78 Identities=18% Similarity=0.280 Sum_probs=49.3
Q ss_pred CCCEEEcCCCCCccc-ChhhhcCCCcCeecccccccc-----ccCCCCCCCccEEEecCCCCcceecC--ccccccccCc
Q 005207 425 SLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRL-----QFLPQLPPNIIFVKVNGCSSLVTLLG--ALKLCKSNGI 496 (709)
Q Consensus 425 ~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L-----~~lp~lp~sL~~L~i~~C~~L~~l~~--~~~~~~l~~l 496 (709)
.++.++-+++.|... -+.+..++.++.|.+.+|+.+ +.+..+.++|+.|++++|+.+++-.- ...+.+++.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 456666666665522 134567778888888888765 35556778999999999998877431 1123344444
Q ss_pred cccccc
Q 005207 497 VIECID 502 (709)
Q Consensus 497 ~~~~c~ 502 (709)
.+.+.+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 444433
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.81 E-value=0.84 Score=27.63 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=16.6
Q ss_pred CCccceeeccccccccCCcccc
Q 005207 329 VESLEELDISETAVRRPPSSVF 350 (709)
Q Consensus 329 l~~L~~L~L~~n~i~~l~~~~~ 350 (709)
+++|+.|++++|.++.+|...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4577888888888888877654
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.81 E-value=0.84 Score=27.63 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=16.6
Q ss_pred CCccceeeccccccccCCcccc
Q 005207 329 VESLEELDISETAVRRPPSSVF 350 (709)
Q Consensus 329 l~~L~~L~L~~n~i~~l~~~~~ 350 (709)
+++|+.|++++|.++.+|...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4577888888888888877654
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.38 E-value=0.064 Score=51.45 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=47.7
Q ss_pred cCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCC
Q 005207 66 NKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC 144 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~ 144 (709)
...+.||++.|++-.+-..+ .+..|+.|+++.|+|..+|+.++....++.+++..|.....+-.+...+.++++++.++
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 45566666666665555555 55666666666666666666666666666666665554444445556666666665554
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.72 E-value=1.8 Score=26.28 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=9.4
Q ss_pred cCccEEEeeCCCCCCCCC
Q 005207 66 NKLRLLDWHRYPLKSLPS 83 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~ 83 (709)
.+|++|+.++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 345555555555555554
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.85 E-value=2 Score=26.12 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=12.5
Q ss_pred CCCCEEEcCCCCCcccCh
Q 005207 424 HSLNELYLSKNNFVTLPA 441 (709)
Q Consensus 424 ~~L~~L~L~~n~l~~lp~ 441 (709)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 456777777777777774
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=66.79 E-value=3.8 Score=24.74 Aligned_cols=15 Identities=33% Similarity=0.806 Sum_probs=8.7
Q ss_pred CCcCeeccccccccc
Q 005207 447 LNLKELEMEDCKRLQ 461 (709)
Q Consensus 447 ~~L~~L~L~~c~~L~ 461 (709)
++|++|+|++|+.++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 456666666665543
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.00 E-value=4.8 Score=24.54 Aligned_cols=16 Identities=13% Similarity=0.455 Sum_probs=10.2
Q ss_pred CCceEEEcccCCcccc
Q 005207 88 DKIVEFKMCYSRIEEL 103 (709)
Q Consensus 88 ~~L~~L~Ls~n~i~~l 103 (709)
.+|++|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666766666544
No 90
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=58.48 E-value=5.8 Score=23.32 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=7.4
Q ss_pred CCCCEEEcCCCCCc
Q 005207 424 HSLNELYLSKNNFV 437 (709)
Q Consensus 424 ~~L~~L~L~~n~l~ 437 (709)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666654
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=39.44 E-value=24 Score=21.72 Aligned_cols=14 Identities=50% Similarity=0.489 Sum_probs=9.5
Q ss_pred CCCCEEEcCCCCCc
Q 005207 424 HSLNELYLSKNNFV 437 (709)
Q Consensus 424 ~~L~~L~L~~n~l~ 437 (709)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46677777777665
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.04 E-value=14 Score=40.66 Aligned_cols=20 Identities=20% Similarity=0.564 Sum_probs=15.8
Q ss_pred CcCCCceEEEEEEEEEecCC
Q 005207 561 LYNMNKIVGYAICCVFHVPR 580 (709)
Q Consensus 561 ~~~~~~~~gf~~c~v~~~~~ 580 (709)
|+...+.+||++--||...+
T Consensus 440 ~~~~~~~l~ftv~G~f~d~~ 459 (585)
T KOG3763|consen 440 WYQTGNLLGFTVAGVFRDGE 459 (585)
T ss_pred eecccceEEEEEEEEeecCC
Confidence 77666889999999987754
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.77 E-value=18 Score=39.81 Aligned_cols=82 Identities=22% Similarity=0.208 Sum_probs=51.8
Q ss_pred CCCCCCEEeccCCCCCC-CCCCCCCCCCCCCCEEEcCCC--CCcccChhhh--cCCCcCeeccccccccccCC-------
Q 005207 397 GLRSLTKLDLSDCGLGE-GAIPSDIGNLHSLNELYLSKN--NFVTLPASIN--SLLNLKELEMEDCKRLQFLP------- 464 (709)
Q Consensus 397 ~l~~L~~L~Ls~n~l~~-~~~~~~l~~l~~L~~L~L~~n--~l~~lp~~i~--~l~~L~~L~L~~c~~L~~lp------- 464 (709)
+.+.+..+.|++|++.. +.+.+.-...|+|..|+|++| .+...+ ++. +...|++|-+.+|+..+..-
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 55778888899998753 112222344588999999998 443333 222 35568889999998765443
Q ss_pred ---CCCCCccEEEecCCC
Q 005207 465 ---QLPPNIIFVKVNGCS 479 (709)
Q Consensus 465 ---~lp~sL~~L~i~~C~ 479 (709)
+.+|.|..|+=...+
T Consensus 295 ~i~~~FPKL~~LDG~ev~ 312 (585)
T KOG3763|consen 295 AIRELFPKLLRLDGVEVQ 312 (585)
T ss_pred HHHHhcchheeecCcccC
Confidence 355666666544433
No 94
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=24.92 E-value=1.2e+02 Score=20.89 Aligned_cols=33 Identities=6% Similarity=0.069 Sum_probs=15.1
Q ss_pred cCcCccEEEeeCCCCCCCCCcCCcCCceEEEcc
Q 005207 64 LSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMC 96 (709)
Q Consensus 64 l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls 96 (709)
+|.++++|.+..+--..+....-+..|+.|.+.
