Query 005212
Match_columns 709
No_of_seqs 348 out of 2189
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 19:53:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 99.9 5.8E-26 1.3E-30 261.5 11.1 371 221-634 114-545 (775)
2 KOG1845 MORC family ATPases [C 99.9 1.5E-22 3.4E-27 233.4 8.2 319 292-659 1-383 (775)
3 COG0326 HtpG Molecular chapero 99.8 4E-21 8.6E-26 217.4 13.3 164 243-416 16-208 (623)
4 PRK05218 heat shock protein 90 99.8 2.7E-19 5.8E-24 206.6 22.8 165 242-415 14-207 (613)
5 PTZ00130 heat shock protein 90 99.8 2.3E-20 4.9E-25 217.5 13.6 198 201-416 41-270 (814)
6 PRK14083 HSP90 family protein; 99.8 7.5E-19 1.6E-23 201.9 22.3 298 242-625 11-330 (601)
7 PTZ00272 heat shock protein 83 99.8 1.3E-18 2.8E-23 202.2 14.9 164 242-416 13-205 (701)
8 PF13589 HATPase_c_3: Histidin 99.7 9.9E-18 2.2E-22 158.8 2.5 97 255-356 3-100 (137)
9 KOG0019 Molecular chaperone (H 99.6 4.9E-16 1.1E-20 173.8 10.2 151 254-417 59-235 (656)
10 KOG0020 Endoplasmic reticulum 99.6 5.8E-16 1.3E-20 169.0 8.3 151 254-418 97-282 (785)
11 COG0323 MutL DNA mismatch repa 99.5 2.8E-13 6.1E-18 157.4 17.7 109 236-353 4-118 (638)
12 PRK00095 mutL DNA mismatch rep 99.5 3E-12 6.5E-17 148.8 20.9 110 235-353 2-117 (617)
13 TIGR00585 mutl DNA mismatch re 99.3 8.5E-12 1.8E-16 133.6 12.0 140 235-387 2-148 (312)
14 PF07496 zf-CW: CW-type Zinc F 99.1 2.1E-11 4.5E-16 97.4 0.4 37 645-681 2-48 (50)
15 COG1389 DNA topoisomerase VI, 99.0 1.1E-09 2.3E-14 120.6 10.2 136 251-391 33-183 (538)
16 KOG1979 DNA mismatch repair pr 98.8 8.1E-09 1.8E-13 116.0 9.4 141 235-387 7-153 (694)
17 KOG1978 DNA mismatch repair pr 98.8 7E-09 1.5E-13 118.8 8.2 106 237-351 2-113 (672)
18 PRK04184 DNA topoisomerase VI 98.7 1E-07 2.2E-12 108.9 13.2 96 255-353 37-142 (535)
19 PRK14868 DNA topoisomerase VI 98.7 1.2E-07 2.6E-12 110.9 14.0 94 254-353 46-149 (795)
20 TIGR01052 top6b DNA topoisomer 98.6 2.8E-07 6.1E-12 104.4 11.4 97 253-354 27-133 (488)
21 PRK05559 DNA topoisomerase IV 98.5 5.8E-07 1.3E-11 105.2 11.3 123 253-389 36-176 (631)
22 TIGR01055 parE_Gneg DNA topois 98.4 9.4E-07 2E-11 103.3 9.8 121 255-389 31-169 (625)
23 PRK14939 gyrB DNA gyrase subun 98.3 4.4E-06 9.6E-11 99.2 12.1 120 255-389 38-174 (756)
24 PF02518 HATPase_c: Histidine 98.3 6.8E-07 1.5E-11 80.3 3.6 89 255-351 6-99 (111)
25 smart00433 TOP2c Topoisomerase 98.2 3.2E-06 7E-11 98.5 9.7 114 259-388 6-138 (594)
26 PRK05644 gyrB DNA gyrase subun 98.2 6.7E-06 1.5E-10 96.6 11.9 119 256-388 39-173 (638)
27 TIGR01059 gyrB DNA gyrase, B s 98.2 7.8E-06 1.7E-10 96.3 11.9 120 255-389 31-167 (654)
28 PRK14867 DNA topoisomerase VI 98.1 1.3E-05 2.8E-10 93.8 10.3 94 255-353 37-140 (659)
29 KOG1977 DNA mismatch repair pr 98.1 2.4E-06 5.2E-11 98.0 3.6 106 238-353 4-115 (1142)
30 TIGR01058 parE_Gpos DNA topois 97.7 0.0002 4.3E-09 84.3 10.7 117 258-389 38-172 (637)
31 COG0187 GyrB Type IIA topoisom 97.5 0.00037 8E-09 80.6 9.3 154 259-437 41-212 (635)
32 PLN03237 DNA topoisomerase 2; 97.4 0.00063 1.4E-08 85.3 10.3 85 256-349 79-179 (1465)
33 PLN03128 DNA topoisomerase 2; 97.3 0.00065 1.4E-08 84.2 9.5 85 256-349 54-154 (1135)
34 COG3290 CitA Signal transducti 97.3 0.00035 7.6E-09 79.7 6.6 86 253-350 426-519 (537)
35 cd00075 HATPase_c Histidine ki 97.2 0.00072 1.6E-08 57.0 6.2 86 256-350 2-93 (103)
36 PHA02569 39 DNA topoisomerase 97.2 0.001 2.2E-08 78.0 9.4 117 259-390 50-186 (602)
37 PRK10604 sensor protein RstB; 97.1 0.0012 2.7E-08 73.4 7.9 91 254-351 319-412 (433)
38 smart00387 HATPase_c Histidine 97.1 0.0013 2.7E-08 56.4 6.1 73 255-335 6-80 (111)
39 PRK10364 sensor protein ZraS; 97.0 0.0014 3.1E-08 73.0 7.8 84 254-350 348-436 (457)
40 PRK09470 cpxA two-component se 97.0 0.0015 3.2E-08 72.0 7.6 89 255-350 354-445 (461)
41 PRK09467 envZ osmolarity senso 97.0 0.0018 4E-08 71.0 7.7 88 254-350 331-421 (435)
42 PRK09303 adaptive-response sen 96.9 0.0025 5.5E-08 70.0 8.2 91 255-351 273-366 (380)
43 PRK11006 phoR phosphate regulo 96.8 0.0033 7E-08 69.7 7.7 90 254-350 317-411 (430)
44 TIGR01386 cztS_silS_copS heavy 96.8 0.0035 7.6E-08 68.7 7.8 88 254-348 353-445 (457)
45 TIGR02938 nifL_nitrog nitrogen 96.8 0.003 6.6E-08 69.2 7.4 86 255-350 388-482 (494)
46 PRK11086 sensory histidine kin 96.7 0.0037 7.9E-08 70.3 8.0 82 255-349 434-522 (542)
47 PTZ00109 DNA gyrase subunit b; 96.7 0.006 1.3E-07 73.7 9.4 117 259-389 134-307 (903)
48 PRK15053 dpiB sensor histidine 96.6 0.0041 8.9E-08 70.6 7.6 86 255-350 433-527 (545)
49 TIGR02966 phoR_proteo phosphat 96.6 0.006 1.3E-07 63.2 8.0 90 254-350 229-323 (333)
50 COG0642 BaeS Signal transducti 96.6 0.0037 8.1E-08 63.4 6.0 60 253-318 227-287 (336)
51 PRK11100 sensory histidine kin 96.5 0.0054 1.2E-07 67.4 7.4 89 254-350 368-461 (475)
52 PTZ00108 DNA topoisomerase 2-l 96.4 0.013 2.9E-07 74.0 10.7 121 256-389 59-203 (1388)
53 PRK10549 signal transduction h 96.4 0.0063 1.4E-07 67.3 7.2 89 255-350 353-446 (466)
54 TIGR02916 PEP_his_kin putative 96.3 0.0066 1.4E-07 71.8 7.1 83 255-350 580-668 (679)
55 PRK10755 sensor protein BasS/P 96.1 0.0089 1.9E-07 64.1 6.2 87 254-351 247-338 (356)
56 PRK10815 sensor protein PhoQ; 96.1 0.011 2.3E-07 67.5 6.9 85 255-350 379-466 (485)
57 PRK11091 aerobic respiration c 95.9 0.018 3.8E-07 68.9 7.6 92 255-351 399-494 (779)
58 PRK15347 two component system 95.8 0.019 4.1E-07 69.4 7.8 87 254-351 513-603 (921)
59 PRK10337 sensor protein QseC; 95.7 0.02 4.4E-07 63.2 6.7 84 255-350 353-439 (449)
60 PRK13837 two-component VirA-li 95.6 0.022 4.7E-07 69.1 7.2 90 255-351 561-664 (828)
61 PRK11360 sensory histidine kin 95.6 0.024 5.2E-07 63.7 6.8 84 255-351 501-590 (607)
62 COG4191 Signal transduction hi 95.5 0.019 4.2E-07 66.4 5.7 57 254-316 497-558 (603)
63 PRK11073 glnL nitrogen regulat 95.4 0.032 7E-07 59.4 6.8 91 254-351 237-337 (348)
64 PRK09835 sensor kinase CusS; P 95.3 0.04 8.7E-07 61.1 7.3 89 254-349 375-468 (482)
65 TIGR01925 spIIAB anti-sigma F 95.2 0.051 1.1E-06 50.8 6.8 82 254-349 39-125 (137)
66 PRK11466 hybrid sensory histid 95.2 0.041 8.9E-07 66.7 7.7 87 254-351 561-651 (914)
67 PRK10547 chemotaxis protein Ch 95.2 0.045 9.7E-07 65.2 7.6 88 256-351 387-512 (670)
68 TIGR03785 marine_sort_HK prote 95.1 0.05 1.1E-06 65.1 7.8 90 255-351 598-692 (703)
69 TIGR02956 TMAO_torS TMAO reduc 95.0 0.047 1E-06 66.5 7.5 88 254-351 579-672 (968)
70 PRK10490 sensor protein KdpD; 94.9 0.047 1E-06 67.1 7.1 89 254-351 778-871 (895)
71 PRK10841 hybrid sensory kinase 94.7 0.072 1.6E-06 65.7 7.8 90 255-351 563-656 (924)
72 PRK11107 hybrid sensory histid 94.5 0.09 1.9E-06 63.6 7.9 95 255-352 409-508 (919)
73 PRK10618 phosphotransfer inter 94.0 0.14 3.1E-06 63.1 8.2 93 255-352 566-662 (894)
74 PRK11644 sensory histidine kin 93.9 0.066 1.4E-06 61.4 4.8 45 255-305 411-456 (495)
75 COG4585 Signal transduction hi 93.5 0.092 2E-06 57.4 5.0 71 254-350 279-353 (365)
76 PRK09959 hybrid sensory histid 93.5 0.18 3.9E-06 63.3 8.1 94 254-351 828-925 (1197)
77 PRK04069 serine-protein kinase 93.4 0.12 2.7E-06 50.4 5.2 52 255-312 43-99 (161)
78 PRK03660 anti-sigma F factor; 93.3 0.32 6.8E-06 45.9 7.7 81 254-348 39-124 (146)
79 KOG0787 Dehydrogenase kinase [ 93.0 0.22 4.9E-06 55.2 6.9 74 255-334 261-349 (414)
80 PF13581 HATPase_c_2: Histidin 92.8 0.24 5.2E-06 45.5 5.9 78 254-346 31-113 (125)
81 PRK13557 histidine kinase; Pro 92.7 0.27 5.9E-06 55.1 7.3 92 255-351 278-383 (540)
82 COG0643 CheA Chemotaxis protei 92.6 0.24 5.2E-06 59.6 7.0 101 236-352 422-563 (716)
83 TIGR01924 rsbW_low_gc serine-p 92.4 0.32 6.9E-06 47.6 6.4 85 254-348 42-131 (159)
84 smart00249 PHD PHD zinc finger 91.7 0.17 3.7E-06 38.0 2.9 35 642-676 10-47 (47)
85 COG3850 NarQ Signal transducti 91.1 0.34 7.5E-06 55.9 5.7 75 255-352 482-558 (574)
86 COG2205 KdpD Osmosensitive K+ 90.6 0.72 1.6E-05 55.7 8.0 60 255-318 776-836 (890)
87 PF07744 SPOC: SPOC domain; I 89.9 0.18 4E-06 46.2 1.9 45 70-114 66-119 (119)
88 COG2972 Predicted signal trans 89.3 0.43 9.4E-06 54.2 4.8 54 254-311 350-407 (456)
89 COG2172 RsbW Anti-sigma regula 89.3 0.69 1.5E-05 45.1 5.5 87 251-351 37-129 (146)
90 PRK10600 nitrate/nitrite senso 89.3 0.38 8.2E-06 55.7 4.3 46 254-305 469-515 (569)
91 COG3920 Signal transduction hi 87.3 0.68 1.5E-05 48.0 4.2 45 256-305 124-174 (221)
92 PRK13560 hypothetical protein; 86.5 0.65 1.4E-05 54.8 4.1 44 257-305 714-762 (807)
93 COG5000 NtrY Signal transducti 85.9 0.91 2E-05 53.3 4.7 52 255-312 601-661 (712)
94 COG5002 VicK Signal transducti 85.8 0.73 1.6E-05 51.0 3.7 71 256-334 344-417 (459)
95 COG4192 Signal transduction hi 83.5 2 4.2E-05 49.2 5.8 60 254-318 564-626 (673)
96 PF00628 PHD: PHD-finger; Int 78.0 0.49 1.1E-05 37.3 -0.9 37 641-677 9-49 (51)
97 PRK10935 nitrate/nitrite senso 77.0 2.9 6.2E-05 47.8 4.6 46 255-305 472-518 (565)
98 PRK13559 hypothetical protein; 76.6 2.6 5.7E-05 45.3 3.9 47 255-305 268-319 (361)
99 COG4251 Bacteriophytochrome (l 75.2 3.7 8.1E-05 48.6 4.8 52 255-312 637-691 (750)
100 COG4564 Signal transduction hi 74.8 5.3 0.00011 44.2 5.5 71 260-353 365-439 (459)
101 PF00301 Rubredoxin: Rubredoxi 71.4 1.8 3.9E-05 34.6 0.8 25 658-682 22-46 (47)
102 COG3852 NtrB Signal transducti 65.7 11 0.00024 41.5 5.5 59 254-312 241-309 (363)
103 cd00730 rubredoxin Rubredoxin; 65.1 3.4 7.4E-05 33.4 1.2 24 660-683 24-47 (50)
104 KOG1973 Chromatin remodeling p 56.1 4.9 0.00011 43.2 0.9 35 645-679 231-268 (274)
105 COG3851 UhpB Signal transducti 53.2 16 0.00034 41.2 4.1 46 254-305 410-456 (497)
106 COG1773 Rubredoxin [Energy pro 52.0 8.9 0.00019 31.8 1.5 22 660-681 26-47 (55)
107 COG3275 LytS Putative regulato 37.7 42 0.0009 39.1 4.5 57 237-305 445-507 (557)
108 PRK13610 photosystem II reacti 37.2 15 0.00032 34.7 0.7 17 82-98 91-107 (113)
109 PF03912 Psb28: Psb28 protein; 36.9 13 0.00028 34.8 0.4 15 84-98 86-100 (108)
110 PLN00039 photosystem II reacti 36.5 16 0.00035 34.3 0.9 17 82-98 85-101 (111)
111 PRK13612 photosystem II reacti 35.4 17 0.00038 34.2 0.9 17 82-98 87-103 (113)
112 TIGR03047 PS_II_psb28 photosys 35.3 19 0.00041 33.8 1.1 17 82-98 84-100 (109)
113 PRK13611 photosystem II reacti 34.8 18 0.00039 33.7 0.9 17 82-98 80-96 (104)
114 CHL00128 psbW photosystem II p 34.2 19 0.0004 34.1 0.9 17 82-98 87-103 (113)
115 KOG0355 DNA topoisomerase type 34.1 82 0.0018 38.8 6.4 45 255-307 54-102 (842)
116 KOG0825 PHD Zn-finger protein 31.8 26 0.00056 42.7 1.8 40 645-684 229-271 (1134)
117 KOG4784 Uncharacterized conser 29.8 21 0.00047 39.5 0.7 27 650-677 117-143 (348)
118 PF14501 HATPase_c_5: GHKL dom 26.0 69 0.0015 28.4 3.1 42 254-301 5-51 (100)
119 PRK05452 anaerobic nitric oxid 25.3 37 0.00079 39.4 1.5 37 645-683 425-471 (479)
120 COG2865 Predicted transcriptio 25.2 84 0.0018 36.6 4.4 68 253-334 269-351 (467)
121 cd00594 KU Ku-core domain; inc 23.9 84 0.0018 33.1 3.8 67 49-116 87-161 (272)
122 smart00559 Ku78 Ku70 and Ku80 22.3 96 0.0021 29.8 3.5 66 50-116 35-109 (140)
123 PF06540 GMAP: Galanin message 20.1 91 0.002 26.5 2.4 34 68-102 11-44 (62)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=5.8e-26 Score=261.49 Aligned_cols=371 Identities=23% Similarity=0.285 Sum_probs=265.2
Q ss_pred CCCceeeecCCCCceeeecCHHHHHHhccccccCHHHHHHHHHhccccc---CCCccEEEEEeceeccCCCCcCEEEEE-
Q 005212 221 PEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA---KATKLEISIESIYFKKAGKDIPMLSII- 296 (709)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~p~~L~slstshi~~~f~AIaELIDNA~DA---~A~~I~I~I~~~~~~~~~~~~~~L~I~- 296 (709)
.++..+.....++..++.++|+|||+++|+| .|.++|++||+|||+|- +|+-+.|.-.. ...+.....++|.
T Consensus 114 ~a~~~~~~~~~G~~~~iivhpkflhsnatsh-k~a~~a~aeLldnalDEi~~~~tf~~vd~I~---p~~d~~i~a~~v~~ 189 (775)
T KOG1845|consen 114 LAELDVIIGKSGGTLHIIVHPKFLHSNATSH-KWAKGAIAELLDNALDEITNGATFVRVDYIN---PVMDIFIRALVVQL 189 (775)
T ss_pred cccccceeccCCceeEEEEehhhhcCCCccc-ccccChhhhhccccccccccccceEEeeeec---ccccccceeEEeec
Confidence 4445556666666799999999999999999 79999999999999997 45554433221 1112223444554
Q ss_pred ----eCCCCCCHHhHhhhhhcccCCCCCCCCCccccccceeeeecccccCeEEEEEeeC------CCCceeEEEeecc--
Q 005212 297 ----DDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA------DSRSIAFLSQSLN-- 364 (709)
Q Consensus 297 ----DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~------g~~svg~ls~tf~-- 364 (709)
|||.||.++-+...|..|.+.+. +-...+|+||+||++..|++|.+++|++|.. ..+++|+++++|.
T Consensus 190 ~~~s~~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~ 268 (775)
T KOG1845|consen 190 KRISDDGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRK 268 (775)
T ss_pred cceeccccccCHHHHHHHHHhhhhhhh-hhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeecc
Confidence 78999999999999999998775 3367899999999999999999999999943 3578999999995
Q ss_pred CCCccEEEcC----cccCCC---CcEEEEEeccchhhhhhhhhh-----hhhhcCCCcch--hHHHhh-------cc---
Q 005212 365 QGKDNLEIPI----VSYYRK---GQFMELDTVVQSEATAKYNLK-----SIKEFSPFNKY--LIGEKA-------GL--- 420 (709)
Q Consensus 365 eg~~~i~VPi----~~~~~~---Gt~I~l~~~~e~e~~~e~~L~-----~I~kySPF~s~--~I~e~~-------~~--- 420 (709)
++.++++||+ ...+.. -..|.. +.. ..+..++. .+++|+||.+. .+.+.. ..
T Consensus 269 t~~~d~iv~~~~i~~~~e~~~~~~~~i~~--~s~--~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~ 344 (775)
T KOG1845|consen 269 TGKRDFIVPMRLIKMDYEKSDQLWQGILY--KSG--VDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGH 344 (775)
T ss_pred ccCCceeEecchhhhhhhcccccccceee--ccc--cccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcc
Confidence 5678999998 443321 112222 111 12233333 39999999983 222200 01
Q ss_pred -cc-CCCCCcEEEEEeccCCC---CceeeeccCCCCCCCCCCccceeeecccccCCCCcccccCcchhhHHHHHHhhhcC
Q 005212 421 -FQ-DKCTGTQIYIWNLDQWG---SNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLV 495 (709)
Q Consensus 421 -~~-~~~tGT~III~NLrr~~---~~~eLdF~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~p~~ySLRaYlsiLYL~ 495 (709)
+. ...+||.+|+||+++|. +-.+++|+.+ +++|. -...++++.|.++||+.
T Consensus 345 ~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~--------~~~i~----------------~~~~~~~~s~~sil~~~ 400 (775)
T KOG1845|consen 345 QFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLD--------PHVIP----------------WTYCHSHLSEASILLLT 400 (775)
T ss_pred hhhhccCCCceeeeechhhhcccccceeeccccC--------ccccc----------------ccchhhhhhcccccchh
Confidence 22 25799999999997764 2377888654 24442 02456889999999975
Q ss_pred --CCeEEEEcCeeecccccccccCceeee--cccccc-------eEEEEEEceecccc-ceecceEEEEEcCeeee----
Q 005212 496 --PRMKIYVQGSLVRSRPLAKSLNKTCVE--TGIIMG-------KSAHLTLGRCQLEW-EQMNCGIFLYWHGRLIE---- 559 (709)
Q Consensus 496 --Prm~I~LnG~kV~~~~I~~~L~~~~v~--k~~i~~-------~~V~It~Gf~~~e~-~~~~~Gi~vY~nnRLIk---- 559 (709)
+++.+.+.|+.+.++.+......+... .+.... .......|+..... .....|+.|||++|||+
T Consensus 401 ~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~ 480 (775)
T KOG1845|consen 401 RRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCR 480 (775)
T ss_pred ccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcchhhccc
Confidence 899999999999999988766554321 111100 01112334443322 22456999999999999
Q ss_pred eEEeeccccccCCCCceEEEEEecCCccccCCCceeeccCCCCCCCchhHHHHHHHHHHHHHHHHhhcccccccc
Q 005212 560 AYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVV 634 (709)
Q Consensus 560 ~yeKVg~q~~~~~~grGVIGVVe~~~l~~p~~~~~~pthnKQdFe~t~~Y~~L~~~L~e~l~eYW~~~~~~~~~~ 634 (709)
++||.++. ....++++++++..++ . +++|++|+|+.+-.-..++....++++.||...++.+.+.
T Consensus 481 ~~~k~~n~--~~s~~~~~~~il~~n~-~-------~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~ 545 (775)
T KOG1845|consen 481 PFVKIDNA--TGSLGQAVIPILVGNF-V-------ETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEA 545 (775)
T ss_pred ceeeecCC--Cccccccccceecccc-c-------ccCCCccccccccccccchhhhhhcccccccccccccCcc
Confidence 89998874 4568999999999984 3 3589999999999889999999999999998888777654
No 2
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.5e-22 Score=233.39 Aligned_cols=319 Identities=21% Similarity=0.321 Sum_probs=226.4
Q ss_pred EEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccC--CCcc
Q 005212 292 MLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ--GKDN 369 (709)
Q Consensus 292 ~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~e--g~~~ 369 (709)
+|++.|||.||+++++..+..|+. ....+|+||+|+|+++|++|+++.++|+..+.+++++++++|++ ..+.
