Query 005212
Match_columns 709
No_of_seqs 348 out of 2189
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 18:48:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005212.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005212hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmq_A Heat shock protein HSP 99.9 3.4E-22 1.1E-26 204.7 7.4 169 236-415 20-218 (239)
2 3peh_A Endoplasmin homolog; st 99.9 7.3E-22 2.5E-26 206.2 9.4 169 237-416 28-228 (281)
3 1y4s_A Chaperone protein HTPG; 99.8 9.7E-20 3.3E-24 206.3 21.5 172 235-415 7-209 (559)
4 3ied_A Heat shock protein; HSP 99.8 1E-20 3.5E-25 194.7 8.8 168 236-415 28-268 (272)
5 1qy5_A Endoplasmin; GRP94, NEC 99.8 9.1E-21 3.1E-25 197.4 6.8 167 237-415 10-212 (269)
6 3t0h_A Heat shock protein HSP 99.8 1.8E-20 6.1E-25 191.0 7.5 171 234-415 11-211 (228)
7 2gqp_A Endoplasmin; GRP94, HSP 99.8 3.7E-20 1.3E-24 189.4 8.7 168 236-415 13-216 (236)
8 3o0i_A HSP90AA1 protein; HSP90 99.8 3.4E-20 1.2E-24 191.6 7.6 170 235-415 40-239 (256)
9 1yc1_A HSP 86, heat shock prot 99.8 1E-19 3.5E-24 189.1 9.2 164 241-415 55-247 (264)
10 2wer_A ATP-dependent molecular 99.8 1.5E-19 5.2E-24 182.6 10.0 168 237-415 8-206 (220)
11 2cg9_A ATP-dependent molecular 99.8 7.9E-19 2.7E-23 202.1 13.1 170 236-416 7-207 (677)
12 2ior_A Chaperone protein HTPG; 99.8 4.7E-19 1.6E-23 181.0 8.2 170 237-415 29-229 (235)
13 2ioq_A Chaperone protein HTPG; 99.7 8E-19 2.7E-23 201.0 7.4 170 237-415 9-209 (624)
14 2o1u_A Endoplasmin; GRP94, HSP 99.7 1.1E-18 3.7E-23 200.8 7.0 162 242-415 33-229 (666)
15 1b63_A MUTL; DNA mismatch repa 99.6 1E-14 3.5E-19 155.9 19.7 110 234-353 3-119 (333)
16 3h4l_A DNA mismatch repair pro 99.4 9.6E-13 3.3E-17 142.6 9.1 139 236-387 6-150 (367)
17 3na3_A DNA mismatch repair pro 99.3 3E-12 1E-16 137.8 10.8 109 236-353 9-123 (348)
18 1h7s_A PMS1 protein homolog 2; 99.3 5.8E-12 2E-16 136.4 10.1 140 236-387 15-160 (365)
19 2e61_A Zinc finger CW-type PWW 99.1 2.2E-11 7.6E-16 102.2 3.9 44 638-681 10-63 (69)
20 2l7p_A Histone-lysine N-methyl 99.0 5.6E-11 1.9E-15 106.2 2.3 57 637-694 19-84 (100)
21 1ei1_A DNA gyrase B, GYRB; ATP 99.0 5.3E-09 1.8E-13 114.3 15.5 89 254-352 34-137 (391)
22 3fv5_A DNA topoisomerase 4 sub 98.8 6.6E-09 2.3E-13 103.8 8.7 157 255-436 18-192 (201)
23 3cwv_A DNA gyrase, B subunit, 98.8 1.3E-07 4.5E-12 102.6 16.7 89 253-353 29-121 (369)
24 1kij_A DNA gyrase subunit B; t 98.7 4.2E-07 1.5E-11 99.2 19.1 89 254-352 32-135 (390)
25 1zxm_A TOPO IIA ATPase, DNA to 98.6 8.4E-08 2.9E-12 105.1 9.6 89 254-351 52-156 (400)
26 4duh_A DNA gyrase subunit B; s 98.5 1.2E-07 4.1E-12 96.1 8.3 159 254-437 35-210 (220)
27 1s16_A Topoisomerase IV subuni 98.5 1.9E-07 6.5E-12 102.0 10.2 287 256-627 33-361 (390)
28 4emv_A DNA topoisomerase IV, B 98.5 2.4E-07 8.4E-12 94.2 9.1 158 254-437 40-216 (226)
29 1mu5_A Type II DNA topoisomera 98.3 1.4E-06 4.8E-11 97.3 10.1 96 254-353 32-137 (471)
30 2zbk_B Type 2 DNA topoisomeras 98.3 1.5E-06 5E-11 98.5 8.9 96 254-353 31-136 (530)
31 3lnu_A Topoisomerase IV subuni 98.2 1.1E-06 3.8E-11 96.4 6.7 119 256-389 52-189 (408)
32 2q2e_B Type 2 DNA topoisomeras 98.0 3.6E-06 1.2E-10 96.8 6.4 95 254-353 37-141 (621)
33 1pvg_A DNA topoisomerase II; G 97.9 2.4E-05 8.3E-10 86.1 9.1 123 255-390 65-208 (418)
34 3ttz_A DNA gyrase subunit B; p 97.9 2.6E-05 9E-10 77.7 8.4 146 254-437 31-183 (198)
35 1id0_A PHOQ histidine kinase; 97.8 4.3E-05 1.5E-09 69.7 7.8 85 255-350 45-132 (152)
36 1bxd_A ENVZ(290-450), protein 97.7 8.3E-05 2.9E-09 68.9 7.6 87 255-350 48-137 (161)
37 2c2a_A Sensor histidine kinase 97.5 0.00013 4.5E-09 72.7 6.6 90 255-351 139-236 (258)
38 1ysr_A Sensor-type histidine k 97.4 0.00026 8.9E-09 64.6 6.9 86 255-350 47-136 (150)
39 2q8g_A [pyruvate dehydrogenase 97.4 0.00016 5.6E-09 78.1 6.4 90 255-350 244-350 (407)
40 1i58_A Chemotaxis protein CHEA 97.4 6E-05 2E-09 71.9 2.6 88 255-350 48-176 (189)
41 4ew8_A Sensor protein DIVL; si 97.4 0.00026 8.7E-09 70.5 7.2 83 255-350 156-243 (268)
42 3a0y_A Sensor protein; ATP-LID 97.3 0.00024 8.3E-09 64.4 5.1 82 255-349 48-135 (152)
43 2e0a_A Pyruvate dehydrogenase 97.2 0.00023 7.8E-09 76.7 5.6 90 255-350 231-337 (394)
44 3d36_A Sporulation kinase B; G 97.2 0.00034 1.2E-08 68.2 6.3 86 254-351 123-213 (244)
45 1gkz_A [3-methyl-2-oxobutanoat 97.2 0.00016 5.5E-09 77.6 4.1 92 254-351 238-361 (388)
46 1y8o_A [pyruvate dehydrogenase 97.2 0.00023 7.8E-09 77.5 5.1 90 255-350 254-361 (419)
47 3sl2_A Sensor histidine kinase 97.2 0.0003 1E-08 66.2 5.1 92 255-351 44-140 (177)
48 1th8_A Anti-sigma F factor; SP 97.2 0.00039 1.3E-08 63.5 5.6 83 254-350 39-126 (145)
49 2btz_A Pyruvate dehydrogenase 97.1 0.00027 9.1E-09 76.1 4.9 90 255-350 232-337 (394)
50 3jz3_A Sensor protein QSEC; he 97.1 0.00024 8.1E-09 68.3 3.9 85 255-351 118-205 (222)
51 1b3q_A Protein (chemotaxis pro 97.1 0.00049 1.7E-08 74.1 6.1 89 255-351 107-236 (379)
52 3zxo_A Redox sensor histidine 97.0 0.00072 2.5E-08 60.0 5.8 69 254-351 43-115 (129)
53 3ehg_A Sensor kinase (YOCF pro 97.0 0.00032 1.1E-08 63.0 3.0 71 255-350 41-115 (128)
54 1r62_A Nitrogen regulation pro 97.0 0.00017 6E-09 65.8 1.3 90 255-351 49-148 (160)
55 3ehh_A Sensor kinase (YOCF pro 96.6 0.0011 3.8E-08 63.9 3.8 71 255-350 131-205 (218)
56 3a0r_A Sensor protein; four he 96.6 0.0014 4.9E-08 67.2 4.9 83 254-349 244-332 (349)
57 4gfh_A DNA topoisomerase 2; to 96.2 0.011 3.9E-07 72.5 10.2 84 257-349 62-161 (1177)
58 3zxq_A Hypoxia sensor histidin 95.7 0.0078 2.7E-07 53.0 4.1 46 254-306 39-85 (124)
59 2lv9_A Histone-lysine N-methyl 95.4 0.0089 3E-07 53.0 3.4 36 643-678 39-75 (98)
60 3o70_A PHD finger protein 13; 95.4 0.0046 1.6E-07 51.5 1.4 36 643-678 30-66 (68)
61 3o7a_A PHD finger protein 13 v 95.1 0.0046 1.6E-07 48.6 0.5 35 643-677 15-50 (52)
62 1wee_A PHD finger family prote 94.1 0.014 4.8E-07 48.7 1.2 35 644-678 29-65 (72)
63 1we9_A PHD finger family prote 94.0 0.014 4.8E-07 47.4 1.1 37 642-678 18-57 (64)
64 4fpp_A Phosphotransferase; fou 93.0 0.067 2.3E-06 53.6 4.2 82 255-349 147-235 (247)
65 2kgg_A Histone demethylase jar 92.6 0.031 1E-06 43.9 0.9 37 641-677 13-52 (52)
66 1wep_A PHF8; structural genomi 92.6 0.0049 1.7E-07 52.5 -4.1 39 643-681 24-65 (79)
67 2rsd_A E3 SUMO-protein ligase 91.3 0.05 1.7E-06 44.9 0.8 37 643-679 21-65 (68)
68 3kqi_A GRC5, PHD finger protei 90.1 0.043 1.5E-06 46.2 -0.8 37 642-678 21-60 (75)
69 1wew_A DNA-binding family prot 89.7 0.057 1.9E-06 45.8 -0.3 37 642-678 26-71 (78)
70 2k16_A Transcription initiatio 89.1 0.078 2.7E-06 44.3 0.2 37 644-680 31-69 (75)
71 4gut_A Lysine-specific histone 88.7 0.054 1.8E-06 63.9 -1.6 41 644-684 91-147 (776)
72 1weu_A Inhibitor of growth fam 88.4 0.22 7.6E-06 43.7 2.5 39 644-682 47-88 (91)
73 1wen_A Inhibitor of growth fam 87.6 0.28 9.6E-06 41.0 2.6 38 644-682 27-68 (71)
74 2ri7_A Nucleosome-remodeling f 85.4 0.089 3.1E-06 50.5 -1.8 38 643-680 20-60 (174)
75 1wem_A Death associated transc 84.5 0.055 1.9E-06 45.4 -3.3 36 643-678 27-69 (76)
76 3ke6_A Protein RV1364C/MT1410; 83.0 0.91 3.1E-05 49.0 4.6 48 253-305 296-348 (399)
77 1ixm_A SPO0B, protein (sporula 81.3 0.93 3.2E-05 44.6 3.5 50 259-314 110-169 (192)
78 3pur_A Lysine-specific demethy 79.9 0.73 2.5E-05 52.0 2.5 39 640-678 52-93 (528)
79 3lqh_A Histone-lysine N-methyl 78.2 0.44 1.5E-05 46.8 0.1 37 644-680 19-64 (183)
80 2xb1_A Pygopus homolog 2, B-ce 77.4 0.34 1.2E-05 43.4 -0.9 41 640-680 13-62 (105)
81 2g6q_A Inhibitor of growth pro 74.3 0.62 2.1E-05 37.9 -0.1 34 644-678 22-59 (62)
82 3kv5_D JMJC domain-containing 73.7 0.3 1E-05 54.7 -2.8 37 642-678 48-87 (488)
83 3c6w_A P28ING5, inhibitor of g 73.4 0.67 2.3E-05 37.3 -0.1 33 644-677 20-56 (59)
84 4rxn_A Rubredoxin; electron tr 70.8 1.6 5.4E-05 34.8 1.5 26 658-683 24-49 (54)
85 1f62_A Transcription factor WS 67.0 2 6.9E-05 32.9 1.4 33 644-678 13-49 (51)
86 2jmi_A Protein YNG1, ING1 homo 66.9 1.9 6.5E-05 37.7 1.3 33 644-677 37-74 (90)
87 2vpb_A Hpygo1, pygopus homolog 65.6 2.4 8.1E-05 34.8 1.6 37 640-676 18-63 (65)
88 2vnf_A ING 4, P29ING4, inhibit 65.3 1.3 4.3E-05 35.7 -0.1 33 644-677 21-57 (60)
89 1e8j_A Rubredoxin; iron-sulfur 65.3 2.8 9.7E-05 33.0 1.9 23 660-682 26-48 (52)
90 1x4i_A Inhibitor of growth pro 65.2 0.62 2.1E-05 38.8 -2.0 39 643-682 16-58 (70)
91 2kn9_A Rubredoxin; metalloprot 61.9 3.9 0.00013 35.2 2.3 38 645-683 26-73 (81)
92 3kv4_A PHD finger protein 8; e 61.4 0.77 2.6E-05 51.0 -2.7 37 642-678 16-55 (447)
93 1yk4_A Rubredoxin, RD; electro 61.0 3.2 0.00011 32.7 1.5 25 659-683 24-48 (52)
94 2v3b_B Rubredoxin 2, rubredoxi 61.0 3.1 0.0001 33.2 1.4 24 660-683 26-49 (55)
95 1dx8_A Rubredoxin; electron tr 56.0 4.2 0.00015 33.9 1.5 20 664-683 34-53 (70)
96 2yql_A PHD finger protein 21A; 52.0 4.6 0.00016 31.7 1.0 33 644-676 19-53 (56)
97 6rxn_A Rubredoxin; electron tr 51.0 4.7 0.00016 31.0 0.9 19 665-683 25-43 (46)
98 1xwh_A Autoimmune regulator; P 50.2 3.3 0.00011 33.7 -0.0 36 644-680 18-56 (66)
99 2e6r_A Jumonji/ARID domain-con 49.1 4.8 0.00016 35.0 0.8 36 644-680 29-67 (92)
100 2puy_A PHD finger protein 21A; 48.9 3.4 0.00012 32.9 -0.2 36 644-679 15-52 (60)
101 1s24_A Rubredoxin 2; electron 47.6 6.7 0.00023 34.1 1.5 37 646-683 35-81 (87)
102 2ku7_A MLL1 PHD3-CYP33 RRM chi 46.9 3.8 0.00013 36.5 -0.2 33 646-678 2-43 (140)
103 1mm2_A MI2-beta; PHD, zinc fin 46.2 12 0.00042 29.8 2.8 37 644-680 19-57 (61)
104 1ow1_A Smart/HDAC1 associated 43.1 12 0.00043 37.0 2.8 29 88-116 128-163 (195)
105 2lri_C Autoimmune regulator; Z 41.6 9.1 0.00031 31.3 1.3 36 643-678 21-58 (66)
106 2kvo_A Photosystem II reaction 35.6 8.9 0.0003 35.2 0.4 16 83-98 86-101 (120)
107 3o36_A Transcription intermedi 32.2 25 0.00085 33.7 3.0 36 644-679 14-51 (184)
108 2ku3_A Bromodomain-containing 30.6 11 0.00037 31.3 0.1 37 643-680 30-67 (71)
109 3u5n_A E3 ubiquitin-protein li 29.5 30 0.001 33.9 3.0 34 645-678 18-53 (207)
110 2l43_A N-teminal domain from h 28.0 7 0.00024 33.7 -1.6 36 645-681 41-77 (88)
111 4bbq_A Lysine-specific demethy 27.8 21 0.00071 31.6 1.5 34 644-677 73-112 (117)
112 3shb_A E3 ubiquitin-protein li 26.8 41 0.0014 28.3 3.0 34 644-677 39-75 (77)
113 2l5u_A Chromodomain-helicase-D 24.1 34 0.0012 27.2 1.9 35 644-678 21-57 (61)
114 3rsn_A SET1/ASH2 histone methy 24.0 36 0.0012 33.2 2.4 37 643-679 17-59 (177)
115 2e6s_A E3 ubiquitin-protein li 24.0 59 0.002 27.2 3.4 34 643-677 38-75 (77)
116 3asl_A E3 ubiquitin-protein li 22.8 40 0.0014 27.6 2.2 35 643-678 30-68 (70)
117 2ysm_A Myeloid/lymphoid or mix 22.5 22 0.00076 31.3 0.6 35 644-678 67-103 (111)
118 3v43_A Histone acetyltransfera 21.8 51 0.0017 29.2 2.8 35 643-677 74-110 (112)
119 2kwj_A Zinc finger protein DPF 21.3 33 0.0011 30.6 1.4 36 643-678 70-107 (114)
No 1
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.85 E-value=3.4e-22 Score=204.69 Aligned_cols=169 Identities=22% Similarity=0.306 Sum_probs=128.0
Q ss_pred eeecC-HHHHHHhccccccCHHHHHHHHHhcccccCCC----------------ccEEEEEeceeccCCCCcCEEEEEeC
Q 005212 236 FVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSIIDD 298 (709)
Q Consensus 236 ~~~v~-p~~L~slstshi~~~f~AIaELIDNA~DA~A~----------------~I~I~I~~~~~~~~~~~~~~L~I~DN 298 (709)
.|.++ .++|..++.+.|++...+|+|||+||.||.++ .+.|.|.. +.+...|+|.||
T Consensus 20 ~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~L~I~Dn 93 (239)
T 3nmq_A 20 AFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIP------NPQERTLTLVDT 93 (239)
T ss_dssp ECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEEEC
T ss_pred eehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------eCCccEEEEEeC
Confidence 46666 46777778888888899999999999999652 35666653 234679999999
Q ss_pred CCCCCHHhHhhhh-hcccCCC--------CCCCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCcc
Q 005212 299 GHGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 369 (709)
Q Consensus 299 G~GMt~eeL~~~l-~fG~s~k--------~~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~ 369 (709)
|.||++++|.+.+ .+++|.+ ...+...||+||+||+|++| +|++++|.||+++. .++.|.+ .+...
T Consensus 94 GiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~-vadkv~V~Sk~~~~--~~~~W~s--~~~g~ 168 (239)
T 3nmq_A 94 GIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVVVITKHNDD--EQYAWES--SAGGS 168 (239)
T ss_dssp SCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--CSTTE
T ss_pred CCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccc-cCCEEEEEEeeCCC--ceeEEEE--CCCCc
Confidence 9999999997754 3544321 12357899999999998755 99999999999764 4677877 34446
Q ss_pred EEEcCcc--cCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005212 370 LEIPIVS--YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (709)
Q Consensus 370 i~VPi~~--~~~~Gt~I~l~~~~e~-e~~~e~~L~~-I~kySPF~s~~I~ 415 (709)
+.|.... -..+||+|+|+++++. ++.+++.++. |.|||.|..+||.
T Consensus 169 fti~~~~~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~ 218 (239)
T 3nmq_A 169 FTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPIT 218 (239)
T ss_dssp EEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEE
T ss_pred EEEEecCCCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceE
Confidence 6664322 2358999999999865 7788888755 9999999998885
No 2
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.85 E-value=7.3e-22 Score=206.15 Aligned_cols=169 Identities=24% Similarity=0.341 Sum_probs=127.4
Q ss_pred eecC-HHHHHHhccccccCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCC
Q 005212 237 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 299 (709)
Q Consensus 237 ~~v~-p~~L~slstshi~~~f~AIaELIDNA~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG 299 (709)
|++. .++|..++.+.|++...+|+|||+||.||.+ ..+.|.|.. +.+...|+|.|||
T Consensus 28 Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~------d~~~~tLtI~DNG 101 (281)
T 3peh_A 28 YQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISA------NKEKNILSITDTG 101 (281)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred ehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEE------cCCCcEEEEEeCC
Confidence 5555 3556666777788888899999999999975 345666653 2345799999999
Q ss_pred CCCCHHhHhhhh-hcccCCCC---------CCCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCcc
Q 005212 300 HGMTHQDVVRMT-YFGHKQPD---------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 369 (709)
Q Consensus 300 ~GMt~eeL~~~l-~fG~s~k~---------~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~ 369 (709)
.||++++|.+.| .+|+|.+. ..+...||+||+||+|++| +|++++|.||+.+. .++.|.+- +...
T Consensus 102 iGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~-vadkV~V~Sk~~~~--~~~~Wes~--g~g~ 176 (281)
T 3peh_A 102 IGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFL-VADKVIVYTKNNDD--EQYIWEST--ADAK 176 (281)
T ss_dssp CCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEEE--TTSC
T ss_pred CCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhcc-ccCEEEEEEecCCC--CEEEEEEC--CCcc
Confidence 999999998765 45555321 2357899999999998755 99999999999875 47788763 3445
Q ss_pred EEEc-Cc--ccCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHHH
Q 005212 370 LEIP-IV--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (709)
Q Consensus 370 i~VP-i~--~~~~~Gt~I~l~~~~e~-e~~~e~~L~~-I~kySPF~s~~I~e 416 (709)
+.|. .+ .-..+||.|+|+++++. ++..++.++. |.+||.|..+||..
T Consensus 177 fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l 228 (281)
T 3peh_A 177 FTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYL 228 (281)
T ss_dssp EEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEE
T ss_pred EEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEE
Confidence 6553 32 23468999999999765 7788888755 99999999988863
No 3
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.83 E-value=9.7e-20 Score=206.27 Aligned_cols=172 Identities=22% Similarity=0.300 Sum_probs=127.9
Q ss_pred eeeecCH-HHHHHhccccccCHHHHHHHHHhcccccC----------------CCccEEEEEeceeccCCCCcCEEEEEe
Q 005212 235 NFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIID 297 (709)
Q Consensus 235 ~~~~v~p-~~L~slstshi~~~f~AIaELIDNA~DA~----------------A~~I~I~I~~~~~~~~~~~~~~L~I~D 297 (709)
..|++.. +.|+.++.+.|+++..+|+|||+||+||+ +..+.|.|.. +.+...|+|.|
T Consensus 7 ~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~I~I~D 80 (559)
T 1y4s_A 7 RGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISD 80 (559)
T ss_dssp EECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEE------ETTTTEEEEEE
T ss_pred eeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEE------eCCCcEEEEEE
Confidence 3467776 46677787788899999999999999998 5555555542 12347999999
Q ss_pred CCCCCCHHhHhhhh-hcccCCCC----------CCCCCccccccceeeeecccccCeEEEEEeeCCC-CceeEEEeeccC
Q 005212 298 DGHGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLNQ 365 (709)
Q Consensus 298 NG~GMt~eeL~~~l-~fG~s~k~----------~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~-~svg~ls~tf~e 365 (709)
||+||+.+++.+.+ .+|+|.+. ..+...||+||+||+|+++ +|++++|.||+.+. ...++.|.+ .
