Query 005207
Match_columns 709
No_of_seqs 591 out of 4102
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 18:39:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005207.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005207hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7E-42 2.4E-46 401.2 34.7 460 41-502 174-738 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-41 4E-46 399.2 26.6 414 39-481 241-740 (768)
3 3t6q_A CD180 antigen; protein- 100.0 8.8E-40 3E-44 374.2 35.9 335 17-364 33-436 (606)
4 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-38 3.7E-43 365.1 32.4 425 17-479 32-556 (606)
5 4eco_A Uncharacterized protein 100.0 6.6E-40 2.3E-44 375.8 20.8 424 17-480 81-599 (636)
6 4ecn_A Leucine-rich repeat pro 100.0 1.5E-38 5.2E-43 370.9 26.3 422 17-480 323-839 (876)
7 3t6q_A CD180 antigen; protein- 100.0 1.2E-36 4.2E-41 348.1 38.9 383 46-458 34-460 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 3.2E-36 1.1E-40 349.3 41.2 473 17-501 25-594 (680)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-36 4.2E-41 348.1 31.8 379 45-458 32-484 (606)
10 1ziw_A TOLL-like receptor 3; i 100.0 5.2E-36 1.8E-40 347.6 37.3 441 15-485 47-600 (680)
11 4ecn_A Leucine-rich repeat pro 100.0 8E-37 2.7E-41 356.4 30.0 349 128-504 442-840 (876)
12 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-36 9.9E-41 357.1 35.1 446 16-477 23-556 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 1.7E-36 5.8E-41 344.3 30.1 423 17-479 28-529 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 4.6E-36 1.6E-40 340.7 29.2 422 45-502 28-529 (570)
15 4eco_A Uncharacterized protein 100.0 4.8E-36 1.6E-40 343.8 25.4 348 128-502 200-598 (636)
16 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-34 4.1E-39 343.3 36.4 423 43-479 22-537 (844)
17 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-36 1E-40 338.4 20.3 422 17-479 21-479 (520)
18 2z81_A CD282 antigen, TOLL-lik 100.0 6E-35 2.1E-39 330.0 31.2 427 17-479 26-508 (549)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-34 4.7E-39 324.8 27.2 412 48-501 3-478 (520)
20 2z81_A CD282 antigen, TOLL-lik 100.0 3.1E-34 1.1E-38 324.2 23.4 418 45-502 26-508 (549)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1E-32 3.4E-37 312.5 32.2 395 45-478 52-507 (562)
22 3v47_A TOLL-like receptor 5B a 100.0 1.7E-32 5.8E-37 302.4 30.2 371 50-461 15-409 (455)
23 1jl5_A Outer protein YOPM; leu 100.0 2.1E-32 7.2E-37 300.2 30.1 386 16-479 10-427 (454)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.4E-32 8.2E-37 309.4 30.5 418 44-501 30-507 (562)
25 1o6v_A Internalin A; bacterial 100.0 6.2E-32 2.1E-36 298.7 32.3 342 66-459 46-387 (466)
26 1o6v_A Internalin A; bacterial 100.0 8.4E-32 2.9E-36 297.6 31.9 348 43-442 44-393 (466)
27 3v47_A TOLL-like receptor 5B a 100.0 3.3E-31 1.1E-35 292.1 26.7 365 68-479 12-406 (455)
28 4g8a_A TOLL-like receptor 4; l 100.0 2E-30 6.8E-35 298.0 31.4 427 17-479 52-578 (635)
29 4g8a_A TOLL-like receptor 4; l 100.0 6.1E-30 2.1E-34 293.9 33.2 419 46-500 53-576 (635)
30 1jl5_A Outer protein YOPM; leu 100.0 1.1E-29 3.8E-34 278.5 32.5 344 47-463 73-432 (454)
31 3bz5_A Internalin-J, INLJ; leu 100.0 9.5E-31 3.2E-35 287.2 23.9 344 40-464 37-391 (457)
32 4fmz_A Internalin; leucine ric 100.0 2.7E-30 9.4E-35 274.1 25.8 239 184-458 106-344 (347)
33 2id5_A Lingo-1, leucine rich r 100.0 1.1E-29 3.7E-34 281.8 29.1 311 48-365 14-332 (477)
34 4fmz_A Internalin; leucine ric 100.0 1.2E-29 4E-34 269.3 27.3 305 40-365 39-345 (347)
35 2id5_A Lingo-1, leucine rich r 100.0 3.8E-29 1.3E-33 277.3 29.1 315 68-459 13-332 (477)
36 3bz5_A Internalin-J, INLJ; leu 100.0 8.4E-29 2.9E-33 271.7 30.9 322 66-457 42-365 (457)
37 3o6n_A APL1; leucine-rich repe 100.0 1.3E-28 4.5E-33 265.6 27.3 282 66-365 45-330 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 1.5E-28 5E-33 265.2 24.9 263 84-364 41-306 (390)
39 3oja_B Anopheles plasmodium-re 100.0 6E-28 2E-32 274.9 26.9 282 66-365 51-336 (597)
40 3oja_B Anopheles plasmodium-re 100.0 1.1E-27 3.9E-32 272.7 24.7 309 84-437 47-358 (597)
41 1xku_A Decorin; proteoglycan, 100.0 6.1E-27 2.1E-31 246.5 27.1 284 67-364 32-330 (330)
42 1xku_A Decorin; proteoglycan, 100.0 9.9E-27 3.4E-31 244.9 27.9 242 88-365 31-275 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 5.6E-27 1.9E-31 247.0 24.9 283 67-364 34-331 (332)
44 2ft3_A Biglycan; proteoglycan, 99.9 2E-26 6.7E-31 242.8 26.4 239 89-364 34-275 (332)
45 1ogq_A PGIP-2, polygalacturona 99.9 9.9E-27 3.4E-31 242.7 15.1 246 88-341 50-302 (313)
46 1ogq_A PGIP-2, polygalacturona 99.9 1E-26 3.4E-31 242.7 14.3 251 165-464 51-308 (313)
47 1z7x_W Ribonuclease inhibitor; 99.9 6.1E-29 2.1E-33 274.4 -6.3 34 424-457 370-408 (461)
48 1z7x_W Ribonuclease inhibitor; 99.9 2.1E-28 7.3E-33 270.0 -2.6 348 65-438 2-412 (461)
49 4fcg_A Uncharacterized protein 99.9 6.3E-25 2.1E-29 230.5 19.6 229 66-316 81-311 (328)
50 4fcg_A Uncharacterized protein 99.9 8.5E-25 2.9E-29 229.5 20.5 199 164-364 104-312 (328)
51 2z80_A TOLL-like receptor 2, v 99.9 2.7E-24 9.3E-29 228.5 16.3 251 189-458 53-312 (353)
52 2z66_A Variable lymphocyte rec 99.9 2.9E-24 1E-28 223.4 16.1 242 70-319 11-261 (306)
53 3ogk_B Coronatine-insensitive 99.9 4.6E-26 1.6E-30 259.6 0.7 151 163-314 191-350 (592)
54 3ogk_B Coronatine-insensitive 99.9 2.1E-26 7.3E-31 262.4 -2.1 395 37-458 65-524 (592)
55 2z80_A TOLL-like receptor 2, v 99.9 6.1E-24 2.1E-28 225.7 15.9 268 68-365 33-313 (353)
56 2z66_A Variable lymphocyte rec 99.9 4.3E-24 1.5E-28 222.2 14.4 245 48-297 10-263 (306)
57 3zyj_A Leucine-rich repeat-con 99.9 7.1E-23 2.4E-27 224.3 24.5 244 189-458 44-290 (440)
58 3zyi_A Leucine-rich repeat-con 99.9 8.5E-23 2.9E-27 224.5 23.3 243 190-458 56-301 (452)
59 3g06_A SSPH2 (leucine-rich rep 99.9 4.4E-22 1.5E-26 224.9 29.7 256 46-365 41-296 (622)
60 3g06_A SSPH2 (leucine-rich rep 99.9 4.4E-22 1.5E-26 224.9 29.7 236 66-367 40-275 (622)
61 1ozn_A Reticulon 4 receptor; N 99.9 4.1E-23 1.4E-27 212.4 16.1 265 69-340 14-284 (285)
62 3o53_A Protein LRIM1, AGAP0063 99.9 2.8E-24 9.5E-29 224.7 7.0 242 164-463 34-278 (317)
63 1ozn_A Reticulon 4 receptor; N 99.9 6.9E-23 2.4E-27 210.7 17.3 220 91-319 14-238 (285)
64 3zyi_A Leucine-rich repeat-con 99.9 4.4E-22 1.5E-26 218.8 23.8 241 69-364 57-301 (452)
65 3zyj_A Leucine-rich repeat-con 99.9 6.5E-22 2.2E-26 216.6 24.5 243 91-365 46-291 (440)
66 2p1m_B Transport inhibitor res 99.9 2E-25 6.9E-30 254.4 -5.2 227 37-269 58-324 (594)
67 1wwl_A Monocyte differentiatio 99.9 5.8E-24 2E-28 221.8 5.6 200 233-458 93-307 (312)
68 3o53_A Protein LRIM1, AGAP0063 99.9 7.5E-24 2.6E-28 221.4 5.5 253 47-339 12-271 (317)
69 2p1m_B Transport inhibitor res 99.9 1.9E-24 6.4E-29 246.3 -5.4 268 40-314 100-405 (594)
70 1wwl_A Monocyte differentiatio 99.9 6.9E-23 2.4E-27 213.6 6.1 250 108-365 40-308 (312)
71 3oja_A Leucine-rich immune mol 99.9 4.1E-22 1.4E-26 220.5 8.5 239 164-460 34-275 (487)
72 3oja_A Leucine-rich immune mol 99.8 3.5E-21 1.2E-25 213.0 14.7 224 202-460 21-250 (487)
73 2z62_A TOLL-like receptor 4, v 99.8 1E-19 3.5E-24 186.0 20.6 220 70-320 11-238 (276)
74 1p9a_G Platelet glycoprotein I 99.8 1.4E-19 4.8E-24 186.2 21.1 201 184-458 6-206 (290)
75 1p9a_G Platelet glycoprotein I 99.8 2.5E-19 8.5E-24 184.3 21.1 196 231-479 6-206 (290)
76 2z62_A TOLL-like receptor 4, v 99.8 2.7E-19 9.1E-24 182.9 20.4 219 49-295 11-237 (276)
77 2o6q_A Variable lymphocyte rec 99.8 8.4E-19 2.9E-23 178.6 23.0 149 190-363 18-167 (270)
78 2o6q_A Variable lymphocyte rec 99.8 1.3E-18 4.6E-23 177.1 22.1 177 166-342 39-217 (270)
79 3rfs_A Internalin B, repeat mo 99.8 8.9E-20 3.1E-24 186.0 12.4 93 231-330 153-246 (272)
80 2xwt_C Thyrotropin receptor; s 99.8 2.9E-19 1E-23 178.5 15.4 58 399-459 179-238 (239)
81 3rfs_A Internalin B, repeat mo 99.8 5.2E-19 1.8E-23 180.3 15.8 206 187-448 40-247 (272)
82 2ast_B S-phase kinase-associat 99.8 6.3E-20 2.2E-24 193.2 9.2 245 89-345 48-308 (336)
83 2xwt_C Thyrotropin receptor; s 99.8 7.1E-19 2.4E-23 175.7 15.3 194 89-292 32-236 (239)
84 4glp_A Monocyte differentiatio 99.8 9.6E-19 3.3E-23 182.0 16.2 226 133-365 63-306 (310)
85 2ast_B S-phase kinase-associat 99.8 2.4E-20 8.3E-25 196.4 3.5 81 164-245 70-152 (336)
86 2ca6_A RAN GTPase-activating p 99.8 2.1E-20 7.3E-25 200.9 2.2 254 90-343 11-316 (386)
87 1h6u_A Internalin H; cell adhe 99.8 2.7E-18 9.3E-23 178.3 17.9 189 66-294 41-229 (308)
88 1h6u_A Internalin H; cell adhe 99.8 1.5E-18 5.3E-23 180.1 15.9 193 86-320 39-231 (308)
89 4ay9_X Follicle-stimulating ho 99.8 4.5E-18 1.5E-22 180.1 19.5 237 69-315 12-255 (350)
90 2ca6_A RAN GTPase-activating p 99.8 2.9E-20 9.9E-25 199.9 0.5 134 306-458 159-314 (386)
91 4ay9_X Follicle-stimulating ho 99.8 1.4E-17 4.6E-22 176.4 19.1 223 192-466 13-242 (350)
92 4glp_A Monocyte differentiatio 99.8 5.2E-18 1.8E-22 176.5 15.4 200 236-459 92-306 (310)
93 3goz_A Leucine-rich repeat-con 99.8 1.6E-19 5.6E-24 192.1 3.4 177 168-344 2-210 (362)
94 3m19_A Variable lymphocyte rec 99.7 6.5E-17 2.2E-21 162.7 18.7 175 189-365 15-191 (251)
95 3m19_A Variable lymphocyte rec 99.7 1E-16 3.6E-21 161.2 19.3 174 260-458 15-190 (251)
96 3cvr_A Invasion plasmid antige 99.7 5.7E-17 2E-21 180.9 15.4 192 40-257 49-252 (571)
97 3goz_A Leucine-rich repeat-con 99.7 1.2E-18 4.1E-23 185.4 1.7 243 71-343 3-297 (362)
98 3cvr_A Invasion plasmid antige 99.7 2E-16 7E-21 176.4 16.0 187 67-303 60-251 (571)
99 1h6t_A Internalin B; cell adhe 99.7 7.7E-16 2.6E-20 158.3 14.7 76 67-144 47-122 (291)
100 2o6s_A Variable lymphocyte rec 99.6 1.6E-15 5.3E-20 147.8 14.5 129 236-364 29-159 (208)
101 1h6t_A Internalin B; cell adhe 99.6 1.2E-15 4.1E-20 156.8 14.3 167 163-364 45-211 (291)
102 1m9s_A Internalin B; cell inva 99.6 8E-16 2.7E-20 173.5 13.7 161 47-221 23-185 (605)
103 2o6s_A Variable lymphocyte rec 99.6 5.8E-15 2E-19 143.8 15.8 156 165-327 29-186 (208)
104 2v9t_B SLIT homolog 2 protein 99.6 9E-15 3.1E-19 143.7 16.4 149 262-458 14-163 (220)
105 1dce_A Protein (RAB geranylger 99.6 6.2E-18 2.1E-22 189.6 -7.3 216 185-454 346-567 (567)
106 1m9s_A Internalin B; cell inva 99.6 4.5E-15 1.5E-19 167.4 15.5 191 68-275 23-213 (605)
107 2v9t_B SLIT homolog 2 protein 99.6 8.3E-15 2.8E-19 144.0 15.2 151 191-343 14-165 (220)
108 4ezg_A Putative uncharacterize 99.6 3.6E-15 1.2E-19 143.9 11.9 152 185-364 41-192 (197)
109 4ezg_A Putative uncharacterize 99.6 8.1E-15 2.8E-19 141.4 12.9 133 232-368 41-174 (197)
110 3e6j_A Variable lymphocyte rec 99.6 2.4E-14 8.3E-19 141.6 16.1 149 261-458 21-170 (229)
111 2v70_A SLIT-2, SLIT homolog 2 99.6 3.3E-14 1.1E-18 139.7 16.3 101 262-364 14-116 (220)
112 1dce_A Protein (RAB geranylger 99.6 3.7E-17 1.3E-21 183.3 -5.6 185 86-275 347-549 (567)
113 1xeu_A Internalin C; cellular 99.6 3.3E-15 1.1E-19 151.2 8.6 122 86-221 39-160 (263)
114 2v70_A SLIT-2, SLIT homolog 2 99.6 2.8E-14 9.6E-19 140.2 15.0 113 231-343 53-166 (220)
115 3e6j_A Variable lymphocyte rec 99.6 4.3E-14 1.5E-18 139.8 16.4 150 191-343 22-172 (229)
116 2xot_A Amphoterin-induced prot 99.6 2.1E-14 7.2E-19 152.4 14.4 173 191-365 21-201 (361)
117 1xeu_A Internalin C; cellular 99.6 8.6E-15 2.9E-19 148.0 10.7 166 187-364 18-183 (263)
118 2xot_A Amphoterin-induced prot 99.5 2.4E-14 8.2E-19 152.0 12.8 178 137-343 21-202 (361)
119 4b8c_D Glucose-repressible alc 99.5 1.3E-14 4.5E-19 167.7 4.2 142 181-324 217-359 (727)
120 4b8c_D Glucose-repressible alc 99.4 4.9E-14 1.7E-18 163.0 6.3 190 88-292 173-369 (727)
121 2ell_A Acidic leucine-rich nuc 99.4 5.7E-13 1.9E-17 124.8 11.2 105 188-294 24-132 (168)
122 2ell_A Acidic leucine-rich nuc 99.4 5.6E-13 1.9E-17 124.8 10.5 130 164-294 24-159 (168)
123 3sb4_A Hypothetical leucine ri 99.4 1.4E-12 4.9E-17 136.4 14.7 280 44-360 24-328 (329)
124 3sb4_A Hypothetical leucine ri 99.4 8.8E-13 3E-17 138.0 12.3 260 40-313 43-328 (329)
125 2je0_A Acidic leucine-rich nuc 99.4 3.8E-13 1.3E-17 123.2 8.3 128 234-362 16-149 (149)
126 2je0_A Acidic leucine-rich nuc 99.4 6.3E-13 2.2E-17 121.8 8.4 122 190-313 19-147 (149)
127 1w8a_A SLIT protein; signaling 99.4 3.2E-12 1.1E-16 122.6 13.0 127 191-319 11-139 (192)
128 1w8a_A SLIT protein; signaling 99.3 9.6E-12 3.3E-16 119.2 13.3 128 167-297 11-141 (192)
129 1a9n_A U2A', U2A'; complex (nu 99.3 4.2E-12 1.5E-16 119.8 10.4 56 67-123 20-76 (176)
130 1a9n_A U2A', U2A'; complex (nu 99.3 4.3E-12 1.5E-16 119.8 9.5 131 231-364 15-151 (176)
131 2wfh_A SLIT homolog 2 protein 99.3 2E-11 6.7E-16 117.0 13.8 122 192-316 14-136 (193)
132 2o6r_A Variable lymphocyte rec 99.3 3.5E-11 1.2E-15 113.6 14.4 130 261-438 9-138 (177)
133 2wfh_A SLIT homolog 2 protein 99.3 4E-11 1.4E-15 114.8 14.4 125 168-295 14-139 (193)
134 2o6r_A Variable lymphocyte rec 99.3 3E-11 1E-15 114.0 13.4 126 191-318 10-136 (177)
135 4fdw_A Leucine rich hypothetic 99.3 3.3E-10 1.1E-14 121.3 22.7 235 66-318 113-357 (401)
136 4fdw_A Leucine rich hypothetic 99.2 6.1E-10 2.1E-14 119.2 22.0 242 35-316 126-380 (401)
137 1ds9_A Outer arm dynein; leuci 99.2 1.6E-13 5.4E-18 132.4 -6.8 132 164-299 18-157 (198)
138 4fs7_A Uncharacterized protein 99.2 3.1E-09 1.1E-13 113.8 24.0 82 33-137 59-143 (394)
139 1ds9_A Outer arm dynein; leuci 99.1 1.2E-12 4.1E-17 126.2 -4.8 113 202-318 39-152 (198)
140 4fs7_A Uncharacterized protein 99.1 6.7E-09 2.3E-13 111.3 23.4 318 15-357 69-392 (394)
141 3g39_A Variable lymphocyte rec 99.0 1.1E-09 3.7E-14 102.5 11.2 103 261-365 11-114 (170)
142 2r9u_A Variable lymphocyte rec 99.0 1.2E-09 4.2E-14 102.5 11.3 102 262-365 15-117 (174)
143 3g39_A Variable lymphocyte rec 99.0 1.2E-09 4.2E-14 102.1 11.3 101 191-293 12-113 (170)
144 2r9u_A Variable lymphocyte rec 99.0 1.4E-09 4.6E-14 102.2 11.3 100 191-292 15-115 (174)
145 4gt6_A Cell surface protein; l 98.9 3.4E-07 1.2E-11 97.9 24.3 158 33-200 51-217 (394)
146 3un9_A NLR family member X1; l 98.8 1.8E-10 6.2E-15 122.1 -2.5 59 164-222 72-137 (372)
147 3un9_A NLR family member X1; l 98.8 1.1E-09 3.8E-14 116.0 0.7 158 187-364 71-250 (372)
148 2ifg_A High affinity nerve gro 98.7 3E-08 1E-12 104.2 10.9 103 263-366 12-116 (347)
149 4h09_A Hypothetical leucine ri 98.7 2.8E-06 9.7E-11 90.2 25.9 292 16-339 45-342 (379)
150 2ifg_A High affinity nerve gro 98.7 5E-08 1.7E-12 102.4 10.9 102 192-294 12-115 (347)
151 4gt6_A Cell surface protein; l 98.6 1.9E-06 6.6E-11 92.0 20.7 313 18-363 65-388 (394)
152 2ra8_A Uncharacterized protein 98.6 4.2E-08 1.5E-12 103.0 5.8 61 204-267 165-227 (362)
153 4h09_A Hypothetical leucine ri 98.6 1.3E-05 4.5E-10 84.9 25.2 60 277-338 212-271 (379)
154 2ra8_A Uncharacterized protein 98.5 7.4E-08 2.5E-12 101.1 6.2 156 206-364 134-318 (362)
155 1io0_A Tropomodulin; LRR prote 97.9 4.7E-06 1.6E-10 78.7 3.1 39 184-222 61-104 (185)
156 1io0_A Tropomodulin; LRR prote 97.8 5.6E-06 1.9E-10 78.1 2.8 114 231-364 32-162 (185)
157 3e4g_A ATP synthase subunit S, 97.7 2.1E-05 7.2E-10 72.6 4.1 87 282-368 61-154 (176)
158 3e4g_A ATP synthase subunit S, 97.7 2.8E-05 9.5E-10 71.8 4.4 86 236-321 62-154 (176)
159 3rw6_A Nuclear RNA export fact 97.6 7.6E-06 2.6E-10 81.4 0.3 63 256-320 167-234 (267)
160 3rw6_A Nuclear RNA export fact 97.4 0.00011 3.7E-09 73.1 5.1 79 233-312 168-257 (267)
161 3rfe_A Platelet glycoprotein I 95.7 0.015 5.3E-07 50.7 6.0 52 70-122 12-66 (130)
162 3rfe_A Platelet glycoprotein I 95.6 0.015 5E-07 50.8 5.5 54 48-101 11-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 95.5 0.011 3.9E-07 55.3 4.6 63 230-292 65-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 95.4 0.011 3.8E-07 55.4 4.2 40 183-222 65-109 (197)
165 2lz0_A Uncharacterized protein 34.5 39 0.0013 27.2 4.1 45 99-143 7-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7e-42 Score=401.16 Aligned_cols=460 Identities=19% Similarity=0.171 Sum_probs=331.5
Q ss_pred hcCCCCcceEEecCccccCccc-ccCcCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCcc-ccccccccccCCcEEE
Q 005207 41 FSLMTNLGLLKINNVQLLEGLE-YLSNKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIE-ELWKGIKHLNMLKVMK 117 (709)
Q Consensus 41 f~~l~~L~~L~l~~~~l~~~~~-~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 117 (709)
+.++++|+.|++++|.+.+... .-..+|++|++++|.+...+..+ .+++|++|++++|+++ .+|..+..+++|++|+
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEE
T ss_pred hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEE
Confidence 6677777777777777664322 11258888899888887644445 7888999999999888 5667788888888888
Q ss_pred cCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccc-cc------------------cccCCCccEEEccCCCCCC
Q 005207 118 LSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLH-NK------------------LIFVESLKILILSGCLKLR 178 (709)
Q Consensus 118 Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l-~~------------------L~~l~~L~~L~Ls~~~~~~ 178 (709)
|++|++....|.. .+++|++|++++|.....+|..++.. .+ +..+++|++|++++|.+.+
T Consensus 254 Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 254 ISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp CCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC
Confidence 8888776555544 66666666666664333455444332 21 2234677777777777776
Q ss_pred cCCcc-ccCCCccceeeccCCCcc-ccCcccccCC-C--------------------------CcEEecCCCCCCCcCcc
Q 005207 179 KFPHV-VGSMECLQELLLDGTDIK-ELPLSIEHLF-G--------------------------LVQLTLNDCKNLSSLPV 229 (709)
Q Consensus 179 ~~~~~-l~~l~~L~~L~l~~~~i~-~lp~~l~~l~-~--------------------------L~~L~L~~~~~l~~lp~ 229 (709)
.+|.. +..+++|++|++++|.+. .+|..+..+. + |+.|++++|...+.+|.
T Consensus 333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 412 (768)
T 3rgz_A 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412 (768)
T ss_dssp ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence 66654 777777777777777776 5666555544 4 55555555544445666
Q ss_pred cccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCc-ccCcccCCCCCCCEEeccCCCCCccccccccCCCCC
Q 005207 230 AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSL 308 (709)
Q Consensus 230 ~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L 308 (709)
.+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+..+++|
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 7777788888888888777777888888888888888888887 667778888888888888888888888888888888
Q ss_pred CEEEeeCcCCCccCCccccCCCccceeeccccccc-cCCcccccccCCcEEEccCCCCCCCCCccccccccc--------
Q 005207 309 KTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFN-------- 379 (709)
Q Consensus 309 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~-------- 379 (709)
++|++++|.+.+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|......+.........
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 88888888888888888888888888888888887 778888888888888888887543322211100000
Q ss_pred -----------------------cc-----------------cCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCC
Q 005207 380 -----------------------LM-----------------GKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSD 419 (709)
Q Consensus 380 -----------------------~~-----------------~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~ 419 (709)
.. .......+...+.+..+++|+.|+|++|+++ +.+|..
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~ 651 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS-GYIPKE 651 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB-SCCCGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc-ccCCHH
Confidence 00 0001122233345788999999999999996 789999
Q ss_pred CCCCCCCCEEEcCCCCCc-ccChhhhcCCCcCeeccccccccccCCCC---CCCccEEEecCCCCcceecCccccccccC
Q 005207 420 IGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQL---PPNIIFVKVNGCSSLVTLLGALKLCKSNG 495 (709)
Q Consensus 420 l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~sL~~L~i~~C~~L~~l~~~~~~~~l~~ 495 (709)
++.+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+....+|.. .++|++|++++++--..++....+..+..
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~ 731 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCG
T ss_pred HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCH
Confidence 999999999999999999 89999999999999999999877788753 25789999998865455554433333333
Q ss_pred ccccccc
Q 005207 496 IVIECID 502 (709)
Q Consensus 496 l~~~~c~ 502 (709)
..|..++
T Consensus 732 ~~~~gN~ 738 (768)
T 3rgz_A 732 AKFLNNP 738 (768)
T ss_dssp GGGCSCT
T ss_pred HHhcCCc
Confidence 3344433
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-41 Score=399.21 Aligned_cols=414 Identities=24% Similarity=0.280 Sum_probs=304.1
Q ss_pred hhhcCCCCcceEEecCccccCcccc-cCcCccEEEeeCCCCC-CCCCcC-C-cCCceEEEcccCCcc-ccccccccccCC
Q 005207 39 KAFSLMTNLGLLKINNVQLLEGLEY-LSNKLRLLDWHRYPLK-SLPSNL-Q-LDKIVEFKMCYSRIE-ELWKGIKHLNML 113 (709)
Q Consensus 39 ~~f~~l~~L~~L~l~~~~l~~~~~~-l~~~L~~L~l~~~~l~-~lp~~~-~-l~~L~~L~Ls~n~i~-~l~~~~~~l~~L 113 (709)
.+|.++++|+.|++++|.+.+.+.. ..++|++|++++|.++ .+|..+ . +++|++|++++|+++ .+|..+..+++|
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 320 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTC
T ss_pred HHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCc
Confidence 3444444444444444443321111 1134555555555544 444444 2 355666666665555 344555566666
Q ss_pred cEEEcCCCCCCCCCC-C-CCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccC--CCc
Q 005207 114 KVMKLSHSENLIKTP-D-FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGS--MEC 189 (709)
Q Consensus 114 ~~L~Ls~~~~~~~~~-~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~--l~~ 189 (709)
++|+|++|++....| . +..+++|++|++++|.....+|..+..+. ++|++|++++|.+.+.+|..+.. +++
T Consensus 321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-----~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS-----ASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHT-----TTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhh-----cCCcEEEccCCCcCCCcChhhhhcccCC
Confidence 666666665543333 2 55566666666666533334444443321 27888888888887777777666 788
Q ss_pred cceeeccCCCcc-ccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccC
Q 005207 190 LQELLLDGTDIK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 268 (709)
Q Consensus 190 L~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~ 268 (709)
|++|++++|.+. .+|..+..+++|+.|++++|...+.+|..++++++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 999999999888 7888899999999999999888888888899999999999999999888999999999999999999
Q ss_pred ccCc-ccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc-cCC
Q 005207 269 TSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPP 346 (709)
Q Consensus 269 ~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~-~l~ 346 (709)
|.+. .+|..+..+++|+.|++++|.+.+.+|.+++.+++|++|++++|.+.+.+|..++.+++|+.|++++|.+. .+|
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 9998 67888899999999999999998899999999999999999999998899999999999999999999887 566
Q ss_pred ccccc----------------------------------------------------------------------ccCCc
Q 005207 347 SSVFL----------------------------------------------------------------------MKNLR 356 (709)
Q Consensus 347 ~~~~~----------------------------------------------------------------------l~~L~ 356 (709)
..++. +++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 55443 34455
Q ss_pred EEEccCCCCCCCCCccccccccccccCccccccccCCC-CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCC
Q 005207 357 TLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS-LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNN 435 (709)
Q Consensus 357 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 435 (709)
.|++++|+... .+|. ++.+++|+.|+|++|+++ +.+|..++.+++|+.|+|++|+
T Consensus 636 ~LdLs~N~l~g-----------------------~ip~~l~~l~~L~~L~Ls~N~l~-g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 636 FLDMSYNMLSG-----------------------YIPKEIGSMPYLFILNLGHNDIS-GSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp EEECCSSCCBS-----------------------CCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECcCCcccc-----------------------cCCHHHhccccCCEEeCcCCccC-CCCChHHhCCCCCCEEECCCCc
Confidence 55555554221 2333 889999999999999996 8899999999999999999999
Q ss_pred Cc-ccChhhhcCCCcCeeccccccccccCCCCC--CCccEEEecCCCCc
Q 005207 436 FV-TLPASINSLLNLKELEMEDCKRLQFLPQLP--PNIIFVKVNGCSSL 481 (709)
Q Consensus 436 l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~sL~~L~i~~C~~L 481 (709)
++ .+|..+..+++|+.|+|++|+....+|... .++....+.+++.|
T Consensus 692 l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp CEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred ccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchh
Confidence 99 899999999999999999999888888642 23333344455443
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.8e-40 Score=374.17 Aligned_cols=335 Identities=18% Similarity=0.194 Sum_probs=214.3
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccC----cccccCcCccEEEeeCCCCCCCCC-cC-CcCCc
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKI 90 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L 90 (709)
..++.+.+..+ . ...+.+.+|.++++|++|++++|.+.+ .+..+ .+|++|++++|.++.++. .+ .+++|
T Consensus 33 ~~l~~L~Ls~n-~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFN-V---LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ-HRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTC-C---CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CcCcEEEccCC-c---cCcCChhHhccCccceEEECCCCccceeChhhccCc-cccCeeeCCCCcccccChhhhcccccc
Confidence 45777777777 4 446778899999999999999998753 34455 599999999999988754 45 89999
Q ss_pred eEEEcccCCcccc-ccccccccCCcEEEcCCCCCCCC-CCCCCCCCCccEEeccCCcccccc-CcccccccccccCCCcc
Q 005207 91 VEFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSENLIK-TPDFTEAPNLEELYLEGCTKLRKV-HPSLLLHNKLIFVESLK 167 (709)
Q Consensus 91 ~~L~Ls~n~i~~l-~~~~~~l~~L~~L~Ls~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~~-~~~i~~l~~L~~l~~L~ 167 (709)
++|++++|+++.+ +..+..+++|++|++++|++... .+.+..+++|++|++++|. +..+ +..++.+ ++|+
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l------~~L~ 180 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSL------QQAT 180 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTT------TTCC
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhh------cccc
Confidence 9999999999987 57799999999999999998774 4677779999999999984 4444 3334433 3333
Q ss_pred --EEEccCCCCCCcCCccccC-------------------------------------------------C--Cccceee
Q 005207 168 --ILILSGCLKLRKFPHVVGS-------------------------------------------------M--ECLQELL 194 (709)
Q Consensus 168 --~L~Ls~~~~~~~~~~~l~~-------------------------------------------------l--~~L~~L~ 194 (709)
.|++++|.+.+..|..+.. + .+|+.|+
T Consensus 181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~ 260 (606)
T 3t6q_A 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260 (606)
T ss_dssp SEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred eeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence 4455554444333322211 0 0455555
Q ss_pred ccCCCccccCcc-cccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCc-
Q 005207 195 LDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT- 272 (709)
Q Consensus 195 l~~~~i~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~- 272 (709)
+++|.+..++.. +..+++|+.|++++|. +..+|..+.++++|++|++++|.+....|..+..+++|++|++++|.+.
T Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 339 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339 (606)
T ss_dssp CTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred eecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence 555555554433 5555666666666553 3355555555666666666666555555555556666666666666554
Q ss_pred ccCcc-cCCCCCCCEEeccCCCCCccc--cccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCC--c
Q 005207 273 EVPSS-IELLPGLELLNLNDCKNFARV--PSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP--S 347 (709)
Q Consensus 273 ~l~~~-~~~l~~L~~L~L~~~~~~~~l--~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~--~ 347 (709)
.++.. +..+++|+.|++++|.+.+.. +..+..+++|++|++++|...+..+..+..+++|+.|++++|.+...+ .
T Consensus 340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 34332 555666666666665554443 445555666666666666555555555555666666666666555332 2
Q ss_pred ccccccCCcEEEccCCC
Q 005207 348 SVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 348 ~~~~l~~L~~L~L~~~~ 364 (709)
.+..+++|++|++++|.
T Consensus 420 ~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp TTTTCTTCCEEECTTCC
T ss_pred hhhCcccCCEEECCCCc
Confidence 24555666666666555
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-38 Score=365.11 Aligned_cols=425 Identities=21% Similarity=0.229 Sum_probs=350.2
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccCc----ccccCcCccEEEeeCCCCCCC-CCcC-CcCCc
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEG----LEYLSNKLRLLDWHRYPLKSL-PSNL-QLDKI 90 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~~----~~~l~~~L~~L~l~~~~l~~l-p~~~-~l~~L 90 (709)
..++.+.+..+ . ...+.+.+|.++++|+.|++++|.+.+. +..+ ++|++|++++|.++.+ |..+ .+++|
T Consensus 32 ~~l~~L~Ls~n-~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFN-P---LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp TTCCEEECTTS-C---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCcCEEECCCC-C---cCEeChhhccCCccCcEEeCCCCcccccCHHHhhch-hhcCEeECCCCcccccChhhcCCcccC
Confidence 56788888777 3 4567778999999999999999987642 3444 5999999999999998 5566 89999
Q ss_pred eEEEcccCCccccc-cccccccCCcEEEcCCCCCCC-C-CCCCCCCCCccEEeccCCcccccc-Cccccccccccc----
Q 005207 91 VEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLI-K-TPDFTEAPNLEELYLEGCTKLRKV-HPSLLLHNKLIF---- 162 (709)
Q Consensus 91 ~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~-~-~~~~~~l~~L~~L~L~~~~~l~~~-~~~i~~l~~L~~---- 162 (709)
++|++++|.++.++ ..+..+++|++|++++|.+.. . +..++++++|++|++++|. +..+ +..++.+.+++.
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCE
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccce
Confidence 99999999999887 679999999999999999875 3 3459999999999999984 4444 444544443321
Q ss_pred -----------------CCCccEEEccCCCCC------------------------------------------------
Q 005207 163 -----------------VESLKILILSGCLKL------------------------------------------------ 177 (709)
Q Consensus 163 -----------------l~~L~~L~Ls~~~~~------------------------------------------------ 177 (709)
..+|+.|++++|.+.
T Consensus 186 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 265 (606)
T 3vq2_A 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265 (606)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEE
T ss_pred eeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhh
Confidence 136778888777542
Q ss_pred ----------CcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCC
Q 005207 178 ----------RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSK 247 (709)
Q Consensus 178 ----------~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~ 247 (709)
+..|. +..+++|+.|+++++.+..+| .+..+++|+.|++++|.. +.+|. + .+++|++|++++|..
T Consensus 266 l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 266 FRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp EEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSS
T ss_pred eeccccccccccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcC
Confidence 12222 566789999999999999999 899999999999999887 88884 6 899999999999976
Q ss_pred CCcCchhhccCCCCCeeeccCccCccc---CcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCC-
Q 005207 248 LKKFPQIVTTMEDLSELNLDGTSITEV---PSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP- 323 (709)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~L~~~~i~~l---~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~- 323 (709)
.... .+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+. .+|..+..+++|++|++++|...+..+
T Consensus 341 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp CEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred ccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccCh
Confidence 6544 567899999999999999866 778899999999999999854 467888999999999999999888777
Q ss_pred ccccCCCccceeecccccccc-CCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCC-CCCCCCCC
Q 005207 324 DTLGQVESLEELDISETAVRR-PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLP-SLSGLRSL 401 (709)
Q Consensus 324 ~~l~~l~~L~~L~L~~n~i~~-l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp-~l~~l~~L 401 (709)
..+..+++|+.|++++|.+.. .|..+..+++|++|++++|.... ..+| .+..+++|
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~~~~~~l~~L 475 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD----------------------NTLSNVFANTTNL 475 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG----------------------GEECSCCTTCTTC
T ss_pred hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC----------------------cchHHhhccCCCC
Confidence 688899999999999999985 56778889999999999987321 1122 27889999
Q ss_pred CEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccc-ChhhhcCCCcCeeccccccccccCCC----CCCCccEEEec
Q 005207 402 TKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQFLPQ----LPPNIIFVKVN 476 (709)
Q Consensus 402 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~----lp~sL~~L~i~ 476 (709)
+.|++++|++. +..|..+..+++|++|++++|+++.+ |..+..+++|+.|+|++|+ ++.+|. +|.+|+.|+++
T Consensus 476 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 476 TFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLT 553 (606)
T ss_dssp CEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECC
T ss_pred CEEECCCCcCC-ccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEcc
Confidence 99999999996 66788899999999999999999966 7789999999999999996 667775 55678888888
Q ss_pred CCC
Q 005207 477 GCS 479 (709)
Q Consensus 477 ~C~ 479 (709)
+++
T Consensus 554 ~N~ 556 (606)
T 3vq2_A 554 NNS 556 (606)
T ss_dssp SCC
T ss_pred CCC
Confidence 865
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.6e-40 Score=375.79 Aligned_cols=424 Identities=15% Similarity=0.190 Sum_probs=277.3
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccCcc--c-------ccC----cCccEEEeeCCCCCC-CC
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGL--E-------YLS----NKLRLLDWHRYPLKS-LP 82 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~~~--~-------~l~----~~L~~L~l~~~~l~~-lp 82 (709)
.+|++|.|... .. ...++ .+|.++++|+.|++++|.+..+. . .+| ..|| ++++.+.+.. +|
T Consensus 81 ~~V~~L~L~~~-~l--~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~ 155 (636)
T 4eco_A 81 GRVTGLSLEGF-GA--SGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPR 155 (636)
T ss_dssp CCEEEEECTTS-CC--EEEEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGG
T ss_pred CCEEEEEecCc-cc--CCcCC-hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHH-hhHHHhhhccCch
Confidence 46888888777 54 45565 79999999999999999752110 0 011 1222 2222222111 11
Q ss_pred CcC--------------------CcCCceEEEc--ccCCccccccccccccCCcEEEcCCCCCCC---------------
Q 005207 83 SNL--------------------QLDKIVEFKM--CYSRIEELWKGIKHLNMLKVMKLSHSENLI--------------- 125 (709)
Q Consensus 83 ~~~--------------------~l~~L~~L~L--s~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~--------------- 125 (709)
..+ ....++.+.+ .+|+++.+|..+.++++|++|+|++|.+..
T Consensus 156 ~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp GGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 110 0011111111 145566666667777777777777777665
Q ss_pred ---CCCCCC--CCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCC-CCC-cCCccccCC------Cccce
Q 005207 126 ---KTPDFT--EAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCL-KLR-KFPHVVGSM------ECLQE 192 (709)
Q Consensus 126 ---~~~~~~--~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~-~~~-~~~~~l~~l------~~L~~ 192 (709)
.++.++ ++++|++|++++|.....+|..++. +++|++|++++|. +.+ .+|..++.+ ++|++
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA------LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT------CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHhc------CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 344566 6777777777776555566655444 4566677777776 555 566666554 77777
Q ss_pred eeccCCCccccCc--ccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCC-CCeeeccCc
Q 005207 193 LLLDGTDIKELPL--SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMED-LSELNLDGT 269 (709)
Q Consensus 193 L~l~~~~i~~lp~--~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~-L~~L~L~~~ 269 (709)
|++++|.++.+|. .++.+++|+.|++++|...+.+| .++.+++|++|++++|.+. .+|..+..+++ |++|++++|
T Consensus 310 L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp EECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred EECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence 7777777777777 67777777777777766655667 6777777777777777665 66666777777 777777777
Q ss_pred cCcccCcccCCCC--CCCEEeccCCCCCcccccccc-------CCCCCCEEEeeCcCCCccCCccccCCCccceeecccc
Q 005207 270 SITEVPSSIELLP--GLELLNLNDCKNFARVPSSIN-------GLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340 (709)
Q Consensus 270 ~i~~l~~~~~~l~--~L~~L~L~~~~~~~~l~~~~~-------~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 340 (709)
.++.+|..+...+ +|+.|++++|.+.+..|..+. .+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 388 ~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred cCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence 7777777665544 777788877777777777666 6677788888877766333333455777888888888
Q ss_pred ccccCCccccccc--------CCcEEEccCCCCCCCCCccccccccccccCccccccccCCC-CC--CCCCCCEEeccCC
Q 005207 341 AVRRPPSSVFLMK--------NLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS-LS--GLRSLTKLDLSDC 409 (709)
Q Consensus 341 ~i~~l~~~~~~l~--------~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-l~--~l~~L~~L~Ls~n 409 (709)
.++.+|....... +|++|++++|.... +|. +. .+++|+.|+|++|
T Consensus 468 ~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------------lp~~~~~~~l~~L~~L~Ls~N 523 (636)
T 4eco_A 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK------------------------LSDDFRATTLPYLVGIDLSYN 523 (636)
T ss_dssp CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCB------------------------CCGGGSTTTCTTCCEEECCSS
T ss_pred CCCCcCHHHhccccccccccCCccEEECcCCcCCc------------------------cChhhhhccCCCcCEEECCCC
Confidence 7777776554422 78888888776431 122 33 6778888888888
Q ss_pred CCCCCCCCCCCCCCCCCCEEEcCC------CCCc-ccChhhhcCCCcCeeccccccccccCCC-CCCCccEEEecCCCC
Q 005207 410 GLGEGAIPSDIGNLHSLNELYLSK------NNFV-TLPASINSLLNLKELEMEDCKRLQFLPQ-LPPNIIFVKVNGCSS 480 (709)
Q Consensus 410 ~l~~~~~~~~l~~l~~L~~L~L~~------n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~-lp~sL~~L~i~~C~~ 480 (709)
++.. +|..+..+++|+.|+|++ |++. .+|..+..+++|+.|+|++|.. +.+|. ++++|+.|++++++-
T Consensus 524 ~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 524 SFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp CCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTT
T ss_pred CCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCC
Confidence 8753 777777788888888843 4444 6777777888888888888865 77775 567788888887753
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-38 Score=370.90 Aligned_cols=422 Identities=16% Similarity=0.213 Sum_probs=281.4
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEe-cCccccCcccccCcCc------------cE------E------
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKI-NNVQLLEGLEYLSNKL------------RL------L------ 71 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l-~~~~l~~~~~~l~~~L------------~~------L------ 71 (709)
.+|++|.|... .. ...++ .+|.++++|+.|++ ++|.+.+....-...+ |. +
T Consensus 323 ~~V~~L~Ls~~-~L--~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~ 398 (876)
T 4ecn_A 323 GRVTGLSLAGF-GA--KGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398 (876)
T ss_dssp SCEEEEECTTT-CC--EEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred CCEEEEECccC-CC--CCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence 56888887777 54 45565 79999999999999 8887765411000000 00 0
Q ss_pred --------EeeCCC-CCCCCCcCCcCCceEEEccc--CCccccccccccccCCcEEEcCCCCCCC---------------
Q 005207 72 --------DWHRYP-LKSLPSNLQLDKIVEFKMCY--SRIEELWKGIKHLNMLKVMKLSHSENLI--------------- 125 (709)
Q Consensus 72 --------~l~~~~-l~~lp~~~~l~~L~~L~Ls~--n~i~~l~~~~~~l~~L~~L~Ls~~~~~~--------------- 125 (709)
.+..++ ...+. ......++.+.+.. |+++.+|..+.++++|+.|+|++|++..