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~------~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~~~~s~~~~sqt~~e~~~~~~ 74 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAV------GLYGIGDYGNGLKSGSMRIGKDFILFTKKESTMSCLFLSQTFHESEADDA 74 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhcc------cccccccccCcccccccccCcccceeeccccccceeeeeccccccccccc
Confidence 478999999999999999988833 46789999999999999999999999999999999999999964 4678
Q ss_pred EEEcCcccCCCCcEEEEEeccchhhhhhhhhhhhhhcCCCcc--hhHHHhhccccCCCCCcEEEEEeccCC-CCceeeec
Q 005212 370 LEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNK--YLIGEKAGLFQDKCTGTQIYIWNLDQW-GSNYCLEW 446 (709)
Q Consensus 370 i~VPi~~~~~~Gt~I~l~~~~e~e~~~e~~L~~I~kySPF~s--~~I~e~~~~~~~~~tGT~III~NLrr~-~~~~eLdF 446 (709)
++||+++|+.++..+.. .....++++|+.||+|.. +.+.++..... ...||.+||.|+++. ++.++++|
T Consensus 75 vvvP~~t~~~~~~~~~~-------~k~~~~l~~~~c~sfwKag~~~~a~~~~~~~-~~G~~~~iivhpkflhsnatshk~ 146 (775)
T KOG1845|consen 75 VVVPCPTFNPRTREIVT-------EKFAFSLEAIYCRSFWKAGDYLLAELDVIIG-KSGGTLHIIVHPKFLHSNATSHKW 146 (775)
T ss_pred ceecccccccccccccc-------cccccccchhhhcCcccccchhcccccceec-cCCceeEEEEehhhhcCCCccccc
Confidence 89999999998877643 123457889999999997 33333322222 234589999888886 46688888
Q ss_pred cCCCCCCCCCCccceeeecccccCCCCcccccCcchhhHHHHHHhhhcCCCeEEEEcCeeecccccccccC--ceeee--
Q 005212 447 DNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLN--KTCVE-- 522 (709)
Q Consensus 447 ~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~p~~ySLRaYlsiLYL~Prm~I~LnG~kV~~~~I~~~L~--~~~v~-- 522 (709)
..| ..||+|+++- +.++-. +.|+.++|++|+|.|++++..|+++.+..+-. ++++.
T Consensus 147 a~~--------a~aeLldnal---------DEi~~~---~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~ 206 (775)
T KOG1845|consen 147 AKG--------AIAELLDNAL---------DEITNG---ATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRK 206 (775)
T ss_pred ccC--------hhhhhccccc---------cccccc---cceEEeeeecccccccceeEEeeccceeccccccCHHHHHH
Confidence 776 4788887541 223322 34599999999999999999999876443211 01100
Q ss_pred ----------c---------cccc------c-eEEE-------------EEEceecc--ccceecceEEEEEcCeeeeeE
Q 005212 523 ----------T---------GIIM------G-KSAH-------------LTLGRCQL--EWEQMNCGIFLYWHGRLIEAY 561 (709)
Q Consensus 523 ----------k---------~~i~------~-~~V~-------------It~Gf~~~--e~~~~~~Gi~vY~nnRLIk~y 561 (709)
+ ..+. + ..+. -.+|+..- -.++. +|.++|-+ |||+++
T Consensus 207 ~m~l~~~~k~e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t~-~~d~iv~~-~~i~~~ 284 (775)
T KOG1845|consen 207 CMSLGYSSKKEANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKTG-KRDFIVPM-RLIKMD 284 (775)
T ss_pred HHHhhhhhhhhhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeecccc-CCceeEec-chhhhh
Confidence 0 0000 0 0000 01221110 01334 88999999 999999
Q ss_pred EeeccccccCC-CCceEEEEEecCCccccCCCceeeccCCCCCCCchhHHHHHHHHHHHHHHHHhhccccccccc-----
Q 005212 562 KRVGGMIHNGD-TGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVK----- 635 (709)
Q Consensus 562 eKVg~q~~~~~-~grGVIGVVe~~~l~~p~~~~~~pthnKQdFe~t~~Y~~L~~~L~e~l~eYW~~~~~~~~~~~----- 635 (709)
.+++.++.... -+-|+.|.++++. -+=++|-.-+.|..++..|++.+.+||+.. ..+++..
T Consensus 285 ~e~~~~~~~~i~~~s~~~~~~n~~i------------~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~-~ef~~~~~~~~~ 351 (775)
T KOG1845|consen 285 YEKSDQLWQGILYKSGVDWAVNLEI------------EVTERFLKWSPYSHLLDLLGQNSVQYSKDF-PEFGHQFNIMNK 351 (775)
T ss_pred hhcccccccceeeccccccceeeee------------HHHHHHhhcCccccHHHHhhhhhhhhcccc-chhcchhhhccC
Confidence 88888864433 3458888887753 333478888999999999999999999762 2222210
Q ss_pred ---CCCcC-----CCCCceeeCccccccccCC
Q 005212 636 ---DGALY-----KPDQEWVQCNKCRKWRMLD 659 (709)
Q Consensus 636 ---~~~~~-----~~~~~wvQCd~C~KWR~Lp 659 (709)
..+.| ..+....|||.|++|+.+|
T Consensus 352 ~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~ 383 (775)
T KOG1845|consen 352 PGTDVIIYNLRRWKGDEGILELDFDLDPHVIP 383 (775)
T ss_pred CCceeeeechhhhcccccceeeccccCccccc
Confidence 11223 3467899999999999887
No 3
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4e-21 Score=217.39 Aligned_cols=164 Identities=25% Similarity=0.340 Sum_probs=129.5
Q ss_pred HHHHhccccccCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHh
Q 005212 243 YLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 306 (709)
Q Consensus 243 ~L~slstshi~~~f~AIaELIDNA~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee 306 (709)
.|+.+..+.|+...-.|+|||+||.||.. ..+.|.|.. ++++..|+|.|||+|||++|
T Consensus 16 ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~------Dk~~kTLtI~DNGIGMT~~E 89 (623)
T COG0326 16 LLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISF------DKDNKTLTISDNGIGMTKDE 89 (623)
T ss_pred HHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEE------cccCCEEEEEeCCCCCCHHH
Confidence 44555666677777779999999999942 245666653 45678999999999999999
Q ss_pred Hhhhhh-cccCCC--------CC-CCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEcCcc
Q 005212 307 VVRMTY-FGHKQP--------DA-DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS 376 (709)
Q Consensus 307 L~~~l~-fG~s~k--------~~-~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VPi~~ 376 (709)
+++.++ ++.|.. .. ++...||||||||+||+| ++++|+|+||+.+..... .|.+ .|.++++|....
T Consensus 90 v~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~~~~~-~W~S--~g~g~ytv~~~~ 165 (623)
T COG0326 90 VIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGEDEAY-HWES--DGEGEYTVEDID 165 (623)
T ss_pred HHHHHHHhhhccHHHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCCCcce-EEEE--cCCCceEEeecc
Confidence 999764 444321 11 357899999999999988 999999999999865444 7776 577788888777
Q ss_pred cCCC-CcEEEEEeccc-hhhhhhhhhhh-hhhcCCCcchhHHH
Q 005212 377 YYRK-GQFMELDTVVQ-SEATAKYNLKS-IKEFSPFNKYLIGE 416 (709)
Q Consensus 377 ~~~~-Gt~I~l~~~~e-~e~~~e~~L~~-I~kySPF~s~~I~e 416 (709)
.+.+ ||+|+|+++++ .+++.+|.++. |.|||.|..+||..
T Consensus 166 ~~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~ 208 (623)
T COG0326 166 KEPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYI 208 (623)
T ss_pred CCCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEE
Confidence 7774 99999999875 47888999855 99999999998863
No 4
>PRK05218 heat shock protein 90; Provisional
Probab=99.83 E-value=2.7e-19 Score=206.64 Aligned_cols=165 Identities=25% Similarity=0.349 Sum_probs=121.9
Q ss_pred HHHHHhccccccCHHHHHHHHHhcccccC----------------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005212 242 SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (709)
Q Consensus 242 ~~L~slstshi~~~f~AIaELIDNA~DA~----------------A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (709)
+.|..++.+.|+++..+|+|||+||+||. +....|.|.. +.+...|.|.|||+||+.+
T Consensus 14 ~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~------d~~~~~i~I~DnG~GMt~e 87 (613)
T PRK05218 14 QLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISF------DKEARTLTISDNGIGMTRE 87 (613)
T ss_pred HHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEE------cCCCCeEEEEECCCCCCHH
Confidence 45566677888999999999999999993 3445555542 2234579999999999999
Q ss_pred hHhhhh-hcccCCCC----------CCCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEcC
Q 005212 306 DVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI 374 (709)
Q Consensus 306 eL~~~l-~fG~s~k~----------~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VPi 374 (709)
++.+.+ ..|+|.+. ..+...||+||+||+|+ |.+|++++|.||+.+....|+.|.+ ++...+.|-.
T Consensus 88 el~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~-f~va~~v~V~Sr~~~~~~~~~~w~~--~g~~~~~i~~ 164 (613)
T PRK05218 88 EVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSA-FMVADKVTVITRSAGPAAEAVRWES--DGEGEYTIEE 164 (613)
T ss_pred HHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhh-hhccCEEEEEEcCCCCCCceEEEEE--eCCceeEEeE
Confidence 999865 56665321 12467899999999874 5599999999999774456788876 4444555533
Q ss_pred cccCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005212 375 VSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (709)
Q Consensus 375 ~~~~~~Gt~I~l~~~~e~-e~~~e~~L~~-I~kySPF~s~~I~ 415 (709)
..-..+||+|+++++.+. ++.+.+.++. |.+||.|..+||.
T Consensus 165 ~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~ 207 (613)
T PRK05218 165 IEKEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIK 207 (613)
T ss_pred CCCCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEE
Confidence 333368999999998764 5566666655 9999999887764
No 5
>PTZ00130 heat shock protein 90; Provisional
Probab=99.83 E-value=2.3e-20 Score=217.49 Aligned_cols=198 Identities=23% Similarity=0.321 Sum_probs=145.1
Q ss_pred CCCccccCCCCCcccccCCCCCCceeeecCCCCceeeecCH-HHHHHhccccccCHHHHHHHHHhcccccCC--------
Q 005212 201 FSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA-------- 271 (709)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~p-~~L~slstshi~~~f~AIaELIDNA~DA~A-------- 271 (709)
-+|.|-.|.-|-+.|++....-. ...+..|.+.- +.|+-++.+.|+++..+|+|||+||+||.+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~-------~~e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt 113 (814)
T PTZ00130 41 EKEEVKKDRDNIPEIEDGEKPTS-------GIEQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLS 113 (814)
T ss_pred CcchhhcccccCcccccCCCCCc-------ccceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcC
Confidence 34666777777776766543211 11223355544 455566778888888999999999999974
Q ss_pred --------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhh-hcccCCCC---------CCCCCcccccccee
Q 005212 272 --------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHKQPD---------ADDPNRIGRFGVGF 333 (709)
Q Consensus 272 --------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l-~fG~s~k~---------~~~~~~IG~fGiGf 333 (709)
..+.|.|.. +.....|+|.|||+|||.+++.+.+ ++|+|... ..+...||||||||
T Consensus 114 ~~~~~~~~~~~~I~I~~------D~~~~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGF 187 (814)
T PTZ00130 114 DESVLGEEKKLEIRISA------NKEKNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGF 187 (814)
T ss_pred CchhcCCCCCceEEEEE------CCCCCEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccch
Confidence 356777753 3456799999999999999998865 46655311 12467999999999
Q ss_pred eeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEcCcc---cCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCC
Q 005212 334 KTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSP 408 (709)
Q Consensus 334 KsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VPi~~---~~~~Gt~I~l~~~~e~-e~~~e~~L~~-I~kySP 408 (709)
+||+| +|++|+|.||+.+. .++.|.+ .+...+.|-..+ -..+||+|+|+++++. ++...+.++. |.+||.
T Consensus 188 YSaFm-VAdkV~V~Trs~~~--~~~~W~s--~g~g~y~I~e~~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~ 262 (814)
T PTZ00130 188 YSAFL-VADKVIVYTKNNND--EQYIWES--TADAKFTIYKDPRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQ 262 (814)
T ss_pred hheee-ecCEEEEEEcCCCC--ceEEEEE--CCCCcEEEEECCCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhc
Confidence 99887 99999999998764 4688877 455566664432 2368999999998765 6778888855 999999
Q ss_pred CcchhHHH
Q 005212 409 FNKYLIGE 416 (709)
Q Consensus 409 F~s~~I~e 416 (709)
|..+||..
T Consensus 263 fI~~PI~l 270 (814)
T PTZ00130 263 FIQYPIYL 270 (814)
T ss_pred cCCCCEEE
Confidence 99999863
No 6
>PRK14083 HSP90 family protein; Provisional
Probab=99.82 E-value=7.5e-19 Score=201.85 Aligned_cols=298 Identities=15% Similarity=0.161 Sum_probs=188.0
Q ss_pred HHHHHhccccccCHHHHHHHHHhcccccCCC----------ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhh-
Q 005212 242 SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRM- 310 (709)
Q Consensus 242 ~~L~slstshi~~~f~AIaELIDNA~DA~A~----------~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~- 310 (709)
..|+.++.+.|+++..+|+|||+||+||.+. .|.|.+. +.+...|+|.|||.||+.+++.+.
T Consensus 11 ~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-------d~~~~~l~I~DnGiGmt~eel~~~l 83 (601)
T PRK14083 11 GVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELT-------DAGGGTLIVEDNGIGLTEEEVHEFL 83 (601)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-------cCCCcEEEEEeCCCCCCHHHHHHHH
Confidence 4556668778899999999999999999764 4555441 124678999999999999999986
Q ss_pred hhcccCCCCC-----CCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEcC--cccCCCCcE
Q 005212 311 TYFGHKQPDA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI--VSYYRKGQF 383 (709)
Q Consensus 311 l~fG~s~k~~-----~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VPi--~~~~~~Gt~ 383 (709)
..+|.|.+.. .+...||+|||||+|++| +|+++.|.||+.+. ..++.|.+..+ ..+.|.. ..-..+||+
T Consensus 84 ~~ig~S~k~~~~~~~~~~~~IG~FGIGf~S~F~-vad~v~V~Tr~~~~-~~~~~W~~~~~--g~y~i~~~~~~~~~~GT~ 159 (601)
T PRK14083 84 ATIGRSSKRDENLGFARNDFLGQFGIGLLSCFL-VADEIVVVSRSAKD-GPAVEWRGKAD--GTYSVRKLETERAEPGTT 159 (601)
T ss_pred hhhccchhhhhhhcccccccccccccceEEEEE-ecCEEEEEeccCCC-CceEEEEECCC--CceEEEeCCCCCCCCCCE
Confidence 4688876633 135689999999988666 99999999999752 46788877433 3455543 123358999
Q ss_pred EEEEeccch-hhhhhhhhh-hhhhcCCCcchhHHHhhccccCCCCCcEEEEEeccCCCCceeeeccCCCCCCCCCCccce
Q 005212 384 MELDTVVQS-EATAKYNLK-SIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDI 461 (709)
Q Consensus 384 I~l~~~~e~-e~~~e~~L~-~I~kySPF~s~~I~e~~~~~~~~~tGT~III~NLrr~~~~~eLdF~~d~~~~~~~~~~DI 461 (709)
|+++++++. ++..++.++ +|.+||.|..+||.. .|+...|- . ...-|..+ +.+|
T Consensus 160 I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l---------~~~~~~iN---~----~~~lW~~~--------~~ei 215 (601)
T PRK14083 160 VYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRV---------EGEKGGVN---E----TPPPWTRD--------YPDP 215 (601)
T ss_pred EEEEecCchhhhccHHHHHHHHHHHhccCCCCccc---------CCceeeec---C----CCCCccCC--------cccc
Confidence 999997654 455556664 499999999988863 12211110 0 00111111 0121
Q ss_pred eeecccccCCCCcccccCcchhhHHHHHHhhhc-CCCeEEEEcCeeecccccccccCceeeecccccceEEEEEEceecc
Q 005212 462 LIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFL-VPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQL 540 (709)
Q Consensus 462 ~i~~~~~~~~~~q~~~~~p~~ySLRaYlsiLYL-~Prm~I~LnG~kV~~~~I~~~L~~~~v~k~~i~~~~V~It~Gf~~~ 540 (709)
- ..+.-..+|..-+|= +|-..|.++-.- ... +.+-..++....
T Consensus 216 t-----------------~~~eey~~Fyk~~~~~~Pl~~ih~~~e~---~~~----------------~~~Ly~iP~~~~ 259 (601)
T PRK14083 216 E-----------------TRREALLAYGEELLGFTPLDVIPLDVPS---GGL----------------EGVAYVLPYAVS 259 (601)
T ss_pred C-----------------ccHHHHHHHHHHhcCCCchheeeecccc---hhh----------------eEEEEecCCCCC
Confidence 0 011123455555542 465556555221 000 111111121110
Q ss_pred ccceecceEEEEEcCeeeee-EEeeccccccCCCCceEEEEEecCCccccCCCceeeccCCCCCCCchhHHHHHHHHHHH
Q 005212 541 EWEQMNCGIFLYWHGRLIEA-YKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKV 619 (709)
Q Consensus 541 e~~~~~~Gi~vY~nnRLIk~-yeKVg~q~~~~~~grGVIGVVe~~~l~~p~~~~~~pthnKQdFe~t~~Y~~L~~~L~e~ 619 (709)
.....|+-+|.|+=||.- .+.+-|.+ .+=|=|||+++.| | ++-+...+.+...++++.+.|.++
T Consensus 260 --~~~~~~v~LY~~rVfI~d~~~~lLP~w-----l~FvrGVVDS~DL--p------LNvSRE~LQ~~~~l~~ir~~i~kk 324 (601)
T PRK14083 260 --PAARRKHRVYLKRMLLSEEAENLLPDW-----AFFVRCVVNTDEL--R------PTASREALYEDDALAAVREELGEA 324 (601)
T ss_pred --ccccCceEEEeeeeEeecchhhhhHHH-----HHHheeeeecCCC--C------CccCHHHHccCHHHHHHHHHHHHH
Confidence 012468999999999953 23355542 3445699999976 3 246666788888888888888877
Q ss_pred HHHHHh
Q 005212 620 ADEYWD 625 (709)
Q Consensus 620 l~eYW~ 625 (709)
+.++-.
T Consensus 325 i~~~L~ 330 (601)
T PRK14083 325 IRKWLI 330 (601)
T ss_pred HHHHHH
Confidence 765543
No 7
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.78 E-value=1.3e-18 Score=202.16 Aligned_cols=164 Identities=23% Similarity=0.301 Sum_probs=124.5
Q ss_pred HHHHHhccccccCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005212 242 SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (709)
Q Consensus 242 ~~L~slstshi~~~f~AIaELIDNA~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (709)
+.|+-+..+.|+++..+|+|||+||.||.. ..+.|.|.. +.+...|+|.|||+||+.+
T Consensus 13 ~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~------d~~~~~L~I~DnGiGMt~e 86 (701)
T PTZ00272 13 QLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVP------DKENKTLTVEDNGIGMTKA 86 (701)
T ss_pred HHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEE------cCCCCEEEEEECCCCCCHH
Confidence 345555777778888889999999999953 245666653 3345789999999999999
Q ss_pred hHhhhh-hcccCCC--------CCCCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEcC-c
Q 005212 306 DVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-V 375 (709)
Q Consensus 306 eL~~~l-~fG~s~k--------~~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VPi-~ 375 (709)
|+.+.+ .+|.|.. ...+...||+||+||+|++| +|++|.|.||+.+. .++.|.+ .+...++|-- +
T Consensus 87 dl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fm-vad~V~V~Srs~~~--~~~~W~s--~~~g~y~i~~~~ 161 (701)
T PTZ00272 87 DLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYL-VADRVTVTSKNNSD--ESYVWES--SAGGTFTITSTP 161 (701)
T ss_pred HHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEE-eccEEEEEEecCCC--ceEEEEE--CCCCcEEEEeCC
Confidence 998865 3555421 12346799999999999877 99999999998764 5888887 4555666633 2
Q ss_pred cc-CCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHHH
Q 005212 376 SY-YRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (709)
Q Consensus 376 ~~-~~~Gt~I~l~~~~e~-e~~~e~~L~~-I~kySPF~s~~I~e 416 (709)
.. ..+||+|+|+++++. ++..++.++. |.+||.|..+||..
T Consensus 162 ~~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l 205 (701)
T PTZ00272 162 ESDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIEL 205 (701)
T ss_pred CCCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEE
Confidence 22 258999999998765 6777888755 99999999998863
No 8
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.68 E-value=9.9e-18 Score=158.81 Aligned_cols=97 Identities=34% Similarity=0.511 Sum_probs=80.9
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCC-CCCCcccccccee
Q 005212 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA-DDPNRIGRFGVGF 333 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~-~~~~~IG~fGiGf 333 (709)
+..||+|||+||+||.|++|.|.|+.. ..+...|.|.|||.||+.++|..++.+|.+.+.. .+...+|+||+|+
T Consensus 3 ~~~al~ElI~Ns~DA~a~~I~I~i~~~-----~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~ 77 (137)
T PF13589_consen 3 PEDALRELIDNSIDAGATNIKISIDED-----KKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGL 77 (137)
T ss_dssp CTHHHHHHHHHHHHHHHHHEEEEEEEE-----TTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGC
T ss_pred HHHHHHHHHHHHHHccCCEEEEEEEcC-----CCCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEH
Confidence 478999999999999999999999852 2356899999999999999999998999876631 1367899999999
Q ss_pred eeecccccCeEEEEEeeCCCCce
Q 005212 334 KTGAMRLGKDALVLTQTADSRSI 356 (709)
Q Consensus 334 KsAsmrLg~~v~V~TK~~g~~sv 356 (709)
|.|++.+|+.+.|+|++.+....
T Consensus 78 k~A~~~~~~~~~v~S~~~~~~~~ 100 (137)
T PF13589_consen 78 KLAIFSLGDRVEVISKTNGESFT 100 (137)
T ss_dssp GGGGGGTEEEEEEEEESTTSSSE
T ss_pred HHHHHHhcCEEEEEEEECCCCcE
Confidence 99999999999999999987553
No 9
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=4.9e-16 Score=173.84 Aligned_cols=151 Identities=31% Similarity=0.437 Sum_probs=119.0
Q ss_pred CHHHHHHHHHhcccccCC--------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh----ccc
Q 005212 254 WIFGAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY----FGH 315 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A--------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~----fG~ 315 (709)
..| ++|||.||.||.. ....|.|.. +.....|+|.|+|+|||.+||.+.++ -|+
T Consensus 59 EvF--lRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~------nk~~~tlti~DtGIGMTk~dLvnnLGTIAkSGt 130 (656)
T KOG0019|consen 59 EVF--LRELISNASDALEKLRYLELKGDEKALPELEIRIIT------NKDKRTITIQDTGIGMTKEDLVNNLGTIAKSGS 130 (656)
T ss_pred HHH--HHhhhccccchHHHHHHHhhcCccccccceeEEecc------CCCcceEEEEecCCCcCHHHHHhhhhhhhhccc
Confidence 355 9999999999942 356666653 56678999999999999999999764 343
Q ss_pred C-----CC-CCCCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEcCcccCCCCcEEEEEec
Q 005212 316 K-----QP-DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTV 389 (709)
Q Consensus 316 s-----~k-~~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VPi~~~~~~Gt~I~l~~~ 389 (709)
+ .+ ..++...|||||+|||||++ ++.+|.|+||+.+.. ++.|.+ .+...++|...+-..+||.|+++++
T Consensus 131 K~Fmealkea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~~e--~y~Wes--~~~gs~~v~~~~~~~rGTki~l~lK 205 (656)
T KOG0019|consen 131 KAFLEALKEAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPADE--GLQWTS--NGRGSYEIAEASGLRTGTKIVIHLK 205 (656)
T ss_pred HHHHHHHHhcccchhhhhhcccchhhhhh-hhheeEEeeccCCCc--ceeeec--CCCCceEEeeccCccccceEEeeeh
Confidence 2 12 34567899999999999888 999999999998865 777776 4555666655444678999999999
Q ss_pred c-chhhhhhhhhhh-hhhcCCCcchhHHHh
Q 005212 390 V-QSEATAKYNLKS-IKEFSPFNKYLIGEK 417 (709)
Q Consensus 390 ~-e~e~~~e~~L~~-I~kySPF~s~~I~e~ 417 (709)
. +.++.++..++. +.|||.|..+||.-.
T Consensus 206 e~~~ey~ee~rikeiVKK~S~Fv~yPI~l~ 235 (656)
T KOG0019|consen 206 EGDCEFLEEKRIKEVVKKYSNFVSYPIYLN 235 (656)
T ss_pred hhhhhhccHhHHHHHHhhccccccccchhh
Confidence 7 557888878755 999999999988743
No 10
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.8e-16 Score=168.97 Aligned_cols=151 Identities=26% Similarity=0.430 Sum_probs=113.4
Q ss_pred CHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh----c
Q 005212 254 WIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY----F 313 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~----f 313 (709)
.+| |+|||.||.||-. ..+.|.|.. +..+..|.|.|.|.||++++|.+.++ .