T Consensus 81 nGiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s--~ 157 (559)
T 1y4s_A 81 NGVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWES--A 157 (559)
T ss_dssp CSSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHH-HEEEEEEEEECSSSCGGGEEEEEE--C
T ss_pred CCCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhh-ccCeEEEEEcCCCCCCCeeEEEEE--e
Confidence 99999999998865 57776532 1256799999999988555 99999999999874 356888876 3
Q ss_pred CCccEEEcCcccCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005212 366 GKDNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (709)
Q Consensus 366 g~~~i~VPi~~~~~~Gt~I~l~~~~e~-e~~~e~~L~~-I~kySPF~s~~I~ 415 (709)
+...+.|.-..-..+||.|+++++++. ++...+.++. |.+||.|..+||.
T Consensus 158 g~~~~~i~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~ 209 (559)
T 1y4s_A 158 GEGEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 209 (559)
T ss_dssp SSSEEEEEEECCCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEE
T ss_pred CCCeeEEeECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceE
Confidence 444555532223468999999998753 6666777755 8999999988764
No 4
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.82 E-value=1e-20 Score=194.71 Aligned_cols=168 Identities=25% Similarity=0.343 Sum_probs=122.5
Q ss_pred eeecCH-HHHHHhccccccCHHHHHHHHHhcccccCCC------------------------------------------
Q 005212 236 FVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKAT------------------------------------------ 272 (709)
Q Consensus 236 ~~~v~p-~~L~slstshi~~~f~AIaELIDNA~DA~A~------------------------------------------ 272 (709)
.|+..- ++|.-+..+.|++....|+|||+||.||..+
T Consensus 28 ~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (272)
T 3ied_A 28 NFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKRIILENNKLIKDAEVVTNEEIKNETEKEKTENVNESTDKKE 107 (272)
T ss_dssp ECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------------
T ss_pred chHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHHHhccChhhhhcccccccccccccccccccccccccccccc
Confidence 355544 4445556666666666699999999999421
Q ss_pred ----------ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhh-hcccCCC--------C-CCCCCccccccce
Q 005212 273 ----------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT-YFGHKQP--------D-ADDPNRIGRFGVG 332 (709)
Q Consensus 273 ----------~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l-~fG~s~k--------~-~~~~~~IG~fGiG 332 (709)
.+.|.|.. +.+...|+|.|||.||++++|.+.| .+++|.+ . ..+...|||||+|
T Consensus 108 ~~~e~~~~~~~l~I~I~~------Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVG 181 (272)
T 3ied_A 108 NVEEEKNDIKKLIIKIKP------DKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVG 181 (272)
T ss_dssp ------CGGGGCCEEEEE------ETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCG
T ss_pred ccccccCCCCCcEEEEEE------eCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccce
Confidence 13455542 2346799999999999999999865 4555421 1 1357899999999
Q ss_pred eeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEcCcc--------cCCCCcEEEEEeccch-hhhhhhhhhh-
Q 005212 333 FKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVS--------YYRKGQFMELDTVVQS-EATAKYNLKS- 402 (709)
Q Consensus 333 fKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VPi~~--------~~~~Gt~I~l~~~~e~-e~~~e~~L~~- 402 (709)
|+||+| +|++++|.|| ++ ..++.|.+ .+...+.|.... ...+||+|+|+++++. ++..++.++.
T Consensus 182 FySaFm-VAdkV~V~Sk-~d--d~~~~WeS--~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~l 255 (272)
T 3ied_A 182 FYSSFL-VSNRVEVYTK-KE--DQIYRWSS--DLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKEL 255 (272)
T ss_dssp GGGGGG-TEEEEEEEEE-SS--SCEEEEEE--CSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHH
T ss_pred eheeec-cCCEEEEEEc-CC--CceEEEEE--CCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHH
Confidence 998655 9999999999 33 45788887 455566663222 3468999999999865 7888888855
Q ss_pred hhhcCCCcchhHH
Q 005212 403 IKEFSPFNKYLIG 415 (709)
Q Consensus 403 I~kySPF~s~~I~ 415 (709)
|.|||.|..+||.
T Consensus 256 ikkys~fi~~PI~ 268 (272)
T 3ied_A 256 IKKYSEFIKFPIE 268 (272)
T ss_dssp HHHHCTTCCSCEE
T ss_pred HHHHHhCCCCCeE
Confidence 9999999998875
No 5
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.81 E-value=9.1e-21 Score=197.44 Aligned_cols=167 Identities=19% Similarity=0.320 Sum_probs=123.9
Q ss_pred eecC-HHHHHHhccccccCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCC
Q 005212 237 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 299 (709)
Q Consensus 237 ~~v~-p~~L~slstshi~~~f~AIaELIDNA~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG 299 (709)
|++. .++|+.++.+.|+++..+|+|||+||+||++ ..+.|.|.. +.+...|+|.|||
T Consensus 10 Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~------d~~~~~l~I~DnG 83 (269)
T 1qy5_A 10 FQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTG 83 (269)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred ehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEE------cCCceEEEEEECC
Confidence 4443 3455666777777888899999999999976 446666653 2346799999999
Q ss_pred CCCCHHhHhhhh-hcccCCCC-------------CCCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccC
Q 005212 300 HGMTHQDVVRMT-YFGHKQPD-------------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQ 365 (709)
Q Consensus 300 ~GMt~eeL~~~l-~fG~s~k~-------------~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~e 365 (709)
+||+.++|.+.| .+|+|.+. ..+...||+||+||++++| +|++++|.||+.+. .++.|.+ .
T Consensus 84 iGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~-va~~v~V~Sk~~~~--~~~~w~s--~ 158 (269)
T 1qy5_A 84 VGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFL-VADKVIVTSKHNND--TQHIWES--D 158 (269)
T ss_dssp CCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGG-TEEEEEEEEECTTS--CCEEEEE--C
T ss_pred CCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhh-ccceEEEEEEecCC--cEEEEEE--e
Confidence 999999998765 46665210 0356789999999998755 99999999999875 4677765 3
Q ss_pred CCccEEEcCcc---cCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005212 366 GKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (709)
Q Consensus 366 g~~~i~VPi~~---~~~~Gt~I~l~~~~e~-e~~~e~~L~~-I~kySPF~s~~I~ 415 (709)
+ ..+.|.... -..+||.|+|+++.+. ++..++.++. |.+||.|..+||.
T Consensus 159 g-g~~~i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~ 212 (269)
T 1qy5_A 159 S-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 212 (269)
T ss_dssp S-SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEE
T ss_pred C-CEEEEEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeE
Confidence 4 456553322 2358999999998754 5666777755 8899999998886
No 6
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.81 E-value=1.8e-20 Score=190.98 Aligned_cols=171 Identities=22% Similarity=0.295 Sum_probs=127.5
Q ss_pred ceeeecC-HHHHHHhccccccCHHHHHHHHHhcccccCCC----------------ccEEEEEeceeccCCCCcCEEEEE
Q 005212 234 KNFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSII 296 (709)
Q Consensus 234 ~~~~~v~-p~~L~slstshi~~~f~AIaELIDNA~DA~A~----------------~I~I~I~~~~~~~~~~~~~~L~I~ 296 (709)
+..|+++ .++|..++.+.|+++..+|+|||+||+||+++ .+.|.|.. +.+...|.|.
T Consensus 11 ~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~------d~~~~~i~V~ 84 (228)
T 3t0h_A 11 TFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTIV 84 (228)
T ss_dssp EEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEE------ETTTTEEEEE
T ss_pred ceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEE------eCCeeEEEEE
Confidence 3446666 46677778888888999999999999999864 46666653 2356899999
Q ss_pred eCCCCCCHHhHhhhh-hcccCCCC--------CCCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCC
Q 005212 297 DDGHGMTHQDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK 367 (709)
Q Consensus 297 DNG~GMt~eeL~~~l-~fG~s~k~--------~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~ 367 (709)
|||.||+++++..++ .+++|.+. ..+...+|+||+||+|+++ +|++++|.||+.+. .|+.|.+ ++.
T Consensus 85 DnG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~-vad~v~V~Sr~~~~--~~~~w~~--~g~ 159 (228)
T 3t0h_A 85 DTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWES--SAG 159 (228)
T ss_dssp ECSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CEEEEEE--CST
T ss_pred eCCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhc-cCCEEEEEEecCCC--CcEEEEE--cCC
Confidence 999999999998765 45554321 1356899999999998755 99999999999863 5778876 333
Q ss_pred ccEEEc-Cc-ccCCCCcEEEEEeccch-hhhhhhhh-hhhhhcCCCcchhHH
Q 005212 368 DNLEIP-IV-SYYRKGQFMELDTVVQS-EATAKYNL-KSIKEFSPFNKYLIG 415 (709)
Q Consensus 368 ~~i~VP-i~-~~~~~Gt~I~l~~~~e~-e~~~e~~L-~~I~kySPF~s~~I~ 415 (709)
..+.|. .. .-..+||.|+++++.+. ++.+.+.+ ++|.+|+.|..+||.
T Consensus 160 ~~~~v~~~~~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~ 211 (228)
T 3t0h_A 160 GSFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 211 (228)
T ss_dssp TEEEEEECCSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEE
T ss_pred ceEEEeecCCCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeE
Confidence 445543 22 23458999999998764 56666666 449999999988775
No 7
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.80 E-value=3.7e-20 Score=189.38 Aligned_cols=168 Identities=19% Similarity=0.306 Sum_probs=119.3
Q ss_pred eeecC-HHHHHHhccccccCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeC
Q 005212 236 FVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDD 298 (709)
Q Consensus 236 ~~~v~-p~~L~slstshi~~~f~AIaELIDNA~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~DN 298 (709)
.|++. ...++.++.+.|+.+..+|+|||+||+||+| ..+.|.|.. +.+...|.|.||
T Consensus 13 ~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~------d~~~~~i~I~Dn 86 (236)
T 2gqp_A 13 AFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDT 86 (236)
T ss_dssp CCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE------ETTTTEEEEEEC
T ss_pred chhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEE------cCCCCEEEEEEC
Confidence 35555 3456666777778899999999999999987 335565542 123578999999
Q ss_pred CCCCCHHhHhhhh-hcccCCCC--------C-----CCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeecc
Q 005212 299 GHGMTHQDVVRMT-YFGHKQPD--------A-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLN 364 (709)
Q Consensus 299 G~GMt~eeL~~~l-~fG~s~k~--------~-----~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~ 364 (709)
|+||++++|.+.+ .+|+|.+. . .+...||+||+||+++ +.+|++++|.||+.+. .++.|..
T Consensus 87 G~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~-f~va~~v~V~Sr~~~~--~~~~w~~-- 161 (236)
T 2gqp_A 87 GVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSA-FLVADKVIVTSKHNND--TQHIWES-- 161 (236)
T ss_dssp SCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGG-GGTEEEEEEEEECTTS--CCEEEEE--
T ss_pred CcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhH-hhcCCEEEEEEeCCCC--ceEEEEE--
Confidence 9999999998765 57766321 0 3457899999999875 5599999999999875 3677765
Q ss_pred CCCccEEEcCcc---cCCCCcEEEEEeccch-hhhhhhhh-hhhhhcCCCcchhHH
Q 005212 365 QGKDNLEIPIVS---YYRKGQFMELDTVVQS-EATAKYNL-KSIKEFSPFNKYLIG 415 (709)
Q Consensus 365 eg~~~i~VPi~~---~~~~Gt~I~l~~~~e~-e~~~e~~L-~~I~kySPF~s~~I~ 415 (709)
++ ..+.|.... -..+||.|+++++.+. ++.+.+.+ ++|.+|+.|..+||.
T Consensus 162 ~g-g~~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~ 216 (236)
T 2gqp_A 162 DS-NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 216 (236)
T ss_dssp SS-SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEE
T ss_pred eC-CEEEEEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceE
Confidence 33 455553222 2357999999998754 45556666 459999999998875
No 8
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.80 E-value=3.4e-20 Score=191.62 Aligned_cols=170 Identities=23% Similarity=0.304 Sum_probs=126.7
Q ss_pred eeeecC-HHHHHHhccccccCHHHHHHHHHhcccccCCC----------------ccEEEEEeceeccCCCCcCEEEEEe
Q 005212 235 NFVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKAT----------------KLEISIESIYFKKAGKDIPMLSIID 297 (709)
Q Consensus 235 ~~~~v~-p~~L~slstshi~~~f~AIaELIDNA~DA~A~----------------~I~I~I~~~~~~~~~~~~~~L~I~D 297 (709)
-.|+.. .++|..++.+.|++...+|+|||+||+||+++ .+.|.|.. +.+...|+|.|
T Consensus 40 ~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~------d~~~~~I~I~D 113 (256)
T 3o0i_A 40 FAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIP------NKQDRTLTIVD 113 (256)
T ss_dssp EECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEE------ETTTTEEEEEE
T ss_pred EEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEE------cCCceEEEEec
Confidence 346666 35566667777888889999999999999864 46666653 23568999999
Q ss_pred CCCCCCHHhHhhhh-hcccCCCC--------CCCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCc
Q 005212 298 DGHGMTHQDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD 368 (709)
Q Consensus 298 NG~GMt~eeL~~~l-~fG~s~k~--------~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~ 368 (709)
||.||++++|..++ .+++|.+. ..+...+|+||+||+|+++ ++++++|.||+.+. .|+.|.+ ++..
T Consensus 114 nG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~-Vadkv~V~Sr~~~~--~g~~w~s--~gg~ 188 (256)
T 3o0i_A 114 TGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWES--SAGG 188 (256)
T ss_dssp CSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS--CEEEEEE--CSTT
T ss_pred CCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhc-cCCeEEEEEcCCCC--ceEEEEE--eccc
Confidence 99999999998765 45554221 1357899999999998755 99999999999763 5788876 3334
Q ss_pred cEEEcCc--ccCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005212 369 NLEIPIV--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (709)
Q Consensus 369 ~i~VPi~--~~~~~Gt~I~l~~~~e~-e~~~e~~L~~-I~kySPF~s~~I~ 415 (709)
.+.|.-. .-..+||+|+++++.+. ++.+.+.++. |.+||.|..+||.
T Consensus 189 ~~~v~~~~~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~ 239 (256)
T 3o0i_A 189 SFTVRTDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 239 (256)
T ss_dssp EEEEEECCSSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEE
T ss_pred eEEEeeCCCCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeE
Confidence 5555321 22358999999998754 6666677644 9999999988775
No 9
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.79 E-value=1e-19 Score=189.11 Aligned_cols=164 Identities=23% Similarity=0.300 Sum_probs=123.8
Q ss_pred HHHHHHhccccccCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCH
Q 005212 241 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTH 304 (709)
Q Consensus 241 p~~L~slstshi~~~f~AIaELIDNA~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ 304 (709)
.+.+..++...++++..+|+|||+||+||+| +.+.|.|.. +.+...|+|.|||.||++
T Consensus 55 ~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~------d~~~~~I~I~DnG~GMs~ 128 (264)
T 1yc1_A 55 AQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIP------NKQDRTLTIVDTGIGMTK 128 (264)
T ss_dssp HHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEE------ETTTTEEEEEECSCCCCH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEE------CCCeeEEEEEECCcCCCH
Confidence 3566777777788999999999999999998 778888763 234678999999999999
Q ss_pred HhHhhhh-hcccCCCC--------CCCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEc-C
Q 005212 305 QDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIP-I 374 (709)
Q Consensus 305 eeL~~~l-~fG~s~k~--------~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VP-i 374 (709)
++|.+++ .+|+|.+. ..+...||+||+||+++++ ++++++|.||+.+. .++.|... +...+.|. .
T Consensus 129 edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~-va~~v~V~Sr~~~~--~~~~w~~~--~~~~~~i~~~ 203 (264)
T 1yc1_A 129 ADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYL-VAEKVTVITKHNDD--EQYAWESS--AGGSFTVRTD 203 (264)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHH-HEEEEEEEEECTTS--CCEEEEEC--STTEEEEEEC
T ss_pred HHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCcccccc-CCCEEEEEEecCCC--ceEEEEEc--CCceEEEeec
Confidence 9997765 57776532 2356799999999998665 99999999999874 46777663 23344442 2
Q ss_pred cc-cCCCCcEEEEEeccch-hhhhhhhh-hhhhhcCCCcchhHH
Q 005212 375 VS-YYRKGQFMELDTVVQS-EATAKYNL-KSIKEFSPFNKYLIG 415 (709)
Q Consensus 375 ~~-~~~~Gt~I~l~~~~e~-e~~~e~~L-~~I~kySPF~s~~I~ 415 (709)
+. -...||.|+++++.+. ++.+.+.+ ++|.+|+.|..+||.
T Consensus 204 ~~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~ 247 (264)
T 1yc1_A 204 TGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPIT 247 (264)
T ss_dssp CSSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEE
T ss_pred CCCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEE
Confidence 11 2357999999987654 45555665 459999999988775
No 10
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.79 E-value=1.5e-19 Score=182.60 Aligned_cols=168 Identities=22% Similarity=0.294 Sum_probs=122.9
Q ss_pred eecC-HHHHHHhccccccCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeCC
Q 005212 237 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDDG 299 (709)
Q Consensus 237 ~~v~-p~~L~slstshi~~~f~AIaELIDNA~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~DNG 299 (709)
|+++ ...++.++.+.++++..+|+|||+||+||+| ..+.|.+.. +.+...|.|.|||
T Consensus 8 f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~------~~~~~~i~I~DnG 81 (220)
T 2wer_A 8 FQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITP------KPEQKVLEIRDSG 81 (220)
T ss_dssp CCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEE------EGGGTEEEEEECS
T ss_pred eeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEE------CCCCCEEEEEEcC
Confidence 4444 4466666777778889999999999999987 455666653 1245789999999
Q ss_pred CCCCHHhHhhhh-hcccCCC--------CCCCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccE
Q 005212 300 HGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNL 370 (709)
Q Consensus 300 ~GMt~eeL~~~l-~fG~s~k--------~~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i 370 (709)
+||+++++.+.+ .+|+|.+ ...+...+|+||+||+++ +.++++++|.|++.+. .++.|... +...+
T Consensus 82 ~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~-~~~~~~v~v~S~~~~~--~~~~~~~~--~~~~~ 156 (220)
T 2wer_A 82 IGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSNDD--EQYIWESN--AGGSF 156 (220)
T ss_dssp CCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTTS--CCEEEEEC--SSSEE
T ss_pred CCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHh-hhcCCeeEEEEecCCC--ceeEEEeC--CCCce
Confidence 999999998765 5776632 123567999999999875 5699999999999874 36777653 33345
Q ss_pred EEcCcc---cCCCCcEEEEEeccch-hhhhhhhhh-hhhhcCCCcchhHH
Q 005212 371 EIPIVS---YYRKGQFMELDTVVQS-EATAKYNLK-SIKEFSPFNKYLIG 415 (709)
Q Consensus 371 ~VPi~~---~~~~Gt~I~l~~~~e~-e~~~e~~L~-~I~kySPF~s~~I~ 415 (709)
.+.... -..+||.|+++++.+. ++.+.+.+. .|.+|+.|..+||.
T Consensus 157 ~i~~~~~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~ 206 (220)
T 2wer_A 157 TVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQ 206 (220)
T ss_dssp EEEECSSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEE
T ss_pred EeecccCCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceE
Confidence 443221 2357999999998654 455556664 48999999988775
No 11
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.77 E-value=7.9e-19 Score=202.07 Aligned_cols=170 Identities=22% Similarity=0.291 Sum_probs=127.4
Q ss_pred eeecC-HHHHHHhccccccCHHHHHHHHHhcccccCC----------------CccEEEEEeceeccCCCCcCEEEEEeC
Q 005212 236 FVRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIIDD 298 (709)
Q Consensus 236 ~~~v~-p~~L~slstshi~~~f~AIaELIDNA~DA~A----------------~~I~I~I~~~~~~~~~~~~~~L~I~DN 298 (709)
.|+.. .+.|+.++.+.|++...+|+|||+||+||++ ..+.|.|.. +.+...|+|.||
T Consensus 7 ~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~------d~~~~~I~I~Dn 80 (677)
T 2cg9_A 7 EFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITP------KPEQKVLEIRDS 80 (677)
T ss_dssp ECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEE------EGGGTEEEEEEC
T ss_pred ehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEE------eCCCCEEEEEEC
Confidence 36666 4667777777888888999999999999974 335555542 123478999999
Q ss_pred CCCCCHHhHhhhh-hcccCCC--------CCCCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCcc
Q 005212 299 GHGMTHQDVVRMT-YFGHKQP--------DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDN 369 (709)
Q Consensus 299 G~GMt~eeL~~~l-~fG~s~k--------~~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~ 369 (709)
|+||+.+++.+++ .+++|.+ ...+...||+||+||++| |.++++++|.||+.+. .++.|.+ .+...
T Consensus 81 GiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySa-f~vadkV~V~Sk~~~~--~~~~W~s--~g~~~ 155 (677)
T 2cg9_A 81 GIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSNDD--EQYIWES--NAGGS 155 (677)
T ss_dssp SCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGG-GGTEEEEEEEEECTTS--CEEEEEE--CSSSE
T ss_pred CCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHH-hhcCcEEEEEEccCCC--ceEEEEE--cCCce
Confidence 9999999998876 4666532 123567999999999987 5599999999999874 4788876 34445
Q ss_pred EEEcC-c--ccCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHHH
Q 005212 370 LEIPI-V--SYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIGE 416 (709)
Q Consensus 370 i~VPi-~--~~~~~Gt~I~l~~~~e~-e~~~e~~L~~-I~kySPF~s~~I~e 416 (709)
+.|.. + .-..+||.|+++++.+. ++..++.++. |.+||.|..+||..