T Consensus 399 ~~s~l~~~~l~~~~~~~~i~-~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~ 477 (876)
T 4ecn_A 399 NLSDLLQDAINRNPEMKPIK-KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477 (876)
T ss_dssp GSCHHHHHHHHTCTTSCCCC-CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hhhHHHHHHhhhCccccccc-cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccc
Confidence 000000 00000 00122233333332 5666677777777777777777777666
Q ss_pred ---CCCCCC--CCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCC-CCC-cCCccccCCC-------ccc
Q 005207 126 ---KTPDFT--EAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCL-KLR-KFPHVVGSME-------CLQ 191 (709)
Q Consensus 126 ---~~~~~~--~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~-~~~-~~~~~l~~l~-------~L~ 191 (709)
.++.++ ++++|++|+|++|.....+|..++. +++|++|++++|. +.+ .+|..++.++ +|+
T Consensus 478 ~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~------L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~ 551 (876)
T 4ecn_A 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD------LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551 (876)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG------CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC
T ss_pred cccCChhhhhccCCCCCEEECcCCCCCccChHHHhC------CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCcc
Confidence 344455 7777777777777656666655444 5667777777776 555 5665554443 777
Q ss_pred eeeccCCCccccCc--ccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCC-CCeeeccC
Q 005207 192 ELLLDGTDIKELPL--SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMED-LSELNLDG 268 (709)
Q Consensus 192 ~L~l~~~~i~~lp~--~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~-L~~L~L~~ 268 (709)
.|++++|.+..+|. .++++++|+.|++++|... .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|+|++
T Consensus 552 ~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp EEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCS
T ss_pred EEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcC
Confidence 77777777777777 7777777888888776654 677 6777778888888877766 66777777777 88888888
Q ss_pred ccCcccCcccCCCCC--CCEEeccCCCCCcccccc---cc--CCCCCCEEEeeCcCCCccCCccc-cCCCccceeecccc
Q 005207 269 TSITEVPSSIELLPG--LELLNLNDCKNFARVPSS---IN--GLKSLKTLNLSGCCKLENVPDTL-GQVESLEELDISET 340 (709)
Q Consensus 269 ~~i~~l~~~~~~l~~--L~~L~L~~~~~~~~l~~~---~~--~l~~L~~L~L~~~~~~~~~~~~l-~~l~~L~~L~L~~n 340 (709)
|.+..+|..+..++. |+.|++++|.+.+.+|.. +. .+++|+.|++++|.+. .+|..+ ..+++|+.|++++|
T Consensus 629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC
T ss_pred CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC
Confidence 887777776666544 888888888776655432 22 2347888888887766 445443 46778888888888
Q ss_pred ccccCCcccccc--------cCCcEEEccCCCCCCCCCccccccccccccCccccccccCCC-CC--CCCCCCEEeccCC
Q 005207 341 AVRRPPSSVFLM--------KNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPS-LS--GLRSLTKLDLSDC 409 (709)
Q Consensus 341 ~i~~l~~~~~~l--------~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-l~--~l~~L~~L~Ls~n 409 (709)
.+..+|..+... ++|+.|+|++|+... +|. +. .+++|+.|+|++|
T Consensus 708 ~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~------------------------lp~~l~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS------------------------LSDDFRATTLPYLSNMDVSYN 763 (876)
T ss_dssp CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC------------------------CCGGGSTTTCTTCCEEECCSS
T ss_pred cCCccChHHhccccccccccCCccEEECCCCCCcc------------------------chHHhhhccCCCcCEEEeCCC
Confidence 888777665542 378888888876431 122 33 6778888888888
Q ss_pred CCCCCCCCCCCCCCCCCCEEEcCC------CCCc-ccChhhhcCCCcCeeccccccccccCCC-CCCCccEEEecCCCC
Q 005207 410 GLGEGAIPSDIGNLHSLNELYLSK------NNFV-TLPASINSLLNLKELEMEDCKRLQFLPQ-LPPNIIFVKVNGCSS 480 (709)
Q Consensus 410 ~l~~~~~~~~l~~l~~L~~L~L~~------n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~-lp~sL~~L~i~~C~~ 480 (709)
++.. +|..+..+++|+.|+|++ |++. .+|..+..+++|+.|+|++|+. ..+|. ++++|+.|++++|+-
T Consensus 764 ~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 764 CFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp CCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTT
T ss_pred CCCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCC
Confidence 8853 777788888888888866 5544 6777888888888888888865 77776 667888888888873
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-36 Score=348.07 Aligned_cols=383 Identities=20% Similarity=0.201 Sum_probs=274.9
Q ss_pred CcceEEecCccccC----cccccCcCccEEEeeCCCCCCCC-CcC-CcCCceEEEcccCCcccc-ccccccccCCcEEEc
Q 005207 46 NLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLP-SNL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKL 118 (709)
Q Consensus 46 ~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp-~~~-~l~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~L 118 (709)
+++.|++++|.+.+ .+..+ ++|++|++++|.+..++ ..+ .+++|++|+|++|+++.+ |..+..+++|++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccCcCChhHhccC-ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 57888888887653 23344 47888888888887764 444 788888888888888766 467788888888888
Q ss_pred CCCCCCCCC-CCCCCCCCccEEeccCCccccccC-cccccccccccCCCccEEEccCCCCCCcCCccccCCCccc--eee
Q 005207 119 SHSENLIKT-PDFTEAPNLEELYLEGCTKLRKVH-PSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQ--ELL 194 (709)
Q Consensus 119 s~~~~~~~~-~~~~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~--~L~ 194 (709)
++|++.... ..++++++|++|++++|. +..++ +.+. .+++|++|++++|.+.+..+..++.+++|+ .|+
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGF------PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTC------CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEE
T ss_pred cccCcccCCcchhccCCcccEEECCCCc-ccccCccccc------CCcccCEEEcccCcccccChhhhhhhcccceeEEe
Confidence 888776653 457788888888888873 44332 1111 257788888888888777777788888888 788
Q ss_pred ccCCCccccCcccccCCCCcEEecCCCCCCCcC--------------------------cccccCCc--cCcEEeeeCCC
Q 005207 195 LDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSL--------------------------PVAISSFQ--CLRNLKLSGCS 246 (709)
Q Consensus 195 l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~l--------------------------p~~l~~l~--~L~~L~Ls~~~ 246 (709)
+++|.+..++.......+|+.|++++|...... +..+..+. +|+.|++++|.
T Consensus 186 l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~ 265 (606)
T 3t6q_A 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265 (606)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC
T ss_pred cCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc
Confidence 888888877766666677788887776421110 11122222 78899999998
Q ss_pred CCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCc-c
Q 005207 247 KLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD-T 325 (709)
Q Consensus 247 ~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~ 325 (709)
+....+..+..+++|++|++++|.++++|..+..+++|++|++++|.+.+..|..+..+++|++|++++|...+.++. .
T Consensus 266 l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 266 FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 888888889999999999999999999999999999999999999998888888899999999999999988866654 4
Q ss_pred ccCCCccceeeccccccccC---CcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCC
Q 005207 326 LGQVESLEELDISETAVRRP---PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLT 402 (709)
Q Consensus 326 l~~l~~L~~L~L~~n~i~~l---~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~ 402 (709)
++.+++|++|++++|.+..+ +..+..+++|++|++++|...... ...+..+++|+
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------~~~~~~l~~L~ 403 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK----------------------TEAFKECPQLE 403 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC----------------------TTTTTTCTTCS
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC----------------------HHHhcCCccCC
Confidence 88899999999999998865 567888999999999998743211 11144555555
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccc-ChhhhcCCCcCeecccccc
Q 005207 403 KLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCK 458 (709)
Q Consensus 403 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~ 458 (709)
.|++++|++.....+..+..+++|++|++++|.+... |..+..+++|++|++++|+
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 5555555554222233355555555555555555532 3344555555555555554
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.2e-36 Score=349.34 Aligned_cols=473 Identities=18% Similarity=0.153 Sum_probs=288.7
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccCc----ccccCcCccEEEeeCCCCCCCCCc-C-CcCCc
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEG----LEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKI 90 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~~----~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 90 (709)
..++.+.+..+ . ...+.+.+|.++++|+.|++++|.+.+. +..+ ++|++|++++|.++.+|.. + .+++|
T Consensus 25 ~~l~~L~Ls~n-~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHN-Q---LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSS-C---CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHC-TTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEECCCC-C---CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcc-cCcCEEECCCCccCccChhhhccCCCC
Confidence 57888888877 4 3457778899999999999999987643 3344 5899999999999999974 5 89999
Q ss_pred eEEEcccCCccccc-cccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCccE
Q 005207 91 VEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKI 168 (709)
Q Consensus 91 ~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~ 168 (709)
++|++++|+++.++ ..+..+++|++|+|++|.+....+ .+.++++|++|++++|. +..+++..... ..+++|++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~---~~~~~L~~ 175 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDI---FANSSLKK 175 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGG---GTTCEESE
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhc---cccccccE
Confidence 99999999999887 568999999999999998876655 47889999999999873 44443321110 11345555
Q ss_pred EEccCCCCCCcCCcc---------------------------------------------------ccCCCc--cceeec
Q 005207 169 LILSGCLKLRKFPHV---------------------------------------------------VGSMEC--LQELLL 195 (709)
Q Consensus 169 L~Ls~~~~~~~~~~~---------------------------------------------------l~~l~~--L~~L~l 195 (709)
|++++|.+.+..|.. +..++. |+.|++
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 666655555444443 333322 444444
Q ss_pred cCCCccccC-cccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCC-----cCch----hhccCCCCCeee
Q 005207 196 DGTDIKELP-LSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLK-----KFPQ----IVTTMEDLSELN 265 (709)
Q Consensus 196 ~~~~i~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~-----~~~~----~~~~l~~L~~L~ 265 (709)
++|.+..++ ..+..+++|+.|++++|...+..|..+.++++|++|++++|.... .+|. .+..+++|++|+
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 444444332 234444444444444444443344444444444444444432211 1111 344455555555
Q ss_pred ccCccCcccCc-ccCCCCCCCEEeccCCCCCc-ccc-ccccC--CCCCCEEEeeCcCCCccCCccccCCCccceeecccc
Q 005207 266 LDGTSITEVPS-SIELLPGLELLNLNDCKNFA-RVP-SSING--LKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340 (709)
Q Consensus 266 L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~-~l~-~~~~~--l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 340 (709)
+++|.+..++. .+..+++|++|++++|.... .++ ..+.. .++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus 336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 415 (680)
T 1ziw_A 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415 (680)
T ss_dssp CCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC
Confidence 55555554332 34555555555555543211 111 11111 134555555555555555666777777888888777
Q ss_pred ccc-cCC-cccccccCCcEEEccCCCCCCCCCccc-cccccccccCcc-ccc--cccCCCCCCCCCCCEEeccCCCCCCC
Q 005207 341 AVR-RPP-SSVFLMKNLRTLSFSGCNGPPSSASWH-LHLPFNLMGKSS-CLV--ALMLPSLSGLRSLTKLDLSDCGLGEG 414 (709)
Q Consensus 341 ~i~-~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~--~~~lp~l~~l~~L~~L~Ls~n~l~~~ 414 (709)
.+. .+| ..+..+++|++|++++|+......... ............ ... +.....+..+++|+.|++++|++. +
T Consensus 416 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~ 494 (680)
T 1ziw_A 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA-N 494 (680)
T ss_dssp CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC-C
T ss_pred cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC-c
Confidence 776 344 456667777777777776322111100 000000000000 011 112233788899999999999986 5
Q ss_pred CCCCCCCCCCCCCEEEcCCCCCcccCh---------hhhcCCCcCeeccccccccccCCC--C--CCCccEEEecCCCCc
Q 005207 415 AIPSDIGNLHSLNELYLSKNNFVTLPA---------SINSLLNLKELEMEDCKRLQFLPQ--L--PPNIIFVKVNGCSSL 481 (709)
Q Consensus 415 ~~~~~l~~l~~L~~L~L~~n~l~~lp~---------~i~~l~~L~~L~L~~c~~L~~lp~--l--p~sL~~L~i~~C~~L 481 (709)
..+..+..+++|++|++++|+++.++. .+..+++|+.|++++|. ++.+|. + -++|+.|+++++ .|
T Consensus 495 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l 572 (680)
T 1ziw_A 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFELKIIDLGLN-NL 572 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHcccccCcceeECCCC-CC
Confidence 556678899999999999999886532 26788999999999984 556664 2 257888888665 56
Q ss_pred ceecCcc--ccccccCcccccc
Q 005207 482 VTLLGAL--KLCKSNGIVIECI 501 (709)
Q Consensus 482 ~~l~~~~--~~~~l~~l~~~~c 501 (709)
+.++... ...+++.+++.++
T Consensus 573 ~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 573 NTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTS
T ss_pred CcCCHhHhCCCCCCCEEECCCC
Confidence 6665432 3345555666554
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-36 Score=348.06 Aligned_cols=379 Identities=17% Similarity=0.126 Sum_probs=219.0
Q ss_pred CCcceEEecCccccC----cccccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCcccc-ccccccccCCcEEE
Q 005207 45 TNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMK 117 (709)
Q Consensus 45 ~~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~ 117 (709)
++|+.|++++|.+.+ .+..+ ++|++|++++|.++.++. .+ .+++|++|+|++|.++.+ |..+.++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNF-SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCC-ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 678888888888653 23344 588888888888888754 44 788888888888888877 67788888888888
Q ss_pred cCCCCCCCCC-CCCCCCCCccEEeccCCcccc-ccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccc----
Q 005207 118 LSHSENLIKT-PDFTEAPNLEELYLEGCTKLR-KVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQ---- 191 (709)
Q Consensus 118 Ls~~~~~~~~-~~~~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~---- 191 (709)
|++|++.... ..++++++|++|++++|.... .+|..++. +++|++|++++|.+.+..+..++.+++|+
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN------LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT------CTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhh------cCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence 8888876665 358888888888888874322 34554444 67788888888888777777776666554
Q ss_pred eeeccCCCccccCcccccCCCCcEEecCCCCCC-CcCccc----------------------------------------
Q 005207 192 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL-SSLPVA---------------------------------------- 230 (709)
Q Consensus 192 ~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l-~~lp~~---------------------------------------- 230 (709)
+|++++|.++.++.......+|+.|++++|... ...|..
T Consensus 185 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 264 (606)
T 3vq2_A 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred eeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence 688888888877776666667888888776543 112222
Q ss_pred ----------------ccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCC
Q 005207 231 ----------------ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKN 294 (709)
Q Consensus 231 ----------------l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~ 294 (709)
+..+++|+.|++++|.+.. +| .+..+++|++|++++|.+..+| .+ .+++|+.|++++|..
T Consensus 265 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp EEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSS
T ss_pred heeccccccccccccccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcC
Confidence 2333444444444443321 22 3344444444444444444444 22 444444444444433
Q ss_pred CccccccccCCCCCCEEEeeCcCCCcc--CCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCcc
Q 005207 295 FARVPSSINGLKSLKTLNLSGCCKLEN--VPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASW 372 (709)
Q Consensus 295 ~~~l~~~~~~l~~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~ 372 (709)
.+.. .+..+++|++|++++|...+. .+..+..+++|++|++++|.+..+|..+..+++|++|++++|......+
T Consensus 341 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 416 (606)
T 3vq2_A 341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE-- 416 (606)
T ss_dssp CEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTT--
T ss_pred ccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccC--
Confidence 3222 233444555555554443332 2444444555555555555555555444555555555555554222111
Q ss_pred ccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcc--cChhhhcCCCcC
Q 005207 373 HLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVT--LPASINSLLNLK 450 (709)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~--lp~~i~~l~~L~ 450 (709)
...+..+++|+.|++++|++. +..|..+..+++|++|++++|++.. +|..+..+++|+
T Consensus 417 -------------------~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 417 -------------------FSAFLSLEKLLYLDISYTNTK-IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476 (606)
T ss_dssp -------------------TTTTTTCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred -------------------hhhhhccccCCEEECcCCCCC-ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence 012444455555555555543 3344444455555555555555442 344444555555
Q ss_pred eecccccc
Q 005207 451 ELEMEDCK 458 (709)
Q Consensus 451 ~L~L~~c~ 458 (709)
.|++++|.
T Consensus 477 ~L~Ls~n~ 484 (606)
T 3vq2_A 477 FLDLSKCQ 484 (606)
T ss_dssp EEECTTSC
T ss_pred EEECCCCc
Confidence 55555553
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.2e-36 Score=347.64 Aligned_cols=441 Identities=19% Similarity=0.233 Sum_probs=314.6
Q ss_pred CCcceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccCc----ccccCcCccEEEeeCCCCCCCCCc-C-CcC
Q 005207 15 GSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEG----LEYLSNKLRLLDWHRYPLKSLPSN-L-QLD 88 (709)
Q Consensus 15 g~~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~~----~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~ 88 (709)
+...++.+.+..+ . ...+.+.+|.++++||.|++++|.+.+. +..+ .+|++|++++|.++.+|.. + .++
T Consensus 47 ~l~~L~~L~Ls~n-~---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~ 121 (680)
T 1ziw_A 47 RYSQLTSLDVGFN-T---ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC-TNLTELHLMSNSIQKIKNNPFVKQK 121 (680)
T ss_dssp GGTTCSEEECCSS-C---CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred CCCcCcEEECCCC-c---cCccCHHHHhcccCcCEEECCCCccCccChhhhccC-CCCCEEECCCCccCccChhHccccC
Confidence 3457788887776 3 3456678899999999999999887642 3334 5899999999999888853 4 889
Q ss_pred CceEEEcccCCccccc-cccccccCCcEEEcCCCCCCCCCCC---CCCCCCccEEeccCCccccccC-ccccccccc---
Q 005207 89 KIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTPD---FTEAPNLEELYLEGCTKLRKVH-PSLLLHNKL--- 160 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~~---~~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L--- 160 (709)
+|++|++++|.++.++ ..+..+++|++|++++|.+....+. +..+++|++|++++|. +..++ ..+..+..+
T Consensus 122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEE
T ss_pred CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-ccccChhhhhhhhhhhhh
Confidence 9999999999988664 5678899999999999887665542 3356788888888873 33332 222222111
Q ss_pred ------------------------------------------ccC--CCccEEEccCCCCCCcCCccccCCCccceeecc
Q 005207 161 ------------------------------------------IFV--ESLKILILSGCLKLRKFPHVVGSMECLQELLLD 196 (709)
Q Consensus 161 ------------------------------------------~~l--~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~ 196 (709)
..+ ++|+.|++++|.+.+..|..++.+++|++|+++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCC
Confidence 111 348899999998888888889999999999999
Q ss_pred CCCcccc-CcccccCCCCcEEecCCCCCCC-----cCcc----cccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeec
Q 005207 197 GTDIKEL-PLSIEHLFGLVQLTLNDCKNLS-----SLPV----AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNL 266 (709)
Q Consensus 197 ~~~i~~l-p~~l~~l~~L~~L~L~~~~~l~-----~lp~----~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L 266 (709)
+|.+..+ |..+..+++|+.|++++|.... .+|. .+..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred CCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 9988854 4567777777777777653221 2332 4566677777777777666655555555555555555
Q ss_pred c----------------------------CccCccc-CcccCCCCCCCEEeccCCCCCcccc-ccccCCCCCCEEEeeCc
Q 005207 267 D----------------------------GTSITEV-PSSIELLPGLELLNLNDCKNFARVP-SSINGLKSLKTLNLSGC 316 (709)
Q Consensus 267 ~----------------------------~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~L~~~ 316 (709)
+ +|.+..+ |..+..+++|+.|++++|.+.+.+| ..+.++++|++|++++|
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 4 4445543 4567889999999999999887666 67889999999999999
Q ss_pred CCCccCCccccCCCccceeeccccccc---cCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCC
Q 005207 317 CKLENVPDTLGQVESLEELDISETAVR---RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLP 393 (709)
Q Consensus 317 ~~~~~~~~~l~~l~~L~~L~L~~n~i~---~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp 393 (709)
...+..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|......+ .
T Consensus 441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~----------------------~ 498 (680)
T 1ziw_A 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND----------------------D 498 (680)
T ss_dssp SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT----------------------T
T ss_pred CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh----------------------h
Confidence 988777888888999999999998875 567788889999999999987442211 1
Q ss_pred CCCCCCCCCEEeccCCCCCC---CCCC----CCCCCCCCCCEEEcCCCCCcccCh-hhhcCCCcCeeccccccccccCCC
Q 005207 394 SLSGLRSLTKLDLSDCGLGE---GAIP----SDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQFLPQ 465 (709)
Q Consensus 394 ~l~~l~~L~~L~Ls~n~l~~---~~~~----~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~ 465 (709)
.+.++++|+.|++++|++.. ..+| ..+..+++|++|+|++|+++.+|. .+..+++|+.|++++| .++.+|.
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~ 577 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPA 577 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CCCcCCH
Confidence 15667777777777777642 0111 236677777777777777777775 3677777777777777 3455553
Q ss_pred C----CCCccEEEecCCCCcceec
Q 005207 466 L----PPNIIFVKVNGCSSLVTLL 485 (709)
Q Consensus 466 l----p~sL~~L~i~~C~~L~~l~ 485 (709)
- .++|+.|+++++ .|+.+.
T Consensus 578 ~~~~~l~~L~~L~L~~N-~l~~~~ 600 (680)
T 1ziw_A 578 SVFNNQVSLKSLNLQKN-LITSVE 600 (680)
T ss_dssp TTTTTCTTCCEEECTTS-CCCBCC
T ss_pred hHhCCCCCCCEEECCCC-cCCccC
Confidence 1 256777777776 455544
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8e-37 Score=356.38 Aligned_cols=349 Identities=16% Similarity=0.162 Sum_probs=288.5
Q ss_pred CCCCCCCCccEEeccCCccccc------------------cCcccccccccccCCCccEEEccCCCCCCcCCccccCCCc
Q 005207 128 PDFTEAPNLEELYLEGCTKLRK------------------VHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC 189 (709)
Q Consensus 128 ~~~~~l~~L~~L~L~~~~~l~~------------------~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~ 189 (709)
+.+.++++|+.|+|++|. +.. +|..++ +..+++|++|++++|.+.+.+|..++++++
T Consensus 442 ~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~----f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELS----WSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516 (876)
T ss_dssp GGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCC----GGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred HHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhh----hccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence 358899999999999985 554 776654 113788999999999999999999999999
Q ss_pred cceeeccCCC-ccc--cCcccccCC-------CCcEEecCCCCCCCcCcc--cccCCccCcEEeeeCCCCCCcCchhhcc
Q 005207 190 LQELLLDGTD-IKE--LPLSIEHLF-------GLVQLTLNDCKNLSSLPV--AISSFQCLRNLKLSGCSKLKKFPQIVTT 257 (709)
Q Consensus 190 L~~L~l~~~~-i~~--lp~~l~~l~-------~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 257 (709)
|+.|++++|. ++. +|..++.+. +|+.|++++|... .+|. .++++++|+.|++++|.+. .+| .+..
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~ 593 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGT 593 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCT
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcC
Confidence 9999999998 874 888777766 9999999998866 8998 8999999999999999988 777 8899
Q ss_pred CCCCCeeeccCccCcccCcccCCCCC-CCEEeccCCCCCccccccccCCCC--CCEEEeeCcCCCccCCcc---cc--CC
Q 005207 258 MEDLSELNLDGTSITEVPSSIELLPG-LELLNLNDCKNFARVPSSINGLKS--LKTLNLSGCCKLENVPDT---LG--QV 329 (709)
Q Consensus 258 l~~L~~L~L~~~~i~~l~~~~~~l~~-L~~L~L~~~~~~~~l~~~~~~l~~--L~~L~L~~~~~~~~~~~~---l~--~l 329 (709)
+++|+.|++++|.+..+|..+..+++ |+.|++++|.+. .+|..+..++. |+.|++++|.+.+.+|.. ++ .+
T Consensus 594 L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp TSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred CCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 99999999999999999999999999 999999999977 78888777654 999999999988766532 23 34
Q ss_pred CccceeeccccccccCCcccc-cccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccC
Q 005207 330 ESLEELDISETAVRRPPSSVF-LMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSD 408 (709)
Q Consensus 330 ~~L~~L~L~~n~i~~l~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~ 408 (709)
++|+.|++++|.+..+|..+. .+++|+.|++++|...... .... ....+.+.++++|+.|+|++
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip-~~~~--------------~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP-ENSL--------------KPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCC-TTSS--------------SCTTSCCTTGGGCCEEECCS
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccC-hHHh--------------ccccccccccCCccEEECCC
Confidence 589999999999999998876 6899999999999854211 1100 00111244566999999999
Q ss_pred CCCCCCCCCCCCC--CCCCCCEEEcCCCCCcccChhhhcCCCcCeecccc------ccccccCCCC---CCCccEEEecC
Q 005207 409 CGLGEGAIPSDIG--NLHSLNELYLSKNNFVTLPASINSLLNLKELEMED------CKRLQFLPQL---PPNIIFVKVNG 477 (709)
Q Consensus 409 n~l~~~~~~~~l~--~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~------c~~L~~lp~l---p~sL~~L~i~~ 477 (709)
|++. .+|..+. .+++|+.|+|++|+++.+|..+..+++|+.|+|++ |.....+|.. .++|+.|++++
T Consensus 738 N~L~--~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~ 815 (876)
T 4ecn_A 738 NKLT--SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815 (876)
T ss_dssp SCCC--CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred CCCc--cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence 9996 5888887 99999999999999999999999999999999987 4445566642 36899999999
Q ss_pred CCCcceecCccccccccCcccccccch
Q 005207 478 CSSLVTLLGALKLCKSNGIVIECIDSL 504 (709)
Q Consensus 478 C~~L~~l~~~~~~~~l~~l~~~~c~~L 504 (709)
|.- ..++.... .+++.|++++++-.
T Consensus 816 N~L-~~Ip~~l~-~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 816 NDI-RKVDEKLT-PQLYILDIADNPNI 840 (876)
T ss_dssp SCC-CBCCSCCC-SSSCEEECCSCTTC
T ss_pred CCC-CccCHhhc-CCCCEEECCCCCCC
Confidence 965 77775533 47788888887643
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-36 Score=357.11 Aligned_cols=446 Identities=17% Similarity=0.188 Sum_probs=282.0
Q ss_pred CcceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCcccc-----CcccccCcCccEEEeeCCCCCCC-CCcC-CcC
Q 005207 16 SELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLL-----EGLEYLSNKLRLLDWHRYPLKSL-PSNL-QLD 88 (709)
Q Consensus 16 ~~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~-----~~~~~l~~~L~~L~l~~~~l~~l-p~~~-~l~ 88 (709)
...++.+.|..+ .. ..+.+.+|.++++|++|++++|... +.+..+ ++|++|++++|.+..+ |..+ .++
T Consensus 23 p~~l~~LdLs~N-~i---~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 23 LNTTERLLLSFN-YI---RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL-PNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp CTTCCEEEEESC-CC---CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSC-TTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCcCEEECCCC-cC---CccChhHCcccccCeEEeCCCCCCccccCHHHhcCC-CCCCEEECCCCcCcccCHhHccCCc
Confidence 357888888887 43 4667789999999999999998543 345555 5999999999999888 5556 899
Q ss_pred CceEEEcccCCccc-cccc--cccccCCcEEEcCCCCCCCCCC--CCCCCCCccEEeccCCccccccCcccccccccccC
Q 005207 89 KIVEFKMCYSRIEE-LWKG--IKHLNMLKVMKLSHSENLIKTP--DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFV 163 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~-l~~~--~~~l~~L~~L~Ls~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l 163 (709)
+|++|+|++|.++. ++.. +.++++|++|+|++|.+....+ .|+++++|++|++++|..-...+..+..+..
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~---- 173 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG---- 173 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH----
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC----
Confidence 99999999999985 4544 8999999999999999877654 4899999999999998543334444443211
Q ss_pred CCccEEEccCCCCCCcCCccccCCCc------cceeeccCCCcc-ccCcccc----------------------------
Q 005207 164 ESLKILILSGCLKLRKFPHVVGSMEC------LQELLLDGTDIK-ELPLSIE---------------------------- 208 (709)
Q Consensus 164 ~~L~~L~Ls~~~~~~~~~~~l~~l~~------L~~L~l~~~~i~-~lp~~l~---------------------------- 208 (709)
++|+.|++++|.+.+..|..++.+.+ |+.|++++|.+. .++..+.
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 56677777777776666655555544 777777776544 2221111
Q ss_pred --------c--CCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCccc-Ccc
Q 005207 209 --------H--LFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEV-PSS 277 (709)
Q Consensus 209 --------~--l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~~ 277 (709)
. .++|+.|++++|......|..+..+++|+.|++++|.+....+..+.++++|++|++++|.+..+ +..
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence 1 24677777777666555566667777777777777777766666777777777777777777655 445
Q ss_pred cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcc---------
Q 005207 278 IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS--------- 348 (709)
Q Consensus 278 ~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~--------- 348 (709)
+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+. ..+++|+.|++++|.+..+|..
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~l 408 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCCCCCTTCCEEEC
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccccccccccceeec
Confidence 67777777777777766555556667777777777777665421 1244555555555554444322
Q ss_pred -------------cccccCCcEEEccCCCCCCCCCccccc--cccccccCcccc-c-----cccCCCCCCCCCCCEEecc
Q 005207 349 -------------VFLMKNLRTLSFSGCNGPPSSASWHLH--LPFNLMGKSSCL-V-----ALMLPSLSGLRSLTKLDLS 407 (709)
Q Consensus 349 -------------~~~l~~L~~L~L~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~-----~~~lp~l~~l~~L~~L~Ls 407 (709)
+..+++|++|++++|+........... ..........+. . +.....+.++++|+.|+|+
T Consensus 409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 488 (844)
T 3j0a_A 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488 (844)
T ss_dssp CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred ccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECC
Confidence 235677777777777644221110000 000000000000 0 0111125555666666666
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccccccCCCCCCCccEEEecC
Q 005207 408 DCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQLPPNIIFVKVNG 477 (709)
Q Consensus 408 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~ 477 (709)
+|+++ +..|..+..+++|+.|+|++|+++.+|..... ++|+.|+|++|......|...++|+.|++.+
T Consensus 489 ~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~ 556 (844)
T 3j0a_A 489 HNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFVSLSVLDITH 556 (844)
T ss_dssp HHHHT-TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCSSCCEEEEEE
T ss_pred CCccc-ccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHhCCcCEEEecC
Confidence 66664 44455566666666666666666655543322 5666666666655555555445566666554
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=344.28 Aligned_cols=423 Identities=22% Similarity=0.241 Sum_probs=328.7
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccC----cccccCcCccEEEeeCCCCCCCCC-cC-CcCCc
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKI 90 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L 90 (709)
..++.+.+..+ ....+.+.+|.++++|+.|++++|.+.+ .+..+ ++|++|++++|.++.+|. .+ .+++|
T Consensus 28 ~~l~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFN----PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SSCCEEECCSC----CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred ccccEEEccCC----ccCccChhHhhCCCCceEEECCCCcCCccCcccccCc-hhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 46777777777 3456777899999999999999998763 23444 599999999999999884 44 89999
Q ss_pred eEEEcccCCcccccc-ccccccCCcEEEcCCCCCCC-C-CCCCCCCCCccEEeccCCccccccC-cccccccccccCCCc
Q 005207 91 VEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLI-K-TPDFTEAPNLEELYLEGCTKLRKVH-PSLLLHNKLIFVESL 166 (709)
Q Consensus 91 ~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~-~-~~~~~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~l~~L 166 (709)
++|++++|+++.++. .+..+++|++|++++|.+.. . +..++++++|++|++++|. +..++ ..+..+.++ +.+
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L---~~~ 178 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQM---PLL 178 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTC---TTC
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhcc---chh
Confidence 999999999999875 68999999999999998876 2 3468999999999999984 44443 334443322 211
Q ss_pred -cEEEccCCCCCCcCCccccCCCccceeeccCCC----------------------------------------------
Q 005207 167 -KILILSGCLKLRKFPHVVGSMECLQELLLDGTD---------------------------------------------- 199 (709)
Q Consensus 167 -~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~---------------------------------------------- 199 (709)
+.+++++|.+.+..+..+... +|+.|++++|.
T Consensus 179 ~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l 257 (570)
T 2z63_A 179 NLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS
T ss_pred hhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc
Confidence 678888888777766666555 67777776652
Q ss_pred ------------cc-ccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeec
Q 005207 200 ------------IK-ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNL 266 (709)
Q Consensus 200 ------------i~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L 266 (709)
+. .+|..+..+++|+.|++++|.. ..+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l 332 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTF 332 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE-CSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEE
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc-hhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeC
Confidence 11 2345667789999999998764 4688888888 9999999999877 4444 47889999999
Q ss_pred cCccCcccCcccCCCCCCCEEeccCCCCCccc--cccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccccccc
Q 005207 267 DGTSITEVPSSIELLPGLELLNLNDCKNFARV--PSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 344 (709)
Q Consensus 267 ~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l--~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~ 344 (709)
++|.+...... ..+++|+.|++++|.+.+.. +..+..+++|++|++++|...+..+. +..+++|+.|++++|.+..
T Consensus 333 ~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~ 410 (570)
T 2z63_A 333 TSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ 410 (570)
T ss_dssp ESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEES
T ss_pred cCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccc
Confidence 99988754443 77899999999999876553 67788899999999999877665444 8889999999999999986
Q ss_pred CCc--ccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCC
Q 005207 345 PPS--SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGN 422 (709)
Q Consensus 345 l~~--~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 422 (709)
.+. .+..+++|++|++++|..... ....+.++++|+.|++++|++.++.+|..+..
T Consensus 411 ~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 411 MSEFSVFLSLRNLIYLDISHTHTRVA----------------------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp CTTSCTTTTCTTCCEEECTTSCCEEC----------------------CTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred ccchhhhhcCCCCCEEeCcCCccccc----------------------chhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 643 577899999999999874321 11227788999999999999865678899999
Q ss_pred CCCCCEEEcCCCCCccc-ChhhhcCCCcCeeccccccccccCCC-C---CCCccEEEecCCC
Q 005207 423 LHSLNELYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQFLPQ-L---PPNIIFVKVNGCS 479 (709)
Q Consensus 423 l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~-l---p~sL~~L~i~~C~ 479 (709)
+++|++|++++|+++.+ |..+..+++|+.|++++|+ ++.+|. . .++|+.|++++++
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence 99999999999999966 7788999999999999995 444442 1 2466666666654
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-36 Score=340.72 Aligned_cols=422 Identities=18% Similarity=0.161 Sum_probs=262.8
Q ss_pred CCcceEEecCccccC----cccccCcCccEEEeeCCCCCCCCCc-C-CcCCceEEEcccCCccccc-cccccccCCcEEE
Q 005207 45 TNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMK 117 (709)
Q Consensus 45 ~~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~ 117 (709)
++++.|++++|.+.+ .+..+ ++|++|++++|.++.++.. + .+++|++|+|++|.++.++ ..+..+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTC-SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCC-CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 457777777777653 23334 4777777777777777643 3 6777777777777777665 5677777777777
Q ss_pred cCCCCCCCCCC-CCCCCCCccEEeccCCcccc-ccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCcc----c
Q 005207 118 LSHSENLIKTP-DFTEAPNLEELYLEGCTKLR-KVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECL----Q 191 (709)
Q Consensus 118 Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L----~ 191 (709)
+++|++....+ .++++++|++|++++|.... .+|..++. +++|++|++++|.+.+..+..++.+++| +
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGG------CTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcc------cCCCCEEeCcCCccceecHHHccchhccchhhh
Confidence 77777655544 47777777777777763222 24444433 5667777777777776666667766666 6
Q ss_pred eeeccCCCccccCcccccCCCCcEEecCCCCC------------------------------------------------
Q 005207 192 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKN------------------------------------------------ 223 (709)
Q Consensus 192 ~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~------------------------------------------------ 223 (709)
.|++++|.+..++.......+|+.|++++|..
T Consensus 181 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred hcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 77777777776655444444677776665421
Q ss_pred ----------CCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCC
Q 005207 224 ----------LSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCK 293 (709)
Q Consensus 224 ----------l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~ 293 (709)
....|..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+..+|. ..+++|+.|++++|.
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCB
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCc
Confidence 1112222333444445554444433 233334444 45555555554444443 244455555555544
Q ss_pred CCccccccccCCCCCCEEEeeCcCCCccC--CccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCc
Q 005207 294 NFARVPSSINGLKSLKTLNLSGCCKLENV--PDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSAS 371 (709)
Q Consensus 294 ~~~~l~~~~~~l~~L~~L~L~~~~~~~~~--~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~ 371 (709)
..+..+. ..+++|++|++++|...... +..+..+++|+.|++++|.+..++..+..+++|++|++++|......
T Consensus 337 ~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 412 (570)
T 2z63_A 337 GGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-- 412 (570)
T ss_dssp SCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCT--
T ss_pred ccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccccc--
Confidence 4333332 34555555555555443322 34444555555555555555555554555555555555555421110
Q ss_pred cccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc--ccChhhhcCCCc
Q 005207 372 WHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNL 449 (709)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L 449 (709)
....+..+++|+.|++++|.+. +..|..+..+++|++|++++|++. .+|..+..+++|
T Consensus 413 -------------------~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 413 -------------------EFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp -------------------TSCTTTTCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred -------------------chhhhhcCCCCCEEeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 0123778999999999999985 667888999999999999999997 689999999999
Q ss_pred CeeccccccccccCCCC---CCCccEEEecCCCCcceecCc--cccccccCccccccc
Q 005207 450 KELEMEDCKRLQFLPQL---PPNIIFVKVNGCSSLVTLLGA--LKLCKSNGIVIECID 502 (709)
Q Consensus 450 ~~L~L~~c~~L~~lp~l---p~sL~~L~i~~C~~L~~l~~~--~~~~~l~~l~~~~c~ 502 (709)
+.|++++|+.....|.. .++|++|++++| .++.+... ....+++.+++.+++
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 99999999755544532 368999999998 46665432 234455666666543
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.8e-36 Score=343.77 Aligned_cols=348 Identities=16% Similarity=0.168 Sum_probs=291.9
Q ss_pred CCCCCCCCccEEeccCCccccc------------------cCcccccccccccCCCccEEEccCCCCCCcCCccccCCCc
Q 005207 128 PDFTEAPNLEELYLEGCTKLRK------------------VHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC 189 (709)
Q Consensus 128 ~~~~~l~~L~~L~L~~~~~l~~------------------~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~ 189 (709)
+.++++++|++|+|++|. +.. +|..++ +..+++|++|++++|.+.+.+|..++++++
T Consensus 200 ~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~----~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLK----WDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp GGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCC----GGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred HHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhh----hcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 358899999999999985 555 777666 013678999999999999999999999999
Q ss_pred cceeeccCCC-cc--ccCcccccC------CCCcEEecCCCCCCCcCcc--cccCCccCcEEeeeCCCCCCcCchhhccC
Q 005207 190 LQELLLDGTD-IK--ELPLSIEHL------FGLVQLTLNDCKNLSSLPV--AISSFQCLRNLKLSGCSKLKKFPQIVTTM 258 (709)
Q Consensus 190 L~~L~l~~~~-i~--~lp~~l~~l------~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l 258 (709)
|++|++++|. ++ .+|..++.+ ++|+.|++++|... .+|. .++++++|++|++++|.+.+.+| .+..+
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 9999999998 88 499988886 99999999998766 8998 89999999999999999987888 88999
Q ss_pred CCCCeeeccCccCcccCcccCCCCC-CCEEeccCCCCCccccccccCCC--CCCEEEeeCcCCCccCCcccc-------C
Q 005207 259 EDLSELNLDGTSITEVPSSIELLPG-LELLNLNDCKNFARVPSSINGLK--SLKTLNLSGCCKLENVPDTLG-------Q 328 (709)
Q Consensus 259 ~~L~~L~L~~~~i~~l~~~~~~l~~-L~~L~L~~~~~~~~l~~~~~~l~--~L~~L~L~~~~~~~~~~~~l~-------~ 328 (709)
++|++|++++|.+..+|..+..+++ |+.|++++|.+. .+|..+..++ +|++|++++|.+.+..|..+. .
T Consensus 353 ~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred CCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 9999999999999999999999999 999999999977 7888877655 999999999999999888888 7
Q ss_pred CCccceeeccccccccCCccccc-ccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEecc
Q 005207 329 VESLEELDISETAVRRPPSSVFL-MKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLS 407 (709)
Q Consensus 329 l~~L~~L~L~~n~i~~l~~~~~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls 407 (709)
+++|+.|++++|.++.+|..+.. +++|++|++++|...... .... ....+.+.++++|+.|+|+
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~--------------~~~~~~~~~l~~L~~L~Ls 496 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP-KNSL--------------KDENENFKNTYLLTSIDLR 496 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCC-SSSS--------------EETTEECTTGGGCCEEECC
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcC-HHHh--------------ccccccccccCCccEEECc
Confidence 88999999999999999988765 899999999999854211 1100 0001113445599999999
Q ss_pred CCCCCCCCCCCCCC--CCCCCCEEEcCCCCCcccChhhhcCCCcCeecccc------ccccccCCCC---CCCccEEEec
Q 005207 408 DCGLGEGAIPSDIG--NLHSLNELYLSKNNFVTLPASINSLLNLKELEMED------CKRLQFLPQL---PPNIIFVKVN 476 (709)
Q Consensus 408 ~n~l~~~~~~~~l~--~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~------c~~L~~lp~l---p~sL~~L~i~ 476 (709)
+|++. .+|..+. .+++|+.|+|++|+++.+|..+..+++|+.|+|++ |.....+|.- .++|+.|+++
T Consensus 497 ~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls 574 (636)
T 4eco_A 497 FNKLT--KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574 (636)
T ss_dssp SSCCC--BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CCcCC--ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence 99996 6888886 99999999999999999999999999999999965 4445566642 3689999999
Q ss_pred CCCCcceecCccccccccCccccccc
Q 005207 477 GCSSLVTLLGALKLCKSNGIVIECID 502 (709)
Q Consensus 477 ~C~~L~~l~~~~~~~~l~~l~~~~c~ 502 (709)
+|.- +.++.... .+++.|++.+++
T Consensus 575 ~N~l-~~ip~~~~-~~L~~L~Ls~N~ 598 (636)
T 4eco_A 575 SNDI-RKVNEKIT-PNISVLDIKDNP 598 (636)
T ss_dssp SSCC-CBCCSCCC-TTCCEEECCSCT
T ss_pred CCcC-CccCHhHh-CcCCEEECcCCC
Confidence 9875 77765432 566677777664
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=343.30 Aligned_cols=423 Identities=20% Similarity=0.187 Sum_probs=297.3
Q ss_pred CCCCcceEEecCccccC----cccccCcCccEEEeeCC-CCCCC-CCcC-CcCCceEEEcccCCcccc-ccccccccCCc
Q 005207 43 LMTNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRY-PLKSL-PSNL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLK 114 (709)
Q Consensus 43 ~l~~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~-~l~~l-p~~~-~l~~L~~L~Ls~n~i~~l-~~~~~~l~~L~ 114 (709)
-.++|+.|++++|.+.+ .+..+ .+|++|++++| ....+ |..+ .+++|++|+|++|.|+.+ |..+..+++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l-~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFL-EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSC-CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCccc-ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 45789999999998763 34455 58999999998 45566 4555 899999999999999977 67899999999
Q ss_pred EEEcCCCCCCCCCC-C--CCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCC--Cc
Q 005207 115 VMKLSHSENLIKTP-D--FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSM--EC 189 (709)
Q Consensus 115 ~L~Ls~~~~~~~~~-~--~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l--~~ 189 (709)
+|+|++|.+....+ . +.++++|++|+|++|. +..++.. ..+..+++|++|++++|.+.+..+..+..+ ++
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~----~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLH----PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCC----GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccc----hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 99999998876443 2 8899999999999984 3333211 123447889999999999988888888877 89
Q ss_pred cceeeccCCCcc-ccCcccccCCC------CcEEecCCCCCCCcCccccc------------------------------
Q 005207 190 LQELLLDGTDIK-ELPLSIEHLFG------LVQLTLNDCKNLSSLPVAIS------------------------------ 232 (709)
Q Consensus 190 L~~L~l~~~~i~-~lp~~l~~l~~------L~~L~L~~~~~l~~lp~~l~------------------------------ 232 (709)
|+.|++++|.+. ..|..+..+.+ |+.|++++|......+..+.
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 999999999887 45666665554 99999998865443332221
Q ss_pred ------C--CccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCccc-CcccCCCCCCCEEeccCCCCCcccccccc
Q 005207 233 ------S--FQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNFARVPSSIN 303 (709)
Q Consensus 233 ------~--l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~~l~~~~~ 303 (709)
+ .++|+.|++++|.+....+..+..+++|+.|+|++|.+..+ +..+..+++|+.|++++|.+.+..|..+.
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 1 25788888888888877788888888888888888888866 45678888889999888888777788888
Q ss_pred CCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccC
Q 005207 304 GLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 383 (709)
Q Consensus 304 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 383 (709)
.+++|++|++++|.+....+..+..+++|+.|++++|.++.++. +++|+.|++++|+.......... ......
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~---l~~L~l 408 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLT---ANLIHL 408 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTT---CCEEEC
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccc---cceeec
Confidence 88889999998887776667778888889999998888887654 67788888888775432211000 000000
Q ss_pred c-cccccccCC-CCCCC-------------------------CCCCEEeccCCCCCC----CCCCCCCCCCCCCCEEEcC
Q 005207 384 S-SCLVALMLP-SLSGL-------------------------RSLTKLDLSDCGLGE----GAIPSDIGNLHSLNELYLS 432 (709)
Q Consensus 384 ~-~~~~~~~lp-~l~~l-------------------------~~L~~L~Ls~n~l~~----~~~~~~l~~l~~L~~L~L~ 432 (709)
. +.......+ .+.++ ++|+.|+|++|.+.. +..+..+..+++|+.|+|+
T Consensus 409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 488 (844)
T 3j0a_A 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488 (844)
T ss_dssp CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred ccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECC
Confidence 0 000000000 02234 445555555554421 2223446666777777777
Q ss_pred CCCCcccCh-hhhcCCCcCeeccccccccccCCC--CCCCccEEEecCCC
Q 005207 433 KNNFVTLPA-SINSLLNLKELEMEDCKRLQFLPQ--LPPNIIFVKVNGCS 479 (709)
Q Consensus 433 ~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~--lp~sL~~L~i~~C~ 479 (709)
+|+++.+|. .+..+++|+.|+|++| .++.+|. ++++|+.|+++++.
T Consensus 489 ~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 489 HNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQ 537 (844)
T ss_dssp HHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEEC
T ss_pred CCcccccChhHccchhhhheeECCCC-CCCccChhhhhccccEEECCCCc
Confidence 777775554 3567777777777777 3455543 45677777777653
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-36 Score=338.39 Aligned_cols=422 Identities=15% Similarity=0.141 Sum_probs=291.7
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccC----cccccCcCccEEEeeCCCCCCCCCcCCcCCceE
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVE 92 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~ 92 (709)
..++.+.+..+ + ...+.+.+|.++++|+.|++++|++.+ .+..+ ++|++|++++|.++.+|.. .+++|++
T Consensus 21 ~~L~~L~Ls~n-~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~lp~~-~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQN-Y---ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN-QELEYLDLSHNKLVKISCH-PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSS-C---CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC-TTCCEEECCSSCCCEEECC-CCCCCSE
T ss_pred ccccEEECCCC-c---ccccChhhccccccccEEecCCCccCCcChHHhhcc-cCCCEEecCCCceeecCcc-ccCCccE
Confidence 45666666666 3 234555667777777777777776653 23333 4677777777777777766 6777777
Q ss_pred EEcccCCccc--cccccccccCCcEEEcCCCCCCCCCCCCCCCCCc--cEEeccCCcc--ccccCcccccccccccCCCc
Q 005207 93 FKMCYSRIEE--LWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNL--EELYLEGCTK--LRKVHPSLLLHNKLIFVESL 166 (709)
Q Consensus 93 L~Ls~n~i~~--l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L--~~L~L~~~~~--l~~~~~~i~~l~~L~~l~~L 166 (709)
|++++|+++. +|..++.+++|++|++++|++.. ..+..+++| ++|++++|.. ....|..+..+.. ..