T Consensus 97 eIF--LRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~------Dke~klLhi~DtGiGMT~edLi~NLGTIAkS 168 (785)
T KOG0020|consen 97 EIF--LRELISNASDALDKIRLLALTDKDVLGETEELEIKIKA------DKEKKLLHITDTGIGMTREDLIKNLGTIAKS 168 (785)
T ss_pred HHH--HHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEee------chhhCeeeEecccCCccHHHHHHhhhhhhcc
Confidence 456 9999999999953 245566553 45678999999999999999998764 3
Q ss_pred ccCC-----CCCC-----CCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEcCcccC---CC
Q 005212 314 GHKQ-----PDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYY---RK 380 (709)
Q Consensus 314 G~s~-----k~~~-----~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VPi~~~~---~~ 380 (709)
|++. .... ....|||||+||++|++ +++++.|+||+++.. .++|.+ ...++.|.-..|. ++
T Consensus 169 GTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfL-VAD~vvVtsKhNdD~--QyiWES---dan~FsvseDprg~tL~R 242 (785)
T KOG0020|consen 169 GTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFL-VADRVVVTSKHNDDS--QYIWES---DANSFSVSEDPRGNTLGR 242 (785)
T ss_pred cHHHHHHHhhccccchhhHHHHHHhcchhhhhhhh-hcceEEEEeccCCcc--ceeeec---cCcceeeecCCCCCcccC
Confidence 4321 1111 13789999999999777 999999999998763 456665 2336666555553 58
Q ss_pred CcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHHHhh
Q 005212 381 GQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGEKA 418 (709)
Q Consensus 381 Gt~I~l~~~~e~-e~~~e~~L~~-I~kySPF~s~~I~e~~ 418 (709)
||.|+|+++++. +++++..++. +.+||.|+++||..+.
T Consensus 243 Gt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWs 282 (785)
T KOG0020|consen 243 GTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWS 282 (785)
T ss_pred ccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeee
Confidence 999999998764 6777777755 9999999999887543
No 11
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.51 E-value=2.8e-13 Score=157.41 Aligned_cols=109 Identities=23% Similarity=0.391 Sum_probs=85.9
Q ss_pred eeecCHHHHHHh-ccccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh-c
Q 005212 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 313 (709)
Q Consensus 236 ~~~v~p~~L~sl-stshi~~~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-f 313 (709)
+..+++...+.+ +.+.+..|.+|++|||+||+||||++|+|.++ .+|...|.|.|||+||+++|+.-++. .
T Consensus 4 Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGAt~I~I~ve-------~gG~~~I~V~DNG~Gi~~~Dl~la~~rH 76 (638)
T COG0323 4 IRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVE-------GGGLKLIRVRDNGSGIDKEDLPLALLRH 76 (638)
T ss_pred ceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCCCEEEEEEc-------cCCccEEEEEECCCCCCHHHHHHHHhhh
Confidence 578999999999 55677899999999999999999999999997 56788899999999999999988754 4
Q ss_pred ccCC-CCCCCCCccccccceeeeecc---cccCeEEEEEeeCCC
Q 005212 314 GHKQ-PDADDPNRIGRFGVGFKTGAM---RLGKDALVLTQTADS 353 (709)
Q Consensus 314 G~s~-k~~~~~~~IG~fGiGfKsAsm---rLg~~v~V~TK~~g~ 353 (709)
.+|. ....|...|-.| ||..-++ .--.+++|.||+.+.
T Consensus 77 aTSKI~~~~DL~~I~Tl--GFRGEAL~SIasVsrlti~Srt~~~ 118 (638)
T COG0323 77 ATSKIASLEDLFRIRTL--GFRGEALASIASVSRLTITSRTAEA 118 (638)
T ss_pred ccccCCchhHHHHhhcc--CccHHHHHHHHhhheeEEEeecCCc
Confidence 4432 223344455555 7875443 444899999996543
No 12
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.46 E-value=3e-12 Score=148.76 Aligned_cols=110 Identities=23% Similarity=0.299 Sum_probs=85.3
Q ss_pred eeeecCHHHHHHh-ccccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhc
Q 005212 235 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYF 313 (709)
Q Consensus 235 ~~~~v~p~~L~sl-stshi~~~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~f 313 (709)
.+..++++.++.+ |...+.+|.++|+|||+||+||||+.|.|.+. .++...|.|.|||.||+.+++..++..
T Consensus 2 ~I~~L~~~v~~~IaAgevI~~~~svvkElveNsiDAgat~I~v~i~-------~~g~~~i~V~DnG~Gi~~~~~~~~~~~ 74 (617)
T PRK00095 2 PIQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIE-------EGGLKLIRVRDNGCGISKEDLALALAR 74 (617)
T ss_pred CceECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhCCCCEEEEEEE-------eCCeEEEEEEEcCCCCCHHHHHHHhhc
Confidence 3578999999999 55667899999999999999999999999996 235678999999999999999988764
Q ss_pred ccCCCCC--CC---CCccccccceeeeecccccCeEEEEEeeCCC
Q 005212 314 GHKQPDA--DD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADS 353 (709)
Q Consensus 314 G~s~k~~--~~---~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~ 353 (709)
..+.|-. ++ ....|..|.|+.+.+ .+ .+++|.||+.+.
T Consensus 75 ~~tsKi~~~~dl~~~~t~GfrGeAL~sI~-~v-s~l~i~s~~~~~ 117 (617)
T PRK00095 75 HATSKIASLDDLEAIRTLGFRGEALPSIA-SV-SRLTLTSRTADA 117 (617)
T ss_pred cCCCCCCChhHhhccccCCcchhHHHhhh-hc-eEEEEEEecCCC
Confidence 4444421 12 256677777774332 34 489999998754
No 13
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=8.5e-12 Score=133.63 Aligned_cols=140 Identities=19% Similarity=0.261 Sum_probs=97.0
Q ss_pred eeeecCHHHHHHh-ccccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhc
Q 005212 235 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYF 313 (709)
Q Consensus 235 ~~~~v~p~~L~sl-stshi~~~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~f 313 (709)
.+.+++++..+.+ |.+.+.++..||.|||+||+||+|+.|.|.+.. .+...|.|.|||.||+.+++..++..
T Consensus 2 ~I~~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~~I~i~~~~-------~~~~~i~V~DnG~Gi~~~~l~~~~~~ 74 (312)
T TIGR00585 2 TIKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEE-------GGLKLIEVSDNGSGIDKEDLPLACER 74 (312)
T ss_pred cCeECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCEEEEEEEecCCCCCHHHHHHHhhC
Confidence 4578999999999 445668999999999999999999999888763 23446999999999999999988664
Q ss_pred ccCCCCC-----CCCCccccccceeeeecccccCeEEEEEee-CCCCceeEEEeeccCCCccEEEcCcccCCCCcEEEEE
Q 005212 314 GHKQPDA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQT-ADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (709)
Q Consensus 314 G~s~k~~-----~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~-~g~~svg~ls~tf~eg~~~i~VPi~~~~~~Gt~I~l~ 387 (709)
+.+.|.. ......|..|.|+.+ ...++ +++|.||+ .+. ..++.+. . +|. .+.-..+.-...||.|++.
T Consensus 75 ~~tsk~~~~~~~~~~~~~G~rG~al~s-i~~~s-~~~i~S~~~~~~-~~~~~~~-~-~g~-~~~~~~~~~~~~GTtV~v~ 148 (312)
T TIGR00585 75 HATSKIQSFEDLERIETLGFRGEALAS-ISSVS-RLTITTKTSAAD-GLAWQAL-L-EGG-MIEEIKPAPRPVGTTVEVR 148 (312)
T ss_pred CCcCCCCChhHhhcccccCccchHHHH-HHhhC-cEEEEEeecCCC-cceEEEE-E-CCC-cCcccccccCCCccEEEEc
Confidence 4433321 124678999999843 33355 89999998 443 3344333 2 222 1110112223579998774
No 14
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=99.08 E-value=2.1e-11 Score=97.42 Aligned_cols=37 Identities=35% Similarity=0.656 Sum_probs=26.0
Q ss_pred ceeeCccccccccCCCCCCC--CCCCCceeeCC--------CCchhh
Q 005212 645 EWVQCNKCRKWRMLDPGFDT--KSLPVECLLRG--------CVIFLS 681 (709)
Q Consensus 645 ~wvQCd~C~KWR~Lp~~~~~--~~lp~~W~c~~--------c~~~~~ 681 (709)
.|||||.|+|||.||.+++. ..+|+.|+|++ |++|++
T Consensus 2 ~WVQCd~C~KWR~lp~~~~~~~~~~~d~W~C~~n~~~~~~sC~~pee 48 (50)
T PF07496_consen 2 YWVQCDSCLKWRRLPEEVDPIREELPDPWYCSMNPDPPFNSCDAPEE 48 (50)
T ss_dssp EEEE-TTT--EEEE-CCHHCTSCCSSTT--GGGSS-CCC-STTS--S
T ss_pred eEEECCCCCceeeCChhhCcccccCCCeEEcCCCCCCCCCCCCCccc
Confidence 69999999999999999887 89999999985 777665
No 15
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.01 E-value=1.1e-09 Score=120.60 Aligned_cols=136 Identities=22% Similarity=0.244 Sum_probs=97.9
Q ss_pred cccCHHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh-cccCCCCCCCCC
Q 005212 251 HSGWIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPN 324 (709)
Q Consensus 251 hi~~~f~AIaELIDNA~DA~A-----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~s~k~~~~~~ 324 (709)
-+.++.++|+|||+||+||.. +.|.|.|+.. +.+...+.|.|||.||+.+.+.++|+ +-+++|.....+
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~-----~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~Q 107 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERI-----GKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQ 107 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEec-----CCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhh
Confidence 345688999999999999963 6788888753 45678899999999999999999875 222223223568
Q ss_pred ccccccceeeeec----ccccCeEEEEEeeCCCCceeEEEeecc-CCCccEEEcCcccC----CCCcEEEEEeccc
Q 005212 325 RIGRFGVGFKTGA----MRLGKDALVLTQTADSRSIAFLSQSLN-QGKDNLEIPIVSYY----RKGQFMELDTVVQ 391 (709)
Q Consensus 325 ~IG~fGiGfKsAs----mrLg~~v~V~TK~~g~~svg~ls~tf~-eg~~~i~VPi~~~~----~~Gt~I~l~~~~e 391 (709)
..||+|+|.+.|. |..|+.+.|+|++.++..+-..+-..+ ..++..+|.-..++ -+||.|+++++..
T Consensus 108 sRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~~~~~ 183 (538)
T COG1389 108 SRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELELKGV 183 (538)
T ss_pred ccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEEeccc
Confidence 8999999997654 478999999999998755544443322 23344444432222 3799999988754
No 16
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.84 E-value=8.1e-09 Score=116.05 Aligned_cols=141 Identities=21% Similarity=0.350 Sum_probs=103.3
Q ss_pred eeeecCHHHHHHh-ccccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhh-h
Q 005212 235 NFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-Y 312 (709)
Q Consensus 235 ~~~~v~p~~L~sl-stshi~~~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l-~ 312 (709)
.+.+++..++..+ +...|..|..||.|||.||+||+++.|.|.+. ++|-..|.|.|||.||.++||.-+. +
T Consensus 7 ~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk-------~GGLKLlQisDnG~GI~reDl~ilCeR 79 (694)
T KOG1979|consen 7 KIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVK-------DGGLKLLQISDNGSGIRREDLPILCER 79 (694)
T ss_pred hhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEe-------cCCeEEEEEecCCCccchhhhHHHHHH
Confidence 4678999999999 45667899999999999999999999999876 5677889999999999999998753 5
Q ss_pred cccCCC-CCCCCCccccccceeee---ecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEcCcccCCCCcEEEEE
Q 005212 313 FGHKQP-DADDPNRIGRFGVGFKT---GAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (709)
Q Consensus 313 fG~s~k-~~~~~~~IG~fGiGfKs---AsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VPi~~~~~~Gt~I~l~ 387 (709)
|.+|.- ..+|...+..| ||.. |+++-..+|+|.||.++..+.- -.+|.+|.=. .-|-+.--.+||.|++.
T Consensus 80 ftTSKL~kFEDL~~lsTy--GFRGEALASiShVA~VtV~TK~~~~~cay--rasY~DGkm~-~~pKpcAgk~GT~I~ve 153 (694)
T KOG1979|consen 80 FTTSKLTKFEDLFSLSTY--GFRGEALASISHVAHVTVTTKTAEGKCAY--RASYRDGKMI-ATPKPCAGKQGTIITVE 153 (694)
T ss_pred hhhhhcchhHHHHhhhhc--CccHHHHhhhhheeEEEEEEeecCceeee--EEEeeccccc-cCCCCccCCCceEEEeh
Confidence 777642 23466777777 6664 5667779999999998875432 2233333110 12444444578888763
No 17
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.82 E-value=7e-09 Score=118.80 Aligned_cols=106 Identities=23% Similarity=0.319 Sum_probs=76.0
Q ss_pred eecCHHHHHHh-ccccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhh-hhcc
Q 005212 237 VRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRM-TYFG 314 (709)
Q Consensus 237 ~~v~p~~L~sl-stshi~~~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~-l~fG 314 (709)
..++++..|.+ +.+.+.++..|++|||+||+||||+.|+|.++ +.|...|.|.|||+|++..++.-+ +..-
T Consensus 2 k~i~~~tvhrI~S~qvI~sl~sAVKELvENSiDAGAT~I~I~~k-------dyG~d~IEV~DNG~GI~~~n~~~l~lkh~ 74 (672)
T KOG1978|consen 2 KQIPKDTVHRICSSQVITSLVSAVKELVENSIDAGATAIDIKVK-------DYGSDSIEVSDNGSGISATDFEGLALKHT 74 (672)
T ss_pred CCCChhhhhccccCCeeccHHHHHHHHHhcCcccCCceeeEecC-------CCCcceEEEecCCCCCCccchhhhhhhhh
Confidence 35788889999 45556789999999999999999999999987 347889999999999999887653 2221
Q ss_pred c-CCCCCCCCCccccccceeeeecc-ccc--CeEEEEEeeC
Q 005212 315 H-KQPDADDPNRIGRFGVGFKTGAM-RLG--KDALVLTQTA 351 (709)
Q Consensus 315 ~-s~k~~~~~~~IG~fGiGfKsAsm-rLg--~~v~V~TK~~ 351 (709)
+ +.....|.. .-+-.||...++ .|| .+++|.|++.
T Consensus 75 TSKi~~f~Dl~--~l~T~GFRGEALSsLCa~~dv~I~Trt~ 113 (672)
T KOG1978|consen 75 TSKIVSFADLA--VLFTLGFRGEALSSLCALGDVMISTRSH 113 (672)
T ss_pred hhcccchhhhh--hhhhhhhHHHHHHhhhhccceEEEEeec
Confidence 2 111222322 233346765444 244 7888888886
No 18
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.71 E-value=1e-07 Score=108.93 Aligned_cols=96 Identities=25% Similarity=0.405 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh-cccCCCCCCCCCcccc
Q 005212 255 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGR 328 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~s~k~~~~~~~IG~ 328 (709)
+..+|.|||+||+||.+. .|.|.+... ..+.+...|.|.|||.||+++++.+++. |.++.+........|.
T Consensus 37 L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~---~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~ 113 (535)
T PRK04184 37 LYTTVKELVDNSLDACEEAGILPDIKIEIKRV---DEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQ 113 (535)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEEEc---cCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCC
Confidence 578999999999999865 466666521 0123346799999999999999999864 3333332111456799
Q ss_pred ccceeeeecc----cccCeEEEEEeeCCC
Q 005212 329 FGVGFKTGAM----RLGKDALVLTQTADS 353 (709)
Q Consensus 329 fGiGfKsAsm----rLg~~v~V~TK~~g~ 353 (709)
+|+|+.++.. ..|..+.|.|+..+.
T Consensus 114 ~GLGLsiv~~isq~~~G~~I~V~S~~~~g 142 (535)
T PRK04184 114 QGIGISAAVLYAQMTTGKPVRVISSTGGS 142 (535)
T ss_pred CCcchHHHHHHHHHhcCCcEEEEEecCCC
Confidence 9999965432 235679999987654
No 19
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.71 E-value=1.2e-07 Score=110.95 Aligned_cols=94 Identities=24% Similarity=0.315 Sum_probs=69.0
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh-cccCCCCCCCCCccc
Q 005212 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A~-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~s~k~~~~~~~IG 327 (709)
++..+|.|||+||+||.+. .|.|.+.. ......|.|.|||.||+++++.+++. |.++.+........|
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~------~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG 119 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEE------VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRG 119 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEE------CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCC
Confidence 5778999999999999875 46666652 22335799999999999999999885 554433222235678
Q ss_pred cccceeeeecc----cccCeEEEEEeeCCC
Q 005212 328 RFGVGFKTGAM----RLGKDALVLTQTADS 353 (709)
Q Consensus 328 ~fGiGfKsAsm----rLg~~v~V~TK~~g~ 353 (709)
+.|+|+.++.. .-|..+.|.|+..+.
T Consensus 120 ~rG~GLglai~~sqlt~GgpI~I~S~~~~~ 149 (795)
T PRK14868 120 QQGIGISAAVLYSQLTSGKPAKITSRTQGS 149 (795)
T ss_pred CCceehHHHHHHHHHcCCCcEEEEeCCCCC
Confidence 89999976543 347789999988664
No 20
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.57 E-value=2.8e-07 Score=104.40 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=70.2
Q ss_pred cCHHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh-cccCCCCCCCCCcc
Q 005212 253 GWIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRI 326 (709)
Q Consensus 253 ~~~f~AIaELIDNA~DA~A~-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~s~k~~~~~~~I 326 (709)
..+..++.|||+||+||.+. .|.|.+... +.+...|+|.|||.||+.+++..++. |.++.|........
T Consensus 27 ~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~-----g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~ 101 (488)
T TIGR01052 27 RSLTTVIHELVTNSLDACEEAGILPDIKVEIEKI-----GKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSR 101 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----CCceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccC
Confidence 45679999999999999875 566666521 11234799999999999999999875 44444432234567
Q ss_pred ccccceeeeecc----cccCeEEEEEeeCCCC
Q 005212 327 GRFGVGFKTGAM----RLGKDALVLTQTADSR 354 (709)
Q Consensus 327 G~fGiGfKsAsm----rLg~~v~V~TK~~g~~ 354 (709)
|..|+|+.++.+ ..|+.+.|.|+..+..
T Consensus 102 G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~ 133 (488)
T TIGR01052 102 GQQGIGISGAVLYSQMTTGKPVKVISSTGGEI 133 (488)
T ss_pred CCccEehhHHHHHHHHcCCceEEEEEecCCce
Confidence 899999965433 3456699999988653
No 21
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.48 E-value=5.8e-07 Score=105.23 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=83.4
Q ss_pred cCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhh--------hhh-cccCCCC
Q 005212 253 GWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPD 319 (709)
Q Consensus 253 ~~~f~AIaELIDNA~DA----~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-fG~s~k~ 319 (709)
.-+...+.||||||+|+ .|+.|.|.|.. ...|+|.|||.||+.+.... +|. +..+.|-
T Consensus 36 ~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~---------dg~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsKf 106 (631)
T PRK05559 36 RGLHHLVQEVIDNSVDEALAGHGKRIEVTLHA---------DGSVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGKF 106 (631)
T ss_pred chhhhhhhhhhccccchhhcCCCCEEEEEEeC---------CCcEEEEEcCCCCCcccccccCCcchheeeeeccccCcc
Confidence 45778899999999998 78999999873 24899999999999987766 332 1222222
Q ss_pred C--CCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEcC-ccc--CCCCcEEEEEec
Q 005212 320 A--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSY--YRKGQFMELDTV 389 (709)
Q Consensus 320 ~--~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VPi-~~~--~~~Gt~I~l~~~ 389 (709)
. .-....|..|+|.+ +.-.++..++|.|++++.. +.++|..|...-.++. ... ...||.|++.+.
T Consensus 107 ~~~~yk~SgGl~GvGls-~vNalS~~l~V~s~r~g~~----~~~~f~~G~~~~~l~~~~~~~~~~~GT~V~f~PD 176 (631)
T PRK05559 107 SNKAYKFSGGLHGVGVS-VVNALSSRLEVEVKRDGKV----YRQRFEGGDPVGPLEVVGTAGKRKTGTRVRFWPD 176 (631)
T ss_pred CCccccccCcccccchh-hhhhheeeEEEEEEeCCeE----EEEEEECCcCccCccccccccCCCCCcEEEEEEC
Confidence 1 12367899999995 4555889999999987642 4455643321111111 111 457999987653
No 22
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.39 E-value=9.4e-07 Score=103.33 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcccc---c-CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHh--------Hhhhhh-cccCCCC--
Q 005212 255 IFGAIAELVDNSRD---A-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPD-- 319 (709)
Q Consensus 255 ~f~AIaELIDNA~D---A-~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-fG~s~k~-- 319 (709)
+..+|.||||||+| | +|++|.|.|.. ...|+|.|||.||+.++ +.-+|+ ...+.|-
T Consensus 31 ~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~---------d~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK~~~ 101 (625)
T TIGR01055 31 PNHLVQEVIDNSVDEALAGFASIIMVILHQ---------DQSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGKFSN 101 (625)
T ss_pred cceeehhhhhcccchhhcCCCCEEEEEEeC---------CCeEEEEecCCccCcccccccCCcHHHHhhhcccccCCCCC
Confidence 44569999999999 9 69999999872 26899999999999877 544442 2222221
Q ss_pred CCCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEcC-ccc--CCCCcEEEEEec
Q 005212 320 ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSY--YRKGQFMELDTV 389 (709)
Q Consensus 320 ~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VPi-~~~--~~~Gt~I~l~~~ 389 (709)
..-....|..|+|+++ .-.++..++|.|++++.. +.++|..|.....++. ... ...||+|+..+.
T Consensus 102 ~~~~~SgG~~GvGls~-vnalS~~l~v~~~r~g~~----~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~F~PD 169 (625)
T TIGR01055 102 KNYHFSGGLHGVGISV-VNALSKRVKIKVYRQGKL----YSIAFENGAKVTDLISAGTCGKRLTGTSVHFTPD 169 (625)
T ss_pred CcceecCCCcchhHHH-HHHhcCeEEEEEEECCeE----EEEEEECCeEccccccccccCCCCCCeEEEEEEC
Confidence 1123578999999954 555899999999987753 4556644421111121 122 237999987553
No 23
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=98.28 E-value=4.4e-06 Score=99.22 Aligned_cols=120 Identities=17% Similarity=0.183 Sum_probs=78.0
Q ss_pred HHHHHHHHHhcccc---cC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH----------hHhhhhhcccCCCCC
Q 005212 255 IFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ----------DVVRMTYFGHKQPDA 320 (709)
Q Consensus 255 ~f~AIaELIDNA~D---A~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e----------eL~~~l~fG~s~k~~ 320 (709)
+--.+.||||||+| || ++.|.|.|.. ...++|.|||.||+.+ |+.-. ....+.|-.
T Consensus 38 Lhhlv~EivdNaiDE~~AG~a~~I~V~i~~---------dgsIsV~DnGrGIPvd~h~~~g~~~~Elvlt-~lhAggKfd 107 (756)
T PRK14939 38 LHHMVYEVVDNAIDEALAGHCDDITVTIHA---------DGSVSVSDNGRGIPTDIHPEEGVSAAEVIMT-VLHAGGKFD 107 (756)
T ss_pred hhhhhhHhhcccccccccCCCCEEEEEEcC---------CCeEEEEEcCCcccCCcccccCCchhhheee-eecccCCCC
Confidence 34459999999999 98 9999999872 2489999999999986 22211 111122211
Q ss_pred C--CCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEc-CcccCCCCcEEEEEec
Q 005212 321 D--DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSYYRKGQFMELDTV 389 (709)
Q Consensus 321 ~--~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VP-i~~~~~~Gt~I~l~~~ 389 (709)
. -.-.-|..|+|.+ +.-.++..+.|.|++++.. +.++|..|.-.-.++ +..-...||.|+..+.