T Consensus 156 ~ti~~~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l 207 (677)
T 2cg9_A 156 FTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQL 207 (677)
T ss_dssp EEEEECCSSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEE
T ss_pred EEEeecCCCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEE
Confidence 55532 1 23458999999998754 6777777755 88999999998863
No 12
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.76 E-value=4.7e-19 Score=180.99 Aligned_cols=170 Identities=21% Similarity=0.302 Sum_probs=121.9
Q ss_pred eecC-HHHHHHhccccccCHHHHHHHHHhcccccC----------------CCccEEEEEeceeccCCCCcCEEEEEeCC
Q 005212 237 VRAD-PSYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 299 (709)
Q Consensus 237 ~~v~-p~~L~slstshi~~~f~AIaELIDNA~DA~----------------A~~I~I~I~~~~~~~~~~~~~~L~I~DNG 299 (709)
|.+. ..++..++...++++..||+|||+||+||+ ++.+.|.|.. +.+...|.|.|||
T Consensus 29 f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~------~~~~~~i~I~DnG 102 (235)
T 2ior_A 29 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDNG 102 (235)
T ss_dssp CCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred eehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEE------cCCceEEEEEECC
Confidence 4444 344555566677789999999999999998 5556666653 1234679999999
Q ss_pred CCCCHHhHhhhh-hcccCCCC------C----CCCCccccccceeeeecccccCeEEEEEeeCCCC-ceeEEEeeccCCC
Q 005212 300 HGMTHQDVVRMT-YFGHKQPD------A----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSR-SIAFLSQSLNQGK 367 (709)
Q Consensus 300 ~GMt~eeL~~~l-~fG~s~k~------~----~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~-svg~ls~tf~eg~ 367 (709)
.||++++|..++ .+|+|.+. . .+...+|+||+||+++ |.++++++|.||+.+.. ..++.|... +.
T Consensus 103 ~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~-~~~~~~v~V~Sr~~~~~~~~~~~w~~~--~~ 179 (235)
T 2ior_A 103 VGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSA-FIVADKVTVRTRAAGEKPENGVFWESA--GE 179 (235)
T ss_dssp SCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGG-GGTEEEEEEEEECTTSCGGGEEEEEEC--SS
T ss_pred CCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHH-HhCcCeEEEEEecCCCCCceeEEEEec--CC
Confidence 999999998754 67776431 0 1356899999999875 66999999999998752 467777763 33
Q ss_pred ccEEEcCcccCCCCcEEEEEeccch-hhhhhhhh-hhhhhcCCCcchhHH
Q 005212 368 DNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNL-KSIKEFSPFNKYLIG 415 (709)
Q Consensus 368 ~~i~VPi~~~~~~Gt~I~l~~~~e~-e~~~e~~L-~~I~kySPF~s~~I~ 415 (709)
..+.+....-...||.|+++++.+. ++.+...+ +.|.+|+.|..+||.
T Consensus 180 ~~~~i~~~~~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~ 229 (235)
T 2ior_A 180 GEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 229 (235)
T ss_dssp SEEEEEEECCCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEE
T ss_pred CcEEEeeCCCCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeE
Confidence 3444432223357999999998653 44555555 559999999887764
No 13
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.74 E-value=8e-19 Score=201.02 Aligned_cols=170 Identities=22% Similarity=0.311 Sum_probs=121.3
Q ss_pred eecCH-HHHHHhccccccCHHHHHHHHHhcccccC----------------CCccEEEEEeceeccCCCCcCEEEEEeCC
Q 005212 237 VRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDG 299 (709)
Q Consensus 237 ~~v~p-~~L~slstshi~~~f~AIaELIDNA~DA~----------------A~~I~I~I~~~~~~~~~~~~~~L~I~DNG 299 (709)
|++.. +.|+.++.+.|+++..+|+|||+||+||+ +..+.|.|.. +.+...|+|.|||
T Consensus 9 Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~------d~~~~~I~I~DnG 82 (624)
T 2ioq_A 9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF------DKDKRTLTISDNG 82 (624)
T ss_dssp ------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEE------ETTTTEEEEEECS
T ss_pred eeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEE------eCCCcEEEEEECC
Confidence 44444 35666676677888899999999999998 5555666552 1234799999999
Q ss_pred CCCCHHhHhhhh-hcccCCCC----------CCCCCccccccceeeeecccccCeEEEEEeeCCC-CceeEEEeeccCCC
Q 005212 300 HGMTHQDVVRMT-YFGHKQPD----------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADS-RSIAFLSQSLNQGK 367 (709)
Q Consensus 300 ~GMt~eeL~~~l-~fG~s~k~----------~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~-~svg~ls~tf~eg~ 367 (709)
+||+.+++.+.+ .+|+|.+. ..+...||+||+||+|+++ +|++++|.||+.+. ...++.|.+. +.
T Consensus 83 iGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~-VadkV~V~Sr~~~~~~~~~~~w~s~--g~ 159 (624)
T 2ioq_A 83 VGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFI-VADKVTVRTRAAGEKPENGVFWESA--GE 159 (624)
T ss_dssp CCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHH-HEEEEEEEEECTTSCGGGEEEEEEC--SS
T ss_pred CCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHh-cCCeEEEEECCCCCCCCeeEEEEEe--CC
Confidence 999999998865 46766431 1356799999999988555 99999999999873 4568888763 33
Q ss_pred ccEEEcCcccCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005212 368 DNLEIPIVSYYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (709)
Q Consensus 368 ~~i~VPi~~~~~~Gt~I~l~~~~e~-e~~~e~~L~~-I~kySPF~s~~I~ 415 (709)
..+.|.-..-..+||.|+++++.+. ++...+.++. |.+||.|..+||.
T Consensus 160 ~~~~i~~~~~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~ 209 (624)
T 2ioq_A 160 GEYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVE 209 (624)
T ss_dssp SCCEEEEECCSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEE
T ss_pred CeEEEEECCCCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceE
Confidence 3444432223468999999998753 6666777755 8999999988764
No 14
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.74 E-value=1.1e-18 Score=200.83 Aligned_cols=162 Identities=20% Similarity=0.325 Sum_probs=108.5
Q ss_pred HHHHHhccccccCHHHHHHHHHhcccccC----------------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005212 242 SYLQTLGQAHSGWIFGAIAELVDNSRDAK----------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (709)
Q Consensus 242 ~~L~slstshi~~~f~AIaELIDNA~DA~----------------A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (709)
+.|+.++.+.|+++..+|+|||+||+||+ +..+.|.|.. +.+...|+|.|||+||+.+
T Consensus 33 ~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~------d~~~~~I~I~DnGiGMt~e 106 (666)
T 2o1u_A 33 RMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC------DKEKNLLHVTDTGVGMTRE 106 (666)
T ss_dssp -CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEE------ETTTTEEEEEECSCCCCHH
T ss_pred HHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEE------eCCCCEEEEEECCCCCCHH
Confidence 34445566677788889999999999998 6556666653 2235789999999999999
Q ss_pred hHhhhh-hcccCCC--------CC-----CCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEE
Q 005212 306 DVVRMT-YFGHKQP--------DA-----DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLE 371 (709)
Q Consensus 306 eL~~~l-~fG~s~k--------~~-----~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~ 371 (709)
++.+.+ .+++|.+ .. .+...||+||+||+++ |.+|++++|.||+.+. .++.|.+ ++ ..+.
T Consensus 107 dl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySa-f~vAdkV~V~Sr~~~~--~~~~W~s--~g-g~~t 180 (666)
T 2o1u_A 107 ELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSA-FLVADKVIVTSKHNND--TQHIWES--DS-NEFS 180 (666)
T ss_dssp HHHHHTTC-------------------------------CTTGGG-GGTEEEEEEEEECTTS--CCEEEEE--SS-SCCE
T ss_pred HHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhH-HHhcCEEEEEEeeCCC--ceEEEEE--eC-CeEE
Confidence 998865 4555522 11 3567899999999986 5599999999999875 3777776 33 4455
Q ss_pred EcCcc---cCCCCcEEEEEeccch-hhhhhhhhhh-hhhcCCCcchhHH
Q 005212 372 IPIVS---YYRKGQFMELDTVVQS-EATAKYNLKS-IKEFSPFNKYLIG 415 (709)
Q Consensus 372 VPi~~---~~~~Gt~I~l~~~~e~-e~~~e~~L~~-I~kySPF~s~~I~ 415 (709)
|.... -..+||.|+++++.+. ++.+.+.++. |.+||.|..+||.
T Consensus 181 i~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~ 229 (666)
T 2o1u_A 181 VIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIY 229 (666)
T ss_dssp EEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEE
T ss_pred EEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceE
Confidence 43222 2357999999998754 6666777754 8999999988764
No 15
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.62 E-value=1e-14 Score=155.90 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=87.5
Q ss_pred ceeeecCHHHHHHh-ccccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhh-
Q 005212 234 KNFVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMT- 311 (709)
Q Consensus 234 ~~~~~v~p~~L~sl-stshi~~~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l- 311 (709)
|.+..+++...+.+ +...+.++..||+|||+||+||+|+.|.|.+.. .+...|+|.|||.||+++++..++
T Consensus 3 m~I~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA~a~~I~I~i~~-------~~~~~i~V~DnG~Gi~~~~l~~~~~ 75 (333)
T 1b63_A 3 MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIER-------GGAKLIRIRDNGCGIKKDELALALA 75 (333)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGHHHHHS
T ss_pred CcceECCHHHHHHHhcCCchhCHHHHHHHHHHHHHHCCCCeEEEEEEe-------CCceEEEEEEcCCCcCHHHHHHhhh
Confidence 45788999999998 445567999999999999999999999998872 234689999999999999999876
Q ss_pred hcccCCCCCC-----CCCccccccceeeeecccccCeEEEEEeeCCC
Q 005212 312 YFGHKQPDAD-----DPNRIGRFGVGFKTGAMRLGKDALVLTQTADS 353 (709)
Q Consensus 312 ~fG~s~k~~~-----~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~ 353 (709)
.|+++ |... ....+|.+|+|+.+. ..++ +++|.||+.+.
T Consensus 76 ~~~ts-K~~~~~d~~~~~~~G~~G~gl~si-~~vs-~l~v~s~~~~~ 119 (333)
T 1b63_A 76 RHATS-KIASLDDLEAIISLGFRGEALASI-SSVS-RLTLTSRTAEQ 119 (333)
T ss_dssp TTCCS-SCCSHHHHHTCCSSCCSSCHHHHH-HTTS-EEEEEEECTTC
T ss_pred ccccc-CccccchhhhccccCccccchhhh-hcCC-cEEEEEecCCC
Confidence 46555 3211 235789999999543 4466 89999999875
No 16
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.35 E-value=9.6e-13 Score=142.60 Aligned_cols=139 Identities=17% Similarity=0.174 Sum_probs=92.5
Q ss_pred eeecCHHHHHHh-ccccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcc
Q 005212 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFG 314 (709)
Q Consensus 236 ~~~v~p~~L~sl-stshi~~~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG 314 (709)
+..+++..++.+ +...+..+..||.|||+||+||+|+.|.|.+. ..+...|+|.|||.||+++++..++.-+
T Consensus 6 I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~-------~~~~~~i~V~DnG~Gi~~~~l~~~~~~~ 78 (367)
T 3h4l_A 6 IHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFK-------DYGLESIECSDNGDGIDPSNYEFLALKH 78 (367)
T ss_dssp -------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEE-------TTTTSEEEEEECSCCCCGGGTTTTTCCE
T ss_pred ceeCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCCCEEEEEEE-------eCCEEEEEEEECCCCcChhHhccceecc
Confidence 577899999999 45566899999999999999999999999885 3456799999999999999998876533
Q ss_pred cCCC--CCCC---CCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEcCcccCCCCcEEEEE
Q 005212 315 HKQP--DADD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (709)
Q Consensus 315 ~s~k--~~~~---~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VPi~~~~~~Gt~I~l~ 387 (709)
.+.| ..++ ....|..|.|+.+ ...++ +++|.||+.+ ..++.+.. . +...+..+.+.-...||+|++.
T Consensus 79 ~tsK~~~~~Dl~~i~t~GfrGeaL~S-i~avS-~l~V~sr~~~--~~~~~~~~-~-~~G~~~~~~~~~~~~GTtV~v~ 150 (367)
T 3h4l_A 79 YTSKIAKFQDVAKVQTLGFRGEALSS-LCGIA-KLSVITTTSP--PKADKLEY-D-MVGHITSKTTTSRNKGTTVLVS 150 (367)
T ss_dssp EC---------CCCCEEEETTHHHHH-HHHSS-EEEEEEESST--TCEEEEEE-C-TTCCEEEEEEECCSSEEEEEEE
T ss_pred ccCcCCchhhhhhhhccCccchHHHH-hhccC-EEEEEEEECC--CCEEEEEE-c-CCCcEEeeccccCCCCeEEEEc
Confidence 2222 2222 3456888999854 44577 6999999987 44554443 2 1223332223334579999874
No 17
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.33 E-value=3e-12 Score=137.79 Aligned_cols=109 Identities=20% Similarity=0.282 Sum_probs=83.5
Q ss_pred eeecCHHHHHHh-ccccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcc
Q 005212 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFG 314 (709)
Q Consensus 236 ~~~v~p~~L~sl-stshi~~~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG 314 (709)
+..+++..++.+ +...+..+..||.|||+||+||+|+.|.|.+.. .+...|.|.|||.||+++++..++..+
T Consensus 9 I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~-------~~~~~I~V~DnG~GI~~~~l~~~~~~~ 81 (348)
T 3na3_A 9 IRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKE-------GGLKLIQIQDNGTGIRKEDLDIVCERF 81 (348)
T ss_dssp CCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGGGTTTSTT
T ss_pred cccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCCEEEEEEEe-------CCEEEEEEEECCcCcChHHhhhhhccc
Confidence 578999999999 455668999999999999999999999998862 235679999999999999999877533
Q ss_pred cCCCC--CCC---CCccccccceeeeecccccCeEEEEEeeCCC
Q 005212 315 HKQPD--ADD---PNRIGRFGVGFKTGAMRLGKDALVLTQTADS 353 (709)
Q Consensus 315 ~s~k~--~~~---~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~ 353 (709)
++.|. .++ ....|.+|.|+.+ ...++ +++|.||+++.
T Consensus 82 ~tsK~~~~~dl~~i~s~GfrGeaL~S-i~avs-~l~v~sr~~~~ 123 (348)
T 3na3_A 82 TTSKLQSFEDLASISTYGFRGEALAS-ISHVA-HVTITTKTADG 123 (348)
T ss_dssp CCSSCCCC---------CCTTCHHHH-HHHSS-EEEEEEECTTC
T ss_pred cccccCcchhhhccccCCcCChHHHH-hhccc-EEEEEEEECCC
Confidence 33332 122 3567999999944 44466 89999999875
No 18
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.28 E-value=5.8e-12 Score=136.38 Aligned_cols=140 Identities=16% Similarity=0.229 Sum_probs=86.1
Q ss_pred eeecCHHHHHHh-ccccccCHHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh-c
Q 005212 236 FVRADPSYLQTL-GQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-F 313 (709)
Q Consensus 236 ~~~v~p~~L~sl-stshi~~~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-f 313 (709)
+..+++...+++ +...+..+..||.|||+||+||+|+.|.|.+.. .+...|+|.|||.||+.+++..++. |
T Consensus 15 I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~-------~~~~~I~V~DnG~Gi~~~~l~~~f~~~ 87 (365)
T 1h7s_A 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKD-------YGVDLIEVSDNGCGVEEENFEGLTLKH 87 (365)
T ss_dssp --------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEG-------GGTSEEEEEECSCCCCGGGSGGGGC--
T ss_pred hccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCCEEEEEEEe-------CCcEEEEEEECCCCcCHHHHHHHhhhc
Confidence 577888888888 445667999999999999999999999998862 2356899999999999999998764 5
Q ss_pred ccCCCC-CCCC---CccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEcCcccCCCCcEEEEE
Q 005212 314 GHKQPD-ADDP---NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELD 387 (709)
Q Consensus 314 G~s~k~-~~~~---~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VPi~~~~~~Gt~I~l~ 387 (709)
.++... ..+. ...|.+|+|+.+ ...++ +++|.||+.+.. .++.+. |. +...+..+.+.-..+||+|++.
T Consensus 88 ~tsK~~~~~dl~~i~s~G~rG~gl~s-i~~vs-~v~v~t~~~~~~-~~~~~~-~~-~~G~~~~~~~~~~~~GT~V~v~ 160 (365)
T 1h7s_A 88 HTSKIQEFADLTQVETFGFRGEALSS-LCALS-DVTISTCHASAK-VGTRLM-FD-HNGKIIQKTPYPRPRGTTVSVQ 160 (365)
T ss_dssp --------CCTTCSEEESSSSSHHHH-HHHHS-EEEEEEECTTCS-SCEEEE-EC-TTSCEEEEEECCCCSEEEEEEE
T ss_pred cccccccccchhcccccCCCCchhhh-hhhhc-cEEEEEccCCCc-ceEEEE-Ec-CCCceEeecccCCCCCcEEEEe
Confidence 444221 1122 457888999854 34477 999999998753 344443 32 1123332222234579999885
No 19
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=99.13 E-value=2.2e-11 Score=102.23 Aligned_cols=44 Identities=32% Similarity=0.551 Sum_probs=37.5
Q ss_pred CcCCCCCceeeCc--cccccccCCCCCCCCCCCCceeeC--------CCCchhh
Q 005212 638 ALYKPDQEWVQCN--KCRKWRMLDPGFDTKSLPVECLLR--------GCVIFLS 681 (709)
Q Consensus 638 ~~~~~~~~wvQCd--~C~KWR~Lp~~~~~~~lp~~W~c~--------~c~~~~~ 681 (709)
........||||| .|+|||+||.+++...||++|+|+ +|.+|++
T Consensus 10 ~~~~~~~~WVQCd~p~C~KWR~LP~~~~~~~lpd~W~C~mN~d~~~~~Cs~pEE 63 (69)
T 2e61_A 10 SGFGQCLVWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEE 63 (69)
T ss_dssp SSCCCCCCEEECSSTTTCCEEECCSSCCTTTSCTTCCGGGCSCGGGCSSSSCCC
T ss_pred CCCCCCCeEEEeCccccCcccCCccccccccCCCcCEeCCCCCCccCCCCCCcc
Confidence 3455678999999 999999999999998999999998 3666655
No 20
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=99.03 E-value=5.6e-11 Score=106.25 Aligned_cols=57 Identities=19% Similarity=0.394 Sum_probs=43.8
Q ss_pred CCcCCCCCceeeCccccccccCCCCCC-CCCCCCceeeC--------CCCchhhhhhHHHHHHhhcc
Q 005212 637 GALYKPDQEWVQCNKCRKWRMLDPGFD-TKSLPVECLLR--------GCVIFLSKRLMREWLQSLQS 694 (709)
Q Consensus 637 ~~~~~~~~~wvQCd~C~KWR~Lp~~~~-~~~lp~~W~c~--------~c~~~~~~~~~~~~~~~~~~ 694 (709)
+..+.+...|||||+|+|||+||.++. ...+|++|+|+ +|.+|++... ++-.+.|+.
T Consensus 19 ~~~~~~~~~WVQCD~C~KWRrLP~~~~~~~~~pd~W~C~mN~D~~~nsCs~PEE~~~-~ei~~~l~~ 84 (100)
T 2l7p_A 19 EDSYSTESAWVRCDDCFKWRRIPASVVGSIDESSRWICMNNSDKRFADCSKSQEMSN-EEINEELGI 84 (100)
T ss_dssp SSCCSSSSEEEECTTTCCEEEECHHHHTTSTTSSCCCGGGSSCSSSCSTTSCCSSCH-HHHHHHHTC
T ss_pred CCCCCCCCeEEeeCCCCccccCChhHccccCCCCCceeCCCCCCCCCCCCCccCCCH-HHHHHHhcc
Confidence 334667889999999999999998765 36799999998 6999999763 333444443
No 21
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.97 E-value=5.3e-09 Score=114.26 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=65.2
Q ss_pred CHHHHHHHHHhccccc---C-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHh--------hhhh-cccCCCCC
Q 005212 254 WIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV--------RMTY-FGHKQPDA 320 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA---~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~--------~~l~-fG~s~k~~ 320 (709)
-+..++.||||||+|| + |+.|.|.|.. ...|+|.|||.||+.++.. -+|. +..+.|-.
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~---------~g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~ 104 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---------DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 104 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEECT---------TSCEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSS
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEeC---------CCEEEEEECCCCcccCcccccCcchHHHhheeccccCCcC
Confidence 5788899999999999 5 9999998862 2389999999999998732 2333 22222211
Q ss_pred --CCCCccccccceeeeecccccCeEEEEEeeCC
Q 005212 321 --DDPNRIGRFGVGFKTGAMRLGKDALVLTQTAD 352 (709)
Q Consensus 321 --~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g 352 (709)
.-....|..|+|+.+ .-.++..++|.|+.++
T Consensus 105 ~~~~~vSgGl~GvGls~-vnalS~~l~v~~~r~g 137 (391)
T 1ei1_A 105 DNSYKVSGGLHGVGVSV-VNALSQKLELVIQREG 137 (391)
T ss_dssp SSSCSSCSCCSSCHHHH-HHHTEEEEEEEEEETT
T ss_pred CCcccccCCccccchHH-HHHhcCeEEEEEEeCC
Confidence 123467899999944 4558889999998765
No 22
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.82 E-value=6.6e-09 Score=103.81 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=84.5
Q ss_pred HHHHHHHHHhccccc---C-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHh--------hhhh-cccCCCCCC
Q 005212 255 IFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV--------RMTY-FGHKQPDAD 321 (709)
Q Consensus 255 ~f~AIaELIDNA~DA---~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~--------~~l~-fG~s~k~~~ 321 (709)
+..++.|||+||+|| + |+.|.|.+.. ...|+|.|||.||+.+++. .++. ...+.|-..
T Consensus 18 ~~~~v~Elv~NsiDa~~~g~a~~I~V~i~~---------~g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~ 88 (201)
T 3fv5_A 18 PNHLGQEVIDNSVDEALAGHAKRVDVILHA---------DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN 88 (201)
T ss_dssp THHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC--------
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEEEeC---------CCEEEEEECCCCcCcccccccCcchhheeeeeeccccCcCC
Confidence 477899999999999 5 9999998861 2389999999999998842 2222 222222111
Q ss_pred --CCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEEcC-ccc--CCCCcEEEEEeccchhhhh
Q 005212 322 --DPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI-VSY--YRKGQFMELDTVVQSEATA 396 (709)
Q Consensus 322 --~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~VPi-~~~--~~~Gt~I~l~~~~e~e~~~ 396 (709)
-....|..|.|+.+ .-.++..++|.|++++. .+.+.|..|...-.++. ..- ...||+|++.+....