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~-----~~ 167 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT-----ES 167 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE-----EE
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccccccccc-----ce
Confidence 7777777765 34667777777777777776543 345555566 7777777643 3334444333221 22
Q ss_pred cEEEccCCCCCCcCC-ccccCCCccceeeccCCC-------ccccCcccccCCCCcEEecCCCCCCCcCcccc---cCCc
Q 005207 167 KILILSGCLKLRKFP-HVVGSMECLQELLLDGTD-------IKELPLSIEHLFGLVQLTLNDCKNLSSLPVAI---SSFQ 235 (709)
Q Consensus 167 ~~L~Ls~~~~~~~~~-~~l~~l~~L~~L~l~~~~-------i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l---~~l~ 235 (709)
..+++++|...+.++ ..+..+++|+.|++++|. +......++.+++|+.|++++|......+..+ ...+
T Consensus 168 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 247 (520)
T 2z7x_B 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247 (520)
T ss_dssp EEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred EEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhC
Confidence 345666666555444 356678899999999886 44333478888999999998765443221111 1145
Q ss_pred cCcEEeeeCCCCCCcCchhh-----ccCCCCCeeeccCccCcccC-cccCCC---CCCCEEeccCCCCCccccccccCCC
Q 005207 236 CLRNLKLSGCSKLKKFPQIV-----TTMEDLSELNLDGTSITEVP-SSIELL---PGLELLNLNDCKNFARVPSSINGLK 306 (709)
Q Consensus 236 ~L~~L~Ls~~~~~~~~~~~~-----~~l~~L~~L~L~~~~i~~l~-~~~~~l---~~L~~L~L~~~~~~~~l~~~~~~l~ 306 (709)
+|++|++++|.+.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ ++|+.|++++|.+.... ....++
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~ 324 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKIS 324 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCC
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCC
Confidence 89999999998887788777 8888999999999888 666 333333 67999999998765432 125788
Q ss_pred CCCEEEeeCcCCCccCCccccCCCccceeecccccccc---CCcccccccCCcEEEccCCCCCCCCCccccccccccccC
Q 005207 307 SLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR---PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 383 (709)
Q Consensus 307 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~---l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 383 (709)
+|++|++++|.+.+..|..++.+++|+.|++++|.++. +|..+..+++|++|++++|......+
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~------------- 391 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK------------- 391 (520)
T ss_dssp CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG-------------
T ss_pred cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc-------------
Confidence 99999999998888888888999999999999999885 44567789999999999988432111
Q ss_pred ccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccccccC
Q 005207 384 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFL 463 (709)
Q Consensus 384 ~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~l 463 (709)
...+..+++|+.|++++|+++ +..|..+. ++|+.|++++|+++.+|..+..+++|+.|++++|+ ++.+
T Consensus 392 --------~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l 459 (520)
T 2z7x_B 392 --------KGDCSWTKSLLSLNMSSNILT-DTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSV 459 (520)
T ss_dssp --------GCSCCCCTTCCEEECCSSCCC-GGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCC
T ss_pred --------cchhccCccCCEEECcCCCCC-cchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc-CCcc
Confidence 112567789999999999886 45555443 78999999999999999888899999999999984 5566
Q ss_pred CCC----CCCccEEEecCCC
Q 005207 464 PQL----PPNIIFVKVNGCS 479 (709)
Q Consensus 464 p~l----p~sL~~L~i~~C~ 479 (709)
|.- .++|+.|++++++
T Consensus 460 ~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 460 PDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CTTTTTTCTTCCEEECCSSC
T ss_pred CHHHhccCCcccEEECcCCC
Confidence 642 1355555555544
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6e-35 Score=330.00 Aligned_cols=427 Identities=18% Similarity=0.202 Sum_probs=303.5
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccC----cccccCcCccEEEeeCCCCCCCCCc-C-CcCCc
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKI 90 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 90 (709)
..++.+.+..+ + ...+.+.+|.++++|++|++++|.+.+ .+..+ .+|++|++++|.++.+|.. + .+++|
T Consensus 26 ~~L~~L~Ls~n-~---l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFN-K---ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL-GSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSS-C---CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCccEEECcCC-c---cCccChhhhhcCCcccEEECCCCCcCccChhhcccc-ccCCEEECCCCccCccCHHHhccCCCC
Confidence 57888888887 4 345667899999999999999998764 23444 5899999999999999875 4 89999
Q ss_pred eEEEcccCCcccc--ccccccccCCcEEEcCCCCCCCCCC--CCCCCCCccEEeccCCccccccCccccccccccc----
Q 005207 91 VEFKMCYSRIEEL--WKGIKHLNMLKVMKLSHSENLIKTP--DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF---- 162 (709)
Q Consensus 91 ~~L~Ls~n~i~~l--~~~~~~l~~L~~L~Ls~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~---- 162 (709)
++|++++|.++.+ +..+..+++|++|++++|+.....+ .+.++++|++|++++|......|..+..+.+|+.
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 9999999999854 5778999999999999998554443 6899999999999998654456666655433321
Q ss_pred --------------CCCccEEEccCCCCCCcC---CccccCCCccceeeccCCCcc-----ccCcccccCCCCcEEecCC
Q 005207 163 --------------VESLKILILSGCLKLRKF---PHVVGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLND 220 (709)
Q Consensus 163 --------------l~~L~~L~Ls~~~~~~~~---~~~l~~l~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~ 220 (709)
+++|++|++++|.+.+.. ......+++|+.|+++++.+. .++..+..+.+|+.|++++
T Consensus 181 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp CSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred cCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 345555555555544321 112233455555555555544 2333445566666666666
Q ss_pred CCCCCc--C----cccccCCccCcEEeeeCCCCCCc-----CchhhccCCCCCeeeccCccCcccCccc-CCCCCCCEEe
Q 005207 221 CKNLSS--L----PVAISSFQCLRNLKLSGCSKLKK-----FPQIVTTMEDLSELNLDGTSITEVPSSI-ELLPGLELLN 288 (709)
Q Consensus 221 ~~~l~~--l----p~~l~~l~~L~~L~Ls~~~~~~~-----~~~~~~~l~~L~~L~L~~~~i~~l~~~~-~~l~~L~~L~ 288 (709)
|...+. + ...+..+.+|+.|++.++.+... .+......++|+.|++++|.+..+|..+ ..+++|+.|+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~ 340 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD 340 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEE
T ss_pred ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEE
Confidence 543221 1 11234566777777777654331 2233445678999999999998888776 5789999999
Q ss_pred ccCCCCCcccc---ccccCCCCCCEEEeeCcCCCccCC--ccccCCCccceeeccccccccCCcccccccCCcEEEccCC
Q 005207 289 LNDCKNFARVP---SSINGLKSLKTLNLSGCCKLENVP--DTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGC 363 (709)
Q Consensus 289 L~~~~~~~~l~---~~~~~l~~L~~L~L~~~~~~~~~~--~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~ 363 (709)
+++|.+.+..| ..++.+++|++|++++|.+.+..+ ..+..+++|++|++++|.++.+|..+..+++|++|++++|
T Consensus 341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N 420 (549)
T 2z81_A 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST 420 (549)
T ss_dssp CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTS
T ss_pred ccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCC
Confidence 99998887664 346788999999999987765432 4577889999999999999999988888999999999998
Q ss_pred CCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhh
Q 005207 364 NGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI 443 (709)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i 443 (709)
..... |. .-.++|+.|++++|+++. + ...+++|++|+|++|+++.+|. .
T Consensus 421 ~l~~l------------------------~~-~~~~~L~~L~Ls~N~l~~--~---~~~l~~L~~L~Ls~N~l~~ip~-~ 469 (549)
T 2z81_A 421 GIRVV------------------------KT-CIPQTLEVLDVSNNNLDS--F---SLFLPRLQELYISRNKLKTLPD-A 469 (549)
T ss_dssp CCSCC------------------------CT-TSCTTCSEEECCSSCCSC--C---CCCCTTCCEEECCSSCCSSCCC-G
T ss_pred Ccccc------------------------cc-hhcCCceEEECCCCChhh--h---cccCChhcEEECCCCccCcCCC-c
Confidence 74321 11 012589999999998853 2 2578899999999999998886 4
Q ss_pred hcCCCcCeeccccccccccCCC---CCCCccEEEecCCC
Q 005207 444 NSLLNLKELEMEDCKRLQFLPQ---LPPNIIFVKVNGCS 479 (709)
Q Consensus 444 ~~l~~L~~L~L~~c~~L~~lp~---lp~sL~~L~i~~C~ 479 (709)
..+++|+.|+|++|+.-...|. -.++|+.|++++++
T Consensus 470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 6789999999999854332222 12456666666655
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=324.76 Aligned_cols=412 Identities=18% Similarity=0.144 Sum_probs=306.6
Q ss_pred ceEEecCccccCcccccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCcccc-ccccccccCCcEEEcCCCCCC
Q 005207 48 GLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSENL 124 (709)
Q Consensus 48 ~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~Ls~~~~~ 124 (709)
+.|+++++.+..-+..++++|++|++++|.++.++. .+ .+++|++|+|++|+|+.+ |..+..+++|++|+|++|++.
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 578999999887666677899999999999999884 44 899999999999999987 578999999999999999877
Q ss_pred CCCCCCCCCCCccEEeccCCcccc-ccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCcc--ceeeccCCCc-
Q 005207 125 IKTPDFTEAPNLEELYLEGCTKLR-KVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECL--QELLLDGTDI- 200 (709)
Q Consensus 125 ~~~~~~~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L--~~L~l~~~~i- 200 (709)
. +|.. .+++|++|++++|.... .+|..++. +++|++|++++|.+.+ ..+..+++| +.|++++|.+
T Consensus 83 ~-lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~------l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 83 K-ISCH-PTVNLKHLDLSFNAFDALPICKEFGN------MSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp E-EECC-CCCCCSEEECCSSCCSSCCCCGGGGG------CTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred e-cCcc-ccCCccEEeccCCccccccchhhhcc------CCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 4 4433 89999999999984332 24444444 6789999999998876 456667777 9999999988
Q ss_pred -c-ccCccccc--------------------------CCCCcEEecCCCC-------CCCcCcccccCCccCcEEeeeCC
Q 005207 201 -K-ELPLSIEH--------------------------LFGLVQLTLNDCK-------NLSSLPVAISSFQCLRNLKLSGC 245 (709)
Q Consensus 201 -~-~lp~~l~~--------------------------l~~L~~L~L~~~~-------~l~~lp~~l~~l~~L~~L~Ls~~ 245 (709)
. ..|..+.. +++|+.|++++|. ..+.+| .++.+++|+.|++++|
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccc
Confidence 3 44555544 4445555555543 122222 3555666666666665
Q ss_pred CCCCcCchhh---ccCCCCCeeeccCccCc-ccCccc-----CCCCCCCEEeccCCCCCcccc-ccccCC---CCCCEEE
Q 005207 246 SKLKKFPQIV---TTMEDLSELNLDGTSIT-EVPSSI-----ELLPGLELLNLNDCKNFARVP-SSINGL---KSLKTLN 312 (709)
Q Consensus 246 ~~~~~~~~~~---~~l~~L~~L~L~~~~i~-~l~~~~-----~~l~~L~~L~L~~~~~~~~l~-~~~~~l---~~L~~L~ 312 (709)
.+....+..+ ...++|++|++++|.+. .+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|+
T Consensus 231 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEE
T ss_pred ccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEE
Confidence 5443222111 12458999999999998 788887 8999999999999987 555 444444 6899999
Q ss_pred eeCcCCCccCCccccCCCccceeecccccccc-CCcccccccCCcEEEccCCCCCCCCCccccccccccccCcccccccc
Q 005207 313 LSGCCKLENVPDTLGQVESLEELDISETAVRR-PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALM 391 (709)
Q Consensus 313 L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (709)
+++|...... ....+++|++|++++|.++. +|..+..+++|++|++++|+..... .
T Consensus 309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~---------------------~ 365 (520)
T 2z7x_B 309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS---------------------K 365 (520)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH---------------------H
T ss_pred cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc---------------------c
Confidence 9999875532 12678999999999999996 7888899999999999999843210 0
Q ss_pred CC-CCCCCCCCCEEeccCCCCCCCCCCC-CCCCCCCCCEEEcCCCCCc-ccChhhhcCCCcCeeccccccccccCCC---
Q 005207 392 LP-SLSGLRSLTKLDLSDCGLGEGAIPS-DIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQ--- 465 (709)
Q Consensus 392 lp-~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~--- 465 (709)
+| .+..+++|+.|++++|++. +.+|. .+..+++|++|++++|+++ .+|..+. ++|+.|++++|. ++.+|.
T Consensus 366 ~~~~~~~l~~L~~L~Ls~N~l~-~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~ 441 (520)
T 2z7x_B 366 IAEMTTQMKSLQQLDISQNSVS-YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVV 441 (520)
T ss_dssp HHHHHTTCTTCCEEECCSSCCB-CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGG
T ss_pred chHHHhhCCCCCEEECCCCcCC-cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhh
Confidence 11 1678899999999999996 43554 5888999999999999996 5554443 799999999994 567775
Q ss_pred CCCCccEEEecCCCCcceecCc--cccccccCcccccc
Q 005207 466 LPPNIIFVKVNGCSSLVTLLGA--LKLCKSNGIVIECI 501 (709)
Q Consensus 466 lp~sL~~L~i~~C~~L~~l~~~--~~~~~l~~l~~~~c 501 (709)
-.++|++|++++| .++.++.. ....+++.+++.++
T Consensus 442 ~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 442 KLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp GCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCC
Confidence 2368999999998 57777643 23344555555544
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.1e-34 Score=324.15 Aligned_cols=418 Identities=19% Similarity=0.225 Sum_probs=292.7
Q ss_pred CCcceEEecCccccC----cccccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCccccccc-cccccCCcEEE
Q 005207 45 TNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMK 117 (709)
Q Consensus 45 ~~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~ 117 (709)
++|+.|++++|.+.+ .+..+ ++|++|++++|.++.++. .+ .+++|++|+|++|+++.++.. +..+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcC-CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 689999999998763 34444 599999999999999885 44 899999999999999988754 99999999999
Q ss_pred cCCCCCCCC--CCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeec
Q 005207 118 LSHSENLIK--TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLL 195 (709)
Q Consensus 118 Ls~~~~~~~--~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l 195 (709)
|++|++... ++.+.++++|++|++++|..+..+|.. .+..+++|++|++++|.+.+..|..++.+++|++|++
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI-----DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-----TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHh-----hhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 999998753 356899999999999998767776642 2334788999999999999999999999999999999
Q ss_pred cCCCccccCccc-ccCCCCcEEecCCCCCCCcC--c-ccccCCccCcEEeeeCCCCCCcCc----hhhccCCCCCeeecc
Q 005207 196 DGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSL--P-VAISSFQCLRNLKLSGCSKLKKFP----QIVTTMEDLSELNLD 267 (709)
Q Consensus 196 ~~~~i~~lp~~l-~~l~~L~~L~L~~~~~l~~l--p-~~l~~l~~L~~L~Ls~~~~~~~~~----~~~~~l~~L~~L~L~ 267 (709)
+++.+..+|..+ ..+++|+.|++++|...+.. | .....+++|+.|++++|.+....+ ..+..+++|+.++++
T Consensus 180 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp ECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred ccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 999998888765 56899999999998765431 1 123457899999999987765433 344677889999999
Q ss_pred CccCcccCc-------ccCCCC-----------------------------CCCEEeccCCCCCccccccc-cCCCCCCE
Q 005207 268 GTSITEVPS-------SIELLP-----------------------------GLELLNLNDCKNFARVPSSI-NGLKSLKT 310 (709)
Q Consensus 268 ~~~i~~l~~-------~~~~l~-----------------------------~L~~L~L~~~~~~~~l~~~~-~~l~~L~~ 310 (709)
+|.+..++. .+..++ +|+.|++++|.+ ..+|..+ ..+++|++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~ 338 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEF 338 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccE
Confidence 887664321 123334 455555555543 2344443 35666666
Q ss_pred EEeeCcCCCccCC---ccccCCCccceeeccccccccCCc---ccccccCCcEEEccCCCCCCCCCccccccccccccCc
Q 005207 311 LNLSGCCKLENVP---DTLGQVESLEELDISETAVRRPPS---SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKS 384 (709)
Q Consensus 311 L~L~~~~~~~~~~---~~l~~l~~L~~L~L~~n~i~~l~~---~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 384 (709)
|++++|.+.+.+| ..++.+++|+.|++++|.++.++. .+..+++|++|++++|+...
T Consensus 339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----------------- 401 (549)
T 2z81_A 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP----------------- 401 (549)
T ss_dssp EECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-----------------
T ss_pred EEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-----------------
Confidence 6666666655442 235566666666666666665542 35556666666666665321
Q ss_pred cccccccCCC-CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccccccC
Q 005207 385 SCLVALMLPS-LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFL 463 (709)
Q Consensus 385 ~~~~~~~lp~-l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~l 463 (709)
+|. +..+++|+.|++++|++. .+|..+ .++|++|++++|+++.++ ..+++|++|++++| .++.+
T Consensus 402 -------lp~~~~~~~~L~~L~Ls~N~l~--~l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N-~l~~i 466 (549)
T 2z81_A 402 -------MPDSCQWPEKMRFLNLSSTGIR--VVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRN-KLKTL 466 (549)
T ss_dssp -------CCSCCCCCTTCCEEECTTSCCS--CCCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSSC
T ss_pred -------CChhhcccccccEEECCCCCcc--cccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCC-ccCcC
Confidence 122 555677777777777764 244333 257777777777777654 46777888888877 45566
Q ss_pred CCC--CCCccEEEecCCCCcceecCc--cccccccCccccccc
Q 005207 464 PQL--PPNIIFVKVNGCSSLVTLLGA--LKLCKSNGIVIECID 502 (709)
Q Consensus 464 p~l--p~sL~~L~i~~C~~L~~l~~~--~~~~~l~~l~~~~c~ 502 (709)
|.. .++|+.|+++++ .++.+... ....+++.+++..++
T Consensus 467 p~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 467 PDASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCGGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCcccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 652 467777777776 45544322 223344455554443
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1e-32 Score=312.48 Aligned_cols=395 Identities=15% Similarity=0.136 Sum_probs=227.4
Q ss_pred CCcceEEecCccccCc----ccccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCccccccccccccCCcEEEc
Q 005207 45 TNLGLLKINNVQLLEG----LEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKL 118 (709)
Q Consensus 45 ~~L~~L~l~~~~l~~~----~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~L 118 (709)
++|+.|++++|.+.+. +..+ ++|++|++++|.++.++. .+ .+++|++|+|++|+|+.+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFL-SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTC-TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccC-CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence 4555555555554422 2222 355555555555555532 23 455555555555555555544 5555555555
Q ss_pred CCCCCCCCC--CCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCC--CCcCCccccCC-------
Q 005207 119 SHSENLIKT--PDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLK--LRKFPHVVGSM------- 187 (709)
Q Consensus 119 s~~~~~~~~--~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~--~~~~~~~l~~l------- 187 (709)
++|++.... ..|+++++|++|++++|. +.. ..+ ..+..+ +|++|++++|.+ .+..|..+..+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~---~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l 201 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDL---LPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTT---GGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEE
T ss_pred CCCCccccCchHhhcccCcccEEecCCCc-ccc--Cch---hhhhhc-eeeEEEeecccccccccCcccccccCcceEEE
Confidence 555554422 235555555555555542 221 111 112222 335566655555 44444433332
Q ss_pred -------------------CccceeeccCCCc-----cccCcccccCCCCcEEecCCCCCCC----cCcccccCCccCcE
Q 005207 188 -------------------ECLQELLLDGTDI-----KELPLSIEHLFGLVQLTLNDCKNLS----SLPVAISSFQCLRN 239 (709)
Q Consensus 188 -------------------~~L~~L~l~~~~i-----~~lp~~l~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~ 239 (709)
++|+.|++++|.. ......+..+++|+.|++.++.... .++..+ ..++|++
T Consensus 202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~ 280 (562)
T 3a79_B 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEY 280 (562)
T ss_dssp EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEE
T ss_pred EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccE
Confidence 2233333333220 0111122223333333333221110 111111 1347888
Q ss_pred EeeeCCCCCCcCchhh-----ccCCCCCeeeccCccCcccCc-ccC---CCCCCCEEeccCCCCCccccccccCCCCCCE
Q 005207 240 LKLSGCSKLKKFPQIV-----TTMEDLSELNLDGTSITEVPS-SIE---LLPGLELLNLNDCKNFARVPSSINGLKSLKT 310 (709)
Q Consensus 240 L~Ls~~~~~~~~~~~~-----~~l~~L~~L~L~~~~i~~l~~-~~~---~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~ 310 (709)
|++++|.+.+.+|..+ ..++.|+.+++..+.+ .+|. .+. ...+|+.|++++|.+.... ....+++|++
T Consensus 281 L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 357 (562)
T 3a79_B 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTF 357 (562)
T ss_dssp EEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCE
T ss_pred EEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceE
Confidence 8888888877777665 5566666666666665 4442 111 1256888888888764322 1257788889
Q ss_pred EEeeCcCCCccCCccccCCCccceeeccccccccCC---cccccccCCcEEEccCCCCCCCCCccccccccccccCcccc
Q 005207 311 LNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP---SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCL 387 (709)
Q Consensus 311 L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~---~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (709)
|++++|.+.+..|..++.+++|+.|++++|.++.++ ..+..+++|++|++++|......+
T Consensus 358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----------------- 420 (562)
T 3a79_B 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY----------------- 420 (562)
T ss_dssp EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS-----------------
T ss_pred EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC-----------------
Confidence 999888888878888888888999999888888655 456778888999998887432111
Q ss_pred ccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccccccCCCC-
Q 005207 388 VALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQL- 466 (709)
Q Consensus 388 ~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l- 466 (709)
...+..+++|+.|++++|+++ +..|..+. ++|+.|++++|+++.+|..+..+++|+.|++++|+ ++.+|.-
T Consensus 421 ----~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~ 492 (562)
T 3a79_B 421 ----DRTCAWAESILVLNLSSNMLT-GSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPDGV 492 (562)
T ss_dssp ----SCCCCCCTTCCEEECCSSCCC-GGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTS
T ss_pred ----hhhhcCcccCCEEECCCCCCC-cchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCHHH
Confidence 111567788888999888885 45555443 68888999988888888888888889999998884 5556542
Q ss_pred ---CCCccEEEecCC
Q 005207 467 ---PPNIIFVKVNGC 478 (709)
Q Consensus 467 ---p~sL~~L~i~~C 478 (709)
.++|+.|+++++
T Consensus 493 ~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 493 FDRLTSLQYIWLHDN 507 (562)
T ss_dssp TTTCTTCCCEECCSC
T ss_pred HhcCCCCCEEEecCC
Confidence 134444444443
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.7e-32 Score=302.40 Aligned_cols=371 Identities=17% Similarity=0.142 Sum_probs=212.6
Q ss_pred EEecCccccCcccccCcCccEEEeeCCCCCCCC-CcC-CcCCceEEEcccCCcc-cc-ccccccccCCcEEEcCCCCCCC
Q 005207 50 LKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLP-SNL-QLDKIVEFKMCYSRIE-EL-WKGIKHLNMLKVMKLSHSENLI 125 (709)
Q Consensus 50 L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp-~~~-~l~~L~~L~Ls~n~i~-~l-~~~~~~l~~L~~L~Ls~~~~~~ 125 (709)
++.+++.+..-+. +|++|++|++++|.++.++ ..+ .+++|++|++++|.+. .+ +..+..+++|++|+|++|++..
T Consensus 15 ~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 15 AICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93 (455)
T ss_dssp EECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE
T ss_pred cCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc
Confidence 4444444433333 4456666666666666553 333 5666666666666654 33 2445666666666666666554
Q ss_pred CCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCcc-ccCCCccceeeccCCCcccc
Q 005207 126 KTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHV-VGSMECLQELLLDGTDIKEL 203 (709)
Q Consensus 126 ~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~-l~~l~~L~~L~l~~~~i~~l 203 (709)
..| .|.++++|++|++++|.....++.. ..+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+..+
T Consensus 94 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 94 LETGAFNGLANLEVLTLTQCNLDGAVLSG----NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCBTHHHHS----STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred cChhhccCcccCCEEeCCCCCCCccccCc----ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 433 3566666666666665322112211 11223455566666666555554543 55566666666666655533
Q ss_pred -CcccccC--CCCcEEecCCCCCCCcCccc--------ccCCccCcEEeeeCCCCCCcCchhhccC---CCCCeeeccCc
Q 005207 204 -PLSIEHL--FGLVQLTLNDCKNLSSLPVA--------ISSFQCLRNLKLSGCSKLKKFPQIVTTM---EDLSELNLDGT 269 (709)
Q Consensus 204 -p~~l~~l--~~L~~L~L~~~~~l~~lp~~--------l~~l~~L~~L~Ls~~~~~~~~~~~~~~l---~~L~~L~L~~~ 269 (709)
|..+..+ .+|+.|++++|.....-+.. +..+++|++|++++|.+.+..|..+... ++|+.|++++|
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 2333333 45555555554433222111 1234455555555555554444433322 44555555554
Q ss_pred cCcccCcccCCCCCCCEEeccCCCCCcccccccc--CCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccC-C
Q 005207 270 SITEVPSSIELLPGLELLNLNDCKNFARVPSSIN--GLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRP-P 346 (709)
Q Consensus 270 ~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~--~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l-~ 346 (709)
...........++ ...+..+. ..++|++|++++|.+.+..|..++.+++|++|++++|.+..+ |
T Consensus 250 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 250 YNMGSSFGHTNFK-------------DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp TTTSCCTTCCSSC-------------CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred cccccccchhhhc-------------cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence 3332111000000 00111111 235788888888877777777777888888888888888755 4
Q ss_pred cccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCC
Q 005207 347 SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSL 426 (709)
Q Consensus 347 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 426 (709)
..+..+++|++|++++|...... ...+.++++|+.|+|++|++. +..|..+..+++|
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~~~----------------------~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 373 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGSID----------------------SRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNL 373 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCEEC----------------------GGGGTTCTTCCEEECCSSCCC-EECTTTTTTCTTC
T ss_pred hHhcCcccCCEEECCCCccCCcC----------------------hhHhcCcccCCEEECCCCccc-ccChhhccccccc
Confidence 46667888888888887632110 112667888999999999885 5567888899999
Q ss_pred CEEEcCCCCCcccChh-hhcCCCcCeeccccccccc
Q 005207 427 NELYLSKNNFVTLPAS-INSLLNLKELEMEDCKRLQ 461 (709)
Q Consensus 427 ~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~ 461 (709)
++|+|++|+++.+|.. +..+++|+.|+|++|+.-.
T Consensus 374 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 9999999999988764 5789999999999987543
No 23
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.1e-32 Score=300.16 Aligned_cols=386 Identities=19% Similarity=0.197 Sum_probs=254.2
Q ss_pred CcceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccCcc----cccC------------cCccEEEeeCCCCC
Q 005207 16 SELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLEGL----EYLS------------NKLRLLDWHRYPLK 79 (709)
Q Consensus 16 ~~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~~~----~~l~------------~~L~~L~l~~~~l~ 79 (709)
...++.+.+..+ .. ..++ .+|.++++|+.|++++|.+.+.+ ..+. .++++|++++|.++
T Consensus 10 ~~~L~~L~l~~n-~l---~~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 10 NTFLQEPLRHSS-NL---TEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred cccchhhhcccC-ch---hhCC-hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence 356777777776 33 3454 67999999999999998876432 2221 13689999999999
Q ss_pred CCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccc
Q 005207 80 SLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNK 159 (709)
Q Consensus 80 ~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~ 159 (709)
.+|. .+++|++|++++|+++.+|.. +++|+.|++++|++... +.+ .++|++|++++| .+..+| .
T Consensus 85 ~lp~--~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l-~~~--~~~L~~L~L~~n-~l~~lp-~------ 148 (454)
T 1jl5_A 85 SLPE--LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKAL-SDL--PPLLEYLGVSNN-QLEKLP-E------ 148 (454)
T ss_dssp CCCS--CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCC-CSC--CTTCCEEECCSS-CCSSCC-C------
T ss_pred cCCC--CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcc-cCC--CCCCCEEECcCC-CCCCCc-c------
Confidence 9988 358999999999999998854 47899999999976542 222 268999999998 455565 2
Q ss_pred cccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcE
Q 005207 160 LIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRN 239 (709)
Q Consensus 160 L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~ 239 (709)
+..+++|++|++++|.+.+ +|..+ .+|++|++++|.++.+| .++.+++|+.|++++|... .+|.. .++|++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~ 219 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK-KLPDL---PLSLES 219 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-SCCCC---CTTCCE
T ss_pred cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC-cCCCC---cCcccE
Confidence 3447889999999998775 55543 58999999999999988 6899999999999997654 45542 358999
Q ss_pred EeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCC
Q 005207 240 LKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKL 319 (709)
Q Consensus 240 L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~ 319 (709)
|++++|.+. .+|. +..+++|++|++++|.+..+|.. +++|+.|++++|.+.+ +|.. +++|++|++++|.+.
T Consensus 220 L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 220 IVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS 290 (454)
T ss_dssp EECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred EECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC
Confidence 999999776 5664 78899999999999999988763 4789999999988665 5543 478999999998766
Q ss_pred ccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCC
Q 005207 320 ENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLR 399 (709)
Q Consensus 320 ~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~ 399 (709)
+ ++.. .++|+.|++++|.++.++.. .++|++|++++|+... +|. .++
T Consensus 291 ~-l~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~------------------------lp~--~~~ 337 (454)
T 1jl5_A 291 G-LSEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE------------------------LPA--LPP 337 (454)
T ss_dssp E-ESCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSC------------------------CCC--CCT
T ss_pred c-ccCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccc------------------------ccc--cCC
Confidence 5 2211 26899999999998876531 3589999999987432 121 257
Q ss_pred CCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcc---cChhhhcC-------------CCcCeeccccccccccC
Q 005207 400 SLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVT---LPASINSL-------------LNLKELEMEDCKRLQFL 463 (709)
Q Consensus 400 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~---lp~~i~~l-------------~~L~~L~L~~c~~L~~l 463 (709)
+|+.|++++|++. .+|. .+++|++|++++|+++. +|.++..+ ++|+.|++++|+ ++.+
T Consensus 338 ~L~~L~L~~N~l~--~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~ 411 (454)
T 1jl5_A 338 RLERLIASFNHLA--EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREF 411 (454)
T ss_dssp TCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------
T ss_pred cCCEEECCCCccc--cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCcc
Confidence 8999999999985 4676 47899999999999886 56666666 677777777774 5556
Q ss_pred CCCCCCccEEEecCCC
Q 005207 464 PQLPPNIIFVKVNGCS 479 (709)
Q Consensus 464 p~lp~sL~~L~i~~C~ 479 (709)
|.+|++++.|.+.+|.
T Consensus 412 ~~iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 412 PDIPESVEDLRMNSER 427 (454)
T ss_dssp ----------------
T ss_pred ccchhhHhheeCcCcc
Confidence 6777777777766554
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.4e-32 Score=309.37 Aligned_cols=418 Identities=16% Similarity=0.098 Sum_probs=292.9
Q ss_pred CCCcceEEecCccccCcccccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCcccc-ccccccccCCcEEEcCC
Q 005207 44 MTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSH 120 (709)
Q Consensus 44 l~~L~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~Ls~ 120 (709)
....+.++++++.+.+-+..++++|++|++++|.++.+|. .+ .+++|++|+|++|+|+.+ |..+..+++|++|+|++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3445889999999887666677899999999999998884 44 889999999999999987 46789999999999999
Q ss_pred CCCCCCCCCCCCCCCccEEeccCCccccccC--cccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCC
Q 005207 121 SENLIKTPDFTEAPNLEELYLEGCTKLRKVH--PSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGT 198 (709)
Q Consensus 121 ~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~--~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~ 198 (709)
|++...++. .+++|++|++++|. +..++ ..++ .+++|++|++++|.+.......+..+ +|+.|++++|
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~------~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n 179 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFG------NLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLV 179 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGG------GCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEES
T ss_pred CcCCccCcc--ccccCCEEECCCCC-ccccCchHhhc------ccCcccEEecCCCccccCchhhhhhc-eeeEEEeecc
Confidence 987644434 89999999999984 55443 3333 36788999999988876433333333 4499999998
Q ss_pred Cc--c-ccCcccccCC-CCcEEecCCCCCCCcCcc-cccCCccCcEEeeeCCC---------------------------
Q 005207 199 DI--K-ELPLSIEHLF-GLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCS--------------------------- 246 (709)
Q Consensus 199 ~i--~-~lp~~l~~l~-~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~~~--------------------------- 246 (709)
.+ . ..|..+..+. ....+++++|.....++. .+..+++|+.+++++|.
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 88 4 4455555443 111334444444333322 23445555666555542
Q ss_pred -CCCc----CchhhccCCCCCeeeccCccCc-ccCccc-----CCCCCCCEEeccCCCCCcccc-ccccC---CCCCCEE
Q 005207 247 -KLKK----FPQIVTTMEDLSELNLDGTSIT-EVPSSI-----ELLPGLELLNLNDCKNFARVP-SSING---LKSLKTL 311 (709)
Q Consensus 247 -~~~~----~~~~~~~l~~L~~L~L~~~~i~-~l~~~~-----~~l~~L~~L~L~~~~~~~~l~-~~~~~---l~~L~~L 311 (709)
+... .+.. ...++|++|++++|.+. .+|..+ ..++.|+.+++..+.. .+| ..+.. ..+|++|
T Consensus 260 ~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 260 ETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEE
T ss_pred cCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEE
Confidence 2211 1111 12348999999999988 788776 6777777777777665 444 22222 3679999
Q ss_pred EeeCcCCCccCCccccCCCccceeecccccccc-CCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccc
Q 005207 312 NLSGCCKLENVPDTLGQVESLEELDISETAVRR-PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVAL 390 (709)
Q Consensus 312 ~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (709)
++++|...... ..+.+++|++|++++|.++. +|..+..+++|++|++++|+.....
T Consensus 337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------------- 393 (562)
T 3a79_B 337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF--------------------- 393 (562)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT---------------------
T ss_pred EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc---------------------
Confidence 99999875432 12678999999999999996 6788899999999999999843211
Q ss_pred cCC-CCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc-ccChhhhcCCCcCeeccccccccccCCCC--
Q 005207 391 MLP-SLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLPQL-- 466 (709)
Q Consensus 391 ~lp-~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~l-- 466 (709)
.+| .+.++++|+.|++++|++.....+..+..+++|++|++++|+++ .+|..+. ++|+.|++++| .++.+|.-
T Consensus 394 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~ 470 (562)
T 3a79_B 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVT 470 (562)
T ss_dssp HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTT
T ss_pred cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhc
Confidence 011 26788999999999999963233445888999999999999997 4444333 79999999999 56777752
Q ss_pred -CCCccEEEecCCCCcceecCc--cccccccCcccccc
Q 005207 467 -PPNIIFVKVNGCSSLVTLLGA--LKLCKSNGIVIECI 501 (709)
Q Consensus 467 -p~sL~~L~i~~C~~L~~l~~~--~~~~~l~~l~~~~c 501 (709)
.++|+.|+++++ .+++++.. ....+++.+++.+.
T Consensus 471 ~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 471 HLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp SSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCC
Confidence 268999999887 46676643 23345555555543
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.2e-32 Score=298.66 Aligned_cols=342 Identities=21% Similarity=0.313 Sum_probs=258.4
Q ss_pred cCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCc
Q 005207 66 NKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 145 (709)
.+++.|++.++.++.+|....+++|++|++++|.++.++. +..+++|++|++++|++....+ +.++++|++|++++|
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n- 122 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN- 122 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-
Confidence 4778888888888777764477888888888888887765 7788888888888887665555 778888888888876
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS 225 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~ 225 (709)
.+..+++ +..+++|++|++++|.+.+. + .++.+++|+.|+++ +.+..++. +..+++|+.|++++|.. .
T Consensus 123 ~l~~~~~-------~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l-~ 190 (466)
T 1o6v_A 123 QITDIDP-------LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKV-S 190 (466)
T ss_dssp CCCCCGG-------GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCC-C
T ss_pred CCCCChH-------HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcC-C
Confidence 4444432 34467788888888776552 2 47778888888885 44554443 77888888888888763 3
Q ss_pred cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCC
Q 005207 226 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGL 305 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l 305 (709)
.++. +..+++|++|++++|.+....+ ++.+++|++|++++|.+..++ .+..+++|+.|++++|.+.+..+ +..+
T Consensus 191 ~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l 264 (466)
T 1o6v_A 191 DISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGL 264 (466)
T ss_dssp CCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred CChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcC
Confidence 4443 6778888888888887766544 667888888888888888764 46778888888888887766544 7788
Q ss_pred CCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCcc
Q 005207 306 KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSS 385 (709)
Q Consensus 306 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (709)
++|++|++++|...+..+ +..+++|+.|++++|.+..++. +..+++|+.|++++|.....
T Consensus 265 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~----------------- 324 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI----------------- 324 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC-----------------
T ss_pred CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCc-----------------
Confidence 888888888887765443 7788889999999988887766 67888999999998874321
Q ss_pred ccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccc
Q 005207 386 CLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKR 459 (709)
Q Consensus 386 ~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 459 (709)
+.+..+++|+.|++++|++.+ + ..+..+++|+.|++++|+++.+++ +..+++|+.|++++|+.
T Consensus 325 -------~~~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 325 -------SPVSSLTKLQRLFFYNNKVSD--V-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAW 387 (466)
T ss_dssp -------GGGGGCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEE
T ss_pred -------hhhccCccCCEeECCCCccCC--c-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcc
Confidence 125577889999999998863 2 468888999999999999987765 88899999999999863
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.4e-32 Score=297.59 Aligned_cols=348 Identities=19% Similarity=0.289 Sum_probs=290.5
Q ss_pred CCCCcceEEecCccccC--cccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCC
Q 005207 43 LMTNLGLLKINNVQLLE--GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSH 120 (709)
Q Consensus 43 ~l~~L~~L~l~~~~l~~--~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~ 120 (709)
.+++|+.|++.++.+.. ++..+ ++|++|++++|.++.+|....+++|++|++++|.++.++. +..+++|++|++++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l-~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYL-NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred HhccccEEecCCCCCccCcchhhh-cCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 35678899998887653 34455 5999999999999999884489999999999999998876 89999999999999
Q ss_pred CCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCc
Q 005207 121 SENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDI 200 (709)
Q Consensus 121 ~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i 200 (709)
|.+.... .+..+++|++|++++|. +..++ .+..+++|+.|++++ ..... + .+..+++|+.|++++|.+
T Consensus 122 n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~-------~~~~l~~L~~L~l~~-~~~~~-~-~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 122 NQITDID-PLKNLTNLNRLELSSNT-ISDIS-------ALSGLTSLQQLSFGN-QVTDL-K-PLANLTTLERLDISSNKV 189 (466)
T ss_dssp SCCCCCG-GGTTCTTCSEEEEEEEE-ECCCG-------GGTTCTTCSEEEEEE-SCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred CCCCCCh-HHcCCCCCCEEECCCCc-cCCCh-------hhccCCcccEeecCC-cccCc-h-hhccCCCCCEEECcCCcC
Confidence 9866554 48999999999999983 44433 245578899999974 33332 2 388999999999999999
Q ss_pred cccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCC
Q 005207 201 KELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIEL 280 (709)
Q Consensus 201 ~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~ 280 (709)
..++ .+..+++|+.|++++|......| ++.+++|++|++++|.+... ..+..+++|+.|++++|.+..++. +..
T Consensus 190 ~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~ 263 (466)
T 1o6v_A 190 SDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSG 263 (466)
T ss_dssp CCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTT
T ss_pred CCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hhc
Confidence 9876 48899999999999987655444 77799999999999987653 467889999999999999998776 889
Q ss_pred CCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEc
Q 005207 281 LPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSF 360 (709)
Q Consensus 281 l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L 360 (709)
+++|+.|++++|.+.+..+ +..+++|+.|++++|...+..+ ++.+++|+.|++++|.+..+++ +..+++|++|++
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 338 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFF 338 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEEC
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeEC
Confidence 9999999999998776544 7889999999999998776544 7889999999999999998776 778999999999
Q ss_pred cCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccC
Q 005207 361 SGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLP 440 (709)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp 440 (709)
++|+... ++.+..+++|+.|++++|++. +..| +..+++|+.|++++|+++.+|
T Consensus 339 ~~n~l~~------------------------~~~l~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 339 YNNKVSD------------------------VSSLANLTNINWLSAGHNQIS-DLTP--LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp CSSCCCC------------------------CGGGTTCTTCCEEECCSSCCC-BCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred CCCccCC------------------------chhhccCCCCCEEeCCCCccC-ccch--hhcCCCCCEEeccCCcccCCc
Confidence 9997432 234778999999999999996 4445 899999999999999999887
Q ss_pred hh
Q 005207 441 AS 442 (709)
Q Consensus 441 ~~ 442 (709)
..
T Consensus 392 ~~ 393 (466)
T 1o6v_A 392 VN 393 (466)
T ss_dssp BC
T ss_pred hh
Confidence 54
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=3.3e-31 Score=292.08 Aligned_cols=365 Identities=19% Similarity=0.154 Sum_probs=240.2
Q ss_pred ccEEEeeCCCCCCCCCcCCcCCceEEEcccCCcccc-ccccccccCCcEEEcCCCCCCCCC--CCCCCCCCccEEeccCC
Q 005207 68 LRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSENLIKT--PDFTEAPNLEELYLEGC 144 (709)
Q Consensus 68 L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~Ls~~~~~~~~--~~~~~l~~L~~L~L~~~ 144 (709)
-+.++.+++.++.+|. -+++|++|+|++|+|+.+ +..+..+++|++|+|++|.+...+ ..|.++++|++|++++|
T Consensus 12 ~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 12 GYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 3457778888888888 458899999999999877 567888899999999988875443 34788888888888887
Q ss_pred ccccccCcccccccccccCCCccEEEccCCCCCCcCCcc--ccCCCccceeeccCCCcccc-Ccc-cccCCCCcEEecCC
Q 005207 145 TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHV--VGSMECLQELLLDGTDIKEL-PLS-IEHLFGLVQLTLND 220 (709)
Q Consensus 145 ~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~--l~~l~~L~~L~l~~~~i~~l-p~~-l~~l~~L~~L~L~~ 220 (709)
......|..+.. +++|++|++++|.+.+..+.. ++.+++|++|++++|.+..+ |.. +..+++|++|++++
T Consensus 90 ~l~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 90 QFLQLETGAFNG------LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp TTCEECTTTTTT------CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred ccCccChhhccC------cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 432222333332 556667777777666544333 66666666666666666654 333 55666666666666
Q ss_pred CCCCCcCcccccCC--ccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccc
Q 005207 221 CKNLSSLPVAISSF--QCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARV 298 (709)
Q Consensus 221 ~~~l~~lp~~l~~l--~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l 298 (709)
|......+..+..+ .+|+.|++++|.+....+..+.. .....+..+++|+.|++++|.+.+..
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~---------------~~~~~~~~~~~L~~L~Ls~n~l~~~~ 228 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW---------------EKCGNPFKNTSITTLDLSGNGFKESM 228 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH---------------HHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred CcccccChhhhhccccccccccccccCcccccchhhccc---------------cccccccccceeeeEecCCCcccccc
Confidence 55544444444433 34555555554443322211100 00011223456666666666655555
Q ss_pred cccccCC---CCCCEEEeeCcCCCccC----------Ccccc--CCCccceeeccccccccC-CcccccccCCcEEEccC
Q 005207 299 PSSINGL---KSLKTLNLSGCCKLENV----------PDTLG--QVESLEELDISETAVRRP-PSSVFLMKNLRTLSFSG 362 (709)
Q Consensus 299 ~~~~~~l---~~L~~L~L~~~~~~~~~----------~~~l~--~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~ 362 (709)
|..+... ++|+.|++++|...+.. +..+. ..++|+.|++++|.+..+ |..+..+++|++|++++
T Consensus 229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 308 (455)
T 3v47_A 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308 (455)
T ss_dssp HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTT
T ss_pred hhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCC
Confidence 5444322 56666666665433221 11222 236899999999999954 66788899999999999
Q ss_pred CCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCccc-Ch
Q 005207 363 CNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTL-PA 441 (709)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~ 441 (709)
|..... ....+.++++|+.|+|++|++. +..+..+..+++|++|+|++|+++.+ |.
T Consensus 309 n~l~~~----------------------~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 365 (455)
T 3v47_A 309 NEINKI----------------------DDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQ 365 (455)
T ss_dssp SCCCEE----------------------CTTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred Cccccc----------------------ChhHhcCcccCCEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccChh
Confidence 984321 1223778999999999999995 55678899999999999999999976 67
Q ss_pred hhhcCCCcCeeccccccccccCCC-C---CCCccEEEecCCC
Q 005207 442 SINSLLNLKELEMEDCKRLQFLPQ-L---PPNIIFVKVNGCS 479 (709)
Q Consensus 442 ~i~~l~~L~~L~L~~c~~L~~lp~-l---p~sL~~L~i~~C~ 479 (709)
.+..+++|++|++++|+ ++.+|. . .++|+.|++++++
T Consensus 366 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 366 SFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence 89999999999999995 555553 1 2456666666554
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=2e-30 Score=297.98 Aligned_cols=427 Identities=21% Similarity=0.264 Sum_probs=313.4
Q ss_pred cceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCccccC----cccccCcCccEEEeeCCCCCCCCCc-C-CcCCc
Q 005207 17 ELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKI 90 (709)
Q Consensus 17 ~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 90 (709)
..++.+.|..+ ....+.+.+|.++++||+|++++|++.+ .+..+ ++|++|++++|+++.+|.. | .+.+|
T Consensus 52 ~~~~~LdLs~N----~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFN----PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTS----CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred cCCCEEEeeCC----CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCC-CCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 35777777776 3457888999999999999999998763 34455 5999999999999999965 4 89999
Q ss_pred eEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCC-CC-CCCCCCCccEEeccCCccccccC-ccccccccccc----
Q 005207 91 VEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIK-TP-DFTEAPNLEELYLEGCTKLRKVH-PSLLLHNKLIF---- 162 (709)
Q Consensus 91 ~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~-~~-~~~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~---- 162 (709)
++|+|++|+++.++. .++++++|++|+|++|.+... .| .++.+++|++|++++|. +..++ ..+..+..+..
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCE
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhhh
Confidence 999999999999885 589999999999999987654 33 47889999999999984 44433 33332222111
Q ss_pred -----------------CCCccEEEccCCCCCC-----------------------------------------------
Q 005207 163 -----------------VESLKILILSGCLKLR----------------------------------------------- 178 (709)
Q Consensus 163 -----------------l~~L~~L~Ls~~~~~~----------------------------------------------- 178 (709)
...++.+++.+|....
T Consensus 206 ~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 285 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 285 (635)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred hhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence 0122233333321110
Q ss_pred -----------cCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCC
Q 005207 179 -----------KFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSK 247 (709)
Q Consensus 179 -----------~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~ 247 (709)
..+..+..+.+++.+.+.++.+..++ .+.....|+.|++.+|......+ ..+..|+.+++..+..
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKG 361 (635)
T ss_dssp EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCS
T ss_pred hhhhhhcccccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccC
Confidence 00111222345555666555555444 35667789999999876543322 3477899999998876
Q ss_pred CCcCchhhccCCCCCeeeccCccCcc---cCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCC-
Q 005207 248 LKKFPQIVTTMEDLSELNLDGTSITE---VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP- 323 (709)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~L~~~~i~~---l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~- 323 (709)
.... ....+++|+.|++++|.+.. .+..+..+.+|+.+++..+.... .+..+..+++|+.+++.++......+
T Consensus 362 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~ 438 (635)
T 4g8a_A 362 GNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF 438 (635)
T ss_dssp CCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSS
T ss_pred CCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccc
Confidence 5433 33468899999999998873 45556778899999999876543 45567789999999999887665543
Q ss_pred ccccCCCccceeeccccccccC-CcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCC-CCCCCCCC
Q 005207 324 DTLGQVESLEELDISETAVRRP-PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLP-SLSGLRSL 401 (709)
Q Consensus 324 ~~l~~l~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp-~l~~l~~L 401 (709)
..+..+++++.++++.|.+... +..+..+++|+.|++++|..... ..| .+..+++|
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~----------------------~~~~~~~~l~~L 496 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN----------------------FLPDIFTELRNL 496 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG----------------------EECSCCTTCTTC
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhcccccc----------------------cCchhhhhcccc
Confidence 4577889999999999999855 45566789999999999862211 122 27788999
Q ss_pred CEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccCh-hhhcCCCcCeeccccccccccCCC----CCCCccEEEec
Q 005207 402 TKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCKRLQFLPQ----LPPNIIFVKVN 476 (709)
Q Consensus 402 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~----lp~sL~~L~i~ 476 (709)
+.|+|++|++. +..|..+..+++|++|+|++|+++.++. .+..+++|+.|+|++|+.....|. +|++|+.|+++
T Consensus 497 ~~L~Ls~N~L~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 497 TFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp CEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred CEEECCCCccC-CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence 99999999995 6678889999999999999999998765 678999999999999965544443 56788888887
Q ss_pred CCC
Q 005207 477 GCS 479 (709)
Q Consensus 477 ~C~ 479 (709)
+.|
T Consensus 576 ~Np 578 (635)
T 4g8a_A 576 QND 578 (635)
T ss_dssp TCC
T ss_pred CCC
Confidence 765
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=6.1e-30 Score=293.94 Aligned_cols=419 Identities=17% Similarity=0.142 Sum_probs=249.5
Q ss_pred CcceEEecCccccC----cccccCcCccEEEeeCCCCCCCCCc-C-CcCCceEEEcccCCcccccc-ccccccCCcEEEc
Q 005207 46 NLGLLKINNVQLLE----GLEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKL 118 (709)
Q Consensus 46 ~L~~L~l~~~~l~~----~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~L 118 (709)
+++.|++++|.+.+ .+..+ ++|++|++++|.++.+|.. | .+++|++|+|++|+|+.+|. .|.++++|++|+|
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l-~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCC-CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 46666666666542 23333 3566666666666666543 3 56666666666666666553 3566666666666
Q ss_pred CCCCCCCCCC-CCCCCCCccEEeccCCccccc--cCcccccccccccCCCccEEEccCCCCCCcCCccccCCCcc----c
Q 005207 119 SHSENLIKTP-DFTEAPNLEELYLEGCTKLRK--VHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECL----Q 191 (709)
Q Consensus 119 s~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~--~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L----~ 191 (709)
++|++....+ .|+++++|++|++++|. +.. +|..++ .+++|++|++++|.+.+..+..+..+.++ .