T Consensus 108 ~~~ykvSgGlhGvG~s-vvNAlS~~l~v~v~r~gk~----~~q~f~~G~~~~~l~~~g~~~~~GT~V~F~PD 174 (756)
T PRK14939 108 QNSYKVSGGLHGVGVS-VVNALSEWLELTIRRDGKI----HEQEFEHGVPVAPLKVVGETDKTGTEVRFWPS 174 (756)
T ss_pred CCcccccCCccCccce-EeehccCeEEEEEEeCCeE----EEEEEecCccccCccccCCcCCCCcEEEEEEC
Confidence 1 1236799999994 4556999999999987753 556664442111011 1112457999987654
No 24
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.25 E-value=6.8e-07 Score=80.33 Aligned_cols=89 Identities=20% Similarity=0.318 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccce
Q 005212 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiG 332 (709)
+..+|.||++||+++... .|.|.+.. ..+...|.|.|||.||+.+++.+++.-+.+.+. +....+.+|+|
T Consensus 6 l~~il~~ll~Na~~~~~~~~~I~i~~~~------~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~--~~~~~~g~GlG 77 (111)
T PF02518_consen 6 LRQILSELLDNAIKHSPEGGKIDITIEE------DDDHLSIEISDNGVGIPPEELEKLFEPFFTSDK--SETSISGHGLG 77 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHTSEEEEEEEE------ETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS--SSGGSSSSSHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEE------ecCeEEEEEEeccccccccccccchhhcccccc--cccccCCCChH
Confidence 567899999999999765 77777764 335678999999999999999998764443322 34556669999
Q ss_pred eeeecc---cccCeEEEEEeeC
Q 005212 333 FKTGAM---RLGKDALVLTQTA 351 (709)
Q Consensus 333 fKsAsm---rLg~~v~V~TK~~ 351 (709)
|+.+.. .++-++.+.+...
T Consensus 78 L~~~~~~~~~~~g~l~~~~~~~ 99 (111)
T PF02518_consen 78 LYIVKQIAERHGGELTIESSEG 99 (111)
T ss_dssp HHHHHHHHHHTTEEEEEEEETT
T ss_pred HHHHHHHHHHCCCEEEEEEcCC
Confidence 965432 4566666666543
No 25
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.24 E-value=3.2e-06 Score=98.49 Aligned_cols=114 Identities=19% Similarity=0.241 Sum_probs=74.1
Q ss_pred HHHHHhcccccC----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhh--------hhh-cccCCCC--CCCC
Q 005212 259 IAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPD--ADDP 323 (709)
Q Consensus 259 IaELIDNA~DA~----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-fG~s~k~--~~~~ 323 (709)
+.||||||+||+ |+.|.|.|+. . ..|+|.|||.||+.+.... ++. .-.+.+- ....
T Consensus 6 v~ElvdNAiD~~~~g~at~I~V~i~~-------~--g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k 76 (594)
T smart00433 6 VDEIVDNAADEALAGYMDTIKVTIDK-------D--NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYK 76 (594)
T ss_pred EeeehhcccchhccCCCCEEEEEEeC-------C--CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCcc
Confidence 789999999998 9999999873 2 3899999999998644321 111 1111121 1123
Q ss_pred CccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccC-CC--ccEE-EcCcccCCCCcEEEEEe
Q 005212 324 NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ-GK--DNLE-IPIVSYYRKGQFMELDT 388 (709)
Q Consensus 324 ~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~e-g~--~~i~-VPi~~~~~~Gt~I~l~~ 388 (709)
...|..|+|++ +.-.++..++|.|+.++.. +.++|.. |. .... ++. -...||.|+..+
T Consensus 77 ~s~G~~G~Gls-~vnalS~~l~v~~~~~g~~----~~~~~~~~G~~~~~~~~~~~--~~~~GT~V~F~P 138 (594)
T smart00433 77 VSGGLHGVGAS-VVNALSTEFEVEVARDGKE----YKQSFSNNGKPLSEPKIIGD--TKKDGTKVTFKP 138 (594)
T ss_pred ccCCcccchHH-HHHHhcCceEEEEEeCCcE----EEEEEeCCCeECccceecCC--CCCCCcEEEEEE
Confidence 57899999995 4556889999999998653 4455533 31 1111 121 235799988644
No 26
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.22 E-value=6.7e-06 Score=96.56 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=75.7
Q ss_pred HHHHHHHHhcccc---cC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhh--------hhh-cccCCCCC--
Q 005212 256 FGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPDA-- 320 (709)
Q Consensus 256 f~AIaELIDNA~D---A~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-fG~s~k~~-- 320 (709)
.-.+.|||+||+| || |+.|.|.|.. ...|+|.|||.||+.+.-.. +|+ ...+.+..
T Consensus 39 ~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~ 109 (638)
T PRK05644 39 HHLVYEIVDNSIDEALAGYCDHIEVTINE---------DGSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGG 109 (638)
T ss_pred HhhhHHhhhcccccccCCCCCEEEEEEeC---------CCcEEEEEeCccccCCccCCCCCCchHHheeeecccCccCCC
Confidence 4458999999999 99 9999999872 23899999999999862221 122 11112211
Q ss_pred CCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEc-CcccCCCCcEEEEEe
Q 005212 321 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-IVSYYRKGQFMELDT 388 (709)
Q Consensus 321 ~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VP-i~~~~~~Gt~I~l~~ 388 (709)
.-....|..|+|.++ .-.++..++|.|++++. .+.++|..|...-.++ +..-...||+|+..+
T Consensus 110 ~yk~s~G~~G~Gls~-vnalS~~~~v~t~r~g~----~~~~~~~~G~~~~~~~~~~~~~~~GT~I~F~P 173 (638)
T PRK05644 110 GYKVSGGLHGVGVSV-VNALSTWLEVEVKRDGK----IYYQEYERGVPVTPLEVIGETDETGTTVTFKP 173 (638)
T ss_pred cccccCCccccchhh-hhheeceEEEEEEeCCc----EEEEEEECCeEccCccccCCcCCCCcEEEEEE
Confidence 123478999999954 44588999999998765 2345554332110111 111235799998644
No 27
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.20 E-value=7.8e-06 Score=96.33 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcccc---cC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHh--------hhhh-cccCCCC--
Q 005212 255 IFGAIAELVDNSRD---AK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV--------RMTY-FGHKQPD-- 319 (709)
Q Consensus 255 ~f~AIaELIDNA~D---A~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~--------~~l~-fG~s~k~-- 319 (709)
+.-.+.|||+||+| || |+.|.|.|.. ...|+|.|||.||+.+.-. .++. +..+.+.
T Consensus 31 l~~vv~Elv~NaiDe~~ag~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~kf~~ 101 (654)
T TIGR01059 31 LHHLVYEVVDNSIDEAMAGYCDTINVTIND---------DGSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKFDK 101 (654)
T ss_pred HHhhhHHhhhccccccccCCCCEEEEEEeC---------CCcEEEEEeCCCcCccccCcCCCCchHHheeeecccCccCC
Confidence 45669999999999 99 9999999872 2359999999999975211 1121 1112221
Q ss_pred CCCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCcc--EEEcCcccCCCCcEEEEEec
Q 005212 320 ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN--LEIPIVSYYRKGQFMELDTV 389 (709)
Q Consensus 320 ~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~--i~VPi~~~~~~Gt~I~l~~~ 389 (709)
..-....|..|+|+++ .-.+++.++|.|++++.. +.++|..|.-. ..+ ...-...||+|+....
T Consensus 102 ~~~k~s~G~~G~gl~~-inalS~~l~v~~~~~g~~----~~~~~~~G~~~~~l~~-~~~~~~~GT~V~F~pd 167 (654)
T TIGR01059 102 DSYKVSGGLHGVGVSV-VNALSEWLEVTVFRDGKI----YRQEFERGIPLGPLEV-VGETKKTGTTVRFWPD 167 (654)
T ss_pred CcceecCCccchhHHH-HHHhcCeEEEEEEECCeE----EEEEEeCCCcccCcee-ccCCCCCCcEEEEEEC
Confidence 1123578999999954 445889999999987653 44555444211 111 1112357999886543
No 28
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.08 E-value=1.3e-05 Score=93.80 Aligned_cols=94 Identities=26% Similarity=0.284 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh-cccCCCCCCCCCcccc
Q 005212 255 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGR 328 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~s~k~~~~~~~IG~ 328 (709)
+..++.|||+||+||.+. .|.|.+... +.+...|.|.|||.||+++++.+++. |-.+.|........|.
T Consensus 37 L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~-----g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~ 111 (659)
T PRK14867 37 MTTIIHELVTNSLDACEEAEILPDIKVEIEKL-----GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQ 111 (659)
T ss_pred HHHHHHHHHHHHHHHhhccCCCceEEEEEEEC-----CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCC
Confidence 347899999999999875 577766531 12234699999999999999999875 3333332112356788
Q ss_pred ccceeeeec----ccccCeEEEEEeeCCC
Q 005212 329 FGVGFKTGA----MRLGKDALVLTQTADS 353 (709)
Q Consensus 329 fGiGfKsAs----mrLg~~v~V~TK~~g~ 353 (709)
.|+|+.++. +..|..+.|.|+..+.
T Consensus 112 rG~GLa~a~~vsql~~G~pI~I~S~~g~G 140 (659)
T PRK14867 112 QGIGAAGVLLFSQITTGKPLKITTSTGDG 140 (659)
T ss_pred CcccHHHHHHHHHHhcCCcEEEEEEcCCC
Confidence 999996554 2347778999987544
No 29
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=98.06 E-value=2.4e-06 Score=98.05 Aligned_cols=106 Identities=21% Similarity=0.329 Sum_probs=68.8
Q ss_pred ecCHHHHHHh-ccccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh-ccc
Q 005212 238 RADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGH 315 (709)
Q Consensus 238 ~v~p~~L~sl-stshi~~~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~ 315 (709)
.++..+=+++ |...+.+...++.|||-||+||+|+.|.|.+.. ....+.|.|||.||+.+||..+-. +.+
T Consensus 4 ~L~~~V~~~lrSg~~~~sla~~VeElv~NSiDA~At~V~v~V~~--------~t~sv~ViDdG~G~~rdDl~~lg~ry~T 75 (1142)
T KOG1977|consen 4 CLSVEVQAKLRSGLAISSLAQCVEELVLNSIDAEATCVAVRVNM--------ETFSVQVIDDGFGMGRDDLEKLGNRYFT 75 (1142)
T ss_pred ccchhHHHHHhccchHHHHHHHHHHHHhhccccCceEEEEEecC--------ceeEEEEEecCCCccHHHHHHHHhhhhh
Confidence 3455566666 444456788999999999999999999998874 257899999999999999987532 222
Q ss_pred CC-CCCCCCCccccccceeeeecc-ccc--CeEEEEEeeCCC
Q 005212 316 KQ-PDADDPNRIGRFGVGFKTGAM-RLG--KDALVLTQTADS 353 (709)
Q Consensus 316 s~-k~~~~~~~IG~fGiGfKsAsm-rLg--~~v~V~TK~~g~ 353 (709)
|. ...++...--.| ||...++ .++ ..+.|+||+.+-
T Consensus 76 SK~h~~ndl~~~~ty--GfRGeALasIsd~s~l~v~skkk~r 115 (1142)
T KOG1977|consen 76 SKCHSVNDLENPRTY--GFRGEALASISDMSSLVVISKKKNR 115 (1142)
T ss_pred hhceecccccccccc--ccchhhhhhhhhhhhhhhhhhhcCC
Confidence 21 111222222334 4543332 122 446677776653
No 30
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.66 E-value=0.0002 Score=84.31 Aligned_cols=117 Identities=19% Similarity=0.207 Sum_probs=73.3
Q ss_pred HHHHHHhcccc----cCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHh-------h-hhh-cccCCCCC--CC
Q 005212 258 AIAELVDNSRD----AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV-------R-MTY-FGHKQPDA--DD 322 (709)
Q Consensus 258 AIaELIDNA~D----A~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~-------~-~l~-fG~s~k~~--~~ 322 (709)
.+.|+||||+| ..++.|.|.|.. ...++|.|||.||+.+--. . +|+ +-.+.+.. .-
T Consensus 38 lv~EIvdNavDE~~ag~~~~I~V~i~~---------dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgkfd~~~y 108 (637)
T TIGR01058 38 LVWEIVDNSVDEVLAGYADNITVTLHK---------DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGKFDQGGY 108 (637)
T ss_pred ehhhhhcchhhhhhcCCCcEEEEEEcC---------CCeEEEEECCCcccCcccCcCCCccceeEEEEecccCcCCCCcc
Confidence 37899999999 357889998862 3589999999999864211 1 111 11111211 11
Q ss_pred CCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCC-C--ccEEEcCcccCCCCcEEEEEec
Q 005212 323 PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG-K--DNLEIPIVSYYRKGQFMELDTV 389 (709)
Q Consensus 323 ~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg-~--~~i~VPi~~~~~~Gt~I~l~~~ 389 (709)
.-.-|..|+|. ++.-.|+..++|.++++|. .+.++|..| . ..+.+. ..-..+||+|+..++
T Consensus 109 kvSGGlhGvG~-svvNAlS~~~~V~v~r~gk----~~~q~f~~Gg~~~~~l~~~-~~~~~~GT~V~F~PD 172 (637)
T TIGR01058 109 KTAGGLHGVGA-SVVNALSSWLEVTVKRDGQ----IYQQRFENGGKIVQSLKKI-GTTKKTGTLVHFHPD 172 (637)
T ss_pred cccCCcccccc-cccceeeceEEEEEEECCE----EEEEEEecCCcCcCCcccc-cCCCCCceEEEEEeC
Confidence 34568999999 4556699999999997764 345666543 1 112111 122357998877654
No 31
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.00037 Score=80.61 Aligned_cols=154 Identities=18% Similarity=0.169 Sum_probs=93.3
Q ss_pred HHHHHhccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhH--------hhhhh-cccCCCCCCC--C
Q 005212 259 IAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-FGHKQPDADD--P 323 (709)
Q Consensus 259 IaELIDNA~DA----~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-fG~s~k~~~~--~ 323 (709)
+.|.||||+|- .++.|.|.|.. ...|+|.|||.||+-+-= .-+|+ +....|-.++ .
T Consensus 41 v~EVvDNsiDEalaG~~~~I~V~l~~---------d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKFd~~~Yk 111 (635)
T COG0187 41 VWEVVDNSIDEALAGYADRIDVTLHE---------DGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKFDNDSYK 111 (635)
T ss_pred EeEeeechHhHHhhCcCcEEEEEEcC---------CCeEEEEECCCCCccccCCCCCCCceEEEEEeeccCcccCCCccE
Confidence 78999999995 37889998862 578999999999987641 11222 1111121111 2
Q ss_pred CccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCc--cEE-EcCcccCCCCcEEEEEeccchhhhhhhhh
Q 005212 324 NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NLE-IPIVSYYRKGQFMELDTVVQSEATAKYNL 400 (709)
Q Consensus 324 ~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~--~i~-VPi~~~~~~Gt~I~l~~~~e~e~~~e~~L 400 (709)
-.=|..|+|. |..-.|...+.|.+++++. .+.+.|..|.. .+. +-.......||+|...++++-..
T Consensus 112 vSGGLHGVG~-SVVNALS~~l~v~v~r~gk----~y~q~f~~G~~~~~l~~ig~~~~~~~GT~V~F~PD~~iF~------ 180 (635)
T COG0187 112 VSGGLHGVGV-SVVNALSTWLEVEVKRDGK----IYRQRFERGVPVTPLEVIGSTDTKKTGTKVRFKPDPEIFG------ 180 (635)
T ss_pred eecCCCccce-EEEecccceEEEEEEECCE----EEEEEEeCCCcCCCceecccCCCCCCccEEEEEcChHhcC------
Confidence 3458899999 6677899999999999875 34566754422 222 11123345699988776543210
Q ss_pred hhhhhcCCCcchhHHHhhccccCCCCCcEEEEEeccC
Q 005212 401 KSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 437 (709)
Q Consensus 401 ~~I~kySPF~s~~I~e~~~~~~~~~tGT~III~NLrr 437 (709)
-..|....|...+..+.--..|..|.+.+-+.
T Consensus 181 -----~~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~ 212 (635)
T COG0187 181 -----ETEFDYEILKRRLRELAFLNKGVKITLTDERT 212 (635)
T ss_pred -----CcccCHHHHHHHHHHHhccCCCCEEEEEeccC
Confidence 02233333343333333235788888876644
No 32
>PLN03237 DNA topoisomerase 2; Provisional
Probab=97.38 E-value=0.00063 Score=85.30 Aligned_cols=85 Identities=21% Similarity=0.354 Sum_probs=57.4
Q ss_pred HHHHHHHHhcccccC-----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhh----h--hhccc---CCCCC-
Q 005212 256 FGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR----M--TYFGH---KQPDA- 320 (709)
Q Consensus 256 f~AIaELIDNA~DA~-----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~----~--l~fG~---s~k~~- 320 (709)
.-.+-|+|+||.|-. ++.|.|.|+. ....|+|.|||.||+-+--.. . +-||+ +.+..
T Consensus 79 ~kifdEIldNAvDe~~r~g~~~~I~V~I~~--------~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd 150 (1465)
T PLN03237 79 YKIFDEILVNAADNKQRDPKMDSLRVVIDV--------EQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDD 150 (1465)
T ss_pred hhhHHHHhhhhHhHHhhcCCCCEEEEEEEc--------CCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCC
Confidence 344889999999953 4778888863 246899999999998652111 0 11332 22221
Q ss_pred -CCCCccccccceeeeecccccCeEEEEEe
Q 005212 321 -DDPNRIGRFGVGFKTGAMRLGKDALVLTQ 349 (709)
Q Consensus 321 -~~~~~IG~fGiGfKsAsmrLg~~v~V~TK 349 (709)
.-.-.-|+.|+|.+ ..-.|...++|.++
T Consensus 151 ~~yKvSGGlhGVGas-vvNaLS~~f~Vev~ 179 (1465)
T PLN03237 151 NEKKTTGGRNGYGAK-LTNIFSTEFVIETA 179 (1465)
T ss_pred CcceeeccccccCcc-ccccccCeeEEEEE
Confidence 12456799999994 45569999999997
No 33
>PLN03128 DNA topoisomerase 2; Provisional
Probab=97.32 E-value=0.00065 Score=84.23 Aligned_cols=85 Identities=24% Similarity=0.340 Sum_probs=57.3
Q ss_pred HHHHHHHHhcccccC-----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhh----h--hhccc---CCCCC-
Q 005212 256 FGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR----M--TYFGH---KQPDA- 320 (709)
Q Consensus 256 f~AIaELIDNA~DA~-----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~----~--l~fG~---s~k~~- 320 (709)
.-.+-|+|+||.|-. ++.|.|.|+. +...|+|.|||.||+-+--.+ + +-||. +.+..
T Consensus 54 ~ki~dEIldNAvDe~~~~g~~~~I~V~i~~--------~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd 125 (1135)
T PLN03128 54 YKIFDEILVNAADNKQRDPSMDSLKVDIDV--------EQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDD 125 (1135)
T ss_pred HHHHHHHHHHHHHHhhhcCCCcEEEEEEEc--------CCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccCC
Confidence 344889999999954 3778888863 246899999999998652111 0 11222 22221
Q ss_pred -CCCCccccccceeeeecccccCeEEEEEe
Q 005212 321 -DDPNRIGRFGVGFKTGAMRLGKDALVLTQ 349 (709)
Q Consensus 321 -~~~~~IG~fGiGfKsAsmrLg~~v~V~TK 349 (709)
.-.-.-|+.|+|.+ ..-.|+..++|.++
T Consensus 126 ~~ykvSGGlhGvGas-vvNaLS~~f~Vev~ 154 (1135)
T PLN03128 126 NEKKTTGGRNGYGAK-LANIFSTEFTVETA 154 (1135)
T ss_pred ccceeeccccCCCCe-EEEeecCeEEEEEE
Confidence 12356799999995 45569999999998
No 34
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.32 E-value=0.00035 Score=79.66 Aligned_cols=86 Identities=21% Similarity=0.298 Sum_probs=66.5
Q ss_pred cCHHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccc
Q 005212 253 GWIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 327 (709)
Q Consensus 253 ~~~f~AIaELIDNA~DA~A-----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG 327 (709)
.+..+.+.-|||||+||-+ +.|.+.+.. .++...|.|.|||+||+++....++..|.|.|. -+
T Consensus 426 ~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~------~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~------~~ 493 (537)
T COG3290 426 HDLVTILGNLIDNALEALLAPEENKEIELSLSD------RGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN------TG 493 (537)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEe------cCCEEEEEEeCCCCCCChHHHHHHHhcCccccC------CC
Confidence 4577889999999999977 556666653 345678899999999999999999999999875 23
Q ss_pred cccceeee---ecccccCeEEEEEee
Q 005212 328 RFGVGFKT---GAMRLGKDALVLTQT 350 (709)
Q Consensus 328 ~fGiGfKs---AsmrLg~~v~V~TK~ 350 (709)
.-|+|++. ..=++|..++|.+..
T Consensus 494 ~rGiGL~Lvkq~V~~~~G~I~~~s~~ 519 (537)
T COG3290 494 GRGIGLYLVKQLVERLGGSIEVESEK 519 (537)
T ss_pred CCchhHHHHHHHHHHcCceEEEeeCC
Confidence 45888752 223678888888853
No 35
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.23 E-value=0.00072 Score=56.96 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=55.5
Q ss_pred HHHHHHHHhcccccCC---CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccce
Q 005212 256 FGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (709)
Q Consensus 256 f~AIaELIDNA~DA~A---~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiG 332 (709)
..++.||++||+++.+ ..|.|.+.. ..+...+.|.|+|.||++..+...+....+. ......+..|+|
T Consensus 2 ~~~~~~ll~Na~~~~~~~~~~v~i~~~~------~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~---~~~~~~~~~g~g 72 (103)
T cd00075 2 QQVLLNLLSNAIKHTPEGGGRITISVER------DGDHLEIRVEDNGPGIPEEDLERIFERFSDG---SRSRKGGGTGLG 72 (103)
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC---CCCCCCCccccC
Confidence 3579999999999987 445555542 2345678999999999999988765422111 112234567888
Q ss_pred eeeec---ccccCeEEEEEee
Q 005212 333 FKTGA---MRLGKDALVLTQT 350 (709)
Q Consensus 333 fKsAs---mrLg~~v~V~TK~ 350 (709)
++.+. -+.|..+.+.+..
T Consensus 73 l~~~~~~~~~~~g~~~~~~~~ 93 (103)
T cd00075 73 LSIVKKLVELHGGRIEVESEP 93 (103)
T ss_pred HHHHHHHHHHcCCEEEEEeCC
Confidence 86432 1345577776644
No 36
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=97.23 E-value=0.001 Score=77.98 Aligned_cols=117 Identities=20% Similarity=0.220 Sum_probs=72.4
Q ss_pred HHHHHhccccc------C-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhh-----h----hhccc---CCCC
Q 005212 259 IAELVDNSRDA------K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR-----M----TYFGH---KQPD 319 (709)
Q Consensus 259 IaELIDNA~DA------~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~-----~----l~fG~---s~k~ 319 (709)
+.|+||||+|- + ++.|.|.++ ...++|.|||.||+-+--.+ . +-||. +.|-
T Consensus 50 ~~EIldNavDe~~~~~~g~~~~I~V~i~----------dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkF 119 (602)
T PHA02569 50 IDEIIDNSVDEAIRTNFKFANKIDVTIK----------NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNF 119 (602)
T ss_pred eehhhhhhhhhhhccCCCCCcEEEEEEc----------CCEEEEEECCCcccCCcccccccccccceEEEEEeecccccc
Confidence 67999999994 2 567777664 35899999999998643211 0 11222 1222
Q ss_pred C-CCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEcCcccCCCCcEEEEEecc
Q 005212 320 A-DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVV 390 (709)
Q Consensus 320 ~-~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VPi~~~~~~Gt~I~l~~~~ 390 (709)
. .-.-.-|..|+|. +..-.|+..+.|.++..+. .+.++|..|.....++...-..+||.|+..++.