T Consensus 89 ~~~~~s~GfrGeglss-inalS~~l~v~t~~~g~----~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~Pdr~~---- 159 (201)
T 3fv5_A 89 KNYQFSGGLHGVGISV-VNALSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETF---- 159 (201)
T ss_dssp -------------CHH-HHHTEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEECGGG----
T ss_pred CcccccCcccceecch-hhcccceEEEEEEecCc----eEEEEEeCCEEcccceecccCCCCCCCeEEEEEECHHH----
Confidence 13468999999954 44588899999998764 24556644421111221 122 457999988643211
Q ss_pred hhhhhhhhhcCCCcchhHHHhhccccCCCCCcEEEEEecc
Q 005212 397 KYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLD 436 (709)
Q Consensus 397 e~~L~~I~kySPF~s~~I~e~~~~~~~~~tGT~III~NLr 436 (709)
.+-..|...-|.+.+..++--..|..|.+.+-+
T Consensus 160 -------F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~r 192 (201)
T 3fv5_A 160 -------FDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI 192 (201)
T ss_dssp -------SSCCCCCHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred -------cCCCccCHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 111122222233333322222578888887765
No 23
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.75 E-value=1.3e-07 Score=102.57 Aligned_cols=89 Identities=8% Similarity=-0.004 Sum_probs=59.1
Q ss_pred cCHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcccc
Q 005212 253 GWIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (709)
Q Consensus 253 ~~~f~AIaELIDNA~DA----~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~ 328 (709)
.-+..++.||||||+|| +|+.|.|.|.. + ..|+|.|||.||+. |+.-.+.-|.+-.........+.
T Consensus 29 ~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~-------~--g~I~V~DnGrGIp~-e~v~~lhagsKf~~~~~~~~y~v 98 (369)
T 3cwv_A 29 YGLHHLVYFLLDVAYEEARRGECRDVVLEVGG-------D--GSIALFCTSRTVTA-ENLVRVATGAGFLGRPPGDGWGW 98 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT-------T--SCEEEEEEESSCCH-HHHHHHHTTTTGGGSSCCCSTTT
T ss_pred chHHHHHHHHHhhhHhHHhhCCCCEEEEEEeC-------C--CEEEEEECCCCcCH-hHeeeeecCCCcCCCcccccccc
Confidence 35788899999999998 79999999862 2 38999999999998 43223323332211000012222
Q ss_pred ccceeeeecccccCeEEEEEeeCCC
Q 005212 329 FGVGFKTGAMRLGKDALVLTQTADS 353 (709)
Q Consensus 329 fGiGfKsAsmrLg~~v~V~TK~~g~ 353 (709)
-| |. ++.-.++..++|.|++++.
T Consensus 99 sG-Gl-s~vnalSs~l~v~t~r~g~ 121 (369)
T 3cwv_A 99 DS-ML-VVSLALSSRYQVDIWADGR 121 (369)
T ss_dssp TS-SH-HHHHHTEEEEEEEEEETTE
T ss_pred cC-HH-HHHHHhhceEEEEEEECCC
Confidence 25 75 4444588899999998764
No 24
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.71 E-value=4.2e-07 Score=99.20 Aligned_cols=89 Identities=18% Similarity=0.162 Sum_probs=64.3
Q ss_pred CHHHHHHHHHhcccccC----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhh--------hhh-cccCCCC-
Q 005212 254 WIFGAIAELVDNSRDAK----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY-FGHKQPD- 319 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~-fG~s~k~- 319 (709)
-....|.|||+||+|+. ++.|.|.+.. ...|+|.|||.||+.+++.+ ++. +....+.
T Consensus 32 g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~---------~~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~~kf~ 102 (390)
T 1kij_A 32 GYHHLFKEILDNAVDEALAGYATEILVRLNE---------DGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFE 102 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGG
T ss_pred hHHHHHHHHHHHHHHHhhhCCCCEEEEEEEc---------CCEEEEEEcCCCCCHHHhhhccccchhhheeeeeeccccc
Confidence 35678999999999996 7888888752 14899999999999998765 443 2111111
Q ss_pred -CCCCCccccccceeeeecccccCeEEEEEeeCC
Q 005212 320 -ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTAD 352 (709)
Q Consensus 320 -~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g 352 (709)
.......|..|+|+.. ...++..+.|.|+..+
T Consensus 103 ~~~~~~s~G~~G~Gls~-v~als~~~~v~t~~~g 135 (390)
T 1kij_A 103 QGAYKVSGGLHGVGASV-VNALSEWTVVEVFREG 135 (390)
T ss_dssp GSSCCCCSCSSTTSHHH-HHHTEEEEEEEEEETT
T ss_pred CccccccCCCCCcceee-ecccccceEEEEecCC
Confidence 1112356889999954 5568899999999765
No 25
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.60 E-value=8.4e-08 Score=105.10 Aligned_cols=89 Identities=19% Similarity=0.260 Sum_probs=63.6
Q ss_pred CHHHHHHHHHhcccccC-----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhH--------hhhhh-c--ccCC
Q 005212 254 WIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY-F--GHKQ 317 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~-----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~-f--G~s~ 317 (709)
-+...+.||||||+|++ ++.|.|.|.. + ...|+|.|||.||+.++. .-+|. . |.+-
T Consensus 52 GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~-------~-~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf 123 (400)
T 1zxm_A 52 GLYKIFDEILVNAADNKQRDPKMSCIRVTIDP-------E-NNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNY 123 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET-------T-TTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCC
T ss_pred hHHHHHHHHHhhHHhHHhhcCCCceEEEEEEC-------C-CCEEEEEECCCcccCccccccCccchhheeeeecccCCC
Confidence 35677999999999997 7899998872 1 269999999999998762 22333 1 2221
Q ss_pred CCCCCCCccccccceeeeecccccCeEEEEEeeC
Q 005212 318 PDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA 351 (709)
Q Consensus 318 k~~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~ 351 (709)
....-....|..|+|.+ +.-.|+..++|.|+..
T Consensus 124 ~~~~ykvSgGlhGvGls-vVnAlS~~l~v~v~~~ 156 (400)
T 1zxm_A 124 DDDEKKVTGGRNGYGAK-LCNIFSTKFTVETASR 156 (400)
T ss_dssp CGGGCCCCSCCSSCHHH-HHHHTEEEEEEEEEET
T ss_pred CCCcccccCCcccccee-eeEEeccceEEEEecC
Confidence 11111347799999994 4556889999999874
No 26
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.54 E-value=1.2e-07 Score=96.09 Aligned_cols=159 Identities=18% Similarity=0.221 Sum_probs=91.3
Q ss_pred CHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHh--------hhhh-c--ccCCC
Q 005212 254 WIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV--------RMTY-F--GHKQP 318 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA----~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~--------~~l~-f--G~s~k 318 (709)
-+..++.|||+||+|+ .++.|.|.|.. ...|+|.|||.||+.+... -+|. . |.+-.
T Consensus 35 gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~---------~g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kfd 105 (220)
T 4duh_A 35 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---------DNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD 105 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCEEEEEECT---------TSCEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCCC
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEEeC---------CCcEEEEECCcCcccccccccCcchhhheeeecccCCCcC
Confidence 4778899999999999 89999998862 2479999999999988632 2232 2 22211
Q ss_pred CCCCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCC--ccEEEcCcccCCCCcEEEEEeccchhhhh
Q 005212 319 DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK--DNLEIPIVSYYRKGQFMELDTVVQSEATA 396 (709)
Q Consensus 319 ~~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~--~~i~VPi~~~~~~Gt~I~l~~~~e~e~~~ 396 (709)
...-...-|..|+|.+ +.-.|+..++|.+++++. .+.+.|..|. ..+.+ +..-...||+|+..+..+- +.
T Consensus 106 ~~~yk~SgGlhGvG~s-vvNAlS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~~-~g~~~~~GT~V~F~Pd~~~-F~- 177 (220)
T 4duh_A 106 DNSYKVSGGLHGVGVS-VVNALSQKLELVIQREGK----IHRQIYEHGVPQAPLAV-TGETEKTGTMVRFWPSLET-FT- 177 (220)
T ss_dssp TTC--------CCCHH-HHHHTEEEEEEEEEETTE----EEEEEEETTEESSSCEE-EEECSCCEEEEEEEECTTT-CC-
T ss_pred CCccccccCccceecc-hhcccccceEEEEEECCE----EEEEEecCCcCcCCcee-ccccCCCCcEEEEEECHHH-hC-
Confidence 1112357799999994 455688999999998774 2456664432 11111 1122467999987654321 10
Q ss_pred hhhhhhhhhcCCCcchhHHHhhccccCCCCCcEEEEEeccC
Q 005212 397 KYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 437 (709)
Q Consensus 397 e~~L~~I~kySPF~s~~I~e~~~~~~~~~tGT~III~NLrr 437 (709)
+..-|....|.+.+..++--..|.+|.+.+-+.
T Consensus 178 --------~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~ 210 (220)
T 4duh_A 178 --------NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRD 210 (220)
T ss_dssp --------SSCSCCHHHHHHHHHHHHHHCTTSEEEEEETTT
T ss_pred --------CcccCCHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 000122222333333222225789998887653
No 27
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.53 E-value=1.9e-07 Score=101.95 Aligned_cols=287 Identities=14% Similarity=0.060 Sum_probs=156.0
Q ss_pred HHHHHHHHhccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHh--------Hhhhhh-cccCCCC--C
Q 005212 256 FGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD--------VVRMTY-FGHKQPD--A 320 (709)
Q Consensus 256 f~AIaELIDNA~DA----~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee--------L~~~l~-fG~s~k~--~ 320 (709)
-.++.|||+||+|+ .|+.|.|.|.. + ..|+|.|||.||+.++ +..+|. +..+.|- .
T Consensus 33 ~~lv~ElvdNsiD~a~~g~a~~I~V~i~~-------~--g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf~~~ 103 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGHAKRVDVILHA-------D--QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK 103 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECT-------T--SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEec-------C--CEEEEEECCCCcCcccccccCcchhhheeeeecccCCcCCC
Confidence 56799999999999 49999998862 1 3899999999999887 444443 2222221 1
Q ss_pred CCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCccEEE-cCcccC--CCCcEEEEEeccchhhhhh
Q 005212 321 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEI-PIVSYY--RKGQFMELDTVVQSEATAK 397 (709)
Q Consensus 321 ~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~~i~V-Pi~~~~--~~Gt~I~l~~~~e~e~~~e 397 (709)
.-....|..|+|+. +.-.|+..++|.|+.++. .+.+.|..|...-.+ ++.... ..||.|++.+..+-.
T Consensus 104 ~~~~sgGl~GvGls-~vnalS~~l~v~~~r~g~----~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~Pd~~~F---- 174 (390)
T 1s16_A 104 NYQFSGGLHGVGIS-VVNALSKRVEVNVRRDGQ----VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF---- 174 (390)
T ss_dssp SCSSCSCCSSCHHH-HHHHTEEEEEEEEEETTE----EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEEECGGGS----
T ss_pred cccccCCccccchH-HHHHhhcccEEEEEECCc----EEEEEEeCCcccccceecccccCCCCceEEEEEECcccc----
Confidence 12346789999994 445588899999997652 344566444211111 122333 579999876432211
Q ss_pred hhhhhhhhcCCCcchhHHHhhccccCCCCCcEEEEEeccCCCCceeeeccCCCCCCCCCCccceeeecccccCCCCcccc
Q 005212 398 YNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQ 477 (709)
Q Consensus 398 ~~L~~I~kySPF~s~~I~e~~~~~~~~~tGT~III~NLrr~~~~~eLdF~~d~~~~~~~~~~DI~i~~~~~~~~~~q~~~ 477 (709)
+-..|....|.+.+..+.--..|..|.+.+-+.. .+-.|.
T Consensus 175 -------~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~---~~~~f~------------------------------ 214 (390)
T 1s16_A 175 -------DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN---TEQRWC------------------------------ 214 (390)
T ss_dssp -------SCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTT---EEEEEC------------------------------
T ss_pred -------CcccccHHHHHHHHHHHHhcCCCcEEEEEeCCCc---eeEEEE------------------------------
Confidence 0011222223333333322246888877755420 001111
Q ss_pred cCcchhhHHHHHHhhhcCCCeEEEEcCeeecccccccccCceeeecccccceEEEEEEceeccccceecceEEEEEcCee
Q 005212 478 KVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRL 557 (709)
Q Consensus 478 ~~p~~ySLRaYlsiLYL~Prm~I~LnG~kV~~~~I~~~L~~~~v~k~~i~~~~V~It~Gf~~~e~~~~~~Gi~vY~nnRL 557 (709)
..-.|++|+..|+=... .+....+ .+..+..+..+++.+.+... .....++.|.|||-
T Consensus 215 ---~~gGl~~~v~~l~~~~~--------~~~~~~i--------~~~~~~~~~~ve~a~~~~~~---~~~~~~~sFvN~i~ 272 (390)
T 1s16_A 215 ---YQDGLNDYLAEAVNGLP--------TLPEKPF--------IGNFAGDTEAVDWALLWLPE---GGELLTESYVNLIP 272 (390)
T ss_dssp ---CSSCHHHHHHHHHTTSC--------CEEEEEE--------EEEEECSSEEEEEEEEECTT---CCCCCEEEEETTEE
T ss_pred ---cCCcHHHHHHHHhCCCc--------ccCCCcE--------EEEEeeCCEEEEEEEEeccC---CCCceEEEEECCEe
Confidence 11157888887552211 0100111 01111112345555554211 12345889999998
Q ss_pred eeeE-Eee------------------c-----cccccCCCCceEEEEEecCCccccCCCceeeccCCCCCCCchhHHHHH
Q 005212 558 IEAY-KRV------------------G-----GMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLE 613 (709)
Q Consensus 558 Ik~y-eKV------------------g-----~q~~~~~~grGVIGVVe~~~l~~p~~~~~~pthnKQdFe~t~~Y~~L~ 613 (709)
+.-+ -.+ + ..+.+..--.|+..||.+- +++| .|+ ..+|.-.-.........
T Consensus 273 t~~GGTH~~gfr~alt~~i~~~~~~~~~~k~~~~l~~~dvregl~avisvk--i~~P--~Fe-gQTK~kL~~~e~~~~v~ 347 (390)
T 1s16_A 273 TMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVK--MQDP--QFA-GQTKERLSSRQCAAFVS 347 (390)
T ss_dssp CTTCBHHHHHHHHHHHHHHHHHHHHTTCSCTTCCCCHHHHHTTEEEEEEEE--ESSC--CBS-STTCCCBCCTHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhCcCccCCccCHHHHhhccEEEEEee--cCCC--Ccc-ccccchhcChhHHHHHH
Confidence 8632 111 0 0011111123778888763 2333 344 46666666666777788
Q ss_pred HHHHHHHHHHHhhc
Q 005212 614 EWLGKVADEYWDNK 627 (709)
Q Consensus 614 ~~L~e~l~eYW~~~ 627 (709)
..+.+.|..|..++
T Consensus 348 ~~v~~~l~~~l~~n 361 (390)
T 1s16_A 348 GVVKDAFILWLNQN 361 (390)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHC
Confidence 88899998888653
No 28
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.50 E-value=2.4e-07 Score=94.20 Aligned_cols=158 Identities=17% Similarity=0.124 Sum_probs=92.6
Q ss_pred CHHHHHHHHHhccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHh-------Hhhhhh-cccCCCCC-
Q 005212 254 WIFGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD-------VVRMTY-FGHKQPDA- 320 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA----~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee-------L~~~l~-fG~s~k~~- 320 (709)
-+...+.|+|+||+|+ .++.|.|.|.. ...++|.|||.||+.+. +.-+|. +-.+.|-.
T Consensus 40 gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~---------~g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~ 110 (226)
T 4emv_A 40 GLHHLVWEIVDNAVDEALSGFGDRIDVTINK---------DGSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQ 110 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEEEECT---------TSCEEEEECSSCCCCSBCGGGCBHHHHHHHCBC-------
T ss_pred cHHHHHHHHHHHHHHHHhcCCCcEEEEEEeC---------CCeEEEEEcCCCccccccccCceehheeEEeecccCccCc
Confidence 3667899999999999 78999888762 24799999999999987 433343 22222211
Q ss_pred -CCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCC-C--ccEEEcCccc--CCCCcEEEEEeccchhh
Q 005212 321 -DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQG-K--DNLEIPIVSY--YRKGQFMELDTVVQSEA 394 (709)
Q Consensus 321 -~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg-~--~~i~VPi~~~--~~~Gt~I~l~~~~e~e~ 394 (709)
.-...-|..|+|.+ +.-.|+..++|.+++++. .+.+.|..| . ..+.+ +... ...||+|+..+..+-.
T Consensus 111 ~~yk~SgGlhGvG~s-vvNALS~~l~v~v~r~g~----~~~q~f~~Gg~~~~~l~~-ig~~~~~~~GT~V~F~PD~~iF- 183 (226)
T 4emv_A 111 GGYKTSGGLHGVGSS-VVNALSSWLEVEITRDGA----VYKQRFENGGKPVTTLKK-IGTALKSKTGTKVTFMPDATIF- 183 (226)
T ss_dssp -------CGGGCCHH-HHHHTEEEEEEEEEETTE----EEEEEEETTTEESSCSEE-EEECCTTCCEEEEEEEECTTTC-
T ss_pred cceEeccccccccch-hhhhcccceEEEEEeCCc----EEEEEECCCCEEcCCceE-ecccCCCCCCeEEEEEECHHHc-
Confidence 12467799999994 455689999999998774 245666444 2 11111 1112 4579998876543211
Q ss_pred hhhhhhhhhhhcCCCcchhHHHhhccccCCCCCcEEEEEeccC
Q 005212 395 TAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 437 (709)
Q Consensus 395 ~~e~~L~~I~kySPF~s~~I~e~~~~~~~~~tGT~III~NLrr 437 (709)
+-.-|....|...+..++--..|.+|.+.+-+.
T Consensus 184 ----------~~~~~~~~~l~~rlrelA~ln~gv~i~l~der~ 216 (226)
T 4emv_A 184 ----------STTDFKYNTISERLNESAFLLKNVTLSLTDKRT 216 (226)
T ss_dssp ----------SCCCCCHHHHHHHHHHHHHHHCSCEEEEEETTT
T ss_pred ----------CCCCcCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence 011122222333333222124788998887653
No 29
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.30 E-value=1.4e-06 Score=97.28 Aligned_cols=96 Identities=22% Similarity=0.354 Sum_probs=67.5
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh-cccCCCCCCCCCccc
Q 005212 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A~-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~s~k~~~~~~~IG 327 (709)
.+..+|.|||+||+||.+. .|.|.+... ....+...|+|.|||.||+.+++..++. |..+.+. ......|
T Consensus 32 ~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~---~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 107 (471)
T 1mu5_A 32 ALYQTVRELIENSLDATDVHGILPNIKITIDLI---DDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 107 (471)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEE---ETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEC---CCcCcEEEEEEEECCCCCCHHHHHHHhccccccccc-ccccCCC
Confidence 4678999999999999876 677777631 0012456799999999999999998875 4333332 1234567
Q ss_pred cccceeeeecc---cccCe-EEEEEeeCCC
Q 005212 328 RFGVGFKTGAM---RLGKD-ALVLTQTADS 353 (709)
Q Consensus 328 ~fGiGfKsAsm---rLg~~-v~V~TK~~g~ 353 (709)
..|+|+..+.. ..|.+ +.|.|+..+.
T Consensus 108 g~GLGL~iv~~l~~~~gG~~i~v~S~~~~g 137 (471)
T 1mu5_A 108 MYGLGVKAAVLYSQMHQDKPIEIETSPVNS 137 (471)
T ss_dssp SCTTTHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred CceeeHHHHHHHHHHhCCCceeEEEecCCC
Confidence 89999965322 24445 9999987654
No 30
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.25 E-value=1.5e-06 Score=98.48 Aligned_cols=96 Identities=22% Similarity=0.354 Sum_probs=68.5
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh-cccCCCCCCCCCccc
Q 005212 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A~-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~s~k~~~~~~~IG 327 (709)
.+..+|.|||+||+||.+. .|.|.+... ....+...|+|.|||.||+.+++..++. |..+.+. ......|
T Consensus 31 ~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~---~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~-~~~~~~g 106 (530)
T 2zbk_B 31 ALYQTVRELIENSLDATDVHGILPNIKITIDLI---DDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY-VNRQTRG 106 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEE---ETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC-CCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEEEEEC---CCcCceEEEEEEECCCCCCHHHHHHHhccccccCCc-ccccCCC
Confidence 4678899999999999887 788887641 0012456899999999999999998875 4333332 1235668
Q ss_pred cccceeeeecc---cccCe-EEEEEeeCCC
Q 005212 328 RFGVGFKTGAM---RLGKD-ALVLTQTADS 353 (709)
Q Consensus 328 ~fGiGfKsAsm---rLg~~-v~V~TK~~g~ 353 (709)
..|+|+..+.. ..|.+ +.|.|+..+.
T Consensus 107 g~GLGLsiv~~l~~~~gG~~I~V~S~~~~g 136 (530)
T 2zbk_B 107 MYGLGVKAAVLYSQMHQDKPIEIETSPVNS 136 (530)
T ss_dssp SSSSHHHHHHHHHHHHCCCCEEEEEECTTC
T ss_pred CccchHHHHHHHHHHhCCCceEEEEecCCC
Confidence 89999964322 24455 9999987654
No 31
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.22 E-value=1.1e-06 Score=96.36 Aligned_cols=119 Identities=20% Similarity=0.218 Sum_probs=69.5
Q ss_pred HHHHHHHHhccccc----CCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHh--------hhhh---cccCCCCC
Q 005212 256 FGAIAELVDNSRDA----KATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVV--------RMTY---FGHKQPDA 320 (709)
Q Consensus 256 f~AIaELIDNA~DA----~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~--------~~l~---fG~s~k~~ 320 (709)
-..+.|+||||+|+ .++.|.|.|.. ...|+|.|||.||+.+... -+|+ -|.+-...