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~------~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFS------NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGG------GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhc------cchhhhhhcccCccccccccccccchhhhhhhhh
Confidence 6665554443 25666666666666652 222 222222 24556666666666555544444333222 2
Q ss_pred eeeccCCCccccCcccccCCCCcEEecCCCCCC------------------------------C----------------
Q 005207 192 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL------------------------------S---------------- 225 (709)
Q Consensus 192 ~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l------------------------------~---------------- 225 (709)
.++++.|.+..++........++.+++.++... .
T Consensus 205 ~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 284 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 284 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred hhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence 344444444433322222222222222221100 0
Q ss_pred ------------cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeee---------------------ccCccCc
Q 005207 226 ------------SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELN---------------------LDGTSIT 272 (709)
Q Consensus 226 ------------~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~---------------------L~~~~i~ 272 (709)
..+..+..+.+++.+.+.++..... ..+....+|+.|+ +..+.+.
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSC
T ss_pred hhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCC
Confidence 0001112223344444444332221 1122333444444 4444443
Q ss_pred ccCcccCCCCCCCEEeccCCCCCc--cccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCC--cc
Q 005207 273 EVPSSIELLPGLELLNLNDCKNFA--RVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP--SS 348 (709)
Q Consensus 273 ~l~~~~~~l~~L~~L~L~~~~~~~--~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~--~~ 348 (709)
..+ ....+++|+.|++++|.+.. ..+.....+.+|+.+++..+.... .+..+..+++|+.+++..+...... ..
T Consensus 363 ~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 440 (635)
T 4g8a_A 363 NAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 440 (635)
T ss_dssp CBC-CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred CCc-ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccc
Confidence 332 23467899999999988753 345566788999999999876544 4456778999999999998877443 34
Q ss_pred cccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCE
Q 005207 349 VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNE 428 (709)
Q Consensus 349 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 428 (709)
+..+++++.++++.|...... ...+..+++|+.|++++|++.....|..+..+++|++
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~----------------------~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~ 498 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAF----------------------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECC----------------------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred ccccccccccccccccccccc----------------------ccccccchhhhhhhhhhcccccccCchhhhhccccCE
Confidence 667999999999998743221 1226778999999999998765678899999999999
Q ss_pred EEcCCCCCccc-ChhhhcCCCcCeeccccccccccCCCC----CCCccEEEecCCCCcceecCcc--c-cccccCccccc
Q 005207 429 LYLSKNNFVTL-PASINSLLNLKELEMEDCKRLQFLPQL----PPNIIFVKVNGCSSLVTLLGAL--K-LCKSNGIVIEC 500 (709)
Q Consensus 429 L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~l----p~sL~~L~i~~C~~L~~l~~~~--~-~~~l~~l~~~~ 500 (709)
|+|++|+++.+ |..+.++++|++|+|++|+ ++.++.. .++|+.|+++++. |+.+.... . +.+++.|++.+
T Consensus 499 L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTT
T ss_pred EECCCCccCCcChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeC
Confidence 99999999977 5578999999999999994 6666542 2689999998874 44443221 1 23455565543
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=1.1e-29 Score=278.45 Aligned_cols=344 Identities=19% Similarity=0.213 Sum_probs=252.4
Q ss_pred cceEEecCccccCcccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCC
Q 005207 47 LGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIK 126 (709)
Q Consensus 47 L~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~ 126 (709)
++.|+++++.+.+- ...|++|++|++++|.++.+|.. +.+|++|++++|+++.++.. .++|++|++++|++..
T Consensus 73 l~~L~l~~~~l~~l-p~~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~- 145 (454)
T 1jl5_A 73 AHELELNNLGLSSL-PELPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK- 145 (454)
T ss_dssp CSEEECTTSCCSCC-CSCCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-
T ss_pred CCEEEecCCccccC-CCCcCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-
Confidence 49999999998763 33568999999999999999974 48999999999999987643 2799999999998876
Q ss_pred CCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcc
Q 005207 127 TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS 206 (709)
Q Consensus 127 ~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~ 206 (709)
.|.++++++|++|++++| .+..+|.. ..+|++|++++|.+.+ +| .++.+++|++|++++|.++.+|..
T Consensus 146 lp~~~~l~~L~~L~l~~N-~l~~lp~~---------~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~ 213 (454)
T 1jl5_A 146 LPELQNSSFLKIIDVDNN-SLKKLPDL---------PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL 213 (454)
T ss_dssp CCCCTTCTTCCEEECCSS-CCSCCCCC---------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC
T ss_pred CcccCCCCCCCEEECCCC-cCcccCCC---------cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC
Confidence 668999999999999998 56666643 2489999999998877 56 589999999999999999988864
Q ss_pred cccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCE
Q 005207 207 IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLEL 286 (709)
Q Consensus 207 l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~ 286 (709)
. .+|+.|++++|... .+|. ++.+++|++|++++|.+.. +|. .+++|++|++++|.+..+|.. +++|+.
T Consensus 214 ~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l~~~---~~~L~~ 281 (454)
T 1jl5_A 214 P---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPEL---PQSLTF 281 (454)
T ss_dssp C---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCCC---CTTCCE
T ss_pred c---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccccCcc---cCcCCE
Confidence 4 58999999998654 7885 8999999999999998765 443 347899999999999998864 489999
Q ss_pred EeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCC-CccceeeccccccccCCcccccccCCcEEEccCCCC
Q 005207 287 LNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQV-ESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 287 L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l-~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~ 365 (709)
|++++|.+.+ +|.. .++|++|++++|...+ ++ .+ ++|+.|++++|.++.+|.. +++|++|++++|..
T Consensus 282 L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l 349 (454)
T 1jl5_A 282 LDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHL 349 (454)
T ss_dssp EECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC
T ss_pred EECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccccccc---CCcCCEEECCCCcc
Confidence 9999998765 2221 2689999999997765 22 23 5899999999999998875 58999999999974
Q ss_pred CCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCC--CCCCCCCCC-------------CCCCEEE
Q 005207 366 PPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEG--AIPSDIGNL-------------HSLNELY 430 (709)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~--~~~~~l~~l-------------~~L~~L~ 430 (709)
.. +|. .+++|+.|++++|++. + .+|..++.+ ++|+.|+
T Consensus 350 ~~------------------------lp~--~l~~L~~L~L~~N~l~-~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ 402 (454)
T 1jl5_A 350 AE------------------------VPE--LPQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLH 402 (454)
T ss_dssp SC------------------------CCC--CCTTCCEEECCSSCCS-SCCCCCTTCCEEECCC----------------
T ss_pred cc------------------------ccc--hhhhccEEECCCCCCC-cCCCChHHHHhhhhcccccccccccCcCCEEE
Confidence 31 233 4689999999999996 4 577888777 8999999
Q ss_pred cCCCCCcccChhhhcCCCcCeeccccccccccC
Q 005207 431 LSKNNFVTLPASINSLLNLKELEMEDCKRLQFL 463 (709)
Q Consensus 431 L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~l 463 (709)
+++|+++.+|.- -+.|+.|.+.+|.....+
T Consensus 403 ls~N~l~~~~~i---P~sl~~L~~~~~~~~~~~ 432 (454)
T 1jl5_A 403 VETNPLREFPDI---PESVEDLRMNSERVVDPY 432 (454)
T ss_dssp ---------------------------------
T ss_pred CCCCcCCccccc---hhhHhheeCcCcccCCcc
Confidence 999999854321 134677788888654443
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=9.5e-31 Score=287.25 Aligned_cols=344 Identities=17% Similarity=0.135 Sum_probs=242.3
Q ss_pred hhcCCCCcceEEecCccccC--cccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEE
Q 005207 40 AFSLMTNLGLLKINNVQLLE--GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMK 117 (709)
Q Consensus 40 ~f~~l~~L~~L~l~~~~l~~--~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 117 (709)
.|.++++|+.|++++|.+.+ ++..+ ++|++|++++|.++.+| ...+++|++|++++|+++.++ +..+++|++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred ChhHcCCCCEEEccCCCcccChhhccc-CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 57778999999999998775 34444 58999999999999886 338899999999999999875 88899999999
Q ss_pred cCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccC
Q 005207 118 LSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDG 197 (709)
Q Consensus 118 Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~ 197 (709)
+++|++... + ++.+++|++|++++| .+..++ +..+++|++|++++|...+.+ .++.+++|+.|++++
T Consensus 113 L~~N~l~~l-~-~~~l~~L~~L~l~~N-~l~~l~--------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 113 CDTNKLTKL-D-VSQNPLLTYLNCARN-TLTEID--------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CCSSCCSCC-C-CTTCTTCCEEECTTS-CCSCCC--------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CCCCcCCee-c-CCCCCcCCEEECCCC-ccceec--------cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 999987653 3 889999999999997 444442 344778999999999776666 477889999999999
Q ss_pred CCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcc
Q 005207 198 TDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS 277 (709)
Q Consensus 198 ~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~ 277 (709)
|.++.+| +..+++|+.|++++|.... ++ ++.+++|++|++++|.+.+ +| +..+++|+.|++++|.++.+|
T Consensus 180 n~l~~l~--l~~l~~L~~L~l~~N~l~~-~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~-- 249 (457)
T 3bz5_A 180 NKITELD--VSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD-- 249 (457)
T ss_dssp SCCCCCC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--
T ss_pred Cccceec--cccCCCCCEEECcCCcCCe-ec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--
Confidence 9999887 7888999999999876544 33 7888999999999988777 45 778889999999999998876
Q ss_pred cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc-cCCcc--------
Q 005207 278 IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPSS-------- 348 (709)
Q Consensus 278 ~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~-~l~~~-------- 348 (709)
++.+++|+.|+++++ +|+.|++++|...+.+| .+.+++|+.|++++|... .+|..
T Consensus 250 ~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 455666666655443 23444444444444443 234444555555444322 12210
Q ss_pred cccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCE
Q 005207 349 VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNE 428 (709)
Q Consensus 349 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 428 (709)
+..+++|++|++++|+... + .++.+++|+.|++++|++.+ +++|..
T Consensus 314 l~~~~~L~~L~L~~N~l~~------------------------l-~l~~l~~L~~L~l~~N~l~~---------l~~L~~ 359 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTE------------------------L-DVSHNTKLKSLSCVNAHIQD---------FSSVGK 359 (457)
T ss_dssp CTTCTTCCEEECTTCCCSC------------------------C-CCTTCTTCSEEECCSSCCCB---------CTTGGG
T ss_pred hhhcccCCEEECCCCcccc------------------------c-ccccCCcCcEEECCCCCCCC---------cccccc
Confidence 1122456666666655221 1 15556666777776666642 245555
Q ss_pred EEcCCCCCcccChhhhcCCCcCeeccccccccccCC
Q 005207 429 LYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLP 464 (709)
Q Consensus 429 L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 464 (709)
|++++|.+... ..+..|+.+++++|..-..+|
T Consensus 360 L~l~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 360 IPALNNNFEAE----GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp SSGGGTSEEEE----EEEEECCCBCCBTTBEEEECC
T ss_pred ccccCCcEEec----ceeeecCccccccCcEEEEcC
Confidence 56666665543 245678889999997665655
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.7e-30 Score=274.13 Aligned_cols=239 Identities=21% Similarity=0.328 Sum_probs=164.9
Q ss_pred ccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCe
Q 005207 184 VGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSE 263 (709)
Q Consensus 184 l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~ 263 (709)
+..+++|++|++++|.+..++. +..+++|+.|++++|.....++. +..+++|++|++++|.+....+ +..+++|++
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred HcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 4445555555555555555544 55666666666666655555554 6667777777777766554433 566777777
Q ss_pred eeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc
Q 005207 264 LNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 343 (709)
Q Consensus 264 L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 343 (709)
|++++|.+..++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|......+ +..+++|++|++++|.+.
T Consensus 182 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 182 LSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp EECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC
Confidence 7777777776655 6667777777777776654433 6667777777777776655433 667778888888888777
Q ss_pred cCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCC
Q 005207 344 RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNL 423 (709)
Q Consensus 344 ~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 423 (709)
.++ .+..+++|++|++++|.... ++.+..+++|+.|++++|++. +..+..+..+
T Consensus 257 ~~~-~~~~l~~L~~L~l~~n~l~~------------------------~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l 310 (347)
T 4fmz_A 257 DIN-AVKDLTKLKMLNVGSNQISD------------------------ISVLNNLSQLNSLFLNNNQLG-NEDMEVIGGL 310 (347)
T ss_dssp CCG-GGTTCTTCCEEECCSSCCCC------------------------CGGGGGCTTCSEEECCSSCCC-GGGHHHHHTC
T ss_pred CCh-hHhcCCCcCEEEccCCccCC------------------------ChhhcCCCCCCEEECcCCcCC-CcChhHhhcc
Confidence 763 46677888888888876321 123567788888888888885 4566677888
Q ss_pred CCCCEEEcCCCCCcccChhhhcCCCcCeecccccc
Q 005207 424 HSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 458 (709)
Q Consensus 424 ~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 458 (709)
++|+.|++++|+++.+++ +..+++|+.|++++|+
T Consensus 311 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 311 TNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp TTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred ccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 899999999998887776 7888899999998885
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=281.75 Aligned_cols=311 Identities=18% Similarity=0.198 Sum_probs=274.7
Q ss_pred ceEEecCccccCcccccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCcccc-ccccccccCCcEEEcCCCCCC
Q 005207 48 GLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEEL-WKGIKHLNMLKVMKLSHSENL 124 (709)
Q Consensus 48 ~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~Ls~~~~~ 124 (709)
+.++++++.+..-+..+|.++++|++++|.++.++. .+ .+++|++|+|++|.|+.+ |..+.++++|++|+|++|++.
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 567788887777666778899999999999999864 44 899999999999999987 678999999999999999987
Q ss_pred CCCCC-CCCCCCccEEeccCCcccccc-CcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccc
Q 005207 125 IKTPD-FTEAPNLEELYLEGCTKLRKV-HPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKE 202 (709)
Q Consensus 125 ~~~~~-~~~l~~L~~L~L~~~~~l~~~-~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~ 202 (709)
...+. |.++++|++|+|++|. +..+ +..+ ..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENK-IVILLDYMF------QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSC-CCEECTTTT------TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred ccCcccccCCCCCCEEECCCCc-cccCChhHc------cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence 76654 8899999999999984 4443 3333 347889999999999998889999999999999999999998
Q ss_pred cCc-ccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCc-ccCC
Q 005207 203 LPL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIEL 280 (709)
Q Consensus 203 lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~ 280 (709)
+|. .+..+++|+.|++++|......+..+..+++|++|++++|.....++.......+|++|++++|.++.+|. .+..
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 246 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC
Confidence 875 58899999999999988777666778999999999999999988888777777799999999999999984 5899
Q ss_pred CCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcc-cccccCCcEEE
Q 005207 281 LPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS-VFLMKNLRTLS 359 (709)
Q Consensus 281 l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~ 359 (709)
+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.++.. +..+++|++|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEE
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEE
Confidence 99999999999998888788899999999999999999998899999999999999999999988875 46799999999
Q ss_pred ccCCCC
Q 005207 360 FSGCNG 365 (709)
Q Consensus 360 L~~~~~ 365 (709)
+++|+.
T Consensus 327 l~~N~l 332 (477)
T 2id5_A 327 LDSNPL 332 (477)
T ss_dssp CCSSCE
T ss_pred ccCCCc
Confidence 999983
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.2e-29 Score=269.25 Aligned_cols=305 Identities=17% Similarity=0.243 Sum_probs=259.1
Q ss_pred hhcCCCCcceEEecCccccC--cccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEE
Q 005207 40 AFSLMTNLGLLKINNVQLLE--GLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMK 117 (709)
Q Consensus 40 ~f~~l~~L~~L~l~~~~l~~--~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 117 (709)
.+..+++|+.|+++++.+.. ++..+ ++|++|++++|.++.+|....+++|++|++++|.++.++ .+..+++|++|+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYL-TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred cchhcccccEEEEeCCccccchhhhhc-CCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 45678999999999988763 44555 599999999999999988448999999999999999885 689999999999
Q ss_pred cCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccC
Q 005207 118 LSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDG 197 (709)
Q Consensus 118 Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~ 197 (709)
+++|++....+ +..+++|++|++++|.....++. +..+++|++|++++|.+....+ +..+++|+.|++++
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-------~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-------LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccc-------hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence 99998765444 88999999999999865554432 4557889999999998776544 88999999999999
Q ss_pred CCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcc
Q 005207 198 TDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS 277 (709)
Q Consensus 198 ~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~ 277 (709)
|.+..++. +..+++|+.|++++|..... +. +..+++|++|++++|.+....+ +..+++|++|++++|.+..++ .
T Consensus 187 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~ 260 (347)
T 4fmz_A 187 NQIEDISP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN-A 260 (347)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-G
T ss_pred Cccccccc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh-h
Confidence 99998887 88999999999999765543 33 7889999999999998876544 888999999999999999874 5
Q ss_pred cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcE
Q 005207 278 IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRT 357 (709)
Q Consensus 278 ~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~ 357 (709)
+..+++|+.|++++|.+.+. ..+..+++|++|++++|...+..+..++.+++|+.|++++|.++.+++ +..+++|++
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 337 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDS 337 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSE
T ss_pred HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccce
Confidence 88999999999999987654 457889999999999999988888889999999999999999998877 888999999
Q ss_pred EEccCCCC
Q 005207 358 LSFSGCNG 365 (709)
Q Consensus 358 L~L~~~~~ 365 (709)
|++++|..
T Consensus 338 L~l~~N~i 345 (347)
T 4fmz_A 338 ADFANQVI 345 (347)
T ss_dssp ESSSCC--
T ss_pred eehhhhcc
Confidence 99999873
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=3.8e-29 Score=277.34 Aligned_cols=315 Identities=22% Similarity=0.216 Sum_probs=181.9
Q ss_pred ccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccc-cccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCc
Q 005207 68 LRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCT 145 (709)
Q Consensus 68 L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~ 145 (709)
-+.++.++..++.+|..+ +.++++|+|++|+|+.++ ..+..+++|++|+|++|.+....+ .|.++++|++|+|++|
T Consensus 13 ~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n- 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN- 90 (477)
T ss_dssp TTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-
Confidence 346667777777777654 356777777777777664 456777777777777776655433 4666666666666665
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCcccc-CcccccCCCCcEEecCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKEL-PLSIEHLFGLVQLTLNDCKNL 224 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~~l 224 (709)
.+..+|. ..+.++++|++|++++|.+..+ |..+..+++|+.|++++|...
T Consensus 91 ~l~~~~~-----------------------------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 141 (477)
T 2id5_A 91 RLKLIPL-----------------------------GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141 (477)
T ss_dssp CCCSCCT-----------------------------TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC
T ss_pred cCCccCc-----------------------------ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc
Confidence 3333332 2233334444444444443322 222333333333333333332
Q ss_pred CcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccC
Q 005207 225 SSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSING 304 (709)
Q Consensus 225 ~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~ 304 (709)
...+..+.++++|++|++++|.+....+..+..+++|+.|++++|.+. +..+..+..
T Consensus 142 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-----------------------~~~~~~~~~ 198 (477)
T 2id5_A 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-----------------------AIRDYSFKR 198 (477)
T ss_dssp EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC-----------------------EECTTCSCS
T ss_pred eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc-----------------------EeChhhccc
Confidence 222333444555555555555444443444444445555555444444 333334445
Q ss_pred CCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCc-ccccccCCcEEEccCCCCCCCCCccccccccccccC
Q 005207 305 LKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS-SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 383 (709)
Q Consensus 305 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 383 (709)
+++|+.|++++|...+.++.......+|+.|++++|.++.+|. .+..+++|++|++++|.....
T Consensus 199 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------------- 263 (477)
T 2id5_A 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI--------------- 263 (477)
T ss_dssp CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE---------------
T ss_pred CcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc---------------
Confidence 5555555555555555554444444466666666666665553 345566666666666652211
Q ss_pred ccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChh-hhcCCCcCeeccccccc
Q 005207 384 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPAS-INSLLNLKELEMEDCKR 459 (709)
Q Consensus 384 ~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~~ 459 (709)
....+.++++|+.|+|++|++. +..|..+..+++|+.|+|++|+++.++.. +..+++|+.|++++|+.
T Consensus 264 -------~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 264 -------EGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp -------CTTSCTTCTTCCEEECCSSCCS-EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred -------ChhhccccccCCEEECCCCccc-eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 1112667788888888888885 55677888888999999999988887764 57788888888888863
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=8.4e-29 Score=271.74 Aligned_cols=322 Identities=17% Similarity=0.112 Sum_probs=212.4
Q ss_pred cCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCc
Q 005207 66 NKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 145 (709)
++|++|++++|.++.+|....+++|++|++++|+++.++ +..+++|++|++++|++... + ++.+++|++|++++|
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~N- 116 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDTN- 116 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCSS-
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCCC-
Confidence 478888888888888874447788888888888888775 77788888888888876553 2 777788888888776
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCC-CccccCcccccCCCCcEEecCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGT-DIKELPLSIEHLFGLVQLTLNDCKNL 224 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~-~i~~lp~~l~~l~~L~~L~L~~~~~l 224 (709)
.+..++ +..+++|++|++++|.+.+. + ++.+++|++|++++| .+..+ .+..+++|+.|++++|..
T Consensus 117 ~l~~l~--------~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l- 182 (457)
T 3bz5_A 117 KLTKLD--------VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI- 182 (457)
T ss_dssp CCSCCC--------CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC-
T ss_pred cCCeec--------CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc-
Confidence 344432 23356677777777766553 2 566667777777666 33344 355666666666666543
Q ss_pred CcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccC
Q 005207 225 SSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSING 304 (709)
Q Consensus 225 ~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~ 304 (709)
..+| +..+++|+.|++++|.+... .+..+++|++|++++|.++.+| ++.+++|+.|++++|.+.+.. +..
T Consensus 183 ~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~---~~~ 252 (457)
T 3bz5_A 183 TELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD---VST 252 (457)
T ss_dssp CCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred ceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC---HHH
Confidence 3344 55666666666666665543 2556666666666666666665 566666666666666655432 344
Q ss_pred CCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc-cCCcccccccCCcEEEccCCCCCCCCCccccccccccccC
Q 005207 305 LKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGK 383 (709)
Q Consensus 305 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~ 383 (709)
+++|+.|+++++ +|+.|++++|... .+| ...+++|+.|++++|......+..
T Consensus 253 l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~----------- 305 (457)
T 3bz5_A 253 LSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ----------- 305 (457)
T ss_dssp CTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT-----------
T ss_pred CCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC-----------
Confidence 566666665542 4677777777654 333 456899999999999854332210
Q ss_pred ccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccc
Q 005207 384 SSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC 457 (709)
Q Consensus 384 ~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 457 (709)
..... .+ .+.++++|+.|++++|+++. + .++.+++|+.|++++|+++.+ +.|..|++++|
T Consensus 306 ~~~L~--~L-~l~~~~~L~~L~L~~N~l~~--l--~l~~l~~L~~L~l~~N~l~~l-------~~L~~L~l~~n 365 (457)
T 3bz5_A 306 AAGIT--EL-DLSQNPKLVYLYLNNTELTE--L--DVSHNTKLKSLSCVNAHIQDF-------SSVGKIPALNN 365 (457)
T ss_dssp TCCCS--CC-CCTTCTTCCEEECTTCCCSC--C--CCTTCTTCSEEECCSSCCCBC-------TTGGGSSGGGT
T ss_pred CCcce--Ee-chhhcccCCEEECCCCcccc--c--ccccCCcCcEEECCCCCCCCc-------cccccccccCC
Confidence 00011 11 26677899999999999963 4 388899999999999998875 35556666655
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.3e-28 Score=265.55 Aligned_cols=282 Identities=16% Similarity=0.154 Sum_probs=234.9
Q ss_pred cCccEEEeeCCCCCCCCCcC--CcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCCC-CCCCCCccEEec
Q 005207 66 NKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTPD-FTEAPNLEELYL 141 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L 141 (709)
.++++|+++++.++.+|..+ .+++|++|++++|.++.++. .+..+++|++|+|++|.+....+. +.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 58889999999888888764 78899999999999998774 788999999999999988777664 789999999999
Q ss_pred cCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCC
Q 005207 142 EGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDC 221 (709)
Q Consensus 142 ~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~ 221 (709)
++| .+..+|..+ +..+++|++|++++|.+.+..+..++.+++|++|++++|.++.++ +..+++|+.|++++|
T Consensus 125 ~~n-~l~~l~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 125 ERN-DLSSLPRGI-----FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN 196 (390)
T ss_dssp CSS-CCCCCCTTT-----TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSS
T ss_pred CCC-ccCcCCHHH-----hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccc
Confidence 997 566666543 223678999999999988888888999999999999999998775 677889999999987
Q ss_pred CCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCcccccc
Q 005207 222 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSS 301 (709)
Q Consensus 222 ~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~ 301 (709)
... . +...++|++|++++|.+... +. ...++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..|..
T Consensus 197 ~l~-~----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 197 LLS-T----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp CCS-E----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccc-c----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhH
Confidence 532 2 33456899999999887654 22 2357899999999999876 46788999999999999988888888
Q ss_pred ccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCC
Q 005207 302 INGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 302 ~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~ 365 (709)
+..+++|++|++++|.+.+ ++..+..+++|++|++++|.+..+|..+..+++|++|++++|..
T Consensus 268 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcc
Confidence 9999999999999987655 45566788999999999999999998888999999999999873
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.5e-28 Score=265.21 Aligned_cols=263 Identities=16% Similarity=0.131 Sum_probs=174.6
Q ss_pred cCCcCCceEEEcccCCccccccc-cccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCcccccccccc
Q 005207 84 NLQLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLI 161 (709)
Q Consensus 84 ~~~l~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~ 161 (709)
...+.++++|+++++.++.+|.. +..+++|++|+|++|.+....+ .|..+++|++|++++| .+..+++.. +.
T Consensus 41 ~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~ 114 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV-----FQ 114 (390)
T ss_dssp SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTT-----TT
T ss_pred ccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHH-----hc
Confidence 34779999999999999999866 6889999999999998877665 6889999999999987 455544321 22
Q ss_pred cCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCc-ccccCCCCcEEecCCCCCCCcCcccccCCccCcEE
Q 005207 162 FVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNL 240 (709)
Q Consensus 162 ~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 240 (709)
.+++|++|++++|.+....+..++.+++|++|++++|.+..++. .+..+++|+.|++++|.... ++ +..+++|+.|
T Consensus 115 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l~~L~~L 191 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHA 191 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--GGGCTTCSEE
T ss_pred CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--ccccccccee
Confidence 35677778887777665544556777777777777777776543 46677777777777765433 22 4556677777
Q ss_pred eeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCc
Q 005207 241 KLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE 320 (709)
Q Consensus 241 ~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~ 320 (709)
++++|.+.. +...++|++|++++|.+..++.. ..++|+.|++++|.+.+. ..+..+++|++|++++|.+.+
T Consensus 192 ~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 192 NVSYNLLST-----LAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp ECCSSCCSE-----EECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred ecccccccc-----cCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence 777665432 22334667777777766665442 245666666666665442 345566666666666666655
Q ss_pred cCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCC
Q 005207 321 NVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 321 ~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~ 364 (709)
..|..+..+++|+.|++++|.++.++.....+++|++|++++|+
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc
Confidence 55566666666666666666665555444445555555555544
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=6e-28 Score=274.93 Aligned_cols=282 Identities=16% Similarity=0.154 Sum_probs=239.3
Q ss_pred cCccEEEeeCCCCCCCCCcC--CcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCCC-CCCCCCccEEec
Q 005207 66 NKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTPD-FTEAPNLEELYL 141 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~-~~~l~~L~~L~L 141 (709)
.+++.|+++++.+..+|..+ .+++|++|+|++|.|+.++. .+..+++|++|+|++|.+...++. |+++++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 58899999999999999865 78999999999999998874 789999999999999998777664 789999999999
Q ss_pred cCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCC
Q 005207 142 EGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDC 221 (709)
Q Consensus 142 ~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~ 221 (709)
++| .+..+|+.+. ..+++|++|++++|.+.+..|..++.+++|+.|++++|.+..++ +..+++|+.|++++|
T Consensus 131 ~~n-~l~~l~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 131 ERN-DLSSLPRGIF-----HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN 202 (597)
T ss_dssp CSS-CCCCCCTTTT-----TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSS
T ss_pred eCC-CCCCCCHHHh-----ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccC
Confidence 998 5667776542 23688999999999999888889999999999999999999875 667899999999987
Q ss_pred CCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCcccccc
Q 005207 222 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSS 301 (709)
Q Consensus 222 ~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~ 301 (709)
... . +...++|+.|++++|.+....+.. .++|+.|++++|.++.. ..+..+++|+.|++++|.+.+..|..
T Consensus 203 ~l~-~----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 203 LLS-T----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp CCS-E----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccc-c----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHH
Confidence 543 2 344678999999998876543322 36899999999999875 56888999999999999998888999
Q ss_pred ccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCC
Q 005207 302 INGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 302 ~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~ 365 (709)
+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+..+|..+..+++|++|++++|..
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCC
Confidence 9999999999999987765 56667788999999999999999999999999999999999884
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.1e-27 Score=272.65 Aligned_cols=309 Identities=16% Similarity=0.145 Sum_probs=227.3
Q ss_pred cCCcCCceEEEcccCCccccccc-cccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCcccccccccc
Q 005207 84 NLQLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLI 161 (709)
Q Consensus 84 ~~~l~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~ 161 (709)
...+.+++.|+++++.++.+|.. +..+++|++|+|++|.+....+ .|+.+++|++|+|++| .+..+++.. +.
T Consensus 47 ~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~ 120 (597)
T 3oja_B 47 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHV-----FQ 120 (597)
T ss_dssp SGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTT-----TT
T ss_pred cccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHH-----Hc
Confidence 34678999999999999999865 6889999999999999877765 6999999999999998 456555432 22
Q ss_pred cCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCc-ccccCCCCcEEecCCCCCCCcCcccccCCccCcEE
Q 005207 162 FVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNL 240 (709)
Q Consensus 162 ~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 240 (709)
.+++|++|++++|.+.+..+..++.+++|++|++++|.+..++. .+..+++|+.|++++|.... ++ ++.+++|+.|
T Consensus 121 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L 197 (597)
T 3oja_B 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHA 197 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--GGGCTTCSEE
T ss_pred CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--hhhhhhhhhh
Confidence 36788889999888876666667888899999999888886654 57888888888888876443 33 5567888888
Q ss_pred eeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCc
Q 005207 241 KLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE 320 (709)
Q Consensus 241 ~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~ 320 (709)
++++|.+.. +...++|+.|++++|.+..++..+ .++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+
T Consensus 198 ~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 198 NVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp ECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred hcccCcccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence 888876543 234557888888888888766543 3678888888887665 3567778888888888888777
Q ss_pred cCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCC
Q 005207 321 NVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRS 400 (709)
Q Consensus 321 ~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~ 400 (709)
..|..++.+++|+.|++++|.++.+|..+..+++|+.|++++|..... .+.+..+++
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i-----------------------~~~~~~l~~ 325 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV-----------------------ERNQPQFDR 325 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCC-----------------------GGGHHHHTT
T ss_pred CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCcc-----------------------CcccccCCC
Confidence 777777788888888888888777776666677777777777663211 011344566
Q ss_pred CCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc
Q 005207 401 LTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV 437 (709)
Q Consensus 401 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 437 (709)
|+.|+|++|.+.. ++ +..+++|+.|++++|++.
T Consensus 326 L~~L~L~~N~l~~--~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 326 LENLYLDHNSIVT--LK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CSEEECCSSCCCC--CC--CCTTCCCSEEECCSSCEE
T ss_pred CCEEECCCCCCCC--cC--hhhcCCCCEEEeeCCCCC
Confidence 6667776666642 22 555666666666666655
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=6.1e-27 Score=246.49 Aligned_cols=284 Identities=19% Similarity=0.242 Sum_probs=166.1
Q ss_pred CccEEEeeCCCCCCCCCcCCcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCC
Q 005207 67 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGC 144 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~ 144 (709)
+++.++++++.++.+|..+. ++|++|++++|+|+.++. .+..+++|++|+|++|++....| .|..+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 45555555555555554432 455666666666665553 45566666666666665554433 4556666666666665
Q ss_pred ccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCcc---ccCcccccCCCCcEEecCCC
Q 005207 145 TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK---ELPLSIEHLFGLVQLTLNDC 221 (709)
Q Consensus 145 ~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~---~lp~~l~~l~~L~~L~L~~~ 221 (709)
.+..+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|
T Consensus 111 -~l~~l~~~~~--------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 111 -QLKELPEKMP--------KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp -CCSBCCSSCC--------TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred -cCCccChhhc--------ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 3444444322 35666666666665555555666666666666666654 23445566666666666665
Q ss_pred CCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCccccc
Q 005207 222 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPS 300 (709)
Q Consensus 222 ~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~ 300 (709)
.. ..+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+..++. .+..+++|+.|++++|.+. .+|.
T Consensus 182 ~l-~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 257 (330)
T 1xku_A 182 NI-TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257 (330)
T ss_dssp CC-CSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred cc-ccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh
Confidence 43 33444332 566666666666666556666666666666666666665543 4566666666666666544 5566
Q ss_pred cccCCCCCCEEEeeCcCCCccCCccccC------CCccceeecccccccc--C-CcccccccCCcEEEccCCC
Q 005207 301 SINGLKSLKTLNLSGCCKLENVPDTLGQ------VESLEELDISETAVRR--P-PSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 301 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~------l~~L~~L~L~~n~i~~--l-~~~~~~l~~L~~L~L~~~~ 364 (709)
.+..+++|++|++++|.+.+..+..+.. .+.|+.|++++|.+.. + |..+..+++++.+++++|+
T Consensus 258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 6666666777777766665544444322 3567777777777752 2 3455567788888887764
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=9.9e-27 Score=244.88 Aligned_cols=242 Identities=19% Similarity=0.200 Sum_probs=182.3
Q ss_pred CCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCc
Q 005207 88 DKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESL 166 (709)
Q Consensus 88 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L 166 (709)
.+++.++++++.++.+|..+. ++|+.|+|++|++....+ .|.++++|++|++++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n---------------------- 86 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN---------------------- 86 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS----------------------
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC----------------------
Confidence 367778888888877776543 567777777776655544 3566666666666655
Q ss_pred cEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCC
Q 005207 167 KILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCS 246 (709)
Q Consensus 167 ~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~ 246 (709)
.+.+..|..++.+++|++|++++|.++.+|..+. ++|++|++++|......+..+.++++|++|++++|.
T Consensus 87 --------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 87 --------KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp --------CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred --------cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc
Confidence 3444445666677777777777777777776654 678888888876665555567888888888888887
Q ss_pred CCC--cCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCc
Q 005207 247 KLK--KFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD 324 (709)
Q Consensus 247 ~~~--~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~ 324 (709)
+.. ..+..+..+++|++|++++|.++.+|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 157 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 234 (330)
T 1xku_A 157 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234 (330)
T ss_dssp CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred CCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh
Confidence 753 566778888999999999999988887654 7899999999888777778888888999999998888777777
Q ss_pred cccCCCccceeeccccccccCCcccccccCCcEEEccCCCC
Q 005207 325 TLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 325 ~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~ 365 (709)
.+..+++|++|++++|.++.+|..+..+++|++|++++|+.
T Consensus 235 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 235 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp TGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred hccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcC
Confidence 78888888888888888888887777777777777777763
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=5.6e-27 Score=247.02 Aligned_cols=283 Identities=19% Similarity=0.249 Sum_probs=155.6
Q ss_pred CccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccc-cccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCC
Q 005207 67 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGC 144 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~ 144 (709)
+++.++++++.++.+|..+ .++|++|++++|+|+.++ ..+..+++|++|+|++|++....+ .|.++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 3455555555555555443 245555555555555543 345555555555555555444432 3555555555555554
Q ss_pred ccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCcc---ccCcccccCCCCcEEecCCC
Q 005207 145 TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK---ELPLSIEHLFGLVQLTLNDC 221 (709)
Q Consensus 145 ~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~---~lp~~l~~l~~L~~L~L~~~ 221 (709)
.+..+|..+. ++|++|++++|.+....+..+..+++|+.|++++|.++ ..+..+..+ +|+.|++++|
T Consensus 113 -~l~~l~~~~~--------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 113 -HLVEIPPNLP--------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp -CCCSCCSSCC--------TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred -cCCccCcccc--------ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 3344443322 34555555555555444445555666666666666554 223344444 5666666654
Q ss_pred CCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCccccc
Q 005207 222 KNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPS 300 (709)
Q Consensus 222 ~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~ 300 (709)
.. ..+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+..++. .+..+++|+.|++++|.+. .+|.
T Consensus 183 ~l-~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 258 (332)
T 2ft3_A 183 KL-TGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258 (332)
T ss_dssp BC-SSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT
T ss_pred CC-CccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecCh
Confidence 42 33444332 566666666666655555566666666666666666665543 4566666666666666544 5555
Q ss_pred cccCCCCCCEEEeeCcCCCccCCccccC------CCccceeeccccccc--cC-CcccccccCCcEEEccCCC
Q 005207 301 SINGLKSLKTLNLSGCCKLENVPDTLGQ------VESLEELDISETAVR--RP-PSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 301 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~------l~~L~~L~L~~n~i~--~l-~~~~~~l~~L~~L~L~~~~ 364 (709)
.+..+++|++|++++|.+.+..+..+.. .++|+.|++++|.+. .+ |..+..+++|+.+++++|+
T Consensus 259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5666666666666666655544444432 356777777777766 33 3445667888888887765
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=2e-26 Score=242.84 Aligned_cols=239 Identities=17% Similarity=0.187 Sum_probs=166.2
Q ss_pred CceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCcc
Q 005207 89 KIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLK 167 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~ 167 (709)
+++.++++++.++.+|..+. ++|+.|++++|.+....+ .|.++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n----------------------- 88 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN----------------------- 88 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-----------------------
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-----------------------
Confidence 56777777777777765542 566666666666554433 3555555555555554
Q ss_pred EEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCC
Q 005207 168 ILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSK 247 (709)
Q Consensus 168 ~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~ 247 (709)
.+.+..|..++.+++|++|++++|.+..+|..+. ++|++|++++|......+..+.++++|++|++++|.+
T Consensus 89 -------~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 89 -------KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp -------CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred -------ccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 3333445556666777777777777777766554 6777777777665444444577778888888888776
Q ss_pred CC--cCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCcc
Q 005207 248 LK--KFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDT 325 (709)
Q Consensus 248 ~~--~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~ 325 (709)
.. ..+..+..+ +|++|++++|.++.+|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..
T Consensus 160 ~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 160 ENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp BGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred ccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 42 455666666 78888888888888876553 67888888888777776677777888888888888777766667
Q ss_pred ccCCCccceeeccccccccCCcccccccCCcEEEccCCC
Q 005207 326 LGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 326 l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~ 364 (709)
+..+++|+.|++++|.++.+|..+..+++|++|++++|+
T Consensus 237 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC
T ss_pred hhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC
Confidence 777788888888888887777777777777777777666
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=9.9e-27 Score=242.73 Aligned_cols=246 Identities=15% Similarity=0.214 Sum_probs=183.0
Q ss_pred CCceEEEcccCCcc---ccccccccccCCcEEEcCC-CCCCCCCC-CCCCCCCccEEeccCCccccccCccccccccccc
Q 005207 88 DKIVEFKMCYSRIE---ELWKGIKHLNMLKVMKLSH-SENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF 162 (709)
Q Consensus 88 ~~L~~L~Ls~n~i~---~l~~~~~~l~~L~~L~Ls~-~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~ 162 (709)
.++++|+|++++++ .+|..+..+++|++|+|++ |.+....| .+.++++|++|++++|.....+|..+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~------ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ------ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC------
Confidence 68889999998888 4788888888888888885 76665554 5788888888888887433355554443
Q ss_pred CCCccEEEccCCCCCCcCCccccCCCccceeeccCCCcc-ccCcccccCC-CCcEEecCCCCCCCcCcccccCCccCcEE
Q 005207 163 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK-ELPLSIEHLF-GLVQLTLNDCKNLSSLPVAISSFQCLRNL 240 (709)
Q Consensus 163 l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~-~lp~~l~~l~-~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 240 (709)
+++|++|++++|.+.+.+|..+..+++|++|++++|.++ .+|..+..+. +|+.|++++|...+.+|..+..++ |++|
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 567778888888877778888888888888888888887 7777777777 788888887776667777777666 7888
Q ss_pred eeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCc
Q 005207 241 KLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE 320 (709)
Q Consensus 241 ~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~ 320 (709)
++++|.+.+..|..+..+++|+.|++++|.+...+..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 88777777777777777777777777777777555556667777777777777766677777777777777777777666
Q ss_pred cCCccccCCCccceeeccccc
Q 005207 321 NVPDTLGQVESLEELDISETA 341 (709)
Q Consensus 321 ~~~~~l~~l~~L~~L~L~~n~ 341 (709)
.+|.. +.+++|+.|++++|.
T Consensus 283 ~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 283 EIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCCS-TTGGGSCGGGTCSSS
T ss_pred cCCCC-ccccccChHHhcCCC
Confidence 66654 566666667666665
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1e-26 Score=242.71 Aligned_cols=251 Identities=20% Similarity=0.297 Sum_probs=148.1
Q ss_pred CccEEEccCCCCCC--cCCccccCCCccceeeccC-CCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEe
Q 005207 165 SLKILILSGCLKLR--KFPHVVGSMECLQELLLDG-TDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLK 241 (709)
Q Consensus 165 ~L~~L~Ls~~~~~~--~~~~~l~~l~~L~~L~l~~-~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 241 (709)
+++.|++++|.+.+ .+|..++++++|++|++++ |.+. +.+|..++++++|++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~-----------------------~~~p~~l~~l~~L~~L~ 107 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-----------------------GPIPPAIAKLTQLHYLY 107 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE-----------------------SCCCGGGGGCTTCSEEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc-----------------------ccCChhHhcCCCCCEEE
Confidence 45555555555554 4555555555555555552 4443 33343444444444444
Q ss_pred eeCCCCCCcCchhhccCCCCCeeeccCccCc-ccCcccCCCCCCCEEeccCCCCCccccccccCCC-CCCEEEeeCcCCC
Q 005207 242 LSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSINGLK-SLKTLNLSGCCKL 319 (709)
Q Consensus 242 Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~-~L~~L~L~~~~~~ 319 (709)
+++|.+.+..|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.
T Consensus 108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 4444444444444444444444444444444 3444444455555555555554444555555554 5555555555555
Q ss_pred ccCCccccCCCccceeeccccccc-cCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCC
Q 005207 320 ENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGL 398 (709)
Q Consensus 320 ~~~~~~l~~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l 398 (709)
+.+|..+..++ |+.|++++|.+. ..|..+..+++|++|++++|.... .+|.+..+
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------------~~~~~~~l 243 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF-----------------------DLGKVGLS 243 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC-----------------------BGGGCCCC
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee-----------------------ecCccccc
Confidence 55555555554 556666665555 334445556666666666665221 12225567
Q ss_pred CCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc-ccChhhhcCCCcCeeccccccccccCC
Q 005207 399 RSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV-TLPASINSLLNLKELEMEDCKRLQFLP 464 (709)
Q Consensus 399 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp 464 (709)
++|+.|+|++|++. +.+|..+..+++|+.|+|++|+++ .+|.. ..+++|+.|++++|+.+...|
T Consensus 244 ~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 244 KNLNGLDLRNNRIY-GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TTCCEEECCSSCCE-ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CCCCEEECcCCccc-CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 88888999999885 568889999999999999999998 66755 889999999999998776543
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=6.1e-29 Score=274.42 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=17.8
Q ss_pred CCCCEEEcCCCCCc-----ccChhhhcCCCcCeeccccc
Q 005207 424 HSLNELYLSKNNFV-----TLPASINSLLNLKELEMEDC 457 (709)
Q Consensus 424 ~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c 457 (709)
++|++|++++|+++ .+|..+..+++|++|++++|
T Consensus 370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 45555555555554 34445555555555555555
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=2.1e-28 Score=270.04 Aligned_cols=348 Identities=21% Similarity=0.177 Sum_probs=249.8
Q ss_pred CcCccEEEeeCCCCCCCCCc--C-CcCCceEEEcccCCcc-----ccccccccccCCcEEEcCCCCCCCCCC-C-CCCCC
Q 005207 65 SNKLRLLDWHRYPLKSLPSN--L-QLDKIVEFKMCYSRIE-----ELWKGIKHLNMLKVMKLSHSENLIKTP-D-FTEAP 134 (709)
Q Consensus 65 ~~~L~~L~l~~~~l~~lp~~--~-~l~~L~~L~Ls~n~i~-----~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~-~~~l~ 134 (709)
|++|++|+++++.++..+.. + .+++|++|++++|+++ .++..+..+++|++|+|++|.+....+ . +..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 56899999999998766532 3 7889999999999988 456778888999999999998654321 1 12233
Q ss_pred ----CccEEeccCCcccc-----ccCcccccccccccCCCccEEEccCCCCCCcCCcc-----ccCCCccceeeccCCCc
Q 005207 135 ----NLEELYLEGCTKLR-----KVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHV-----VGSMECLQELLLDGTDI 200 (709)
Q Consensus 135 ----~L~~L~L~~~~~l~-----~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~-----l~~l~~L~~L~l~~~~i 200 (709)
+|++|++++|. +. .++. .+..+++|++|++++|.+....+.. ....++|++|++++|.+
T Consensus 82 ~~~~~L~~L~L~~n~-i~~~~~~~l~~------~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC-LTGAGCGVLSS------TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp STTCCCCEEECTTSC-CBGGGHHHHHH------HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred hCCCceeEEEccCCC-CCHHHHHHHHH------HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC
Confidence 79999999984 33 2232 2344678999999999876443332 23356899999999988
Q ss_pred cc-----cCcccccCCCCcEEecCCCCCCCcCccccc-----CCccCcEEeeeCCCCCCc----CchhhccCCCCCeeec
Q 005207 201 KE-----LPLSIEHLFGLVQLTLNDCKNLSSLPVAIS-----SFQCLRNLKLSGCSKLKK----FPQIVTTMEDLSELNL 266 (709)
Q Consensus 201 ~~-----lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~-----~l~~L~~L~Ls~~~~~~~----~~~~~~~l~~L~~L~L 266 (709)
+. ++..+..+++|++|++++|......+..+. ..++|++|++++|.+... ++..+..+++|++|++
T Consensus 155 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 155 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234 (461)
T ss_dssp BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEec
Confidence 73 566778889999999999875433222222 356899999999987664 4667778899999999
Q ss_pred cCccCccc------CcccCCCCCCCEEeccCCCCCcc----ccccccCCCCCCEEEeeCcCCCccCCcccc-----CCCc
Q 005207 267 DGTSITEV------PSSIELLPGLELLNLNDCKNFAR----VPSSINGLKSLKTLNLSGCCKLENVPDTLG-----QVES 331 (709)
Q Consensus 267 ~~~~i~~l------~~~~~~l~~L~~L~L~~~~~~~~----l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~-----~l~~ 331 (709)
++|.+... +..+..+++|++|++++|.+... ++..+..+++|++|++++|.+....+..+. ..++
T Consensus 235 s~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred cCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 99988743 22234688999999999977654 566677789999999999876543332222 2368
Q ss_pred cceeecccccccc-----CCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCC-CCC-CCCCCCEE
Q 005207 332 LEELDISETAVRR-----PPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLP-SLS-GLRSLTKL 404 (709)
Q Consensus 332 L~~L~L~~n~i~~-----l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp-~l~-~l~~L~~L 404 (709)
|+.|++++|.++. ++..+..+++|++|++++|....... ..+. .+. ..++|+.|
T Consensus 315 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-------------------~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV-------------------RELCQGLGQPGSVLRVL 375 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH-------------------HHHHHHHTSTTCCCCEE
T ss_pred ceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH-------------------HHHHHHHcCCCCceEEE
Confidence 9999999998874 35566678999999999886211000 0000 011 25789999
Q ss_pred eccCCCCCC---CCCCCCCCCCCCCCEEEcCCCCCcc
Q 005207 405 DLSDCGLGE---GAIPSDIGNLHSLNELYLSKNNFVT 438 (709)
Q Consensus 405 ~Ls~n~l~~---~~~~~~l~~l~~L~~L~L~~n~l~~ 438 (709)
++++|++++ ..++..+..+++|++|++++|+++.