T Consensus 120 d~~ykvSGGlhGVG~-svvNaLS~~~~V~v~~~~~----~~~q~f~~G~~~~~~~~~~~~~~GT~V~F~PD~ 186 (602)
T PHA02569 120 DDTNRVTGGMNGVGS-SLTNFFSVLFIGETCDGKN----EVTVNCSNGAENISWSTKPGKGKGTSVTFIPDF 186 (602)
T ss_pred CCcceeeCCcCCccc-eeeeccchhhheEEEcCCE----EEEEEecCCcccCCcccCCCCCCccEEEEEECH
Confidence 1 1234678999999 5566799999998865543 256677544322222222234579988876643
No 37
>PRK10604 sensor protein RstB; Provisional
Probab=97.09 E-value=0.0012 Score=73.45 Aligned_cols=91 Identities=15% Similarity=0.199 Sum_probs=63.0
Q ss_pred CHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcccccccee
Q 005212 254 WIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGf 333 (709)
.+..++..||+||+.++...|.|.+.. .++.-.|.|.|||.||+++++.+.+.-.+..... ....-|.+|+|+
T Consensus 319 ~l~~vl~NLl~NAik~~~~~I~I~~~~------~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~-~~~~~~g~GLGL 391 (433)
T PRK10604 319 LMERVLDNLLNNALRYAHSRVRVSLLL------DGNQACLIVEDDGPGIPPEERERVFEPFVRLDPS-RDRATGGCGLGL 391 (433)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEE------ECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCC-CCCCCCCccchH
Confidence 356789999999999988888888764 2345679999999999999999987643322211 112235679998
Q ss_pred eee---cccccCeEEEEEeeC
Q 005212 334 KTG---AMRLGKDALVLTQTA 351 (709)
Q Consensus 334 KsA---smrLg~~v~V~TK~~ 351 (709)
..+ .-..|.++.+.+...
T Consensus 392 ~ivk~i~~~~gG~i~v~s~~~ 412 (433)
T PRK10604 392 AIVHSIALAMGGSVNCDESEL 412 (433)
T ss_pred HHHHHHHHHCCCEEEEEecCC
Confidence 422 234677777776543
No 38
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.07 E-value=0.0013 Score=56.41 Aligned_cols=73 Identities=18% Similarity=0.368 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccce
Q 005212 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiG 332 (709)
+..++.||++||+++..+ .+.|.+.. ..+...+.|.|+|.||+.+.+...+..+.+.+. .....+..|+|
T Consensus 6 l~~~~~~l~~n~~~~~~~~~~v~i~~~~------~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~--~~~~~~~~g~g 77 (111)
T smart00387 6 LRQVLSNLLDNAIKYTPEGGRITVTLER------DGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG--RSRKIGGTGLG 77 (111)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC--CCCCCCccccc
Confidence 567899999999999875 66666653 334578999999999999998887654443221 22334567888
Q ss_pred eee
Q 005212 333 FKT 335 (709)
Q Consensus 333 fKs 335 (709)
++.
T Consensus 78 l~~ 80 (111)
T smart00387 78 LSI 80 (111)
T ss_pred HHH
Confidence 854
No 39
>PRK10364 sensor protein ZraS; Provisional
Probab=97.03 E-value=0.0014 Score=72.95 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=59.2
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccc
Q 005212 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGi 331 (709)
.+..++..||+||+++.+ ..|.|.+.. ..+.-.|.|.|||.||+++.+.+++.-+++.+. +..|+
T Consensus 348 ~l~~il~NLl~NA~k~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~-------~g~Gl 414 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIGQHGVISVTASE------SGAGVKISVTDSGKGIAADQLEAIFTPYFTTKA-------EGTGL 414 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEE------eCCeEEEEEEECCCCCCHHHHHHHhCccccCCC-------CCCcc
Confidence 456789999999999854 456666653 233468999999999999999998876665442 12588
Q ss_pred eeeee---cccccCeEEEEEee
Q 005212 332 GFKTG---AMRLGKDALVLTQT 350 (709)
Q Consensus 332 GfKsA---smrLg~~v~V~TK~ 350 (709)
|+..+ .-..|.++.+.+..
T Consensus 415 GL~iv~~~v~~~gG~i~i~s~~ 436 (457)
T PRK10364 415 GLAVVHNIVEQHGGTIQVASQE 436 (457)
T ss_pred cHHHHHHHHHHCCCEEEEEeCC
Confidence 87532 12466777776654
No 40
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.02 E-value=0.0015 Score=71.96 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccceee
Q 005212 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGfK 334 (709)
+..++.+||+||+.++...|.|.+.. ..+.-.|+|.|||.||+++++.+.+.-.++.... .....+.+|+|+.
T Consensus 354 l~~~l~nli~NA~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~-~~~~~~g~GlGL~ 426 (461)
T PRK09470 354 LASALENIVRNALRYSHTKIEVAFSV------DKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEA-RDRESGGTGLGLA 426 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEE------ECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcc-cCCCCCCcchhHH
Confidence 45678999999999988888887763 2344579999999999999998887533332211 1123356788885
Q ss_pred ee---cccccCeEEEEEee
Q 005212 335 TG---AMRLGKDALVLTQT 350 (709)
Q Consensus 335 sA---smrLg~~v~V~TK~ 350 (709)
.+ ....|.++.+.|..
T Consensus 427 iv~~~v~~~~G~l~~~s~~ 445 (461)
T PRK09470 427 IVENAIQQHRGWVKAEDSP 445 (461)
T ss_pred HHHHHHHHCCCEEEEEECC
Confidence 32 22466667776644
No 41
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=96.96 E-value=0.0018 Score=70.99 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=59.7
Q ss_pred CHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcccccccee
Q 005212 254 WIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGf 333 (709)
.+..++..||+||+.++...|.|.+.. ..+.-.|+|.|||.||+++++.+++.-++.... ... .+.+|+|+
T Consensus 331 ~l~~il~NLl~NA~k~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~--~~~-~~g~GlGL 401 (435)
T PRK09467 331 AIKRALANLVVNAARYGNGWIKVSSGT------EGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDS--ARG-SSGTGLGL 401 (435)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEe------cCCEEEEEEEecCCCcCHHHHHHhcCCcccCCC--CCC-CCCeehhH
Confidence 356789999999999998888887763 233457999999999999999988764443221 111 24578887
Q ss_pred eee---cccccCeEEEEEee
Q 005212 334 KTG---AMRLGKDALVLTQT 350 (709)
Q Consensus 334 KsA---smrLg~~v~V~TK~ 350 (709)
.-+ .-..|.++.+.+..
T Consensus 402 ~iv~~i~~~~~g~l~i~~~~ 421 (435)
T PRK09467 402 AIVKRIVDQHNGKVELGNSE 421 (435)
T ss_pred HHHHHHHHHCCCEEEEEECC
Confidence 421 11355666665543
No 42
>PRK09303 adaptive-response sensory kinase; Validated
Probab=96.90 E-value=0.0025 Score=69.97 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccceee
Q 005212 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGfK 334 (709)
+..+|..||+||+.+....-.|.+.... ...+.-.|.|.|||.||+.+++.+++.-.++.+. ....+.+|+|+.
T Consensus 273 l~qvl~NLl~NAik~~~~~~~I~i~~~~---~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~---~~~~~G~GLGL~ 346 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPEGGTITLSMLH---RTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR---DEGTEGYGIGLS 346 (380)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEEe---cCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC---CCCCCcccccHH
Confidence 5578999999999997644344443210 1223457899999999999999998864333222 112245788884
Q ss_pred ee---cccccCeEEEEEeeC
Q 005212 335 TG---AMRLGKDALVLTQTA 351 (709)
Q Consensus 335 sA---smrLg~~v~V~TK~~ 351 (709)
.+ .-.+|.++.|.|...
T Consensus 347 i~~~iv~~~gG~i~v~s~~~ 366 (380)
T PRK09303 347 VCRRIVRVHYGQIWVDSEPG 366 (380)
T ss_pred HHHHHHHHcCCEEEEEecCC
Confidence 32 225777787777654
No 43
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.76 E-value=0.0033 Score=69.68 Aligned_cols=90 Identities=17% Similarity=0.192 Sum_probs=58.0
Q ss_pred CHHHHHHHHHhcccccCCCc--cEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccc
Q 005212 254 WIFGAIAELVDNSRDAKATK--LEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A~~--I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGi 331 (709)
.+..++..|++||+++.... |.|.+.. ..+...|.|.|||.||+++++.+++.-.+..+.. .....|..|+
T Consensus 317 ~l~~vl~NLl~NAik~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~~G~GL 389 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEGTHITVRWQR------VPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKA-RSRQTGGSGL 389 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHhccCcccccCC-CCCCCCCCch
Confidence 46678999999999997644 4444432 2334679999999999999999987633322211 1122345688
Q ss_pred eeeee---cccccCeEEEEEee
Q 005212 332 GFKTG---AMRLGKDALVLTQT 350 (709)
Q Consensus 332 GfKsA---smrLg~~v~V~TK~ 350 (709)
|+..+ .-..|.++.+.|..
T Consensus 390 GL~ivk~iv~~~gG~i~i~s~~ 411 (430)
T PRK11006 390 GLAIVKHALSHHDSRLEIESEV 411 (430)
T ss_pred HHHHHHHHHHHCCCEEEEEecC
Confidence 88432 22466677776654
No 44
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.76 E-value=0.0035 Score=68.67 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=57.4
Q ss_pred CHHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccc
Q 005212 254 WIFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A~--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGi 331 (709)
.+..++.+||+||++++.. .|.|.+.. .++...|+|.|||.||+++.+.+++.-+++.+.... ..-+..|+
T Consensus 353 ~l~~~~~nll~Nai~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~-~~~~g~Gl 425 (457)
T TIGR01386 353 MFRRAISNLLSNALRHTPDGGTITVRIER------RSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARS-NSGEGTGL 425 (457)
T ss_pred HHHHHHHHHHHHHHHcCCCCceEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccC-CCCCCccc
Confidence 3567899999999998743 56666553 334567999999999999999888764443321111 12234788
Q ss_pred eeeee---cccccCeEEEEE
Q 005212 332 GFKTG---AMRLGKDALVLT 348 (709)
Q Consensus 332 GfKsA---smrLg~~v~V~T 348 (709)
|+..+ .-++|..+.+.+
T Consensus 426 GL~i~~~~~~~~~G~~~~~~ 445 (457)
T TIGR01386 426 GLAIVRSIMEAHGGRASAES 445 (457)
T ss_pred cHHHHHHHHHHCCCEEEEEe
Confidence 87532 123566666665
No 45
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.76 E-value=0.003 Score=69.20 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcccccCCCc------cEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcccc
Q 005212 255 IFGAIAELVDNSRDAKATK------LEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~~------I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~ 328 (709)
...++.+|+.||+++.+.. |.|.... ..+.-.|+|.|||.||+.+...++|...++.+.. ..+.
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~------~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~----~~~G 457 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTAL------NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG----SRKH 457 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEe------cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC----CCCC
Confidence 4578999999999985432 4444332 3445689999999999999999888643433321 1233
Q ss_pred ccceeeee---cccccCeEEEEEee
Q 005212 329 FGVGFKTG---AMRLGKDALVLTQT 350 (709)
Q Consensus 329 fGiGfKsA---smrLg~~v~V~TK~ 350 (709)
-|+|+..+ .-.+|.++.|.|..
T Consensus 458 ~GlGL~i~~~iv~~~gG~i~~~s~~ 482 (494)
T TIGR02938 458 IGMGLSVAQEIVADHGGIIDLDDDY 482 (494)
T ss_pred CcccHHHHHHHHHHcCCEEEEEECC
Confidence 57887532 11467777776644
No 46
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.74 E-value=0.0037 Score=70.34 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcccccCC----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcccccc
Q 005212 255 IFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFG 330 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fG 330 (709)
+..++.+|++||+++.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+++.-+++.+. +..|
T Consensus 434 l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~-------~g~G 500 (542)
T PRK11086 434 LITILGNLIENALEAVGGEEGGEISVSLHY------RNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKG-------SNRG 500 (542)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHHhCCCccCC-------CCCc
Confidence 56789999999999843 345665542 334567899999999999999998875555442 1248
Q ss_pred ceeeee---cccccCeEEEEEe
Q 005212 331 VGFKTG---AMRLGKDALVLTQ 349 (709)
Q Consensus 331 iGfKsA---smrLg~~v~V~TK 349 (709)
+|+..+ .-..|..+.|.+.
T Consensus 501 lGL~iv~~iv~~~~G~i~v~s~ 522 (542)
T PRK11086 501 VGLYLVKQSVENLGGSIAVESE 522 (542)
T ss_pred CcHHHHHHHHHHcCCEEEEEeC
Confidence 887432 1245666666664
No 47
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=96.67 E-value=0.006 Score=73.70 Aligned_cols=117 Identities=20% Similarity=0.246 Sum_probs=73.7
Q ss_pred HHHHHhccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhh--------hhh-------cccCC--
Q 005212 259 IAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-------FGHKQ-- 317 (709)
Q Consensus 259 IaELIDNA~DA----~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-------fG~s~-- 317 (709)
+-|+||||+|- .++.|.|.|.. ...++|.|||.||+-+.-.+ +|+ |+...
T Consensus 134 v~EIlDNSVDE~laG~~~~I~V~i~~---------DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~ 204 (903)
T PTZ00109 134 LFEILDNSVDEYLAGECNKITVVLHK---------DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTFPK 204 (903)
T ss_pred EEEEeeccchhhccCCCcEEEEEEcC---------CCeEEEEeCCccccccccccCCCcceeEEEEEeccCccccCcccc
Confidence 78999999994 25788888762 36899999999998643211 111 22110
Q ss_pred -----------------C-----------C--C--CC--CCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeec
Q 005212 318 -----------------P-----------D--A--DD--PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSL 363 (709)
Q Consensus 318 -----------------k-----------~--~--~~--~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf 363 (709)
| . . .+ .-.-|..|+|. ++.-.|...+.|.++++|. .+.++|
T Consensus 205 ~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~-SVVNALS~~l~VeV~RdGK----~y~q~F 279 (903)
T PTZ00109 205 NSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGL-SVVNALSSFLKVDVFKGGK----IYSIEL 279 (903)
T ss_pred cccccccccccccccccccccccccccccccccccCCcceecCcCCCcce-eeeeeccCeEEEEEEECCE----EEEEEe
Confidence 0 0 0 00 23678999999 6677799999999999875 456777
Q ss_pred cCCCc--cEEEcCcccCCCCcEEEEEec
Q 005212 364 NQGKD--NLEIPIVSYYRKGQFMELDTV 389 (709)
Q Consensus 364 ~eg~~--~i~VPi~~~~~~Gt~I~l~~~ 389 (709)
..|.- .+.+--.+-...||+|...++
T Consensus 280 ~rG~~v~pLkvig~~~~~tGT~VtF~PD 307 (903)
T PTZ00109 280 SKGKVTKPLSVFSCPLKKRGTTIHFLPD 307 (903)
T ss_pred CCCcccCCccccCCcCCCCceEEEEEeC
Confidence 54421 111111111347999877654
No 48
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.64 E-value=0.0041 Score=70.65 Aligned_cols=86 Identities=17% Similarity=0.237 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcccccC------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcccc
Q 005212 255 IFGAIAELVDNSRDAK------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~------A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~ 328 (709)
+...+.+|++||+++. ...|.|.+.. ..+.-.|.|.|||.||++++..+++..|++.+.. .-|.
T Consensus 433 l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~----~~~g 502 (545)
T PRK15053 433 FAAIVGNLLDNAFEASLRSDEGNKIVELFLSD------EGDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD----EPGE 502 (545)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCceEEEEEEE------CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC----CCCC
Confidence 4567899999999983 3456666553 2345678999999999999999988877765431 1234
Q ss_pred ccceeeee---cccccCeEEEEEee
Q 005212 329 FGVGFKTG---AMRLGKDALVLTQT 350 (709)
Q Consensus 329 fGiGfKsA---smrLg~~v~V~TK~ 350 (709)
.|+|+..+ .-..|..+.|.|..
T Consensus 503 ~GlGL~ivk~iv~~~~G~i~v~s~~ 527 (545)
T PRK15053 503 HGIGLYLIASYVTRCGGVITLEDND 527 (545)
T ss_pred ceeCHHHHHHHHHHcCCEEEEEECC
Confidence 58888432 11355666666643
No 49
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.61 E-value=0.006 Score=63.23 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=57.9
Q ss_pred CHHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccc
Q 005212 254 WIFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A~--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGi 331 (709)
.+..++.+||.||+++... .|.|.+.. ..+...|.|.|||.||+++.+.+++...+..+.. .....+..|+
T Consensus 229 ~l~~vl~nll~Nai~~~~~~~~i~i~~~~------~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~-~~~~~~g~gl 301 (333)
T TIGR02966 229 ELRSAFSNLVSNAIKYTPEGGTITVRWRR------DGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKS-RSRDTGGTGL 301 (333)
T ss_pred HHHHHHHHHHHHhheeCCCCCeEEEEEEE------cCCEEEEEEEecCCCCCHHHHhhhccCceecCcc-cccCCCCCcc
Confidence 3567899999999998754 45554442 2234679999999999999999887644322211 0111233588
Q ss_pred eeeee---cccccCeEEEEEee
Q 005212 332 GFKTG---AMRLGKDALVLTQT 350 (709)
Q Consensus 332 GfKsA---smrLg~~v~V~TK~ 350 (709)
|++.+ .-..|.++.+.|..
T Consensus 302 GL~~~~~~~~~~gG~i~~~s~~ 323 (333)
T TIGR02966 302 GLAIVKHVLSRHHARLEIESEL 323 (333)
T ss_pred cHHHHHHHHHHCCCEEEEEecC
Confidence 88542 12467777777754
No 50
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.57 E-value=0.0037 Score=63.42 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=46.8
Q ss_pred cCHHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCC
Q 005212 253 GWIFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQP 318 (709)
Q Consensus 253 ~~~f~AIaELIDNA~DA~A-~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k 318 (709)
.+...++..||+||++|.. ..|.|.+.. ..+.-.|.|.|||.||+++.+..++..+++.+
T Consensus 227 ~~l~~vl~nLi~NAi~~~~~~~i~i~~~~------~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~ 287 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTPGGEITISVRQ------DDEQVTISVEDTGPGIPEEELERIFEPFFRTD 287 (336)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEEEEEe------cCCeEEEEEEcCCCCCCHHHHHHhccCeeccC
Confidence 3566789999999999994 777777763 12246899999999999999888876555544
No 51
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.53 E-value=0.0054 Score=67.42 Aligned_cols=89 Identities=21% Similarity=0.237 Sum_probs=59.6
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccc
Q 005212 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGi 331 (709)
.+..++.+||.||+.+.. ..|.|.+.. .++...|+|.|||.||+++++.+.+.-.++.+.. ...-+..|+
T Consensus 368 ~l~~vl~nli~Na~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~--~~~~~~~Gl 439 (475)
T PRK11100 368 LLRQALGNLLDNAIDFSPEGGTITLSAEV------DGEQVALSVEDQGPGIPDYALPRIFERFYSLPRP--ANGRKSTGL 439 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCC--CCCCCCcch
Confidence 567889999999999864 456666653 3345679999999999999999887644432211 111234588
Q ss_pred eeeee---cccccCeEEEEEee
Q 005212 332 GFKTG---AMRLGKDALVLTQT 350 (709)
Q Consensus 332 GfKsA---smrLg~~v~V~TK~ 350 (709)
|++.+ ...+|..+.+.|..
T Consensus 440 GL~i~~~~~~~~~G~i~i~s~~ 461 (475)
T PRK11100 440 GLAFVREVARLHGGEVTLRNRP 461 (475)
T ss_pred hHHHHHHHHHHCCCEEEEEEcC
Confidence 87532 12466667776654
No 52
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.44 E-value=0.013 Score=74.00 Aligned_cols=121 Identities=19% Similarity=0.239 Sum_probs=76.1
Q ss_pred HHHHHHHHhcccccC--------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhh--h----hhccc---CCC
Q 005212 256 FGAIAELVDNSRDAK--------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--M----TYFGH---KQP 318 (709)
Q Consensus 256 f~AIaELIDNA~DA~--------A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--~----l~fG~---s~k 318 (709)
.-.+-|+|+||.|-. ++.|.|.|+. +...|+|.|||.||+-+--.. + +-||+ +.+
T Consensus 59 ~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~--------d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgk 130 (1388)
T PTZ00108 59 YKIFDEILVNAADNKARDKGGHRMTYIKVTIDE--------ENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSN 130 (1388)
T ss_pred hhhHHHHhhhhhhhhcccCCCCCccEEEEEEec--------cCCeEEEEecCCcccCCCCCCCCCccceEEEEEeecccc
Confidence 344889999999952 4678888873 236899999999998642111 0 11333 222
Q ss_pred CC--CCCCccccccceeeeecccccCeEEEEEeeC--CCCceeEEEeeccCCCccEEEcCc-cc-C-CCCcEEEEEec
Q 005212 319 DA--DDPNRIGRFGVGFKTGAMRLGKDALVLTQTA--DSRSIAFLSQSLNQGKDNLEIPIV-SY-Y-RKGQFMELDTV 389 (709)
Q Consensus 319 ~~--~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~--g~~svg~ls~tf~eg~~~i~VPi~-~~-~-~~Gt~I~l~~~ 389 (709)
.. .-.-.-|+.|+|.+ ..-.|...+.|.++.. +. .+.++|..|.....-|.. +. . .+||.|+..+.
T Consensus 131 fdd~~yKvSGGlhGVGas-vvNalS~~f~Vev~r~~~gk----~y~q~f~~Gm~~~~~p~i~~~~~~~~GT~VtF~PD 203 (1388)
T PTZ00108 131 YDDTEKRVTGGRNGFGAK-LTNIFSTKFTVECVDSKSGK----KFKMTWTDNMSKKSEPRITSYDGKKDYTKVTFYPD 203 (1388)
T ss_pred CCCCceeeecccccCCcc-ccccccceEEEEEEECCCCC----EEEEEecCCCcCCCCCccCCCCCCCCceEEEEEeC
Confidence 21 12456799999994 4566999999999987 54 355666544211112221 22 2 47898877654
No 53
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.44 E-value=0.0063 Score=67.34 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccce
Q 005212 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiG 332 (709)
+..++.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.-.++.+.. .....|..|+|
T Consensus 353 l~qvl~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~-~~~~~~g~GlG 425 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDSGGSLHISAEQ------RDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGS-RNRASGGSGLG 425 (466)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEE------cCCEEEEEEEecCCCcCHHHHHHhccCcccCCCC-cCCCCCCCcHH
Confidence 557899999999998654 45665543 3345678999999999999998887533322211 11234557888
Q ss_pred eeee---cccccCeEEEEEee
Q 005212 333 FKTG---AMRLGKDALVLTQT 350 (709)
Q Consensus 333 fKsA---smrLg~~v~V~TK~ 350 (709)
+..+ .-+.|.++.+.+..
T Consensus 426 L~iv~~i~~~~~G~l~~~s~~ 446 (466)
T PRK10549 426 LAICLNIVEAHNGRIIAAHSP 446 (466)
T ss_pred HHHHHHHHHHcCCEEEEEECC
Confidence 8532 22466677776654
No 54
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.34 E-value=0.0066 Score=71.82 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHh-HhhhhhcccCCCCCCCCCccccccc
Q 005212 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD-VVRMTYFGHKQPDADDPNRIGRFGV 331 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee-L~~~l~fG~s~k~~~~~~~IG~fGi 331 (709)
...++.+||+||+++.. ..|.|.+.. .++.-.|.|.|||.||+++. ..+.+....+.+. +..|+
T Consensus 580 l~~vl~nLl~NAik~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~-------~G~GL 646 (679)
T TIGR02916 580 LERVLGHLVQNALEATPGEGRVAIRVER------ECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG-------AGMGI 646 (679)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEE------cCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC-------CCcch
Confidence 45679999999999964 357776653 23456799999999999998 5666654443331 34588
Q ss_pred eeeee---cccccCeEEEEEee
Q 005212 332 GFKTG---AMRLGKDALVLTQT 350 (709)
Q Consensus 332 GfKsA---smrLg~~v~V~TK~ 350 (709)
|+..+ .-.+|.++.|.|..