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~I~V~i~~---------dgsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~ 122 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQIEVTLYK---------DGSCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNR 122 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECT---------TSCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC---------
T ss_pred chhhHHHHHHHHHHhhcCCCceEEEEEeC---------CCeEEEEEcCCCCCcccccccCCcchheEEEecccCCCcCCC
Confidence 56799999999999 78999998862 2489999999999987632 2232 12221111
Q ss_pred CCCCccccccceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCC--ccEEEcCccc--CCCCcEEEEEec
Q 005212 321 DDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGK--DNLEIPIVSY--YRKGQFMELDTV 389 (709)
Q Consensus 321 ~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~--~~i~VPi~~~--~~~Gt~I~l~~~ 389 (709)
.-...-|..|+|. ++.-.|+..++|.++++|. .+.+.|..|. ..+.+ +... ...||+|+..+.
T Consensus 123 ~ykvSgGlhGvG~-svVNALS~~l~v~v~rdGk----~~~q~f~~G~~~~~l~~-ig~~~~~~~GT~V~F~PD 189 (408)
T 3lnu_A 123 NYTFSGGLHGVGV-SVVNALSTKVELFIKREGS----EHRMEFRDGNAASKLEV-VGTVGKKNTGTRLRFWAD 189 (408)
T ss_dssp -----------CH-HHHHHTEEEEEEEEEETTE----EEEEEEETTEECSCCEE-EEECCTTCCEEEEEEEEC
T ss_pred ceeecCCcccccc-ceehhccCeEEEEEEECCE----EEEEEECCCEECCCceE-eccCcCCCCCcEEEEEEC
Confidence 1235678999999 4455689999999998774 3456664432 11111 1112 357999887654
No 32
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.04 E-value=3.6e-06 Score=96.85 Aligned_cols=95 Identities=19% Similarity=0.290 Sum_probs=63.5
Q ss_pred CHHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhh-cccCCCCCCCCCccc
Q 005212 254 WIFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTY-FGHKQPDADDPNRIG 327 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A~-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~-fG~s~k~~~~~~~IG 327 (709)
.+..+|.|||+||+||.++ .|.|.+... +.+...|+|.|||.||+.+++.+++. |..+.+........|
T Consensus 37 ~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~-----~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~G 111 (621)
T 2q2e_B 37 SLITTVKEAVDNALDACEEAGILPDILVQVERT-----GPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRG 111 (621)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEE-----TTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCS
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEC-----CCcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCC
Confidence 4678899999999999875 677766531 11345799999999999999998875 322222111224458
Q ss_pred cccceeeeecc---cccCe-EEEEEeeCCC
Q 005212 328 RFGVGFKTGAM---RLGKD-ALVLTQTADS 353 (709)
Q Consensus 328 ~fGiGfKsAsm---rLg~~-v~V~TK~~g~ 353 (709)
..|+|+..+.. .++.. +.|.|+..+.
T Consensus 112 g~GlGLsiv~~ls~~~gG~~I~V~S~~~gg 141 (621)
T 2q2e_B 112 QQGIGISAAVLYAQMTAGRHTKILSKTSPT 141 (621)
T ss_dssp SSSHHHHHHHHHHHHHTCCCCEEEEECSSS
T ss_pred CceechhhhhHHHHHhCCCceeEEeeccCC
Confidence 89999964322 23333 7899987653
No 33
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.88 E-value=2.4e-05 Score=86.14 Aligned_cols=123 Identities=16% Similarity=0.212 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcccccC-----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhh--------hhh---cccCCC
Q 005212 255 IFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVR--------MTY---FGHKQP 318 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~-----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~--------~l~---fG~s~k 318 (709)
+...+.|+||||+|+. ++.|.|.|.. +...|+|.|||.||+.+.... +|+ -|.+-.
T Consensus 65 L~~lv~EivdNaiDe~~~~g~~~~I~V~i~~--------d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd 136 (418)
T 1pvg_A 65 LFKIFDEILVNAADNKVRDPSMKRIDVNIHA--------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYD 136 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCC
T ss_pred HHHHHHHHHhCHHHHHHhcCCCCEEEEEEEC--------CCCEEEEEECCCcccCcccccCCcccceEEEEEEecccccC
Confidence 4456999999999985 6899998873 125899999999998765332 222 222211
Q ss_pred CCCCCCccccccceeeeecccccCeEEEEEee--CCCCceeEEEeeccCCCccEEEc-Cccc--CCCCcEEEEEecc
Q 005212 319 DADDPNRIGRFGVGFKTGAMRLGKDALVLTQT--ADSRSIAFLSQSLNQGKDNLEIP-IVSY--YRKGQFMELDTVV 390 (709)
Q Consensus 319 ~~~~~~~IG~fGiGfKsAsmrLg~~v~V~TK~--~g~~svg~ls~tf~eg~~~i~VP-i~~~--~~~Gt~I~l~~~~ 390 (709)
...-...-|..|+|. ++.-.|+..+.|.++. +|. .+.++|..|.....-| +... ...||+|+..++.
T Consensus 137 ~~~ykvSGGLhGVG~-SvVNALS~~l~V~v~r~rdGk----~y~q~f~~G~~~~~~p~i~~~~~~~tGT~V~F~PD~ 208 (418)
T 1pvg_A 137 DDEKKVTGGRNGYGA-KLCNIFSTEFILETADLNVGQ----KYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDL 208 (418)
T ss_dssp TTSCCCCSCCSSCHH-HHHHHTEEEEEEEEEETTTTE----EEEEEEETTTTEECCCEEEECCSSCCEEEEEEEECG
T ss_pred CCceeccCCccceee-eeeeeccceEEEEEEECCCCc----EEEEEEEcCCCccCCCeecccCCCCCceEEEEEECh
Confidence 111234668999998 5566799999999985 342 3456674431111111 1111 3479998876643
No 34
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.87 E-value=2.6e-05 Score=77.69 Aligned_cols=146 Identities=18% Similarity=0.220 Sum_probs=84.0
Q ss_pred CHHHHHHHHHhccccc---C-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccc
Q 005212 254 WIFGAIAELVDNSRDA---K-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 329 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA---~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~f 329 (709)
-+...+.|||+||+|+ + ++.|.|.+.. ...++|.|||.||+.+.-. .+ +. .....+ |
T Consensus 31 gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~---------~g~i~V~DnG~Gip~~~h~------~~-~~-~~~e~i--~ 91 (198)
T 3ttz_A 31 GLHHLVWEIVDNSIDEALAGYANQIEVVIEK---------DNWIKVTDNGRGIPVDIQE------KM-GR-PAVEVI--L 91 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEG---------GGEEEEEECSSCCCCSBCT------TT-SS-BHHHHH--H
T ss_pred chHHHHHHHHHHHHhHHhcCCCcEEEEEEeC---------CCeEEEEECCCCccccccC------cC-CC-cccccc--c
Confidence 3677899999999994 7 8999999872 2389999999999986211 00 00 000111 2
Q ss_pred cceeeeecccccCeEEEEEeeCCCCceeEEEeeccCCCc--cE-EEcCcccCCCCcEEEEEeccchhhhhhhhhhhhhhc
Q 005212 330 GVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD--NL-EIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEF 406 (709)
Q Consensus 330 GiGfKsAsmrLg~~v~V~TK~~g~~svg~ls~tf~eg~~--~i-~VPi~~~~~~Gt~I~l~~~~e~e~~~e~~L~~I~ky 406 (709)
+ . ++.-.|+..++|.|+++|. .+.+.|..|.- .. .++ .-...||+|+..+..+- + ++-
T Consensus 92 t--~-SvVNALS~~l~v~v~r~g~----~~~~~f~~G~~~~~l~~i~--~~~~~GT~V~F~Pd~~i-F---------~~~ 152 (198)
T 3ttz_A 92 T--S-SVVNALSQDLEVYVHRNET----IYHQAYKKGVPQFDLKEVG--TTDKTGTVIRFKADGEI-F---------TET 152 (198)
T ss_dssp H--T-CHHHHTEEEEEEEEEETTE----EEEEEEETTEESSCCEEEE--ECSCCEEEEEEEECTTT-C---------CSC
T ss_pred e--e-EehhhhcCeEEEEEEECCc----EEEEEEeCCEECCCceecc--CCCCCCcEEEEEECHHH-h---------ccC
Confidence 2 1 2333577899999998874 24556644321 11 122 23467999987653321 1 011
Q ss_pred CCCcchhHHHhhccccCCCCCcEEEEEeccC
Q 005212 407 SPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 437 (709)
Q Consensus 407 SPF~s~~I~e~~~~~~~~~tGT~III~NLrr 437 (709)
.-|....|.+.+..++--..|.+|.+.+-+.
T Consensus 153 ~~~~~~~l~~rlrelA~ln~gv~i~l~der~ 183 (198)
T 3ttz_A 153 TVYNYETLQQRIRELAFLNKGIQITLRDERD 183 (198)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTCEEEEEECSS
T ss_pred CccCHHHHHHHHHHHhhcCCCCEEEEEeecC
Confidence 1222222333333222225799999987753
No 35
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.79 E-value=4.3e-05 Score=69.74 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccceee
Q 005212 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGfK 334 (709)
+..++.+||+||+.+....|.|.+.. ..+.-.|.|.|||.||+.+++.+++....+.+.. .+..|+|+.
T Consensus 45 l~~il~nLl~NAi~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~-----~~g~GlGL~ 113 (152)
T 1id0_A 45 FVEVMGNVLDNACKYCLEFVEISARQ------TDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTL-----RPGQGVGLA 113 (152)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEEEE------CSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCC-----CTTCCSCHH
T ss_pred HHHHHHHHHHHHHHhCcCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHHHhccceeccCC-----CCCcccCHH
Confidence 55679999999999987777776653 3445689999999999999998887644433221 134688875
Q ss_pred eec---ccccCeEEEEEee
Q 005212 335 TGA---MRLGKDALVLTQT 350 (709)
Q Consensus 335 sAs---mrLg~~v~V~TK~ 350 (709)
.+- -.+|.++.+.+..
T Consensus 114 i~~~~~~~~gG~i~~~~~~ 132 (152)
T 1id0_A 114 VAREITEQYEGKIVAGESM 132 (152)
T ss_dssp HHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHcCCEEEEEeCC
Confidence 322 2467777777654
No 36
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.66 E-value=8.3e-05 Score=68.88 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccceee
Q 005212 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGfK 334 (709)
+..+|.+||+||+.+....|.|.+.. ..+.-.|.|.|||.||+.+++.+++...++.+.. ...+..|+|+.
T Consensus 48 l~~il~nll~NAik~~~~~I~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~---~~~~g~GlGL~ 118 (161)
T 1bxd_A 48 IKRAVANMVVNAARYGNGWIKVSSGT------EPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA---RTISGTGLGLA 118 (161)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEEEEE------ETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC---CCCCCCSCCCC
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEE------cCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC---CCCCCcccCHH
Confidence 55679999999999987788887763 2345679999999999999998887644433221 11245788885
Q ss_pred eec---ccccCeEEEEEee
Q 005212 335 TGA---MRLGKDALVLTQT 350 (709)
Q Consensus 335 sAs---mrLg~~v~V~TK~ 350 (709)
.+- -.+|.++.+.+..
T Consensus 119 i~~~~~~~~gG~i~~~~~~ 137 (161)
T 1bxd_A 119 IVQRIVDNHNGMLELGTSE 137 (161)
T ss_dssp TTHHHHHHHTSEEEEEEET
T ss_pred HHHHHHHHcCCEEEEEECC
Confidence 432 1467777777754
No 37
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.47 E-value=0.00013 Score=72.67 Aligned_cols=90 Identities=12% Similarity=0.141 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcccccCCC-----ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccc
Q 005212 255 IFGAIAELVDNSRDAKAT-----KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRF 329 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~-----~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~f 329 (709)
+..+|..||+||+++... .|.|.+.. ..+.-.|.|.|||.||+++++.+++...++.+.. .....+-.
T Consensus 139 l~~il~NLl~NAik~~~~~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-~~~~~~G~ 211 (258)
T 2c2a_A 139 IRQVLLNLLNNGVKYSKKDAPDKYVKVILDE------KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSS-LTYEVPGT 211 (258)
T ss_dssp HHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE------ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC----------C
T ss_pred HHHHHHHHHHHHHhcCcCCCCceeEEEEEec------CCCeEEEEEEecCCCCCHHHHHhhccccccCCCC-CCCCCCCc
Confidence 556789999999998642 25555542 2345679999999999999999887643332211 11122346
Q ss_pred cceeeeec---ccccCeEEEEEeeC
Q 005212 330 GVGFKTGA---MRLGKDALVLTQTA 351 (709)
Q Consensus 330 GiGfKsAs---mrLg~~v~V~TK~~ 351 (709)
|+|+..+- -..|.++.|.|...
T Consensus 212 GLGL~i~~~iv~~~gG~i~v~s~~~ 236 (258)
T 2c2a_A 212 GLGLAITKEIVELHGGRIWVESEVG 236 (258)
T ss_dssp CCTHHHHHHHHHHTTCEEEEEEETT
T ss_pred chHHHHHHHHHHHcCCEEEEEecCC
Confidence 88875321 24678888877643
No 38
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.38 E-value=0.00026 Score=64.58 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcccccCCC-ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcccccccee
Q 005212 255 IFGAIAELVDNSRDAKAT-KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~-~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGf 333 (709)
+..+|.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+.+++.+++...++... ...+..|+|+
T Consensus 47 l~~il~nLl~NA~~~~~~~~I~i~~~~------~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~----~~~~g~GlGL 116 (150)
T 1ysr_A 47 LRLAVDNAIANAVKHGGATLVQLSAVS------SRAGVEIAIDDNGSGVPEGERQVVFERFSRGST----ASHSGSGLGL 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEEEE------ETTEEEEEEEESSSCCCGGGHHHHHTSCC---------------CCC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEe------cCCEEEEEEEECCCCCCHHHHHHHhcccccCCC----CCCCCCCcCH
Confidence 456799999999998654 45555542 234567999999999999999988763332111 1123468887
Q ss_pred eeec---ccccCeEEEEEee
Q 005212 334 KTGA---MRLGKDALVLTQT 350 (709)
Q Consensus 334 KsAs---mrLg~~v~V~TK~ 350 (709)
..+- -.+|.++.+.+..
T Consensus 117 ~i~~~~~~~~gG~i~~~~~~ 136 (150)
T 1ysr_A 117 ALVAQQAQLHGGTASLENSP 136 (150)
T ss_dssp HHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHcCCEEEEeecC
Confidence 5321 2467777777654
No 39
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.38 E-value=0.00016 Score=78.15 Aligned_cols=90 Identities=14% Similarity=0.268 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcccccCCC---------ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCC----
Q 005212 255 IFGAIAELVDNSRDAKAT---------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 321 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~---------~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~---- 321 (709)
+..+|.+||+||+.+... .|.|.+.. ..+.-.|.|.|||.||+++++.+++...++.+...
T Consensus 244 L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~ 317 (407)
T 2q8g_A 244 LYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTL------GNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVET 317 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccc
Confidence 456699999999998532 57877763 34456799999999999999999987555433210
Q ss_pred -CCCccccccceeeeec---ccccCeEEEEEee
Q 005212 322 -DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (709)
Q Consensus 322 -~~~~IG~fGiGfKsAs---mrLg~~v~V~TK~ 350 (709)
.....+-+|+|+..+- -..|.++.|.|..
T Consensus 318 ~~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~ 350 (407)
T 2q8g_A 318 SRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLE 350 (407)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcC
Confidence 1234466889985321 2467778887754
No 40
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.37 E-value=6e-05 Score=71.87 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcccccC--------------CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhH-------------
Q 005212 255 IFGAIAELVDNSRDAK--------------ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV------------- 307 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~--------------A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL------------- 307 (709)
+..+|.+||+||+.+. ...|.|.+.. ..+.-.|.|.|||.||+.+++
T Consensus 48 l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~------~~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~ 121 (189)
T 1i58_A 48 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDES 121 (189)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEE------ETTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEe------cCCEEEEEEEeCCCCcCHHHHhhhhhhccchhhh
Confidence 4556999999999985 3456666653 234578999999999999987
Q ss_pred -----------hhhhhcccCCCCCCCCCccccccceeeeec---ccccCeEEEEEee
Q 005212 308 -----------VRMTYFGHKQPDADDPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (709)
Q Consensus 308 -----------~~~l~fG~s~k~~~~~~~IG~fGiGfKsAs---mrLg~~v~V~TK~ 350 (709)
.+++..+++.+. .....+..|+|+..+- -.+|..+.+.+..
T Consensus 122 ~~~~~~~~~~~~~if~~~~~~~~--~~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~ 176 (189)
T 1i58_A 122 KAATLSDQEILNFLFVPGFSTKE--KVSEVSGRGVGMDVVKNVVESLNGSISIESEK 176 (189)
T ss_dssp HHTTCCHHHHHGGGGSTTCSHHH--HHHGGGTCCCHHHHHHHHHHHTTCEEEEEEET
T ss_pred hhcccchhhhHHHhcCCcccccc--cCCCCCCCccCHHHHHHHHHHcCCEEEEEeCC
Confidence 334433332221 0112234688885432 2467777777754
No 41
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.37 E-value=0.00026 Score=70.53 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccce
Q 005212 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~--~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiG 332 (709)
+..+|.+||+||+++... .|.|.+.. ..+.-.|.|.|||.||+.+++.+++....+.+. +..|+|
T Consensus 156 l~~il~nLl~NA~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-------~g~GlG 222 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPPGGRVTLSARR------ALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR-------GGPGLG 222 (268)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEEEEE------CSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS-------CCCTTH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEe------cCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC-------CCCccc
Confidence 567799999999999754 56666553 345678999999999999999888764443221 245888
Q ss_pred eeeec---ccccCeEEEEEee
Q 005212 333 FKTGA---MRLGKDALVLTQT 350 (709)
Q Consensus 333 fKsAs---mrLg~~v~V~TK~ 350 (709)
+..+- -.+|..+.+.+..
T Consensus 223 L~i~~~~~~~~gG~i~i~s~~ 243 (268)
T 4ew8_A 223 LALVKALVELHGGWVALESEP 243 (268)
T ss_dssp HHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 75332 2467777777754
No 42
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.26 E-value=0.00024 Score=64.39 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccce
Q 005212 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiG 332 (709)
+..++.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+.+++.+++....+.+. +..|+|
T Consensus 48 l~~il~nll~NAi~~~~~~~~I~i~~~~------~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~-------~g~GlG 114 (152)
T 3a0y_A 48 IKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT-------QGTGLG 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEEE------CSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC---------CCCCS
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEEEe------cCCEEEEEEEeCCCCcCHHHHHhHhhhhccCCC-------CCCCcC
Confidence 55679999999999863 466666653 334567999999999999999888764443221 246888
Q ss_pred eeeec--c--cccCeEEEEEe
Q 005212 333 FKTGA--M--RLGKDALVLTQ 349 (709)
Q Consensus 333 fKsAs--m--rLg~~v~V~TK 349 (709)
+..+- + ..|..+.+.+.
T Consensus 115 L~i~~~~~~~~~gg~~~~~~~ 135 (152)
T 3a0y_A 115 LSICRKIIEDEHGGKIWTENR 135 (152)
T ss_dssp HHHHHHHHHTTTSCEEEEEEE
T ss_pred HHHHHHHHHHhCCcEEEEecC
Confidence 86431 2 46777777665
No 43
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.24 E-value=0.00023 Score=76.72 Aligned_cols=90 Identities=19% Similarity=0.277 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCC-----
Q 005212 255 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA----- 320 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A---------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~----- 320 (709)
+..+|.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+..
T Consensus 231 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~ 304 (394)
T 2e0a_A 231 LHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVL------GKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDN 304 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEE------CSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC----
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEe------CCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCc
Confidence 45669999999999853 257887763 3445689999999999999999998755443321
Q ss_pred CCCCccccccceeeeec---ccccCeEEEEEee
Q 005212 321 DDPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (709)
Q Consensus 321 ~~~~~IG~fGiGfKsAs---mrLg~~v~V~TK~ 350 (709)
......+-+|+|+..+- -..|.++.|.|..
T Consensus 305 ~~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2e0a_A 305 SRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLS 337 (394)
T ss_dssp --CCCSSCSSCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCCcccCHHHHHHHHHHhCCEEEEEecC
Confidence 01223456889985321 2467788887754
No 44
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.24 E-value=0.00034 Score=68.16 Aligned_cols=86 Identities=14% Similarity=0.185 Sum_probs=60.0
Q ss_pred CHHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccc
Q 005212 254 WIFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGi 331 (709)
.+..+|.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|||.||+.+++.+++...++.+ ..+..|+
T Consensus 123 ~l~~il~nLl~NA~~~~~~~~~i~i~~~~------~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~------~~~g~Gl 190 (244)
T 3d36_A 123 KFRQCLLNVMKNAIEAMPNGGTLQVYVSI------DNGRVLIRIADTGVGMTKEQLERLGEPYFTTK------GVKGTGL 190 (244)
T ss_dssp HHHHHHHHHHHHHHHTCTTCEEEEEEEEE------ETTEEEEEEEECSSCCCHHHHHHTTSTTCCSS------GGGCCSC
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEEE------eCCEEEEEEEecCCCCCHHHHHHHhcccccCC------CCCCcch
Confidence 356779999999999964 456666653 23467899999999999999988876444332 1234688
Q ss_pred eeeeec---ccccCeEEEEEeeC
Q 005212 332 GFKTGA---MRLGKDALVLTQTA 351 (709)
Q Consensus 332 GfKsAs---mrLg~~v~V~TK~~ 351 (709)
|+..+- -.+|..+.+.+...
T Consensus 191 GL~i~~~i~~~~gG~i~~~~~~~ 213 (244)
T 3d36_A 191 GMMVVYRIIESMNGTIRIESEIH 213 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETT
T ss_pred hHHHHHHHHHHcCCEEEEEecCC
Confidence 885332 24678888877643
No 45
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.23 E-value=0.00016 Score=77.56 Aligned_cols=92 Identities=22% Similarity=0.320 Sum_probs=62.3
Q ss_pred CHHHHHHHHHhcccccCCC----------ccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCC--
Q 005212 254 WIFGAIAELVDNSRDAKAT----------KLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD-- 321 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A~----------~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~-- 321 (709)
.+..+|.+||+||+.|... .|.|.+.. ..+.-.|.|.|||.||+++++.+++...++.+...
T Consensus 238 ~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~ 311 (388)
T 1gkz_A 238 PLDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN------NDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQ 311 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE------CSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-----
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe------CCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCccc
Confidence 3567899999999998532 68887763 34566799999999999999999887544433210
Q ss_pred -----------------CCCccccccceeeeec---ccccCeEEEEEeeC
Q 005212 322 -----------------DPNRIGRFGVGFKTGA---MRLGKDALVLTQTA 351 (709)
Q Consensus 322 -----------------~~~~IG~fGiGfKsAs---mrLg~~v~V~TK~~ 351 (709)
.....+.+|+|+..+- -.+|.++.|.|...