T Consensus 376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 999998852 1567777788999999999998873
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=6.3e-25 Score=230.52 Aligned_cols=229 Identities=25% Similarity=0.349 Sum_probs=149.7
Q ss_pred cCccEEEeeCCCCCCCCCcC-CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCC
Q 005207 66 NKLRLLDWHRYPLKSLPSNL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC 144 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~ 144 (709)
.+++.|++++|.++.+|..+ .+++|++|+|++|.++.+|..+..+++|++|+|++|++...++.+..+++|++|++++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence 47778888888888887766 67788888888888887777778888888888888877644445777778888888777
Q ss_pred ccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCC
Q 005207 145 TKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL 224 (709)
Q Consensus 145 ~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l 224 (709)
.....+|..++... ++..+..+++|++|++++|.++.+|..++.+++|+.|++++|...
T Consensus 161 ~~~~~~p~~~~~~~---------------------~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 161 PELTELPEPLASTD---------------------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp TTCCCCCSCSEEEC----------------------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC
T ss_pred CCccccChhHhhcc---------------------chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC
Confidence 66666666554310 111233355555555555555555555555555555555554433
Q ss_pred CcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCc-ccCcccCCCCCCCEEeccCCCCCcccccccc
Q 005207 225 SSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSIT-EVPSSIELLPGLELLNLNDCKNFARVPSSIN 303 (709)
Q Consensus 225 ~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~ 303 (709)
.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|...+.+|..+.
T Consensus 220 -~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 -ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp -CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred -cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 34444555566666666666655555555666666666666665443 5555666677777777777777777777777
Q ss_pred CCCCCCEEEeeCc
Q 005207 304 GLKSLKTLNLSGC 316 (709)
Q Consensus 304 ~l~~L~~L~L~~~ 316 (709)
.+++|+.+.+..+
T Consensus 299 ~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 299 QLPANCIILVPPH 311 (328)
T ss_dssp GSCTTCEEECCGG
T ss_pred hccCceEEeCCHH
Confidence 7777777777654
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=8.5e-25 Score=229.53 Aligned_cols=199 Identities=23% Similarity=0.411 Sum_probs=163.1
Q ss_pred CCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCccccc---------CC
Q 005207 164 ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAIS---------SF 234 (709)
Q Consensus 164 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~---------~l 234 (709)
++|++|++++|.+. .+|..++.+++|++|++++|.+..+|..+..+++|+.|++++|+..+.+|..+. ++
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 34444555555444 455666666777777777777777777777777777777777777777776554 38
Q ss_pred ccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEee
Q 005207 235 QCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLS 314 (709)
Q Consensus 235 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~ 314 (709)
++|++|++++|.+. .+|..+..+++|++|++++|.+..+|..++.+++|+.|++++|...+.+|..+..+++|++|+++
T Consensus 183 ~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 183 VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence 89999999998777 77888899999999999999999998889999999999999999999999999999999999999
Q ss_pred CcCCCccCCccccCCCccceeeccccccc-cCCcccccccCCcEEEccCCC
Q 005207 315 GCCKLENVPDTLGQVESLEELDISETAVR-RPPSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 315 ~~~~~~~~~~~l~~l~~L~~L~L~~n~i~-~l~~~~~~l~~L~~L~L~~~~ 364 (709)
+|...+.+|..++.+++|+.|++++|.+. .+|..+..+++|+.+++..+.
T Consensus 262 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 99999999999999999999999998765 789999999999999988654
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=2.7e-24 Score=228.46 Aligned_cols=251 Identities=16% Similarity=0.186 Sum_probs=188.2
Q ss_pred ccceeeccCCCccccCc-ccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeecc
Q 005207 189 CLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLD 267 (709)
Q Consensus 189 ~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~ 267 (709)
+|++|++++|.++.++. .+.++++|+.|++++|......|..+.++++|++|++++|.+....+..+.++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 56666666666666554 56666677777777665544445567778888888888887776656668888889999999
Q ss_pred CccCcccCc--ccCCCCCCCEEeccCCCCC-ccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccccccc
Q 005207 268 GTSITEVPS--SIELLPGLELLNLNDCKNF-ARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 344 (709)
Q Consensus 268 ~~~i~~l~~--~~~~l~~L~~L~L~~~~~~-~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~ 344 (709)
+|.+..+|. .+..+++|++|++++|... ...+..+.++++|++|++++|...+..|..++.+++|++|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 998888876 6888999999999988544 4445678889999999999998888888889999999999999999887
Q ss_pred CCcccc-cccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCC---CCCCCC
Q 005207 345 PPSSVF-LMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEG---AIPSDI 420 (709)
Q Consensus 345 l~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~---~~~~~l 420 (709)
+|..+. .+++|++|++++|........ .++.....+.++.++++++.+.+. .+|..+
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l 273 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFS-------------------ELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred chhhhhhhcccccEEECCCCcccccccc-------------------ccccccccchhhccccccccccCcchhhhHHHH
Confidence 776654 488999999999874432110 112233456788888888877531 245667
Q ss_pred CCCCCCCEEEcCCCCCcccChhh-hcCCCcCeecccccc
Q 005207 421 GNLHSLNELYLSKNNFVTLPASI-NSLLNLKELEMEDCK 458 (709)
Q Consensus 421 ~~l~~L~~L~L~~n~l~~lp~~i-~~l~~L~~L~L~~c~ 458 (709)
..+++|+.|++++|+++.+|..+ ..+++|++|++++|+
T Consensus 274 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 78889999999999998888875 788888888888885
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=2.9e-24 Score=223.44 Aligned_cols=242 Identities=18% Similarity=0.169 Sum_probs=115.8
Q ss_pred EEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccc-cccccCCcEEEcCCCCCCCC---CCCCCCCCCccEEeccCCc
Q 005207 70 LLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIK---TPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 70 ~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~Ls~~~~~~~---~~~~~~l~~L~~L~L~~~~ 145 (709)
.++++++.++.+|..+. ++|++|++++|+++.++.. +..+++|++|+|++|++... ...+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n- 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN- 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-
T ss_pred EEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-
Confidence 34444444444444332 3455555555555544433 34455555555555543322 112333444555555444
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCC-ccccCCCccceeeccCCCccc-cCcccccCCCCcEEecCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP-HVVGSMECLQELLLDGTDIKE-LPLSIEHLFGLVQLTLNDCKN 223 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~-~~l~~l~~L~~L~l~~~~i~~-lp~~l~~l~~L~~L~L~~~~~ 223 (709)
.+..+|..+. .+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.. .+..+..+++|++|++++|..
T Consensus 89 ~i~~l~~~~~------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 89 GVITMSSNFL------GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp SEEEEEEEEE------TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred ccccChhhcC------CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 2233332221 13444444444444433322 344445555555555555442 223344455555555555443
Q ss_pred CC-cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCcccccc
Q 005207 224 LS-SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSS 301 (709)
Q Consensus 224 l~-~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~ 301 (709)
.+ .+|..+..+++|++|++++|.+....|..+..+++|++|++++|.+..++. .+..+++|+.|++++|.+.+..|..
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 33 244445555555555555555555445555555555555555555555443 3455555555555555555555555
Q ss_pred ccCCC-CCCEEEeeCcCCC
Q 005207 302 INGLK-SLKTLNLSGCCKL 319 (709)
Q Consensus 302 ~~~l~-~L~~L~L~~~~~~ 319 (709)
+..++ +|++|++++|++.
T Consensus 243 ~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCCCTTCCEEECTTCCEE
T ss_pred HHhhhccCCEEEccCCCee
Confidence 55553 5555555555543
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=4.6e-26 Score=259.62 Aligned_cols=151 Identities=16% Similarity=0.091 Sum_probs=66.0
Q ss_pred CCCccEEEccCCCCC----CcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCC---CcCcccccCCc
Q 005207 163 VESLKILILSGCLKL----RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNL---SSLPVAISSFQ 235 (709)
Q Consensus 163 l~~L~~L~Ls~~~~~----~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l---~~lp~~l~~l~ 235 (709)
+++|++|++++|.+. ..++..+.++++|+.|+++++.+..+|..+..+++|+.|+++.+... ...+..+..++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 344555555554443 22333344455555555555555555555555555555555432211 11222344445
Q ss_pred cCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcc--cCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEe
Q 005207 236 CLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITE--VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNL 313 (709)
Q Consensus 236 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~--l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L 313 (709)
+|+.|+++++ ....+|..+..+++|++|++++|.+.. +...+..+++|+.|+++++.....++.....+++|++|++
T Consensus 271 ~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 271 KLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 5555555442 223334444445555555555554431 1122344555555555422211222222334455555555
Q ss_pred e
Q 005207 314 S 314 (709)
Q Consensus 314 ~ 314 (709)
+
T Consensus 350 ~ 350 (592)
T 3ogk_B 350 E 350 (592)
T ss_dssp E
T ss_pred e
Confidence 5
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=2.1e-26 Score=262.39 Aligned_cols=395 Identities=16% Similarity=0.144 Sum_probs=276.8
Q ss_pred ehhhhcCCCCcceEEecCccc-------cCc--------c----cccCcCccEEEeeCCCCCCCC-CcC-C-c-CCceEE
Q 005207 37 SAKAFSLMTNLGLLKINNVQL-------LEG--------L----EYLSNKLRLLDWHRYPLKSLP-SNL-Q-L-DKIVEF 93 (709)
Q Consensus 37 ~~~~f~~l~~L~~L~l~~~~l-------~~~--------~----~~l~~~L~~L~l~~~~l~~lp-~~~-~-l-~~L~~L 93 (709)
.+..+.++++|+.|+++++.. +.. + ..+ ++|++|++++|.++... ..+ . + .+|++|
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNL-RQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhC-CCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 457888999999999976331 101 1 133 58999999998765322 112 2 3 349999
Q ss_pred EcccCC-cc--ccccccccccCCcEEEcCCCCCCCCCC-----CCCCCCCccEEeccCCccccccC-cccccccccccCC
Q 005207 94 KMCYSR-IE--ELWKGIKHLNMLKVMKLSHSENLIKTP-----DFTEAPNLEELYLEGCTKLRKVH-PSLLLHNKLIFVE 164 (709)
Q Consensus 94 ~Ls~n~-i~--~l~~~~~~l~~L~~L~Ls~~~~~~~~~-----~~~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~l~ 164 (709)
+|+++. ++ .++.....+++|++|+|++|.+..... .+..+++|++|++++|. +..+. ..+. .-+..++
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~--~~~~~~~ 220 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLE--TIARNCR 220 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHH--HHHHHCT
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHH--HHHhhCC
Confidence 998876 22 233334578999999999997543321 23468899999998874 32111 1111 1123468
Q ss_pred CccEEEccCCCCCCcCCccccCCCccceeeccCCCcc----ccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEE
Q 005207 165 SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK----ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNL 240 (709)
Q Consensus 165 ~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~----~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 240 (709)
+|++|++++|.+.+ ++..+..+++|+.|+++..... ..+..+..+++|+.|+++++ ....+|..+..+++|++|
T Consensus 221 ~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 221 SLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp TCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEE
T ss_pred CCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEE
Confidence 89999999987665 6788889999999999864322 45567788899999999884 456677778889999999
Q ss_pred eeeCCCCCCcCc-hhhccCCCCCeeeccCccCc--ccCcccCCCCCCCEEeccC----------CCCCcc--ccccccCC
Q 005207 241 KLSGCSKLKKFP-QIVTTMEDLSELNLDGTSIT--EVPSSIELLPGLELLNLND----------CKNFAR--VPSSINGL 305 (709)
Q Consensus 241 ~Ls~~~~~~~~~-~~~~~l~~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~L~~----------~~~~~~--l~~~~~~l 305 (709)
++++|.+..... ..+..+++|++|++. +.+. .++.....+++|++|++++ |..... ++.....+
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 999998544332 456889999999998 4444 3444456788999999994 443332 23334568
Q ss_pred CCCCEEEeeCcCCCccCCccccC-CCccceeecc----ccccccCC------cccccccCCcEEEccCCCCCCCCCcccc
Q 005207 306 KSLKTLNLSGCCKLENVPDTLGQ-VESLEELDIS----ETAVRRPP------SSVFLMKNLRTLSFSGCNGPPSSASWHL 374 (709)
Q Consensus 306 ~~L~~L~L~~~~~~~~~~~~l~~-l~~L~~L~L~----~n~i~~l~------~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 374 (709)
++|++|+++.+...+..+..+.. +++|+.|+++ .+.++..| ..+..+++|++|+++.|......
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~----- 452 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD----- 452 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH-----
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH-----
Confidence 99999999777766655555554 8899999996 56677643 33566999999999876631000
Q ss_pred ccccccccCccccccccCCC-CCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc--ccChhhhcCCCcCe
Q 005207 375 HLPFNLMGKSSCLVALMLPS-LSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNLKE 451 (709)
Q Consensus 375 ~~~~~~~~~~~~~~~~~lp~-l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~ 451 (709)
..+.. ...+++|+.|+|++|++++..++..+..+++|+.|+|++|.++ .++..+..+++|+.
T Consensus 453 ---------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 453 ---------------LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp ---------------HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred ---------------HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence 00111 2347889999999999875556666788899999999999987 35656678999999
Q ss_pred ecccccc
Q 005207 452 LEMEDCK 458 (709)
Q Consensus 452 L~L~~c~ 458 (709)
|+|++|+
T Consensus 518 L~ls~n~ 524 (592)
T 3ogk_B 518 LWVQGYR 524 (592)
T ss_dssp EEEESCB
T ss_pred eECcCCc
Confidence 9999998
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=6.1e-24 Score=225.72 Aligned_cols=268 Identities=18% Similarity=0.174 Sum_probs=152.0
Q ss_pred ccEEEeeCCCCCCCCCcCCcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCc
Q 005207 68 LRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCT 145 (709)
Q Consensus 68 L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~ 145 (709)
....+.+++.++.+|..+. ++|++|++++|+|+.++. .+..+++|++|+|++|++....+ .|.++++|++|++++|
T Consensus 33 ~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n- 110 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN- 110 (353)
T ss_dssp TSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-
Confidence 3456777788888887553 478888888888887765 57778888888888887666544 3777777777777776
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCC-ccccCCCccceeeccCC-CccccC-cccccCCCCcEEecCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFP-HVVGSMECLQELLLDGT-DIKELP-LSIEHLFGLVQLTLNDCK 222 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~-~~l~~l~~L~~L~l~~~-~i~~lp-~~l~~l~~L~~L~L~~~~ 222 (709)
.+..++... +..+++|++|++++|.+....+ ..+..+++|++|++++| .+..++ ..+..+++|+.|++++|.
T Consensus 111 ~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 111 YLSNLSSSW-----FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CCSSCCHHH-----HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred cCCcCCHhH-----hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 344444321 1224455555555555443222 24555555555555555 244332 334445555555555544
Q ss_pred CCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccc
Q 005207 223 NLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSI 302 (709)
Q Consensus 223 ~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~ 302 (709)
.....|..+..+++|++|++++|.+....+..+..+++|+.|++++|.++.++ +..+
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-----------------------~~~l 242 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH-----------------------FSEL 242 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC-----------------------CC--
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc-----------------------cccc
Confidence 44444444444555555555554443222222333444555555544444332 2211
Q ss_pred ---cCCCCCCEEEeeCcCCCc----cCCccccCCCccceeeccccccccCCccc-ccccCCcEEEccCCCC
Q 005207 303 ---NGLKSLKTLNLSGCCKLE----NVPDTLGQVESLEELDISETAVRRPPSSV-FLMKNLRTLSFSGCNG 365 (709)
Q Consensus 303 ---~~l~~L~~L~L~~~~~~~----~~~~~l~~l~~L~~L~L~~n~i~~l~~~~-~~l~~L~~L~L~~~~~ 365 (709)
...+.++.++++++...+ .+|..+..+++|+.|++++|.++.+|..+ ..+++|++|++++|+.
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 224456666666655443 24555666777777777777777777664 5677777777777764
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=4.3e-24 Score=222.20 Aligned_cols=245 Identities=18% Similarity=0.227 Sum_probs=208.0
Q ss_pred ceEEecCccccCcccccCcCccEEEeeCCCCCCCCCcC--CcCCceEEEcccCCcccc---ccccccccCCcEEEcCCCC
Q 005207 48 GLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEEL---WKGIKHLNMLKVMKLSHSE 122 (709)
Q Consensus 48 ~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~i~~l---~~~~~~l~~L~~L~Ls~~~ 122 (709)
+.++++++.+...+..++.+|++|++++|.++.+|... .+++|++|+|++|+++.+ +..+..+++|++|+|++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 46777777777666667789999999999999999764 899999999999999865 4667789999999999998
Q ss_pred CCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccc
Q 005207 123 NLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKE 202 (709)
Q Consensus 123 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~ 202 (709)
+....+.+..+++|++|++++| .+..++. ...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHS-NLKQMSE----FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTS-EEESSTT----TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred cccChhhcCCCCCCCEEECCCC-ccccccc----chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 7766666889999999999997 4554443 1234457889999999999988889999999999999999999985
Q ss_pred --cCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCccc-CcccC
Q 005207 203 --LPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEV-PSSIE 279 (709)
Q Consensus 203 --lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~~~~ 279 (709)
+|..+..+++|+.|++++|......|..+..+++|++|++++|.+....+..+..+++|++|++++|.+... +..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 888999999999999999887776688899999999999999998887777889999999999999999864 55677
Q ss_pred CC-CCCCEEeccCCCCCcc
Q 005207 280 LL-PGLELLNLNDCKNFAR 297 (709)
Q Consensus 280 ~l-~~L~~L~L~~~~~~~~ 297 (709)
.+ ++|+.|++++|++...
T Consensus 245 ~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCTTCCEEECTTCCEECS
T ss_pred hhhccCCEEEccCCCeecc
Confidence 77 4999999999987543
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=7.1e-23 Score=224.25 Aligned_cols=244 Identities=20% Similarity=0.250 Sum_probs=199.5
Q ss_pred ccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccC
Q 005207 189 CLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 268 (709)
Q Consensus 189 ~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~ 268 (709)
..+.++..+..++.+|..+. .+++.|++++|......+..|.++++|++|+|++|.+....+..+.++++|++|+|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 35567777778888887664 6788888888776665667788889999999999888877778888899999999999
Q ss_pred ccCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCc-cccCCCccceeeccccccccCC
Q 005207 269 TSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD-TLGQVESLEELDISETAVRRPP 346 (709)
Q Consensus 269 ~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~n~i~~l~ 346 (709)
|.++.++. .+..+++|+.|++++|.+....+..+..+++|++|++++|...+.++. .+..+++|+.|++++|.++.+|
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 99988876 588899999999999888776667788899999999999777776654 6788999999999999999887
Q ss_pred cccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCC
Q 005207 347 SSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSL 426 (709)
Q Consensus 347 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 426 (709)
. +..+++|++|++++|..... ....+.++++|+.|+|++|++. +..+..+..+++|
T Consensus 202 ~-~~~l~~L~~L~Ls~N~l~~~----------------------~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 257 (440)
T 3zyj_A 202 N-LTPLIKLDELDLSGNHLSAI----------------------RPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSL 257 (440)
T ss_dssp C-CTTCSSCCEEECTTSCCCEE----------------------CTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTC
T ss_pred c-cCCCcccCEEECCCCccCcc----------------------ChhhhccCccCCEEECCCCcee-EEChhhhcCCCCC
Confidence 4 67789999999999874321 1223778899999999999985 5667788899999
Q ss_pred CEEEcCCCCCcccChh-hhcCCCcCeecccccc
Q 005207 427 NELYLSKNNFVTLPAS-INSLLNLKELEMEDCK 458 (709)
Q Consensus 427 ~~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 458 (709)
+.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 9999999999988764 5778999999999886
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=8.5e-23 Score=224.47 Aligned_cols=243 Identities=23% Similarity=0.251 Sum_probs=175.9
Q ss_pred cceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCc
Q 005207 190 LQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 269 (709)
Q Consensus 190 L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~ 269 (709)
...++.++..++.+|..+. ++++.|++++|......+..|.++++|++|++++|.+....+..+.++++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 3456666666666665543 46777777776655555666777777777777777777666677777777888888777
Q ss_pred cCcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCc-cccCCCccceeeccccccccCCc
Q 005207 270 SITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD-TLGQVESLEELDISETAVRRPPS 347 (709)
Q Consensus 270 ~i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~n~i~~l~~ 347 (709)
.++.++.. +..+++|++|++++|.+....+..+..+++|++|++++|..++.++. .+..+++|+.|++++|.++.+|
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 212 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP- 212 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-
Confidence 77776654 67777888888887776655556677788888888887766666554 5677788888888888888775
Q ss_pred ccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCC
Q 005207 348 SVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLN 427 (709)
Q Consensus 348 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 427 (709)
.+..+++|++|++++|...... ...+.++++|+.|+|++|++. +..+..+..+++|+
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~----------------------~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIR----------------------PGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLV 269 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEEC----------------------GGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTCC
T ss_pred cccccccccEEECcCCcCcccC----------------------cccccCccCCCEEEeCCCcCc-eECHHHhcCCCCCC
Confidence 3667788888888887633211 112667788888888888885 55677788888888
Q ss_pred EEEcCCCCCcccChh-hhcCCCcCeecccccc
Q 005207 428 ELYLSKNNFVTLPAS-INSLLNLKELEMEDCK 458 (709)
Q Consensus 428 ~L~L~~n~l~~lp~~-i~~l~~L~~L~L~~c~ 458 (709)
.|+|++|+++.+|.. +..+++|+.|+|++|+
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 888888888877754 5678888888888885
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=4.4e-22 Score=224.92 Aligned_cols=256 Identities=19% Similarity=0.175 Sum_probs=138.3
Q ss_pred CcceEEecCccccCcccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCC
Q 005207 46 NLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLI 125 (709)
Q Consensus 46 ~L~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~ 125 (709)
+++.|+++++.+..-...++++|++|++++|.++.+|. .+++|++|+|++|+|+.+|. .+++|++|+|++|.+..
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~ 115 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH 115 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCC
T ss_pred CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCC
Confidence 46666666666654444445566666666666666666 45666666666666666655 45666666666665444
Q ss_pred CCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCc
Q 005207 126 KTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL 205 (709)
Q Consensus 126 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~ 205 (709)
..+ .+++|+.|++++| .+..+|.. +++|++|++++|.+.+ +|. .+.+|+.|++++|.++.+|
T Consensus 116 l~~---~l~~L~~L~L~~N-~l~~lp~~---------l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~- 177 (622)
T 3g06_A 116 LPA---LPSGLCKLWIFGN-QLTSLPVL---------PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTSLP- 177 (622)
T ss_dssp CCC---CCTTCCEEECCSS-CCSCCCCC---------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC-
T ss_pred CCC---CCCCcCEEECCCC-CCCcCCCC---------CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCCCc-
Confidence 322 4456666666665 34444432 2445555555554432 222 1234555555555555544
Q ss_pred ccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCC
Q 005207 206 SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLE 285 (709)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~ 285 (709)
..+++|+.|+ +++|.+.. +|. .+++|+.|++++|.++.+|.. +++|+
T Consensus 178 --~~~~~L~~L~------------------------Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~ 224 (622)
T 3g06_A 178 --MLPSGLQELS------------------------VSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPAL---PSGLK 224 (622)
T ss_dssp --CCCTTCCEEE------------------------CCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCC---CTTCC
T ss_pred --ccCCCCcEEE------------------------CCCCCCCC-CCC---ccchhhEEECcCCcccccCCC---CCCCC
Confidence 2234444444 44444332 111 124455555555555555432 35555
Q ss_pred EEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCC
Q 005207 286 LLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 286 ~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~ 365 (709)
.|++++|.+.+ +| ..+++|++|++++|.+. .+|. .+++|+.|++++|.++.+|..+..+++|+.|++++|..
T Consensus 225 ~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 225 ELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp EEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred EEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 66665554433 33 23455666666665443 3333 34566666666666666666666666666666666653
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=4.4e-22 Score=224.89 Aligned_cols=236 Identities=22% Similarity=0.209 Sum_probs=172.2
Q ss_pred cCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCc
Q 005207 66 NKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 145 (709)
.+++.|+++++.++.+|..+. ++|++|+|++|+|+.+|. .+++|++|+|++|++... |. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-p~--~l~~L~~L~Ls~N- 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSL-PV--LPPGLLELSIFSN- 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCC-CC--CCTTCCEEEECSC-
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcC-CC--CCCCCCEEECcCC-
Confidence 468888888888888887665 788888888888888876 567788888888875433 32 5667777777765
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS 225 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~ 225 (709)
.+..+|. .+++|+.|++++|.++.+|.. +++|++|++++|.. .
T Consensus 112 ~l~~l~~---------------------------------~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l-~ 154 (622)
T 3g06_A 112 PLTHLPA---------------------------------LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-A 154 (622)
T ss_dssp CCCCCCC---------------------------------CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-S
T ss_pred cCCCCCC---------------------------------CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcC-C
Confidence 3443332 234455555555555555543 25666666666533 3
Q ss_pred cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCC
Q 005207 226 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGL 305 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l 305 (709)
.+|. .+++|+.|++++|.+.. +| ..+++|+.|++++|.++.+|.. +++|+.|++++|.+. .+|. .+
T Consensus 155 ~l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~---~~ 220 (622)
T 3g06_A 155 SLPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA---LP 220 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCC---CC
T ss_pred CcCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCC---CC
Confidence 3443 24577788888776655 33 4568899999999999998864 589999999999765 4454 35
Q ss_pred CCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCC
Q 005207 306 KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPP 367 (709)
Q Consensus 306 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~ 367 (709)
++|++|++++|.+.+ +| ..+++|+.|++++|.++.+|. .+++|+.|++++|....
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~ 275 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTR 275 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCS
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCc
Confidence 899999999997655 55 456899999999999999987 67999999999998663
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=4.1e-23 Score=212.42 Aligned_cols=265 Identities=20% Similarity=0.209 Sum_probs=161.1
Q ss_pred cEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccc-cccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCcc
Q 005207 69 RLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTK 146 (709)
Q Consensus 69 ~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~ 146 (709)
+.++.+++.++.+|..+ +++|++|++++|+|+.++ ..+..+++|++|+|++|.+....+ .+..+++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 45566666666666543 356666666666666655 346666666666666666555433 466666666666666643
Q ss_pred ccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcc-cccCCCCcEEecCCCCCCC
Q 005207 147 LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLS 225 (709)
Q Consensus 147 l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~~l~ 225 (709)
+..+++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..++.. +..+++|+.|++++|....
T Consensus 93 l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 93 LRSVDPA-----TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CCCCCTT-----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred ccccCHH-----HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 4444321 122355666677777766666666677777777777777777766643 6667777777777765443
Q ss_pred cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCccccccccC
Q 005207 226 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSING 304 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~ 304 (709)
..+..+.++++|++|++++|.+....|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|++....+.. .-
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~ 246 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PL 246 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HH
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HH
Confidence 333346777777777777777777777777777778888888887777664 3677778888888877654332210 00
Q ss_pred CCCCCEEEeeCcCCCccCCccccC--CCccceeecccc
Q 005207 305 LKSLKTLNLSGCCKLENVPDTLGQ--VESLEELDISET 340 (709)
Q Consensus 305 l~~L~~L~L~~~~~~~~~~~~l~~--l~~L~~L~L~~n 340 (709)
...++.+....+......|..+.. +..++..++.+|
T Consensus 247 ~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 247 WAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 112233334444444455554432 344555555544
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=2.8e-24 Score=224.71 Aligned_cols=242 Identities=18% Similarity=0.112 Sum_probs=154.2
Q ss_pred CCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeee
Q 005207 164 ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLS 243 (709)
Q Consensus 164 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls 243 (709)
++|++|++++|.+.+..|..+..+++|++|++++|.+..++. + ..+++|++|+++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~------------------------~~l~~L~~L~Ls 88 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L------------------------ESLSTLRTLDLN 88 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-E------------------------TTCTTCCEEECC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-h------------------------hhcCCCCEEECc
Confidence 345555555555544444445555555555555555543332 4 444555555555
Q ss_pred CCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCC
Q 005207 244 GCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP 323 (709)
Q Consensus 244 ~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~ 323 (709)
+|.+... ...++|++|++++|.+..++. ..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 5443221 122556666666666665443 235666666666666666555566666777777777766665544
Q ss_pred ccc-cCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCC
Q 005207 324 DTL-GQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLT 402 (709)
Q Consensus 324 ~~l-~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~ 402 (709)
..+ ..+++|++|++++|.++.++... .+++|++|++++|..... .+.+..+++|+
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~l-----------------------~~~~~~l~~L~ 217 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFM-----------------------GPEFQSAAGVT 217 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEE-----------------------CGGGGGGTTCS
T ss_pred HHHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCcc-----------------------hhhhcccCccc
Confidence 444 35677777777777777664333 377777777777763211 12255677888
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc--ccChhhhcCCCcCeeccccccccccC
Q 005207 403 KLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNLKELEMEDCKRLQFL 463 (709)
Q Consensus 403 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~~l 463 (709)
.|++++|++. .+|..+..+++|+.|++++|++. .+|..+..+++|+.|++.+|+.++..
T Consensus 218 ~L~L~~N~l~--~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 218 WISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp EEECTTSCCC--EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred EEECcCCccc--chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 8888888885 47888899999999999999998 77888899999999999988877653
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=6.9e-23 Score=210.74 Aligned_cols=220 Identities=20% Similarity=0.146 Sum_probs=115.8
Q ss_pred eEEEcccCCccccccccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCcccccc-CcccccccccccCCCccE
Q 005207 91 VEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKV-HPSLLLHNKLIFVESLKI 168 (709)
Q Consensus 91 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~-~~~i~~l~~L~~l~~L~~ 168 (709)
++++.+++.++.+|.++ .++|+.|++++|.+....+ .|..+++|++|++++| .+..+ +..+ ..+++|++
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~------~~l~~L~~ 84 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAF------TGLALLEQ 84 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTT------TTCTTCCE
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhc------CCccCCCE
Confidence 45555555555555433 3455566666555544443 3555556666666554 23333 2222 22455555
Q ss_pred EEccCCC-CCCcCCccccCCCccceeeccCCCcccc-CcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCC
Q 005207 169 LILSGCL-KLRKFPHVVGSMECLQELLLDGTDIKEL-PLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCS 246 (709)
Q Consensus 169 L~Ls~~~-~~~~~~~~l~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~ 246 (709)
|++++|. +....+..+..+++|++|++++|.+..+ |..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 6665554 3333345555555666666666555544 3345555556666665554433333335555556666665555
Q ss_pred CCCcCchhhccCCCCCeeeccCccCccc-CcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCC
Q 005207 247 KLKKFPQIVTTMEDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKL 319 (709)
Q Consensus 247 ~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~ 319 (709)
+....+..+..+++|++|++++|.+..+ |..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+..
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 5544444455555566666666555544 444555555666666655555444444555555666666555543
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=4.4e-22 Score=218.79 Aligned_cols=241 Identities=21% Similarity=0.250 Sum_probs=128.2
Q ss_pred cEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccc-cccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCcc
Q 005207 69 RLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTK 146 (709)
Q Consensus 69 ~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~ 146 (709)
+.++.++..++.+|..+. ++|++|+|++|+|+.++ ..+..+++|+.|+|++|++....+ .|.++++|
T Consensus 57 ~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L---------- 125 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL---------- 125 (452)
T ss_dssp CEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC----------
T ss_pred cEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccC----------
Confidence 444445555555554332 34555555555555442 334444444444444444333322 23344444
Q ss_pred ccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCc-ccccCCCCcEEecCCCCCCC
Q 005207 147 LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLS 225 (709)
Q Consensus 147 l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~ 225 (709)
++|+|++|.+....+..+..+++|++|++++|.+..+|. .+..+++|+.|++++|+.++
T Consensus 126 --------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~ 185 (452)
T 3zyi_A 126 --------------------NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185 (452)
T ss_dssp --------------------CEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC
T ss_pred --------------------CEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc
Confidence 444444444443344455566666666666666665554 34455555555555544444
Q ss_pred cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCC
Q 005207 226 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGL 305 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l 305 (709)
.++. ..+.++++|++|++++|.+..+| .+..+++|+.|++++|.+.+..|..+.++
T Consensus 186 ~i~~-----------------------~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 241 (452)
T 3zyi_A 186 YISE-----------------------GAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGL 241 (452)
T ss_dssp EECT-----------------------TTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred ccCh-----------------------hhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCc
Confidence 4433 12344444555555555555443 24555666666666666555556666666
Q ss_pred CCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcc-cccccCCcEEEccCCC
Q 005207 306 KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS-VFLMKNLRTLSFSGCN 364 (709)
Q Consensus 306 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~~~ 364 (709)
++|++|++++|.+....+..+..+++|+.|++++|.++.++.. +..+++|+.|++++|.
T Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 6666666666666655566666666666666666666655543 3446667777776665
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=6.5e-22 Score=216.61 Aligned_cols=243 Identities=20% Similarity=0.226 Sum_probs=128.7
Q ss_pred eEEEcccCCccccccccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCccEE
Q 005207 91 VEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKIL 169 (709)
Q Consensus 91 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L 169 (709)
..++.++.+++.+|.++. ++++.|+|++|++....+ .|.++++|++|+|++| .+..+++. .+..+++|++|
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~-----~~~~l~~L~~L 117 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIG-----AFNGLANLNTL 117 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGG-----GGTTCSSCCEE
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChh-----hccCCccCCEE
Confidence 344444444444444332 344444444444433332 3444555555555544 22222211 11123444444
Q ss_pred EccCCCCCCcCCccccCCCccceeeccCCCccccCc-ccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCC
Q 005207 170 ILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKL 248 (709)
Q Consensus 170 ~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~ 248 (709)
++++|.+....+..+..+++|++|++++|.+..++. .+..+++|+.|++++|+.+..++.
T Consensus 118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~------------------- 178 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE------------------- 178 (440)
T ss_dssp ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-------------------
T ss_pred ECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc-------------------
Confidence 554444444444455666666666666666665543 344555555555555444443332
Q ss_pred CcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccC
Q 005207 249 KKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQ 328 (709)
Q Consensus 249 ~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~ 328 (709)
..+.++++|++|++++|.++.+|. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+....+..+..
T Consensus 179 ----~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 179 ----GAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp ----TTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred ----chhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 234445555555555555555543 455666666666666665555666666666666666666666666666666
Q ss_pred CCccceeeccccccccCCcc-cccccCCcEEEccCCCC
Q 005207 329 VESLEELDISETAVRRPPSS-VFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 329 l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~~~~ 365 (709)
+++|+.|+|++|.++.++.. +..+++|+.|++++|..
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 66677777777666665544 34466777777776663
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=2e-25 Score=254.37 Aligned_cols=227 Identities=15% Similarity=0.099 Sum_probs=118.3
Q ss_pred ehhhhcCCCCcceEEecCccccCcc-------------------cccCcCccEEEeeCCCCCCCC-CcC--CcCCceEEE
Q 005207 37 SAKAFSLMTNLGLLKINNVQLLEGL-------------------EYLSNKLRLLDWHRYPLKSLP-SNL--QLDKIVEFK 94 (709)
Q Consensus 37 ~~~~f~~l~~L~~L~l~~~~l~~~~-------------------~~l~~~L~~L~l~~~~l~~lp-~~~--~l~~L~~L~ 94 (709)
....+.++++|+.|+++++.....+ ... ++|++|+++++.++... ..+ .+++|++|+
T Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~ 136 (594)
T 2p1m_B 58 PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSY-TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhC-CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEe
Confidence 3467888899999999886522211 122 36777777777654321 111 456777777
Q ss_pred cccC-Cccc--cccccccccCCcEEEcCCCCCCCCC----CC-CCCCCCccEEeccCCccccccCcccccccc-cccCCC
Q 005207 95 MCYS-RIEE--LWKGIKHLNMLKVMKLSHSENLIKT----PD-FTEAPNLEELYLEGCTKLRKVHPSLLLHNK-LIFVES 165 (709)
Q Consensus 95 Ls~n-~i~~--l~~~~~~l~~L~~L~Ls~~~~~~~~----~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~-L~~l~~ 165 (709)
|+++ .++. ++.....+++|++|+|++|.+.... +. ...+++|++|++++|. ..+.. ..+.. ...+++
T Consensus 137 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~--~~l~~l~~~~~~ 212 (594)
T 2p1m_B 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSF--SALERLVTRCPN 212 (594)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCH--HHHHHHHHHCTT
T ss_pred CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCH--HHHHHHHHhCCC
Confidence 7766 4443 4344456777777777777643221 11 2356677777777663 11110 00011 112466
Q ss_pred ccEEEccCCCCCCcCCccccCCCccceeeccCCC-------ccccCcccccCCCCcEE-ecCCCCCCCcCcccccCCccC
Q 005207 166 LKILILSGCLKLRKFPHVVGSMECLQELLLDGTD-------IKELPLSIEHLFGLVQL-TLNDCKNLSSLPVAISSFQCL 237 (709)
Q Consensus 166 L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~-------i~~lp~~l~~l~~L~~L-~L~~~~~l~~lp~~l~~l~~L 237 (709)
|++|++++|...+.++..+..+++|+.|+++.+. +..++..+.++++|+.| .+.+. ....++..+..+++|
T Consensus 213 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L 291 (594)
T 2p1m_B 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRL 291 (594)
T ss_dssp CCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTC
T ss_pred CcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCCC
Confidence 6667776664444455566666666666644332 23444455566666665 23221 112233333345556
Q ss_pred cEEeeeCCCCCCc-CchhhccCCCCCeeeccCc
Q 005207 238 RNLKLSGCSKLKK-FPQIVTTMEDLSELNLDGT 269 (709)
Q Consensus 238 ~~L~Ls~~~~~~~-~~~~~~~l~~L~~L~L~~~ 269 (709)
++|++++|.+... ....+..+++|++|++.+|
T Consensus 292 ~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 292 TTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred CEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 6666665553221 1222345555555555555
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=5.8e-24 Score=221.76 Aligned_cols=200 Identities=23% Similarity=0.275 Sum_probs=126.6
Q ss_pred CCccCcEEeeeCCCCCCcCchhh--ccCCCCCeeeccCccCcccCcccCCC-----CCCCEEeccCCCCCccccccccCC
Q 005207 233 SFQCLRNLKLSGCSKLKKFPQIV--TTMEDLSELNLDGTSITEVPSSIELL-----PGLELLNLNDCKNFARVPSSINGL 305 (709)
Q Consensus 233 ~l~~L~~L~Ls~~~~~~~~~~~~--~~l~~L~~L~L~~~~i~~l~~~~~~l-----~~L~~L~L~~~~~~~~l~~~~~~l 305 (709)
++++|++|++++|.+.+..|..+ ..+++|++|++++|.++.+|..++.+ ++|++|++++|.+.+..|..+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 34555555555555554444433 45555555555555555544444333 566666666666555555556666
Q ss_pred CCCCEEEeeCcCCCcc--CCccc--cCCCccceeeccccccccCCc---c-cccccCCcEEEccCCCCCCCCCccccccc
Q 005207 306 KSLKTLNLSGCCKLEN--VPDTL--GQVESLEELDISETAVRRPPS---S-VFLMKNLRTLSFSGCNGPPSSASWHLHLP 377 (709)
Q Consensus 306 ~~L~~L~L~~~~~~~~--~~~~l--~~l~~L~~L~L~~n~i~~l~~---~-~~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 377 (709)
++|++|++++|...+. ++..+ +.+++|++|++++|.++.++. . +..+++|++|++++|......
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------- 244 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA-------- 244 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC--------
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc--------
Confidence 6666666666665443 22222 566777777777777764332 2 234677888888877643221
Q ss_pred cccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccc
Q 005207 378 FNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDC 457 (709)
Q Consensus 378 ~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 457 (709)
..+.+..+++|+.|+|++|+++ .+|..+. ++|+.|+|++|+++.+|. +..+++|+.|++++|
T Consensus 245 -------------~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 245 -------------GAPSCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp -------------CCSCCCCCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC
T ss_pred -------------chhhhhhcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCC
Confidence 0122556788999999999885 5777666 889999999999998876 888999999999988
Q ss_pred c
Q 005207 458 K 458 (709)
Q Consensus 458 ~ 458 (709)
+
T Consensus 307 ~ 307 (312)
T 1wwl_A 307 P 307 (312)
T ss_dssp T
T ss_pred C
Confidence 5
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=7.5e-24 Score=221.42 Aligned_cols=253 Identities=15% Similarity=0.162 Sum_probs=116.9
Q ss_pred cceEEecCccccCccc---ccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCccccccccccccCCcEEEcCCC
Q 005207 47 LGLLKINNVQLLEGLE---YLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHS 121 (709)
Q Consensus 47 L~~L~l~~~~l~~~~~---~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~ 121 (709)
++.++++.+.+...+. ..+++|++|++++|.++.++. .+ .+++|++|+|++|+++.++. +..+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 4444555555443221 112356666666666655553 22 55556666666665554443 555555555555555
Q ss_pred CCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCcc
Q 005207 122 ENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIK 201 (709)
Q Consensus 122 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~ 201 (709)
++.... ..++|++|++++| .+..++.. .+++|++|++++|.+.+..+..++.+++|++|++++|.+.
T Consensus 91 ~l~~l~----~~~~L~~L~l~~n-~l~~~~~~--------~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 91 YVQELL----VGPSIETLHAANN-NISRVSCS--------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp EEEEEE----ECTTCCEEECCSS-CCSEEEEC--------CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred cccccc----CCCCcCEEECCCC-ccCCcCcc--------ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 433211 2245555555554 22222211 1233444444444444444444444444444444444444
Q ss_pred ccCcccccCCCCcEEecCCCCCCCcCcccc-cCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCC
Q 005207 202 ELPLSIEHLFGLVQLTLNDCKNLSSLPVAI-SSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIEL 280 (709)
Q Consensus 202 ~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~ 280 (709)
.+ .+..+ ..+++|++|++++|.+... + ....+++|++|++++|.++.+|..+..
T Consensus 158 ~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 212 (317)
T 3o53_A 158 TV-----------------------NFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQS 212 (317)
T ss_dssp EE-----------------------EGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGG
T ss_pred cc-----------------------cHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhhhcc
Confidence 32 22222 2334444444444443322 1 111244455555555555555444555
Q ss_pred CCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCC-ccCCccccCCCccceeeccc
Q 005207 281 LPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKL-ENVPDTLGQVESLEELDISE 339 (709)
Q Consensus 281 l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~L~~ 339 (709)
+++|+.|++++|.+. .+|..+..+++|+.|++++|... +.++..+..+++|+.|++.+
T Consensus 213 l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 213 AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp GTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 555555555555433 34444455555555555555554 34444455555555555553
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=1.9e-24 Score=246.35 Aligned_cols=268 Identities=17% Similarity=0.124 Sum_probs=183.1
Q ss_pred hhcCCCCcceEEecCccccCc----cc-ccCcCccEEEeeCC-CCCC--CCCcC-CcCCceEEEcccCCccc-----ccc
Q 005207 40 AFSLMTNLGLLKINNVQLLEG----LE-YLSNKLRLLDWHRY-PLKS--LPSNL-QLDKIVEFKMCYSRIEE-----LWK 105 (709)
Q Consensus 40 ~f~~l~~L~~L~l~~~~l~~~----~~-~l~~~L~~L~l~~~-~l~~--lp~~~-~l~~L~~L~Ls~n~i~~-----l~~ 105 (709)
.+..+++|+.|+++++.+.+. +. .+ ++|++|++++| .++. ++... .+++|++|+|++|.++. ++.
T Consensus 100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred HHHhCCCCCeEEeeCcEEcHHHHHHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 356789999999999987642 22 34 59999999998 4543 44444 78999999999998764 333
Q ss_pred ccccccCCcEEEcCCCCCCCCC---CC-CCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCC-----
Q 005207 106 GIKHLNMLKVMKLSHSENLIKT---PD-FTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLK----- 176 (709)
Q Consensus 106 ~~~~l~~L~~L~Ls~~~~~~~~---~~-~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~----- 176 (709)
....+++|+.|++++|...... +. +..+++|++|++++|..+..++..+.. +++|+.|+++.+..
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~------~~~L~~L~l~~~~~~~~~~ 252 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR------APQLEELGTGGYTAEVRPD 252 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH------CTTCSEEECSBCCCCCCHH
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc------CCcceEcccccccCccchh
Confidence 4457889999999999611111 11 345799999999999666665544443 67899999877643
Q ss_pred -CCcCCccccCCCcccee-eccCCCccccCcccccCCCCcEEecCCCCCCCc-CcccccCCccCcEEeeeCCCCCCcCch
Q 005207 177 -LRKFPHVVGSMECLQEL-LLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS-LPVAISSFQCLRNLKLSGCSKLKKFPQ 253 (709)
Q Consensus 177 -~~~~~~~l~~l~~L~~L-~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~-lp~~l~~l~~L~~L~Ls~~~~~~~~~~ 253 (709)
...++..+.++++|+.| .+.......++..+..+++|++|++++|..... ++..+..+++|++|++++|......+.