T Consensus 647 GL~i~~~iv~~~gG~i~v~s~~ 668 (679)
T TIGR02916 647 GVYECRQYVEEIGGRIEVESTP 668 (679)
T ss_pred hHHHHHHHHHHcCCEEEEEecC
Confidence 87533 12467777777654
No 55
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.14 E-value=0.0089 Score=64.15 Aligned_cols=87 Identities=14% Similarity=0.225 Sum_probs=60.0
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccc
Q 005212 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGi 331 (709)
++..++..||+||+.+.. ..|.|.+.. .++.-.|.|.|||.||+++++.+++.-++.... .-+..|+
T Consensus 247 ~l~~il~nLi~NA~k~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~g~Gl 315 (356)
T PRK10755 247 LLRLLLRNLVENAHRYSPEGSTITIKLSQ------EDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS-----RYGGIGL 315 (356)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC-----CCCCcCH
Confidence 566789999999999864 457776653 334568999999999999999988764432211 1234688
Q ss_pred eeeee---cccccCeEEEEEeeC
Q 005212 332 GFKTG---AMRLGKDALVLTQTA 351 (709)
Q Consensus 332 GfKsA---smrLg~~v~V~TK~~ 351 (709)
|++.+ .-.+|..+.+.|...
T Consensus 316 GL~i~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 316 GLSIVSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred HHHHHHHHHHHCCCEEEEEECCC
Confidence 87532 224677777777553
No 56
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.11 E-value=0.011 Score=67.54 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccceee
Q 005212 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGfK 334 (709)
...++..||+||+++....+.|.+.. .++.-.|.|.|||.||+++++.+.+.-++.... ..+..|+|+.
T Consensus 379 l~~vl~NLi~NAik~~~~~i~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~-----~~~G~GLGL~ 447 (485)
T PRK10815 379 FMEVMGNVLDNACKYCLEFVEISARQ------TDEHLHIVVEDDGPGIPESKRELIFDRGQRADT-----LRPGQGLGLS 447 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEE------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCC-----CCCCcchhHH
Confidence 46789999999999988888887753 234457999999999999999888764433221 1123688885
Q ss_pred ee---cccccCeEEEEEee
Q 005212 335 TG---AMRLGKDALVLTQT 350 (709)
Q Consensus 335 sA---smrLg~~v~V~TK~ 350 (709)
.+ .-..|.++.+.+..
T Consensus 448 Ivk~iv~~~gG~i~v~s~~ 466 (485)
T PRK10815 448 VAREITEQYEGKISAGDSP 466 (485)
T ss_pred HHHHHHHHcCCEEEEEECC
Confidence 32 11456666665543
No 57
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=95.87 E-value=0.018 Score=68.93 Aligned_cols=92 Identities=14% Similarity=0.238 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcccccccee
Q 005212 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A-~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGf 333 (709)
+..++..||+||+++.. ..|.|.+... ..+.-.|.|.|||.||+++++.++|...+..+........+.-|+|+
T Consensus 399 l~qvl~NLl~NAik~~~~g~v~i~~~~~-----~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL 473 (779)
T PRK11091 399 LRQILWNLISNAVKFTQQGGVTVRVRYE-----EGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGL 473 (779)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEEc-----cCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHH
Confidence 56789999999999864 4566666531 13346789999999999999999886333332111222345567787
Q ss_pred eee---cccccCeEEEEEeeC
Q 005212 334 KTG---AMRLGKDALVLTQTA 351 (709)
Q Consensus 334 KsA---smrLg~~v~V~TK~~ 351 (709)
..+ .-..|.++.|.|...
T Consensus 474 ~i~~~iv~~~gG~i~v~s~~g 494 (779)
T PRK11091 474 AVSKRLAQAMGGDITVTSEEG 494 (779)
T ss_pred HHHHHHHHHcCCEEEEEecCC
Confidence 422 124788888888654
No 58
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=95.83 E-value=0.019 Score=69.39 Aligned_cols=87 Identities=10% Similarity=0.175 Sum_probs=59.9
Q ss_pred CHHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccce
Q 005212 254 WIFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A-~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiG 332 (709)
.+..+|..||+||+++.. ..|.|.+.. ..+.-.|+|.|||.||+++++.+.+...+..+. ..|..|+|
T Consensus 513 ~l~~il~NLl~NAik~~~~g~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~-----~~~g~GLG 581 (921)
T PRK15347 513 RLRQILVNLLGNAVKFTETGGIRLRVKR------HEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADT-----HSQGTGLG 581 (921)
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCC-----CCCCCchH
Confidence 356789999999999854 457777653 234567999999999999999988753332221 12446888
Q ss_pred eeeec---ccccCeEEEEEeeC
Q 005212 333 FKTGA---MRLGKDALVLTQTA 351 (709)
Q Consensus 333 fKsAs---mrLg~~v~V~TK~~ 351 (709)
+..+- -.+|.++.|.|...
T Consensus 582 L~i~~~~~~~~gG~i~i~s~~~ 603 (921)
T PRK15347 582 LTIASSLAKMMGGELTLFSTPG 603 (921)
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 84321 24677888877654
No 59
>PRK10337 sensor protein QseC; Provisional
Probab=95.68 E-value=0.02 Score=63.21 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccceee
Q 005212 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGfK 334 (709)
+..++..||+||+.+....-.|.+... ...|+|.|||.||+++++.+.+.-.+..+. ...+.+|+|+.
T Consensus 353 l~~vl~Nli~NA~k~~~~~~~i~i~~~--------~~~i~i~D~G~Gi~~~~~~~if~~f~~~~~----~~~~g~GlGL~ 420 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQGSVVDVTLN--------ARNFTVRDNGPGVTPEALARIGERFYRPPG----QEATGSGLGLS 420 (449)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEE--------eeEEEEEECCCCCCHHHHHHhcccccCCCC----CCCCccchHHH
Confidence 556899999999998765444444321 237999999999999999988753332211 12244788875
Q ss_pred ee---cccccCeEEEEEee
Q 005212 335 TG---AMRLGKDALVLTQT 350 (709)
Q Consensus 335 sA---smrLg~~v~V~TK~ 350 (709)
.+ .-+.|.++.+.+..
T Consensus 421 iv~~i~~~~gg~l~~~s~~ 439 (449)
T PRK10337 421 IVRRIAKLHGMNVSFGNAP 439 (449)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 32 22456677666643
No 60
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=95.62 E-value=0.022 Score=69.10 Aligned_cols=90 Identities=16% Similarity=0.179 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceecc---------CCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCC
Q 005212 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKK---------AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP 323 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A--~~I~I~I~~~~~~~---------~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~ 323 (709)
+..++..||+||+++.. ..|.|.+....... ..++.-.|.|.|||.||+++++.+++...++.+.
T Consensus 561 L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~---- 636 (828)
T PRK13837 561 LQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA---- 636 (828)
T ss_pred HHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC----
Confidence 56789999999999854 45666665310000 0123457899999999999999988764443321
Q ss_pred Cccccccceeeee---cccccCeEEEEEeeC
Q 005212 324 NRIGRFGVGFKTG---AMRLGKDALVLTQTA 351 (709)
Q Consensus 324 ~~IG~fGiGfKsA---smrLg~~v~V~TK~~ 351 (709)
+..|+|+..+ .-..|.++.|.|...
T Consensus 637 ---~G~GLGL~i~~~iv~~~gG~i~v~s~~g 664 (828)
T PRK13837 637 ---GGTGLGLATVHGIVSAHAGYIDVQSTVG 664 (828)
T ss_pred ---CCCcchHHHHHHHHHHCCCEEEEEecCC
Confidence 4568887432 225778888877643
No 61
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=95.57 E-value=0.024 Score=63.67 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcccccCCCc--cEEEEEeceeccCCCCc-CEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccc
Q 005212 255 IFGAIAELVDNSRDAKATK--LEISIESIYFKKAGKDI-PMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~~--I~I~I~~~~~~~~~~~~-~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGi 331 (709)
+..++.+|++||+.+.... |.|.+.. ..+. ..|.|.|||.||+++++.+.+..+.+.+. +..|+
T Consensus 501 l~~~~~nli~na~~~~~~~~~i~v~~~~------~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~-------~g~gl 567 (607)
T PRK11360 501 LKQVLLNILINAVQAISARGKIRIRTWQ------YSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKA-------KGTGL 567 (607)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEEE------cCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCC-------CCCch
Confidence 5678999999999986554 4444432 1223 78999999999999999887765443331 13477
Q ss_pred eeeee---cccccCeEEEEEeeC
Q 005212 332 GFKTG---AMRLGKDALVLTQTA 351 (709)
Q Consensus 332 GfKsA---smrLg~~v~V~TK~~ 351 (709)
|+... .-.+|.++.+.|...
T Consensus 568 GL~~~~~~~~~~~G~i~~~s~~~ 590 (607)
T PRK11360 568 GLALSQRIINAHGGDIEVESEPG 590 (607)
T ss_pred hHHHHHHHHHHcCCEEEEEEcCC
Confidence 76432 224677777777543
No 62
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=95.51 E-value=0.019 Score=66.43 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=45.5
Q ss_pred CHHHHHHHHHhcccccCC----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh-cccC
Q 005212 254 WIFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHK 316 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~s 316 (709)
-+...+--||.||+||-+ ..|.|.... .++.-.|+|.|||.|+.++-+.++|. |-++
T Consensus 497 RLeQVLvNLl~NALDA~~~~~~~~i~i~~~~------~~~~v~l~VrDnGpGi~~e~~~~lFePF~Tt 558 (603)
T COG4191 497 RLEQVLVNLLQNALDAMAGQEDRRLSIRAQR------EGGQVVLTVRDNGPGIAPEALPHLFEPFFTT 558 (603)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeeEEEEEe------cCCeEEEEEccCCCCCCHHHHHhhcCCcccc
Confidence 477889999999999964 466666653 45567899999999999999999987 4443
No 63
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=95.42 E-value=0.032 Score=59.35 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=54.2
Q ss_pred CHHHHHHHHHhcccccC-CC--ccEEEEEeceeccCCCC----cCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcc
Q 005212 254 WIFGAIAELVDNSRDAK-AT--KLEISIESIYFKKAGKD----IPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRI 326 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~-A~--~I~I~I~~~~~~~~~~~----~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~I 326 (709)
.+..++..||+||+++. .. .|.|.+..........+ ...|.|.|||.||+++...+++.-+++.+.
T Consensus 237 ~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~------- 309 (348)
T PRK11073 237 QIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE------- 309 (348)
T ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC-------
Confidence 35678999999999985 33 34443321000000001 135899999999999988887754443331
Q ss_pred ccccceeee---ecccccCeEEEEEeeC
Q 005212 327 GRFGVGFKT---GAMRLGKDALVLTQTA 351 (709)
Q Consensus 327 G~fGiGfKs---AsmrLg~~v~V~TK~~ 351 (709)
+.-|+|+.. ..-..|.++.|.|...
T Consensus 310 ~g~GlGL~i~~~iv~~~gG~i~~~s~~~ 337 (348)
T PRK11073 310 GGTGLGLSIARNLIDQHSGKIEFTSWPG 337 (348)
T ss_pred CCccCCHHHHHHHHHHcCCeEEEEecCC
Confidence 224777742 2224677777776543
No 64
>PRK09835 sensor kinase CusS; Provisional
Probab=95.29 E-value=0.04 Score=61.14 Aligned_cols=89 Identities=11% Similarity=0.102 Sum_probs=57.2
Q ss_pred CHHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccc
Q 005212 254 WIFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A~--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGi 331 (709)
.+..++.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++...+.-.++.... ....-+..|+
T Consensus 375 ~l~~vl~nll~Na~~~~~~~~~I~i~~~~------~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~-~~~~~~g~Gl 447 (482)
T PRK09835 375 MLRRAISNLLSNALRYTPAGEAITVRCQE------VDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPS-RQRKGEGSGI 447 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEE------eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCC-CCCCCCCcch
Confidence 3667899999999998643 46666653 2334679999999999999998877532221110 1112245788
Q ss_pred eeeee---cccccCeEEEEEe
Q 005212 332 GFKTG---AMRLGKDALVLTQ 349 (709)
Q Consensus 332 GfKsA---smrLg~~v~V~TK 349 (709)
|+.-+ .-..|.++.+.|.
T Consensus 448 GL~i~~~i~~~~~g~i~~~s~ 468 (482)
T PRK09835 448 GLAIVKSIVVAHKGTVAVTSD 468 (482)
T ss_pred HHHHHHHHHHHCCCEEEEEEC
Confidence 88432 2246677777664
No 65
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=95.23 E-value=0.051 Score=50.79 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=48.6
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcccc
Q 005212 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~-----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~ 328 (709)
.+..|+.||+.||+..+ ...|.|.+.. ..+...+.|.|+|.||+. +.+.+....+.+. ..+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~------~~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~-----~~~~ 105 (137)
T TIGR01925 39 DIKTAVSEAVTNAIIHGYEENCEGVVYISATI------EDHEVYITVRDEGIGIEN--LEEAREPLYTSKP-----ELER 105 (137)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEEE------eCCEEEEEEEEcCCCcCc--hhHhhCCCcccCC-----CCCC
Confidence 45678999999999754 2456666653 234567899999999973 3343332222221 1133
Q ss_pred ccceeeeecccccCeEEEEEe
Q 005212 329 FGVGFKTGAMRLGKDALVLTQ 349 (709)
Q Consensus 329 fGiGfKsAsmrLg~~v~V~TK 349 (709)
.|+|+.. .-+++.++.+.+.
T Consensus 106 ~GlGL~l-v~~~~~~l~~~~~ 125 (137)
T TIGR01925 106 SGMGFTV-MENFMDDVSVDSE 125 (137)
T ss_pred CcccHHH-HHHhCCcEEEEEC
Confidence 5777742 2235555655553
No 66
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=95.21 E-value=0.041 Score=66.74 Aligned_cols=87 Identities=14% Similarity=0.200 Sum_probs=59.4
Q ss_pred CHHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccce
Q 005212 254 WIFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A-~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiG 332 (709)
.+..++..||+||+.+.. ..|.|.+.. ..+...|.|.|||.||+++++.+.+...+... ...|..|+|
T Consensus 561 ~l~qil~NLl~NAik~~~~g~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-----~~~~g~GLG 629 (914)
T PRK11466 561 RIRQVITNLLSNALRFTDEGSIVLRSRT------DGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVS-----GKRGGTGLG 629 (914)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEE------cCCEEEEEEEECCCCCCHHHHHHHhchhhcCC-----CCCCCCccc
Confidence 355679999999999864 456666542 23346799999999999999998875333221 112456888
Q ss_pred eeee---cccccCeEEEEEeeC
Q 005212 333 FKTG---AMRLGKDALVLTQTA 351 (709)
Q Consensus 333 fKsA---smrLg~~v~V~TK~~ 351 (709)
+..+ .-.+|.++.|.|...
T Consensus 630 L~i~~~l~~~~gG~i~v~s~~~ 651 (914)
T PRK11466 630 LTISSRLAQAMGGELSATSTPE 651 (914)
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 7432 225788888888654
No 67
>PRK10547 chemotaxis protein CheA; Provisional
Probab=95.17 E-value=0.045 Score=65.24 Aligned_cols=88 Identities=19% Similarity=0.324 Sum_probs=56.1
Q ss_pred HHHHHHHHhcccccCC--------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhh------------
Q 005212 256 FGAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR------------ 309 (709)
Q Consensus 256 f~AIaELIDNA~DA~A--------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~------------ 309 (709)
..+|..||.||+|++- ..|.|.... .++.-.|.|.|||.||+++.+.+
T Consensus 387 ~dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~------~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ 460 (670)
T PRK10547 387 IDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEH------QGGNICIEVTDDGAGLNRERILAKAASQGLAVSEN 460 (670)
T ss_pred HHHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCcccc
Confidence 3447799999999862 245565542 23456789999999999987642
Q ss_pred ---------hhhcccCCCCCCCCCccccccceee---eecccccCeEEEEEeeC
Q 005212 310 ---------MTYFGHKQPDADDPNRIGRFGVGFK---TGAMRLGKDALVLTQTA 351 (709)
Q Consensus 310 ---------~l~fG~s~k~~~~~~~IG~fGiGfK---sAsmrLg~~v~V~TK~~ 351 (709)
.|.-|++.+.. .....-.|+|+. ...-.+|..+.|.|...
T Consensus 461 ls~~e~~~lIF~pgfst~~~--~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g 512 (670)
T PRK10547 461 MSDEEVGMLIFAPGFSTAEQ--VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQG 512 (670)
T ss_pred CCHHHHHHHhhcCCcccccc--cccCCCCchhHHHHHHHHHHcCCEEEEEecCC
Confidence 23345554421 122344688884 22335788888888653
No 68
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=95.12 E-value=0.05 Score=65.14 Aligned_cols=90 Identities=16% Similarity=0.174 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccce
Q 005212 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiG 332 (709)
+..++..||+||+++... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.-..+.+.. .....+..|+|
T Consensus 598 L~~il~NLI~NAik~s~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~-~~~~~~g~GLG 670 (703)
T TIGR03785 598 IAQMLDKLVDNAREFSPEDGLIEVGLSQ------NKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQ-GAQDQPHLGLG 670 (703)
T ss_pred HHHHHHHHHHHHHHHCCCCCeEEEEEEE------cCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCC-CCCCCCCccHH
Confidence 557799999999998643 45665542 2345679999999999999999988644433211 11122347888
Q ss_pred eeee---cccccCeEEEEEeeC
Q 005212 333 FKTG---AMRLGKDALVLTQTA 351 (709)
Q Consensus 333 fKsA---smrLg~~v~V~TK~~ 351 (709)
++.+ ....|.++.+.+...
T Consensus 671 L~Ivr~Iv~~~gG~I~v~s~~~ 692 (703)
T TIGR03785 671 LYIVRLIADFHQGRIQAENRQQ 692 (703)
T ss_pred HHHHHHHHHHcCCEEEEEECCC
Confidence 8543 224667777766543
No 69
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=95.03 E-value=0.047 Score=66.51 Aligned_cols=88 Identities=16% Similarity=0.262 Sum_probs=60.2
Q ss_pred CHHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCc-CEEEEEeCCCCCCHHhHhhhhh-cccCCCCCCCCCcccccc
Q 005212 254 WIFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDI-PMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFG 330 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A-~~I~I~I~~~~~~~~~~~~-~~L~I~DNG~GMt~eeL~~~l~-fG~s~k~~~~~~~IG~fG 330 (709)
.+..++..||+||+.+.. ..|.|.+.. ..+. -.|.|.|+|.||+++++.+++. |.... . ....|..|
T Consensus 579 ~l~~il~nLi~NAik~~~~g~i~i~~~~------~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-~---~~~~~g~G 648 (968)
T TIGR02956 579 RIRQVLINLVGNAIKFTDRGSVVLRVSL------NDDSSLLFEVEDTGCGIAEEEQATLFDAFTQAD-G---RRRSGGTG 648 (968)
T ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEEEE------cCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccC-C---CCCCCCcc
Confidence 356779999999999864 456776653 2233 6799999999999999998875 33322 1 12235568
Q ss_pred ceeeee---cccccCeEEEEEeeC
Q 005212 331 VGFKTG---AMRLGKDALVLTQTA 351 (709)
Q Consensus 331 iGfKsA---smrLg~~v~V~TK~~ 351 (709)
+|+..+ .-.+|.++.|.|...
T Consensus 649 LGL~i~~~l~~~~gG~i~~~s~~~ 672 (968)
T TIGR02956 649 LGLAISQRLVEAMDGELGVESELG 672 (968)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCC
Confidence 888532 225778888887654
No 70
>PRK10490 sensor protein KdpD; Provisional
Probab=94.92 E-value=0.047 Score=67.12 Aligned_cols=89 Identities=12% Similarity=0.127 Sum_probs=58.1
Q ss_pred CHHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccc
Q 005212 254 WIFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A~--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGi 331 (709)
.+..++..||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++.+++.-.++.+. ....+-.|+
T Consensus 778 ~L~qVL~NLL~NAik~s~~g~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~---~~~~~G~GL 848 (895)
T PRK10490 778 LFERVLINLLENAVKYAGAQAEIGIDAHV------EGERLQLDVWDNGPGIPPGQEQLIFDKFARGNK---ESAIPGVGL 848 (895)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHhcCCCccCCC---CCCCCCccH
Confidence 3567899999999998654 45555542 234567999999999999999888763332221 112234678
Q ss_pred eeeee---cccccCeEEEEEeeC
Q 005212 332 GFKTG---AMRLGKDALVLTQTA 351 (709)
Q Consensus 332 GfKsA---smrLg~~v~V~TK~~ 351 (709)
|+..+ .-..|.++.+.|...
T Consensus 849 GL~Ivk~ive~hGG~I~v~s~~~ 871 (895)
T PRK10490 849 GLAICRAIVEVHGGTIWAENRPE 871 (895)
T ss_pred HHHHHHHHHHHcCCEEEEEECCC
Confidence 87432 114677777777543
No 71
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=94.67 E-value=0.072 Score=65.72 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcccccccee
Q 005212 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A-~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGf 333 (709)
+..+|..||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+++++.+++...+..... .....+-.|+|+
T Consensus 563 L~qvl~NLl~NAik~t~~G~I~I~v~~------~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~-~~~~~~GtGLGL 635 (924)
T PRK10841 563 LQQVISNLLSNAIKFTDTGCIVLHVRV------DGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTG-VQRNFQGTGLGL 635 (924)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEE------eCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCC-CCCCCCCeehhH
Confidence 55789999999999854 346665543 2345678999999999999999887532221110 111223468888
Q ss_pred eee---cccccCeEEEEEeeC
Q 005212 334 KTG---AMRLGKDALVLTQTA 351 (709)
Q Consensus 334 KsA---smrLg~~v~V~TK~~ 351 (709)
..+ .-.+|.++.|.|...
T Consensus 636 ~I~k~lv~~~gG~I~v~S~~g 656 (924)
T PRK10841 636 AICEKLINMMDGDISVDSEPG 656 (924)
T ss_pred HHHHHHHHHCCCEEEEEEcCC
Confidence 532 124788888888654
No 72
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=94.46 E-value=0.09 Score=63.58 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh-cccCCCCCCCCCccccccce
Q 005212 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 332 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A-~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~s~k~~~~~~~IG~fGiG 332 (709)
+..++..||+||+.+.. ..|.|.+.... .......-.|.|.|||.||+++++.+.+. |-...+. .....|..|+|
T Consensus 409 l~~vl~NLl~NAik~~~~g~v~i~v~~~~-~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~~~~g~GLG 485 (919)
T PRK11107 409 LQQIITNLVGNAIKFTESGNIDILVELRA-LSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADAS--ISRRHGGTGLG 485 (919)
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEEEe-cCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCC--CCCCCCCcchh
Confidence 56789999999999854 34555554210 00011134689999999999999998875 3221111 11233567888
Q ss_pred eeee---cccccCeEEEEEeeCC
Q 005212 333 FKTG---AMRLGKDALVLTQTAD 352 (709)
Q Consensus 333 fKsA---smrLg~~v~V~TK~~g 352 (709)
+..+ .-.+|.++.|.|...+
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~~ 508 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPNR 508 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCCC
Confidence 8422 2247888988887643
No 73
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=93.95 E-value=0.14 Score=63.06 Aligned_cols=93 Identities=14% Similarity=0.198 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcccccccee
Q 005212 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A-~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGf 333 (709)
+..++..||+||+.+.. ..|.|.+... ....+.-.|.|.|+|.||+++++.+++..-.+.+.. ...-+--|+|+
T Consensus 566 L~QVL~NLL~NAik~t~~G~I~I~v~~~---~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~--~~~~~GtGLGL 640 (894)
T PRK10618 566 LRKILLLLLNYAITTTAYGKITLEVDQD---ESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQG--DRYGKASGLTF 640 (894)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEc---cCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCC--CCCCCCcChhH
Confidence 56779999999999854 3566666531 011234578999999999999999987522222211 11122357777
Q ss_pred eee---cccccCeEEEEEeeCC
Q 005212 334 KTG---AMRLGKDALVLTQTAD 352 (709)
Q Consensus 334 KsA---smrLg~~v~V~TK~~g 352 (709)
..+ .-.+|.++.|.|....