T Consensus 10 iP~~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 10 IPSSLKSLIFGSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred eCCCCeEEEECCccCccCCCCccCCCceEEEee
Confidence 455666666633322233333334455555543
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=22.31 E-value=6.9e+02 Score=27.53 Aligned_cols=272 Identities=16% Similarity=0.008 Sum_probs=0.0
Q ss_pred CCccEEeccCCccccccCcccccccccccC-------------------CCccEEEccCCCCCCcCCccccCC---Cccc
Q 005207 134 PNLEELYLEGCTKLRKVHPSLLLHNKLIFV-------------------ESLKILILSGCLKLRKFPHVVGSM---ECLQ 191 (709)
Q Consensus 134 ~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l-------------------~~L~~L~Ls~~~~~~~~~~~l~~l---~~L~ 191 (709)
+.+++++++.|....++|..+..-..=..+ ..+.+++++.|.....+|..+..+ .-++
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~ 244 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLF 244 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhh
Q ss_pred eeeccCCCcc----ccCcccccCCCCcEEecCCCCCC--------CcCcccccCCccCcEEeeeCCCCCCcCchhh----
Q 005207 192 ELLLDGTDIK----ELPLSIEHLFGLVQLTLNDCKNL--------SSLPVAISSFQCLRNLKLSGCSKLKKFPQIV---- 255 (709)
Q Consensus 192 ~L~l~~~~i~----~lp~~l~~l~~L~~L~L~~~~~l--------~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~---- 255 (709)
.++.+...+. .-+-..+.-++|+..+++.+... ...-..+..-.++ +|++..+..-..-+..+
T Consensus 245 ~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgl 323 (553)
T KOG4242|consen 245 KLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGL 323 (553)
T ss_pred cccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhccc
Q ss_pred --ccCCCCCeeeccCccCc--ccCcccCCCCCCCEEeccCCCCCcccccc--ccCCCCCCEEEeeCcCCCccCCccccCC
Q 005207 256 --TTMEDLSELNLDGTSIT--EVPSSIELLPGLELLNLNDCKNFARVPSS--INGLKSLKTLNLSGCCKLENVPDTLGQV 329 (709)
Q Consensus 256 --~~l~~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~L~~~~~~~~l~~~--~~~l~~L~~L~L~~~~~~~~~~~~l~~l 329 (709)
..-..=-.+++..|... +....-.+-.++++|.+++|..-+..-.. +..-++.+.+++.+-......-......
T Consensus 324 a~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~ 403 (553)
T KOG4242|consen 324 AENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAP 403 (553)
T ss_pred ccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceeccccccch
Q ss_pred C---------ccceeeccccccccCCccccc----ccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCC-C
Q 005207 330 E---------SLEELDISETAVRRPPSSVFL----MKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS-L 395 (709)
Q Consensus 330 ~---------~L~~L~L~~n~i~~l~~~~~~----l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-l 395 (709)
. -+..+.++.+....-+....+ -+.+.+|++++|. ........+|. .
T Consensus 404 ~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~-------------------mgd~gap~lpkal 464 (553)
T KOG4242|consen 404 PVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNG-------------------MGDGGAPPLPKAL 464 (553)
T ss_pred hhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCC-------------------cccCCCCcCcccc
Q ss_pred CCCCCCCEEeccCCCCCCCCCCCCCCCCCC
Q 005207 396 SGLRSLTKLDLSDCGLGEGAIPSDIGNLHS 425 (709)
Q Consensus 396 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 425 (709)
..-..++....+.|...+..++......+.
T Consensus 465 q~n~rlr~ipds~n~p~~~gl~p~~~~~p~ 494 (553)
T KOG4242|consen 465 QSNCRLRPIPDSLNLPEDPGLGPRNEERPL 494 (553)
T ss_pred CCCCccCCCCCCCCCccccccchhhhhccc
Done!