T Consensus 253 ~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~ 332 (594)
T 2p1m_B 253 VYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332 (594)
T ss_dssp HHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH
T ss_pred hHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH
Confidence 12344567889999999 566655567777778899999999999883322 233356789999999999822222334
Q ss_pred hhccCCCCCeeeccC---------ccCcc--cCcccCCCCCCCEEeccCCCCCcccccccc-CCCCCCEEEee
Q 005207 254 IVTTMEDLSELNLDG---------TSITE--VPSSIELLPGLELLNLNDCKNFARVPSSIN-GLKSLKTLNLS 314 (709)
Q Consensus 254 ~~~~l~~L~~L~L~~---------~~i~~--l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~-~l~~L~~L~L~ 314 (709)
....+++|++|++.+ +.++. +......+++|+.|.+..+.+.......+. .+++|+.|+++
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 445688999998844 33331 111123467777776666555544333333 46777777777
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=6.9e-23 Score=213.59 Aligned_cols=250 Identities=20% Similarity=0.176 Sum_probs=184.9
Q ss_pred ccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCcccc--ccCcccc-cccccccCCCccEEEccCCCCCCcCCccc
Q 005207 108 KHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLR--KVHPSLL-LHNKLIFVESLKILILSGCLKLRKFPHVV 184 (709)
Q Consensus 108 ~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~--~~~~~i~-~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l 184 (709)
+..++|+.|++++|.+ ..++.+... |+.|++++|. +. .++..+. ..-....+++|++|++++|.+.+.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLT-VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH--Hhhccccccc-ccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4455666666666665 222222222 6666666653 22 2232221 00011136778888888888888788765
Q ss_pred --cCCCccceeeccCCCccccCcccccC-----CCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCc--Cchhh
Q 005207 185 --GSMECLQELLLDGTDIKELPLSIEHL-----FGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKK--FPQIV 255 (709)
Q Consensus 185 --~~l~~L~~L~l~~~~i~~lp~~l~~l-----~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~--~~~~~ 255 (709)
+.+++|++|++++|.++.+|..+..+ ++|++|++++|......|..++++++|++|++++|.+.+. .+..+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 88899999999999988888777777 8999999999887766667888899999999999887654 23333
Q ss_pred --ccCCCCCeeeccCccCcccCc----ccCCCCCCCEEeccCCCCCcccc-ccccCCCCCCEEEeeCcCCCccCCccccC
Q 005207 256 --TTMEDLSELNLDGTSITEVPS----SIELLPGLELLNLNDCKNFARVP-SSINGLKSLKTLNLSGCCKLENVPDTLGQ 328 (709)
Q Consensus 256 --~~l~~L~~L~L~~~~i~~l~~----~~~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~l~~ 328 (709)
..+++|++|++++|.++.++. .+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+. .+|..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 788999999999999885432 24577899999999998877664 44566899999999998876 6777666
Q ss_pred CCccceeeccccccccCCcccccccCCcEEEccCCCC
Q 005207 329 VESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 329 l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~ 365 (709)
++|+.|++++|.++.+|. +..+++|++|++++|+.
T Consensus 274 -~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp -SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred -CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence 899999999999998877 88899999999999974
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=4.1e-22 Score=220.49 Aligned_cols=239 Identities=19% Similarity=0.130 Sum_probs=151.0
Q ss_pred CCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeee
Q 005207 164 ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLS 243 (709)
Q Consensus 164 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls 243 (709)
++|++|++++|.+.+..|..++.+++|++|++++|.+..+++ +..+++|+.|++++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N---------------------- 90 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN---------------------- 90 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS----------------------
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC----------------------
Confidence 456666666666666555666666666666666666654443 555555555555554
Q ss_pred CCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCC
Q 005207 244 GCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP 323 (709)
Q Consensus 244 ~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~ 323 (709)
.+.... ..++|++|++++|.+..++. ..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|
T Consensus 91 --~l~~l~-----~~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 91 --YVQELL-----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp --EEEEEE-----ECTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred --cCCCCC-----CCCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 322111 12455555555555554443 234566666666666665555566666666666666666665555
Q ss_pred cccc-CCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCC
Q 005207 324 DTLG-QVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLT 402 (709)
Q Consensus 324 ~~l~-~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~ 402 (709)
..+. .+++|+.|++++|.++.++... .+++|++|++++|.... ..|.+..+++|+
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~l~~L~ 217 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAF-----------------------MGPEFQSAAGVT 217 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCE-----------------------ECGGGGGGTTCS
T ss_pred HHHhhhCCcccEEecCCCccccccccc-cCCCCCEEECCCCCCCC-----------------------CCHhHcCCCCcc
Confidence 5544 5666666666666666554332 46677777777766321 112255667888
Q ss_pred EEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCc--ccChhhhcCCCcCeecccccccc
Q 005207 403 KLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFV--TLPASINSLLNLKELEMEDCKRL 460 (709)
Q Consensus 403 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L 460 (709)
.|+|++|.+. .+|..+..+++|+.|++++|.+. .+|..+..++.|+.|++..+..+
T Consensus 218 ~L~Ls~N~l~--~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 218 WISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (487)
T ss_dssp EEECTTSCCC--EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred EEEecCCcCc--ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccc
Confidence 8888888885 47888889999999999999998 77888888999999988755443
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=3.5e-21 Score=213.05 Aligned_cols=224 Identities=16% Similarity=0.140 Sum_probs=178.2
Q ss_pred ccCcccccC----CCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcc
Q 005207 202 ELPLSIEHL----FGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS 277 (709)
Q Consensus 202 ~lp~~l~~l----~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~ 277 (709)
.+|..+..+ ++|+.|++++|......|..+..+++|++|+|++|.+.+..| +..+++|++|+|++|.++.++..
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~ 98 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG 98 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC
Confidence 344444443 378888888877666666778888899999998888776555 78889999999999999877643
Q ss_pred cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccccccc-CCcccc-cccCC
Q 005207 278 IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR-PPSSVF-LMKNL 355 (709)
Q Consensus 278 ~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-l~~~~~-~l~~L 355 (709)
++|+.|++++|.+.+..+. .+++|++|++++|.+.+..|..++.+++|+.|++++|.++. .|..+. .+++|
T Consensus 99 ----~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 99 ----PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp ----TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred ----CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 8999999999988776554 46789999999999888888888889999999999999986 455554 68999
Q ss_pred cEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCC
Q 005207 356 RTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNN 435 (709)
Q Consensus 356 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 435 (709)
++|++++|.... +|....+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+
T Consensus 172 ~~L~Ls~N~l~~------------------------~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 172 EHLNLQYNFIYD------------------------VKGQVVFAKLKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp CEEECTTSCCCE------------------------EECCCCCTTCCEEECCSSCCC--EECGGGGGGTTCSEEECTTSC
T ss_pred cEEecCCCcccc------------------------ccccccCCCCCEEECCCCCCC--CCCHhHcCCCCccEEEecCCc
Confidence 999999987321 123446788999999999985 366668888999999999999
Q ss_pred CcccChhhhcCCCcCeecccccccc
Q 005207 436 FVTLPASINSLLNLKELEMEDCKRL 460 (709)
Q Consensus 436 l~~lp~~i~~l~~L~~L~L~~c~~L 460 (709)
++.+|..+..+++|+.|++++|+..
T Consensus 226 l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 226 LVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CcccchhhccCCCCCEEEcCCCCCc
Confidence 9988888888888999999888643
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=1e-19 Score=186.05 Aligned_cols=220 Identities=18% Similarity=0.183 Sum_probs=129.5
Q ss_pred EEEeeCCCCCCCCCcCCcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccc
Q 005207 70 LLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKL 147 (709)
Q Consensus 70 ~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l 147 (709)
..+..+..+..+|..+. ++|++|++++|+++.++. .+..+++|++|++++|++....+ .|.++++|++|++++|. +
T Consensus 11 ~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-I 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-C
T ss_pred eEEecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-c
Confidence 34555666777777553 578888888888887764 67777788888888777655544 46667777777777652 3
Q ss_pred cccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCc-ccccCCCCcEEecCCCCCCC-
Q 005207 148 RKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPL-SIEHLFGLVQLTLNDCKNLS- 225 (709)
Q Consensus 148 ~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~- 225 (709)
..++ +..+..+++|++|++++|.+..++. .+..+++|++|++++|....
T Consensus 89 ~~~~-----------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 139 (276)
T 2z62_A 89 QSLA-----------------------------LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139 (276)
T ss_dssp CEEC-----------------------------TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred CccC-----------------------------hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee
Confidence 3332 3333444444444444444443333 34444444444444443332
Q ss_pred cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCC----eeeccCccCcccCcccCCCCCCCEEeccCCCCCcccccc
Q 005207 226 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLS----ELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSS 301 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~----~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~ 301 (709)
.+|..+.++++|++|++++|.+....+..+..+++|+ .|++++|.+..++.......+|+.|++++|.+.+..+..
T Consensus 140 ~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 219 (276)
T 2z62_A 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGI 219 (276)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTT
T ss_pred cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhH
Confidence 2344455555556666655555554444454444444 677777777766665555556777777777655444444
Q ss_pred ccCCCCCCEEEeeCcCCCc
Q 005207 302 INGLKSLKTLNLSGCCKLE 320 (709)
Q Consensus 302 ~~~l~~L~~L~L~~~~~~~ 320 (709)
+..+++|++|++++|+...
T Consensus 220 ~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 220 FDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TTTCCSCCEEECCSSCBCC
T ss_pred hcccccccEEEccCCcccc
Confidence 5666677777777666543
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=1.4e-19 Score=186.18 Aligned_cols=201 Identities=20% Similarity=0.215 Sum_probs=106.1
Q ss_pred ccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCe
Q 005207 184 VGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSE 263 (709)
Q Consensus 184 l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~ 263 (709)
++++++++.+++++++++.+|..+. ++++.|++++|......+..+.++++|++|++++|.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~----------------- 66 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE----------------- 66 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-----------------
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-----------------
Confidence 3445556666666666666554442 345555555544433333444445555555555444
Q ss_pred eeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc
Q 005207 264 LNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 343 (709)
Q Consensus 264 L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 343 (709)
++.++.. +.+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 67 -------l~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 67 -------LTKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp -------CCEEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred -------cCcccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 4433332 34444444444444432 33444445555555555555555444455666666666666666666
Q ss_pred cCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCC
Q 005207 344 RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNL 423 (709)
Q Consensus 344 ~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 423 (709)
.+|... +..+++|+.|+|++|++. ...+..+..+
T Consensus 138 ~~~~~~---------------------------------------------~~~l~~L~~L~L~~N~l~-~l~~~~~~~l 171 (290)
T 1p9a_G 138 TLPPGL---------------------------------------------LTPTPKLEKLSLANNNLT-ELPAGLLNGL 171 (290)
T ss_dssp CCCTTT---------------------------------------------TTTCTTCCEEECTTSCCS-CCCTTTTTTC
T ss_pred ccChhh---------------------------------------------cccccCCCEEECCCCcCC-ccCHHHhcCc
Confidence 554332 233444555555555553 2222334556
Q ss_pred CCCCEEEcCCCCCcccChhhhcCCCcCeecccccc
Q 005207 424 HSLNELYLSKNNFVTLPASINSLLNLKELEMEDCK 458 (709)
Q Consensus 424 ~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 458 (709)
++|+.|+|++|+++.+|..+..+++|+.|++++|+
T Consensus 172 ~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 66666666666666666666666666666666665
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=2.5e-19 Score=184.30 Aligned_cols=196 Identities=23% Similarity=0.258 Sum_probs=148.1
Q ss_pred ccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccC-cccCCCCCCCEEeccCCCCCccccccccCCCCCC
Q 005207 231 ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP-SSIELLPGLELLNLNDCKNFARVPSSINGLKSLK 309 (709)
Q Consensus 231 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~ 309 (709)
+.+++++++++++++.+.. +|..+ .++++.|++++|.+..++ ..+..+++|+.|++++|.+.+..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 4456666777776655443 33322 257888888888888664 5688999999999999987654332 7899999
Q ss_pred EEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCcccccc
Q 005207 310 TLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVA 389 (709)
Q Consensus 310 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (709)
+|++++|.+. .+|..+..+++|+.|++++|.++.++...
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~---------------------------------------- 119 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA---------------------------------------- 119 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSST----------------------------------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHH----------------------------------------
Confidence 9999998765 67888899999999999999998776321
Q ss_pred ccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhh-hcCCCcCeeccccccccccCCCC--
Q 005207 390 LMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASI-NSLLNLKELEMEDCKRLQFLPQL-- 466 (709)
Q Consensus 390 ~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i-~~l~~L~~L~L~~c~~L~~lp~l-- 466 (709)
+.++++|+.|+|++|++. ...+..+..+++|+.|+|++|+++.+|..+ ..+++|+.|++++|+ ++.+|.-
T Consensus 120 -----~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~ 192 (290)
T 1p9a_G 120 -----LRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFF 192 (290)
T ss_dssp -----TTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred -----HcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCccChhhc
Confidence 456677788888888775 445566789999999999999999999764 789999999999995 5666642
Q ss_pred -CCCccEEEecCCC
Q 005207 467 -PPNIIFVKVNGCS 479 (709)
Q Consensus 467 -p~sL~~L~i~~C~ 479 (709)
.++|+.|++.+.|
T Consensus 193 ~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 193 GSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCCCSEEECCSCC
T ss_pred ccccCCeEEeCCCC
Confidence 1345556555443
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=2.7e-19 Score=182.93 Aligned_cols=219 Identities=19% Similarity=0.206 Sum_probs=145.0
Q ss_pred eEEecCccccCcccccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCC
Q 005207 49 LLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLI 125 (709)
Q Consensus 49 ~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~ 125 (709)
..+..+..+...+..+|.+|++|++++|.++.++. .+ .+++|++|++++|+++.++. .+..+++|++|+|++|++..
T Consensus 11 ~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred eEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 45556666665566677899999999999999986 44 89999999999999998874 68999999999999999877
Q ss_pred CCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCC-cCCccccCCCccceeeccCCCcccc
Q 005207 126 KTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLR-KFPHVVGSMECLQELLLDGTDIKEL 203 (709)
Q Consensus 126 ~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~-~~~~~l~~l~~L~~L~l~~~~i~~l 203 (709)
..+ .+.++++|++|++++| .+..++.. .+..+++|++|++++|.+.+ .+|..++.+++|++|++++|.++.+
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVET-NLASLENF-----PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTS-CCCCSTTC-----CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred cChhhhcCCccccEEECCCC-CccccCch-----hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 764 5889999999999987 34443321 12235566666666666554 2456666666666666666666544
Q ss_pred Cc-ccccCCCCcEEecCCCCCCCcCcccccCCccCc-EEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcc-cCC
Q 005207 204 PL-SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLR-NLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IEL 280 (709)
Q Consensus 204 p~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~-~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~-~~~ 280 (709)
+. .+..+.+|+ .|. .|++++|.+....+..+.. .+|++|++++|.++.+|.. +..
T Consensus 165 ~~~~~~~l~~L~---------------------~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 165 YCTDLRVLHQMP---------------------LLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp CGGGGHHHHTCT---------------------TCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTT
T ss_pred CHHHhhhhhhcc---------------------ccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcc
Confidence 32 333333333 111 4555555544333333322 2566666666666655543 456
Q ss_pred CCCCCEEeccCCCCC
Q 005207 281 LPGLELLNLNDCKNF 295 (709)
Q Consensus 281 l~~L~~L~L~~~~~~ 295 (709)
+++|+.|++++|++.
T Consensus 223 l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 223 LTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCSCCEEECCSSCBC
T ss_pred cccccEEEccCCccc
Confidence 666677777666544
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=8.4e-19 Score=178.58 Aligned_cols=149 Identities=17% Similarity=0.174 Sum_probs=72.2
Q ss_pred cceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCc
Q 005207 190 LQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 269 (709)
Q Consensus 190 L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~ 269 (709)
.+.++++++.++.+|..+. .+|+.|++++|......+..+.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4455555555555554332 34555555554433222233444555555555544444333333344444444444444
Q ss_pred cCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcc-
Q 005207 270 SITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSS- 348 (709)
Q Consensus 270 ~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~- 348 (709)
.+..++ +..+..+++|++|++++|.+....+..++.+++|+.|++++|.+..++..
T Consensus 96 ~l~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 152 (270)
T 2o6q_A 96 KLQALP-----------------------IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152 (270)
T ss_dssp CCCCCC-----------------------TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCCcCC-----------------------HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH
Confidence 444433 33444555555555555555554455555666666666666666655443
Q ss_pred cccccCCcEEEccCC
Q 005207 349 VFLMKNLRTLSFSGC 363 (709)
Q Consensus 349 ~~~l~~L~~L~L~~~ 363 (709)
+..+++|++|++++|
T Consensus 153 ~~~l~~L~~L~L~~n 167 (270)
T 2o6q_A 153 FDKLTSLKELRLYNN 167 (270)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred ccCCcccceeEecCC
Confidence 233344444444433
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.3e-18 Score=177.07 Aligned_cols=177 Identities=20% Similarity=0.203 Sum_probs=91.9
Q ss_pred ccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCccc-ccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeC
Q 005207 166 LKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSG 244 (709)
Q Consensus 166 L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l-~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~ 244 (709)
|+.|++++|.+....+..+..+++|++|++++|.++.+|..+ ..+++|++|++++|......+..+.++++|++|++++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 118 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC
Confidence 444444444444444445555666666666666665555433 4455555555555443333333345555666666666
Q ss_pred CCCCCcCchhhccCCCCCeeeccCccCcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCC
Q 005207 245 CSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVP 323 (709)
Q Consensus 245 ~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~ 323 (709)
|.+....+..+..+++|++|++++|.+..++.. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 555555555555556666666666655555443 4555555555555555444444444455555555555554443333
Q ss_pred ccccCCCccceeecccccc
Q 005207 324 DTLGQVESLEELDISETAV 342 (709)
Q Consensus 324 ~~l~~l~~L~~L~L~~n~i 342 (709)
..+..+++|+.|++++|.+
T Consensus 199 ~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 199 GAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTCTTCCEEECCSSCB
T ss_pred HHhccccCCCEEEecCCCe
Confidence 3344445555555555444
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.81 E-value=8.9e-20 Score=186.01 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=47.2
Q ss_pred ccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCC
Q 005207 231 ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLK 309 (709)
Q Consensus 231 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~ 309 (709)
+..+++|++|++++|.+....+..+..+++|++|++++|.+..++.. +..+++|+.|++++|.+. +.+++|+
T Consensus 153 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~ 225 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIR 225 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTH
T ss_pred hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHH
Confidence 34444455555554444444444444555555555555555544432 455555555555555433 2244555
Q ss_pred EEEeeCcCCCccCCccccCCC
Q 005207 310 TLNLSGCCKLENVPDTLGQVE 330 (709)
Q Consensus 310 ~L~L~~~~~~~~~~~~l~~l~ 330 (709)
.|++..|...+.+|..++.+.
T Consensus 226 ~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 226 YLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp HHHHHHHHTGGGBBCTTSCBC
T ss_pred HHHHHHHhCCCcccCcccccC
Confidence 666666666666665555443
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=2.9e-19 Score=178.49 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=39.2
Q ss_pred CCCCEEeccCCC-CCCCCCCCCCCCC-CCCCEEEcCCCCCcccChhhhcCCCcCeeccccccc
Q 005207 399 RSLTKLDLSDCG-LGEGAIPSDIGNL-HSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKR 459 (709)
Q Consensus 399 ~~L~~L~Ls~n~-l~~~~~~~~l~~l-~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 459 (709)
++|+.|++++|+ +. ...+..+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++..
T Consensus 179 ~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp CEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred CCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence 566667777774 53 3334567777 7888888888888877764 677777777777653
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=5.2e-19 Score=180.33 Aligned_cols=206 Identities=20% Similarity=0.240 Sum_probs=101.1
Q ss_pred CCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeec
Q 005207 187 MECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNL 266 (709)
Q Consensus 187 l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L 266 (709)
+++|+.|+++++.+..++ .+..+++|+.|++++|... .++ .+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-DIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-CCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-Cch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 444455555555444443 2444555555555554322 222 3444555555555555544444444455555555555
Q ss_pred cCccCcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccC
Q 005207 267 DGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRP 345 (709)
Q Consensus 267 ~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l 345 (709)
++|.+..++.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.++.+
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 55555544432 34455555555555544433333344445555555555444433333344444444444444444433
Q ss_pred CcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCC
Q 005207 346 PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHS 425 (709)
Q Consensus 346 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 425 (709)
+... +..+++|+.|++++|.+. +.+++
T Consensus 197 ~~~~---------------------------------------------~~~l~~L~~L~l~~N~~~--------~~~~~ 223 (272)
T 3rfs_A 197 PDGV---------------------------------------------FDRLTSLQYIWLHDNPWD--------CTCPG 223 (272)
T ss_dssp CTTT---------------------------------------------TTTCTTCCEEECCSSCBC--------CCTTT
T ss_pred CHHH---------------------------------------------HhCCcCCCEEEccCCCcc--------ccCcH
Confidence 3221 445556666666666553 23456
Q ss_pred CCEEEcCCCCCc-ccChhhhcCCC
Q 005207 426 LNELYLSKNNFV-TLPASINSLLN 448 (709)
Q Consensus 426 L~~L~L~~n~l~-~lp~~i~~l~~ 448 (709)
|+.|+++.|++. .+|.++..++.
T Consensus 224 l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 224 IRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp THHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHHHHHHHhCCCcccCcccccCC
Confidence 666666666666 56655554433
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=6.3e-20 Score=193.24 Aligned_cols=245 Identities=18% Similarity=0.194 Sum_probs=161.4
Q ss_pred CceEEEcccCCccccccccccc--cCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccc-cCcccccccccccCCC
Q 005207 89 KIVEFKMCYSRIEELWKGIKHL--NMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRK-VHPSLLLHNKLIFVES 165 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~~~~~~l--~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-~~~~i~~l~~L~~l~~ 165 (709)
.++.++++++.+. +..+..+ ++++.|++++|.+....+.+..+++|++|++++|..-.. ++.. +..+++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~------~~~~~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI------LSQCSK 119 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH------HTTBCC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH------HhhCCC
Confidence 3566777776665 3445555 777888888877766666667778888888888742212 3322 233567
Q ss_pred ccEEEccCCCCCCcCCccccCCCccceeeccCC-Ccc--ccCcccccCCCCcEEecCCCCCCCc--CcccccCCc-cCcE
Q 005207 166 LKILILSGCLKLRKFPHVVGSMECLQELLLDGT-DIK--ELPLSIEHLFGLVQLTLNDCKNLSS--LPVAISSFQ-CLRN 239 (709)
Q Consensus 166 L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~-~i~--~lp~~l~~l~~L~~L~L~~~~~l~~--lp~~l~~l~-~L~~ 239 (709)
|++|++++|.+.+..+..++.+++|++|++++| .++ .++..+..+++|++|++++|..+.. ++..+..++ +|++
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 788888888777677777777888888888887 566 3666677788888888888733332 455566777 8888
Q ss_pred EeeeCCC--CC-CcCchhhccCCCCCeeeccCcc-Cc-ccCcccCCCCCCCEEeccCCCC-CccccccccCCCCCCEEEe
Q 005207 240 LKLSGCS--KL-KKFPQIVTTMEDLSELNLDGTS-IT-EVPSSIELLPGLELLNLNDCKN-FARVPSSINGLKSLKTLNL 313 (709)
Q Consensus 240 L~Ls~~~--~~-~~~~~~~~~l~~L~~L~L~~~~-i~-~l~~~~~~l~~L~~L~L~~~~~-~~~l~~~~~~l~~L~~L~L 313 (709)
|++++|. +. ..++..+..+++|++|++++|. ++ ..+..+..+++|+.|++++|.. .......+..+++|++|++
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence 8888873 33 3456666777888888888877 44 4555667778888888887752 1222224667778888888
Q ss_pred eCcCCCccCCccccCC-CccceeeccccccccC
Q 005207 314 SGCCKLENVPDTLGQV-ESLEELDISETAVRRP 345 (709)
Q Consensus 314 ~~~~~~~~~~~~l~~l-~~L~~L~L~~n~i~~l 345 (709)
++| ... ..+..+ .++..|++++|.++..
T Consensus 280 ~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 280 FGI-VPD---GTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp TTS-SCT---TCHHHHHHHSTTSEESCCCSCCT
T ss_pred cCc-cCH---HHHHHHHhhCcceEEecccCccc
Confidence 877 111 123333 2366666777777644
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=7.1e-19 Score=175.66 Aligned_cols=194 Identities=15% Similarity=0.111 Sum_probs=79.5
Q ss_pred CceEEEcccCCcccccc-ccccccCCcEEEcCCCC-CCCCCC-CCCCCCCccEEeccCCccccccCcccccccccccCCC
Q 005207 89 KIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSE-NLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVES 165 (709)
Q Consensus 89 ~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~-~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~ 165 (709)
+|++|++++|+|+.++. .+..+++|++|++++|+ +....+ .|.++++|++|++++|..+..+++.. +..+++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~-----f~~l~~ 106 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA-----LKELPL 106 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS-----EECCTT
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH-----hCCCCC
Confidence 44445555544444443 34444444444444443 222222 24444444444444422333333211 111233
Q ss_pred ccEEEccCCCCCCcCCccccCCCccc---eeeccCC-CccccCcc-cccCCCCc-EEecCCCCCCCcCcccccCCccCcE
Q 005207 166 LKILILSGCLKLRKFPHVVGSMECLQ---ELLLDGT-DIKELPLS-IEHLFGLV-QLTLNDCKNLSSLPVAISSFQCLRN 239 (709)
Q Consensus 166 L~~L~Ls~~~~~~~~~~~l~~l~~L~---~L~l~~~-~i~~lp~~-l~~l~~L~-~L~L~~~~~l~~lp~~l~~l~~L~~ 239 (709)
|++|++++|.+.+ +|. +..+++|+ +|++++| .++.+|.. +..+++|+ .|++++|... .+|......++|++
T Consensus 107 L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~ 183 (239)
T 2xwt_C 107 LKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDA 183 (239)
T ss_dssp CCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEE
T ss_pred CCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCE
Confidence 3333333333322 222 33333333 4444444 44433322 33344444 4444433222 22222111244555
Q ss_pred EeeeCCC-CCCcCchhhccC-CCCCeeeccCccCcccCcccCCCCCCCEEeccCC
Q 005207 240 LKLSGCS-KLKKFPQIVTTM-EDLSELNLDGTSITEVPSSIELLPGLELLNLNDC 292 (709)
Q Consensus 240 L~Ls~~~-~~~~~~~~~~~l-~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~ 292 (709)
|++++|. +....+..+..+ ++|+.|++++|.++.+|.. .+++|+.|+++++
T Consensus 184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred EEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 5555553 333333444455 5555555555555555543 3455555555443
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=9.6e-19 Score=182.01 Aligned_cols=226 Identities=20% Similarity=0.158 Sum_probs=180.4
Q ss_pred CCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccc--cCCCccceeeccCCCcccc-C----c
Q 005207 133 APNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVV--GSMECLQELLLDGTDIKEL-P----L 205 (709)
Q Consensus 133 l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l--~~l~~L~~L~l~~~~i~~l-p----~ 205 (709)
...++.+.+.++..-.. .+..+.....+++|++|++++|.+.+..|..+ ..+++|++|++++|.+... + .
T Consensus 63 ~~~l~~l~l~~~~~~~~---~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQ---LLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp SCCCCEEEECSCCCBHH---HHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred hcceeEEEEeCCcCCHH---HHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 34577788877632111 11111122234679999999999999998887 8999999999999999852 2 3
Q ss_pred ccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCc--C--chhhccCCCCCeeeccCccCcccCcc----
Q 005207 206 SIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKK--F--PQIVTTMEDLSELNLDGTSITEVPSS---- 277 (709)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~--~--~~~~~~l~~L~~L~L~~~~i~~l~~~---- 277 (709)
.+..+++|++|++++|......+..++.+++|++|++++|.+.+. . +..+..+++|++|++++|.++.++..
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 345789999999999988777778899999999999999987643 2 23346889999999999999876652
Q ss_pred cCCCCCCCEEeccCCCCCccccccccCC---CCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCcccccccC
Q 005207 278 IELLPGLELLNLNDCKNFARVPSSINGL---KSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPSSVFLMKN 354 (709)
Q Consensus 278 ~~~l~~L~~L~L~~~~~~~~l~~~~~~l---~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~ 354 (709)
++.+++|++|++++|.+.+..|..+..+ ++|++|++++|.+. .+|..+. ++|+.|++++|.++.+|. +..+++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~ 295 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPE 295 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCC
Confidence 5778999999999999988878777776 69999999999877 6677664 899999999999998866 678899
Q ss_pred CcEEEccCCCC
Q 005207 355 LRTLSFSGCNG 365 (709)
Q Consensus 355 L~~L~L~~~~~ 365 (709)
|+.|++++|+.
T Consensus 296 L~~L~L~~N~l 306 (310)
T 4glp_A 296 VDNLTLDGNPF 306 (310)
T ss_dssp CSCEECSSTTT
T ss_pred ccEEECcCCCC
Confidence 99999999984
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=2.4e-20 Score=196.41 Aligned_cols=81 Identities=17% Similarity=0.134 Sum_probs=33.1
Q ss_pred CCccEEEccCCCCCCcCCccccCCCccceeeccCCCccc--cCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEe
Q 005207 164 ESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKE--LPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLK 241 (709)
Q Consensus 164 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~--lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 241 (709)
++++.|++++|.+.+..+. +..+++|++|++++|.+.. ++..+..+++|++|++++|......+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 3444444444444433333 2234444444444444431 333344444444444444433223333333344444444
Q ss_pred eeCC
Q 005207 242 LSGC 245 (709)
Q Consensus 242 Ls~~ 245 (709)
+++|
T Consensus 149 L~~~ 152 (336)
T 2ast_B 149 LSGC 152 (336)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 4443
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=2.1e-20 Score=200.92 Aligned_cols=254 Identities=15% Similarity=0.155 Sum_probs=133.2
Q ss_pred ceEEEcccCCccccccccccccCCcEEEcCCCCCCCCC-----CCCCCCCCccEEeccCCc--ccc-ccCcccccc-ccc
Q 005207 90 IVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKT-----PDFTEAPNLEELYLEGCT--KLR-KVHPSLLLH-NKL 160 (709)
Q Consensus 90 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~-----~~~~~l~~L~~L~L~~~~--~l~-~~~~~i~~l-~~L 160 (709)
|+...++...+..++..+..+++|+.|+|++|.+.... ..+..+++|++|+|++|. .+. .+|..+..+ ..+
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 33334444455556666677777777777777655432 236677777777777762 111 233333211 123
Q ss_pred ccCCCccEEEccCCCCCC----cCCccccCCCccceeeccCCCcc-----ccCcccccC---------CCCcEEecCCCC
Q 005207 161 IFVESLKILILSGCLKLR----KFPHVVGSMECLQELLLDGTDIK-----ELPLSIEHL---------FGLVQLTLNDCK 222 (709)
Q Consensus 161 ~~l~~L~~L~Ls~~~~~~----~~~~~l~~l~~L~~L~l~~~~i~-----~lp~~l~~l---------~~L~~L~L~~~~ 222 (709)
..+++|++|++++|.+.. .+|..+..+++|++|++++|.+. .++..+..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 445677777777777665 35666677777777777777765 233333333 566666666655
Q ss_pred CC-CcCc---ccccCCccCcEEeeeCCCCCC-----cCchhhccCCCCCeeeccCccC-----cccCcccCCCCCCCEEe
Q 005207 223 NL-SSLP---VAISSFQCLRNLKLSGCSKLK-----KFPQIVTTMEDLSELNLDGTSI-----TEVPSSIELLPGLELLN 288 (709)
Q Consensus 223 ~l-~~lp---~~l~~l~~L~~L~Ls~~~~~~-----~~~~~~~~l~~L~~L~L~~~~i-----~~l~~~~~~l~~L~~L~ 288 (709)
.. ..++ ..+..+++|++|++++|.+.. ..+..+..+++|++|+|++|.+ ..+|..+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 43 2233 234445566666666655442 1222444555555555555555 23444445555555555
Q ss_pred ccCCCCCcc----cccccc--CCCCCCEEEeeCcCCCc----cCCccc-cCCCccceeeccccccc
Q 005207 289 LNDCKNFAR----VPSSIN--GLKSLKTLNLSGCCKLE----NVPDTL-GQVESLEELDISETAVR 343 (709)
Q Consensus 289 L~~~~~~~~----l~~~~~--~l~~L~~L~L~~~~~~~----~~~~~l-~~l~~L~~L~L~~n~i~ 343 (709)
+++|.+... ++..+. .+++|++|++++|.+.. .+|..+ .++++|+.|++++|.++
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 555554433 233332 24555555555554443 233333 33444444444444444
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=2.7e-18 Score=178.26 Aligned_cols=189 Identities=17% Similarity=0.253 Sum_probs=102.5
Q ss_pred cCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCc
Q 005207 66 NKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCT 145 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~ 145 (709)
++|++|+++++.++.+|....+++|++|++++|+++.++. +..+++|++|+|++|++.. .+.+..+++|++|++++|
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n- 117 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTST- 117 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CGGGTTCTTCCEEECTTS-
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-chhhcCCCCCCEEECCCC-
Confidence 4677777777777766643366777777777777776665 6677777777777776433 345666666666666665
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLS 225 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~ 225 (709)
.+..++. +..+++|++|++++|.+.+..+ ++.+++|+.|++++|.++.++.
T Consensus 118 ~l~~~~~-------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-------------------- 168 (308)
T 1h6u_A 118 QITDVTP-------LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-------------------- 168 (308)
T ss_dssp CCCCCGG-------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--------------------
T ss_pred CCCCchh-------hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--------------------
Confidence 2333221 2234445555555554433222 4444445555554444444443
Q ss_pred cCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCC
Q 005207 226 SLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKN 294 (709)
Q Consensus 226 ~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~ 294 (709)
+..+++|+.|++++|.+....+ +..+++|++|++++|.+..++. +..+++|+.|++++|++
T Consensus 169 -----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 169 -----LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp -----GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEE
T ss_pred -----hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCee
Confidence 4444455555555444433222 4445555555555555554442 45555555555555543
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=1.5e-18 Score=180.13 Aligned_cols=193 Identities=18% Similarity=0.271 Sum_probs=136.0
Q ss_pred CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCC
Q 005207 86 QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVES 165 (709)
Q Consensus 86 ~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~ 165 (709)
.+++|++|+++++.++.++ ++..+++|+.|+|++|.+....+ +..+++|++|++++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n--------------------- 95 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN--------------------- 95 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC---------------------
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC---------------------
Confidence 4556666666666666554 45556666666666655443333 555555555555554
Q ss_pred ccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCC
Q 005207 166 LKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGC 245 (709)
Q Consensus 166 L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~ 245 (709)
.+.+. ..+..+++|++|++++|.++.++. +..+++|+.|++++|.. ..++. +..+++|++|++++|
T Consensus 96 ---------~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 96 ---------PLKNV--SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQI-TNISP-LAGLTNLQYLSIGNA 161 (308)
T ss_dssp ---------CCSCC--GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GGGCTTCCEEECCSS
T ss_pred ---------cCCCc--hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCcc-CcCcc-ccCCCCccEEEccCC
Confidence 43321 235566667777777777776654 67777777777777654 33444 777889999999998
Q ss_pred CCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCc
Q 005207 246 SKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLE 320 (709)
Q Consensus 246 ~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~ 320 (709)
.+....+ +..+++|+.|++++|.++.++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|....
T Consensus 162 ~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 162 QVSDLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCCCChh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 7765433 8899999999999999998876 8899999999999998876543 7899999999999998644
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=4.5e-18 Score=180.07 Aligned_cols=237 Identities=19% Similarity=0.249 Sum_probs=141.7
Q ss_pred cEEEeeCCCCCCCCCcCCcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCCCC--CCCCCCCccEEeccCCc
Q 005207 69 RLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIKTP--DFTEAPNLEELYLEGCT 145 (709)
Q Consensus 69 ~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~--~~~~l~~L~~L~L~~~~ 145 (709)
+.++.+++.++++|..+ ++++++|+|++|+|+.+|. .|.++++|++|+|++|++...++ .|.++++|+++.+.++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 45667777777777655 4577777777777777774 46777777777777777655433 36677777665444444
Q ss_pred cccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccC-CCccccCcc-cccC-CCCcEEecCCCC
Q 005207 146 KLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDG-TDIKELPLS-IEHL-FGLVQLTLNDCK 222 (709)
Q Consensus 146 ~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~-~~i~~lp~~-l~~l-~~L~~L~L~~~~ 222 (709)
.+..+++.. +..+++|++|++++|.+....+..+....++..|++.+ +.+..++.. +..+ ..++.|++++|.
T Consensus 91 ~l~~l~~~~-----f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 91 NLLYINPEA-----FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp TCCEECTTS-----BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred cccccCchh-----hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 566555432 22355666666666666555555555555666666644 455555542 3333 346666666644
Q ss_pred CCCcCcccccCCccCcEEeeeCCCCCCcCc-hhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCcccccc
Q 005207 223 NLSSLPVAISSFQCLRNLKLSGCSKLKKFP-QIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSS 301 (709)
Q Consensus 223 ~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~-~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~ 301 (709)
++.+|.......+|++|++.++...+.+| ..+.++++|++|++++|+++.+|.. .+.+|+.|.+.++..++.+|.
T Consensus 166 -i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~- 241 (350)
T 4ay9_X 166 -IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT- 241 (350)
T ss_dssp -CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-
T ss_pred -ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC-
Confidence 33444444445566666666555444444 3456677777777777777776652 245566666655555555553
Q ss_pred ccCCCCCCEEEeeC
Q 005207 302 INGLKSLKTLNLSG 315 (709)
Q Consensus 302 ~~~l~~L~~L~L~~ 315 (709)
+..+++|+.+++.+
T Consensus 242 l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 242 LEKLVALMEASLTY 255 (350)
T ss_dssp TTTCCSCCEEECSC
T ss_pred chhCcChhhCcCCC
Confidence 45556666666543
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=2.9e-20 Score=199.87 Aligned_cols=134 Identities=18% Similarity=0.197 Sum_probs=70.9
Q ss_pred CCCCEEEeeCcCCC-ccCC---ccccCCCccceeeccccccc------cCCcccccccCCcEEEccCCCCCCCCCccccc
Q 005207 306 KSLKTLNLSGCCKL-ENVP---DTLGQVESLEELDISETAVR------RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLH 375 (709)
Q Consensus 306 ~~L~~L~L~~~~~~-~~~~---~~l~~l~~L~~L~L~~n~i~------~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 375 (709)
++|++|++++|.+. ..++ ..+..+++|++|++++|.+. ..+..+..+++|++|++++|.....
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~------- 231 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL------- 231 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH-------
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH-------
Confidence 45555555555443 2222 23344555555555555554 1222445555666666665552100
Q ss_pred cccccccCccccccccCC-CCCCCCCCCEEeccCCCCCCC---CCCCCC--CCCCCCCEEEcCCCCCcc-----cChhh-
Q 005207 376 LPFNLMGKSSCLVALMLP-SLSGLRSLTKLDLSDCGLGEG---AIPSDI--GNLHSLNELYLSKNNFVT-----LPASI- 443 (709)
Q Consensus 376 ~~~~~~~~~~~~~~~~lp-~l~~l~~L~~L~Ls~n~l~~~---~~~~~l--~~l~~L~~L~L~~n~l~~-----lp~~i- 443 (709)
....+| .+..+++|+.|+|++|.+... .++..+ +.+++|+.|+|++|.++. +|..+
T Consensus 232 ------------g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~ 299 (386)
T 2ca6_A 232 ------------GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299 (386)
T ss_dssp ------------HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence 000011 144556677777777766421 123444 336777777777777775 67666
Q ss_pred hcCCCcCeecccccc
Q 005207 444 NSLLNLKELEMEDCK 458 (709)
Q Consensus 444 ~~l~~L~~L~L~~c~ 458 (709)
.++++|+.|++++|+
T Consensus 300 ~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 300 EKMPDLLFLELNGNR 314 (386)
T ss_dssp HHCTTCCEEECTTSB
T ss_pred hcCCCceEEEccCCc
Confidence 557777888777775
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=1.4e-17 Score=176.39 Aligned_cols=223 Identities=18% Similarity=0.220 Sum_probs=128.1
Q ss_pred eeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcc-cccCCccCcEEeeeCCCCCCcCc-hhhccCCCCCe-eeccC
Q 005207 192 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKFP-QIVTTMEDLSE-LNLDG 268 (709)
Q Consensus 192 ~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~~~~~~~~~-~~~~~l~~L~~-L~L~~ 268 (709)
.++.++++++++|..+ ..++++|+|++|+ ++.+|. +|.++++|++|+|++|.+.+.++ ..+.+++++.+ +.+.+
T Consensus 13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4455555555555544 2455566666544 333432 45666666666666666554443 34455555543 34445
Q ss_pred ccCcccC-cccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCc-cccCC-CccceeeccccccccC
Q 005207 269 TSITEVP-SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPD-TLGQV-ESLEELDISETAVRRP 345 (709)
Q Consensus 269 ~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~-~l~~l-~~L~~L~L~~n~i~~l 345 (709)
|.+..++ ..+..+++|++|++++|.+....+..+....++..|++.++..+..++. .+..+ ..++.|++++|.++.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 6666553 3456666666666666665554444444555666777766655554443 34444 3577778888887777
Q ss_pred CcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCC-CCCCCCC
Q 005207 346 PSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIP-SDIGNLH 424 (709)
Q Consensus 346 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~-~~l~~l~ 424 (709)
+...+...+|++|++.++. .+ +.+| ..+..++
T Consensus 170 ~~~~f~~~~L~~l~l~~~n---------------------------------------------~l--~~i~~~~f~~l~ 202 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNN---------------------------------------------NL--EELPNDVFHGAS 202 (350)
T ss_dssp CTTSSTTEEEEEEECTTCT---------------------------------------------TC--CCCCTTTTTTEE
T ss_pred ChhhccccchhHHhhccCC---------------------------------------------cc--cCCCHHHhccCc
Confidence 7666555555555555433 22 2233 3456677
Q ss_pred CCCEEEcCCCCCcccChhhhcCCCcCeeccccccccccCCCC
Q 005207 425 SLNELYLSKNNFVTLPASINSLLNLKELEMEDCKRLQFLPQL 466 (709)
Q Consensus 425 ~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l 466 (709)
+|++|+|++|+++.+|.. .+.+|+.|.+.+|..++.+|.+
T Consensus 203 ~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l 242 (350)
T 4ay9_X 203 GPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTL 242 (350)
T ss_dssp CCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCT
T ss_pred ccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCc
Confidence 777777777777777652 3556666666666666666643
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=5.2e-18 Score=176.46 Aligned_cols=200 Identities=21% Similarity=0.237 Sum_probs=122.1
Q ss_pred cCcEEeeeCCCCCCcCchhh--ccCCCCCeeeccCccCccc-C----cccCCCCCCCEEeccCCCCCccccccccCCCCC
Q 005207 236 CLRNLKLSGCSKLKKFPQIV--TTMEDLSELNLDGTSITEV-P----SSIELLPGLELLNLNDCKNFARVPSSINGLKSL 308 (709)
Q Consensus 236 ~L~~L~Ls~~~~~~~~~~~~--~~l~~L~~L~L~~~~i~~l-~----~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L 308 (709)
+|++|++++|.+.+..|..+ ..+++|++|++++|.+... + ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34444444444444444433 4444555555555544421 1 122345566666666666555555566666666
Q ss_pred CEEEeeCcCCCcc--C--CccccCCCccceeeccccccccCCcc----cccccCCcEEEccCCCCCCCCCcccccccccc
Q 005207 309 KTLNLSGCCKLEN--V--PDTLGQVESLEELDISETAVRRPPSS----VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNL 380 (709)
Q Consensus 309 ~~L~L~~~~~~~~--~--~~~l~~l~~L~~L~L~~n~i~~l~~~----~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 380 (709)
++|++++|...+. + +..++.+++|++|++++|.++.++.. +..+++|++|++++|......+.
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~--------- 242 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP--------- 242 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS---------
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh---------
Confidence 6666666665432 1 22335677777777777777655542 34567888888888774332110
Q ss_pred ccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCCCCCCCCEEEcCCCCCcccChhhhcCCCcCeeccccccc
Q 005207 381 MGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIGNLHSLNELYLSKNNFVTLPASINSLLNLKELEMEDCKR 459 (709)
Q Consensus 381 ~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 459 (709)
.+..+..+++|+.|+|++|++. .+|..+. ++|++|+|++|+++.+|. +..+++|+.|++++|+.
T Consensus 243 ----------~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 243 ----------SAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp ----------CCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred ----------hHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence 0111223468889999999885 4677664 789999999999988765 67888999999988863
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.75 E-value=1.6e-19 Score=192.12 Aligned_cols=177 Identities=15% Similarity=0.096 Sum_probs=106.6
Q ss_pred EEEccCCCCCCcCCccccCCCccceeeccCCCccccC-----cccccCC-CCcEEecCCCCCCCcCcccccCC-----cc
Q 005207 168 ILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP-----LSIEHLF-GLVQLTLNDCKNLSSLPVAISSF-----QC 236 (709)
Q Consensus 168 ~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp-----~~l~~l~-~L~~L~L~~~~~l~~lp~~l~~l-----~~ 236 (709)
+++++.|.+.+.+|..+...++|++|++++|.++..+ ..+..++ +|++|++++|......+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3566777777777777777777888888888877655 4566676 77788887776555545444443 77
Q ss_pred CcEEeeeCCCCCCcCchhh----ccC-CCCCeeeccCccCcccCcc-----cCC-CCCCCEEeccCCCCCcc----cccc
Q 005207 237 LRNLKLSGCSKLKKFPQIV----TTM-EDLSELNLDGTSITEVPSS-----IEL-LPGLELLNLNDCKNFAR----VPSS 301 (709)
Q Consensus 237 L~~L~Ls~~~~~~~~~~~~----~~l-~~L~~L~L~~~~i~~l~~~-----~~~-l~~L~~L~L~~~~~~~~----l~~~ 301 (709)
|++|++++|.+....+..+ ..+ ++|++|++++|.++..+.. +.. .++|++|++++|.+... ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 7777777777665555433 333 6777777777777654431 333 24677777776665432 2233
Q ss_pred ccCCC-CCCEEEeeCcCCCccCCcc----ccCC-Cccceeecccccccc
Q 005207 302 INGLK-SLKTLNLSGCCKLENVPDT----LGQV-ESLEELDISETAVRR 344 (709)
Q Consensus 302 ~~~l~-~L~~L~L~~~~~~~~~~~~----l~~l-~~L~~L~L~~n~i~~ 344 (709)
+..++ +|++|++++|.+.+..+.. +..+ ++|++|++++|.+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 33443 6666666666554433322 2223 355555555555553
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=6.5e-17 Score=162.68 Aligned_cols=175 Identities=17% Similarity=0.193 Sum_probs=116.4
Q ss_pred ccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccC
Q 005207 189 CLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDG 268 (709)
Q Consensus 189 ~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~ 268 (709)
..+.++++++.++.+|..+. .+++.|++++|......+..+.++++|++|++++|.+....+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34556666666666665544 4666666666665555555566677777777777766666666666777777777777
Q ss_pred ccCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCCc
Q 005207 269 TSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPPS 347 (709)
Q Consensus 269 ~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~ 347 (709)
|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.++.++.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 77776653 35667777777777776665555556667777777777776665555567777777777777777776655
Q ss_pred -ccccccCCcEEEccCCCC
Q 005207 348 -SVFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 348 -~~~~l~~L~~L~L~~~~~ 365 (709)
.+..+++|++|++++|+.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTTCTTCCEEECCSCCB
T ss_pred HHHhCCCCCCEEEeeCCce
Confidence 455677777777777763
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.73 E-value=1e-16 Score=161.15 Aligned_cols=174 Identities=21% Similarity=0.256 Sum_probs=123.2
Q ss_pred CCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccc
Q 005207 260 DLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISE 339 (709)
Q Consensus 260 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 339 (709)
+.++++++++.++.+|..+. ++++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34566667777777766543 5677777777777666666677777777777777777666666677777777777777
Q ss_pred cccccCCcc-cccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCC
Q 005207 340 TAVRRPPSS-VFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPS 418 (709)
Q Consensus 340 n~i~~l~~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~ 418 (709)
|.++.++.. +..+++|++|++++|...... ...+..+++|+.|+|++|++. +..+.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------~~~~~~l~~L~~L~Ls~N~l~-~~~~~ 149 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLP----------------------SGVFDRLTKLKELRLNTNQLQ-SIPAG 149 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcC----------------------hhHhccCCcccEEECcCCcCC-ccCHH
Confidence 777766643 456777777777777633111 011567788888888888885 44445
Q ss_pred CCCCCCCCCEEEcCCCCCcccCh-hhhcCCCcCeecccccc
Q 005207 419 DIGNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCK 458 (709)
Q Consensus 419 ~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 458 (709)
.+..+++|+.|+|++|+++.++. .+..+++|+.|++++|+
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 68888888888888888887765 56778888888888885
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=5.7e-17 Score=180.90 Aligned_cols=192 Identities=18% Similarity=0.258 Sum_probs=117.0
Q ss_pred hhcCCC-----CcceEEecCccccCcccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCc
Q 005207 40 AFSLMT-----NLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLK 114 (709)
Q Consensus 40 ~f~~l~-----~L~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 114 (709)
+|.+++ +|+.|++++|.+.+-...++++|++|++++|.++.+| ..+++|++|+|++|+|+.+|. +.. +|+
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~ 123 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLK 123 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCC
T ss_pred hhhhccccccCCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCC
Confidence 555554 6777777777766533334466777777777777777 345677777777777777666 443 777
Q ss_pred EEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceee
Q 005207 115 VMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELL 194 (709)
Q Consensus 115 ~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~ 194 (709)
.|+|++|++.. +|. .+++|+.|++++| .+..+|. .+++|++|++++|.+.+ +|. +. ++|+.|+
T Consensus 124 ~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N-~l~~lp~---------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~ 186 (571)
T 3cvr_A 124 HLDVDNNQLTM-LPE--LPALLEYINADNN-QLTMLPE---------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALD 186 (571)
T ss_dssp EEECCSSCCSC-CCC--CCTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEE
T ss_pred EEECCCCcCCC-CCC--cCccccEEeCCCC-ccCcCCC---------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEE
Confidence 77777776555 333 5667777777776 3444443 14566677777766555 444 44 6677777
Q ss_pred ccCCCccccCcccccCCCC-------cEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhcc
Q 005207 195 LDGTDIKELPLSIEHLFGL-------VQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTT 257 (709)
Q Consensus 195 l~~~~i~~lp~~l~~l~~L-------~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~ 257 (709)
+++|.++.+|. +.. +| +.|++++|. +..+|..+..+++|+.|++++|.+.+..|..+..