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g 361 (388)
T 1gkz_A 312 DPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQG 361 (388)
T ss_dssp --------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred ccccccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCC
Confidence 0123356788885331 24778888888643
No 46
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.21 E-value=0.00023 Score=77.50 Aligned_cols=90 Identities=19% Similarity=0.267 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcccccCC----------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCC----
Q 005212 255 IFGAIAELVDNSRDAKA----------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDA---- 320 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A----------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~---- 320 (709)
+..+|.+||+||+.|.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+..
T Consensus 254 L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~------~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~ 327 (419)
T 1y8o_A 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTL------GKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLE 327 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHGGGGCTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe------CCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCcc
Confidence 45679999999999853 257777763 3445689999999999999999998754443321
Q ss_pred -CCCCccccccceeeeec---ccccCeEEEEEee
Q 005212 321 -DDPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (709)
Q Consensus 321 -~~~~~IG~fGiGfKsAs---mrLg~~v~V~TK~ 350 (709)
......+-+|+|+..+- -..|.++.|.|..
T Consensus 328 ~~~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~ 361 (419)
T 1y8o_A 328 PTRAAPLAGFGYGLPISRLYARYFQGDLKLYSME 361 (419)
T ss_dssp -----CC--CTTHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcCCeecCHHHHHHHHHHhCCEEEEEecC
Confidence 01223456899985321 2467788887764
No 47
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.18 E-value=0.0003 Score=66.21 Aligned_cols=92 Identities=17% Similarity=0.279 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcccccCC--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccce
Q 005212 255 IFGAIAELVDNSRDAKA--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiG 332 (709)
+..+|.+||+||+++.. ..+.|.+... ...+.-.|.|.|||.||+.+++.+++...++.... .....+..|+|
T Consensus 44 l~~il~nLl~NAi~~~~~~~~i~I~i~~~----~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~-~~~~~~g~GlG 118 (177)
T 3sl2_A 44 ITQVLDNIISNALKYSPEGGHVTFSIDVN----EEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKA-RTRKLGGTGLG 118 (177)
T ss_dssp HHHHHHHHHHHHHHTCCTTCCEEEEEEEE----TTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC-------CCCCCCH
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEEc----cCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCC-CCCCCCCCCcC
Confidence 45679999999999864 4556655321 13345679999999999999998887644432211 12223457888
Q ss_pred eeeec---ccccCeEEEEEeeC
Q 005212 333 FKTGA---MRLGKDALVLTQTA 351 (709)
Q Consensus 333 fKsAs---mrLg~~v~V~TK~~ 351 (709)
+..+- -.+|.++.+.+...
T Consensus 119 L~iv~~~~~~~~G~i~i~~~~~ 140 (177)
T 3sl2_A 119 LAIAKEMVQAHGGDIWADSIEG 140 (177)
T ss_dssp HHHHHHHHHHTTCCEEEEEETT
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 75332 24677777777543
No 48
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.17 E-value=0.00039 Score=63.53 Aligned_cols=83 Identities=19% Similarity=0.218 Sum_probs=51.7
Q ss_pred CHHHHHHHHHhcccccCC-----CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcccc
Q 005212 254 WIFGAIAELVDNSRDAKA-----TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGR 328 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A-----~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~ 328 (709)
.+..+|.|||+||+.++. ..|.|.+.. ..+.-.|.|.|||.||+ ++.+.+.-.++.+. ..+.
T Consensus 39 ~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~------~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~-----~~~~ 105 (145)
T 1th8_A 39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVII------EDGVVHLTVRDEGVGIP--DIEEARQPLFTTKP-----ELER 105 (145)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEE------ETTEEEEEEEECSSCCS--CHHHHTCCC------------CC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEE------eCCEEEEEEEECCCCcC--hHHHhhcccccCCC-----CCCC
Confidence 356889999999998863 456666653 23456899999999999 66666543333221 1133
Q ss_pred ccceeeeecccccCeEEEEEee
Q 005212 329 FGVGFKTGAMRLGKDALVLTQT 350 (709)
Q Consensus 329 fGiGfKsAsmrLg~~v~V~TK~ 350 (709)
.|+|+..+ -++.+.+.+.+..
T Consensus 106 ~GlGL~iv-~~~~~~i~~~~~~ 126 (145)
T 1th8_A 106 SGMGFTIM-ENFMDEVIVESEV 126 (145)
T ss_dssp CSCHHHHH-HHHSSEEEEEEET
T ss_pred CcchHHHH-HHHHheEEEEeCC
Confidence 58888542 2344566666543
No 49
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.15 E-value=0.00027 Score=76.11 Aligned_cols=90 Identities=14% Similarity=0.288 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcccccCC---------CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCC----
Q 005212 255 IFGAIAELVDNSRDAKA---------TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDAD---- 321 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A---------~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~---- 321 (709)
+..+|.+||+||+.+.. ..|.|.+.. ..+.-.|.|.|+|.||+++++.+++...++.+...
T Consensus 232 L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~------~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~ 305 (394)
T 2btz_A 232 LYHMLFELFKNAMRATVESHESSLILPPIKVMVAL------GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGT 305 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEE------CSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC------
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEe------CCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCccc
Confidence 45679999999999843 248887763 34456799999999999999999887554433210
Q ss_pred CCCccccccceeeeec---ccccCeEEEEEee
Q 005212 322 DPNRIGRFGVGFKTGA---MRLGKDALVLTQT 350 (709)
Q Consensus 322 ~~~~IG~fGiGfKsAs---mrLg~~v~V~TK~ 350 (709)
.....+.+|+|+..+- -.+|.++.|.|..
T Consensus 306 ~~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~ 337 (394)
T 2btz_A 306 GGTPLAGFGYGLPISRLYAKYFQGDLQLFSME 337 (394)
T ss_dssp --------CCHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCCCccCCHHHHHHHHHHhCCEEEEEecC
Confidence 1223456888885321 2467888888754
No 50
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.13 E-value=0.00024 Score=68.30 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcccccCCCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccceee
Q 005212 255 IFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFK 334 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGfK 334 (709)
+..+|.+||+||+.+......|.+... ...|.|.|||.||+.+++.+++...++.+. ...+..|+|+.
T Consensus 118 l~~il~nLl~NAi~~~~~~~~i~i~~~--------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----~~~~g~GlGL~ 185 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQGSVVDVTLN--------ADNFIVRDNGPGVTPEALARIGERFYRPPG----QTATGSGLGLS 185 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEEC--------SSEEEEECSCC------------------------------CTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEc--------cCeEEEEECCCCCCHHHHHHHHhhhccCCC----CCCCcccccHH
Confidence 556799999999999765555555431 123999999999999999888764333221 11234688875
Q ss_pred eec---ccccCeEEEEEeeC
Q 005212 335 TGA---MRLGKDALVLTQTA 351 (709)
Q Consensus 335 sAs---mrLg~~v~V~TK~~ 351 (709)
.+- -.+|.++.|.|...
T Consensus 186 i~~~i~~~~gG~i~i~s~~~ 205 (222)
T 3jz3_A 186 IVQRIAKLHGMNVEFGNAEQ 205 (222)
T ss_dssp HHHHHHHHTTCEEECCBCTT
T ss_pred HHHHHHHHcCCEEEEEcCCC
Confidence 322 13566666655443
No 51
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=97.08 E-value=0.00049 Score=74.13 Aligned_cols=89 Identities=17% Similarity=0.231 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcccccC------------C--CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhH-------------
Q 005212 255 IFGAIAELVDNSRDAK------------A--TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV------------- 307 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~------------A--~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL------------- 307 (709)
+..++.+||.||++++ . ..|.|.+.. .++.-.|.|.|||.||+++.+
T Consensus 107 l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~------~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~ 180 (379)
T 1b3q_A 107 IGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH------EGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDES 180 (379)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE------ETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCST
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE------eCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChh
Confidence 3456899999999997 2 345555542 234567999999999999987
Q ss_pred -----------hhhhhcccCCCCCCCCCccccccceeeee---cccccCeEEEEEeeC
Q 005212 308 -----------VRMTYFGHKQPDADDPNRIGRFGVGFKTG---AMRLGKDALVLTQTA 351 (709)
Q Consensus 308 -----------~~~l~fG~s~k~~~~~~~IG~fGiGfKsA---smrLg~~v~V~TK~~ 351 (709)
...|..|++.+.. ....+-.|+|+..+ .-.+|..+.|.|...
T Consensus 181 ~~~~~~~~~~~~~iF~p~fst~~~--~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g 236 (379)
T 1b3q_A 181 KAATLSDQEILNFLFVPGFSTKEK--VSEVSGRGVGMDVVKNVVESLNGSMGIESEKD 236 (379)
T ss_dssp TTTTSCTHHHHSGGGSTTCC-------------CCCSHHHHHHHHHTTCEEEEEEETT
T ss_pred hhhcCCHHHHHHHhcCCCCccCCc--cCCCCCccccHHHHHHHHHHCCCEEEEEEcCC
Confidence 4455555654431 23345578898422 225788888888653
No 52
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.03 E-value=0.00072 Score=60.01 Aligned_cols=69 Identities=19% Similarity=0.291 Sum_probs=50.5
Q ss_pred CHHHHHHHHHhcccccC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccce
Q 005212 254 WIFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVG 332 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiG 332 (709)
.+..++.+||+||+.+. +..|.|.+.. ..+ -.|.|.|||.||+.+. .|+|
T Consensus 43 ~l~~il~nll~NA~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~----------------------~GlG 93 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHAAASTLTVRVKV------DDD-LCIEVTDNGRGMPDEF----------------------TGSG 93 (129)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEEEE------SSE-EEEEEEECCCCCTTTT----------------------CSHH
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEE------cCC-EEEEEecCCCCCCccc----------------------CCcC
Confidence 46678999999999986 6777877764 334 7899999999998754 3778
Q ss_pred eeeec---ccccCeEEEEEeeC
Q 005212 333 FKTGA---MRLGKDALVLTQTA 351 (709)
Q Consensus 333 fKsAs---mrLg~~v~V~TK~~ 351 (709)
+..+. -.+|.++.+.+...
T Consensus 94 L~i~~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 94 LTNLRQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp HHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHcCCEEEEeeCCC
Confidence 75321 24677777777654
No 53
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=96.98 E-value=0.00032 Score=63.02 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcccccccee
Q 005212 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGf 333 (709)
+..++.||++||+.+. +..|.|.+.. ..+.-.|.|.|||.||+++++ +..|+|+
T Consensus 41 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL 95 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS-------------------FSKGHGL 95 (128)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCSCSSC-------------------CCTTSHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEEE------eCCEEEEEEEECCcCcCcccC-------------------CCCCccH
Confidence 5668999999999875 5677777763 234568999999999997654 1247787
Q ss_pred eeec---ccccCeEEEEEee
Q 005212 334 KTGA---MRLGKDALVLTQT 350 (709)
Q Consensus 334 KsAs---mrLg~~v~V~TK~ 350 (709)
..+- -.+|.++.+.|..
T Consensus 96 ~~~~~~~~~~gG~i~~~s~~ 115 (128)
T 3ehg_A 96 LGMRERLEFANGSLHIDTEN 115 (128)
T ss_dssp HHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHcCCEEEEEeCC
Confidence 4321 2466777777655
No 54
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=96.98 E-value=0.00017 Score=65.76 Aligned_cols=90 Identities=12% Similarity=0.133 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcccccC---CCccEEEEEeceecc----CCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccc
Q 005212 255 IFGAIAELVDNSRDAK---ATKLEISIESIYFKK----AGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIG 327 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~---A~~I~I~I~~~~~~~----~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG 327 (709)
+..++.+||+||+.+. ...|.|.+....+.. .....-.|.|.|||.||+.+++.+++...++.+. +
T Consensus 49 l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~-------~ 121 (160)
T 1r62_A 49 IEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE-------G 121 (160)
T ss_dssp HHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC-------------------------
T ss_pred HHHHHHHHHHHHHHHhhccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-------C
Confidence 5567999999999975 456666665311000 0001457899999999999999887754443221 3
Q ss_pred cccceeeeec---ccccCeEEEEEeeC
Q 005212 328 RFGVGFKTGA---MRLGKDALVLTQTA 351 (709)
Q Consensus 328 ~fGiGfKsAs---mrLg~~v~V~TK~~ 351 (709)
..|+|+..+- -.+|.++.+.+...
T Consensus 122 g~GlGL~i~~~~~~~~gG~l~i~s~~~ 148 (160)
T 1r62_A 122 GTGLGLSIARNLIDQHSGKIEFTSWPG 148 (160)
T ss_dssp --CHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCccCHHHHHHHHHHCCCeEEEEeCCC
Confidence 4688875322 24678888877543
No 55
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.62 E-value=0.0011 Score=63.95 Aligned_cols=71 Identities=15% Similarity=0.069 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcccccC-CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCcccccccee
Q 005212 255 IFGAIAELVDNSRDAK-ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGF 333 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~-A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGiGf 333 (709)
+..++.||++||+.+. +..|.|.+.. ..+.-.|.|.|||.||+++.+ +..|+|+
T Consensus 131 l~~il~nll~Na~k~~~~~~i~i~~~~------~~~~~~i~V~D~G~Gi~~~~~-------------------~g~GlGL 185 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQ------LWKEVVITVSDDGTFKGEENS-------------------FSKGHGL 185 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEE------ETTEEEEEEEESSCCCC---------------------------CHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEE------eCCEEEEEEEECCcCCCCCCC-------------------CCCCCCH
Confidence 4567999999999875 4577777653 234578999999999998765 1247777
Q ss_pred eee---cccccCeEEEEEee
Q 005212 334 KTG---AMRLGKDALVLTQT 350 (709)
Q Consensus 334 KsA---smrLg~~v~V~TK~ 350 (709)
..+ .-.+|..+.|.|..
T Consensus 186 ~~~~~~v~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 186 LGMRERLEFANGSLHIDTEN 205 (218)
T ss_dssp HHHHHHHHHTTCEEEEECSS
T ss_pred HHHHHHHHHcCCEEEEeCCC
Confidence 432 12467777777655
No 56
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=96.61 E-value=0.0014 Score=67.25 Aligned_cols=83 Identities=16% Similarity=0.140 Sum_probs=55.5
Q ss_pred CHHHHHHHHHhcccccC--CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhHhhhhhcccCCCCCCCCCccccccc
Q 005212 254 WIFGAIAELVDNSRDAK--ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGV 331 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~--A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL~~~l~fG~s~k~~~~~~~IG~fGi 331 (709)
.+..++.+||+||+++. +..|.|.+.. ..+.-.|.|.|||.||+++++.+++...++.+. +..|+
T Consensus 244 ~l~~vl~nLl~NA~k~~~~~~~i~i~~~~------~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~-------~g~Gl 310 (349)
T 3a0r_A 244 RIKQVLINLVQNAIEATGENGKIKITSED------MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT-------QGTGL 310 (349)
T ss_dssp HHHHHHHHHHTHHHHTTCTTCCEEEEEEE------ETTEEEEEEEEESCCCCGGGGTTTSSSCCCC-------------C
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEEEe------cCCEEEEEEEECCCCCChHHHhhcCCCCccCCC-------CCccc
Confidence 35678999999999986 4567776653 234578999999999999999888764444331 23588
Q ss_pred eeeeec--c--cccCeEEEEEe
Q 005212 332 GFKTGA--M--RLGKDALVLTQ 349 (709)
Q Consensus 332 GfKsAs--m--rLg~~v~V~TK 349 (709)
|+..+- + ..|..+.+.+.
T Consensus 311 GL~i~~~~v~~~~gg~i~~~~~ 332 (349)
T 3a0r_A 311 GLSICRKIIEDEHGGKIWTENR 332 (349)
T ss_dssp CCTHHHHHHHHTTCSBCCEEEC
T ss_pred hHHHHHHHHHHhCCCEEEEEeC
Confidence 875321 1 36666666664
No 57
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.011 Score=72.49 Aligned_cols=84 Identities=15% Similarity=0.229 Sum_probs=53.3
Q ss_pred HHHHHHHhccccc---C-C-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHhH--------hhhhh---cccCCCCC
Q 005212 257 GAIAELVDNSRDA---K-A-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDV--------VRMTY---FGHKQPDA 320 (709)
Q Consensus 257 ~AIaELIDNA~DA---~-A-~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~eeL--------~~~l~---fG~s~k~~ 320 (709)
-.+-|.||||+|- | + +.|.|.|.. ....++|.|||.||+-+.- .-+|+ -|.+-...
T Consensus 62 hl~~EildNsiDea~ag~~~~~I~V~i~~--------~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~ 133 (1177)
T 4gfh_A 62 KIFDEILVNAADNKVRDPSMKRIDVNIHA--------EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDD 133 (1177)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEEEET--------TTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCS
T ss_pred eEeeEEEEChHhHHhhCCCCCeEEEEEEC--------CCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCC
Confidence 3478999999993 3 2 678888862 2468999999999985421 11222 12221111
Q ss_pred CCCCccccccceeeeecccccCeEEEEEe
Q 005212 321 DDPNRIGRFGVGFKTGAMRLGKDALVLTQ 349 (709)
Q Consensus 321 ~~~~~IG~fGiGfKsAsmrLg~~v~V~TK 349 (709)
.-.-.-|..|+|. +..-.|+..+.|.+.
T Consensus 134 ~ykvSGGLHGVG~-svVNALS~~~~vev~ 161 (1177)
T 4gfh_A 134 EKKVTGGRNGYGA-KLCNIFSTEFILETA 161 (1177)
T ss_dssp SCCCCSCCSSCHH-HHHHHTEEEEEEEEE
T ss_pred CCeEeccCCChhh-hHHhhcCCceEEEEE
Confidence 1134568999998 445557888777664
No 58
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=95.68 E-value=0.0078 Score=52.98 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=35.9
Q ss_pred CHHHHHHHHHhcccccCC-CccEEEEEeceeccCCCCcCEEEEEeCCCCCCHHh
Q 005212 254 WIFGAIAELVDNSRDAKA-TKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQD 306 (709)
Q Consensus 254 ~~f~AIaELIDNA~DA~A-~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~ee 306 (709)
.+..++.||++||+.+.. ..|.|.+.. ..+ -.|.|.|||.||+++.
T Consensus 39 ~l~~il~nll~Na~k~~~~~~i~i~~~~------~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 39 HAEAVLREAVSNAVRHANATSLAINVSV------EDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEEEEE------EEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEEe------CCC-EEEEEEECCCCCCccc
Confidence 356789999999999754 577777763 223 6899999999999875
No 59
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=95.39 E-value=0.0089 Score=53.05 Aligned_cols=36 Identities=31% Similarity=0.707 Sum_probs=30.3
Q ss_pred CCceeeCccccccccCC-CCCCCCCCCCceeeCCCCc
Q 005212 643 DQEWVQCNKCRKWRMLD-PGFDTKSLPVECLLRGCVI 678 (709)
Q Consensus 643 ~~~wvQCd~C~KWR~Lp-~~~~~~~lp~~W~c~~c~~ 678 (709)
+..+||||.|.+|-++. -++....+|+.|+|..|.-
T Consensus 39 ~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 39 DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 45899999999999887 3455678999999999974
No 60
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=95.39 E-value=0.0046 Score=51.47 Aligned_cols=36 Identities=19% Similarity=0.532 Sum_probs=29.4
Q ss_pred CCceeeCccccccccCCC-CCCCCCCCCceeeCCCCc
Q 005212 643 DQEWVQCNKCRKWRMLDP-GFDTKSLPVECLLRGCVI 678 (709)
Q Consensus 643 ~~~wvQCd~C~KWR~Lp~-~~~~~~lp~~W~c~~c~~ 678 (709)
+..+||||.|..|-++.= ++....+|+.|+|..|.-
T Consensus 30 ~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 30 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 457999999999999873 455567899999988853
No 61
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=95.09 E-value=0.0046 Score=48.58 Aligned_cols=35 Identities=20% Similarity=0.583 Sum_probs=29.1
Q ss_pred CCceeeCccccccccCCC-CCCCCCCCCceeeCCCC
Q 005212 643 DQEWVQCNKCRKWRMLDP-GFDTKSLPVECLLRGCV 677 (709)
Q Consensus 643 ~~~wvQCd~C~KWR~Lp~-~~~~~~lp~~W~c~~c~ 677 (709)
+..+||||.|..|-++.= ++...++|++|+|..|.
T Consensus 15 ~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~ 50 (52)
T 3o7a_A 15 GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCR 50 (52)
T ss_dssp TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHH
T ss_pred CCCEEEcCCCCccccccccCCCcccCCCcEECcCCC
Confidence 469999999999999874 45556789999998774
No 62
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.09 E-value=0.014 Score=48.75 Aligned_cols=35 Identities=23% Similarity=0.629 Sum_probs=27.4
Q ss_pred CceeeCccccccccCCC-CCCC-CCCCCceeeCCCCc
Q 005212 644 QEWVQCNKCRKWRMLDP-GFDT-KSLPVECLLRGCVI 678 (709)
Q Consensus 644 ~~wvQCd~C~KWR~Lp~-~~~~-~~lp~~W~c~~c~~ 678 (709)
..|||||.|..|-++.= ++.. ..+|++|+|..|.-
T Consensus 29 ~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 29 ERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 37999999999988863 3432 46899999998853
No 63
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.05 E-value=0.014 Score=47.41 Aligned_cols=37 Identities=16% Similarity=0.370 Sum_probs=27.7
Q ss_pred CCCceeeCccccccccCCC-CCCCC--CCCCceeeCCCCc
Q 005212 642 PDQEWVQCNKCRKWRMLDP-GFDTK--SLPVECLLRGCVI 678 (709)
Q Consensus 642 ~~~~wvQCd~C~KWR~Lp~-~~~~~--~lp~~W~c~~c~~ 678 (709)
+...|||||.|..|-+..= ++... +.++.|+|..|.-
T Consensus 18 ~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 18 ADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 3568999999999988763 34333 3479999998854
No 64
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=93.00 E-value=0.067 Score=53.59 Aligned_cols=82 Identities=9% Similarity=-0.081 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcccccCCC--ccEEEEEeceeccCCCCcCEEEEEeCCCC--CCHHhHhhhhhcccCCCCCCCCCcccccc
Q 005212 255 IFGAIAELVDNSRDAKAT--KLEISIESIYFKKAGKDIPMLSIIDDGHG--MTHQDVVRMTYFGHKQPDADDPNRIGRFG 330 (709)
Q Consensus 255 ~f~AIaELIDNA~DA~A~--~I~I~I~~~~~~~~~~~~~~L~I~DNG~G--Mt~eeL~~~l~fG~s~k~~~~~~~IG~fG 330 (709)
...++.-|++||++|... .|.|.+.. ..+...|.|.|+|.| |+++.+...+.-..+. ..+-.|
T Consensus 147 ~~qvl~NLl~NA~~a~~~gg~I~v~~~~------~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~-------~~~G~G 213 (247)
T 4fpp_A 147 SSRAVLNIAQIAASALPAGGVATVKGVA------ADGRFSIIADAKGPRARLRPEVLAGLKGEPLAE-------GLGGPW 213 (247)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEEEEE------ETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCS-------SCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEEE------ECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCC-------CCCCcc
Confidence 456788999999999643 56666653 345678999999988 5565555554311111 122348
Q ss_pred ceeeee---cccccCeEEEEEe
Q 005212 331 VGFKTG---AMRLGKDALVLTQ 349 (709)
Q Consensus 331 iGfKsA---smrLg~~v~V~TK 349 (709)
+|+..+ .-..|.++.|.|.