T Consensus 641 aI~k~Lve~~GG~I~v~S~~g~ 662 (894)
T PRK10618 641 FLCNQLCRKLGGHLTIKSREGL 662 (894)
T ss_pred HHHHHHHHHcCCEEEEEECCCC
Confidence 321 2247889999887643
No 74
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=93.85 E-value=0.066 Score=61.44 Aligned_cols=45 Identities=24% Similarity=0.291 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005212 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (709)
...++.|+++||+.+. +..|.|.+.. .++.-.+.|.|||.||+++
T Consensus 411 L~ril~nlL~NAiKha~~~~I~I~l~~------~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 411 LFRVCQEGLNNIVKHADASAVTLQGWQ------QDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------cCCEEEEEEEECCCCCCcC
Confidence 5678899999999864 4667776653 2345679999999999864
No 75
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=93.53 E-value=0.092 Score=57.41 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=53.2
Q ss_pred CHHHHHHHHHhccccc-CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccce
Q 005212 254 WIFGAIAELVDNSRDA-KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA-~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiG 332 (709)
.++-++.|.|.|++.. +|+++.|.+.. .++.-.|.|.|||.|.+.+... | |.|
T Consensus 279 ~l~rivQEaltN~~rHa~A~~v~V~l~~------~~~~l~l~V~DnG~Gf~~~~~~------------------~--~~G 332 (365)
T COG4585 279 ALFRIVQEALTNAIRHAQATEVRVTLER------TDDELRLEVIDNGVGFDPDKEG------------------G--GFG 332 (365)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEEEE------cCCEEEEEEEECCcCCCccccC------------------C--Ccc
Confidence 4788899999999985 68999999885 3456889999999998865321 2 334
Q ss_pred ee---eecccccCeEEEEEee
Q 005212 333 FK---TGAMRLGKDALVLTQT 350 (709)
Q Consensus 333 fK---sAsmrLg~~v~V~TK~ 350 (709)
++ -=...+|..+.|.|..
T Consensus 333 L~~mreRv~~lgG~l~i~S~~ 353 (365)
T COG4585 333 LLGMRERVEALGGTLTIDSAP 353 (365)
T ss_pred hhhHHHHHHHcCCEEEEEecC
Confidence 43 2233588899998877
No 76
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=93.46 E-value=0.18 Score=63.31 Aligned_cols=94 Identities=11% Similarity=0.150 Sum_probs=57.7
Q ss_pred CHHHHHHHHHhcccccCCC-ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccce
Q 005212 254 WIFGAIAELVDNSRDAKAT-KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A~-~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiG 332 (709)
.+..++..||+||+++... .+.|.+.... .......-.|.|.|||.||+++++.+++...++.+. ....+..|+|
T Consensus 828 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~-~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~---~~~~~G~GLG 903 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTEGAVKITTSLGH-IDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA---GRQQTGSGLG 903 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEee-ecCCceEEEEEEEEcCCCCCHHHHHHhhcccccccc---CCCCCCcCch
Confidence 3567899999999998653 3455443210 000111235789999999999999988763332221 1122346888
Q ss_pred eeee---cccccCeEEEEEeeC
Q 005212 333 FKTG---AMRLGKDALVLTQTA 351 (709)
Q Consensus 333 fKsA---smrLg~~v~V~TK~~ 351 (709)
+..+ .-..|.++.|.|...
T Consensus 904 L~i~~~iv~~~gG~i~v~s~~~ 925 (1197)
T PRK09959 904 LMICKELIKNMQGDLSLESHPG 925 (1197)
T ss_pred HHHHHHHHHHcCCEEEEEeCCC
Confidence 8532 124778888887654
No 77
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=93.40 E-value=0.12 Score=50.43 Aligned_cols=52 Identities=15% Similarity=0.127 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh
Q 005212 255 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A-----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (709)
+..|+.|++.||+..+- ..|.|.+.. ..+...+.|.|+|.||+++.+...+.
T Consensus 43 l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~------~~~~l~i~V~D~G~g~d~~~~~~~~~ 99 (161)
T PRK04069 43 MKIAVSEACTNAVQHAYKEDEVGEIHIRFEI------YEDRLEIVVADNGVSFDYETLKSKLG 99 (161)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCeEEEEEEE------ECCEEEEEEEECCcCCChHHhccccC
Confidence 56789999999998864 245665543 24567899999999999887766544
No 78
>PRK03660 anti-sigma F factor; Provisional
Probab=93.33 E-value=0.32 Score=45.88 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=47.1
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcccc
Q 005212 254 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A-----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~ 328 (709)
.+..|+.|++.||+..+. ..|.|.+.. ..+...+.|.|+|.||+. +...+.-..+.+.. -+.
T Consensus 39 ~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~------~~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~-----~~~ 105 (146)
T PRK03660 39 EIKTAVSEAVTNAIIHGYENNPDGVVYIEVEI------EEEELEITVRDEGKGIED--IEEAMQPLYTTKPE-----LER 105 (146)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------CCCEEEEEEEEccCCCCh--HHHhhCCCcccCCC-----CCC
Confidence 456889999999997542 346666542 234567899999999985 23333222221110 123
Q ss_pred ccceeeeecccccCeEEEEE
Q 005212 329 FGVGFKTGAMRLGKDALVLT 348 (709)
Q Consensus 329 fGiGfKsAsmrLg~~v~V~T 348 (709)
-|+|+.. .-++++.+.+.+
T Consensus 106 ~GlGL~i-~~~~~~~i~~~~ 124 (146)
T PRK03660 106 SGMGFTV-MESFMDEVEVES 124 (146)
T ss_pred ccccHHH-HHHhCCeEEEEe
Confidence 4778743 223556555544
No 79
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=93.01 E-value=0.22 Score=55.15 Aligned_cols=74 Identities=23% Similarity=0.462 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcccccC----------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCC--CC
Q 005212 255 IFGAIAELVDNSRDAK----------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA--DD 322 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~----------A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~--~~ 322 (709)
+.-.+-||..||..|. -..|.|.+-. +++...+.|.|-|+|++.+++..++.+++|.... .+
T Consensus 261 L~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~------gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d 334 (414)
T KOG0787|consen 261 LYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAK------GDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSD 334 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEec------CCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCC
Confidence 4556889999999993 2347777663 4556788999999999999999999999876432 11
Q ss_pred ---CCccccccceee
Q 005212 323 ---PNRIGRFGVGFK 334 (709)
Q Consensus 323 ---~~~IG~fGiGfK 334 (709)
....--||-|+-
T Consensus 335 ~~~~~plaGfG~GLP 349 (414)
T KOG0787|consen 335 NNRTAPLAGFGFGLP 349 (414)
T ss_pred CCCcCcccccccCCc
Confidence 233444666653
No 80
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=92.82 E-value=0.24 Score=45.45 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=50.6
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcccc
Q 005212 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A~-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~ 328 (709)
.+.-|+.|++.||+..+.. .|.|.+.. ..+.-.|.|.|+|.|+++..+.....-+. .....
T Consensus 31 ~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~------~~~~l~i~v~D~G~~~d~~~~~~~~~~~~--------~~~~~ 96 (125)
T PF13581_consen 31 DLELAVSEALTNAVEHGYPGDPDGPVDVRLEV------DPDRLRISVRDNGPGFDPEQLPQPDPWEP--------DSLRE 96 (125)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEE------cCCEEEEEEEECCCCCChhhccCcccccC--------CCCCC
Confidence 4668999999999998753 45555543 34567899999999999886544211111 11222
Q ss_pred ccceeeeecccccCeEEE
Q 005212 329 FGVGFKTGAMRLGKDALV 346 (709)
Q Consensus 329 fGiGfKsAsmrLg~~v~V 346 (709)
-|.|+.. .-.+.+++.+
T Consensus 97 ~G~Gl~l-i~~l~D~~~~ 113 (125)
T PF13581_consen 97 GGRGLFL-IRSLMDEVDY 113 (125)
T ss_pred CCcCHHH-HHHHHcEEEE
Confidence 3666632 2357888887
No 81
>PRK13557 histidine kinase; Provisional
Probab=92.70 E-value=0.27 Score=55.06 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcccccCCCc--cEEEEEeceec---------cCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCC
Q 005212 255 IFGAIAELVDNSRDAKATK--LEISIESIYFK---------KAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDP 323 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~~--I~I~I~~~~~~---------~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~ 323 (709)
+..++..|+.||+++.... +.|........ ...++.-.|.|.|||.||+++...+++...++.+.
T Consensus 278 l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~---- 353 (540)
T PRK13557 278 AEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE---- 353 (540)
T ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----
Confidence 5577999999999986543 33333211000 00122346899999999999999888764444332
Q ss_pred Cccccccceeee---ecccccCeEEEEEeeC
Q 005212 324 NRIGRFGVGFKT---GAMRLGKDALVLTQTA 351 (709)
Q Consensus 324 ~~IG~fGiGfKs---AsmrLg~~v~V~TK~~ 351 (709)
..+..|+|+.. ..-.+|..+.|.|...
T Consensus 354 -~~~g~GlGL~i~~~~v~~~gG~i~~~s~~~ 383 (540)
T PRK13557 354 -EGKGTGLGLSMVYGFAKQSGGAVRIYSEVG 383 (540)
T ss_pred -CCCCCCccHHHHHHHHHHCCCEEEEEecCC
Confidence 12345777742 2235788888887653
No 82
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=92.56 E-value=0.24 Score=59.58 Aligned_cols=101 Identities=23% Similarity=0.335 Sum_probs=67.6
Q ss_pred eeecCHHHHHHhccccccCHHHHHHHHHhcccccCC--------------CccEEEEEeceeccCCCCcCEEEEEeCCCC
Q 005212 236 FVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA--------------TKLEISIESIYFKKAGKDIPMLSIIDDGHG 301 (709)
Q Consensus 236 ~~~v~p~~L~slstshi~~~f~AIaELIDNA~DA~A--------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~G 301 (709)
...++..+|..++ ..|..||-||+|.|- -.|.+.-.. .++.-.|.|.|||.|
T Consensus 422 ~telDksIlE~l~--------dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~------~gn~ivIev~DDG~G 487 (716)
T COG0643 422 DTELDKSILERLG--------DPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYH------EGNNIVIEVSDDGAG 487 (716)
T ss_pred CeeehHHHHHHhc--------ccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEc------CCCeEEEEEeeCCCC
Confidence 3556777776653 237889999999973 234444432 455677899999999
Q ss_pred CCHHhHhh-hhh-----------------------cccCCCCCCCCCcccccccee---eeecccccCeEEEEEeeCC
Q 005212 302 MTHQDVVR-MTY-----------------------FGHKQPDADDPNRIGRFGVGF---KTGAMRLGKDALVLTQTAD 352 (709)
Q Consensus 302 Mt~eeL~~-~l~-----------------------fG~s~k~~~~~~~IG~fGiGf---KsAsmrLg~~v~V~TK~~g 352 (709)
|+++.+.+ ++. .|+|.+. .-..+.--|+|| |+..-+||..+.|.|+...
T Consensus 488 id~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~--~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~ 563 (716)
T COG0643 488 IDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAE--QVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGK 563 (716)
T ss_pred CCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcch--hhhcccCCccCHHHHHHHHHHcCCEEEEEecCCC
Confidence 99988753 332 2555443 233445569998 5656679999999997643
No 83
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=92.36 E-value=0.32 Score=47.60 Aligned_cols=85 Identities=16% Similarity=0.041 Sum_probs=53.2
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcccc
Q 005212 254 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A-----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~ 328 (709)
.+.-|+.|++.||+..+- ..|.|.+.. ..+...+.|.|+|.|++++.+...+........ .+....
T Consensus 42 ~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~------~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~-~~~~~~-- 112 (159)
T TIGR01924 42 DLKIAVSEACTNAVKHAYKEGENGEIGISFHI------YEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEP-IDDLRE-- 112 (159)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCeEEEEEEE------eCCEEEEEEEEcccccCchhhccccCCCCCCCC-cccCCC--
Confidence 466799999999998863 356666653 234677899999999998876653322111110 011112
Q ss_pred ccceeeeecccccCeEEEEE
Q 005212 329 FGVGFKTGAMRLGKDALVLT 348 (709)
Q Consensus 329 fGiGfKsAsmrLg~~v~V~T 348 (709)
-|.|+.. .-.|.+++.+.+
T Consensus 113 ~G~GL~L-i~~L~D~v~~~~ 131 (159)
T TIGR01924 113 GGLGLFL-IETLMDEVEVYE 131 (159)
T ss_pred CccCHHH-HHHhccEEEEEe
Confidence 3777743 225778887765
No 84
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=91.08 E-value=0.34 Score=55.88 Aligned_cols=75 Identities=19% Similarity=0.408 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcccc-cCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcccccccee
Q 005212 255 IFGAIAELVDNSRD-AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (709)
Q Consensus 255 ~f~AIaELIDNA~D-A~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGf 333 (709)
...-++|-+.||+. |.|++|.|.+.. ..+...+.|.|||+|++.. ....|.||+-.
T Consensus 482 lLqIvREAlsNa~KHa~As~i~V~~~~------~~g~~~~~VeDnG~Gi~~~-----------------~e~~gHyGL~I 538 (574)
T COG3850 482 LLQIVREALSNAIKHAQASEIKVTVSQ------NDGQVTLTVEDNGVGIDEA-----------------AEPSGHYGLNI 538 (574)
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEe------cCCeEEEEEeeCCcCCCCc-----------------cCCCCCcchHH
Confidence 34458999999997 579999998874 3478899999999999854 23457886654
Q ss_pred ee-ecccccCeEEEEEeeCC
Q 005212 334 KT-GAMRLGKDALVLTQTAD 352 (709)
Q Consensus 334 Ks-AsmrLg~~v~V~TK~~g 352 (709)
-. -+-+|+..+.|..+..+
T Consensus 539 M~ERA~~L~~~L~i~~~~~g 558 (574)
T COG3850 539 MRERAQRLGGQLRIRRREGG 558 (574)
T ss_pred HHHHHHHhcCeEEEeecCCC
Confidence 10 02257777777776654
No 86
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=90.57 E-value=0.72 Score=55.72 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh-cccCCC
Q 005212 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQP 318 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~s~k 318 (709)
+..+|.-|||||.....+...|.|.-. ...+.-.+.|.|+|.|++.+++.+.|. |-+..+
T Consensus 776 ieQVLiNLleNA~Kyap~~s~I~I~~~----~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~ 836 (890)
T COG2205 776 IEQVLINLLENALKYAPPGSEIRINAG----VERENVVFSVIDEGPGIPEGELERIFDKFYRGNK 836 (890)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEE----EecceEEEEEEeCCCCCChhHHHHhhhhhhcCCC
Confidence 357799999999998765544444321 134567899999999999999999885 544433
No 87
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=89.85 E-value=0.18 Score=46.21 Aligned_cols=45 Identities=16% Similarity=0.538 Sum_probs=35.6
Q ss_pred Ccccccc-CC--CCCchhhhHHHHHHHhhcCCeEEEEEece------eEEEEeC
Q 005212 70 SHCFLSP-AP--ECSRDHNEWRRFLIYLQGRDMVAIAKFKF------WEFYILP 114 (709)
Q Consensus 70 ~~~~~~p-~~--~~~~~~~ew~~f~~~l~~~~~~~~~~~~~------~~~~~~~ 114 (709)
-.+++++ .| .++.+...+.+|..||...+|+|||.++. ..+||+|
T Consensus 66 ~v~v~~~~~~~~~~~~~~~~~~~l~~Yl~~k~r~GVv~~~~~~~~~~~dlYl~P 119 (119)
T PF07744_consen 66 DVCVVALSSPESDSNSDRRPFQKLVDYLKSKQRAGVVSVGNSPSGQVKDLYLFP 119 (119)
T ss_dssp EEEEEEE-SSHHHHHHHHHHHHHTHHHHHHHTEEEEEEE--TT--S-EEEEEE-
T ss_pred eEEEEEEcCCcccCHHHHHHHHHHHHHHhhCCEEEEEecCCCCCCceeEEEEcC
Confidence 4455555 34 67888999999999999999999999995 8899988
No 88
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=89.32 E-value=0.43 Score=54.22 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=38.3
Q ss_pred CHHHHHHHHHhcccccCC----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhh
Q 005212 254 WIFGAIAELVDNSRDAKA----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT 311 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l 311 (709)
.|.-.|-=|||||+-||. ....|.+... ...+.-.+.|.|||.||+++......
T Consensus 350 ~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~----~~~~~i~i~i~Dng~g~~~~~~~~~~ 407 (456)
T COG2972 350 DPKLVLQPLVENAIEHGIEPKRPGGSIAISAK----KQDDVIQISISDNGPGIDEEKLEGLS 407 (456)
T ss_pred CchHHHhHHHHHHHHHhcccCCCCCEEEEEEE----EcCCEEEEEEeeCCCCCChhHHHHHH
Confidence 467778899999999984 2334444421 12456778999999999998776643
No 89
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=89.32 E-value=0.69 Score=45.09 Aligned_cols=87 Identities=18% Similarity=0.179 Sum_probs=52.9
Q ss_pred cccCHHHHHHHHHhcccccCCC------ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCC
Q 005212 251 HSGWIFGAIAELVDNSRDAKAT------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPN 324 (709)
Q Consensus 251 hi~~~f~AIaELIDNA~DA~A~------~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~ 324 (709)
.+..+..|+.|++.|++.++-+ .|.|.... ..+...++|+|.|.|+. ++...+.-+.... +..
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~------~~~~~~i~i~D~G~~~~--~~~~~~~~~~~~~---~~~ 105 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSL------DDGKLEIRIWDQGPGIE--DLEESLGPGDTTA---EGL 105 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEE------cCCeEEEEEEeCCCCCC--CHHHhcCCCCCCC---ccc
Confidence 3346789999999999987532 34444442 34568899999996665 4444444442222 122
Q ss_pred ccccccceeeeecccccCeEEEEEeeC
Q 005212 325 RIGRFGVGFKTGAMRLGKDALVLTQTA 351 (709)
Q Consensus 325 ~IG~fGiGfKsAsmrLg~~v~V~TK~~ 351 (709)
..| |+|| ....++.+++.+.....
T Consensus 106 ~~~--G~Gl-~l~~~~~D~~~~~~~~~ 129 (146)
T COG2172 106 QEG--GLGL-FLAKRLMDEFSYERSED 129 (146)
T ss_pred ccc--cccH-HHHhhhheeEEEEeccC
Confidence 333 6666 33445777777775443
No 90
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=89.28 E-value=0.38 Score=55.69 Aligned_cols=46 Identities=17% Similarity=0.352 Sum_probs=35.8
Q ss_pred CHHHHHHHHHhcccccC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005212 254 WIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (709)
++..++.|+|+||+.+. +..|.|.+.. .++.-.|.|.|||.||+++
T Consensus 469 ~l~~il~ell~NA~kha~a~~i~V~~~~------~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 469 HLLQIAREALSNALKHAQASEVVVTVAQ------NQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEE------cCCEEEEEEEECCCCCCcc
Confidence 36778999999999864 5677777653 2345679999999999875
No 91
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=87.25 E-value=0.68 Score=48.00 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=32.8
Q ss_pred HHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCC-cCEEEEEeCCCCCCHH
Q 005212 256 FGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKD-IPMLSIIDDGHGMTHQ 305 (709)
Q Consensus 256 f~AIaELIDNA~DA~A~-----~I~I~I~~~~~~~~~~~-~~~L~I~DNG~GMt~e 305 (709)
--++.||+.||+..++. +|.|.+... ..+ ...+.|.|||.|++.+
T Consensus 124 gliv~EL~tNa~Khaf~~~~~G~I~I~~~~~-----~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 124 GLIVHELVTNALKHAFLSRPGGEIRITLSRE-----GDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCEEEEEEEEc-----CCCCeEEEEEEECCCCCCCC
Confidence 34589999999998764 566666531 222 3689999999999854
No 92
>PRK13560 hypothetical protein; Provisional
Probab=86.48 E-value=0.65 Score=54.85 Aligned_cols=44 Identities=25% Similarity=0.414 Sum_probs=31.2
Q ss_pred HHHHHHHhcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005212 257 GAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (709)
Q Consensus 257 ~AIaELIDNA~DA~A-----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (709)
..|.+|+.||+++.. ..|.|.+.. ...+.-.|+|.|||.||+++
T Consensus 714 ~il~NLl~NAik~~~~~~~~~~i~i~~~~-----~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 714 LIISELLSNALKHAFPDGAAGNIKVEIRE-----QGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHHhhccCCCCceEEEEEEE-----cCCCEEEEEEEeCCCcCCcc
Confidence 367899999999742 345555542 12345679999999999975
No 93
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=85.88 E-value=0.91 Score=53.32 Aligned_cols=52 Identities=17% Similarity=0.358 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcccccCCC---------ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh
Q 005212 255 IFGAIAELVDNSRDAKAT---------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~---------~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (709)
+-.|+.-|+.||.+|.+. .|.++.+. .++.-++.|.|||.|.+.+..++++.
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~------~~g~i~v~V~DNGkG~p~e~r~r~~E 661 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDD------ADGRIVVDVIDNGKGFPRENRHRALE 661 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEec------CCCeEEEEEecCCCCCChHHhhhhcc
Confidence 346788899999998531 24444442 34567889999999999999999874
No 94
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=85.81 E-value=0.73 Score=51.00 Aligned_cols=71 Identities=17% Similarity=0.368 Sum_probs=49.6
Q ss_pred HHHHHHHHhcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh-cccCCCCCCCCCccccccce
Q 005212 256 FGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIGRFGVG 332 (709)
Q Consensus 256 f~AIaELIDNA~DA~A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~s~k~~~~~~~IG~fGiG 332 (709)
...|--+|.||+.... .+|.|.+.. ....-.++|.|.|.|++.+++.+.|. |-+-.+. .....|--|+|
T Consensus 344 tQVldNii~NA~KYsP~Gg~Itv~~~~------~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkA--RsR~~gGTGLG 415 (459)
T COG5002 344 TQVLDNIISNALKYSPDGGRITVSVKQ------RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKA--RSRKMGGTGLG 415 (459)
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEEEee------eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhh--hhhcCCCCchh
Confidence 4567888999988754 566666653 23356789999999999999999875 4443332 23456666888
Q ss_pred ee
Q 005212 333 FK 334 (709)
Q Consensus 333 fK 334 (709)
+.
T Consensus 416 La 417 (459)
T COG5002 416 LA 417 (459)
T ss_pred HH
Confidence 74
No 95
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=83.52 E-value=2 Score=49.20 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=44.4
Q ss_pred CHHHHHHHHHhcccccCCC---ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCC
Q 005212 254 WIFGAIAELVDNSRDAKAT---KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQP 318 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A~---~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k 318 (709)
.+...+-.|+-||.||... -|+|.... ...+..++.|.|||.|-+.+-+.+.+..-++.|
T Consensus 564 ~ieQVlvNl~~NaldA~~h~~p~i~~~~~~-----~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK 626 (673)
T COG4192 564 SIEQVLVNLIVNALDASTHFAPWIKLIALG-----TEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSK 626 (673)
T ss_pred hHHHHHHHHHHHHHhhhccCCceEEEEeec-----CcccceEEEEecCCCCCchhHHHHhcCCccccc
Confidence 4778899999999999654 45554442 134567899999999999988888887444444
No 96
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=77.97 E-value=0.49 Score=37.27 Aligned_cols=37 Identities=19% Similarity=0.486 Sum_probs=25.9
Q ss_pred CCCCceeeCccccccccCCC-CCCC---CCCCCceeeCCCC
Q 005212 641 KPDQEWVQCNKCRKWRMLDP-GFDT---KSLPVECLLRGCV 677 (709)
Q Consensus 641 ~~~~~wvQCd~C~KWR~Lp~-~~~~---~~lp~~W~c~~c~ 677 (709)
..+..+||||.|..|-+..= +... ......|+|..|.