T Consensus 187 Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 187 VSTNLLESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCSSCCSSCCC-CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred CcCCCCCchhh-HHH--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 77777666665 433 45 666666543 3345555555666666666666655555554443
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=1.2e-18 Score=185.44 Aligned_cols=243 Identities=12% Similarity=0.096 Sum_probs=109.9
Q ss_pred EEeeCCCCCCCCCcC--CcCCceEEEcccCCccccc-----ccccccc-CCcEEEcCCCCCCCCCC-CCCCC-----CCc
Q 005207 71 LDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIEELW-----KGIKHLN-MLKVMKLSHSENLIKTP-DFTEA-----PNL 136 (709)
Q Consensus 71 L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~i~~l~-----~~~~~l~-~L~~L~Ls~~~~~~~~~-~~~~l-----~~L 136 (709)
++++.+.+......+ .+.+|++|+|++|.++..+ +.+..++ +|++|+|++|++....+ .+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 445555555433333 3344666666666666544 3445555 56666666665443322 12221 455
Q ss_pred cEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCcc----ccCC-CccceeeccCCCccccCc-----c
Q 005207 137 EELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHV----VGSM-ECLQELLLDGTDIKELPL-----S 206 (709)
Q Consensus 137 ~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~----l~~l-~~L~~L~l~~~~i~~lp~-----~ 206 (709)
++|+|++| .+.+..+.. +..+ ++|++|++++|.++..+. .
T Consensus 83 ~~L~Ls~n------------------------------~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 132 (362)
T 3goz_A 83 TSLNLSGN------------------------------FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132 (362)
T ss_dssp CEEECCSS------------------------------CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred cEEECcCC------------------------------cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence 55555554 333322221 2222 445555555555443322 1
Q ss_pred ccc-CCCCcEEecCCCCCCC----cCcccccCCc-cCcEEeeeCCCCCCcCchh----hccC-CCCCeeeccCccCcc--
Q 005207 207 IEH-LFGLVQLTLNDCKNLS----SLPVAISSFQ-CLRNLKLSGCSKLKKFPQI----VTTM-EDLSELNLDGTSITE-- 273 (709)
Q Consensus 207 l~~-l~~L~~L~L~~~~~l~----~lp~~l~~l~-~L~~L~Ls~~~~~~~~~~~----~~~l-~~L~~L~L~~~~i~~-- 273 (709)
+.. ..+|++|++++|.... .++..+..++ +|++|++++|.+....+.. +..+ ++|++|+|++|.+..
T Consensus 133 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~ 212 (362)
T 3goz_A 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS 212 (362)
T ss_dssp HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence 222 2355555555544332 1222223333 5555555555554443322 2233 356666666665554
Q ss_pred ---cCcccCC-CCCCCEEeccCCCCCcccc----ccccCCCCCCEEEeeCcCCCc-------cCCccccCCCccceeecc
Q 005207 274 ---VPSSIEL-LPGLELLNLNDCKNFARVP----SSINGLKSLKTLNLSGCCKLE-------NVPDTLGQVESLEELDIS 338 (709)
Q Consensus 274 ---l~~~~~~-l~~L~~L~L~~~~~~~~l~----~~~~~l~~L~~L~L~~~~~~~-------~~~~~l~~l~~L~~L~L~ 338 (709)
++..+.. .++|+.|++++|.+....+ ..+..+++|++|++++|.... .++..+..+++|+.|+++
T Consensus 213 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~ 292 (362)
T 3goz_A 213 YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292 (362)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTT
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecC
Confidence 3333333 2355555555555443222 223445556666665554211 122233444555555555
Q ss_pred ccccc
Q 005207 339 ETAVR 343 (709)
Q Consensus 339 ~n~i~ 343 (709)
+|.+.
T Consensus 293 ~N~l~ 297 (362)
T 3goz_A 293 GKEIH 297 (362)
T ss_dssp SCBCC
T ss_pred CCcCC
Confidence 55544
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=2e-16 Score=176.44 Aligned_cols=187 Identities=20% Similarity=0.223 Sum_probs=84.5
Q ss_pred CccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCcc
Q 005207 67 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTK 146 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~ 146 (709)
+|+.|++++|.++.+|..+ +++|++|+|++|+|+.+| ..+++|++|+|++|++.. +|.+.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~N-- 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDNN-- 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSS--
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCCC--
Confidence 5555555555555555543 245555555555555555 234555555555554433 222322 4445555444
Q ss_pred ccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCc
Q 005207 147 LRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS 226 (709)
Q Consensus 147 l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~ 226 (709)
.+.+ +|. .+++|+.|++++|.++.+|. .+++|+.|++++|... .
T Consensus 131 ----------------------------~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~-~ 174 (571)
T 3cvr_A 131 ----------------------------QLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLT-F 174 (571)
T ss_dssp ----------------------------CCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-C
T ss_pred ----------------------------cCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCC-C
Confidence 3322 222 23444444444444444443 2334444444443321 2
Q ss_pred CcccccCCccCcEEeeeCCCCCCcCchhhcc-----CCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCcccccc
Q 005207 227 LPVAISSFQCLRNLKLSGCSKLKKFPQIVTT-----MEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSS 301 (709)
Q Consensus 227 lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~-----l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~ 301 (709)
+|. +. ++|+.|++++|.+. .+|. +.. .+.|+.|+|++|.|+.+|..+..+++|+.|++++|.+.+..|..
T Consensus 175 lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 175 LPE-LP--ESLEALDVSTNLLE-SLPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CCC-CC--TTCCEEECCSSCCS-SCCC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred cch-hh--CCCCEEECcCCCCC-chhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 333 22 34444444444333 2222 111 11125566666666655555555555555555555555555544
Q ss_pred cc
Q 005207 302 IN 303 (709)
Q Consensus 302 ~~ 303 (709)
+.
T Consensus 250 l~ 251 (571)
T 3cvr_A 250 LS 251 (571)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=7.7e-16 Score=158.28 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=34.3
Q ss_pred CccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCC
Q 005207 67 KLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGC 144 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~ 144 (709)
+|++|++++|.++.+|....+++|++|++++|+++.++. +..+++|+.|++++|++.. .+.+..+++|++|++++|
T Consensus 47 ~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LSSLKDLKKLKSLSLEHN 122 (291)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEEECTTS
T ss_pred cccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-ChhhccCCCCCEEECCCC
Confidence 455555555555554432344455555555555544433 4444444444444444322 222334444444444443
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=1.6e-15 Score=147.84 Aligned_cols=129 Identities=17% Similarity=0.211 Sum_probs=70.7
Q ss_pred cCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEee
Q 005207 236 CLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLS 314 (709)
Q Consensus 236 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~ 314 (709)
+|++|++++|.+....+..+..+++|++|++++|.++.++.. +..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 444444444444433333444555555555555555544432 3555555555555555544444445566666666666
Q ss_pred CcCCCccCCccccCCCccceeeccccccccCCcc-cccccCCcEEEccCCC
Q 005207 315 GCCKLENVPDTLGQVESLEELDISETAVRRPPSS-VFLMKNLRTLSFSGCN 364 (709)
Q Consensus 315 ~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~~~ 364 (709)
+|.+.+..+..+..+++|+.|++++|.++.++.. +..+++|++|++++|.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 6665555555566667777777777776665543 3345555555555553
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=1.2e-15 Score=156.83 Aligned_cols=167 Identities=21% Similarity=0.291 Sum_probs=89.0
Q ss_pred CCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEee
Q 005207 163 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 242 (709)
Q Consensus 163 l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 242 (709)
+++|+.|++++|.+... + .+..+++|++|++++|.++.++. +..+++|+.|++++
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~---------------------- 99 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE---------------------- 99 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS----------------------
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC----------------------
Confidence 34455555555544332 2 24445555555555555554444 44455555555554
Q ss_pred eCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccC
Q 005207 243 SGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENV 322 (709)
Q Consensus 243 s~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~ 322 (709)
|.+.. . ..+..+++|++|++++|.+..++ .+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..
T Consensus 100 --n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 100 --NKVKD-L-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp --SCCCC-G-GGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred --CcCCC-C-hhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 44332 1 12444555555555555555442 344555555555555554432 34555666666666666554433
Q ss_pred CccccCCCccceeeccccccccCCcccccccCCcEEEccCCC
Q 005207 323 PDTLGQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 323 ~~~l~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~~ 364 (709)
+ +..+++|+.|++++|.++.++. +..+++|+.|++++|+
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred h--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 3 5566666666666666666653 5666777777777665
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=8e-16 Score=173.53 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=97.2
Q ss_pred cceEEecCccccCc--ccccCcCccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCC
Q 005207 47 LGLLKINNVQLLEG--LEYLSNKLRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENL 124 (709)
Q Consensus 47 L~~L~l~~~~l~~~--~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~ 124 (709)
+..+.+..+.+.+. ...+ .+|+.|++++|.+..+|....+++|+.|+|++|+|+.++. +..+++|+.|+|++|++.
T Consensus 23 l~~l~l~~~~i~~~~~~~~L-~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHH-TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred HHHHhccCCCcccccchhcC-CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC
Confidence 44444555554432 2233 4788888888888887754477888888888888877765 777888888888887654
Q ss_pred CCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccC
Q 005207 125 IKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELP 204 (709)
Q Consensus 125 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp 204 (709)
. ++.+..+++|+.|+|++|. +..++ .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+..++
T Consensus 101 ~-l~~l~~l~~L~~L~Ls~N~-l~~l~-------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 101 D-LSSLKDLKKLKSLSLEHNG-ISDIN-------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp C-CTTSTTCTTCCEEECTTSC-CCCCG-------GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred C-ChhhccCCCCCEEEecCCC-CCCCc-------cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 3 4567777777777777762 33321 233355566666666555443 34455555555555555555443
Q ss_pred cccccCCCCcEEecCCC
Q 005207 205 LSIEHLFGLVQLTLNDC 221 (709)
Q Consensus 205 ~~l~~l~~L~~L~L~~~ 221 (709)
. +..+++|+.|+|++|
T Consensus 170 ~-l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 170 P-LAGLTKLQNLYLSKN 185 (605)
T ss_dssp G-GTTCTTCCEEECCSS
T ss_pred h-hccCCCCCEEECcCC
Confidence 3 444444444444444
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=5.8e-15 Score=143.77 Aligned_cols=156 Identities=19% Similarity=0.163 Sum_probs=76.0
Q ss_pred CccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcc-cccCCCCcEEecCCCCCCCcCcccccCCccCcEEeee
Q 005207 165 SLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS-IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLS 243 (709)
Q Consensus 165 ~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls 243 (709)
+|++|++++|.+.+..+..++.+++|++|++++|.++.+|.. +..+++|++|++++|......+..+.++++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 455555555555544444555566666666666665555443 3445555555555544332222234445555555555
Q ss_pred CCCCCCcCchhhccCCCCCeeeccCccCcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccC
Q 005207 244 GCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENV 322 (709)
Q Consensus 244 ~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~ 322 (709)
+|.+....+..+..+++|++|++++|.++.++.. +..+++|+.|++++|... +.+++|+.|+++.|...+.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCcee
Confidence 5554444444445555555555555555544432 344455555555544322 22334444444444444444
Q ss_pred Ccccc
Q 005207 323 PDTLG 327 (709)
Q Consensus 323 ~~~l~ 327 (709)
|..++
T Consensus 182 p~~~~ 186 (208)
T 2o6s_A 182 RNSAG 186 (208)
T ss_dssp BCTTS
T ss_pred eccCc
Confidence 44433
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=9e-15 Score=143.70 Aligned_cols=149 Identities=22% Similarity=0.326 Sum_probs=99.6
Q ss_pred CeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccc
Q 005207 262 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 341 (709)
Q Consensus 262 ~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 341 (709)
+.++++++.++++|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 467777777887776553 678888888887776666677778888888888887777777777778888888888887
Q ss_pred cccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCCC
Q 005207 342 VRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDIG 421 (709)
Q Consensus 342 i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l~ 421 (709)
++.+|... +.++++|+.|+|++|++. +..+..+.
T Consensus 92 l~~l~~~~---------------------------------------------f~~l~~L~~L~L~~N~l~-~~~~~~~~ 125 (220)
T 2v9t_B 92 ITELPKSL---------------------------------------------FEGLFSLQLLLLNANKIN-CLRVDAFQ 125 (220)
T ss_dssp CCCCCTTT---------------------------------------------TTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred CCccCHhH---------------------------------------------ccCCCCCCEEECCCCCCC-EeCHHHcC
Confidence 77666543 334445555555555553 33445566
Q ss_pred CCCCCCEEEcCCCCCcccCh-hhhcCCCcCeecccccc
Q 005207 422 NLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCK 458 (709)
Q Consensus 422 ~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 458 (709)
.+++|+.|+|++|+++.++. .+..+++|+.|+|++|+
T Consensus 126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 66666666666666665554 35556666666666654
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=6.2e-18 Score=189.62 Aligned_cols=216 Identities=16% Similarity=0.114 Sum_probs=137.3
Q ss_pred cCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCee
Q 005207 185 GSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSEL 264 (709)
Q Consensus 185 ~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L 264 (709)
..+++|+.|++++|.++.+|..++.+++|+.|++++|..+..+|..+ ..+...+..|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhcccC
Confidence 56788999999999999999999999999999987654222222100 0112233445555666666666
Q ss_pred e-ccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc
Q 005207 265 N-LDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 343 (709)
Q Consensus 265 ~-L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 343 (709)
+ ++.+.+.. |..+.+.+|.+.. ++. ..|+.|++++|.+.+ +|. ++.+++|+.|++++|.++
T Consensus 415 ~~l~~n~~~~----------L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 415 DPMRAAYLDD----------LRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp CGGGHHHHHH----------HHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC
T ss_pred cchhhcccch----------hhhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc
Confidence 5 44443322 2222222222111 111 135666666654443 454 666777777777777777
Q ss_pred cCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCC-CCCCCC
Q 005207 344 RPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAI-PSDIGN 422 (709)
Q Consensus 344 ~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~-~~~l~~ 422 (709)
.+|..+..+++|+.|+|++|.... +|.++.+++|+.|+|++|++. +.. |..++.
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~------------------------lp~l~~l~~L~~L~Ls~N~l~-~~~~p~~l~~ 531 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALEN------------------------VDGVANLPRLQELLLCNNRLQ-QSAAIQPLVS 531 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC------------------------CGGGTTCSSCCEEECCSSCCC-SSSTTGGGGG
T ss_pred ccchhhhcCCCCCEEECCCCCCCC------------------------CcccCCCCCCcEEECCCCCCC-CCCCcHHHhc
Confidence 777777777777777777776321 234677788888888888885 333 888889
Q ss_pred CCCCCEEEcCCCCCcccChhh----hcCCCcCeecc
Q 005207 423 LHSLNELYLSKNNFVTLPASI----NSLLNLKELEM 454 (709)
Q Consensus 423 l~~L~~L~L~~n~l~~lp~~i----~~l~~L~~L~L 454 (709)
+++|+.|+|++|+++.+|+.+ ..+++|+.|++
T Consensus 532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999999999998776543 34788887753
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=4.5e-15 Score=167.44 Aligned_cols=191 Identities=20% Similarity=0.212 Sum_probs=127.9
Q ss_pred ccEEEeeCCCCCCCCCcCCcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccc
Q 005207 68 LRLLDWHRYPLKSLPSNLQLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKL 147 (709)
Q Consensus 68 L~~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l 147 (709)
+..+.+..+.+..+...-.+.+|+.|++++|.|..++ ++..+++|+.|+|++|++....+ +..+++|+.|+|++| .+
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l 99 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KI 99 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CC
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CC
Confidence 3334445555555544446777777777777777765 56777777777777777655444 777777777777776 34
Q ss_pred cccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcC
Q 005207 148 RKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSL 227 (709)
Q Consensus 148 ~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~l 227 (709)
..++ .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|......
T Consensus 100 ~~l~-------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 100 KDLS-------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp CCCT-------TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCh-------hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCch
Confidence 4332 344467777777777776652 4467777777777777777776 56777777777777776544433
Q ss_pred cccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccC
Q 005207 228 PVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVP 275 (709)
Q Consensus 228 p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~ 275 (709)
| +..+++|+.|+|++|.+... ..+..+++|+.|+|++|.+...|
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 3 67777777777777766553 34667777777777777776554
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=8.3e-15 Score=143.96 Aligned_cols=151 Identities=23% Similarity=0.275 Sum_probs=101.6
Q ss_pred ceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCcc
Q 005207 191 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 270 (709)
Q Consensus 191 ~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~ 270 (709)
+.+++++++++.+|..+. .+|+.|++++|......+..+..+++|++|++++|.+....|..+.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456666667777766553 567777777765444444456777777777777777776667777777777777777777
Q ss_pred CcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc
Q 005207 271 ITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 343 (709)
Q Consensus 271 i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 343 (709)
++.+|.. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 7776654 466777777777777766666666666777777777776666655555666666666666666654
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=3.6e-15 Score=143.90 Aligned_cols=152 Identities=20% Similarity=0.267 Sum_probs=80.3
Q ss_pred cCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCee
Q 005207 185 GSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSEL 264 (709)
Q Consensus 185 ~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L 264 (709)
+.+++|+.|++++|.+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.+....+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~------------ 105 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKI------------ 105 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGS------------
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccC------------
Confidence 34455566666666555555 4555555555555554 222222 24444455555554444433333
Q ss_pred eccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccccccc
Q 005207 265 NLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRR 344 (709)
Q Consensus 265 ~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~ 344 (709)
..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++ .+..+++|+.|++++|.++.
T Consensus 106 -----------~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 106 -----------PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp -----------CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred -----------hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence 344445555555555555444444455555555555555555334443 45556666666666666665
Q ss_pred CCcccccccCCcEEEccCCC
Q 005207 345 PPSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 345 l~~~~~~l~~L~~L~L~~~~ 364 (709)
++ .+..+++|++|++++|+
T Consensus 174 ~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 174 YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CT-TGGGCSSCCEEEECBC-
T ss_pred hH-HhccCCCCCEEEeeCcc
Confidence 55 55566666666666665
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=8.1e-15 Score=141.43 Aligned_cols=133 Identities=14% Similarity=0.205 Sum_probs=114.0
Q ss_pred cCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEE
Q 005207 232 SSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTL 311 (709)
Q Consensus 232 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L 311 (709)
..+++|+.|++++|.+. .++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 55777888888887766 344 5777888888888888776664 67889999999999999888888899999999999
Q ss_pred EeeCcCCCccCCccccCCCccceeeccccc-cccCCcccccccCCcEEEccCCCCCCC
Q 005207 312 NLSGCCKLENVPDTLGQVESLEELDISETA-VRRPPSSVFLMKNLRTLSFSGCNGPPS 368 (709)
Q Consensus 312 ~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~-i~~l~~~~~~l~~L~~L~L~~~~~~~~ 368 (709)
++++|.+.+..+..++.+++|++|++++|. +..++ .+..+++|++|++++|.....
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh
Confidence 999999988888889999999999999998 88887 688999999999999986543
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=2.4e-14 Score=141.55 Aligned_cols=149 Identities=21% Similarity=0.268 Sum_probs=94.2
Q ss_pred CCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccc
Q 005207 261 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340 (709)
Q Consensus 261 L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 340 (709)
.+.++.+++.+..+|..+. ++|+.|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4566777777777776443 66777777777766666666666666666666666654444444555666666666666
Q ss_pred ccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCC
Q 005207 341 AVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI 420 (709)
Q Consensus 341 ~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l 420 (709)
.++.++... +..+++|+.|+|++|++. .+|..+
T Consensus 99 ~l~~l~~~~---------------------------------------------~~~l~~L~~L~Ls~N~l~--~lp~~~ 131 (229)
T 3e6j_A 99 QLTVLPSAV---------------------------------------------FDRLVHLKELFMCCNKLT--ELPRGI 131 (229)
T ss_dssp CCCCCCTTT---------------------------------------------TTTCTTCCEEECCSSCCC--SCCTTG
T ss_pred cCCccChhH---------------------------------------------hCcchhhCeEeccCCccc--ccCccc
Confidence 655544322 345566666666666663 466666
Q ss_pred CCCCCCCEEEcCCCCCcccCh-hhhcCCCcCeecccccc
Q 005207 421 GNLHSLNELYLSKNNFVTLPA-SINSLLNLKELEMEDCK 458 (709)
Q Consensus 421 ~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 458 (709)
..+++|+.|+|++|+++.+|. .+..+++|+.|++++|+
T Consensus 132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 667777777777777776664 35667777777777664
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=3.3e-14 Score=139.66 Aligned_cols=101 Identities=13% Similarity=0.167 Sum_probs=61.8
Q ss_pred CeeeccCccCcccCcccCCCCCCCEEeccCCCCCcccc-ccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccc
Q 005207 262 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVP-SSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340 (709)
Q Consensus 262 ~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 340 (709)
+.++++++.++.+|..+ .+.++.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 46677777777776644 3445677777776655533 34566777777777777666655556667777777777777
Q ss_pred ccccCCcc-cccccCCcEEEccCCC
Q 005207 341 AVRRPPSS-VFLMKNLRTLSFSGCN 364 (709)
Q Consensus 341 ~i~~l~~~-~~~l~~L~~L~L~~~~ 364 (709)
.++.++.. +..+++|++|++++|.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCc
Confidence 76665543 3334444444444443
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=3.7e-17 Score=183.33 Aligned_cols=185 Identities=16% Similarity=0.189 Sum_probs=101.5
Q ss_pred CcCCceEEEcccCCccccccccccccCCcEEEcCCCC-------------CCCCCC-CCCCCCCccEEe-ccCCcccccc
Q 005207 86 QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSE-------------NLIKTP-DFTEAPNLEELY-LEGCTKLRKV 150 (709)
Q Consensus 86 ~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~-------------~~~~~~-~~~~l~~L~~L~-L~~~~~l~~~ 150 (709)
..++|+.|+|++|+++.+|..++.+++|+.|++++|. .....| .++.+++|+.|+ ++.+ .+..+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccchh
Confidence 5788999999999999999999999999999997764 111122 345566666666 3332 22211
Q ss_pred Cccccccccccc--CCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCc
Q 005207 151 HPSLLLHNKLIF--VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLP 228 (709)
Q Consensus 151 ~~~i~~l~~L~~--l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp 228 (709)
+.....-..+.. ...|+.|++++|.+.+ +|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++|... .+|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-CCc
Confidence 110000000000 0235555665555444 343 55555555555555555555555555555555555554332 244
Q ss_pred ccccCCccCcEEeeeCCCCCCcC-chhhccCCCCCeeeccCccCcccC
Q 005207 229 VAISSFQCLRNLKLSGCSKLKKF-PQIVTTMEDLSELNLDGTSITEVP 275 (709)
Q Consensus 229 ~~l~~l~~L~~L~Ls~~~~~~~~-~~~~~~l~~L~~L~L~~~~i~~l~ 275 (709)
.++++++|++|+|++|.+.+.. |..+..+++|+.|+|++|.++.+|
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 3555555555555555554443 455555555555555555555443
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=3.3e-15 Score=151.16 Aligned_cols=122 Identities=22% Similarity=0.266 Sum_probs=50.2
Q ss_pred CcCCceEEEcccCCccccccccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCC
Q 005207 86 QLDKIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVES 165 (709)
Q Consensus 86 ~l~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~ 165 (709)
.+++|++|++++|+|+.++ ++..+++|+.|+|++|++....+ +..+++|++|++++| .+..++.. .. ++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~-------~~-~~ 107 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGI-------PS-AC 107 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTC-------CC-SS
T ss_pred hcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcc-------cc-Cc
Confidence 3444444444444444443 34444444444444444333222 444444444444443 22222210 00 23
Q ss_pred ccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCC
Q 005207 166 LKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDC 221 (709)
Q Consensus 166 L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~ 221 (709)
|++|++++|.+.+. +.+..+++|+.|++++|.++.++ .+..+++|+.|++++|
T Consensus 108 L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 108 LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS
T ss_pred ccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC
Confidence 34444444433321 12444444555555555444443 3444444444444443
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=2.8e-14 Score=140.16 Aligned_cols=113 Identities=18% Similarity=0.194 Sum_probs=51.3
Q ss_pred ccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCC
Q 005207 231 ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLK 309 (709)
Q Consensus 231 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~ 309 (709)
+.++++|++|++++|.+....+..+.++++|++|+|++|.++.++.. +..+++|++|++++|.+.+..|..+..+++|+
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence 33444444444444444443333444444444444444444444332 44444444444444444444444444444444
Q ss_pred EEEeeCcCCCccCCccccCCCccceeeccccccc
Q 005207 310 TLNLSGCCKLENVPDTLGQVESLEELDISETAVR 343 (709)
Q Consensus 310 ~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 343 (709)
+|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp EEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred EEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 4444444444444444444444444444444443
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=4.3e-14 Score=139.79 Aligned_cols=150 Identities=19% Similarity=0.144 Sum_probs=74.8
Q ss_pred ceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCcc
Q 005207 191 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 270 (709)
Q Consensus 191 ~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~ 270 (709)
+.++.+++.+..+|..+. ++|+.|++++|......|..+.++++|++|++++|.+....+..+..+++|++|+|++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 345555555555554432 455555555554444444445555555555555555544333444555555555555555
Q ss_pred CcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccc
Q 005207 271 ITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVR 343 (709)
Q Consensus 271 i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 343 (709)
++.++.. +..+++|+.|++++|.+. .+|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 5544432 344555555555555433 34444444555555555554444333334444455555555555444
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=2.1e-14 Score=152.44 Aligned_cols=173 Identities=16% Similarity=0.100 Sum_probs=123.6
Q ss_pred ceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCccccc-CCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCc
Q 005207 191 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAIS-SFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 269 (709)
Q Consensus 191 ~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~ 269 (709)
+.++++++.++.+|..+. ..++.|+|++|......+..+. ++++|++|+|++|.+....+..+..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456666666666665443 3466677777654444444454 6778888888887777766677778888888888888
Q ss_pred cCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccc---cCCCccceeeccccccccC
Q 005207 270 SITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTL---GQVESLEELDISETAVRRP 345 (709)
Q Consensus 270 ~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l---~~l~~L~~L~L~~n~i~~l 345 (709)
.+..++. .+..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+....+..+ ..+++|+.|+|++|.++.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 8887665 47778888888888888777777778888888888888887665433334 5688899999999999887
Q ss_pred Cc-ccccccC--CcEEEccCCCC
Q 005207 346 PS-SVFLMKN--LRTLSFSGCNG 365 (709)
Q Consensus 346 ~~-~~~~l~~--L~~L~L~~~~~ 365 (709)
|. .+..++. |+.|++++|..
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCE
T ss_pred CHHHhhhccHhhcceEEecCCCc
Confidence 74 4555665 47899998873
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=8.6e-15 Score=148.04 Aligned_cols=166 Identities=19% Similarity=0.259 Sum_probs=107.3
Q ss_pred CCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeec
Q 005207 187 MECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNL 266 (709)
Q Consensus 187 l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L 266 (709)
+.++..++++++.++.++ .+..+++|+.|++++|. +..++ .+..+++|++|++++|.+....+ +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 344555566666666555 45666666666666653 33445 36666677777776666554433 666677777777
Q ss_pred cCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccccccCC
Q 005207 267 DGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETAVRRPP 346 (709)
Q Consensus 267 ~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l~ 346 (709)
++|.++.++.... ++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+..+
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 7777776655333 6777777777765542 2466777777777777765543 2 566777777777777777766
Q ss_pred cccccccCCcEEEccCCC
Q 005207 347 SSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 347 ~~~~~l~~L~~L~L~~~~ 364 (709)
..+..+++|+.|++++|.
T Consensus 166 ~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTSTTCCCCCEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCc
Confidence 556677777888877776
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=2.4e-14 Score=152.01 Aligned_cols=178 Identities=20% Similarity=0.112 Sum_probs=92.0
Q ss_pred cEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCcccc-CCCccceeeccCCCccccCc-ccccCCCCc
Q 005207 137 EELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVG-SMECLQELLLDGTDIKELPL-SIEHLFGLV 214 (709)
Q Consensus 137 ~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~-~l~~L~~L~l~~~~i~~lp~-~l~~l~~L~ 214 (709)
+.++++++ .+..+|..+. +.++.|+|++|.+.+..+..+. .+++|+.|++++|.++.++. .+..+++|+
T Consensus 21 ~~l~c~~~-~l~~iP~~~~--------~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLP--------SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp TEEECCSS-CCSSCCSSCC--------TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CEEEeCCC-CcCccCccCC--------CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 35555553 4445554322 2355566666655555555554 56666666666666665543 355555555
Q ss_pred EEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCC
Q 005207 215 QLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKN 294 (709)
Q Consensus 215 ~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~ 294 (709)
.|+|++|......+..|.++++|++|+|++|.+....+..+..+++|+.|+|++|.++.+|..+..
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-------------- 157 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK-------------- 157 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC--------------
T ss_pred EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc--------------
Confidence 555555543333333355555555555555555555555555555555555555555555443200
Q ss_pred CccccccccCCCCCCEEEeeCcCCCccCCccccCCCc--cceeeccccccc
Q 005207 295 FARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVES--LEELDISETAVR 343 (709)
Q Consensus 295 ~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~--L~~L~L~~n~i~ 343 (709)
.+..+++|+.|+|++|.+....+..+..++. ++.|++++|.+.
T Consensus 158 ------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 158 ------DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ----------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ------CcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 0033555555555555544333334445554 366777777665
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=1.3e-14 Score=167.69 Aligned_cols=142 Identities=18% Similarity=0.104 Sum_probs=81.4
Q ss_pred CccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCC
Q 005207 181 PHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMED 260 (709)
Q Consensus 181 ~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~ 260 (709)
+..+..++.|+.|+|++|.+..+|..+..+++|+.|+|++|... .+|..++++++|++|+|++|.+. .+|..+..+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence 44455555566666666666666655556666666666665433 55555666666666666666655 44666666666
Q ss_pred CCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCC-CCCEEEeeCcCCCccCCc
Q 005207 261 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLK-SLKTLNLSGCCKLENVPD 324 (709)
Q Consensus 261 L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~-~L~~L~L~~~~~~~~~~~ 324 (709)
|++|+|++|.++.+|..++.+++|+.|+|++|.+.+.+|..+..+. .+..+++++|...+.+|.
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 6666666666666666666666666666666666666555543321 112245556655555543
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=4.9e-14 Score=162.96 Aligned_cols=190 Identities=15% Similarity=0.169 Sum_probs=96.5
Q ss_pred CCceEEEcccCCccccccccccccCCcEE-----EcCCCCCCCCCCCCCCCCCccEEeccCCccccccCccccccccccc
Q 005207 88 DKIVEFKMCYSRIEELWKGIKHLNMLKVM-----KLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIF 162 (709)
Q Consensus 88 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L-----~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~ 162 (709)
++++.|+|.+|.+...+..+.....|+.+ +++.|.+......+..+++|+.|+|++| .+..+|..++.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~------ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-QIFNISANIFK------ 245 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGG------
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCC-CCCCCChhhcC------
Confidence 34455555555555444333222222222 2223333322334667777777777776 34566665553
Q ss_pred CCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEee
Q 005207 163 VESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 242 (709)
Q Consensus 163 l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 242 (709)
+++|++|+|++|.+. .+|..++.+++|++|+|++|.++.+|..++.+++|+.|+|++|. +..+|..|+++++|++|+|
T Consensus 246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEEC
T ss_pred CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeC
Confidence 566777777777766 67777778888888888888888888888888888888888765 4577777888888888888
Q ss_pred eCCCCCCcCchhhccCCC-CCeeeccCccCcc-cCcccCCCCCCCEEeccCC
Q 005207 243 SGCSKLKKFPQIVTTMED-LSELNLDGTSITE-VPSSIELLPGLELLNLNDC 292 (709)
Q Consensus 243 s~~~~~~~~~~~~~~l~~-L~~L~L~~~~i~~-l~~~~~~l~~L~~L~L~~~ 292 (709)
++|.+.+..|..+..+.. +..++|.+|.+.. +| ..|+.|+++.|
T Consensus 324 ~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 324 EGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp TTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred CCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 888877777766654321 2235677776652 22 34555556554
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=5.7e-13 Score=124.80 Aligned_cols=105 Identities=21% Similarity=0.368 Sum_probs=56.0
Q ss_pred CccceeeccCCCcc--ccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeee
Q 005207 188 ECLQELLLDGTDIK--ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELN 265 (709)
Q Consensus 188 ~~L~~L~l~~~~i~--~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~ 265 (709)
++|+.|++++|.+. .+|..+..+++|+.|++++|... .+ ..+..+++|++|++++|.+....|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44455555555554 45544455555555555554422 22 3355566666666666665555555555566666666
Q ss_pred ccCccCcccC--cccCCCCCCCEEeccCCCC
Q 005207 266 LDGTSITEVP--SSIELLPGLELLNLNDCKN 294 (709)
Q Consensus 266 L~~~~i~~l~--~~~~~l~~L~~L~L~~~~~ 294 (709)
+++|.++.++ ..+..+++|+.|++++|.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcC
Confidence 6666665544 3444455555555554443
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=5.6e-13 Score=124.83 Aligned_cols=130 Identities=22% Similarity=0.280 Sum_probs=83.2
Q ss_pred CCccEEEccCCCCC-CcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEee
Q 005207 164 ESLKILILSGCLKL-RKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKL 242 (709)
Q Consensus 164 ~~L~~L~Ls~~~~~-~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 242 (709)
++|+.|++++|.+. +.+|..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.....+|..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 45556666666554 45555566666666666666666665 55666666666777666655545555555677777777
Q ss_pred eCCCCCCcC-chhhccCCCCCeeeccCccCcccCc----ccCCCCCCCEEeccCCCC
Q 005207 243 SGCSKLKKF-PQIVTTMEDLSELNLDGTSITEVPS----SIELLPGLELLNLNDCKN 294 (709)
Q Consensus 243 s~~~~~~~~-~~~~~~l~~L~~L~L~~~~i~~l~~----~~~~l~~L~~L~L~~~~~ 294 (709)
++|.+.... +..+..+++|++|++++|.+..++. .+..+++|+.|++++|..
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 776655432 2566677777777777777776665 566677777777766653
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.41 E-value=1.4e-12 Score=136.40 Aligned_cols=280 Identities=13% Similarity=0.023 Sum_probs=159.2
Q ss_pred CCCcceEEecCccccCc---ccccCcCccEEEeeCCCCC--CCCCcCCcCCceEEEcccCCccccc-ccccc--------
Q 005207 44 MTNLGLLKINNVQLLEG---LEYLSNKLRLLDWHRYPLK--SLPSNLQLDKIVEFKMCYSRIEELW-KGIKH-------- 109 (709)
Q Consensus 44 l~~L~~L~l~~~~l~~~---~~~l~~~L~~L~l~~~~l~--~lp~~~~l~~L~~L~Ls~n~i~~l~-~~~~~-------- 109 (709)
+.+|+.|.++++--..+ +.....+|+.|++++|.+. ..+... .+.++.+.+..+. +| ..|..
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~-~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g 99 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT-YPNGKFYIYMANF---VPAYAFSNVVNGVTKG 99 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS-SGGGCCEEECTTE---ECTTTTEEEETTEEEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccc-ccccccccccccc---cCHHHhcccccccccc
Confidence 34566677765321111 1221246777777776666 222211 1113444444442 33 23445
Q ss_pred ccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCC
Q 005207 110 LNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSME 188 (709)
Q Consensus 110 l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~ 188 (709)
+++|+.|+|.+ .+....+ .|.+|++|+.|++.+| .+..+++ ..|..+.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~-----------------------------~aF~~~~ 148 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLP-----------------------------EALADSV 148 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECT-----------------------------TSSCTTT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-Cccccch-----------------------------hhhcCCC
Confidence 66666666666 3333322 3666666666666664 2333333 3333333
Q ss_pred ccceeeccCCCc----ccc-CcccccCCCCc-EEecCCCCCCCcC-cccccCCccCcEEeeeCCCCCCcCchhhccCCCC
Q 005207 189 CLQELLLDGTDI----KEL-PLSIEHLFGLV-QLTLNDCKNLSSL-PVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDL 261 (709)
Q Consensus 189 ~L~~L~l~~~~i----~~l-p~~l~~l~~L~-~L~L~~~~~l~~l-p~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L 261 (709)
++..+....... ..+ ...+..+..|+ .+.+.....+... ...-....+++.+.+.+.-...........+++|
T Consensus 149 ~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L 228 (329)
T 3sb4_A 149 TAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNL 228 (329)
T ss_dssp CEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTC
T ss_pred ceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCC
Confidence 333333332111 111 11233444444 3444332221110 0011235667777777643222222223347899
Q ss_pred CeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCC-EEEeeCcCCCccCCccccCCCccceeeccc
Q 005207 262 SELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLK-TLNLSGCCKLENVPDTLGQVESLEELDISE 339 (709)
Q Consensus 262 ~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~-~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~ 339 (709)
+.++|++|.++.++. .|..+++|+.|++.++ +...-+..|.++++|+ .+++.+ .....-+..|.++++|+.|++++
T Consensus 229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp CEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECS
T ss_pred eEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCC
Confidence 999999999998886 4889999999999887 4455556788999999 999988 45455567889999999999999
Q ss_pred cccccCCc-ccccccCCcEEEc
Q 005207 340 TAVRRPPS-SVFLMKNLRTLSF 360 (709)
Q Consensus 340 n~i~~l~~-~~~~l~~L~~L~L 360 (709)
|.++.++. .+..+++|+.+..
T Consensus 307 n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 307 DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp SCCCEECTTTTCTTCCCCEEEC
T ss_pred CccCccchhhhcCCcchhhhcc
Confidence 99998876 4556889988763
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.40 E-value=8.8e-13 Score=138.03 Aligned_cols=260 Identities=13% Similarity=0.067 Sum_probs=155.3
Q ss_pred hhcC-CCCcceEEecCcccc--CcccccCcCccEEEeeCCCCCCCCCcC--C--------cCCceEEEcccCCcccccc-
Q 005207 40 AFSL-MTNLGLLKINNVQLL--EGLEYLSNKLRLLDWHRYPLKSLPSNL--Q--------LDKIVEFKMCYSRIEELWK- 105 (709)
Q Consensus 40 ~f~~-l~~L~~L~l~~~~l~--~~~~~l~~~L~~L~l~~~~l~~lp~~~--~--------l~~L~~L~Ls~n~i~~l~~- 105 (709)
.+.. +++|+.|++++|++. .+.......++.+.+..+ .+|... . +.+|+.|+|++ +++.+++
T Consensus 43 ~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~ 118 (329)
T 3sb4_A 43 HLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDA 118 (329)
T ss_dssp HHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTT
T ss_pred HHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHH
Confidence 3444 788999999999987 332222223455555555 566443 6 89999999999 9999985
Q ss_pred ccccccCCcEEEcCCCCCCCCCC-CCCCCCCccEEeccCCcc---ccccCcccccccccccCCCcc-EEEccCCCCCCcC
Q 005207 106 GIKHLNMLKVMKLSHSENLIKTP-DFTEAPNLEELYLEGCTK---LRKVHPSLLLHNKLIFVESLK-ILILSGCLKLRKF 180 (709)
Q Consensus 106 ~~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~~~~---l~~~~~~i~~l~~L~~l~~L~-~L~Ls~~~~~~~~ 180 (709)
.|..+++|+.|++++|.+....+ .|.++.++..+.+..... ...+... ....+..|+ .+.+..... +
T Consensus 119 aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~-----~f~~~~~L~~~i~~~~~~~---l 190 (329)
T 3sb4_A 119 AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF-----AFIEGEPLETTIQVGAMGK---L 190 (329)
T ss_dssp TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS-----CEEESCCCEEEEEECTTCC---H
T ss_pred HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccc-----ccccccccceeEEecCCCc---H
Confidence 59999999999999998766554 588888888887655211 1111110 011123333 333332111 1
Q ss_pred Ccc----ccCCCccceeeccCCCccccCccc-ccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhh
Q 005207 181 PHV----VGSMECLQELLLDGTDIKELPLSI-EHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIV 255 (709)
Q Consensus 181 ~~~----l~~l~~L~~L~l~~~~i~~lp~~l-~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~ 255 (709)
+.. --...++..+.+.++-...-...+ ..+++|+.|++.+|.....-+.+|.++++|+.+++.++ +....+..|
T Consensus 191 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF 269 (329)
T 3sb4_A 191 EDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVF 269 (329)
T ss_dssp HHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred HHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHh
Confidence 111 112344445554443222111111 23566677777665433323334666777777777665 444445667
Q ss_pred ccCCCCC-eeeccCccCcccC-cccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEe
Q 005207 256 TTMEDLS-ELNLDGTSITEVP-SSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNL 313 (709)
Q Consensus 256 ~~l~~L~-~L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L 313 (709)
.++++|+ .+++.+ .++.++ .+|..+++|+.+++.++.+...-+..|.++++|+.++.
T Consensus 270 ~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 270 SNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 7777777 777777 666664 45777777777777777666666667777777777753
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=3.8e-13 Score=123.22 Aligned_cols=128 Identities=21% Similarity=0.216 Sum_probs=97.5
Q ss_pred CccCcEEeeeCCCCC-CcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEE
Q 005207 234 FQCLRNLKLSGCSKL-KKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLN 312 (709)
Q Consensus 234 l~~L~~L~Ls~~~~~-~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~ 312 (709)
.++|+.|++++|.+. +.+|..+..+++|++|++++|.++.+ ..++.+++|+.|++++|.+.+.+|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 456777777777665 45666667777777777777777776 5677788888888888887776777777788888888
Q ss_pred eeCcCCCcc-CCccccCCCccceeeccccccccCCc----ccccccCCcEEEccC
Q 005207 313 LSGCCKLEN-VPDTLGQVESLEELDISETAVRRPPS----SVFLMKNLRTLSFSG 362 (709)
Q Consensus 313 L~~~~~~~~-~~~~l~~l~~L~~L~L~~n~i~~l~~----~~~~l~~L~~L~L~~ 362 (709)
+++|.+.+. .+..++.+++|+.|++++|.++.++. .+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888876653 34677888889999999998888776 567788999888763
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=6.3e-13 Score=121.77 Aligned_cols=122 Identities=21% Similarity=0.279 Sum_probs=55.4
Q ss_pred cceeeccCCCcc--ccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeecc
Q 005207 190 LQELLLDGTDIK--ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLD 267 (709)
Q Consensus 190 L~~L~l~~~~i~--~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~ 267 (709)
|+.|++++|.+. .+|..+..+++|+.|++++|.... + ..+..+++|++|++++|.+....|..+..+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 344444444433 333333444444444444433222 1 234445555555555555554455555555555555555
Q ss_pred CccCcccC--cccCCCCCCCEEeccCCCCCcccc---ccccCCCCCCEEEe
Q 005207 268 GTSITEVP--SSIELLPGLELLNLNDCKNFARVP---SSINGLKSLKTLNL 313 (709)
Q Consensus 268 ~~~i~~l~--~~~~~l~~L~~L~L~~~~~~~~l~---~~~~~l~~L~~L~L 313 (709)
+|.++.++ ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 55555433 344445555555555544333222 23444444444443
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=3.2e-12 Score=122.56 Aligned_cols=127 Identities=25% Similarity=0.237 Sum_probs=71.3
Q ss_pred ceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcc-cccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCc
Q 005207 191 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPV-AISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 269 (709)
Q Consensus 191 ~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~ 269 (709)
+.+++++++++++|..+.. +|+.|++++|......+. .+..+++|++|++++|.+.+..|..+.++++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4556666666666654432 556666665543322222 2555666666666666665555556666666666666666
Q ss_pred cCcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCC
Q 005207 270 SITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKL 319 (709)
Q Consensus 270 ~i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~ 319 (709)
.++.++.. +..+++|+.|++++|.+.+..|..+..+++|++|++++|++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 66654432 555566666666665555555555555555555555555544
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=9.6e-12 Score=119.16 Aligned_cols=128 Identities=23% Similarity=0.244 Sum_probs=87.4
Q ss_pred cEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcc--cccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeC
Q 005207 167 KILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLS--IEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSG 244 (709)
Q Consensus 167 ~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~--l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~ 244 (709)
++++++++.+ +.+|..+.. +|++|++++|.++.++.. +..+++|+.|++++|......|..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCc-CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3445555444 233433322 666677777777666543 66777777777777666655566677777888888888
Q ss_pred CCCCCcCchhhccCCCCCeeeccCccCccc-CcccCCCCCCCEEeccCCCCCcc
Q 005207 245 CSKLKKFPQIVTTMEDLSELNLDGTSITEV-PSSIELLPGLELLNLNDCKNFAR 297 (709)
Q Consensus 245 ~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L~~~~~~~~ 297 (709)
|.+....+..+.++++|++|+|++|.++.+ |..+..+++|+.|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 777777777777788888888888888755 55677888888888888876544
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=4.2e-12 Score=119.82 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=23.7
Q ss_pred CccEEEeeCCCCCCCCCcCCcC-CceEEEcccCCccccccccccccCCcEEEcCCCCC
Q 005207 67 KLRLLDWHRYPLKSLPSNLQLD-KIVEFKMCYSRIEELWKGIKHLNMLKVMKLSHSEN 123 (709)
Q Consensus 67 ~L~~L~l~~~~l~~lp~~~~l~-~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~~~~ 123 (709)
+|+.|++++|.++.+|....+. +|++|++++|+|+.+ ..+..+++|++|+|++|++
T Consensus 20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l 76 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI 76 (176)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCC
T ss_pred CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcc
Confidence 4444444444444443322222 444444444444443 3334444444444444433
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=4.3e-12 Score=119.77 Aligned_cols=131 Identities=19% Similarity=0.246 Sum_probs=86.3
Q ss_pred ccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCE
Q 005207 231 ISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKT 310 (709)
Q Consensus 231 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~ 310 (709)
+.++++|+.|++++|.+.. ++......++|++|++++|.++.+ ..+..+++|+.|++++|.+.+..+..+..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3345556666666665543 233333333677777777777666 45667777777777777665443344467777777
Q ss_pred EEeeCcCCCccCCc--cccCCCccceeeccccccccCCcc----cccccCCcEEEccCCC
Q 005207 311 LNLSGCCKLENVPD--TLGQVESLEELDISETAVRRPPSS----VFLMKNLRTLSFSGCN 364 (709)
Q Consensus 311 L~L~~~~~~~~~~~--~l~~l~~L~~L~L~~n~i~~l~~~----~~~l~~L~~L~L~~~~ 364 (709)
|++++|.+ +.+|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|.