T Consensus 214 LGLai~~~iv~~hGG~i~v~s~ 235 (247)
T 4fpp_A 214 VQAAYLNALVRAAGGQIAVEIG 235 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEEc
Confidence 887432 1246788887764
No 65
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=92.62 E-value=0.031 Score=43.87 Aligned_cols=37 Identities=24% Similarity=0.619 Sum_probs=26.3
Q ss_pred CCCCceeeCc-cccccccCCC-CCCCC-CCCCceeeCCCC
Q 005212 641 KPDQEWVQCN-KCRKWRMLDP-GFDTK-SLPVECLLRGCV 677 (709)
Q Consensus 641 ~~~~~wvQCd-~C~KWR~Lp~-~~~~~-~lp~~W~c~~c~ 677 (709)
.++..||||| .|.+|=++.= ++... ..+++|+|..|.
T Consensus 13 ~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 13 KDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 3467899999 9999988764 33322 125899999884
No 66
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.56 E-value=0.0049 Score=52.46 Aligned_cols=39 Identities=13% Similarity=0.279 Sum_probs=28.6
Q ss_pred CCceeeCccccccccCCC-CCCC--CCCCCceeeCCCCchhh
Q 005212 643 DQEWVQCNKCRKWRMLDP-GFDT--KSLPVECLLRGCVIFLS 681 (709)
Q Consensus 643 ~~~wvQCd~C~KWR~Lp~-~~~~--~~lp~~W~c~~c~~~~~ 681 (709)
+..|||||.|..|=+..= ++.. ...|+.|+|..|.-...
T Consensus 24 ~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 24 NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp SSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 578999999999976542 2332 23479999999987543
No 67
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=91.30 E-value=0.05 Score=44.94 Aligned_cols=37 Identities=19% Similarity=0.524 Sum_probs=28.5
Q ss_pred CCceeeCc--cccccccCCC-CCC-----CCCCCCceeeCCCCch
Q 005212 643 DQEWVQCN--KCRKWRMLDP-GFD-----TKSLPVECLLRGCVIF 679 (709)
Q Consensus 643 ~~~wvQCd--~C~KWR~Lp~-~~~-----~~~lp~~W~c~~c~~~ 679 (709)
+..+|||| .|..|-+..= ++. ...+|++|+|..|...
T Consensus 21 ~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 21 NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 45899999 6999998873 332 2468899999998763
No 68
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=90.05 E-value=0.043 Score=46.19 Aligned_cols=37 Identities=14% Similarity=0.289 Sum_probs=27.3
Q ss_pred CCCceeeCccccccccCCC-CCCCCC--CCCceeeCCCCc
Q 005212 642 PDQEWVQCNKCRKWRMLDP-GFDTKS--LPVECLLRGCVI 678 (709)
Q Consensus 642 ~~~~wvQCd~C~KWR~Lp~-~~~~~~--lp~~W~c~~c~~ 678 (709)
.+..+||||.|..|-+..= ++.... .++.|+|..|..
T Consensus 21 ~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 21 VTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred CCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 3569999999999987652 344333 348999998865
No 69
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.68 E-value=0.057 Score=45.80 Aligned_cols=37 Identities=22% Similarity=0.556 Sum_probs=28.0
Q ss_pred CCCceeeCc--cccccccCC-CCCCCC------CCCCceeeCCCCc
Q 005212 642 PDQEWVQCN--KCRKWRMLD-PGFDTK------SLPVECLLRGCVI 678 (709)
Q Consensus 642 ~~~~wvQCd--~C~KWR~Lp-~~~~~~------~lp~~W~c~~c~~ 678 (709)
.+..+|||| .|..|-++. -++... ++|++|+|..|.-
T Consensus 26 ~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 26 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 356999999 999998865 233322 6899999998865
No 70
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=89.14 E-value=0.078 Score=44.30 Aligned_cols=37 Identities=14% Similarity=0.405 Sum_probs=25.7
Q ss_pred CceeeCccccccccCCC-CCCCCCC-CCceeeCCCCchh
Q 005212 644 QEWVQCNKCRKWRMLDP-GFDTKSL-PVECLLRGCVIFL 680 (709)
Q Consensus 644 ~~wvQCd~C~KWR~Lp~-~~~~~~l-p~~W~c~~c~~~~ 680 (709)
..|||||.|..|=++.= ++..... .+.|+|..|....
T Consensus 31 ~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 31 SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 47999999999976541 2222223 3799999997643
No 71
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=88.69 E-value=0.054 Score=63.95 Aligned_cols=41 Identities=29% Similarity=0.626 Sum_probs=32.6
Q ss_pred CceeeCc--cccccccCCCCCCC-CCCCCceeeC-------------CCCchhhhhh
Q 005212 644 QEWVQCN--KCRKWRMLDPGFDT-KSLPVECLLR-------------GCVIFLSKRL 684 (709)
Q Consensus 644 ~~wvQCd--~C~KWR~Lp~~~~~-~~lp~~W~c~-------------~c~~~~~~~~ 684 (709)
..|+||- .|.|||+||...+. .+++++..|. .|.+||+.+.
T Consensus 91 ~~~~~c~~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 147 (776)
T 4gut_A 91 PYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPEDLRV 147 (776)
T ss_dssp CCEEECCCTTTCCEEECCTTCCCCHHHHHHCCTTCCCC-------CCGGGSCCCHHH
T ss_pred cHhhhcCcccccchhhCCCcCCCChhhhheeeccCccCcccccccCCCCCCCcccch
Confidence 4999999 99999999987653 5567778886 3777888664
No 72
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.36 E-value=0.22 Score=43.73 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=26.9
Q ss_pred CceeeCcc--cc-ccccCCCCCCCCCCCCceeeCCCCchhhh
Q 005212 644 QEWVQCNK--CR-KWRMLDPGFDTKSLPVECLLRGCVIFLSK 682 (709)
Q Consensus 644 ~~wvQCd~--C~-KWR~Lp~~~~~~~lp~~W~c~~c~~~~~~ 682 (709)
..+||||. |. .|=++.=.--...-+++|||..|.....+
T Consensus 47 g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~~k 88 (91)
T 1weu_A 47 GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESGP 88 (91)
T ss_dssp SCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCCSS
T ss_pred CCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcCCc
Confidence 48999999 76 89777532112233579999999875443
No 73
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=87.61 E-value=0.28 Score=40.99 Aligned_cols=38 Identities=16% Similarity=0.348 Sum_probs=27.5
Q ss_pred CceeeCcc--cc-ccccCCCCCCCCCCC-CceeeCCCCchhhh
Q 005212 644 QEWVQCNK--CR-KWRMLDPGFDTKSLP-VECLLRGCVIFLSK 682 (709)
Q Consensus 644 ~~wvQCd~--C~-KWR~Lp~~~~~~~lp-~~W~c~~c~~~~~~ 682 (709)
..+||||. |. .|=++.=- .....| ++|||..|.....+
T Consensus 27 g~MI~CD~~~C~~~wfH~~Cv-gl~~~p~g~w~Cp~C~~~~~k 68 (71)
T 1wen_A 27 GEMIGCDNPDCSIEWFHFACV-GLTTKPRGKWFCPRCSQESGP 68 (71)
T ss_dssp SSEECCSCSSCSCCCEETTTT-TCSSCCSSCCCCTTTSSCSSS
T ss_pred CCEeEeeCCCCCCccEecccC-CcCcCCCCCEECCCCCccccc
Confidence 58999999 87 79877532 223333 89999999875543
No 74
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=85.42 E-value=0.089 Score=50.54 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=27.8
Q ss_pred CCceeeCccccccccCCC-CCCC--CCCCCceeeCCCCchh
Q 005212 643 DQEWVQCNKCRKWRMLDP-GFDT--KSLPVECLLRGCVIFL 680 (709)
Q Consensus 643 ~~~wvQCd~C~KWR~Lp~-~~~~--~~lp~~W~c~~c~~~~ 680 (709)
...|||||.|..|=+..= ++.. .+.++.|+|..|.-..
T Consensus 20 ~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 20 SKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp TSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 458999999999966542 2222 3468999999997644
No 75
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.49 E-value=0.055 Score=45.44 Aligned_cols=36 Identities=19% Similarity=0.513 Sum_probs=25.6
Q ss_pred CCceeeCccccccccCCC-CCCCCC------CCCceeeCCCCc
Q 005212 643 DQEWVQCNKCRKWRMLDP-GFDTKS------LPVECLLRGCVI 678 (709)
Q Consensus 643 ~~~wvQCd~C~KWR~Lp~-~~~~~~------lp~~W~c~~c~~ 678 (709)
+..|||||.|..|-+..= ++.... .|++|+|..|..
T Consensus 27 ~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 27 NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 358999999999977642 232211 378999998854
No 76
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=82.97 E-value=0.91 Score=48.98 Aligned_cols=48 Identities=25% Similarity=0.319 Sum_probs=34.1
Q ss_pred cCHHHHHHHHHhcccccC-----CCccEEEEEeceeccCCCCcCEEEEEeCCCCCCHH
Q 005212 253 GWIFGAIAELVDNSRDAK-----ATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQ 305 (709)
Q Consensus 253 ~~~f~AIaELIDNA~DA~-----A~~I~I~I~~~~~~~~~~~~~~L~I~DNG~GMt~e 305 (709)
..+.-++.||+.||+..+ ...|.|.+... ..+.-.|.|.|+|.|++..
T Consensus 296 ~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~-----~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 296 ADIVHAISEFVENAVEHGYATDVSKGIVVAAALA-----GDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEEC-----TTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEc-----CCCEEEEEEEECCCCCCCC
Confidence 346689999999999986 56788877631 1335689999999999875
No 77
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=81.31 E-value=0.93 Score=44.55 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=31.1
Q ss_pred HHHHHhcccccC--------CCccEEEEEeceeccCC--CCcCEEEEEeCCCCCCHHhHhhhhhcc
Q 005212 259 IAELVDNSRDAK--------ATKLEISIESIYFKKAG--KDIPMLSIIDDGHGMTHQDVVRMTYFG 314 (709)
Q Consensus 259 IaELIDNA~DA~--------A~~I~I~I~~~~~~~~~--~~~~~L~I~DNG~GMt~eeL~~~l~fG 314 (709)
+..|++||.+|- .+.|.|.+.. . ++...|.|.|+|.|++.+.+.+++.-|
T Consensus 110 lgnLi~na~~Ai~~~~~~~~~~~I~i~i~~------~~~~~~l~i~V~d~G~~i~~e~~~~if~~~ 169 (192)
T 1ixm_A 110 LAKLMRKLFHLFDQAVSRESENHLTVSLQT------DHPDRQLILYLDFHGAFADPSAFDDIRQNG 169 (192)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCCEEEEEEEC------CCSSSSCEEEEEEESCBSCGGGCC------
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEEEEE------ecCCCEEEEEEEeCCCCCCHHHHHHHHhCC
Confidence 344555555542 4567777763 2 456889999999999999888876533
No 78
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=79.89 E-value=0.73 Score=51.98 Aligned_cols=39 Identities=26% Similarity=0.634 Sum_probs=30.1
Q ss_pred CCCCCceeeCccccccccCC-CCCCC--CCCCCceeeCCCCc
Q 005212 640 YKPDQEWVQCNKCRKWRMLD-PGFDT--KSLPVECLLRGCVI 678 (709)
Q Consensus 640 ~~~~~~wvQCd~C~KWR~Lp-~~~~~--~~lp~~W~c~~c~~ 678 (709)
.-++..|||||.|..|=+.. -++.. .+..++|+|..|.-
T Consensus 52 ~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~ 93 (528)
T 3pur_A 52 KKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVP 93 (528)
T ss_dssp TTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHH
T ss_pred CCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcC
Confidence 34678999999999998875 23443 35679999999875
No 79
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=78.23 E-value=0.44 Score=46.81 Aligned_cols=37 Identities=22% Similarity=0.472 Sum_probs=27.2
Q ss_pred CceeeCccccccccCCC-CCCC------CCCCC--ceeeCCCCchh
Q 005212 644 QEWVQCNKCRKWRMLDP-GFDT------KSLPV--ECLLRGCVIFL 680 (709)
Q Consensus 644 ~~wvQCd~C~KWR~Lp~-~~~~------~~lp~--~W~c~~c~~~~ 680 (709)
..|||||.|..|=+..= ++.. .++|+ .|+|..|.-..
T Consensus 19 ~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 19 SKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 46999999999988752 3332 23565 89999998743
No 80
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=77.37 E-value=0.34 Score=43.37 Aligned_cols=41 Identities=20% Similarity=0.384 Sum_probs=27.6
Q ss_pred CCCCCceeeCc-cccccccCCC-CCCCC-------CCCCceeeCCCCchh
Q 005212 640 YKPDQEWVQCN-KCRKWRMLDP-GFDTK-------SLPVECLLRGCVIFL 680 (709)
Q Consensus 640 ~~~~~~wvQCd-~C~KWR~Lp~-~~~~~-------~lp~~W~c~~c~~~~ 680 (709)
|.++..||||| .|..|=+..= ++... +-.++|+|..|....
T Consensus 13 ~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 13 VNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 33466899998 9999977642 23321 123899999987643
No 81
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=74.30 E-value=0.62 Score=37.87 Aligned_cols=34 Identities=15% Similarity=0.344 Sum_probs=23.7
Q ss_pred CceeeCcc--cc-ccccCCC-CCCCCCCCCceeeCCCCc
Q 005212 644 QEWVQCNK--CR-KWRMLDP-GFDTKSLPVECLLRGCVI 678 (709)
Q Consensus 644 ~~wvQCd~--C~-KWR~Lp~-~~~~~~lp~~W~c~~c~~ 678 (709)
..+||||. |. .|=++.= ++. ..-+++|+|..|..
T Consensus 22 g~MI~CD~c~C~~~WfH~~Cvgl~-~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 22 GEMIGCDNEQCPIEWFHFSCVSLT-YKPKGKWYCPKCRG 59 (62)
T ss_dssp SEEEECSCTTCSSCEEETGGGTCS-SCCSSCCCCHHHHT
T ss_pred CCeeeeeCCCCCcccEecccCCcC-cCCCCCEECcCccc
Confidence 47999999 55 9977753 232 23357999998853
No 82
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=73.71 E-value=0.3 Score=54.73 Aligned_cols=37 Identities=14% Similarity=0.341 Sum_probs=27.7
Q ss_pred CCCceeeCccccccccCCC-CCCCC--CCCCceeeCCCCc
Q 005212 642 PDQEWVQCNKCRKWRMLDP-GFDTK--SLPVECLLRGCVI 678 (709)
Q Consensus 642 ~~~~wvQCd~C~KWR~Lp~-~~~~~--~lp~~W~c~~c~~ 678 (709)
++..+||||.|..|=+..= ++... +.+++|+|..|..
T Consensus 48 ~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 48 VNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp TTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred CCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 3568999999999977652 33333 4578999998875
No 83
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=73.39 E-value=0.67 Score=37.26 Aligned_cols=33 Identities=21% Similarity=0.483 Sum_probs=23.1
Q ss_pred CceeeCcc--cc-ccccCCCCCCCCCC-CCceeeCCCC
Q 005212 644 QEWVQCNK--CR-KWRMLDPGFDTKSL-PVECLLRGCV 677 (709)
Q Consensus 644 ~~wvQCd~--C~-KWR~Lp~~~~~~~l-p~~W~c~~c~ 677 (709)
...||||. |. .|=++.=- +.... .++|+|..|.
T Consensus 20 g~mi~CD~~~C~~~wfH~~Cv-gl~~~p~~~w~Cp~C~ 56 (59)
T 3c6w_A 20 GEMIGCDNPDCPIEWFHFACV-DLTTKPKGKWFCPRCV 56 (59)
T ss_dssp SEEEECSCTTCSSCEEETGGG-TCSSCCSSCCCCHHHH
T ss_pred CCeeEeeCCCCCCCCEecccC-CcccCCCCCEECcCcc
Confidence 47999999 87 79777532 12223 3899998874
No 84
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=70.79 E-value=1.6 Score=34.80 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCCceeeCCCCchhhhh
Q 005212 658 LDPGFDTKSLPVECLLRGCVIFLSKR 683 (709)
Q Consensus 658 Lp~~~~~~~lp~~W~c~~c~~~~~~~ 683 (709)
+++++.-++||+.|.|-.|.++++..
T Consensus 24 i~pGt~fe~lP~dw~CP~Cg~~K~~F 49 (54)
T 4rxn_A 24 VNPGTDFKDIPDDWVCPLCGVGKDEF 49 (54)
T ss_dssp BCTTCCGGGSCTTCBCTTTCCBGGGE
T ss_pred cCCCCChhHCCCCCcCcCCCCcHHHc
Confidence 34455557999999999999987654
No 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=67.01 E-value=2 Score=32.93 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=24.3
Q ss_pred CceeeCccccccccCC---CCCCCCCCC-CceeeCCCCc
Q 005212 644 QEWVQCNKCRKWRMLD---PGFDTKSLP-VECLLRGCVI 678 (709)
Q Consensus 644 ~~wvQCd~C~KWR~Lp---~~~~~~~lp-~~W~c~~c~~ 678 (709)
...|.||.|.+|-++. ..+ .+.| +.|+|..|.-
T Consensus 13 ~~ll~Cd~C~~~~H~~Cl~p~l--~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 13 DKLILCDECNKAFHLFCLRPAL--YEVPDGEWQCPACQP 49 (51)
T ss_dssp SCCEECTTTCCEECHHHHCTTC--CSCCSSCCSCTTTSC
T ss_pred CCEEECCCCChhhCcccCCCCc--CCCCCCcEECcCccc
Confidence 4789999999997654 222 3455 4999999964
No 86
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=66.90 E-value=1.9 Score=37.73 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=23.3
Q ss_pred CceeeCcccc---ccccCCC-CCCCCCCCCceeeCC-CC
Q 005212 644 QEWVQCNKCR---KWRMLDP-GFDTKSLPVECLLRG-CV 677 (709)
Q Consensus 644 ~~wvQCd~C~---KWR~Lp~-~~~~~~lp~~W~c~~-c~ 677 (709)
..+|+||.|. .|=++.= ++. ....++|||.. |.
T Consensus 37 g~MI~CD~c~C~~eWfH~~CVgl~-~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 37 GPMVACDNPACPFEWFHYGCVGLK-QAPKGKWYCSKDCK 74 (90)
T ss_dssp SSEECCCSSSCSCSCEETTTSSCS-SCTTSCCCSSHHHH
T ss_pred CCEEEecCCCCccccCcCccCCCC-cCCCCCccCChhhc
Confidence 3799999977 8987753 222 22236999998 85
No 87
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=65.56 E-value=2.4 Score=34.77 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=24.3
Q ss_pred CCCCCceeeCc-cccccccCC-CCCCCCC------CC-CceeeCCC
Q 005212 640 YKPDQEWVQCN-KCRKWRMLD-PGFDTKS------LP-VECLLRGC 676 (709)
Q Consensus 640 ~~~~~~wvQCd-~C~KWR~Lp-~~~~~~~------lp-~~W~c~~c 676 (709)
+.++..||||| .|.+|=+.. -++.... .| ..|+|..|
T Consensus 18 ~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C 63 (65)
T 2vpb_A 18 VNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTC 63 (65)
T ss_dssp CCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHH
T ss_pred cCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCc
Confidence 45678999999 999996543 1233211 12 38999876
No 88
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=65.31 E-value=1.3 Score=35.68 Aligned_cols=33 Identities=18% Similarity=0.482 Sum_probs=23.0
Q ss_pred CceeeCcc--cc-ccccCCCCCCCCCCC-CceeeCCCC
Q 005212 644 QEWVQCNK--CR-KWRMLDPGFDTKSLP-VECLLRGCV 677 (709)
Q Consensus 644 ~~wvQCd~--C~-KWR~Lp~~~~~~~lp-~~W~c~~c~ 677 (709)
...|+||. |. .|=++.=- .....| ++|+|..|.
T Consensus 21 g~mi~CD~cdC~~~wfH~~Cv-gl~~~p~g~w~C~~C~ 57 (60)
T 2vnf_A 21 GEMIGCDNPDCSIEWFHFACV-GLTTKPRGKWFCPRCS 57 (60)
T ss_dssp SEEEECSCTTCSSCEEETGGG-TCSSCCSSCCCCHHHH
T ss_pred CCEEEeCCCCCCCceEehhcC-CCCcCCCCCEECcCcc
Confidence 57999999 66 89777521 122333 899998874
No 89
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=65.26 E-value=2.8 Score=32.97 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=17.9
Q ss_pred CCCCCCCCCCceeeCCCCchhhh
Q 005212 660 PGFDTKSLPVECLLRGCVIFLSK 682 (709)
Q Consensus 660 ~~~~~~~lp~~W~c~~c~~~~~~ 682 (709)
+++.-++||+.|.|-.|.++++.