T Consensus 9 ~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 9 DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 34679999999999998762 2221 2334499998773
No 97
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=77.05 E-value=2.9 Score=47.80 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005212 255 IFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A-~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (709)
....+.+|+.||+.+.. ..+.|.+.. ...+.-.|.|.|||.||+++
T Consensus 472 l~qv~~nll~NA~k~~~~~~i~i~~~~-----~~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHANASEIAVSCVT-----NPDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEE-----cCCCEEEEEEEECCcCcCCC
Confidence 45678999999998643 456666542 12345678999999999863
No 98
>PRK13559 hypothetical protein; Provisional
Probab=76.58 E-value=2.6 Score=45.26 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005212 255 IFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A-----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (709)
+..++.||+.||+.+++ ..|.|.+... ...+...+.+.|||.|++++
T Consensus 268 l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~----~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 268 LGLVLHELAVNAIKHGALSADQGRISISWKPS----PEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHhHHHhccccCCCcEEEEEEEec----CCCCeEEEEEECCCCCCCCC
Confidence 45679999999999854 3566655211 12345688899999997754
No 99
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=75.23 E-value=3.7 Score=48.64 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcccccCC---CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh
Q 005212 255 IFGAIAELVDNSRDAKA---TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY 312 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A---~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~ 312 (709)
.-....-||.||+..+. +.|.|..+. ..+.-++.|.|||.|++++-+.+.|.
T Consensus 637 l~qv~~NLi~Naik~~~~e~~~i~I~~~r------~ed~~t~sV~dng~Gi~~a~~~riF~ 691 (750)
T COG4251 637 LGQVFQNLIANAIKFGGPENPDIEISAER------QEDEWTFSVRDNGIGIDPAYFERIFV 691 (750)
T ss_pred HHHHHHHHHhhheecCCCCCCceEEeeec------cCCceEEEecCCCCCcCHHHHHHHHH
Confidence 34556889999998865 457777664 34567899999999999999988764
No 100
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=74.79 E-value=5.3 Score=44.19 Aligned_cols=71 Identities=24% Similarity=0.421 Sum_probs=48.0
Q ss_pred HHHHhccc-ccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccceeeee--
Q 005212 260 AELVDNSR-DAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTG-- 336 (709)
Q Consensus 260 aELIDNA~-DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGfKsA-- 336 (709)
-|-+.|-= -|+|++|.|.+.. ..+.-.+.|.|||.|++..++.+- +.|+|+.--
T Consensus 365 QEaltNIErHa~Atrv~ill~~------~~d~vql~vrDnG~GF~~~~~~~~-----------------~~GiGLRNMrE 421 (459)
T COG4564 365 QEALTNIERHAGATRVTILLQQ------MGDMVQLMVRDNGVGFSVKEALQK-----------------RHGIGLRNMRE 421 (459)
T ss_pred HHHHHHHHhhcCCeEEEEEecc------CCcceEEEEecCCCCccchhhccC-----------------ccccccccHHH
Confidence 44444432 3689999998863 456778999999999998765441 147887521
Q ss_pred cc-cccCeEEEEEeeCCC
Q 005212 337 AM-RLGKDALVLTQTADS 353 (709)
Q Consensus 337 sm-rLg~~v~V~TK~~g~ 353 (709)
-| .+|..++|.|-..|+
T Consensus 422 Rma~~GG~~~v~s~p~GT 439 (459)
T COG4564 422 RMAHFGGELEVESSPQGT 439 (459)
T ss_pred HHHHhCceEEEEecCCCc
Confidence 11 378888888866654
No 101
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=71.44 E-value=1.8 Score=34.61 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=15.1
Q ss_pred CCCCCCCCCCCCceeeCCCCchhhh
Q 005212 658 LDPGFDTKSLPVECLLRGCVIFLSK 682 (709)
Q Consensus 658 Lp~~~~~~~lp~~W~c~~c~~~~~~ 682 (709)
+|.++.-++||+.|.|..|..+++.
T Consensus 22 i~pGt~F~~Lp~~w~CP~C~a~K~~ 46 (47)
T PF00301_consen 22 IPPGTPFEDLPDDWVCPVCGAPKSD 46 (47)
T ss_dssp B-TT--GGGS-TT-B-TTTSSBGGG
T ss_pred cCCCCCHHHCCCCCcCcCCCCcccc
Confidence 4445455899999999999998764
No 102
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=65.65 E-value=11 Score=41.51 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=36.7
Q ss_pred CHHHHHHHHHhcccccCCC----ccEEEEEece--eccCCC----CcCEEEEEeCCCCCCHHhHhhhhh
Q 005212 254 WIFGAIAELVDNSRDAKAT----KLEISIESIY--FKKAGK----DIPMLSIIDDGHGMTHQDVVRMTY 312 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A~----~I~I~I~~~~--~~~~~~----~~~~L~I~DNG~GMt~eeL~~~l~ 312 (709)
.+..|+.-||.||..|.+. .=.|.+.... ..+..+ -.-.|.|.|||.|++.+-....|.
T Consensus 241 qliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~ 309 (363)
T COG3852 241 QLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFY 309 (363)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccc
Confidence 4678999999999999772 1223222110 000011 123478999999999877666664
No 103
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=65.11 E-value=3.4 Score=33.45 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=18.8
Q ss_pred CCCCCCCCCCceeeCCCCchhhhh
Q 005212 660 PGFDTKSLPVECLLRGCVIFLSKR 683 (709)
Q Consensus 660 ~~~~~~~lp~~W~c~~c~~~~~~~ 683 (709)
.++.-++||+.|.|..|..++++.
T Consensus 24 pGt~f~~Lp~~w~CP~C~a~K~~F 47 (50)
T cd00730 24 PGTPFEDLPDDWVCPVCGAGKDDF 47 (50)
T ss_pred CCCCHhHCCCCCCCCCCCCcHHHc
Confidence 344447899999999999987654
No 104
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=56.11 E-value=4.9 Score=43.18 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=27.3
Q ss_pred ceeeCcc--cc-ccccCCCCCCCCCCCCceeeCCCCch
Q 005212 645 EWVQCNK--CR-KWRMLDPGFDTKSLPVECLLRGCVIF 679 (709)
Q Consensus 645 ~wvQCd~--C~-KWR~Lp~~~~~~~lp~~W~c~~c~~~ 679 (709)
..|.||- |- .|=+++=..-...=.++|||..|...
T Consensus 231 ~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 231 KMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred cccccCCCCCCcceEEEeccccccCCCCcccchhhhhh
Confidence 7899986 99 99999854333555678999999763
No 105
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=53.20 E-value=16 Score=41.16 Aligned_cols=46 Identities=28% Similarity=0.395 Sum_probs=36.6
Q ss_pred CHHHHHHHHHhcccc-cCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005212 254 WIFGAIAELVDNSRD-AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (709)
Q Consensus 254 ~~f~AIaELIDNA~D-A~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (709)
..+-..-|++.|-.. |.|+.|+|.+-. +++.-.+.|.|||.|++..
T Consensus 410 TLyRl~QE~LNNI~KHA~AS~V~i~l~~------~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 410 TLYRLCQELLNNICKHADASAVTIQLWQ------QDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred eHHHHHHHHHHHHHhccccceEEEEEee------CCcEEEEEEecCCcCCCCC
Confidence 477788999999875 689999998763 3445789999999998853
No 106
>COG1773 Rubredoxin [Energy production and conversion]
Probab=52.00 E-value=8.9 Score=31.82 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=17.3
Q ss_pred CCCCCCCCCCceeeCCCCchhh
Q 005212 660 PGFDTKSLPVECLLRGCVIFLS 681 (709)
Q Consensus 660 ~~~~~~~lp~~W~c~~c~~~~~ 681 (709)
.++.=++||++|.|..|.+.++
T Consensus 26 pgT~fedlPd~w~CP~Cg~~K~ 47 (55)
T COG1773 26 PGTPFEDLPDDWVCPECGVGKK 47 (55)
T ss_pred CCCchhhCCCccCCCCCCCCHh
Confidence 3433489999999999999655
No 107
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=37.67 E-value=42 Score=39.11 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=39.7
Q ss_pred eecCHHHHHHhccccccCHHHHHHHHHhcccccCC------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005212 237 VRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKA------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (709)
Q Consensus 237 ~~v~p~~L~slstshi~~~f~AIaELIDNA~DA~A------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (709)
+.+++++..-. + |---|-=||.||+..|- -.|.|.+.. .+..-.+.|+|||.|+.++
T Consensus 445 i~id~~l~~~~----i--P~filQPLVENAIKHG~~~~~~~g~V~I~V~~------~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 445 IDIDEELRQVQ----I--PSFILQPLVENAIKHGISQLKDTGRVTISVEK------EDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred EecCHHHhhcc----C--chhhhhHHHHHHHHhcccchhcCCceEEEEEE------eCCeEEEEEecCCCCcCCC
Confidence 56666665433 2 33347889999998864 356676664 3345789999999999986
No 108
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=37.17 E-value=15 Score=34.66 Aligned_cols=17 Identities=12% Similarity=0.378 Sum_probs=13.9
Q ss_pred chhhhHHHHHHHhhcCC
Q 005212 82 RDHNEWRRFLIYLQGRD 98 (709)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (709)
+...+|++||||..+++
T Consensus 91 ~s~~~WdRFMRFMeRYA 107 (113)
T PRK13610 91 NSEEAFERFMRFASRYA 107 (113)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998775
No 109
>PF03912 Psb28: Psb28 protein; InterPro: IPR005610 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein Psb28 (PsbW) found in PSII, where it is a subunit of the oxygen-evolving complex. Psb28 appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of Psb28, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 1 Psb28.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0016020 membrane; PDB: 2KVO_A.
Probab=36.90 E-value=13 Score=34.83 Aligned_cols=15 Identities=27% Similarity=0.831 Sum_probs=12.8
Q ss_pred hhhHHHHHHHhhcCC
Q 005212 84 HNEWRRFLIYLQGRD 98 (709)
Q Consensus 84 ~~ew~~f~~~l~~~~ 98 (709)
..+|++||||+.+++
T Consensus 86 ~~~WdRFMRFMeRYA 100 (108)
T PF03912_consen 86 EEEWDRFMRFMERYA 100 (108)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 469999999998764
No 110
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=36.52 E-value=16 Score=34.34 Aligned_cols=17 Identities=29% Similarity=0.794 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 005212 82 RDHNEWRRFLIYLQGRD 98 (709)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (709)
+...+|++||||..+++
T Consensus 85 ~s~~~WdRFMRFMeRYA 101 (111)
T PLN00039 85 RSPREWDRFMRFMERYA 101 (111)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 111
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=35.42 E-value=17 Score=34.25 Aligned_cols=17 Identities=24% Similarity=0.792 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 005212 82 RDHNEWRRFLIYLQGRD 98 (709)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (709)
+...+|++||||..+++
T Consensus 87 ~s~~~WdRFMRFMeRYA 103 (113)
T PRK13612 87 KSEQEWDRFMRFMERYA 103 (113)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 112
>TIGR03047 PS_II_psb28 photosystem II reaction center protein Psb28. Members of this protein family are the Psb28 protein of photosystem II. Two different protein families, apparently without homology between them, have been designated PsbW. Cyanobacterial proteins previously designated PsbW are members of the family described here. However, while members of the plant PsbW family are not found (so far) in Cyanobacteria, members of the present family do occur in plants. We therefore support the alternative designation that has emerged for this protein family, Psp28, rather than PsbW.
Probab=35.25 E-value=19 Score=33.84 Aligned_cols=17 Identities=24% Similarity=0.821 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 005212 82 RDHNEWRRFLIYLQGRD 98 (709)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (709)
+...+|++||||..+++
T Consensus 84 ~s~~~WdRFMRFmeRYA 100 (109)
T TIGR03047 84 KSEDEWDRFMRFMERYA 100 (109)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 113
>PRK13611 photosystem II reaction center protein Psb28; Provisional
Probab=34.85 E-value=18 Score=33.66 Aligned_cols=17 Identities=29% Similarity=0.729 Sum_probs=14.1
Q ss_pred chhhhHHHHHHHhhcCC
Q 005212 82 RDHNEWRRFLIYLQGRD 98 (709)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (709)
+...+|++||||..+++
T Consensus 80 ~s~~~wdRFMRFmeRYA 96 (104)
T PRK13611 80 ETEAEWDRFLRFMERFS 96 (104)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 35679999999998775
No 114
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=34.22 E-value=19 Score=34.05 Aligned_cols=17 Identities=18% Similarity=0.729 Sum_probs=14.0
Q ss_pred chhhhHHHHHHHhhcCC
Q 005212 82 RDHNEWRRFLIYLQGRD 98 (709)
Q Consensus 82 ~~~~ew~~f~~~l~~~~ 98 (709)
+...+|++||||..+++
T Consensus 87 ~s~~~WdRFMRFMeRYA 103 (113)
T CHL00128 87 KNPEAWDRFMRFMERYA 103 (113)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 34579999999998875
No 115
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=34.10 E-value=82 Score=38.84 Aligned_cols=45 Identities=18% Similarity=0.430 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcccc----cCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhH
Q 005212 255 IFGAIAELVDNSRD----AKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV 307 (709)
Q Consensus 255 ~f~AIaELIDNA~D----A~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL 307 (709)
.+...-|.+.||.| +.-..+.+.|+. ....+.|.+||.|++-+..
T Consensus 54 l~ki~dEilvNaadk~rd~~m~~i~v~i~~--------e~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 54 LYKIFDEILVNAADKQRDPKMNTIKVTIDK--------EKNEISVYNNGKGIPVTIH 102 (842)
T ss_pred HHHHHHHHhhcccccccCCCcceeEEEEcc--------CCCEEEEEeCCCcceeeec
Confidence 44557899999998 223566776653 4679999999999987654
No 116
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=31.84 E-value=26 Score=42.66 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=32.1
Q ss_pred ceeeCccccccccCCCCCCCCC---CCCceeeCCCCchhhhhh
Q 005212 645 EWVQCNKCRKWRMLDPGFDTKS---LPVECLLRGCVIFLSKRL 684 (709)
Q Consensus 645 ~wvQCd~C~KWR~Lp~~~~~~~---lp~~W~c~~c~~~~~~~~ 684 (709)
..+-||.|.+-+.+-+=+|+.- .-..|||.||.-.....|
T Consensus 229 VLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~~~eh 271 (1134)
T KOG0825|consen 229 VLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLEITEH 271 (1134)
T ss_pred hheeecccccceeeccccCcccccccccceecCcchhhhhhhh
Confidence 5678999999999999888733 568899999998665444
No 117
>KOG4784 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.82 E-value=21 Score=39.53 Aligned_cols=27 Identities=15% Similarity=0.017 Sum_probs=22.1
Q ss_pred ccccccccCCCCCCCCCCCCceeeCCCC
Q 005212 650 NKCRKWRMLDPGFDTKSLPVECLLRGCV 677 (709)
Q Consensus 650 d~C~KWR~Lp~~~~~~~lp~~W~c~~c~ 677 (709)
+.|+.|+.||+. +-..||+.|+|.+|.
T Consensus 117 r~~~~l~~lPSe-~W~el~d~w~CH~~~ 143 (348)
T KOG4784|consen 117 RSYRSLNELPSE-NWTELPDCWSCHNDE 143 (348)
T ss_pred chhhhhhhcChh-hhhhcCceecccCCc
Confidence 578999999985 226899999999854
No 118
>PF14501 HATPase_c_5: GHKL domain
Probab=25.98 E-value=69 Score=28.45 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=25.9
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCC
Q 005212 254 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHG 301 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A-----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~G 301 (709)
++-..+.-|+|||++|.. +.|.|.+.. ..+...|.|.-...+
T Consensus 5 dl~~il~nlldNAiea~~~~~~~~~I~i~~~~------~~~~~~i~i~N~~~~ 51 (100)
T PF14501_consen 5 DLCRILGNLLDNAIEACKKYEDKRFISISIRE------ENGFLVIIIENSCEK 51 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEe------cCCEEEEEEEECCCC
Confidence 345678999999999843 355665553 234455566555333
No 119
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=25.34 E-value=37 Score=39.37 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=28.2
Q ss_pred ceeeCccccccccCCC----------CCCCCCCCCceeeCCCCchhhhh
Q 005212 645 EWVQCNKCRKWRMLDP----------GFDTKSLPVECLLRGCVIFLSKR 683 (709)
Q Consensus 645 ~wvQCd~C~KWR~Lp~----------~~~~~~lp~~W~c~~c~~~~~~~ 683 (709)
.| +|-.|. |-.=|. ++.-.+||+.|.|..|..+++..
T Consensus 425 ~~-~c~~c~-~~yd~~~g~~~~~~~~gt~~~~lp~~~~cp~c~~~k~~f 471 (479)
T PRK05452 425 RM-QCSVCQ-WIYDPAKGEPMQDVAPGTPWSEVPDNFLCPECSLGKDVF 471 (479)
T ss_pred eE-EECCCC-eEECCCCCCcccCCCCCCChhhCCCCCcCcCCCCcHHHh
Confidence 44 899998 655553 33347999999999999987644
No 120
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=25.23 E-value=84 Score=36.56 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=47.0
Q ss_pred cCHHHHHHHHHhcccccC-----CCccEEEEEeceeccCCCCcCEEEEEeCCC---CCCHHhHhhhhhcccCCCC-----
Q 005212 253 GWIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGH---GMTHQDVVRMTYFGHKQPD----- 319 (709)
Q Consensus 253 ~~~f~AIaELIDNA~DA~-----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~---GMt~eeL~~~l~fG~s~k~----- 319 (709)
.-|..|++|+|-||+-.. .+.|.|.+. ...|.|.-.|. ||+++++.+- .|..+
T Consensus 269 dyP~~alREai~NAv~HRDYs~~~~~v~I~iy----------dDRieI~NPGgl~~gi~~~~l~~~----~s~~RNp~LA 334 (467)
T COG2865 269 DYPLEALREAIINAVIHRDYSIRGRNVHIEIY----------DDRIEITNPGGLPPGITPEDLLKG----RSKSRNPVLA 334 (467)
T ss_pred cCCHHHHHHHHHHHHHhhccccCCCceEEEEE----------CCeEEEECCCCCCCCCChhHcccC----CCcccCHHHH
Confidence 348899999999999542 347777775 36899998886 8888777652 22211
Q ss_pred --CCCCCccccccceee
Q 005212 320 --ADDPNRIGRFGVGFK 334 (709)
Q Consensus 320 --~~~~~~IG~fGiGfK 334 (709)
..+...+-++|-|+.
T Consensus 335 ~~l~~~~liE~~GSGi~ 351 (467)
T COG2865 335 KVLRDMGLIEERGSGIR 351 (467)
T ss_pred HHHHHhhhHHHhCccHH
Confidence 023466778899985
No 121
>cd00594 KU Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.
Probab=23.87 E-value=84 Score=33.07 Aligned_cols=67 Identities=22% Similarity=0.325 Sum_probs=50.6
Q ss_pred CCccccccccccccee-e--ccCCCccccccCCCCCchhhhHHHHHHHhhcCCeEEEEEecee-----EEEEeCCC
Q 005212 49 LPHHWNVNDIVPTSKI-I--LDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFW-----EFYILPPD 116 (709)
Q Consensus 49 ~p~~~~~~~~~~~~~~-~--~~~~~~~~~~p~~~~~~~~~ew~~f~~~l~~~~~~~~~~~~~~-----~~~~~~~~ 116 (709)
-+..+.|.+|+|.+-+ . +.+.++.+. |.........--.-+.+=|...++|||+++-.- .+..|-|.
T Consensus 87 ~~~~l~ilgF~~~~~i~~~~~~~~s~~l~-P~~~~~~s~~af~aL~~am~~~~kvai~r~v~r~~~~p~l~aL~P~ 161 (272)
T cd00594 87 TSKGLDILGFVPASEIPPYYFDKESYYLV-PDDSDKGSEKAFSALRRALLEKDKVAIARYVLRRNSRPRLVALRPQ 161 (272)
T ss_pred CCCeEEEEeEechHhCCcceecCCcEEEE-cCCCCcccHHHHHHHHHHHHHcCcEEEEEEEEcCCCCcEEEEEecc
Confidence 4567889999999988 3 555566666 777655666677888899999999999998654 36666565
No 122
>smart00559 Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen. This is a single stranded DNA- and ATP-depedent helicase that has a role in chromosome translocation. This is a domain of unknown function C-terminal to its von Willebrand factor A domain, that also occurs in bacterial hypothetical proteins.
Probab=22.29 E-value=96 Score=29.81 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=46.6
Q ss_pred Cccccccccccccee-e--ccCCCccccccCCCC-CchhhhHHHHHHHhhcCCeEEEEEece-----eEEEEeCCC
Q 005212 50 PHHWNVNDIVPTSKI-I--LDGMSHCFLSPAPEC-SRDHNEWRRFLIYLQGRDMVAIAKFKF-----WEFYILPPD 116 (709)
Q Consensus 50 p~~~~~~~~~~~~~~-~--~~~~~~~~~~p~~~~-~~~~~ew~~f~~~l~~~~~~~~~~~~~-----~~~~~~~~~ 116 (709)
+..+.|.+|+|.+-+ . ++++++.+. |.+.. .....--.-+.+=|...++||||++-. -.+-.|-|.
T Consensus 35 ~~~l~ilgF~~~~~i~~~~~~~~s~~i~-P~~~~~~~s~~a~~aL~~am~~~~~~aiar~v~r~~~~p~l~aL~P~ 109 (140)
T smart00559 35 EPGLELLGFKPLSSLPPYYFLRPSYFLV-PDDKSVIGSTKAFSALVEALLETDKIAIARYTLRTKSNPRLVALRPY 109 (140)
T ss_pred CCeEEEEeecChHHCCHhHccCCcEEEe-eCCcccchhHHHHHHHHHHHHhcCCEEEEEEEEcCCCCCEEEEEEee
Confidence 578899999999988 2 445556666 77753 224445556777789999999999832 456666665
No 123
>PF06540 GMAP: Galanin message associated peptide (GMAP); InterPro: IPR013068 Galanin is a peptide hormone that controls various biological activities []. Galanin-like immuno-reactivity has been found in the central and peripheral nervous systems of mammals, with high concentrations demonstrated in discrete regions of the central nervous system, including the median eminence, hypothalamus, arcuate nucleus, septum, neuro-intermediate lobe of the pituitary, and the spinal cord. Its localisation within neurosecretory granules suggests that galanin may function as a neurotransmitter, and it has been shown to coexist with a variety of other peptide and amine neurotransmitters within individual neurons []. Although the precise physiological role of galanin is uncertain, it has a number of pharmacological properties: it stimulates food intake, when injected into the third ventricle of rats; it increases levels of plasma growth hormone and prolactin, and decreases dopamine levels in the median eminence []; and infusion into humans results in hyperglycemia and glucose intolerance, and inhibits pancreatic release of insulin, somatostatin and pancreatic peptide. Galanin also modulates smooth muscle contractility within the gastro-intestinal and genito-urinary tracts, all such activities suggesting that the hormone may play an important role in the nervous modulation of endocrine and smooth muscle function []. This domain represents the galanin message-associated peptide (GMAP) domain which is found C-terminal to the galanin domain in the preprogalanin precursor protein. GMAP sequences in different species show a high degree of homology, but the biological function of the GMAP peptide is not known [].
Probab=20.11 E-value=91 Score=26.50 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=25.1
Q ss_pred CCCccccccCCCCCchhhhHHHHHHHhhcCCeEEE
Q 005212 68 GMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAI 102 (709)
Q Consensus 68 ~~~~~~~~p~~~~~~~~~ew~~f~~~l~~~~~~~~ 102 (709)
+.+=++-+|.| +++-++-=.+||+||+=...=|.
T Consensus 11 ~r~G~~~r~l~-d~nivrTiiEFLtfLhLKEaGAL 44 (62)
T PF06540_consen 11 FRPGSFDRPLA-DDNIVRTIIEFLTFLHLKEAGAL 44 (62)
T ss_pred cccccccCCCc-hhHHHHHHHHHHHHHHHHHhcch
Confidence 34446667888 56778899999999986665443
Done!