T Consensus 93 L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 77777765 34444 667778888888888888877764 6778888888888776
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=2e-11 Score=117.02 Aligned_cols=122 Identities=21% Similarity=0.256 Sum_probs=49.9
Q ss_pred eeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccC
Q 005207 192 ELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSI 271 (709)
Q Consensus 192 ~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i 271 (709)
.++++++.++++|..+. .+|+.|++++|.. ..+|..+.++++|++|++++|.+....+..+.++++|++|+|++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 34444444444443322 2444444444322 23333344444444444444444443334444444444444444444
Q ss_pred cccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCc
Q 005207 272 TEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGC 316 (709)
Q Consensus 272 ~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~ 316 (709)
+.++. .+..+++|+.|++++|.+....+..+..+++|+.|++++|
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 43332 2334444444444444333222223333444444444433
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=3.5e-11 Score=113.58 Aligned_cols=130 Identities=22% Similarity=0.256 Sum_probs=72.0
Q ss_pred CCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccc
Q 005207 261 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340 (709)
Q Consensus 261 L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 340 (709)
.+.++++++++..+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 356667777777666433 356666666666655444444555566666666655544433333444455555555554
Q ss_pred ccccCCcccccccCCcEEEccCCCCCCCCCccccccccccccCccccccccCCCCCCCCCCCEEeccCCCCCCCCCCCCC
Q 005207 341 AVRRPPSSVFLMKNLRTLSFSGCNGPPSSASWHLHLPFNLMGKSSCLVALMLPSLSGLRSLTKLDLSDCGLGEGAIPSDI 420 (709)
Q Consensus 341 ~i~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~l~~L~~L~Ls~n~l~~~~~~~~l 420 (709)
.++.++... +..+++|+.|++++|++. +..+..+
T Consensus 87 ~l~~~~~~~---------------------------------------------~~~l~~L~~L~l~~N~l~-~~~~~~~ 120 (177)
T 2o6r_A 87 KLQSLPNGV---------------------------------------------FDKLTQLKELALDTNQLK-SVPDGIF 120 (177)
T ss_dssp CCCCCCTTT---------------------------------------------TTTCTTCCEEECCSSCCS-CCCTTTT
T ss_pred CccccCHHH---------------------------------------------hhCCcccCEEECcCCcce-EeCHHHh
Confidence 444333211 345556666666666664 2333345
Q ss_pred CCCCCCCEEEcCCCCCcc
Q 005207 421 GNLHSLNELYLSKNNFVT 438 (709)
Q Consensus 421 ~~l~~L~~L~L~~n~l~~ 438 (709)
..+++|+.|++++|++..
T Consensus 121 ~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 121 DRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCTTCCEEECCSSCBCC
T ss_pred cCCcccCEEEecCCCeec
Confidence 667777777777776663
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=4e-11 Score=114.85 Aligned_cols=125 Identities=21% Similarity=0.223 Sum_probs=98.6
Q ss_pred EEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCC
Q 005207 168 ILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSK 247 (709)
Q Consensus 168 ~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~ 247 (709)
+++++++.+. .+|..+ .++|++|++++|.++.+|..+..+++|+.|++++|......+..|.++++|++|+|++|.+
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4555555433 234333 2467888888888888888888888888888888776666666788899999999999988
Q ss_pred CCcCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCC
Q 005207 248 LKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNF 295 (709)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~ 295 (709)
....+..+..+++|++|+|++|.++.++. .+..+++|+.|++++|+..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88888888999999999999999998887 4788999999999998754
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=3e-11 Score=114.01 Aligned_cols=126 Identities=18% Similarity=0.170 Sum_probs=60.0
Q ss_pred ceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCcc
Q 005207 191 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 270 (709)
Q Consensus 191 ~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~ 270 (709)
+.+++++++++.+|..+. ++|+.|++++|......+..+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 455555555555554332 455555555544332222334455555555555555444444444555555555555555
Q ss_pred CcccCcc-cCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCC
Q 005207 271 ITEVPSS-IELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCK 318 (709)
Q Consensus 271 i~~l~~~-~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~ 318 (709)
++.++.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 5544432 34445555555555444332222334444444444444433
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.27 E-value=3.3e-10 Score=121.28 Aligned_cols=235 Identities=11% Similarity=0.101 Sum_probs=111.7
Q ss_pred cCccEEEeeCCCCCCCCCc-CCcCCceEEEcccCCcccccc-ccccccCCcEEEcCCCCCCCC-CCCCCCCCCccEEecc
Q 005207 66 NKLRLLDWHRYPLKSLPSN-LQLDKIVEFKMCYSRIEELWK-GIKHLNMLKVMKLSHSENLIK-TPDFTEAPNLEELYLE 142 (709)
Q Consensus 66 ~~L~~L~l~~~~l~~lp~~-~~l~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~-~~~~~~l~~L~~L~L~ 142 (709)
..++.+.+.. .++.++.. |.-.+|+.+.+..+ ++.++. .|.+ .+|+.+.+..+ +... ...|.+|++|+.+++.
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~~-l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPST-LEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTT-CCCCEEECCTT-CCEECSSTTTTCTTCCEEECT
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHHhcCC-CCceEEEeCCC-ccEehHHHhhCcccCCeeecC
Confidence 3444444432 24444432 22235666666654 665553 3444 35777766652 2222 2346677777777776
Q ss_pred CCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCC
Q 005207 143 GCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCK 222 (709)
Q Consensus 143 ~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~ 222 (709)
+| .+..++...+. ..+|+.+.+..+ +...-...|.++++|+.+.+..+ ++.++.....-.+|+.+.+..
T Consensus 189 ~n-~l~~I~~~aF~------~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~-- 257 (401)
T 4fdw_A 189 KT-KITKLPASTFV------YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPN-- 257 (401)
T ss_dssp TS-CCSEECTTTTT------TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEET--
T ss_pred CC-cceEechhhEe------ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCC--
Confidence 64 45555554443 235566666533 33333345666666666666542 444443322225566665532
Q ss_pred CCCcC-cccccCCccCcEEeeeCCCCC-----CcCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCC
Q 005207 223 NLSSL-PVAISSFQCLRNLKLSGCSKL-----KKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNF 295 (709)
Q Consensus 223 ~l~~l-p~~l~~l~~L~~L~Ls~~~~~-----~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~ 295 (709)
.+..+ ..+|.++++|+.+.+.++... ...+..|.++++|+.+.|.. .+..++. +|..+++|+.+.+.++ ..
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc
Confidence 12222 234555556666665554332 22234444555555555542 2443332 2444445555544332 22
Q ss_pred ccccccccCCCCCCEEEeeCcCC
Q 005207 296 ARVPSSINGLKSLKTLNLSGCCK 318 (709)
Q Consensus 296 ~~l~~~~~~l~~L~~L~L~~~~~ 318 (709)
..-...|.++ +|+.+++.++..
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSC
T ss_pred EEcHHhCCCC-CCCEEEEcCCCC
Confidence 2222334444 444444444433
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.23 E-value=6.1e-10 Score=119.21 Aligned_cols=242 Identities=9% Similarity=0.098 Sum_probs=121.9
Q ss_pred eeehhhhcCCCCcceEEecCcc--ccCcccccCcCccEEEeeCCCCCCCCCc-C-CcCCceEEEcccCCccccccccccc
Q 005207 35 HLSAKAFSLMTNLGLLKINNVQ--LLEGLEYLSNKLRLLDWHRYPLKSLPSN-L-QLDKIVEFKMCYSRIEELWKGIKHL 110 (709)
Q Consensus 35 ~l~~~~f~~l~~L~~L~l~~~~--l~~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~Ls~n~i~~l~~~~~~l 110 (709)
.|...+|.+. +|+.+.+.++- +....+.- .+|+.+.+.. .++.++.. | .+.+|+.+++++|+++.++.+.-..
T Consensus 126 ~I~~~aF~~~-~L~~i~l~~~i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~ 202 (401)
T 4fdw_A 126 SIPKDAFRNS-QIAKVVLNEGLKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVY 202 (401)
T ss_dssp EECTTTTTTC-CCSEEECCTTCCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTT
T ss_pred EehHhhcccC-CccEEEeCCCccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEee
Confidence 4555566653 56666654431 11111111 2456555554 45555532 2 5566666666666666655432224
Q ss_pred cCCcEEEcCCCCCCCC-CCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCccccCCCc
Q 005207 111 NMLKVMKLSHSENLIK-TPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHVVGSMEC 189 (709)
Q Consensus 111 ~~L~~L~Ls~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~ 189 (709)
.+|+.+.|..+ +... ...|.++++|+.+++..+ +..++... |.+ .+
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~a-----------------------------F~~-~~ 249 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEA-----------------------------FRE-SG 249 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTT-----------------------------TTT-CC
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCccccc-----------------------------ccc-CC
Confidence 56666666543 1111 224556666666665542 33333322 222 34
Q ss_pred cceeeccCCCccccC-cccccCCCCcEEecCCCCCC-----CcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCe
Q 005207 190 LQELLLDGTDIKELP-LSIEHLFGLVQLTLNDCKNL-----SSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSE 263 (709)
Q Consensus 190 L~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~~l-----~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~ 263 (709)
|+.+.+ .+.++.++ ..+.++.+|+.+++.++... ..-+.+|.++++|+.+.+.. .+.......|.++.+|+.
T Consensus 250 L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 250 ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCE
T ss_pred ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccE
Confidence 444444 22333332 23444555555555443221 11223456666666666663 344444456666677777
Q ss_pred eeccCccCcccC-cccCCCCCCCEEeccCCCCCccccccccCCC-CCCEEEeeCc
Q 005207 264 LNLDGTSITEVP-SSIELLPGLELLNLNDCKNFARVPSSINGLK-SLKTLNLSGC 316 (709)
Q Consensus 264 L~L~~~~i~~l~-~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~-~L~~L~L~~~ 316 (709)
+.|..+ ++.+. .+|..+ +|+.+.+.+|......+..+.+++ +++.|.+..+
T Consensus 328 l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 328 LTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp EEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred EEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 777443 55443 346666 777777777665554455566664 6777777653
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=1.6e-13 Score=132.41 Aligned_cols=132 Identities=16% Similarity=0.127 Sum_probs=82.8
Q ss_pred CCccEEEccCCCCCCcCCc------cccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccC
Q 005207 164 ESLKILILSGCLKLRKFPH------VVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCL 237 (709)
Q Consensus 164 ~~L~~L~Ls~~~~~~~~~~------~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L 237 (709)
..++.++++.+.+.+..|. .+..+++|++|++++|.++.+| .+..+++|+.|++++|.. ..+|..+..+++|
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L 95 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLI-KKIENLDAVADTL 95 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHC
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCc-ccccchhhcCCcC
Confidence 3344444444444444333 6777777777777777777777 777777777777777653 3566555556777
Q ss_pred cEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCc--ccCCCCCCCEEeccCCCCCcccc
Q 005207 238 RNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPS--SIELLPGLELLNLNDCKNFARVP 299 (709)
Q Consensus 238 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~--~~~~l~~L~~L~L~~~~~~~~l~ 299 (709)
++|++++|.+.. +| .+..+++|++|++++|.+..++. .+..+++|+.|++++|.+.+..|
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 777777776554 23 45666677777777777765543 45666666666666665544433
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.17 E-value=3.1e-09 Score=113.84 Aligned_cols=82 Identities=16% Similarity=0.115 Sum_probs=44.5
Q ss_pred eEeeehhhhcCCCCcceEEecCccccCcccccCcCccEEEeeCCCCCCCCC-cC-CcCCceEEEcccCCccccc-ccccc
Q 005207 33 EVHLSAKAFSLMTNLGLLKINNVQLLEGLEYLSNKLRLLDWHRYPLKSLPS-NL-QLDKIVEFKMCYSRIEELW-KGIKH 109 (709)
Q Consensus 33 ~~~l~~~~f~~l~~L~~L~l~~~~l~~~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~i~~l~-~~~~~ 109 (709)
...|...||.++.+|+.+.+..+ ++.++. .| .+.+|+.+++..+ ++.++ ..|..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~----------------------i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 115 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST----------------------VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSG 115 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT----------------------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC----------------------ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcc
Confidence 45577788888888888876432 112221 12 4566666666543 55554 34666
Q ss_pred ccCCcEEEcCCCCCCCCCCCCCCCCCcc
Q 005207 110 LNMLKVMKLSHSENLIKTPDFTEAPNLE 137 (709)
Q Consensus 110 l~~L~~L~Ls~~~~~~~~~~~~~l~~L~ 137 (709)
+.+|+.+.+..+-.......|.++..++
T Consensus 116 c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 116 CYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp CTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred cccchhhcccCceeeecceeeecccccc
Confidence 6666666555442222223455554433
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=1.2e-12 Score=126.23 Aligned_cols=113 Identities=21% Similarity=0.247 Sum_probs=54.5
Q ss_pred ccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCcccCcccCCC
Q 005207 202 ELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEVPSSIELL 281 (709)
Q Consensus 202 ~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l 281 (709)
.+|..+..+++|+.|++++|.. ..+| .+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++.+| .+..+
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l-~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l 114 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKL 114 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEE-SCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCC-cccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence 3444555666666666655432 2244 4555555555555555443 33444444455555555555555444 34444
Q ss_pred CCCCEEeccCCCCCcccc-ccccCCCCCCEEEeeCcCC
Q 005207 282 PGLELLNLNDCKNFARVP-SSINGLKSLKTLNLSGCCK 318 (709)
Q Consensus 282 ~~L~~L~L~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~ 318 (709)
++|+.|++++|.+....+ ..+..+++|++|++++|..
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 455555555544332111 2334444444444444433
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.11 E-value=6.7e-09 Score=111.28 Aligned_cols=318 Identities=12% Similarity=0.076 Sum_probs=156.9
Q ss_pred CCcceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCcc--ccCcccccCcCccEEEeeCCCCCCCCCc-CCcCCce
Q 005207 15 GSELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQ--LLEGLEYLSNKLRLLDWHRYPLKSLPSN-LQLDKIV 91 (709)
Q Consensus 15 g~~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~--l~~~~~~l~~~L~~L~l~~~~l~~lp~~-~~l~~L~ 91 (709)
+...++.|.+..+ ...|...||+++++|+.+++.++- +......-..+|+.+.+..+ ++.+... |.-..+.
T Consensus 69 ~c~~L~~i~lp~~-----i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 69 GCRKVTEIKIPST-----VREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TCTTEEEEECCTT-----CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred CCCCceEEEeCCC-----ccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 5567888877543 457888999999999999996541 22222222235554444322 3333322 2111222
Q ss_pred EEEcccCCccccc-cccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEE
Q 005207 92 EFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILI 170 (709)
Q Consensus 92 ~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~ 170 (709)
...+.. .+..+. ..|..+++|+.+.+..+........|.++.+|+.+.+..+ +..++...+ ..+..|+.+.
T Consensus 143 ~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F-----~~~~~L~~i~ 214 (394)
T 4fs7_A 143 EITIPE-GVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCF-----AECILLENME 214 (394)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTT-----TTCTTCCBCC
T ss_pred ccccCc-cccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC--ceEeCchhh-----ccccccceee
Confidence 222222 222333 4577777788887766533222345777777777777553 333333211 1133344444
Q ss_pred ccCCCCCCcCCccccCCCccceeeccCCCcccc-CcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCC
Q 005207 171 LSGCLKLRKFPHVVGSMECLQELLLDGTDIKEL-PLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLK 249 (709)
Q Consensus 171 Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~ 249 (709)
+..+.. .+.+.......|+.+.+.... ..+ ...+..+..|+.+.+..+ ....-...+..+..++.+......
T Consensus 215 ~~~~~~--~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~--- 287 (394)
T 4fs7_A 215 FPNSLY--YLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI--- 287 (394)
T ss_dssp CCTTCC--EECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---
T ss_pred cCCCce--EeehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee---
Confidence 333211 111222233455555554322 222 223445556666665542 122222335555666665554322
Q ss_pred cCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccC
Q 005207 250 KFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQ 328 (709)
Q Consensus 250 ~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~ 328 (709)
.....+..+.+|+.+.+..+ +..++. +|..+++|+.+.+.++ ....-...|.++.+|+.+.+..+ ....-..++.+
T Consensus 288 i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 11234455666666666543 444432 3566666666666532 22223345666666666666543 22223345666
Q ss_pred CCccceeeccccccccCCcccccccCCcE
Q 005207 329 VESLEELDISETAVRRPPSSVFLMKNLRT 357 (709)
Q Consensus 329 l~~L~~L~L~~n~i~~l~~~~~~l~~L~~ 357 (709)
+++|+.+++..+ +..+...+..+++|+.
T Consensus 365 C~~L~~i~lp~~-~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 365 CINLKKVELPKR-LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp CTTCCEEEEEGG-GGGGGGGBCTTCEEEE
T ss_pred CCCCCEEEECCC-CEEhhheecCCCCCcE
Confidence 666666666543 3333334444555544
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=1.1e-09 Score=102.46 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=66.4
Q ss_pred CCeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccc
Q 005207 261 LSELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340 (709)
Q Consensus 261 L~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 340 (709)
.+.++++++.++++|..+ .++|+.|++++|.+.+..|..+.++++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 345666666666666544 366666666666666665666666667777777766665555555666777777777777
Q ss_pred ccccCCcc-cccccCCcEEEccCCCC
Q 005207 341 AVRRPPSS-VFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 341 ~i~~l~~~-~~~l~~L~~L~L~~~~~ 365 (709)
.++.++.. +..+++|++|++++|..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 77766654 55667777777777663
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.02 E-value=1.2e-09 Score=102.53 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=67.0
Q ss_pred CeeeccCccCcccCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeeccccc
Q 005207 262 SELNLDGTSITEVPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISETA 341 (709)
Q Consensus 262 ~~L~L~~~~i~~l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n~ 341 (709)
+.++++++.+.++|..+. ++|+.|++++|.+.+..|..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666666666665443 666677777666666666666667777777777766555444455667777777777777
Q ss_pred cccCCcc-cccccCCcEEEccCCCC
Q 005207 342 VRRPPSS-VFLMKNLRTLSFSGCNG 365 (709)
Q Consensus 342 i~~l~~~-~~~l~~L~~L~L~~~~~ 365 (709)
++.+|.. +..+++|++|++++|..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred cceeCHHHhccccCCCEEEeCCCCc
Confidence 7766654 55677777777777763
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.02 E-value=1.2e-09 Score=102.10 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=47.8
Q ss_pred ceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCcc
Q 005207 191 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 270 (709)
Q Consensus 191 ~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~ 270 (709)
+.++++++.++.+|..+. .+|+.|++++|......|..+.++++|++|+|++|.+....+..+..+++|++|+|++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 455666666665554442 445555555544333334444445555555555554444333444444444444444444
Q ss_pred CcccCcc-cCCCCCCCEEeccCCC
Q 005207 271 ITEVPSS-IELLPGLELLNLNDCK 293 (709)
Q Consensus 271 i~~l~~~-~~~l~~L~~L~L~~~~ 293 (709)
++.++.. +..+++|+.|++++|+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 4444432 3444444444444443
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.01 E-value=1.4e-09 Score=102.21 Aligned_cols=100 Identities=15% Similarity=0.209 Sum_probs=43.8
Q ss_pred ceeeccCCCccccCcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCcc
Q 005207 191 QELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS 270 (709)
Q Consensus 191 ~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~ 270 (709)
+.++++++.+..+|..+. .+|+.|++++|......|..+.++++|++|+|++|.+....+..+..+++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 445555555555554432 444445544444333333344444444444444444433333333444444444444444
Q ss_pred CcccCcc-cCCCCCCCEEeccCC
Q 005207 271 ITEVPSS-IELLPGLELLNLNDC 292 (709)
Q Consensus 271 i~~l~~~-~~~l~~L~~L~L~~~ 292 (709)
+..+|.. +..+++|+.|++++|
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS
T ss_pred cceeCHHHhccccCCCEEEeCCC
Confidence 4444332 333344444444333
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.86 E-value=3.4e-07 Score=97.91 Aligned_cols=158 Identities=11% Similarity=0.150 Sum_probs=89.7
Q ss_pred eEeeehhhhcCCC-CcceEEecCc--cccCcccccCcCccEEEeeCCC---CCCCCCc-C-CcCCceEEEcccCCccccc
Q 005207 33 EVHLSAKAFSLMT-NLGLLKINNV--QLLEGLEYLSNKLRLLDWHRYP---LKSLPSN-L-QLDKIVEFKMCYSRIEELW 104 (709)
Q Consensus 33 ~~~l~~~~f~~l~-~L~~L~l~~~--~l~~~~~~l~~~L~~L~l~~~~---l~~lp~~-~-~l~~L~~L~Ls~n~i~~l~ 104 (709)
...|...||.+.+ .|+.+.+.+. .+...-+.-..+|+.+.+..+. ++.++.. | .+.+|+.+.+..+ ++.++
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~ 129 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID 129 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC
T ss_pred eeEcCHhhccCCCCcCEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh
Confidence 4567788999885 5898888553 1333222222578888877653 5566543 3 5677777776654 55555
Q ss_pred -cccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEccCCCCCCcCCcc
Q 005207 105 -KGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILILSGCLKLRKFPHV 183 (709)
Q Consensus 105 -~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~Ls~~~~~~~~~~~ 183 (709)
..+..+.+|+.+.+..+........|..+..|+.+.+.. .+..+....+.. ..|+.+.+.... ...-...
T Consensus 130 ~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~------~~l~~i~ip~~~-~~i~~~a 200 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG------TALTQIHIPAKV-TRIGTNA 200 (394)
T ss_dssp TTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT------CCCSEEEECTTC-CEECTTT
T ss_pred hhhhhhhcccccccccceeeeecccceecccccccccccc--eeeEeccccccc------cceeEEEECCcc-cccccch
Confidence 446777888888886553333334577788888877765 344444433321 235555554321 1112234
Q ss_pred ccCCCccceeeccCCCc
Q 005207 184 VGSMECLQELLLDGTDI 200 (709)
Q Consensus 184 l~~l~~L~~L~l~~~~i 200 (709)
+..+..+..........
T Consensus 201 f~~c~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 201 FSECFALSTITSDSESY 217 (394)
T ss_dssp TTTCTTCCEEEECCSSS
T ss_pred hhhccccceeccccccc
Confidence 44555555555444433
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.83 E-value=1.8e-10 Score=122.08 Aligned_cols=59 Identities=22% Similarity=0.200 Sum_probs=26.7
Q ss_pred CCccEEEccCCCCCCcCCcc----cc-CCCccceeeccCCCccc--cCcccccCCCCcEEecCCCC
Q 005207 164 ESLKILILSGCLKLRKFPHV----VG-SMECLQELLLDGTDIKE--LPLSIEHLFGLVQLTLNDCK 222 (709)
Q Consensus 164 ~~L~~L~Ls~~~~~~~~~~~----l~-~l~~L~~L~l~~~~i~~--lp~~l~~l~~L~~L~L~~~~ 222 (709)
++|+.|++++|.+....... +. ..++|++|++++|.+.. +......+.+|+.|+|++|.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~ 137 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS 137 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC
Confidence 45666666666554322221 22 12456666666665542 11112223345555555543
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.76 E-value=1.1e-09 Score=116.02 Aligned_cols=158 Identities=15% Similarity=0.112 Sum_probs=76.2
Q ss_pred CCccceeeccCCCccc-----cCccccc-CCCCcEEecCCCCCCCcCcccc-cCCccCcEEeeeCCCCCCcCchhh----
Q 005207 187 MECLQELLLDGTDIKE-----LPLSIEH-LFGLVQLTLNDCKNLSSLPVAI-SSFQCLRNLKLSGCSKLKKFPQIV---- 255 (709)
Q Consensus 187 l~~L~~L~l~~~~i~~-----lp~~l~~-l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~Ls~~~~~~~~~~~~---- 255 (709)
++.|+.|++++|.++. +...+.. ..+|+.|+|++|.....-...+ ..+++|++|+|++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3567777777777763 2222222 2567777777665432211111 224556666666665543322222
Q ss_pred -ccCCCCCeeeccCccCcc-----cCcccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCC
Q 005207 256 -TTMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQV 329 (709)
Q Consensus 256 -~~l~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l 329 (709)
...++|++|+|++|.++. ++..+...++|++|++++|.+..... ..++..+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~--------------------~~L~~~L~~~ 210 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL--------------------ELLAAQLDRN 210 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH--------------------HHHHHHGGGC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH--------------------HHHHHHHhcC
Confidence 123455555555555542 22233444445555555544322110 0122333444
Q ss_pred Cccceeecccccccc-----CCcccccccCCcEEEccCCC
Q 005207 330 ESLEELDISETAVRR-----PPSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 330 ~~L~~L~L~~n~i~~-----l~~~~~~l~~L~~L~L~~~~ 364 (709)
++|++|++++|.++. +...+...++|++|+|++|.
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 555555555555542 22333445667777777665
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.73 E-value=3e-08 Score=104.19 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=76.7
Q ss_pred eeeccCc-cCcccCcccCCCCCCCEEeccC-CCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecccc
Q 005207 263 ELNLDGT-SITEVPSSIELLPGLELLNLND-CKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDISET 340 (709)
Q Consensus 263 ~L~L~~~-~i~~l~~~~~~l~~L~~L~L~~-~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~n 340 (709)
.++++++ .++.+|. +..+++|+.|+|++ |.+.+..+..+.++++|+.|+|++|.+.+..|..+..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566666 6777777 77777778888875 6666655567777888888888888777777777788888888888888
Q ss_pred ccccCCcccccccCCcEEEccCCCCC
Q 005207 341 AVRRPPSSVFLMKNLRTLSFSGCNGP 366 (709)
Q Consensus 341 ~i~~l~~~~~~l~~L~~L~L~~~~~~ 366 (709)
.++.+|..++....|+.|++.+|...
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 88887776665445888888888743
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.72 E-value=2.8e-06 Score=90.15 Aligned_cols=292 Identities=13% Similarity=0.094 Sum_probs=134.1
Q ss_pred CcceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCcc--ccCcccccCcCccEEEeeCCCCCCCCCc-CCcCCceE
Q 005207 16 SELVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQ--LLEGLEYLSNKLRLLDWHRYPLKSLPSN-LQLDKIVE 92 (709)
Q Consensus 16 ~~~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~--l~~~~~~l~~~L~~L~l~~~~l~~lp~~-~~l~~L~~ 92 (709)
.++++.|.+... ...|...||.++.+|+.+.+.++- +....+.- .+|+.+.+.. .++.++.. |...+|+.
T Consensus 45 ~~~i~~v~ip~~-----vt~Ig~~aF~~C~~L~~I~lp~~v~~Ig~~aF~~-c~l~~i~~~~-~l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 45 RDRISEVRVNSG-----ITSIGEANFNSCYNMTKVTVASTVTSIGDGAFAD-TKLQSYTGME-RVKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGGCSEEEECTT-----EEEECTTTTTTCTTCCEEEECTTCCEECTTTTTT-CCCCEEEECT-TCCEECTTTTTTCCCSE
T ss_pred ccCCEEEEeCCC-----ccChHHHHhhCCCCCCEEEeCCcceEechhhhcC-CCCceEECCc-eeeEeccceeccCCccc
Confidence 356777777554 667888889999999988885431 22222222 2455555543 24455433 23346777
Q ss_pred EEcccCCccccccc-cccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccEEEc
Q 005207 93 FKMCYSRIEELWKG-IKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKILIL 171 (709)
Q Consensus 93 L~Ls~n~i~~l~~~-~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~L~L 171 (709)
+.+..+ ++.+... +.. .+|+.+.+..+-.......|..+.+++.+.+............+.. .
T Consensus 118 i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~-~------------- 181 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYN-SSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLY-N------------- 181 (379)
T ss_dssp EECCTT-CCEECTTTTTT-CCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEE-E-------------
T ss_pred ccCCCc-ccccccccccc-ceeeeeeccceeeccccchhcccccccccccccccceeecccceec-c-------------
Confidence 777654 3344332 333 2455555544422222334666667776666543211110000000 0
Q ss_pred cCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCcC-cccccCCccCcEEeeeCCCCCCc
Q 005207 172 SGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSSL-PVAISSFQCLRNLKLSGCSKLKK 250 (709)
Q Consensus 172 s~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~Ls~~~~~~~ 250 (709)
........+.....+..+.+...........+..+.+|+.+.+... +..+ ..++.++..|+.+.+..+ +...
T Consensus 182 ----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I 254 (379)
T 4h09_A 182 ----KNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSI 254 (379)
T ss_dssp ----TTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEE
T ss_pred ----cccceeccccccccccccccccceeEEeecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEe
Confidence 0000111122222333333222222222223334444444444321 1111 223444555555555442 2222
Q ss_pred CchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCC
Q 005207 251 FPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQV 329 (709)
Q Consensus 251 ~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l 329 (709)
....+.++.+|+.+.+..+ +..++. .|..+++|+.+.+.++.+...-...|.++.+|+.+.+..+ ....-..++.++
T Consensus 255 ~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 255 GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred Cccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence 3344555555665555432 333332 3555666666666554444344445566666666666432 112223345566
Q ss_pred Cccceeeccc
Q 005207 330 ESLEELDISE 339 (709)
Q Consensus 330 ~~L~~L~L~~ 339 (709)
.+|+.+.+..
T Consensus 333 ~~L~~i~ip~ 342 (379)
T 4h09_A 333 KALSTISYPK 342 (379)
T ss_dssp TTCCCCCCCT
T ss_pred CCCCEEEECC
Confidence 6666666543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=5e-08 Score=102.44 Aligned_cols=102 Identities=17% Similarity=0.063 Sum_probs=59.3
Q ss_pred eeeccCC-CccccCcccccCCCCcEEecCC-CCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCc
Q 005207 192 ELLLDGT-DIKELPLSIEHLFGLVQLTLND-CKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGT 269 (709)
Q Consensus 192 ~L~l~~~-~i~~lp~~l~~l~~L~~L~L~~-~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~ 269 (709)
.++++++ .++.+|. +..+++|+.|+|++ |......+..|.++++|+.|+|++|.+.+..|..+.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3455555 5666666 66666666666664 3333223345666667777777766666666666666666666666666
Q ss_pred cCcccCcccCCCCCCCEEeccCCCC
Q 005207 270 SITEVPSSIELLPGLELLNLNDCKN 294 (709)
Q Consensus 270 ~i~~l~~~~~~l~~L~~L~L~~~~~ 294 (709)
.+..+|........|+.|++.+|.+
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCc
Confidence 6666655432222255555555543
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.61 E-value=1.9e-06 Score=92.00 Aligned_cols=313 Identities=11% Similarity=0.102 Sum_probs=148.6
Q ss_pred ceEEEEeecCCCCcceEeeehhhhcCCCCcceEEecCcc------ccCcccccCcCccEEEeeCCCCCCCCCcC--CcCC
Q 005207 18 LVEGMIIDDYFFPVNEVHLSAKAFSLMTNLGLLKINNVQ------LLEGLEYLSNKLRLLDWHRYPLKSLPSNL--QLDK 89 (709)
Q Consensus 18 ~i~~i~ld~~~~~~~~~~l~~~~f~~l~~L~~L~l~~~~------l~~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~ 89 (709)
.++.|.+-.+ ...|...||.++++|+.+.+.++. +....+.-..+|+.+.+.. .++.++... .+.+
T Consensus 65 ~L~sI~iP~s-----vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~~aF~~c~~ 138 (394)
T 4gt6_A 65 VLTSVQIPDT-----VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEIDSEAFHHCEE 138 (394)
T ss_dssp CCCEEEECTT-----CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEECTTTTTTCTT
T ss_pred cCEEEEECCC-----eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceehhhhhhhhcc
Confidence 4777777554 567888999999999999997653 2222222224565554433 355555433 7889
Q ss_pred ceEEEcccCCccccc-cccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccCCccccccCcccccccccccCCCccE
Q 005207 90 IVEFKMCYSRIEELW-KGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEGCTKLRKVHPSLLLHNKLIFVESLKI 168 (709)
Q Consensus 90 L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~l~~L~~ 168 (709)
|+.+.+..+ ++.+. ..+..+.+|+.+.+..+-.......|.. .+|+.+.+... +..+.... ...+..++.
T Consensus 139 L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~-~~l~~i~ip~~--~~~i~~~a-----f~~c~~l~~ 209 (394)
T 4gt6_A 139 LDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSVTAIEERAFTG-TALTQIHIPAK--VTRIGTNA-----FSECFALST 209 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTT-CCCSEEEECTT--CCEECTTT-----TTTCTTCCE
T ss_pred cccccccce-eeeecccceecccccccccccceeeEeccccccc-cceeEEEECCc--ccccccch-----hhhccccce
Confidence 999999754 55555 4588899999999987632222234544 57888887652 22222211 122344555
Q ss_pred EEccCCCCCCcCCccccCCCccceeeccCCCccccCcccccCCCCcEEecCCCCCCCc-CcccccCCccCcEEeeeCCCC
Q 005207 169 LILSGCLKLRKFPHVVGSMECLQELLLDGTDIKELPLSIEHLFGLVQLTLNDCKNLSS-LPVAISSFQCLRNLKLSGCSK 247 (709)
Q Consensus 169 L~Ls~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~-lp~~l~~l~~L~~L~Ls~~~~ 247 (709)
...........-...+..........+.. .....+..+.+.. .+.. -..+|.++.+|+.+.+... .
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~-~ 276 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALIRY----------PSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDS-V 276 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEEEC----------CTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTT-C
T ss_pred ecccccccccccceeeccccccccccccc----------ccccccceEEcCC--cceEcccceeeecccccEEecccc-c
Confidence 55443322111000011000000000000 0001111111110 0000 0122444555555554332 1
Q ss_pred CCcCchhhccCCCCCeeeccCccCcccCc-ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccc
Q 005207 248 LKKFPQIVTTMEDLSELNLDGTSITEVPS-SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTL 326 (709)
Q Consensus 248 ~~~~~~~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l 326 (709)
.......+.++++|+.+.+. +.+..++. .|..+.+|+.+.+.++ ....-...|.+|.+|+.+.+..+ ....-...|
T Consensus 277 ~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF 353 (394)
T 4gt6_A 277 VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAF 353 (394)
T ss_dssp CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGG
T ss_pred ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHh
Confidence 22223344555555555554 23444432 3555666666666542 22222344566666666666432 222223456
Q ss_pred cCCCccceeeccccccccCCcccccccCCcEEEccCC
Q 005207 327 GQVESLEELDISETAVRRPPSSVFLMKNLRTLSFSGC 363 (709)
Q Consensus 327 ~~l~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~~ 363 (709)
.++.+|+.+++.++.... ..+....+|+.+.+..+
T Consensus 354 ~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 354 SNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTCTTCCEEEESSCHHHH--HTCBCCCCC--------
T ss_pred hCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCC
Confidence 666666666666654321 23344566666665543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=4.2e-08 Score=102.99 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=29.8
Q ss_pred CcccccCCCCcEEecCCCCCCCcCcccccCCccCcEEeeeCCCCCCcCchhhc--cCCCCCeeecc
Q 005207 204 PLSIEHLFGLVQLTLNDCKNLSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVT--TMEDLSELNLD 267 (709)
Q Consensus 204 p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~--~l~~L~~L~L~ 267 (709)
...+..+++|+.|++++|... .++. +. +++|++|++..|.+.......+. .+++|+.|+|+
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 334455566666666554222 2222 22 56666666665554433222222 45666666553
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.56 E-value=1.3e-05 Score=84.94 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=30.8
Q ss_pred ccCCCCCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCccCCccccCCCccceeecc
Q 005207 277 SIELLPGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDIS 338 (709)
Q Consensus 277 ~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~ 338 (709)
.+....+|+.+.+..+ ........+.++.+|+.+.+..+ ....-...+..+.+|+.+.+.
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~ 271 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFY 271 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccc
Confidence 3455556666665432 22222334556666776666543 222223445566667766654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.52 E-value=7.4e-08 Score=101.14 Aligned_cols=156 Identities=20% Similarity=0.218 Sum_probs=103.4
Q ss_pred ccccCCCCcEEecCCCCC---------CCcCcccccCCccCcEEeeeCCCCCCcCchhhccCCCCCeeeccCccCccc-C
Q 005207 206 SIEHLFGLVQLTLNDCKN---------LSSLPVAISSFQCLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTSITEV-P 275 (709)
Q Consensus 206 ~l~~l~~L~~L~L~~~~~---------l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~l-~ 275 (709)
++..+++|+.|.+.+... ...+...+..+++|+.|.+++|.... ++. + .+++|+.|+|..+.+..- .
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHH
Confidence 344555666666644211 12344556778999999999984332 232 3 378999999998887621 1
Q ss_pred ccc--CCCCCCCEEeccCC--CC-----Cccccccc--cCCCCCCEEEeeCcCCCccCCccc---cCCCccceeeccccc
Q 005207 276 SSI--ELLPGLELLNLNDC--KN-----FARVPSSI--NGLKSLKTLNLSGCCKLENVPDTL---GQVESLEELDISETA 341 (709)
Q Consensus 276 ~~~--~~l~~L~~L~L~~~--~~-----~~~l~~~~--~~l~~L~~L~L~~~~~~~~~~~~l---~~l~~L~~L~L~~n~ 341 (709)
..+ ..+|+|+.|+|+.+ .. ...+...+ ..+++|++|++.+|......+..+ ..+++|++|+|+.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 122 36899999998632 11 11111222 358999999999988764332222 357899999999999
Q ss_pred ccc-----CCcccccccCCcEEEccCCC
Q 005207 342 VRR-----PPSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 342 i~~-----l~~~~~~l~~L~~L~L~~~~ 364 (709)
+.. ++..+..+++|+.|++++|.
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 874 45555678999999999987
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.89 E-value=4.7e-06 Score=78.67 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=17.2
Q ss_pred ccCCCccceeeccCCCcc-----ccCcccccCCCCcEEecCCCC
Q 005207 184 VGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCK 222 (709)
Q Consensus 184 l~~l~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~~~ 222 (709)
+...++|++|++++|.+. .+...+...+.|++|+|++|.
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 334444555555555443 123333334444444444443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.84 E-value=5.6e-06 Score=78.12 Aligned_cols=114 Identities=13% Similarity=0.081 Sum_probs=53.8
Q ss_pred ccCCccCcEEeeeCC-CCCCc----CchhhccCCCCCeeeccCccCcc-----cCcccCCCCCCCEEeccCCCCCccccc
Q 005207 231 ISSFQCLRNLKLSGC-SKLKK----FPQIVTTMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDCKNFARVPS 300 (709)
Q Consensus 231 l~~l~~L~~L~Ls~~-~~~~~----~~~~~~~l~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~L~~~~~~~~l~~ 300 (709)
+...++|++|+|++| .+... +...+...++|++|+|++|.+.. +...+...+.|++|+|++|.+...-.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~- 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI- 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH-
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH-
Confidence 445566666666666 44322 22333444555556655555542 22223333445555555444332100
Q ss_pred cccCCCCCCEEEeeCcCCCccCCccccCCCccceeec--ccccccc-----CCcccccccCCcEEEccCCC
Q 005207 301 SINGLKSLKTLNLSGCCKLENVPDTLGQVESLEELDI--SETAVRR-----PPSSVFLMKNLRTLSFSGCN 364 (709)
Q Consensus 301 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L--~~n~i~~-----l~~~~~~l~~L~~L~L~~~~ 364 (709)
..+...+...++|++|++ ++|.+.. +...+...++|++|++++|.
T Consensus 111 -------------------~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 111 -------------------LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp -------------------HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred -------------------HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 012233444455555555 4555541 23333445666666666665
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.70 E-value=2.1e-05 Score=72.58 Aligned_cols=87 Identities=20% Similarity=0.300 Sum_probs=53.8
Q ss_pred CCCCEEeccCCCCCccccccccCCCCCCEEEeeCcCCCcc-CCccccCC----Cccceeeccccc-ccc-CCcccccccC
Q 005207 282 PGLELLNLNDCKNFARVPSSINGLKSLKTLNLSGCCKLEN-VPDTLGQV----ESLEELDISETA-VRR-PPSSVFLMKN 354 (709)
Q Consensus 282 ~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~~-~~~~l~~l----~~L~~L~L~~n~-i~~-l~~~~~~l~~ 354 (709)
.+|+.|++++|.+...--..+.++++|++|+|++|..++. --..+..+ ++|++|++++|. |+. --..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3567777777665544444456677777777777764432 22223332 467778887764 552 2234556888
Q ss_pred CcEEEccCCCCCCC
Q 005207 355 LRTLSFSGCNGPPS 368 (709)
Q Consensus 355 L~~L~L~~~~~~~~ 368 (709)
|++|++++|...+.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 99999999885544
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.67 E-value=2.8e-05 Score=71.76 Aligned_cols=86 Identities=10% Similarity=0.126 Sum_probs=42.0
Q ss_pred cCcEEeeeCCCCCCcCchhhccCCCCCeeeccCcc-Cccc-CcccCC----CCCCCEEeccCCCCC-ccccccccCCCCC
Q 005207 236 CLRNLKLSGCSKLKKFPQIVTTMEDLSELNLDGTS-ITEV-PSSIEL----LPGLELLNLNDCKNF-ARVPSSINGLKSL 308 (709)
Q Consensus 236 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~~~-i~~l-~~~~~~----l~~L~~L~L~~~~~~-~~l~~~~~~l~~L 308 (709)
.|+.|++++|.+....-..+.++++|++|+|++|. |++- -..+.. .++|++|+|++|..+ ..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555443333334445555555555542 3310 011222 235666666666532 2222334556777
Q ss_pred CEEEeeCcCCCcc
Q 005207 309 KTLNLSGCCKLEN 321 (709)
Q Consensus 309 ~~L~L~~~~~~~~ 321 (709)
++|++++|+.++.
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 7777777765543
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.64 E-value=7.6e-06 Score=81.43 Aligned_cols=63 Identities=24% Similarity=0.382 Sum_probs=31.5
Q ss_pred ccCCCCCeeeccCccCcccC---cccCCCCCCCEEeccCCCCCccccccccCCC--CCCEEEeeCcCCCc
Q 005207 256 TTMEDLSELNLDGTSITEVP---SSIELLPGLELLNLNDCKNFARVPSSINGLK--SLKTLNLSGCCKLE 320 (709)
Q Consensus 256 ~~l~~L~~L~L~~~~i~~l~---~~~~~l~~L~~L~L~~~~~~~~l~~~~~~l~--~L~~L~L~~~~~~~ 320 (709)
.++++|+.|+|++|.+..++ ..+..+++|+.|+|++|.+.+. ..+..++ +|++|++++|+..+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 44566666666666666433 3344555666666665554432 1122222 45555555554443
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.41 E-value=0.00011 Score=73.08 Aligned_cols=79 Identities=22% Similarity=0.250 Sum_probs=47.9
Q ss_pred CCccCcEEeeeCCCCCC--cCchhhccCCCCCeeeccCccCcccCcccCCCC--CCCEEeccCCCCCccccc-------c
Q 005207 233 SFQCLRNLKLSGCSKLK--KFPQIVTTMEDLSELNLDGTSITEVPSSIELLP--GLELLNLNDCKNFARVPS-------S 301 (709)
Q Consensus 233 ~l~~L~~L~Ls~~~~~~--~~~~~~~~l~~L~~L~L~~~~i~~l~~~~~~l~--~L~~L~L~~~~~~~~l~~-------~ 301 (709)
++++|+.|+|++|.+.. .++..+..+++|+.|+|++|.+..+. .+..+. +|+.|++++|++.+..|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 34556666666665554 33455566777777777777776552 222233 788888888877665442 2
Q ss_pred ccCCCCCCEEE
Q 005207 302 INGLKSLKTLN 312 (709)
Q Consensus 302 ~~~l~~L~~L~ 312 (709)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45667777665
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.67 E-value=0.015 Score=50.67 Aligned_cols=52 Identities=25% Similarity=0.333 Sum_probs=32.0
Q ss_pred EEEeeCCCCC--CCCCcCCcCCceEEEcccCCccccccc-cccccCCcEEEcCCCC
Q 005207 70 LLDWHRYPLK--SLPSNLQLDKIVEFKMCYSRIEELWKG-IKHLNMLKVMKLSHSE 122 (709)
Q Consensus 70 ~L~l~~~~l~--~lp~~~~l~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~Ls~~~ 122 (709)
.++.+++.++ .+|..+ ..+|++|+|++|+|+.++.+ |..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555666666 666543 24566777777777766643 5666666666666664
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.57 E-value=0.015 Score=50.81 Aligned_cols=54 Identities=15% Similarity=0.060 Sum_probs=47.2
Q ss_pred ceEEecCcccc--CcccccCcCccEEEeeCCCCCCCCCcC--CcCCceEEEcccCCcc
Q 005207 48 GLLKINNVQLL--EGLEYLSNKLRLLDWHRYPLKSLPSNL--QLDKIVEFKMCYSRIE 101 (709)
Q Consensus 48 ~~L~l~~~~l~--~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~i~ 101 (709)
..++.+++.+. ..+..+|.+|++|++++|.++.+|... .+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36788888887 666778899999999999999999876 7899999999999775
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.46 E-value=0.011 Score=55.30 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=34.7
Q ss_pred cccCCccCcEEeeeCCCCCCc----CchhhccCCCCCeeeccCccCcc-----cCcccCCCCCCCEEeccCC
Q 005207 230 AISSFQCLRNLKLSGCSKLKK----FPQIVTTMEDLSELNLDGTSITE-----VPSSIELLPGLELLNLNDC 292 (709)
Q Consensus 230 ~l~~l~~L~~L~Ls~~~~~~~----~~~~~~~l~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~L~~~ 292 (709)
++..-+.|+.|+|++|.+... +.+.+..-+.|++|+|+.|.|.. +...+..-+.|+.|+|++|
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 344455666666666655432 23344445667777777776662 3334555555666666654
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.36 E-value=0.011 Score=55.36 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=19.0
Q ss_pred cccCCCccceeeccCCCcc-----ccCcccccCCCCcEEecCCCC
Q 005207 183 VVGSMECLQELLLDGTDIK-----ELPLSIEHLFGLVQLTLNDCK 222 (709)
Q Consensus 183 ~l~~l~~L~~L~l~~~~i~-----~lp~~l~~l~~L~~L~L~~~~ 222 (709)
.+...+.|+.|+|++|.|. .+...+..-+.|+.|+|+.|.
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3444445555555555554 233334444455555555443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=34.53 E-value=39 Score=27.16 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=29.7
Q ss_pred Cccccc-cccccccCCcEEEcCCCCCCCCCCCCCCCCCccEEeccC
Q 005207 99 RIEELW-KGIKHLNMLKVMKLSHSENLIKTPDFTEAPNLEELYLEG 143 (709)
Q Consensus 99 ~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~ 143 (709)
.++.+. ..|..+.+|+.+.|-.+-.......|.+|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 455554 347777888888777663233334688888888888776
Done!