T Consensus 26 pGt~f~~lP~dw~CP~Cg~~K~~ 48 (52)
T 1e8j_A 26 PGTKFEDLPDDWACPVCGASKDA 48 (52)
T ss_dssp SSCCTTSSCTTCCCSSSCCCTTS
T ss_pred CCCchHHCCCCCcCCCCCCcHHH
Confidence 33344789999999999997764
No 90
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.24 E-value=0.62 Score=38.79 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=26.8
Q ss_pred CCceeeCccc---cccccCCC-CCCCCCCCCceeeCCCCchhhh
Q 005212 643 DQEWVQCNKC---RKWRMLDP-GFDTKSLPVECLLRGCVIFLSK 682 (709)
Q Consensus 643 ~~~wvQCd~C---~KWR~Lp~-~~~~~~lp~~W~c~~c~~~~~~ 682 (709)
+...||||.| ..|=++.= ++. ..-+++|+|..|.....+
T Consensus 16 ~g~MI~CD~cdC~~~WfH~~Cvgl~-~~p~~~w~Cp~C~~~~~k 58 (70)
T 1x4i_A 16 YGEMVGCDNQDCPIEWFHYGCVGLT-EAPKGKWYCPQCTAAMKR 58 (70)
T ss_dssp CSSEECCSCTTCSCCCEEHHHHTCS-SCCSSCCCCHHHHHHHHH
T ss_pred CCCEeEeCCCCCCccCCcccccccC-cCCCCCEECCCCCccccc
Confidence 3489999997 48977652 232 234689999999765443
No 91
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=61.95 E-value=3.9 Score=35.16 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=26.8
Q ss_pred ceeeCccccccccC----------CCCCCCCCCCCceeeCCCCchhhhh
Q 005212 645 EWVQCNKCRKWRML----------DPGFDTKSLPVECLLRGCVIFLSKR 683 (709)
Q Consensus 645 ~wvQCd~C~KWR~L----------p~~~~~~~lp~~W~c~~c~~~~~~~ 683 (709)
.--+|..|. |-.= |++..-++||+.|.|..|.++++..
T Consensus 26 ~~y~C~vCG-yvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K~~F 73 (81)
T 2kn9_A 26 KLFRCIQCG-FEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDF 73 (81)
T ss_dssp CEEEETTTC-CEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCCGGGE
T ss_pred ceEEeCCCC-EEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCCHHHc
Confidence 345688887 3332 3344447899999999999987755
No 92
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=61.39 E-value=0.77 Score=50.96 Aligned_cols=37 Identities=14% Similarity=0.309 Sum_probs=27.5
Q ss_pred CCCceeeCccccccccCCC-CCCC--CCCCCceeeCCCCc
Q 005212 642 PDQEWVQCNKCRKWRMLDP-GFDT--KSLPVECLLRGCVI 678 (709)
Q Consensus 642 ~~~~wvQCd~C~KWR~Lp~-~~~~--~~lp~~W~c~~c~~ 678 (709)
++..+||||.|..|=+..= ++.. ...+++|+|..|.-
T Consensus 16 ~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~ 55 (447)
T 3kv4_A 16 VTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEV 55 (447)
T ss_dssp TTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHH
T ss_pred CCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcc
Confidence 3578999999999977652 3332 34568999998865
No 93
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=61.02 E-value=3.2 Score=32.68 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCceeeCCCCchhhhh
Q 005212 659 DPGFDTKSLPVECLLRGCVIFLSKR 683 (709)
Q Consensus 659 p~~~~~~~lp~~W~c~~c~~~~~~~ 683 (709)
+.++.-++||+.|.|-.|.++++..
T Consensus 24 ~pGt~f~~lP~dw~CP~Cg~~K~~F 48 (52)
T 1yk4_A 24 SPGTKFEDLPDDWVCPLCGAPKSEF 48 (52)
T ss_dssp CTTCCGGGSCTTCBCTTTCCBGGGE
T ss_pred CCCCCHhHCCCCCcCCCCCCCHHHc
Confidence 3444446899999999999987653
No 94
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=60.95 E-value=3.1 Score=33.17 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=18.7
Q ss_pred CCCCCCCCCCceeeCCCCchhhhh
Q 005212 660 PGFDTKSLPVECLLRGCVIFLSKR 683 (709)
Q Consensus 660 ~~~~~~~lp~~W~c~~c~~~~~~~ 683 (709)
+++.-++||+.|.|-.|.++++..
T Consensus 26 pGt~f~~lP~dw~CP~Cga~K~~F 49 (55)
T 2v3b_B 26 AGTRWEDIPADWVCPDCGVGKIDF 49 (55)
T ss_dssp TTCCGGGSCTTCCCTTTCCCGGGE
T ss_pred CCCChhHCCCCCcCCCCCCCHHHc
Confidence 344446799999999999987754
No 95
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=55.96 E-value=4.2 Score=33.92 Aligned_cols=20 Identities=10% Similarity=-0.008 Sum_probs=17.2
Q ss_pred CCCCCCceeeCCCCchhhhh
Q 005212 664 TKSLPVECLLRGCVIFLSKR 683 (709)
Q Consensus 664 ~~~lp~~W~c~~c~~~~~~~ 683 (709)
-++||+.|.|-.|.++++..
T Consensus 34 f~~lPddw~CP~Cga~K~~F 53 (70)
T 1dx8_A 34 FVDLSDSFMCPACRSPKNQF 53 (70)
T ss_dssp GGGSCTTCBCTTTCCBGGGE
T ss_pred hhhCCCCCcCCCCCCCHHHc
Confidence 36799999999999987755
No 96
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.01 E-value=4.6 Score=31.71 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=23.3
Q ss_pred CceeeCccccccccCCCCC-CCCCCC-CceeeCCC
Q 005212 644 QEWVQCNKCRKWRMLDPGF-DTKSLP-VECLLRGC 676 (709)
Q Consensus 644 ~~wvQCd~C~KWR~Lp~~~-~~~~lp-~~W~c~~c 676 (709)
...+.||.|.+|-++.=-. .....| +.|+|..|
T Consensus 19 g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C 53 (56)
T 2yql_A 19 GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRC 53 (56)
T ss_dssp SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHH
T ss_pred CeEEEcCCCCcceECccCCCCcCCCCCCceEChhh
Confidence 4799999999998775211 123455 59999877
No 97
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=51.03 E-value=4.7 Score=31.03 Aligned_cols=19 Identities=16% Similarity=0.161 Sum_probs=16.2
Q ss_pred CCCCCceeeCCCCchhhhh
Q 005212 665 KSLPVECLLRGCVIFLSKR 683 (709)
Q Consensus 665 ~~lp~~W~c~~c~~~~~~~ 683 (709)
++||+.|.|-.|..+++..
T Consensus 25 ~~lP~dw~CP~Cg~~k~~F 43 (46)
T 6rxn_A 25 DQLPDDWCCPVCGVSKDQF 43 (46)
T ss_dssp GGSCTTCBCTTTCCBGGGE
T ss_pred hhCCCCCcCcCCCCcHHHc
Confidence 4899999999999987653
No 98
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=50.22 E-value=3.3 Score=33.68 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=25.5
Q ss_pred CceeeCccccccccCCCCCC--CCCCC-CceeeCCCCchh
Q 005212 644 QEWVQCNKCRKWRMLDPGFD--TKSLP-VECLLRGCVIFL 680 (709)
Q Consensus 644 ~~wvQCd~C~KWR~Lp~~~~--~~~lp-~~W~c~~c~~~~ 680 (709)
...+-||.|.+|-++.= ++ ...+| +.|+|..|....
T Consensus 18 g~ll~CD~C~~~fH~~C-l~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 18 GELICCDGCPRAFHLAC-LSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SSCEECSSCCCEECTTT-SSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCEEEcCCCChhhcccc-cCCCcCcCCCCCeECccccCcc
Confidence 47899999999977642 22 23445 699999986543
No 99
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.11 E-value=4.8 Score=35.03 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=26.0
Q ss_pred CceeeCccccccccCCCCCC--CCCCCC-ceeeCCCCchh
Q 005212 644 QEWVQCNKCRKWRMLDPGFD--TKSLPV-ECLLRGCVIFL 680 (709)
Q Consensus 644 ~~wvQCd~C~KWR~Lp~~~~--~~~lp~-~W~c~~c~~~~ 680 (709)
...|.||.|.+|-++. =++ ...+|+ .|+|..|...+
T Consensus 29 ~~ll~CD~C~~~~H~~-Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 29 DKLLFCDGCDDNYHIF-CLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp GGCEECTTTCCEECSS-SSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CCEEEcCCCCchhccc-cCCCCcccCCCCCcCCccCcCcc
Confidence 3699999999998764 222 245664 99999997643
No 100
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=48.93 E-value=3.4 Score=32.87 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=24.4
Q ss_pred CceeeCccccccccCCCCCC-CCCCC-CceeeCCCCch
Q 005212 644 QEWVQCNKCRKWRMLDPGFD-TKSLP-VECLLRGCVIF 679 (709)
Q Consensus 644 ~~wvQCd~C~KWR~Lp~~~~-~~~lp-~~W~c~~c~~~ 679 (709)
...+.||.|.+|-++.=-.. ....| +.|+|..|.-.
T Consensus 15 g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 15 GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 47899999999977641110 13344 58999988653
No 101
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=47.61 E-value=6.7 Score=34.14 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=25.4
Q ss_pred eeeCccccccccC----------CCCCCCCCCCCceeeCCCCchhhhh
Q 005212 646 WVQCNKCRKWRML----------DPGFDTKSLPVECLLRGCVIFLSKR 683 (709)
Q Consensus 646 wvQCd~C~KWR~L----------p~~~~~~~lp~~W~c~~c~~~~~~~ 683 (709)
--+|..|. |-.= +.+..-++||+.|.|-.|.++++..
T Consensus 35 ~y~C~vCG-yvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K~~F 81 (87)
T 1s24_A 35 KWICITCG-HIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGATKEDY 81 (87)
T ss_dssp EEEETTTT-EEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCCGGGE
T ss_pred eEECCCCC-eEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCCHHHh
Confidence 44677776 2232 2333336999999999999987654
No 102
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=46.92 E-value=3.8 Score=36.54 Aligned_cols=33 Identities=24% Similarity=0.566 Sum_probs=23.2
Q ss_pred eeeCccccccccCCC-CCCC------CCCCC--ceeeCCCCc
Q 005212 646 WVQCNKCRKWRMLDP-GFDT------KSLPV--ECLLRGCVI 678 (709)
Q Consensus 646 wvQCd~C~KWR~Lp~-~~~~------~~lp~--~W~c~~c~~ 678 (709)
.||||.|..|-+-.- +++. .+||+ .|.|..|.-
T Consensus 2 mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred ccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 699999999976442 2332 45565 699998874
No 103
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=46.23 E-value=12 Score=29.82 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=25.1
Q ss_pred CceeeCccccccccCCCCC-CCCCCC-CceeeCCCCchh
Q 005212 644 QEWVQCNKCRKWRMLDPGF-DTKSLP-VECLLRGCVIFL 680 (709)
Q Consensus 644 ~~wvQCd~C~KWR~Lp~~~-~~~~lp-~~W~c~~c~~~~ 680 (709)
...+.||.|.++-++.=-. ...++| +.|+|..|....
T Consensus 19 g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 19 GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 4789999999986554211 123444 589999997643
No 104
>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC domain,, transcription; 1.80A {Homo sapiens} SCOP: b.131.1.3
Probab=43.11 E-value=12 Score=36.98 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=26.6
Q ss_pred HHHHHHhhcCCeEEEEEec-------eeEEEEeCCC
Q 005212 88 RRFLIYLQGRDMVAIAKFK-------FWEFYILPPD 116 (709)
Q Consensus 88 ~~f~~~l~~~~~~~~~~~~-------~~~~~~~~~~ 116 (709)
..|.+||+.-.-+|||.+. .+-+|||||-
T Consensus 128 ~~fV~YL~qKqAAGIisl~~~~s~~~~~vlhiFPPC 163 (195)
T 1ow1_A 128 AAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPC 163 (195)
T ss_dssp HHTHHHHHHHTEEEEEEECCTTCCSCCEEEEEECSS
T ss_pred HHHHHHHHhCccceEEecCCCCCCCcceEEEEcCCc
Confidence 5599999999999999998 5999999997
No 105
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=41.62 E-value=9.1 Score=31.33 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=24.6
Q ss_pred CCceeeCccccccccCCCC-CCCCCCC-CceeeCCCCc
Q 005212 643 DQEWVQCNKCRKWRMLDPG-FDTKSLP-VECLLRGCVI 678 (709)
Q Consensus 643 ~~~wvQCd~C~KWR~Lp~~-~~~~~lp-~~W~c~~c~~ 678 (709)
....+.||.|.+|=++.=- -.....| +.|+|..|.-
T Consensus 21 ~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 21 GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 3468999999998765421 0123555 5899999964
No 106
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=35.56 E-value=8.9 Score=35.18 Aligned_cols=16 Identities=25% Similarity=0.777 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHhhcCC
Q 005212 83 DHNEWRRFLIYLQGRD 98 (709)
Q Consensus 83 ~~~ew~~f~~~l~~~~ 98 (709)
...+|++||||+.+++
T Consensus 86 s~~~WdRFMRFMeRYA 101 (120)
T 2kvo_A 86 SQPEWDRFMRFMERYG 101 (120)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3469999999998775
No 107
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=32.25 E-value=25 Score=33.72 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=24.8
Q ss_pred CceeeCccccccccCCCCC-CCCCCC-CceeeCCCCch
Q 005212 644 QEWVQCNKCRKWRMLDPGF-DTKSLP-VECLLRGCVIF 679 (709)
Q Consensus 644 ~~wvQCd~C~KWR~Lp~~~-~~~~lp-~~W~c~~c~~~ 679 (709)
...+.||.|.+|=++.=-. .....| +.|+|..|.-.
T Consensus 14 g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 14 GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 4589999999987654321 113445 57999999863
No 108
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=30.62 E-value=11 Score=31.32 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=24.4
Q ss_pred CCceeeCccccccccCCCCCCCCCCC-CceeeCCCCchh
Q 005212 643 DQEWVQCNKCRKWRMLDPGFDTKSLP-VECLLRGCVIFL 680 (709)
Q Consensus 643 ~~~wvQCd~C~KWR~Lp~~~~~~~lp-~~W~c~~c~~~~ 680 (709)
....|.||.|.+|=++.= +++..+| +.|+|..|....
T Consensus 30 ~~~ll~CD~C~~~~H~~C-l~~~~vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 30 SNVILFCDMCNLAVHQEC-YGVPYIPEGQWLCRHCLQSR 67 (71)
T ss_dssp SSCEEECSSSCCEEEHHH-HTCSSCCSSCCCCHHHHHHH
T ss_pred CCCEEECCCCCCcccccc-CCCCcCCCCCcCCccCcCcC
Confidence 358999999999865420 1111244 489999997644
No 109
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=29.50 E-value=30 Score=33.92 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=23.5
Q ss_pred ceeeCccccccccCCCCC-CCCCCC-CceeeCCCCc
Q 005212 645 EWVQCNKCRKWRMLDPGF-DTKSLP-VECLLRGCVI 678 (709)
Q Consensus 645 ~wvQCd~C~KWR~Lp~~~-~~~~lp-~~W~c~~c~~ 678 (709)
..+-||.|.+|=++.=-. .....| +.|+|..|.-
T Consensus 18 ~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 53 (207)
T 3u5n_A 18 DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRD 53 (207)
T ss_dssp EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeC
Confidence 689999999986654221 113444 5799999975
No 110
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=27.98 E-value=7 Score=33.70 Aligned_cols=36 Identities=17% Similarity=0.312 Sum_probs=24.0
Q ss_pred ceeeCccccccccCCCCCCCCCCC-CceeeCCCCchhh
Q 005212 645 EWVQCNKCRKWRMLDPGFDTKSLP-VECLLRGCVIFLS 681 (709)
Q Consensus 645 ~wvQCd~C~KWR~Lp~~~~~~~lp-~~W~c~~c~~~~~ 681 (709)
..|.||.|..|=++. =+++..+| +.|||..|.....
T Consensus 41 ~ll~CD~C~~~fH~~-Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 41 VILFCDMCNLAVHQE-CYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp EEEECSSSCCCCCHH-HHTCSSCCSSCCCCHHHHHHTT
T ss_pred CEEECCCCCchhhcc-cCCCCccCCCceECccccCccc
Confidence 899999999884431 11222355 5999999976443
No 111
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=27.84 E-value=21 Score=31.64 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=25.5
Q ss_pred CceeeCccccccccCCC-C-----CCCCCCCCceeeCCCC
Q 005212 644 QEWVQCNKCRKWRMLDP-G-----FDTKSLPVECLLRGCV 677 (709)
Q Consensus 644 ~~wvQCd~C~KWR~Lp~-~-----~~~~~lp~~W~c~~c~ 677 (709)
..++||+.|..|-+.-= + +-.+++|+.|.|..|.
T Consensus 73 ~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~ 112 (117)
T 4bbq_A 73 KKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCY 112 (117)
T ss_dssp GSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC
T ss_pred cceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCc
Confidence 46899999999976431 1 1236889999999885
No 112
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=26.76 E-value=41 Score=28.31 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=24.2
Q ss_pred CceeeCccccccccCCCCCC-CCCCCCc--eeeCCCC
Q 005212 644 QEWVQCNKCRKWRMLDPGFD-TKSLPVE--CLLRGCV 677 (709)
Q Consensus 644 ~~wvQCd~C~KWR~Lp~~~~-~~~lp~~--W~c~~c~ 677 (709)
...+.||.|.++=++.=-.- ...+|+. |+|..|.
T Consensus 39 ~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~ 75 (77)
T 3shb_A 39 DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 75 (77)
T ss_dssp GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC
T ss_pred cceeEeCCCCCccCcccCCCcccCCCCCCceECcCcc
Confidence 47899999999877653211 2456653 9999985
No 113
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=24.12 E-value=34 Score=27.22 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=22.7
Q ss_pred CceeeCccccccccCCC-CCCCCCCC-CceeeCCCCc
Q 005212 644 QEWVQCNKCRKWRMLDP-GFDTKSLP-VECLLRGCVI 678 (709)
Q Consensus 644 ~~wvQCd~C~KWR~Lp~-~~~~~~lp-~~W~c~~c~~ 678 (709)
...+.||.|.+|=++.= .....+.| +.|+|..|.-
T Consensus 21 g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 21 GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 47899999999855431 00012333 6899999953
No 114
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=24.02 E-value=36 Score=33.20 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=24.3
Q ss_pred CCceeeCccccccccCCC--CCCCCCCCCcee----eCCCCch
Q 005212 643 DQEWVQCNKCRKWRMLDP--GFDTKSLPVECL----LRGCVIF 679 (709)
Q Consensus 643 ~~~wvQCd~C~KWR~Lp~--~~~~~~lp~~W~----c~~c~~~ 679 (709)
...-+||+.|++|=+..= -....-+|..++ |+.|.-.
T Consensus 17 ~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 17 GEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp TSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTT
T ss_pred CceeEeeccccceecHHHhcccccCccccceeEEEEccccCCC
Confidence 446899999999965441 111234775655 8899873
No 115
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.01 E-value=59 Score=27.25 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=25.1
Q ss_pred CCceeeCccccccccCCCCCC--CCCCCC--ceeeCCCC
Q 005212 643 DQEWVQCNKCRKWRMLDPGFD--TKSLPV--ECLLRGCV 677 (709)
Q Consensus 643 ~~~wvQCd~C~KWR~Lp~~~~--~~~lp~--~W~c~~c~ 677 (709)
....+.||.|.++=++.= ++ ...+|+ .|+|..|.
T Consensus 38 ~~~ll~CD~C~~~yH~~C-l~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 38 PNMQLLCDECNVAYHIYC-LNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp STTEEECSSSCCEEETTS-SSSCCSSCCCSSCCCCTTTC
T ss_pred CCCEEEcCCCCccccccc-cCCCccCCCCCCCcCCcCcc
Confidence 458999999998866542 22 356776 69999996
No 116
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=22.77 E-value=40 Score=27.63 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=24.9
Q ss_pred CCceeeCccccccccCCCCCC--CCCCCC--ceeeCCCCc
Q 005212 643 DQEWVQCNKCRKWRMLDPGFD--TKSLPV--ECLLRGCVI 678 (709)
Q Consensus 643 ~~~wvQCd~C~KWR~Lp~~~~--~~~lp~--~W~c~~c~~ 678 (709)
....+.||.|.+|=++.= ++ ..++|+ .|+|..|..
T Consensus 30 ~~~ll~CD~C~~~yH~~C-l~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 30 PDKQLMCDECDMAFHIYC-LDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp GGGEEECTTTCCEEEGGG-SSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCEEEcCCCCCceeccc-CCCCcCCCCCCCCcCCcCccC
Confidence 347899999999876541 12 245664 899999974
No 117
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=22.51 E-value=22 Score=31.30 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=23.3
Q ss_pred CceeeCccccccccCCCCC-CCCCCC-CceeeCCCCc
Q 005212 644 QEWVQCNKCRKWRMLDPGF-DTKSLP-VECLLRGCVI 678 (709)
Q Consensus 644 ~~wvQCd~C~KWR~Lp~~~-~~~~lp-~~W~c~~c~~ 678 (709)
...++||.|.+|-++.=-- ....+| +.|+|..|..
T Consensus 67 ~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 67 SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 4799999999996653110 113444 5899987754
No 118
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=21.83 E-value=51 Score=29.22 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=23.7
Q ss_pred CCceeeCccccccccCCCCC-CCCCCCC-ceeeCCCC
Q 005212 643 DQEWVQCNKCRKWRMLDPGF-DTKSLPV-ECLLRGCV 677 (709)
Q Consensus 643 ~~~wvQCd~C~KWR~Lp~~~-~~~~lp~-~W~c~~c~ 677 (709)
+...+.||.|.++=++.=-. ...++|+ .|+|..|.
T Consensus 74 ~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~ 110 (112)
T 3v43_A 74 ADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICR 110 (112)
T ss_dssp TCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTS
T ss_pred ccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCC
Confidence 45799999999887654211 1134554 69999996
No 119
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=21.28 E-value=33 Score=30.63 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=25.1
Q ss_pred CCceeeCccccccccCCCCC-CCCCCC-CceeeCCCCc
Q 005212 643 DQEWVQCNKCRKWRMLDPGF-DTKSLP-VECLLRGCVI 678 (709)
Q Consensus 643 ~~~wvQCd~C~KWR~Lp~~~-~~~~lp-~~W~c~~c~~ 678 (709)
+...+.||.|.+|-++.=-- ....+| +.|+|..|..
T Consensus 70 ~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 70 DDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp TTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 46899999999997765211 124555 4899998854
Done!